Query 025209
Match_columns 256
No_of_seqs 215 out of 1610
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:49:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cn5_A Aquaporin; membrane pro 100.0 2.8E-39 9.6E-44 294.6 16.4 198 51-254 24-221 (304)
2 3iyz_A Aquaporin-4; water tran 100.0 1.5E-33 5.2E-38 259.2 16.9 183 62-252 21-208 (340)
3 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 2.1E-32 7.2E-37 245.4 16.1 163 78-252 2-164 (266)
4 3gd8_A Aquaporin-4; proton exc 100.0 2.9E-32 9.9E-37 238.8 16.5 159 86-252 2-160 (223)
5 2zz9_A Aquaporin-4; water tran 100.0 3.4E-32 1.2E-36 247.5 17.0 164 81-252 6-169 (301)
6 1j4n_A Aquaporin 1; membrane p 100.0 9E-32 3.1E-36 241.9 15.3 170 80-252 3-172 (271)
7 2b6o_A Aquaporin-0, lens fiber 100.0 2.2E-31 7.5E-36 238.4 17.5 161 80-252 2-162 (263)
8 1ldf_A Glycerol uptake facilit 100.0 7.8E-31 2.7E-35 236.9 13.2 152 85-245 5-173 (281)
9 3llq_A Aquaporin Z 2; aquapori 100.0 3.3E-30 1.1E-34 229.7 15.5 153 84-244 26-184 (256)
10 2f2b_A Aquaporin AQPM; protein 100.0 6.4E-30 2.2E-34 226.9 16.4 159 86-244 3-170 (246)
11 2o9g_A Aquaporin Z; integral m 100.0 5.5E-30 1.9E-34 225.8 14.9 148 87-243 4-160 (234)
12 3c02_A Aquaglyceroporin; membr 100.0 1.4E-30 4.8E-35 232.6 10.6 151 85-244 7-161 (258)
13 2w2e_A AQY1, aquaporin, aquapo 100.0 1.7E-29 6E-34 227.8 17.3 154 85-244 42-195 (279)
14 2f2b_A Aquaporin AQPM; protein 99.7 2.9E-17 1E-21 145.4 10.0 100 85-198 141-245 (246)
15 2o9g_A Aquaporin Z; integral m 99.7 1.7E-17 5.7E-22 146.0 6.3 142 30-199 90-232 (234)
16 3llq_A Aquaporin Z 2; aquapori 99.7 1.9E-17 6.6E-22 147.4 6.4 136 32-197 117-253 (256)
17 2w2e_A AQY1, aquaporin, aquapo 99.6 4.4E-15 1.5E-19 133.7 8.9 104 85-202 166-269 (279)
18 2b6o_A Aquaporin-0, lens fiber 99.6 1E-14 3.6E-19 130.3 10.7 100 86-199 126-225 (263)
19 3cn5_A Aquaporin; membrane pro 99.5 5.9E-15 2E-19 134.3 6.4 106 85-199 182-289 (304)
20 3d9s_A Aquaporin-5, AQP-5; aqu 99.5 1.8E-14 6.1E-19 128.9 9.4 102 85-200 127-229 (266)
21 3iyz_A Aquaporin-4; water tran 99.5 2.3E-14 7.8E-19 131.8 9.7 101 85-199 171-271 (340)
22 3gd8_A Aquaporin-4; proton exc 99.5 2.3E-14 7.8E-19 125.2 9.0 98 86-197 124-221 (223)
23 2zz9_A Aquaporin-4; water tran 99.5 2.6E-14 8.8E-19 129.9 8.6 101 85-199 132-232 (301)
24 1ldf_A Glycerol uptake facilit 99.5 6E-14 2.1E-18 126.4 9.5 105 85-201 143-259 (281)
25 3c02_A Aquaglyceroporin; membr 99.5 4.9E-14 1.7E-18 125.5 7.6 103 88-201 135-246 (258)
26 1j4n_A Aquaporin 1; membrane p 99.5 8.1E-14 2.8E-18 125.0 7.2 98 88-199 138-235 (271)
27 3s2u_A UDP-N-acetylglucosamine 39.9 2.7 9.3E-05 37.6 -2.4 20 148-167 8-27 (365)
28 3kcu_A Probable formate transp 32.5 2.5E+02 0.0085 24.4 12.5 107 130-239 68-183 (285)
29 2yvc_D Neprilysin; protein-pep 31.6 12 0.00042 20.7 0.4 14 4-17 11-24 (26)
30 3tds_E Formate/nitrite transpo 31.4 1.4E+02 0.0048 25.9 7.4 108 129-238 63-177 (268)
No 1
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=2.8e-39 Score=294.63 Aligned_cols=198 Identities=72% Similarity=1.178 Sum_probs=145.6
Q ss_pred CCCCccccccCccCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcch
Q 025209 51 MAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGI 130 (256)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~ 130 (256)
|.+|.|.++|+.++.+||.||+|.+.++.+|+++++++|++++||+||++|+|++++++........ .....++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~------~~~~~g~ 97 (304)
T 3cn5_A 24 MSKEVSEEAQAHQHGKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETV------VCGSVGL 97 (304)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS------TTCSCHH
T ss_pred HHHHhhccccccccCCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccC------CCCCCCc
Confidence 5566543222345679999999999999999999999999999999999999999998775432211 1245678
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccc
Q 025209 131 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANE 210 (256)
Q Consensus 131 l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~ 210 (256)
+.+++++|+++++.+++++++||||+|||||+++++.|+++|.++++||+||++||++|+++++.+++++++..+.+.+.
T Consensus 98 l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~ 177 (304)
T 3cn5_A 98 LGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANS 177 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCC
T ss_pred eeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999887776666666
Q ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcccc
Q 025209 211 LADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVSL 254 (256)
Q Consensus 211 ~~~~~s~~~af~~E~v~TfiLv~~il~~~d~k~~~~~~~~P~l~ 254 (256)
+.++++..++|+.|+++||+|+++|+.++|++|....++.|.++
T Consensus 178 ~~~~~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~la 221 (304)
T 3cn5_A 178 VALGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILA 221 (304)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEEC
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccch
Confidence 77889999999999999999999999999977765555444443
No 2
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=1.5e-33 Score=259.22 Aligned_cols=183 Identities=34% Similarity=0.561 Sum_probs=150.5
Q ss_pred ccCCCCCCCCCCCCccc-----hhhhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHH
Q 025209 62 SYSAKDYTDPPPEPLFD-----AVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWA 136 (256)
Q Consensus 62 ~~~~~~~~~~~p~~~~~-----~~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala 136 (256)
++..++|.||.+.+... ..+....+++|++++||+|||+|+|+++|++++.... +.....+++.++++
T Consensus 21 ~~~~~~~~~~~~~ps~~~~~~~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~-------~~~~~~g~l~Iala 93 (340)
T 3iyz_A 21 QMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-------ENPLPVDMVLISLC 93 (340)
T ss_pred hcCCCCCCCCCCCCcchhhhhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CCCCCcchHHHHHH
Confidence 45678888887777332 2345556899999999999999999999988754111 11234568889999
Q ss_pred HHHHHHHHHHHhcCCCCCCCChHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCc
Q 025209 137 FGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYS 216 (256)
Q Consensus 137 ~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s 216 (256)
+|+++++.+++++++||||+|||||+++++.|+++|.++++||+||++||++|+++++.+++++... ..+.+.+.++++
T Consensus 94 ~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-~lg~~~~~~~~s 172 (340)
T 3iyz_A 94 FGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLT 172 (340)
T ss_pred HHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-ceeeccCCCccC
Confidence 9999999999999999999999999999999999999999999999999999999999998875432 233455677889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcc
Q 025209 217 TGVGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPV 252 (256)
Q Consensus 217 ~~~af~~E~v~TfiLv~~il~~~d~k~~~~~~~~P~ 252 (256)
..++|+.|+++||+|+++|++++|+++....+..|+
T Consensus 173 ~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl 208 (340)
T 3iyz_A 173 AGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVAL 208 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhh
Confidence 999999999999999999999999887654444453
No 3
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=245.36 Aligned_cols=163 Identities=33% Similarity=0.526 Sum_probs=139.5
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 025209 78 DAVELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 157 (256)
Q Consensus 78 ~~~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlN 157 (256)
+.+|+++++++|++++||+||++|+|++++++.... ....+++.+++++|+++++.+++++++||||+|
T Consensus 2 ~~~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~~-----------~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlN 70 (266)
T 3d9s_A 2 SKKEVCSVAFLKAVFAEFLATLIFVFFGLGSALKWP-----------SALPTILQIALAFGLAIGTLAQALGPVSGGHIN 70 (266)
T ss_dssp CHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-----------SSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred ChhhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------CCCccHHHHHHHHHHHHHHHHHHHcccCcceEC
Confidence 356788899999999999999999999999875311 112457889999999999999999999999999
Q ss_pred hHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025209 158 PAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 237 (256)
Q Consensus 158 PAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~ 237 (256)
||||+++++.|+++|.++++||+||++||++|+++++.++++.... ..+.+.+.++.+..++|+.|+++||+|+++|++
T Consensus 71 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~-~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~ 149 (266)
T 3d9s_A 71 PAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARG-NLAVNALNNNTTQGQAMVVELILTFQLALCIFA 149 (266)
T ss_dssp HHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccC-ceeeccCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875432 334455667789999999999999999999999
Q ss_pred hccCCCCCCCCCCcc
Q 025209 238 ATDPKRSARDSHVPV 252 (256)
Q Consensus 238 ~~d~k~~~~~~~~P~ 252 (256)
++|+++....+..|+
T Consensus 150 ~~d~~~~~~~~~~pl 164 (266)
T 3d9s_A 150 STDSRRTSPVGSPAL 164 (266)
T ss_dssp HHCTTCCSCCCCHHH
T ss_pred HhcccCCCccchHHH
Confidence 999877654555554
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=238.80 Aligned_cols=159 Identities=36% Similarity=0.631 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 025209 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (256)
Q Consensus 86 ~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~ 165 (256)
+++|++++||+||++|+++++|++.+.... ++....+++.+++++|+++++.+++++++||+|+|||||++++
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~-------~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~ 74 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGT-------EKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 74 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTT-------TSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHH
Confidence 468999999999999999999988754111 1123457888999999999999999999999999999999999
Q ss_pred HhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 025209 166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRSA 245 (256)
Q Consensus 166 l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~d~k~~~ 245 (256)
+.|+++|.+++.|+++|++||++|+.++|.+++++... ..+.+.+.++.+..++|+.|+++||+|+++++.++|+|+..
T Consensus 75 ~~g~~~~~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~-~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~ 153 (223)
T 3gd8_A 75 CTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSVVG-GLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTD 153 (223)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHT-TTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 99999999999999999999999999999998876532 23445567788999999999999999999999999988765
Q ss_pred CCCCCcc
Q 025209 246 RDSHVPV 252 (256)
Q Consensus 246 ~~~~~P~ 252 (256)
..+..|+
T Consensus 154 ~~~~~pl 160 (223)
T 3gd8_A 154 VTGSIAL 160 (223)
T ss_dssp CCSCHHH
T ss_pred ccCCccH
Confidence 5444443
No 5
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=3.4e-32 Score=247.55 Aligned_cols=164 Identities=36% Similarity=0.610 Sum_probs=137.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHH
Q 025209 81 ELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAV 160 (256)
Q Consensus 81 e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAv 160 (256)
|..+.+++|++++||+||++|+|+++|++.+.... +.....+++.+++++|+++++.+++++++||||+||||
T Consensus 6 ~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~-------~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAV 78 (301)
T 2zz9_A 6 GVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGS-------ENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAV 78 (301)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC--------CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-------CCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHH
Confidence 44557899999999999999999999988654321 11234567889999999999999999999999999999
Q ss_pred HHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhcc
Q 025209 161 TFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATD 240 (256)
Q Consensus 161 Tla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~d 240 (256)
|+++++.|+++|.++++||+||++||++|++++|.+++++... ..+.+.+.++.+..++|+.|+++||+|+++|++++|
T Consensus 79 Tla~~~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~-~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d 157 (301)
T 2zz9_A 79 TVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-GLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCD 157 (301)
T ss_dssp HHHHHHTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGG-TSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-ceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999875432 234455667889999999999999999999999998
Q ss_pred CCCCCCCCCCcc
Q 025209 241 PKRSARDSHVPV 252 (256)
Q Consensus 241 ~k~~~~~~~~P~ 252 (256)
+++....+..|+
T Consensus 158 ~~~~~~~~~~pl 169 (301)
T 2zz9_A 158 DKRTDVTGSVAL 169 (301)
T ss_dssp SSSSCCSSCHHH
T ss_pred CCCCCccchHhH
Confidence 877654444443
No 6
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.97 E-value=9e-32 Score=241.91 Aligned_cols=170 Identities=37% Similarity=0.617 Sum_probs=138.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChH
Q 025209 80 VELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 159 (256)
Q Consensus 80 ~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPA 159 (256)
+|.++++++|++++||+||++|+|+++|++......... +.+.....+.+.+++++|+++++.+++++++||||+|||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~--~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPA 80 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKS--NQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPA 80 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSS--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--ccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHH
Confidence 466778899999999999999999999987654321100 001122345788999999999999999999999999999
Q ss_pred HHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 025209 160 VTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (256)
Q Consensus 160 vTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~ 239 (256)
||+++++.|+++|.++++||++|++||++|+++++.++++... ...+.+.+.++++..++|+.|+++||+|+++|++++
T Consensus 81 VTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~~ 159 (271)
T 1j4n_A 81 VTLGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPD-NSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLATT 159 (271)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTT-CCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-cccccccCCCccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999865322 123344556778889999999999999999999999
Q ss_pred cCCCCCCCCCCcc
Q 025209 240 DPKRSARDSHVPV 252 (256)
Q Consensus 240 d~k~~~~~~~~P~ 252 (256)
|+|+.......|+
T Consensus 160 d~~~~~~~~~~pl 172 (271)
T 1j4n_A 160 DRRRRDLGGSGPL 172 (271)
T ss_dssp CSSCCCCCSCHHH
T ss_pred cccCCCccccHHH
Confidence 9877654455554
No 7
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.97 E-value=2.2e-31 Score=238.43 Aligned_cols=161 Identities=34% Similarity=0.533 Sum_probs=136.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChH
Q 025209 80 VELTKWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPA 159 (256)
Q Consensus 80 ~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPA 159 (256)
+|.++++++|++++||+||++|+|++++++... . ....+++.+++++|+++++.+++++++||+|+|||
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~--~---------~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPA 70 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW--A---------PGPLHVLQVALAFGLALATLVQAVGHISGAHVNPA 70 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--C---------SSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC--C---------CCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChH
Confidence 366678899999999999999999999987532 1 12335778999999999999999999999999999
Q ss_pred HHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 025209 160 VTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (256)
Q Consensus 160 vTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~ 239 (256)
||+++++.|+++|.++++||++|++||++|+.+++.++++++.. ..+.+.+.++++..++|+.|+++||+|+++|++++
T Consensus 71 VTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~~ 149 (263)
T 2b6o_A 71 VTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRG-NLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATY 149 (263)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCS-SCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-ccccccCCccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999876532 23455567788999999999999999999999999
Q ss_pred cCCCCCCCCCCcc
Q 025209 240 DPKRSARDSHVPV 252 (256)
Q Consensus 240 d~k~~~~~~~~P~ 252 (256)
|+++.......|+
T Consensus 150 d~~~~~~~~~~pl 162 (263)
T 2b6o_A 150 DERRNGRLGSVAL 162 (263)
T ss_dssp CTTSCSSCCCHHH
T ss_pred cccCCCCcccHHH
Confidence 9877655555553
No 8
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.97 E-value=7.8e-31 Score=236.91 Aligned_cols=152 Identities=26% Similarity=0.342 Sum_probs=127.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+++|++++||+||++|+|++++++......+ ...+...+++++|+++++.+++++++||+|+|||||+++
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~---------~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~ 75 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAG---------ASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIAL 75 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC---------CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---------CCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHH
Confidence 45789999999999999999998765433221 112344589999999999999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcC-----------------CCccccCCCCchHHHHHHHHHH
Q 025209 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYG-----------------GGANELADGYSTGVGLAAEIIG 227 (256)
Q Consensus 165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~-----------------~~~~~~~~~~s~~~af~~E~v~ 227 (256)
++.|+++|.++++||++|++||++|++++|.+++++++..+ ..++.|.++++..++|+.|+++
T Consensus 76 ~~~g~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~ 155 (281)
T 1ldf_A 76 WLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVI 155 (281)
T ss_dssp HHHSCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999987653321 1233455678999999999999
Q ss_pred HHHHHHHHHHhccCCCCC
Q 025209 228 TFVLVYTVFSATDPKRSA 245 (256)
Q Consensus 228 TfiLv~~il~~~d~k~~~ 245 (256)
||+|+++|++++|+|+..
T Consensus 156 Tf~Lv~~il~~~d~~~~~ 173 (281)
T 1ldf_A 156 TAILMGLILALTDDGNGV 173 (281)
T ss_dssp HHHHHHHHHHHHCTTSSS
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 999999999999987754
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.97 E-value=3.3e-30 Score=229.72 Aligned_cols=153 Identities=29% Similarity=0.430 Sum_probs=124.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHH
Q 025209 84 KWSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 163 (256)
Q Consensus 84 ~~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla 163 (256)
..+++|++++||+||++|+|+++|++....... ....+++.+++++|+++++.+++++++||||+|||||++
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~--------~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla 97 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFP--------ELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVG 97 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCT--------TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHH
Confidence 356789999999999999999999865322111 134568889999999999999999999999999999999
Q ss_pred HHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhh--hhhcCCCc----cccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025209 164 LFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY--YTRYGGGA----NELADGYSTGVGLAAEIIGTFVLVYTVFS 237 (256)
Q Consensus 164 ~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~--~~~~~~~~----~~~~~~~s~~~af~~E~v~TfiLv~~il~ 237 (256)
+++.|+++|.++++||+||++||++|+++++.++++. ++..+... .+.+...+..++|+.|+++||+|++++++
T Consensus 98 ~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~ 177 (256)
T 3llq_A 98 LTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILG 177 (256)
T ss_dssp HHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998642 22111111 11234678999999999999999999999
Q ss_pred hccCCCC
Q 025209 238 ATDPKRS 244 (256)
Q Consensus 238 ~~d~k~~ 244 (256)
++|+|+.
T Consensus 178 ~~d~~~~ 184 (256)
T 3llq_A 178 STHGRVP 184 (256)
T ss_dssp HHSTTSC
T ss_pred hcCCCCC
Confidence 9997653
No 10
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.97 E-value=6.4e-30 Score=226.87 Aligned_cols=159 Identities=30% Similarity=0.354 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeccc-cCCCCCC----CCC---CCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 025209 86 SFYRALIAEFIATLLFLYVTVLTVIGYK-SQTDPAK----NVD---GCAGVGILGIAWAFGGMIFVLVYCTAGISGGHIN 157 (256)
Q Consensus 86 ~l~r~~laEfigT~lfvf~~~g~~~~~~-~~~~~~~----~~~---~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlN 157 (256)
+++|++++||+||++|+|++++++.... ....+.. +.+ .....+++.+++++|+++++.+++++++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 4689999999999999999998776543 1110000 000 0022346679999999999999999999999999
Q ss_pred hHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhh-hcCCCccccCCCCchHHHHHHHHHHHHHHHHHHH
Q 025209 158 PAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYT-RYGGGANELADGYSTGVGLAAEIIGTFVLVYTVF 236 (256)
Q Consensus 158 PAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~-~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il 236 (256)
||||+++++.|+++|.++++||++|++||++|+.+++.+++++.. ....+.+.|.++.+..++|+.|+++||+|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 999999999999999999999999999999999999999986321 1222344555788999999999999999999999
Q ss_pred HhccCCCC
Q 025209 237 SATDPKRS 244 (256)
Q Consensus 237 ~~~d~k~~ 244 (256)
++.++++.
T Consensus 163 ~~~~~~~~ 170 (246)
T 2f2b_A 163 GIAVDERA 170 (246)
T ss_dssp HHTTSTTS
T ss_pred EEecCCCC
Confidence 97665443
No 11
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.97 E-value=5.5e-30 Score=225.80 Aligned_cols=148 Identities=28% Similarity=0.444 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHH
Q 025209 87 FYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFL 166 (256)
Q Consensus 87 l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l 166 (256)
++|++++||+||++|+|++++++....... ....+++.+++++|+++++.+++++++||+|+|||||+++++
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~--------~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~ 75 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFP--------ELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWA 75 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCT--------TTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCC--------CCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHH
Confidence 579999999999999999998764321110 123468889999999999999999999999999999999999
Q ss_pred hcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhh--hhhc-------CCCccccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 025209 167 ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSY--YTRY-------GGGANELADGYSTGVGLAAEIIGTFVLVYTVFS 237 (256)
Q Consensus 167 ~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~--~~~~-------~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~ 237 (256)
.|+++|.+++.||++|++||++|+.+++.++++. ++.. ..+++ .+.+.+..++|+.|+++||+|+++++.
T Consensus 76 ~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t-~p~~~~~~~~~~~E~i~T~~Lv~~i~~ 154 (234)
T 2o9g_A 76 GGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEH-SPGGYSMLSALVVELVLSAGFLLVIHG 154 (234)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGG-STTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeec-CCCccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998753 2211 11112 233678999999999999999999999
Q ss_pred hccCCC
Q 025209 238 ATDPKR 243 (256)
Q Consensus 238 ~~d~k~ 243 (256)
++|+|+
T Consensus 155 ~~d~~~ 160 (234)
T 2o9g_A 155 ATDKFA 160 (234)
T ss_dssp HTSTTS
T ss_pred hcCCCC
Confidence 998653
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.97 E-value=1.4e-30 Score=232.65 Aligned_cols=151 Identities=22% Similarity=0.319 Sum_probs=126.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
++++|++++||+||++|+|++++++.+..... ...+++.+++++|+++++.+++++++||+|+|||||+++
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~---------~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~ 77 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTG---------LSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGL 77 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---------STTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------CCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHH
Confidence 56789999999999999999998776433111 123578899999999999999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCC----CccccCCCCchHHHHHHHHHHHHHHHHHHHHhcc
Q 025209 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGG----GANELADGYSTGVGLAAEIIGTFVLVYTVFSATD 240 (256)
Q Consensus 165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~----~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~d 240 (256)
++.|+++|.++++||++|++||++|+++++.+++++++..+. +......+++..++|+.|+++||+|+++|++++|
T Consensus 78 ~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~~d 157 (258)
T 3c02_A 78 SSINKFDLKKIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVVVD 157 (258)
T ss_dssp HHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999987764321 1122234456677999999999999999999998
Q ss_pred CCCC
Q 025209 241 PKRS 244 (256)
Q Consensus 241 ~k~~ 244 (256)
+||.
T Consensus 158 ~~~~ 161 (258)
T 3c02_A 158 ENIC 161 (258)
T ss_dssp HHHH
T ss_pred cccC
Confidence 7754
No 13
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.96 E-value=1.7e-29 Score=227.78 Aligned_cols=154 Identities=29% Similarity=0.419 Sum_probs=126.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+.+|++++||+||++|+|++++++........ ...+.....+++.+++++|+++++.+++++++||||+|||||+++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~--~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~ 119 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPE--TPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLAL 119 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC--CGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHH
Confidence 467899999999999999999886321111000 000112345678899999999999999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhhhcCCCccccCCCCchHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 025209 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYTRYGGGANELADGYSTGVGLAAEIIGTFVLVYTVFSATDPKRS 244 (256)
Q Consensus 165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~~~~~~~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~d~k~~ 244 (256)
++.|+++|.++++||+||++||++|+++++.++++.+. ..+.+.++.+..++|+.|+++||+|+++|+.+.++++.
T Consensus 120 ~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~----~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 120 VLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA----FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC----CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce----eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999876542 23445667899999999999999999999998876553
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.70 E-value=2.9e-17 Score=145.42 Aligned_cols=100 Identities=21% Similarity=0.303 Sum_probs=83.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+.++.++.|+++|+++++++++........ ....++.+|+.++.+++..+++||+|+|||||+++
T Consensus 141 ~~~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~--------------~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp 206 (246)
T 2f2b_A 141 ISYWQAMLAEVVGTFLLMITIMGIAVDERAP--------------KGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGP 206 (246)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSTTSC--------------TTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHheeeEEecCCCCC--------------CceeeHHHHHHHHHHHhcccccCCCccCHHHHHHH
Confidence 4567999999999999999998754321111 11278999999999999999999999999999999
Q ss_pred HH-----hcccchhhHHHHHHHHhHHHHHHHHHHHHHhh
Q 025209 165 FL-----ARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK 198 (256)
Q Consensus 165 ~l-----~G~~~~~~~~~yivaQ~lGailga~l~~~l~~ 198 (256)
++ .++..|.+.|+||++|++|+++|+++++.+++
T Consensus 207 ~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 207 YLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp HHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 98 23557888999999999999999999988754
No 15
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.69 E-value=1.7e-17 Score=146.01 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=103.0
Q ss_pred cCccchhhhheeeeeeeeCCCCCCCccccccCccCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhee
Q 025209 30 CGFAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTV 109 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~e~~~~~l~r~~laEfigT~lfvf~~~g~~ 109 (256)
..+.++.+-+..++++..+.+ +++..+ ++...+++....|.. .+.++.++.|+++|+++++++++.+
T Consensus 90 aQ~lGa~~ga~l~~~~~~~~~---~~~~~~-~~~~~~~~~~t~p~~---------~~~~~~~~~E~i~T~~Lv~~i~~~~ 156 (234)
T 2o9g_A 90 AQVVGGIVAAALLYLIASGKT---GFDAAA-SGFASNGYGEHSPGG---------YSMLSALVVELVLSAGFLLVIHGAT 156 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTTST---TCCHHH-HCTTCCCCGGGSTTC---------CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCcc---cccccc-cccccceeeecCCCc---------cchHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444555666666654 443211 122333443333333 4668899999999999999998765
Q ss_pred eccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHh-cccchhhHHHHHHHHhHHHHH
Q 025209 110 IGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA-RKVSLVRAVMYMVAQCLGAIS 188 (256)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~-G~~~~~~~~~yivaQ~lGail 188 (256)
..+... ...++.+|+.++.+++..++.||+.+||||++++.+. |...|.+.|+||++|++|+++
T Consensus 157 d~~~~~---------------~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~l 221 (234)
T 2o9g_A 157 DKFAPA---------------GFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII 221 (234)
T ss_dssp STTSCT---------------TCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHH
T ss_pred CCCCcc---------------chHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHH
Confidence 321110 1278999999999999999999999999999999985 666788999999999999999
Q ss_pred HHHHHHHHhhh
Q 025209 189 GVGLVKAFQKS 199 (256)
Q Consensus 189 ga~l~~~l~~~ 199 (256)
|+++++.++.+
T Consensus 222 a~~~y~~~~~~ 232 (234)
T 2o9g_A 222 GGLIYRTLLEK 232 (234)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHcCC
Confidence 99999987653
No 16
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.69 E-value=1.9e-17 Score=147.35 Aligned_cols=136 Identities=23% Similarity=0.302 Sum_probs=100.7
Q ss_pred ccchhhhheeeeeeeeCCCCCCCccccccCccCCCCCCCCCCCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHhheeec
Q 025209 32 FAVLSVFSVSLQIIVTGFPMAKDTGVAEHGSYSAKDYTDPPPEPLFDAVELTKWSFYRALIAEFIATLLFLYVTVLTVIG 111 (256)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~e~~~~~l~r~~laEfigT~lfvf~~~g~~~~ 111 (256)
+.++.+=+.+++.+.++++ .++.+ ++..+++....|.. ++..+.++.|+++||++++++++.+..
T Consensus 117 ~lGA~~ga~lv~~~~~~~~---~~~~~---~~~~~~~~~t~p~~---------~s~~~~f~~E~i~Tf~Lv~~il~~~d~ 181 (256)
T 3llq_A 117 VAGAIVAAAALYVIATGKA---GIDLG---GFASNGYGEHSPGG---------YSLVSALLIEIILTAFFLIVILGSTHG 181 (256)
T ss_dssp HHHHHHHHHHHHHHHTTBT---TCCCT---TTTCCCCGGGSTTC---------CCHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCcc---ccccc---ccccccccccCCcc---------cCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3344444445566666654 34321 23334444334433 567899999999999999998876542
Q ss_pred cccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHh-cccchhhHHHHHHHHhHHHHHHH
Q 025209 112 YKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA-RKVSLVRAVMYMVAQCLGAISGV 190 (256)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~-G~~~~~~~~~yivaQ~lGailga 190 (256)
.... ...++.+|+.++++.+..++.||+.+||||++++.+. |...|.+.|+||++|++|+++|+
T Consensus 182 ~~~~---------------~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~ 246 (256)
T 3llq_A 182 RVPA---------------GFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGA 246 (256)
T ss_dssp TSCT---------------TCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCCc---------------cchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHH
Confidence 2111 1268999999999999999999999999999999984 66678899999999999999999
Q ss_pred HHHHHHh
Q 025209 191 GLVKAFQ 197 (256)
Q Consensus 191 ~l~~~l~ 197 (256)
++++.+.
T Consensus 247 ~~y~~l~ 253 (256)
T 3llq_A 247 VIWKLFG 253 (256)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9998874
No 17
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.57 E-value=4.4e-15 Score=133.72 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+..+.++.|+++||++++++++.+..... .....++.+|+.++++++..++.||+.+||||++++
T Consensus 166 ~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~--------------~~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GP 231 (279)
T 2w2e_A 166 ASRTRGLFLEAFGTAILCLTVLMLAVEKHR--------------ATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGP 231 (279)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTTSCST--------------TGGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCCC--------------CcCcHHHHHHHHHHHHHHhcccccccccChHHHHHH
Confidence 456789999999999999998876432111 012378999999999999999999999999999999
Q ss_pred HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Q 025209 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKSYYT 202 (256)
Q Consensus 165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~~~~ 202 (256)
++....-+.+.|+||++|++|+++|+++++.+...+++
T Consensus 232 al~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~ 269 (279)
T 2w2e_A 232 AVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQ 269 (279)
T ss_dssp HHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 99765444578999999999999999999998766554
No 18
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.56 E-value=1e-14 Score=130.26 Aligned_cols=100 Identities=22% Similarity=0.200 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 025209 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (256)
Q Consensus 86 ~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~ 165 (256)
+..+.++.|+++||++++++++.+....... . -..++.+|+.++++++..++.||+.+||||++++.
T Consensus 126 s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~-----------~--~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPa 192 (263)
T 2b6o_A 126 SVGQATIVEIFLTLQFVLCIFATYDERRNGR-----------L--GSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPA 192 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCTTSCSS-----------C--CCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCCCC-----------c--ccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHH
Confidence 4578999999999999999987643221110 0 12688999999999999999999999999999999
Q ss_pred HhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 025209 166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKS 199 (256)
Q Consensus 166 l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~ 199 (256)
+... .|.+.|+||++|++|+++|+++++.++.+
T Consensus 193 l~~~-~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~ 225 (263)
T 2b6o_A 193 ILTR-NFTNHWVYWVGPVIGAGLGSLLYDFLLFP 225 (263)
T ss_dssp HHHT-CCTTCTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHcC-CccceeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9655 68899999999999999999999987654
No 19
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.53 E-value=5.9e-15 Score=134.30 Aligned_cols=106 Identities=22% Similarity=0.260 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+..+.++.|+++||++++++++.+........ .......++.+|+.++++++..++.||+.+||||++++
T Consensus 182 ~s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~---------~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GP 252 (304)
T 3cn5_A 182 YNKGTALGAEIIGTFVLVYTVFSATDPKRSARD---------SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGA 252 (304)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTEEEEEESTT---------SCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHhheecCccCCCC---------cccccchHHHHHHHHHHHHHhccCCCccccChHHHHHH
Confidence 456789999999999999999876643221110 00011258899999999999999999999999999999
Q ss_pred HHh--cccchhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 025209 165 FLA--RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKS 199 (256)
Q Consensus 165 ~l~--G~~~~~~~~~yivaQ~lGailga~l~~~l~~~ 199 (256)
++. +...|.+.|+||++|++|+++|+++++.++.+
T Consensus 253 al~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~ 289 (304)
T 3cn5_A 253 AVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289 (304)
T ss_dssp HHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCC
Confidence 996 34578999999999999999999999887654
No 20
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.53 E-value=1.8e-14 Score=128.94 Aligned_cols=102 Identities=18% Similarity=0.179 Sum_probs=84.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+..+.++.|+++||++++++++.+....... .+ ..++.+|+.+.++++..++.||+.+||||++++
T Consensus 127 ~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~-----------~~--~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GP 193 (266)
T 3d9s_A 127 TTQGQAMVVELILTFQLALCIFASTDSRRTSP-----------VG--SPALSIGLSVTLGHLVGIYFTGCSMNPARSFGP 193 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHCTTCCSC-----------CC--CHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcccCCCc-----------cc--hHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 35678999999999999999988753221110 01 268899999999999999999999999999999
Q ss_pred HHhcccchhh-HHHHHHHHhHHHHHHHHHHHHHhhhh
Q 025209 165 FLARKVSLVR-AVMYMVAQCLGAISGVGLVKAFQKSY 200 (256)
Q Consensus 165 ~l~G~~~~~~-~~~yivaQ~lGailga~l~~~l~~~~ 200 (256)
.+... .|.+ .|+||++|++|+++|+++++.++.++
T Consensus 194 al~~~-~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~ 229 (266)
T 3d9s_A 194 AVVMN-RFSPAHWVFWVGPIVGAVLAAILYFYLLFPN 229 (266)
T ss_dssp HHHHT-CCCTTHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHcC-CcccCEeeeehHHHHHHHHHHHHHHHHhCCC
Confidence 99654 6788 99999999999999999999887543
No 21
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.52 E-value=2.3e-14 Score=131.82 Aligned_cols=101 Identities=18% Similarity=0.228 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+..+.++.|+++||+|++++++.+....... . -..++++|+.+.++++..++.||+.+||||++++
T Consensus 171 ~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~-----------~--~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGP 237 (340)
T 3iyz_A 171 LTAGHGLLVELIITFQLVFTIFASCDDKRTDV-----------T--GSVALAIGFSVAIGHLFAINYTGASMNPARSFGP 237 (340)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhcCccCCc-----------c--cchhhHHHHHHHHHHHhccCCccccccHHHHHHH
Confidence 45678999999999999999987654321110 0 1157889999888888888999999999999999
Q ss_pred HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 025209 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKS 199 (256)
Q Consensus 165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~ 199 (256)
++... .|.+.|+||++|++|+++|+++++.++.+
T Consensus 238 al~~~-~w~~~WVywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 238 AVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred HHHcc-CCCcEeehhHHHHHHHHHHHHHHHHHhCC
Confidence 99644 58899999999999999999999988743
No 22
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.3e-14 Score=125.18 Aligned_cols=98 Identities=21% Similarity=0.308 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHH
Q 025209 86 SFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLF 165 (256)
Q Consensus 86 ~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~ 165 (256)
+..+.++.|+++||++++++++.+....... .+ ..++.+|+.+.+.++..++.||+.+||||++++.
T Consensus 124 s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~-----------~~--~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~ 190 (223)
T 3gd8_A 124 TAGHGLLVELIITFQLVFTIFASCDSKRTDV-----------TG--SIALAIGFSVAIGHLFAINYTGASMNPARSFGPA 190 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCTTCSCC-----------CS--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccccCCc-----------cC--CccHHHHHHHHHHHHhccCCccccccHHHHHHHH
Confidence 4578999999999999999887653221110 01 1588899888878888888999999999999999
Q ss_pred HhcccchhhHHHHHHHHhHHHHHHHHHHHHHh
Q 025209 166 LARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ 197 (256)
Q Consensus 166 l~G~~~~~~~~~yivaQ~lGailga~l~~~l~ 197 (256)
+... .|.+.|+||++|++|+++|+++++.++
T Consensus 191 l~~~-~w~~~Wvy~vgP~~Ga~la~~~y~~~~ 221 (223)
T 3gd8_A 191 VIMG-NWENHWIYWVGPIIGAVLAGGLYEYVF 221 (223)
T ss_dssp HHHT-CCTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhc-CCCcEEeehhHHHHHHHHHHHHHHHHc
Confidence 9644 588999999999999999999998765
No 23
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.51 E-value=2.6e-14 Score=129.90 Aligned_cols=101 Identities=19% Similarity=0.255 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+..+.++.|+++||++++++++.+...... . .+ ..++.+|+.+.+.++..++.||+.+||||++++
T Consensus 132 ~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~-~----------~~--~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GP 198 (301)
T 2zz9_A 132 LTAGHGLLVELIITFQLVFTIFASCDDKRTD-V----------TG--SVALAIGFSVAIGHLFAINYTGASMNPARSFGP 198 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHSCSSSSC-C----------SS--CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCCCC-c----------cc--hHhHHHHHHHHHHHHHhcCCcccccCcHHHHHH
Confidence 4567899999999999999998765322111 0 01 268899999988888888999999999999999
Q ss_pred HHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 025209 165 FLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQKS 199 (256)
Q Consensus 165 ~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~~ 199 (256)
++... .|.+.|+||++|++|+++|+++++.++.+
T Consensus 199 al~~~-~w~~~WVy~vgPiiGailaa~ly~~l~~~ 232 (301)
T 2zz9_A 199 AVIMG-NWENHWIYWVGPIIGAVLAGALYEYVFCP 232 (301)
T ss_dssp HHHHC-CCTTTTHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHhC-CCcceeeeeeHHHHHHHHHHHHHHHHhCC
Confidence 99754 68899999999999999999999988753
No 24
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.49 E-value=6e-14 Score=126.39 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHH
Q 025209 85 WSFYRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGL 164 (256)
Q Consensus 85 ~~l~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~ 164 (256)
.+.++.++.|+++||++++++++.+....... ..-..++.+|+.++.+++..++.||+.+||||++++
T Consensus 143 ~s~~~~~~~E~i~Tf~Lv~~il~~~d~~~~~~------------~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GP 210 (281)
T 1ldf_A 143 INFVQAFAVEMVITAILMGLILALTDDGNGVP------------RGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGP 210 (281)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCTTSSSC------------CGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc------------ccchHHHHHHHHHHHHHHhcccccccccCcHhhHHH
Confidence 45689999999999999999988654221100 012378999999999999999999999999999999
Q ss_pred HHhc------ccchh------hHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 025209 165 FLAR------KVSLV------RAVMYMVAQCLGAISGVGLVKAFQKSYY 201 (256)
Q Consensus 165 ~l~G------~~~~~------~~~~yivaQ~lGailga~l~~~l~~~~~ 201 (256)
.+.. ...|. ..|+||++|++|+++|+++++.++.++.
T Consensus 211 al~~~~~g~g~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~~ 259 (281)
T 1ldf_A 211 KVFAWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHL 259 (281)
T ss_dssp HHHHHHTTTTTHHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred HHHHHhcccccccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCccC
Confidence 8842 22343 6899999999999999999999876543
No 25
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.47 E-value=4.9e-14 Score=125.53 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHh
Q 025209 88 YRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA 167 (256)
Q Consensus 88 ~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~ 167 (256)
.+.++.|+++||++++++++.+..+..... ..+.+++.+|+.++.+++..++.||+.+||||++++++.
T Consensus 135 ~~~~~~E~i~Tf~Lv~~i~~~~d~~~~~~~-----------~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~ 203 (258)
T 3c02_A 135 TGAFFNELILTGILLLVILVVVDENICGKF-----------HILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFL 203 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHCSC-----------CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCCcc-----------cccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHH
Confidence 458999999999999999887543211000 112228999999999999999999999999999999985
Q ss_pred c-----ccch----hhHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 025209 168 R-----KVSL----VRAVMYMVAQCLGAISGVGLVKAFQKSYY 201 (256)
Q Consensus 168 G-----~~~~----~~~~~yivaQ~lGailga~l~~~l~~~~~ 201 (256)
. ...| .+.|+||++|++|+++|+++++.++.++.
T Consensus 204 ~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~ 246 (258)
T 3c02_A 204 SLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLV 246 (258)
T ss_dssp HHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3 2345 44899999999999999999998876554
No 26
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.45 E-value=8.1e-14 Score=124.99 Aligned_cols=98 Identities=19% Similarity=0.152 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHhheeeccccCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHh
Q 025209 88 YRALIAEFIATLLFLYVTVLTVIGYKSQTDPAKNVDGCAGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLA 167 (256)
Q Consensus 88 ~r~~laEfigT~lfvf~~~g~~~~~~~~~~~~~~~~~~~~~~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~ 167 (256)
.+.++.|+++||++++++++.+....... .-..++.+|+.+.+.++..++.||+.+||||++++.+.
T Consensus 138 ~~~~~~E~i~T~~Lv~~i~~~~d~~~~~~-------------~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~ 204 (271)
T 1j4n_A 138 GQGLGIEIIGTLQLVLCVLATTDRRRRDL-------------GGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVI 204 (271)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHTCSSCCCC-------------CSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCCCc-------------cccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHH
Confidence 46788999999999999887643221110 01268899999988888878899999999999999986
Q ss_pred cccchhhHHHHHHHHhHHHHHHHHHHHHHhhh
Q 025209 168 RKVSLVRAVMYMVAQCLGAISGVGLVKAFQKS 199 (256)
Q Consensus 168 G~~~~~~~~~yivaQ~lGailga~l~~~l~~~ 199 (256)
.. .|.+.|+||++|++|+++|+++++.++.+
T Consensus 205 ~~-~~~~~wv~~vgP~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 205 TH-NFQDHWIFWVGPFIGAALAVLIYDFILAP 235 (271)
T ss_dssp TT-CCTTTTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hC-CCcceeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 54 67899999999999999999999987654
No 27
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=39.85 E-value=2.7 Score=37.61 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.5
Q ss_pred hcCCCCCCCChHHHHHHHHh
Q 025209 148 TAGISGGHINPAVTFGLFLA 167 (256)
Q Consensus 148 ~~~vSGahlNPAvTla~~l~ 167 (256)
.++-||||++||.+++-.+.
T Consensus 8 ~~GGTgGHi~palala~~L~ 27 (365)
T 3s2u_A 8 MAGGTGGHVFPALACAREFQ 27 (365)
T ss_dssp ECCSSHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHHHHHHH
Confidence 34458899999999999884
No 28
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=32.46 E-value=2.5e+02 Score=24.41 Aligned_cols=107 Identities=11% Similarity=0.118 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHh--hhhhhhcCCC
Q 025209 130 ILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQ--KSYYTRYGGG 207 (256)
Q Consensus 130 ~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~--~~~~~~~~~~ 207 (256)
.+..++.+++.+.++++.-...--+ |--.+++ .+.++.+|.+++--|.-=.+|=++|++++-+++ ...+...++.
T Consensus 68 ~ll~g~~F~vGL~lVvl~G~ELFTg--n~l~~~a-~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 68 KLVGGICFSLGLILCVVCGADLFTS--TVLIVVA-KASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHHTHHHHHHHHHTCCCTTT--THHHHHH-HTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhCcccccc--chHHHHH-HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 4556777777777777776665433 3222322 447888887765444444444444444433221 1111110000
Q ss_pred -------ccccCCCCchHHHHHHHHHHHHHHHHHHHHhc
Q 025209 208 -------ANELADGYSTGVGLAAEIIGTFVLVYTVFSAT 239 (256)
Q Consensus 208 -------~~~~~~~~s~~~af~~E~v~TfiLv~~il~~~ 239 (256)
...-..+.+..+.|+-=+++.++..+.++...
T Consensus 145 ~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaVw~~~ 183 (285)
T 3kcu_A 145 WGLNVLQTADHKVHHTFIEAVCLGILANLMVCLAVWMSY 183 (285)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112345778899999999999988888654
No 29
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=31.57 E-value=12 Score=20.66 Aligned_cols=14 Identities=36% Similarity=0.311 Sum_probs=8.1
Q ss_pred eeccccCCchhhHh
Q 025209 4 FISHTKNKPKKRKR 17 (256)
Q Consensus 4 ~~~~~~~~~~~~~~ 17 (256)
=||.-+-|||.||.
T Consensus 11 dinapkpkkk~rws 24 (26)
T 2yvc_D 11 DINAPKPKKKQRXX 24 (26)
T ss_pred cccCCCcchhhccc
Confidence 35555666666663
No 30
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=31.41 E-value=1.4e+02 Score=25.87 Aligned_cols=108 Identities=10% Similarity=0.084 Sum_probs=58.9
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHhcccchhhHHHHHHHHhHHHHHHHHHHHHHhh--hhhhhcCC
Q 025209 129 GILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAISGVGLVKAFQK--SYYTRYGG 206 (256)
Q Consensus 129 ~~l~iala~Gl~l~~~i~~~~~vSGahlNPAvTla~~l~G~~~~~~~~~yivaQ~lGailga~l~~~l~~--~~~~~~~~ 206 (256)
..+..++.+++.+.++++.-...--+ |=......++.++.+|.+++--|.-=.+|=++|++++-.++. ...+..+.
T Consensus 63 ~~ll~g~~F~~Gl~lVvl~g~eLfTg--n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~ 140 (268)
T 3tds_E 63 TKIVMGLSFAIALSLVIMTGTELFTG--NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPV 140 (268)
T ss_dssp HHHHHHHTCTHHHHHHHHHTCCCHHH--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccc--chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHH
Confidence 34556677777776666664433211 333222345678889888776666656666666655443331 11100000
Q ss_pred C-----ccccCCCCchHHHHHHHHHHHHHHHHHHHHh
Q 025209 207 G-----ANELADGYSTGVGLAAEIIGTFVLVYTVFSA 238 (256)
Q Consensus 207 ~-----~~~~~~~~s~~~af~~E~v~TfiLv~~il~~ 238 (256)
. ...-..+.+..+.|+-=+++.++..+.++..
T Consensus 141 ~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaVw~~ 177 (268)
T 3tds_E 141 AEFFANTAASKASMPFTALFFRGILCNILVCVSVLCS 177 (268)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000123466788888888888888877754
Done!