Query 025211
Match_columns 256
No_of_seqs 156 out of 2023
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 03:39:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025211.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025211hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2890 HemK Methylase of poly 100.0 3.7E-27 8E-32 198.8 21.6 188 10-210 82-275 (280)
2 KOG3191 Predicted N6-DNA-methy 100.0 9.7E-27 2.1E-31 177.6 19.1 194 14-213 15-208 (209)
3 PRK14966 unknown domain/N5-glu 100.0 2.9E-26 6.3E-31 199.9 22.3 189 11-210 225-417 (423)
4 PRK01544 bifunctional N5-gluta 99.9 4.8E-26 1E-30 206.7 21.8 195 10-212 85-307 (506)
5 COG4123 Predicted O-methyltran 99.9 3.5E-26 7.6E-31 186.5 17.6 194 11-219 20-218 (248)
6 TIGR00536 hemK_fam HemK family 99.9 8.4E-25 1.8E-29 185.9 21.9 190 10-209 84-280 (284)
7 TIGR03704 PrmC_rel_meth putati 99.9 8.8E-25 1.9E-29 182.2 20.0 179 10-197 56-239 (251)
8 TIGR00537 hemK_rel_arch HemK-r 99.9 7.3E-24 1.6E-28 168.5 20.6 178 17-211 1-178 (179)
9 KOG2904 Predicted methyltransf 99.9 5.8E-24 1.3E-28 172.2 18.7 195 11-210 117-326 (328)
10 TIGR03533 L3_gln_methyl protei 99.9 3.6E-23 7.9E-28 175.4 21.3 172 11-193 92-269 (284)
11 PRK09328 N5-glutamine S-adenos 99.9 7.4E-23 1.6E-27 173.4 21.0 188 10-208 79-272 (275)
12 TIGR03534 RF_mod_PrmC protein- 99.9 1.1E-22 2.5E-27 169.9 20.7 185 10-206 59-249 (251)
13 PRK11805 N5-glutamine S-adenos 99.9 1.2E-22 2.6E-27 173.8 19.9 172 11-193 104-281 (307)
14 PRK14967 putative methyltransf 99.9 4.3E-22 9.4E-27 163.6 21.0 179 9-199 7-185 (223)
15 PLN02672 methionine S-methyltr 99.9 2.3E-22 5E-27 193.0 19.7 183 10-200 88-305 (1082)
16 PRK14968 putative methyltransf 99.9 3.9E-21 8.5E-26 153.6 20.8 183 14-212 2-187 (188)
17 PF05175 MTS: Methyltransferas 99.9 1.5E-21 3.3E-26 153.7 16.8 141 11-181 4-148 (170)
18 PRK15001 SAM-dependent 23S rib 99.8 6.1E-19 1.3E-23 153.9 19.3 168 11-215 201-375 (378)
19 COG2813 RsmC 16S RNA G1207 met 99.8 9.3E-19 2E-23 145.8 17.0 165 11-213 131-299 (300)
20 PF13659 Methyltransf_26: Meth 99.8 3.3E-19 7.1E-24 131.7 12.6 114 43-174 1-116 (117)
21 PRK09489 rsmC 16S ribosomal RN 99.8 7.3E-18 1.6E-22 146.2 19.3 136 11-177 169-307 (342)
22 PRK11727 23S rRNA mA1618 methy 99.8 1.6E-17 3.5E-22 141.8 20.1 197 5-207 71-302 (321)
23 TIGR00138 gidB 16S rRNA methyl 99.8 1E-17 2.2E-22 133.0 17.4 158 18-208 18-179 (181)
24 COG2264 PrmA Ribosomal protein 99.8 3E-17 6.4E-22 137.6 17.6 149 24-213 149-299 (300)
25 PRK00107 gidB 16S rRNA methylt 99.8 8.7E-17 1.9E-21 128.0 19.5 135 42-209 45-184 (187)
26 TIGR01177 conserved hypothetic 99.8 4.7E-17 1E-21 141.2 18.3 155 17-198 160-315 (329)
27 COG2226 UbiE Methylase involve 99.7 2.1E-17 4.5E-22 135.1 13.1 121 41-188 50-171 (238)
28 PHA03411 putative methyltransf 99.7 4.1E-17 8.9E-22 135.3 14.9 139 41-193 63-209 (279)
29 PF12847 Methyltransf_18: Meth 99.7 3.4E-17 7.3E-22 119.9 12.6 108 42-173 1-111 (112)
30 TIGR02752 MenG_heptapren 2-hep 99.7 5E-16 1.1E-20 128.2 19.3 136 41-202 44-222 (231)
31 PF13847 Methyltransf_31: Meth 99.7 4.5E-17 9.7E-22 126.0 12.1 110 41-175 2-112 (152)
32 PRK00121 trmB tRNA (guanine-N( 99.7 7.9E-17 1.7E-21 130.3 14.0 137 41-194 39-177 (202)
33 PF01209 Ubie_methyltran: ubiE 99.7 3E-17 6.5E-22 135.2 11.7 120 41-186 46-166 (233)
34 PRK08287 cobalt-precorrin-6Y C 99.7 1.2E-15 2.6E-20 122.0 19.7 122 41-194 30-152 (187)
35 COG2242 CobL Precorrin-6B meth 99.7 8.1E-16 1.8E-20 119.7 16.9 122 40-192 32-154 (187)
36 PF06325 PrmA: Ribosomal prote 99.7 2.1E-16 4.5E-21 133.7 14.7 135 24-197 148-282 (295)
37 PLN02233 ubiquinone biosynthes 99.7 2.1E-15 4.6E-20 126.7 18.8 108 41-174 72-183 (261)
38 PRK13168 rumA 23S rRNA m(5)U19 99.7 1.3E-15 2.8E-20 137.2 18.4 154 11-199 267-425 (443)
39 PRK15128 23S rRNA m(5)C1962 me 99.7 6E-16 1.3E-20 136.5 15.6 147 42-205 220-376 (396)
40 TIGR00091 tRNA (guanine-N(7)-) 99.7 5.6E-16 1.2E-20 124.6 14.1 134 42-192 16-152 (194)
41 PRK10901 16S rRNA methyltransf 99.7 2E-15 4.4E-20 135.3 19.1 145 41-192 243-395 (427)
42 PRK11207 tellurite resistance 99.7 7E-16 1.5E-20 124.4 14.6 104 42-173 30-134 (197)
43 COG2227 UbiG 2-polyprenyl-3-me 99.7 2E-16 4.4E-21 127.4 10.7 113 41-182 58-170 (243)
44 PRK14902 16S rRNA methyltransf 99.7 3.2E-15 6.9E-20 134.8 19.7 166 15-193 229-403 (444)
45 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1.6E-15 3.5E-20 143.3 18.2 148 42-206 538-688 (702)
46 PLN02244 tocopherol O-methyltr 99.7 3.4E-15 7.4E-20 130.0 18.8 106 41-174 117-224 (340)
47 PRK11036 putative S-adenosyl-L 99.7 2.8E-15 6E-20 125.7 16.1 106 41-174 43-150 (255)
48 PRK00517 prmA ribosomal protei 99.7 7.7E-15 1.7E-19 122.6 18.7 133 24-198 106-238 (250)
49 PRK00377 cbiT cobalt-precorrin 99.7 1.5E-14 3.3E-19 116.7 19.6 127 41-195 39-167 (198)
50 TIGR00477 tehB tellurite resis 99.7 9.7E-16 2.1E-20 123.3 12.0 104 42-173 30-133 (195)
51 PRK10909 rsmD 16S rRNA m(2)G96 99.7 4.3E-15 9.4E-20 119.3 15.6 124 21-174 34-160 (199)
52 PLN02490 MPBQ/MSBQ methyltrans 99.7 3.1E-14 6.7E-19 122.8 21.6 148 20-198 93-256 (340)
53 COG1041 Predicted DNA modifica 99.7 5.4E-15 1.2E-19 125.6 16.4 156 17-200 175-332 (347)
54 PHA03412 putative methyltransf 99.7 2.5E-15 5.5E-20 122.0 13.6 129 14-168 30-158 (241)
55 TIGR00446 nop2p NOL1/NOP2/sun 99.7 5.8E-15 1.3E-19 124.2 16.3 158 17-188 52-216 (264)
56 PLN02396 hexaprenyldihydroxybe 99.7 5.3E-15 1.2E-19 127.0 16.3 127 41-196 130-287 (322)
57 COG2263 Predicted RNA methylas 99.7 1.9E-14 4.1E-19 111.8 17.6 124 41-197 44-167 (198)
58 PF01170 UPF0020: Putative RNA 99.7 5.8E-15 1.3E-19 117.0 15.0 156 18-196 7-169 (179)
59 PRK15451 tRNA cmo(5)U34 methyl 99.7 2.2E-15 4.8E-20 125.7 13.2 109 41-174 55-165 (247)
60 PRK14901 16S rRNA methyltransf 99.6 1.1E-14 2.5E-19 130.7 18.3 167 41-213 251-432 (434)
61 TIGR00406 prmA ribosomal prote 99.6 9.7E-15 2.1E-19 124.4 16.8 133 24-195 146-280 (288)
62 PRK14904 16S rRNA methyltransf 99.6 2.4E-14 5.1E-19 129.1 19.8 164 14-192 228-400 (445)
63 PRK11873 arsM arsenite S-adeno 99.6 1.6E-14 3.5E-19 122.2 17.6 130 41-196 76-228 (272)
64 PF13649 Methyltransf_25: Meth 99.6 1E-15 2.2E-20 110.1 8.1 100 46-167 1-101 (101)
65 TIGR02469 CbiT precorrin-6Y C5 99.6 2.1E-14 4.6E-19 106.6 15.2 117 25-173 5-122 (124)
66 PRK04266 fibrillarin; Provisio 99.6 9.3E-14 2E-18 113.9 20.3 146 26-199 56-211 (226)
67 PRK07402 precorrin-6B methylas 99.6 7.4E-14 1.6E-18 112.5 19.3 132 25-189 26-158 (196)
68 PRK14121 tRNA (guanine-N(7)-)- 99.6 9.6E-15 2.1E-19 127.2 14.9 130 41-189 121-251 (390)
69 PRK03522 rumB 23S rRNA methylu 99.6 3.2E-14 6.8E-19 122.8 17.8 150 11-197 143-295 (315)
70 PRK10258 biotin biosynthesis p 99.6 1.4E-14 3E-19 121.2 14.7 126 25-186 28-153 (251)
71 PTZ00098 phosphoethanolamine N 99.6 2.1E-14 4.5E-19 120.8 15.6 130 13-174 28-157 (263)
72 PRK14103 trans-aconitate 2-met 99.6 6E-15 1.3E-19 123.7 12.3 99 41-173 28-126 (255)
73 TIGR00740 methyltransferase, p 99.6 2.6E-14 5.7E-19 118.6 15.6 109 41-174 52-162 (239)
74 TIGR00563 rsmB ribosomal RNA s 99.6 8.1E-14 1.8E-18 125.0 19.9 142 41-189 237-387 (426)
75 TIGR02085 meth_trns_rumB 23S r 99.6 3.7E-14 8E-19 125.0 17.1 151 11-198 203-356 (374)
76 PF03602 Cons_hypoth95: Conser 99.6 1.8E-14 4E-19 114.3 13.5 129 16-176 19-156 (183)
77 KOG1271 Methyltransferases [Ge 99.6 1.5E-14 3.3E-19 111.1 12.0 150 24-193 48-200 (227)
78 PRK14903 16S rRNA methyltransf 99.6 5.5E-14 1.2E-18 125.9 16.9 130 41-177 236-370 (431)
79 PRK01683 trans-aconitate 2-met 99.6 1E-14 2.2E-19 122.5 11.2 102 41-174 30-131 (258)
80 TIGR00080 pimt protein-L-isoas 99.6 2.6E-14 5.6E-19 116.8 13.3 114 25-173 63-177 (215)
81 PF08241 Methyltransf_11: Meth 99.6 3.9E-15 8.5E-20 105.1 7.3 95 47-171 1-95 (95)
82 PLN02336 phosphoethanolamine N 99.6 8.5E-14 1.8E-18 126.8 17.5 106 41-174 265-370 (475)
83 smart00828 PKS_MT Methyltransf 99.6 5.6E-14 1.2E-18 115.5 14.7 128 44-199 1-145 (224)
84 PRK13944 protein-L-isoaspartat 99.6 4.3E-14 9.4E-19 114.6 13.7 114 25-173 58-173 (205)
85 PRK12335 tellurite resistance 99.6 1.9E-14 4E-19 122.7 11.7 104 42-173 120-223 (287)
86 PF02384 N6_Mtase: N-6 DNA Met 99.6 2E-14 4.2E-19 124.0 12.0 190 16-215 27-234 (311)
87 PRK06922 hypothetical protein; 99.6 3.1E-14 6.6E-19 130.3 13.1 121 42-174 418-538 (677)
88 PF02353 CMAS: Mycolic acid cy 99.6 6.3E-14 1.4E-18 118.0 13.9 106 40-174 60-167 (273)
89 TIGR00452 methyltransferase, p 99.6 3.2E-13 6.9E-18 115.6 18.1 129 40-197 119-272 (314)
90 COG1092 Predicted SAM-dependen 99.6 8.7E-14 1.9E-18 121.5 14.7 143 42-202 217-370 (393)
91 TIGR00479 rumA 23S rRNA (uraci 99.6 2.5E-13 5.5E-18 122.1 17.7 154 11-198 262-420 (431)
92 PRK05031 tRNA (uracil-5-)-meth 99.6 2.1E-13 4.6E-18 119.6 16.4 145 16-198 183-343 (362)
93 PRK08317 hypothetical protein; 99.6 4.5E-13 9.9E-18 110.7 17.6 121 25-174 5-125 (241)
94 PF03848 TehB: Tellurite resis 99.6 6E-14 1.3E-18 111.3 11.6 104 42-173 30-133 (192)
95 PTZ00146 fibrillarin; Provisio 99.5 2E-12 4.3E-17 108.6 21.3 170 17-213 106-287 (293)
96 TIGR00095 RNA methyltransferas 99.5 2.8E-13 6E-18 108.3 15.4 105 42-173 49-159 (189)
97 PF02390 Methyltransf_4: Putat 99.5 1.2E-13 2.5E-18 110.9 12.9 132 41-189 16-149 (195)
98 KOG1540 Ubiquinone biosynthesi 99.5 2.6E-13 5.6E-18 109.7 14.7 131 40-193 98-234 (296)
99 TIGR02072 BioC biotin biosynth 99.5 2.2E-13 4.7E-18 112.7 14.9 126 25-180 17-142 (240)
100 PRK13942 protein-L-isoaspartat 99.5 1.2E-13 2.7E-18 112.5 13.1 115 24-173 61-176 (212)
101 COG2519 GCD14 tRNA(1-methylade 99.5 2.2E-13 4.7E-18 110.8 13.8 123 41-195 93-217 (256)
102 PLN02585 magnesium protoporphy 99.5 2.8E-13 6.1E-18 116.1 15.4 102 16-128 118-225 (315)
103 PRK15068 tRNA mo(5)U34 methylt 99.5 8.1E-13 1.8E-17 114.1 18.0 138 29-198 112-274 (322)
104 PRK00216 ubiE ubiquinone/menaq 99.5 1.3E-12 2.8E-17 108.1 18.4 107 41-174 50-159 (239)
105 PF08242 Methyltransf_12: Meth 99.5 2.8E-15 6E-20 107.4 1.6 98 47-169 1-99 (99)
106 PF08704 GCD14: tRNA methyltra 99.5 3E-13 6.5E-18 111.6 13.8 128 41-197 39-170 (247)
107 COG2230 Cfa Cyclopropane fatty 99.5 4.6E-13 9.9E-18 111.6 14.9 106 40-174 70-177 (283)
108 PRK04457 spermidine synthase; 99.5 9.7E-13 2.1E-17 110.5 16.8 129 41-192 65-196 (262)
109 COG4106 Tam Trans-aconitate me 99.5 4.9E-14 1.1E-18 111.3 8.2 107 38-176 26-132 (257)
110 PLN02781 Probable caffeoyl-CoA 99.5 4.7E-13 1E-17 110.6 14.2 104 41-171 67-176 (234)
111 TIGR03438 probable methyltrans 99.5 3E-13 6.6E-18 115.9 13.4 145 6-174 29-178 (301)
112 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 2.7E-12 5.8E-17 105.1 17.5 106 41-174 38-144 (223)
113 TIGR03587 Pse_Me-ase pseudamin 99.5 4.3E-13 9.3E-18 108.5 12.0 127 15-173 14-142 (204)
114 TIGR02716 C20_methyl_CrtF C-20 99.5 1.9E-12 4E-17 111.4 16.6 106 41-174 148-255 (306)
115 KOG1270 Methyltransferases [Co 99.5 4.7E-14 1E-18 114.6 6.0 103 43-177 90-199 (282)
116 PRK11188 rrmJ 23S rRNA methylt 99.5 2.1E-12 4.6E-17 104.9 15.7 130 41-196 50-187 (209)
117 TIGR02021 BchM-ChlM magnesium 99.5 9.3E-13 2E-17 107.9 13.6 101 41-171 54-156 (219)
118 PF13489 Methyltransf_23: Meth 99.5 8.8E-13 1.9E-17 102.3 12.7 98 41-176 21-118 (161)
119 PRK11705 cyclopropane fatty ac 99.5 1.1E-12 2.3E-17 115.9 14.4 103 41-174 166-268 (383)
120 PF10672 Methyltrans_SAM: S-ad 99.5 1.8E-12 4E-17 109.1 15.1 128 42-189 123-255 (286)
121 PRK00312 pcm protein-L-isoaspa 99.5 1.4E-12 3.1E-17 106.3 13.9 112 24-173 63-175 (212)
122 PRK11088 rrmA 23S rRNA methylt 99.5 6E-13 1.3E-17 112.6 12.0 111 41-186 84-194 (272)
123 TIGR02987 met_A_Alw26 type II 99.5 4.7E-13 1E-17 123.1 12.3 172 15-189 4-216 (524)
124 COG0742 N6-adenine-specific me 99.5 1.3E-12 2.7E-17 102.5 12.7 131 13-174 16-155 (187)
125 PRK06202 hypothetical protein; 99.5 9.9E-13 2.2E-17 108.7 12.9 101 41-164 59-159 (232)
126 PLN02476 O-methyltransferase 99.5 2.7E-12 5.8E-17 107.6 14.6 103 42-171 118-226 (278)
127 TIGR02143 trmA_only tRNA (urac 99.5 4.1E-12 8.9E-17 111.1 16.4 143 17-197 175-333 (353)
128 PRK05134 bifunctional 3-demeth 99.4 8.7E-12 1.9E-16 103.1 17.2 106 41-174 47-152 (233)
129 PRK11783 rlmL 23S rRNA m(2)G24 99.4 5.9E-12 1.3E-16 119.2 18.2 139 20-174 170-348 (702)
130 PRK00811 spermidine synthase; 99.4 5.1E-12 1.1E-16 107.3 16.0 109 41-173 75-191 (283)
131 PRK05785 hypothetical protein; 99.4 3.3E-12 7.3E-17 105.0 14.5 90 42-166 51-140 (226)
132 PF01135 PCMT: Protein-L-isoas 99.4 1.1E-12 2.3E-17 106.2 11.2 114 25-173 58-172 (209)
133 smart00138 MeTrc Methyltransfe 99.4 6.3E-13 1.4E-17 111.8 9.9 127 24-171 80-240 (264)
134 COG2265 TrmA SAM-dependent met 99.4 1.7E-12 3.7E-17 115.5 13.1 155 9-197 261-419 (432)
135 PLN03075 nicotianamine synthas 99.4 3.9E-12 8.5E-17 107.2 14.2 108 41-173 122-233 (296)
136 TIGR03840 TMPT_Se_Te thiopurin 99.4 1.5E-12 3.3E-17 105.9 11.4 121 24-174 20-153 (213)
137 COG4122 Predicted O-methyltran 99.4 4.9E-12 1.1E-16 102.2 13.6 117 22-171 45-164 (219)
138 PRK07580 Mg-protoporphyrin IX 99.4 1.3E-11 2.9E-16 101.6 16.5 113 28-170 49-163 (230)
139 PF02475 Met_10: Met-10+ like- 99.4 1.8E-12 4E-17 103.8 10.8 122 11-171 77-200 (200)
140 KOG4300 Predicted methyltransf 99.4 1.8E-12 3.9E-17 101.8 10.4 117 43-186 77-195 (252)
141 TIGR01983 UbiG ubiquinone bios 99.4 8.2E-12 1.8E-16 102.5 15.1 105 42-174 45-150 (224)
142 KOG1541 Predicted protein carb 99.4 6.5E-12 1.4E-16 99.6 13.4 161 25-207 34-198 (270)
143 PF05958 tRNA_U5-meth_tr: tRNA 99.4 1.2E-12 2.5E-17 114.5 10.1 104 11-124 167-287 (352)
144 PF05971 Methyltransf_10: Prot 99.4 8.9E-12 1.9E-16 105.0 14.7 182 5-193 62-277 (299)
145 smart00650 rADc Ribosomal RNA 99.4 4.5E-12 9.8E-17 99.7 12.2 78 41-127 12-89 (169)
146 PRK11933 yebU rRNA (cytosine-C 99.4 2.7E-11 5.9E-16 109.0 18.6 153 15-178 90-247 (470)
147 PLN02336 phosphoethanolamine N 99.4 2.9E-12 6.2E-17 116.7 12.1 126 41-192 36-176 (475)
148 COG0220 Predicted S-adenosylme 99.4 3.9E-12 8.4E-17 103.9 11.3 122 43-181 49-172 (227)
149 COG0116 Predicted N6-adenine-s 99.4 7.1E-12 1.5E-16 108.1 13.2 136 21-174 173-345 (381)
150 PF01596 Methyltransf_3: O-met 99.4 6.9E-12 1.5E-16 101.2 12.2 103 42-171 45-153 (205)
151 PRK13943 protein-L-isoaspartat 99.4 1.2E-11 2.6E-16 106.4 14.3 113 26-173 67-180 (322)
152 PRK01581 speE spermidine synth 99.4 1.4E-10 2.9E-15 100.2 20.7 136 41-197 149-296 (374)
153 COG2518 Pcm Protein-L-isoaspar 99.4 5.6E-12 1.2E-16 100.4 10.8 110 26-173 59-169 (209)
154 PF05401 NodS: Nodulation prot 99.4 1.7E-11 3.6E-16 96.5 12.9 145 41-213 42-196 (201)
155 PF07021 MetW: Methionine bios 99.4 1.4E-11 3E-16 96.8 12.3 102 41-177 12-113 (193)
156 PRK13255 thiopurine S-methyltr 99.4 6.3E-12 1.4E-16 102.6 10.5 104 41-173 36-155 (218)
157 TIGR00417 speE spermidine synt 99.4 5.8E-11 1.3E-15 100.3 16.7 112 41-174 71-187 (270)
158 TIGR00438 rrmJ cell division p 99.3 4.7E-11 1E-15 95.5 15.1 129 41-195 31-167 (188)
159 PLN02366 spermidine synthase 99.3 7.4E-11 1.6E-15 101.0 16.9 111 41-172 90-205 (308)
160 KOG3420 Predicted RNA methylas 99.3 7.6E-12 1.6E-16 92.8 8.9 83 41-130 47-129 (185)
161 PRK04338 N(2),N(2)-dimethylgua 99.3 3E-11 6.5E-16 106.4 14.2 126 15-173 31-158 (382)
162 COG4976 Predicted methyltransf 99.3 2.4E-12 5.1E-17 102.7 6.5 126 41-199 124-266 (287)
163 COG0144 Sun tRNA and rRNA cyto 99.3 2.5E-10 5.4E-15 99.9 19.0 166 13-189 133-307 (355)
164 cd02440 AdoMet_MTases S-adenos 99.3 2.6E-11 5.6E-16 86.0 10.4 102 45-172 1-103 (107)
165 PLN02589 caffeoyl-CoA O-methyl 99.3 6.2E-11 1.3E-15 98.2 13.9 103 42-171 79-188 (247)
166 TIGR02081 metW methionine bios 99.3 7.3E-11 1.6E-15 94.9 13.6 78 42-130 13-90 (194)
167 PF08003 Methyltransf_9: Prote 99.3 2.1E-10 4.5E-15 96.1 16.5 139 29-198 105-267 (315)
168 PRK03612 spermidine synthase; 99.3 1.1E-10 2.4E-15 107.0 16.3 131 41-192 296-438 (521)
169 COG0357 GidB Predicted S-adeno 99.3 8.9E-11 1.9E-15 94.6 13.8 153 18-202 41-199 (215)
170 COG2521 Predicted archaeal met 99.3 2E-11 4.2E-16 97.7 9.2 131 40-194 132-273 (287)
171 COG2520 Predicted methyltransf 99.3 2.5E-10 5.5E-15 98.0 16.6 144 11-193 164-315 (341)
172 PRK01544 bifunctional N5-gluta 99.3 6.9E-11 1.5E-15 107.9 13.1 136 40-192 345-482 (506)
173 PF10294 Methyltransf_16: Puta 99.3 1.5E-10 3.3E-15 91.3 12.9 131 19-175 19-158 (173)
174 PF02527 GidB: rRNA small subu 99.2 3.7E-10 8E-15 89.5 14.6 132 20-184 24-158 (184)
175 COG0286 HsdM Type I restrictio 99.2 6.1E-11 1.3E-15 107.8 11.1 168 15-189 166-347 (489)
176 PRK00274 ksgA 16S ribosomal RN 99.2 3E-10 6.4E-15 96.1 13.3 89 26-127 29-117 (272)
177 KOG2361 Predicted methyltransf 99.2 6.2E-11 1.3E-15 95.4 8.4 124 29-173 55-183 (264)
178 PTZ00338 dimethyladenosine tra 99.2 1.5E-10 3.3E-15 98.5 11.0 91 26-129 23-115 (294)
179 PF09445 Methyltransf_15: RNA 99.2 5.9E-10 1.3E-14 86.1 13.1 131 44-188 1-134 (163)
180 PRK14896 ksgA 16S ribosomal RN 99.2 1.4E-10 3E-15 97.4 10.4 90 25-128 15-104 (258)
181 PRK13256 thiopurine S-methyltr 99.2 3.7E-10 8.1E-15 92.1 11.2 122 24-174 29-164 (226)
182 PF05724 TPMT: Thiopurine S-me 99.2 4.9E-10 1.1E-14 91.4 11.7 130 41-197 36-189 (218)
183 TIGR00308 TRM1 tRNA(guanine-26 99.1 6.6E-09 1.4E-13 91.2 18.9 131 14-173 14-147 (374)
184 PF01189 Nol1_Nop2_Fmu: NOL1/N 99.1 1.9E-09 4.2E-14 91.5 15.0 163 15-189 64-238 (283)
185 PF06080 DUF938: Protein of un 99.1 1.5E-09 3.2E-14 86.5 13.0 124 24-174 11-142 (204)
186 PF05185 PRMT5: PRMT5 arginine 99.1 4.9E-10 1.1E-14 100.5 9.6 106 43-170 187-294 (448)
187 COG3129 Predicted SAM-dependen 99.1 2.4E-10 5.2E-15 91.3 5.5 123 5-131 37-169 (292)
188 PLN02823 spermine synthase 99.0 5.1E-09 1.1E-13 90.6 13.9 112 41-172 102-219 (336)
189 KOG2187 tRNA uracil-5-methyltr 99.0 1.6E-09 3.5E-14 95.9 10.2 134 11-176 353-493 (534)
190 TIGR00755 ksgA dimethyladenosi 99.0 5.3E-09 1.1E-13 87.6 12.6 87 26-126 16-105 (253)
191 KOG1499 Protein arginine N-met 99.0 1.1E-09 2.3E-14 93.1 8.3 104 41-170 59-164 (346)
192 KOG2671 Putative RNA methylase 99.0 2.8E-10 6E-15 95.9 4.3 128 41-175 207-356 (421)
193 KOG2899 Predicted methyltransf 99.0 2.6E-09 5.6E-14 86.1 9.5 124 41-187 57-223 (288)
194 KOG2915 tRNA(1-methyladenosine 99.0 1.5E-08 3.2E-13 83.1 13.5 129 41-198 104-235 (314)
195 PF05891 Methyltransf_PK: AdoM 99.0 4.8E-09 1E-13 84.1 10.1 136 42-203 55-206 (218)
196 KOG1663 O-methyltransferase [S 99.0 2.2E-08 4.7E-13 80.4 13.4 103 42-171 73-181 (237)
197 PF01739 CheR: CheR methyltran 98.9 5.4E-09 1.2E-13 83.8 9.3 127 24-171 12-173 (196)
198 PF03291 Pox_MCEL: mRNA cappin 98.9 8.1E-09 1.7E-13 89.3 10.3 122 42-188 62-198 (331)
199 KOG1661 Protein-L-isoaspartate 98.9 8.1E-09 1.8E-13 81.6 9.3 113 27-171 68-191 (237)
200 PF00891 Methyltransf_2: O-met 98.9 1.3E-08 2.8E-13 84.6 11.1 99 42-174 100-200 (241)
201 PF05148 Methyltransf_8: Hypot 98.9 2.6E-08 5.5E-13 79.3 11.9 126 42-215 72-199 (219)
202 PRK04148 hypothetical protein; 98.9 1.8E-08 3.8E-13 75.2 10.3 83 26-124 3-87 (134)
203 PF01861 DUF43: Protein of unk 98.9 1.5E-07 3.2E-12 76.6 16.1 132 41-200 43-180 (243)
204 KOG3010 Methyltransferase [Gen 98.9 4.3E-09 9.4E-14 84.9 6.6 119 43-191 34-157 (261)
205 KOG1975 mRNA cap methyltransfe 98.9 2.9E-08 6.2E-13 83.3 11.4 139 26-189 101-250 (389)
206 PF01564 Spermine_synth: Sperm 98.9 7.1E-08 1.5E-12 80.3 13.5 115 41-176 75-194 (246)
207 PF04816 DUF633: Family of unk 98.8 2.4E-07 5.2E-12 74.8 15.5 142 46-218 1-144 (205)
208 PLN02232 ubiquinone biosynthes 98.8 6E-08 1.3E-12 75.5 11.6 79 74-175 1-83 (160)
209 PF11599 AviRa: RRNA methyltra 98.8 2.2E-07 4.8E-12 73.8 14.1 122 36-171 45-212 (246)
210 COG3963 Phospholipid N-methylt 98.8 9.1E-08 2E-12 73.1 11.5 127 18-175 29-158 (194)
211 COG0030 KsgA Dimethyladenosine 98.8 3E-08 6.5E-13 82.1 9.7 91 28-129 19-109 (259)
212 TIGR03439 methyl_EasF probable 98.8 1.9E-07 4.1E-12 80.2 14.3 147 6-173 42-197 (319)
213 KOG0820 Ribosomal RNA adenine 98.8 4.2E-08 9.2E-13 80.5 9.2 81 40-130 56-138 (315)
214 COG0421 SpeE Spermidine syntha 98.8 2.4E-07 5.3E-12 78.2 13.8 109 43-173 77-190 (282)
215 COG1352 CheR Methylase of chem 98.8 5.2E-08 1.1E-12 81.5 9.5 127 24-171 78-239 (268)
216 PRK10611 chemotaxis methyltran 98.7 5.7E-08 1.2E-12 82.2 9.2 110 42-171 115-260 (287)
217 KOG3045 Predicted RNA methylas 98.7 2.6E-07 5.7E-12 75.4 12.0 125 42-216 180-306 (325)
218 PF12147 Methyltransf_20: Puta 98.7 1.2E-06 2.6E-11 73.1 15.7 128 41-188 134-265 (311)
219 KOG1122 tRNA and rRNA cytosine 98.7 4.2E-07 9.2E-12 78.9 13.1 143 40-188 239-388 (460)
220 KOG2730 Methylase [General fun 98.7 3.5E-08 7.6E-13 78.5 6.0 101 18-130 76-180 (263)
221 PF01269 Fibrillarin: Fibrilla 98.7 3.6E-06 7.7E-11 67.8 17.0 169 17-212 47-227 (229)
222 PRK10742 putative methyltransf 98.6 7.4E-07 1.6E-11 73.3 12.8 82 42-130 86-179 (250)
223 PRK00050 16S rRNA m(4)C1402 me 98.6 2.1E-07 4.6E-12 79.0 9.7 90 27-123 7-98 (296)
224 KOG1500 Protein arginine N-met 98.6 1.3E-07 2.9E-12 79.8 8.3 102 41-171 176-280 (517)
225 TIGR00478 tly hemolysin TlyA f 98.6 1.1E-07 2.3E-12 78.0 7.6 40 41-85 74-113 (228)
226 COG3897 Predicted methyltransf 98.6 1.4E-07 3.1E-12 73.9 7.3 105 41-177 78-182 (218)
227 PF05219 DREV: DREV methyltran 98.6 5.7E-07 1.2E-11 74.0 10.4 94 42-172 94-187 (265)
228 KOG3201 Uncharacterized conser 98.6 4.4E-07 9.5E-12 69.0 8.4 150 19-195 9-163 (201)
229 PF06962 rRNA_methylase: Putat 98.5 3.7E-06 8E-11 63.2 12.8 94 72-177 1-96 (140)
230 KOG2912 Predicted DNA methylas 98.5 3.9E-06 8.4E-11 70.5 13.8 186 5-196 63-273 (419)
231 PRK00536 speE spermidine synth 98.5 2.9E-06 6.3E-11 70.9 13.0 94 41-171 71-169 (262)
232 PF01728 FtsJ: FtsJ-like methy 98.5 1.2E-06 2.6E-11 69.5 10.3 146 30-199 11-165 (181)
233 PF11968 DUF3321: Putative met 98.5 1.2E-06 2.6E-11 70.2 10.1 134 24-196 32-179 (219)
234 KOG3115 Methyltransferase-like 98.4 7.1E-07 1.5E-11 70.3 6.7 131 42-191 60-201 (249)
235 TIGR00497 hsdM type I restrict 98.4 1E-05 2.3E-10 74.3 14.7 172 16-192 196-379 (501)
236 PF13578 Methyltransf_24: Meth 98.4 5.8E-07 1.2E-11 64.9 4.9 101 47-171 1-103 (106)
237 COG2384 Predicted SAM-dependen 98.4 6.4E-05 1.4E-09 60.4 16.4 127 42-199 16-144 (226)
238 COG4076 Predicted RNA methylas 98.3 8.2E-07 1.8E-11 69.2 5.4 70 42-121 32-102 (252)
239 PF00398 RrnaAD: Ribosomal RNA 98.3 9.4E-06 2E-10 68.3 12.3 92 25-126 16-108 (262)
240 KOG2198 tRNA cytosine-5-methyl 98.3 1.6E-05 3.4E-10 68.5 13.1 149 41-190 154-316 (375)
241 PF09243 Rsm22: Mitochondrial 98.3 1.9E-05 4.2E-10 66.8 12.8 141 28-194 18-164 (274)
242 TIGR01444 fkbM_fam methyltrans 98.2 4.5E-06 9.7E-11 63.4 7.3 58 45-106 1-59 (143)
243 PF07942 N2227: N2227-like pro 98.2 4.2E-05 9.1E-10 64.1 13.4 144 24-196 33-240 (270)
244 PF13679 Methyltransf_32: Meth 98.2 1.4E-05 3E-10 60.8 9.7 78 41-121 24-105 (141)
245 COG0293 FtsJ 23S rRNA methylas 98.2 5.1E-05 1.1E-09 60.7 13.1 127 41-190 44-176 (205)
246 PRK13699 putative methylase; P 98.2 1.3E-05 2.7E-10 66.0 10.0 95 98-199 3-99 (227)
247 PF03141 Methyltransf_29: Puta 98.2 3E-06 6.4E-11 75.6 6.5 135 13-177 87-223 (506)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.2 2E-05 4.4E-10 65.5 10.9 166 26-213 37-256 (256)
249 COG1889 NOP1 Fibrillarin-like 98.2 0.00036 7.9E-09 55.3 17.2 174 9-210 42-227 (231)
250 PF08123 DOT1: Histone methyla 98.2 2.2E-05 4.7E-10 63.5 10.4 123 17-171 22-156 (205)
251 KOG2940 Predicted methyltransf 98.2 2.5E-06 5.5E-11 68.6 4.6 110 41-179 71-180 (325)
252 cd00315 Cyt_C5_DNA_methylase C 98.0 0.00037 8.1E-09 59.1 14.7 150 45-214 2-165 (275)
253 COG1189 Predicted rRNA methyla 98.0 0.0003 6.5E-09 57.3 13.3 146 15-197 56-223 (245)
254 KOG4589 Cell division protein 98.0 5.3E-05 1.1E-09 59.2 8.6 135 41-199 68-210 (232)
255 PF02005 TRM: N2,N2-dimethylgu 98.0 0.00012 2.7E-09 64.6 11.6 131 14-173 18-154 (377)
256 PRK11524 putative methyltransf 97.9 3.6E-05 7.9E-10 65.6 7.8 89 98-193 10-98 (284)
257 KOG1709 Guanidinoacetate methy 97.9 0.00013 2.8E-09 58.4 10.2 105 41-171 100-204 (271)
258 COG4262 Predicted spermidine s 97.9 0.00044 9.5E-09 59.6 14.0 131 42-194 289-432 (508)
259 PF07091 FmrO: Ribosomal RNA m 97.9 4.6E-05 1E-09 62.6 7.6 73 42-121 105-177 (251)
260 KOG3178 Hydroxyindole-O-methyl 97.9 7.2E-05 1.6E-09 64.2 8.6 99 43-174 178-276 (342)
261 KOG2352 Predicted spermine/spe 97.9 0.00019 4E-09 64.1 11.1 152 5-174 7-162 (482)
262 COG1867 TRM1 N2,N2-dimethylgua 97.9 0.00022 4.8E-09 61.6 11.2 101 43-173 53-154 (380)
263 TIGR00006 S-adenosyl-methyltra 97.8 0.00023 4.9E-09 60.8 10.8 91 26-123 7-100 (305)
264 PRK11760 putative 23S rRNA C24 97.8 0.0012 2.7E-08 56.9 14.6 70 41-124 210-279 (357)
265 COG1568 Predicted methyltransf 97.8 0.00027 5.9E-09 58.6 9.9 124 42-192 152-282 (354)
266 PF03059 NAS: Nicotianamine sy 97.7 0.00068 1.5E-08 57.1 11.8 106 42-172 120-229 (276)
267 PF00145 DNA_methylase: C-5 cy 97.7 0.0014 3.1E-08 56.6 13.5 152 45-215 2-165 (335)
268 COG0500 SmtA SAM-dependent met 97.7 0.0011 2.4E-08 49.8 11.4 105 46-176 52-158 (257)
269 KOG2793 Putative N2,N2-dimethy 97.6 0.0019 4E-08 53.5 13.0 123 43-192 87-219 (248)
270 COG0275 Predicted S-adenosylme 97.6 0.0065 1.4E-07 51.4 15.9 78 41-121 22-102 (314)
271 PF10354 DUF2431: Domain of un 97.6 0.0023 5E-08 50.0 12.1 138 49-197 3-151 (166)
272 PRK01747 mnmC bifunctional tRN 97.5 0.0014 3E-08 62.6 12.1 132 41-195 56-224 (662)
273 KOG1269 SAM-dependent methyltr 97.5 0.00037 8E-09 61.1 7.5 104 41-172 109-214 (364)
274 PRK11524 putative methyltransf 97.4 0.001 2.2E-08 56.7 8.3 58 24-91 194-251 (284)
275 PRK13699 putative methylase; P 97.3 0.0014 3E-08 53.9 8.5 64 19-92 144-207 (227)
276 KOG3987 Uncharacterized conser 97.3 9.2E-05 2E-09 58.8 1.3 95 41-172 111-206 (288)
277 PF01555 N6_N4_Mtase: DNA meth 97.3 0.0011 2.4E-08 54.0 7.8 59 20-88 173-231 (231)
278 KOG0822 Protein kinase inhibit 97.3 0.00064 1.4E-08 61.2 6.3 107 43-171 368-476 (649)
279 KOG1331 Predicted methyltransf 97.3 0.00027 6E-09 58.9 3.8 101 42-175 45-145 (293)
280 COG0270 Dcm Site-specific DNA 97.2 0.0066 1.4E-07 52.8 11.7 153 43-214 3-169 (328)
281 PF04989 CmcI: Cephalosporin h 97.2 0.0041 8.9E-08 50.0 9.2 106 42-171 32-145 (206)
282 PF10237 N6-adenineMlase: Prob 97.1 0.0093 2E-07 46.3 10.7 131 24-198 12-144 (162)
283 KOG2798 Putative trehalase [Ca 97.1 0.0068 1.5E-07 51.4 10.2 142 25-195 128-334 (369)
284 PF07669 Eco57I: Eco57I restri 97.1 0.00071 1.5E-08 48.8 4.0 66 115-189 2-72 (106)
285 COG4301 Uncharacterized conser 97.1 0.029 6.2E-07 46.2 13.3 142 7-171 46-191 (321)
286 PF04672 Methyltransf_19: S-ad 97.1 0.0087 1.9E-07 50.0 10.6 116 42-178 68-195 (267)
287 COG4798 Predicted methyltransf 97.0 0.0099 2.1E-07 47.1 10.1 136 40-195 46-202 (238)
288 PHA01634 hypothetical protein 97.0 0.0036 7.8E-08 46.0 7.2 72 41-122 27-99 (156)
289 PF04445 SAM_MT: Putative SAM- 96.8 0.0039 8.4E-08 51.2 6.6 77 44-127 77-163 (234)
290 PF01795 Methyltransf_5: MraW 96.8 0.0025 5.5E-08 54.5 5.5 88 28-122 9-100 (310)
291 COG5459 Predicted rRNA methyla 96.8 0.0072 1.6E-07 52.1 8.1 117 40-179 111-231 (484)
292 COG1565 Uncharacterized conser 96.8 0.0081 1.8E-07 52.1 8.4 69 25-93 60-132 (370)
293 COG1064 AdhP Zn-dependent alco 96.8 0.0088 1.9E-07 51.8 8.6 96 41-175 165-261 (339)
294 KOG1562 Spermidine synthase [A 96.8 0.0089 1.9E-07 50.3 8.2 112 42-174 121-237 (337)
295 KOG4058 Uncharacterized conser 96.7 0.035 7.6E-07 42.0 10.5 74 26-107 59-134 (199)
296 PRK10458 DNA cytosine methylas 96.7 0.15 3.3E-06 46.5 16.6 164 42-215 87-290 (467)
297 KOG1596 Fibrillarin and relate 96.7 0.065 1.4E-06 44.0 12.6 131 17-174 130-262 (317)
298 PF03141 Methyltransf_29: Puta 96.7 0.0097 2.1E-07 53.7 8.3 130 41-200 364-493 (506)
299 KOG2078 tRNA modification enzy 96.6 0.0018 3.9E-08 56.9 3.6 63 41-109 248-313 (495)
300 TIGR00675 dcm DNA-methyltransf 96.6 0.071 1.5E-06 46.1 13.4 146 46-212 1-160 (315)
301 KOG1253 tRNA methyltransferase 96.6 0.0037 7.9E-08 56.1 5.0 105 41-173 108-216 (525)
302 PF01555 N6_N4_Mtase: DNA meth 96.4 0.0069 1.5E-07 49.2 5.7 72 116-193 1-78 (231)
303 PF00107 ADH_zinc_N: Zinc-bind 96.1 0.023 5.1E-07 41.9 6.4 88 52-176 1-92 (130)
304 KOG2352 Predicted spermine/spe 96.0 0.018 4E-07 51.7 6.5 132 42-189 295-434 (482)
305 KOG1099 SAM-dependent methyltr 95.9 0.061 1.3E-06 43.8 8.5 126 42-189 41-179 (294)
306 KOG1501 Arginine N-methyltrans 95.9 0.017 3.7E-07 51.2 5.7 60 43-107 67-128 (636)
307 PF05430 Methyltransf_30: S-ad 95.9 0.066 1.4E-06 39.7 7.9 82 98-202 34-115 (124)
308 COG1063 Tdh Threonine dehydrog 95.8 0.079 1.7E-06 46.5 9.7 104 42-177 168-273 (350)
309 PF02636 Methyltransf_28: Puta 95.6 0.014 3.1E-07 48.7 4.1 66 27-92 2-72 (252)
310 PF12692 Methyltransf_17: S-ad 95.6 0.042 9E-07 41.6 6.0 115 24-171 14-132 (160)
311 PF07757 AdoMet_MTase: Predict 95.5 0.02 4.4E-07 40.9 3.8 35 41-81 57-91 (112)
312 cd08283 FDH_like_1 Glutathione 95.5 0.11 2.5E-06 46.1 9.5 120 41-173 183-306 (386)
313 PF07279 DUF1442: Protein of u 95.4 0.58 1.3E-05 37.8 12.2 79 42-122 41-122 (218)
314 PTZ00357 methyltransferase; Pr 95.3 0.059 1.3E-06 50.6 7.1 106 44-168 702-830 (1072)
315 PF05711 TylF: Macrocin-O-meth 95.3 0.14 3E-06 42.6 8.6 129 41-194 73-234 (248)
316 PF03492 Methyltransf_7: SAM d 95.1 0.32 6.9E-06 42.5 10.7 135 41-177 15-187 (334)
317 PF02254 TrkA_N: TrkA-N domain 94.9 0.79 1.7E-05 32.9 11.1 108 51-194 4-113 (116)
318 KOG0024 Sorbitol dehydrogenase 94.5 0.3 6.5E-06 42.0 8.6 99 41-174 168-274 (354)
319 cd08254 hydroxyacyl_CoA_DH 6-h 94.4 0.45 9.7E-06 40.9 10.0 96 41-173 164-263 (338)
320 KOG1227 Putative methyltransfe 94.3 0.022 4.8E-07 48.1 1.5 73 42-121 194-268 (351)
321 KOG2360 Proliferation-associat 94.0 0.14 3E-06 44.8 5.9 85 40-127 211-296 (413)
322 COG2961 ComJ Protein involved 93.8 1.1 2.3E-05 37.2 10.1 113 47-188 93-209 (279)
323 PF03686 UPF0146: Uncharacteri 93.7 0.16 3.5E-06 37.4 4.9 67 42-124 13-80 (127)
324 PRK09424 pntA NAD(P) transhydr 93.5 0.96 2.1E-05 41.8 10.7 43 41-88 163-206 (509)
325 KOG2920 Predicted methyltransf 93.5 0.11 2.4E-06 43.7 4.2 69 11-84 81-153 (282)
326 PF02153 PDH: Prephenate dehyd 93.4 2.4 5.1E-05 35.5 12.3 103 62-202 3-108 (258)
327 PF03721 UDPG_MGDP_dh_N: UDP-g 93.4 0.39 8.4E-06 38.2 7.1 116 52-190 7-139 (185)
328 PRK09880 L-idonate 5-dehydroge 93.4 0.97 2.1E-05 39.3 10.3 96 41-174 168-267 (343)
329 PLN02668 indole-3-acetate carb 93.3 1.1 2.3E-05 39.9 10.3 134 43-176 64-240 (386)
330 cd08281 liver_ADH_like1 Zinc-d 93.3 0.85 1.8E-05 40.2 9.9 98 41-173 190-290 (371)
331 COG0863 DNA modification methy 93.2 0.37 7.9E-06 41.0 7.3 102 98-200 18-127 (302)
332 cd08237 ribitol-5-phosphate_DH 93.2 1.2 2.6E-05 38.8 10.6 96 41-174 162-257 (341)
333 PRK15001 SAM-dependent 23S rib 93.1 3.4 7.3E-05 36.8 13.2 120 18-177 25-146 (378)
334 KOG3350 Uncharacterized conser 93.1 2.9 6.3E-05 32.9 11.0 110 41-186 72-184 (217)
335 COG0863 DNA modification methy 93.0 0.68 1.5E-05 39.4 8.6 68 16-93 200-267 (302)
336 COG4627 Uncharacterized protei 92.9 0.029 6.4E-07 42.8 0.0 84 46-176 6-89 (185)
337 COG4889 Predicted helicase [Ge 92.5 0.67 1.4E-05 45.1 8.3 154 17-175 816-1024(1518)
338 PLN03154 putative allyl alcoho 92.3 1 2.2E-05 39.4 8.9 96 41-173 157-258 (348)
339 PF04378 RsmJ: Ribosomal RNA s 91.8 1.5 3.2E-05 36.5 8.7 118 47-192 62-185 (245)
340 cd08293 PTGR2 Prostaglandin re 91.8 4 8.7E-05 35.2 12.0 94 43-173 155-254 (345)
341 COG0677 WecC UDP-N-acetyl-D-ma 91.7 0.82 1.8E-05 40.5 7.3 124 44-188 10-144 (436)
342 PLN02494 adenosylhomocysteinas 91.4 3.9 8.4E-05 37.4 11.6 91 41-174 252-342 (477)
343 cd08239 THR_DH_like L-threonin 91.4 4.1 9E-05 35.1 11.7 98 41-174 162-263 (339)
344 cd05188 MDR Medium chain reduc 91.4 2.7 5.8E-05 34.5 10.1 98 41-174 133-233 (271)
345 PF02086 MethyltransfD12: D12 91.3 0.46 9.9E-06 39.6 5.4 54 26-88 7-60 (260)
346 PRK08643 acetoin reductase; Va 91.2 6.7 0.00015 32.2 12.4 80 44-126 3-90 (256)
347 TIGR03451 mycoS_dep_FDH mycoth 91.2 2.3 4.9E-05 37.3 9.9 98 41-174 175-277 (358)
348 PRK06113 7-alpha-hydroxysteroi 91.1 7.1 0.00015 32.1 12.4 81 42-125 10-98 (255)
349 TIGR03366 HpnZ_proposed putati 91.0 2.8 6.1E-05 35.3 10.0 97 41-173 119-218 (280)
350 KOG2539 Mitochondrial/chloropl 90.9 0.91 2E-05 40.9 7.0 142 25-186 182-328 (491)
351 TIGR01202 bchC 2-desacetyl-2-h 90.7 1.8 3.8E-05 37.1 8.6 88 42-174 144-232 (308)
352 PRK07454 short chain dehydroge 90.5 7.6 0.00016 31.5 12.0 82 42-126 5-94 (241)
353 PTZ00075 Adenosylhomocysteinas 90.5 4.9 0.00011 36.8 11.4 104 41-190 252-356 (476)
354 PF05050 Methyltransf_21: Meth 90.4 1 2.2E-05 34.3 6.3 45 48-94 1-49 (167)
355 PRK05786 fabG 3-ketoacyl-(acyl 90.3 7.3 0.00016 31.5 11.7 125 42-174 4-136 (238)
356 PRK08415 enoyl-(acyl carrier p 90.3 7.6 0.00017 32.6 12.0 82 42-126 4-94 (274)
357 PLN02740 Alcohol dehydrogenase 90.2 1.7 3.7E-05 38.5 8.3 97 41-173 197-300 (381)
358 PRK06128 oxidoreductase; Provi 90.2 3.5 7.5E-05 35.1 10.0 126 42-173 54-191 (300)
359 cd08230 glucose_DH Glucose deh 90.0 3.7 7.9E-05 35.8 10.2 96 41-174 171-270 (355)
360 cd08294 leukotriene_B4_DH_like 89.9 4.2 9E-05 34.8 10.3 95 41-173 142-241 (329)
361 TIGR02825 B4_12hDH leukotriene 89.9 5 0.00011 34.4 10.8 95 41-173 137-237 (325)
362 PRK08265 short chain dehydroge 89.8 6.9 0.00015 32.4 11.3 79 42-126 5-91 (261)
363 PRK05476 S-adenosyl-L-homocyst 89.6 10 0.00023 34.2 12.7 90 41-174 210-300 (425)
364 PF05063 MT-A70: MT-A70 ; Int 89.6 2.1 4.5E-05 33.6 7.5 71 116-194 1-73 (176)
365 KOG4174 Uncharacterized conser 89.5 3.2 6.9E-05 34.5 8.5 143 42-193 56-212 (282)
366 COG0287 TyrA Prephenate dehydr 89.3 5.2 0.00011 34.0 10.1 111 44-192 4-114 (279)
367 PLN02827 Alcohol dehydrogenase 89.3 2.4 5.3E-05 37.5 8.5 97 41-173 192-295 (378)
368 cd08238 sorbose_phosphate_red 89.2 5.3 0.00011 35.8 10.7 47 41-89 174-222 (410)
369 PRK05867 short chain dehydroge 89.1 9.5 0.00021 31.3 11.5 82 42-126 8-97 (253)
370 PF13561 adh_short_C2: Enoyl-( 89.1 1.8 3.8E-05 35.5 7.1 118 50-174 1-134 (241)
371 cd08295 double_bond_reductase_ 89.0 3.6 7.7E-05 35.6 9.3 96 41-173 150-251 (338)
372 TIGR03201 dearomat_had 6-hydro 88.8 2.6 5.6E-05 36.7 8.3 44 41-88 165-208 (349)
373 PLN02353 probable UDP-glucose 88.6 4.6 0.0001 37.1 9.9 125 45-188 3-143 (473)
374 PF03269 DUF268: Caenorhabditi 88.6 5.3 0.00011 31.0 8.6 135 43-199 2-146 (177)
375 PRK06035 3-hydroxyacyl-CoA deh 88.6 8.5 0.00018 32.7 11.1 44 44-91 4-47 (291)
376 PRK07806 short chain dehydroge 88.5 12 0.00026 30.4 12.0 121 42-173 5-134 (248)
377 TIGR00853 pts-lac PTS system, 88.4 4.5 9.7E-05 28.3 7.7 56 44-124 4-59 (95)
378 PRK07985 oxidoreductase; Provi 88.4 5.2 0.00011 34.0 9.8 81 42-125 48-138 (294)
379 PRK06701 short chain dehydroge 88.2 7.5 0.00016 32.9 10.6 126 42-173 45-181 (290)
380 cd00401 AdoHcyase S-adenosyl-L 88.2 5.1 0.00011 36.1 9.8 90 41-174 200-290 (413)
381 PRK07533 enoyl-(acyl carrier p 88.1 14 0.0003 30.6 11.9 83 41-126 8-99 (258)
382 PRK09260 3-hydroxybutyryl-CoA 88.0 8 0.00017 32.8 10.6 110 45-186 3-129 (288)
383 PRK07102 short chain dehydroge 88.0 13 0.00028 30.3 11.6 79 44-125 2-86 (243)
384 KOG2651 rRNA adenine N-6-methy 87.9 1.7 3.6E-05 38.3 6.2 42 42-88 153-194 (476)
385 TIGR02822 adh_fam_2 zinc-bindi 87.9 7.3 0.00016 33.7 10.4 92 41-174 164-255 (329)
386 cd05278 FDH_like Formaldehyde 87.7 6.8 0.00015 33.7 10.2 96 41-173 166-267 (347)
387 PRK05854 short chain dehydroge 87.7 17 0.00036 31.2 12.5 82 42-126 13-104 (313)
388 PRK08594 enoyl-(acyl carrier p 87.5 15 0.00032 30.4 11.8 81 42-126 6-98 (257)
389 PLN02253 xanthoxin dehydrogena 87.5 10 0.00023 31.6 11.0 80 42-125 17-104 (280)
390 KOG0023 Alcohol dehydrogenase, 87.5 1.4 3E-05 38.0 5.4 99 41-176 180-282 (360)
391 TIGR00027 mthyl_TIGR00027 meth 87.5 14 0.0003 31.0 11.5 108 42-174 81-198 (260)
392 PRK06603 enoyl-(acyl carrier p 87.5 12 0.00026 31.1 11.2 82 42-126 7-97 (260)
393 COG0604 Qor NADPH:quinone redu 87.4 3.8 8.3E-05 35.6 8.4 99 41-176 141-244 (326)
394 PF06859 Bin3: Bicoid-interact 87.2 0.29 6.3E-06 35.2 1.0 21 152-172 23-43 (110)
395 TIGR02818 adh_III_F_hyde S-(hy 87.2 4.1 8.9E-05 35.8 8.6 99 41-174 184-288 (368)
396 PRK10669 putative cation:proto 87.2 11 0.00024 35.3 11.9 63 51-121 423-487 (558)
397 COG4121 Uncharacterized conser 87.1 9.7 0.00021 31.8 10.1 133 42-196 58-227 (252)
398 PRK03659 glutathione-regulated 87.1 8.1 0.00018 36.7 10.9 64 51-122 406-471 (601)
399 COG1255 Uncharacterized protei 87.0 5.8 0.00013 28.8 7.5 64 42-121 13-76 (129)
400 PRK08267 short chain dehydroge 86.6 12 0.00027 30.7 10.8 78 44-126 2-88 (260)
401 PRK09072 short chain dehydroge 86.5 16 0.00034 30.2 11.4 81 42-126 4-91 (263)
402 cd08232 idonate-5-DH L-idonate 86.4 9.6 0.00021 32.8 10.4 93 42-173 165-262 (339)
403 PRK09590 celB cellobiose phosp 86.2 6.5 0.00014 28.1 7.6 39 85-123 20-58 (104)
404 PRK06505 enoyl-(acyl carrier p 86.1 17 0.00038 30.3 11.5 81 42-125 6-95 (271)
405 PRK07066 3-hydroxybutyryl-CoA 86.1 20 0.00043 31.2 11.9 139 44-217 8-160 (321)
406 PRK07819 3-hydroxybutyryl-CoA 86.1 20 0.00043 30.5 11.8 96 44-171 6-119 (286)
407 PRK06079 enoyl-(acyl carrier p 85.9 18 0.00039 29.7 11.6 80 42-126 6-94 (252)
408 COG1062 AdhC Zn-dependent alco 85.8 5.9 0.00013 34.5 8.3 99 41-175 184-287 (366)
409 PRK10309 galactitol-1-phosphat 85.7 11 0.00024 32.6 10.5 97 41-173 159-260 (347)
410 PRK12481 2-deoxy-D-gluconate 3 85.5 16 0.00036 29.9 11.0 80 42-126 7-94 (251)
411 PF03446 NAD_binding_2: NAD bi 85.4 8.5 0.00019 29.6 8.6 103 52-192 8-114 (163)
412 PRK11064 wecC UDP-N-acetyl-D-m 85.3 8.8 0.00019 34.6 9.8 122 44-189 4-136 (415)
413 PRK06940 short chain dehydroge 85.2 17 0.00036 30.5 11.0 78 44-126 3-87 (275)
414 cd08261 Zn_ADH7 Alcohol dehydr 85.2 10 0.00022 32.6 9.9 97 41-173 158-258 (337)
415 cd08300 alcohol_DH_class_III c 85.1 5.9 0.00013 34.8 8.5 98 41-174 185-289 (368)
416 COG1748 LYS9 Saccharopine dehy 85.0 6 0.00013 35.3 8.3 76 44-126 2-79 (389)
417 PRK08159 enoyl-(acyl carrier p 85.0 17 0.00037 30.4 11.0 82 42-126 9-99 (272)
418 PRK09291 short chain dehydroge 85.0 9.2 0.0002 31.3 9.2 79 44-125 3-83 (257)
419 PRK07502 cyclohexadienyl dehyd 84.4 12 0.00026 32.1 9.9 92 44-171 7-98 (307)
420 PF02558 ApbA: Ketopantoate re 84.3 1.8 3.9E-05 32.7 4.3 105 51-186 4-114 (151)
421 PRK07889 enoyl-(acyl carrier p 84.3 19 0.00041 29.8 10.8 80 42-126 6-96 (256)
422 PRK05808 3-hydroxybutyryl-CoA 84.3 9.4 0.0002 32.2 9.1 109 45-186 5-130 (282)
423 cd08233 butanediol_DH_like (2R 84.1 13 0.00029 32.1 10.3 99 41-174 171-273 (351)
424 cd08255 2-desacetyl-2-hydroxye 84.1 11 0.00024 31.2 9.4 94 41-174 96-191 (277)
425 cd05285 sorbitol_DH Sorbitol d 84.0 13 0.00028 32.2 10.0 96 41-173 161-265 (343)
426 cd08234 threonine_DH_like L-th 83.8 11 0.00025 32.1 9.6 96 41-173 158-257 (334)
427 PRK06196 oxidoreductase; Provi 83.7 18 0.00039 30.9 10.8 78 42-126 25-110 (315)
428 cd08285 NADP_ADH NADP(H)-depen 83.6 15 0.00033 31.8 10.4 97 41-173 165-266 (351)
429 PRK12826 3-ketoacyl-(acyl-carr 83.3 12 0.00027 30.3 9.3 83 42-127 5-95 (251)
430 PRK07774 short chain dehydroge 83.2 23 0.0005 28.7 11.9 82 42-126 5-94 (250)
431 PLN02545 3-hydroxybutyryl-CoA 83.1 22 0.00047 30.2 10.9 110 44-186 5-131 (295)
432 cd08236 sugar_DH NAD(P)-depend 83.0 8.1 0.00018 33.3 8.4 96 41-173 158-258 (343)
433 TIGR01963 PHB_DH 3-hydroxybuty 83.0 12 0.00025 30.6 9.0 79 44-125 2-88 (255)
434 cd08301 alcohol_DH_plants Plan 82.9 8.3 0.00018 33.8 8.5 98 41-174 186-290 (369)
435 PRK09242 tropinone reductase; 82.9 25 0.00053 28.8 11.9 81 42-125 8-98 (257)
436 PRK07370 enoyl-(acyl carrier p 82.7 17 0.00038 30.0 10.0 82 42-126 5-98 (258)
437 PRK08324 short chain dehydroge 82.5 18 0.00039 34.9 11.1 81 42-126 421-509 (681)
438 PRK08945 putative oxoacyl-(acy 82.5 13 0.00028 30.4 9.0 80 42-124 11-101 (247)
439 COG1743 Adenine-specific DNA m 82.5 1.5 3.2E-05 42.1 3.6 44 42-91 90-133 (875)
440 PRK05866 short chain dehydroge 82.4 3.6 7.9E-05 35.0 5.9 118 1-125 1-127 (293)
441 PRK05872 short chain dehydroge 82.4 27 0.00058 29.6 11.2 81 42-126 8-96 (296)
442 cd08277 liver_alcohol_DH_like 82.2 10 0.00022 33.3 8.8 98 41-174 183-287 (365)
443 PRK06197 short chain dehydroge 82.1 30 0.00066 29.3 13.1 83 41-126 14-106 (306)
444 TIGR02415 23BDH acetoin reduct 82.1 26 0.00056 28.5 12.1 79 45-126 2-88 (254)
445 cd08245 CAD Cinnamyl alcohol d 82.0 20 0.00043 30.6 10.4 95 41-173 161-256 (330)
446 PRK06057 short chain dehydroge 82.0 19 0.00042 29.5 10.0 77 42-126 6-90 (255)
447 cd08291 ETR_like_1 2-enoyl thi 81.8 17 0.00038 31.0 10.0 98 42-174 142-243 (324)
448 PRK08628 short chain dehydroge 81.5 26 0.00057 28.7 10.6 80 42-125 6-93 (258)
449 PRK15057 UDP-glucose 6-dehydro 81.5 39 0.00084 30.2 12.8 34 52-88 7-40 (388)
450 PRK08703 short chain dehydroge 81.5 11 0.00023 30.6 8.2 80 42-124 5-96 (239)
451 PRK12743 oxidoreductase; Provi 81.5 28 0.00061 28.5 12.2 81 43-126 2-91 (256)
452 PRK08213 gluconate 5-dehydroge 81.4 9.5 0.00021 31.4 7.9 81 42-125 11-99 (259)
453 PRK07109 short chain dehydroge 81.3 13 0.00027 32.4 8.9 81 42-125 7-95 (334)
454 COG1743 Adenine-specific DNA m 81.3 7 0.00015 37.7 7.5 48 151-198 566-616 (875)
455 KOG3924 Putative protein methy 81.1 8.2 0.00018 34.3 7.4 94 25-122 175-279 (419)
456 PRK08306 dipicolinate synthase 81.0 20 0.00042 30.7 9.8 41 42-86 151-191 (296)
457 PRK05717 oxidoreductase; Valid 80.9 29 0.00064 28.4 11.1 80 41-126 8-95 (255)
458 PRK07523 gluconate 5-dehydroge 80.6 9.7 0.00021 31.2 7.7 82 42-126 9-98 (255)
459 PRK06139 short chain dehydroge 80.5 13 0.00028 32.3 8.7 81 42-125 6-94 (330)
460 COG5379 BtaA S-adenosylmethion 80.4 7.2 0.00016 33.3 6.6 45 41-91 62-106 (414)
461 PF08468 MTS_N: Methyltransfer 80.3 4.5 9.8E-05 31.1 5.1 55 114-190 68-122 (155)
462 PF06460 NSP13: Coronavirus NS 80.1 35 0.00076 28.7 12.5 144 41-213 60-209 (299)
463 PRK06949 short chain dehydroge 80.0 13 0.00028 30.4 8.3 82 41-125 7-96 (258)
464 PF02826 2-Hacid_dh_C: D-isome 79.9 8.4 0.00018 30.2 6.7 109 41-188 34-143 (178)
465 PF00106 adh_short: short chai 79.7 24 0.00051 26.6 9.9 81 45-127 2-92 (167)
466 cd08278 benzyl_alcohol_DH Benz 79.5 22 0.00047 31.2 9.9 97 41-173 185-285 (365)
467 KOG2782 Putative SAM dependent 79.5 3.4 7.5E-05 33.6 4.3 100 17-123 21-126 (303)
468 COG0338 Dam Site-specific DNA 79.3 25 0.00055 29.8 9.6 82 97-188 157-240 (274)
469 PRK07984 enoyl-(acyl carrier p 79.3 35 0.00077 28.3 11.9 82 42-126 5-95 (262)
470 PRK08589 short chain dehydroge 79.3 35 0.00077 28.3 12.0 81 42-126 5-93 (272)
471 PRK06172 short chain dehydroge 79.2 12 0.00027 30.6 7.9 82 42-126 6-95 (253)
472 PRK06124 gluconate 5-dehydroge 79.2 12 0.00027 30.6 7.9 81 42-125 10-98 (256)
473 PRK06522 2-dehydropantoate 2-r 79.0 24 0.00053 29.8 9.9 108 45-186 2-113 (304)
474 cd08240 6_hydroxyhexanoate_dh_ 78.9 27 0.00058 30.2 10.3 96 42-173 175-274 (350)
475 cd05281 TDH Threonine dehydrog 78.5 30 0.00064 29.8 10.4 97 41-173 162-262 (341)
476 PRK08278 short chain dehydroge 78.4 37 0.0008 28.3 10.6 82 42-126 5-101 (273)
477 PLN02780 ketoreductase/ oxidor 78.3 43 0.00094 28.8 12.2 81 42-125 52-142 (320)
478 PRK03562 glutathione-regulated 78.3 17 0.00037 34.7 9.3 68 44-121 401-470 (621)
479 PF11899 DUF3419: Protein of u 77.9 4 8.6E-05 36.3 4.7 71 78-171 262-332 (380)
480 PRK07814 short chain dehydroge 77.9 14 0.00031 30.5 8.0 80 42-124 9-96 (263)
481 cd05292 LDH_2 A subgroup of L- 77.7 30 0.00066 29.7 10.0 112 45-173 2-116 (308)
482 TIGR00692 tdh L-threonine 3-de 77.6 31 0.00068 29.6 10.3 98 41-173 160-261 (340)
483 COG2130 Putative NADP-dependen 77.6 33 0.00072 29.6 9.8 97 41-173 149-249 (340)
484 PRK07530 3-hydroxybutyryl-CoA 77.2 44 0.00095 28.3 12.3 98 44-173 5-119 (292)
485 PRK09489 rsmC 16S ribosomal RN 77.1 11 0.00023 33.1 7.1 55 114-190 75-129 (342)
486 KOG0022 Alcohol dehydrogenase, 77.0 17 0.00037 31.5 7.9 103 42-174 192-295 (375)
487 PRK08177 short chain dehydroge 76.8 17 0.00036 29.2 7.9 75 44-126 2-82 (225)
488 PRK08340 glucose-1-dehydrogena 76.7 41 0.00088 27.6 12.5 77 45-125 2-86 (259)
489 COG3510 CmcI Cephalosporin hyd 76.7 31 0.00068 27.7 8.8 109 41-173 68-180 (237)
490 PRK07904 short chain dehydroge 76.7 24 0.00052 29.1 9.0 84 41-126 6-98 (253)
491 TIGR00936 ahcY adenosylhomocys 76.5 58 0.0013 29.3 13.7 91 41-175 193-284 (406)
492 TIGR01832 kduD 2-deoxy-D-gluco 76.5 39 0.00085 27.4 11.5 80 42-126 4-91 (248)
493 KOG1098 Putative SAM-dependent 76.4 2.8 6.1E-05 39.3 3.4 107 41-170 43-155 (780)
494 PRK07576 short chain dehydroge 75.9 17 0.00037 30.1 7.9 80 42-124 8-95 (264)
495 PRK10904 DNA adenine methylase 75.9 22 0.00047 30.0 8.5 81 98-188 159-239 (271)
496 PF03435 Saccharop_dh: Sacchar 75.7 15 0.00032 32.6 7.8 75 46-125 1-78 (386)
497 TIGR00006 S-adenosyl-methyltra 75.6 4.8 0.0001 34.7 4.4 39 149-188 216-255 (305)
498 PRK07453 protochlorophyllide o 75.6 16 0.00034 31.4 7.8 81 42-125 5-93 (322)
499 PRK12746 short chain dehydroge 75.5 42 0.00092 27.3 11.3 81 42-125 5-100 (254)
500 PRK12480 D-lactate dehydrogena 75.4 42 0.00091 29.2 10.3 106 42-189 145-251 (330)
No 1
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.7e-27 Score=198.83 Aligned_cols=188 Identities=27% Similarity=0.383 Sum_probs=154.3
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+++|.||++|+.+++.++..... ... +|||+|||||++++.++.. .|.+.|+|+|+|+.+++.|++|
T Consensus 82 ~~~v~~~vliPr~dTe~Lve~~l~~~~~---~~~-~ilDlGTGSG~iai~la~~----~~~~~V~a~Dis~~Al~~A~~N 153 (280)
T COG2890 82 RFKVDEGVLIPRPDTELLVEAALALLLQ---LDK-RILDLGTGSGAIAIALAKE----GPDAEVIAVDISPDALALAREN 153 (280)
T ss_pred eeeeCCCceecCCchHHHHHHHHHhhhh---cCC-cEEEecCChHHHHHHHHhh----CcCCeEEEEECCHHHHHHHHHH
Confidence 4789999999999999999998744432 122 8999999999999988887 7788999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCC----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..+++.. .++.+|+++... ++||+|++||||.+... ++....++..++++|.+|...+..++..+.+.|+
T Consensus 154 a~~~~l~~~~~~~~dlf~~~~----~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~ 229 (280)
T COG2890 154 AERNGLVRVLVVQSDLFEPLR----GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK 229 (280)
T ss_pred HHHcCCccEEEEeeecccccC----CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC
Confidence 99999743 555557766543 48999999999999872 2345678888999888999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcC-CcEEEEEecCCCCccEEEEE
Q 025211 165 KRGWLYLVTLTANDPSQICLQMMEKG-YAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~l~~ 210 (256)
|||.+++ ..+.++.+.+.+.+.+.+ |............+++....
T Consensus 230 ~~g~l~l-e~g~~q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 230 PGGVLIL-EIGLTQGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred CCcEEEE-EECCCcHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 9999888 567788899999999999 55566666666665554443
No 2
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.7e-27 Score=177.62 Aligned_cols=194 Identities=52% Similarity=0.891 Sum_probs=179.8
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025211 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
..++|.|..|++.|.|.+.....++.+..+..++|+|||+|.++-.+++.+. |++...++|+||.+.+...+.+..|
T Consensus 15 f~dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~---~~~~~latDiNp~A~~~Tl~TA~~n 91 (209)
T KOG3191|consen 15 FSDVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIG---PQALYLATDINPEALEATLETARCN 91 (209)
T ss_pred hhhccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcC---CCceEEEecCCHHHHHHHHHHHHhc
Confidence 4499999999999999998888777666789999999999999988888764 7889999999999999999999999
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...++++.|+.+.+.. ++.|+++.||||.+.+..+....+...+|.||.+|+.+.+.++.++-.+|.|.|.++++.
T Consensus 92 ~~~~~~V~tdl~~~l~~---~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~ 168 (209)
T KOG3191|consen 92 RVHIDVVRTDLLSGLRN---ESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVA 168 (209)
T ss_pred CCccceeehhHHhhhcc---CCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeee
Confidence 98889999999988765 899999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025211 174 LTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 174 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
...+...++.+.++..||.....+.+....++..++++.+
T Consensus 169 ~~~N~p~ei~k~l~~~g~~~~~~~~Rk~~~E~l~ilkf~r 208 (209)
T KOG3191|consen 169 LRANKPKEILKILEKKGYGVRIAMQRKAGGETLSILKFTR 208 (209)
T ss_pred hhhcCHHHHHHHHhhcccceeEEEEEecCCceEEEEEEEe
Confidence 9888899999999999999999999999999999998876
No 3
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.95 E-value=2.9e-26 Score=199.90 Aligned_cols=189 Identities=23% Similarity=0.280 Sum_probs=160.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.|++|.||++++.+++.+++.+. ++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 225 f~V~p~vLIPRpeTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~----~p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 225 FAVNPNVLIPRPETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALE----RPDAFVRASDISPPALETARKNA 295 (423)
T ss_pred EEeCCCccCCCccHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHH
Confidence 67899999999999999999988753 4579999999999999888776 67889999999999999999999
Q ss_pred HHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025211 91 EAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 91 ~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
..++...+++++|+.+...+ ..++||+|++||||....+. +....++..++.++.+|...+..++..+.+.|+||
T Consensus 296 ~~~g~rV~fi~gDl~e~~l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkpg 374 (423)
T PRK14966 296 ADLGARVEFAHGSWFDTDMP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEG 374 (423)
T ss_pred HHcCCcEEEEEcchhccccc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCC
Confidence 98887668999998764221 13579999999999876542 22356888899999999999999999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEE
Q 025211 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 210 (256)
|.+++ ..+..+.+.+.+.+.+.||....+.....+.+++.+..
T Consensus 375 G~lil-EiG~~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 375 GFLLL-EHGFDQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred cEEEE-EECccHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 99887 45677888999999999998888888888888876543
No 4
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.95 E-value=4.8e-26 Score=206.66 Aligned_cols=195 Identities=23% Similarity=0.296 Sum_probs=163.0
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhccc------------------c---cCCCCEEEEecccccHHHHHHHHHhcccC
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINL------------------V---EHHPVLCMEVGCGSGYVITSLALMLGQEV 68 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~------------------~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~ 68 (256)
.|.+.|+|++||++|+.+++++++.+... . ..++.+|||+|||+|++++.++.. .
T Consensus 85 ~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~----~ 160 (506)
T PRK01544 85 EFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE----L 160 (506)
T ss_pred EEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH----C
Confidence 37799999999999999999998765310 0 113578999999999999888876 5
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhh
Q 025211 69 PGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASA 141 (256)
Q Consensus 69 ~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~ 141 (256)
|+++|+|+|+|+.+++.|++|+..+++.. .++++|+.+... .++||+|++||||...... ++...++..+
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~---~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~A 237 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE---KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIA 237 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc---CCCccEEEECCCCCCchhhhhcCchhhccCcHHH
Confidence 77899999999999999999999888743 788999866432 3589999999999987653 3456788999
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025211 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
+.++.+|+..+..++..+.++|+|||.+++ ..+..+.+.+.+.+.+.||....+.....+.+++.++...
T Consensus 238 L~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig~~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~~~ 307 (506)
T PRK01544 238 LFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIGFKQEEAVTQIFLDHGYNIESVYKDLQGHSRVILISPI 307 (506)
T ss_pred hcCCccHHHHHHHHHHHHHHhccCCCEEEE-EECCchHHHHHHHHHhcCCCceEEEecCCCCceEEEeccc
Confidence 999999999999999999999999999988 4667788899999999999888888888888887766544
No 5
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.95 E-value=3.5e-26 Score=186.46 Aligned_cols=194 Identities=16% Similarity=0.178 Sum_probs=155.8
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+--.+++|.++.|+.+|+.++... ..++|||+|||+|.+++.+++. .+++.|+|||+++++++.|++|+
T Consensus 20 I~q~~~~~~~~~DaiLL~~~~~~~-------~~~~IlDlGaG~G~l~L~la~r----~~~a~I~~VEiq~~~a~~A~~nv 88 (248)
T COG4123 20 IIQDRCGFRYGTDAILLAAFAPVP-------KKGRILDLGAGNGALGLLLAQR----TEKAKIVGVEIQEEAAEMAQRNV 88 (248)
T ss_pred EEeCCCccccccHHHHHHhhcccc-------cCCeEEEecCCcCHHHHHHhcc----CCCCcEEEEEeCHHHHHHHHHHH
Confidence 334677999999999988876554 3799999999999987776665 66789999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025211 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
+.|++.. ++++.|+.+........+||+|+|||||+.........+....+.+.... .++++++.+..+|||||.
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~---~le~~i~~a~~~lk~~G~ 165 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITL---DLEDLIRAAAKLLKPGGR 165 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcC---CHHHHHHHHHHHccCCCE
Confidence 9999876 99999999988766566899999999999887762222222222222111 278999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcE---EEEEecCCCCccEEEEEEEecCcccc
Q 025211 169 LYLVTLTANDPSQICLQMMEKGYAA---RIVVQRSTEEENLHIIKFWRDFDIQM 219 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~ 219 (256)
++++.+..+ ..++...+.+++|.. ..++++.....+..+++++++++...
T Consensus 166 l~~V~r~er-l~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~~~~~l 218 (248)
T COG4123 166 LAFVHRPER-LAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKGGKSGL 218 (248)
T ss_pred EEEEecHHH-HHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecCCCCCc
Confidence 999887554 678899999988875 45778889999999999999988544
No 6
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.94 E-value=8.4e-25 Score=185.85 Aligned_cols=190 Identities=22% Similarity=0.327 Sum_probs=156.3
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.|.+.++++.||++++.+++.+++.+.. ..+..+|||+|||+|.+++.++.. .++++|+|+|+|+++++.|++|
T Consensus 84 ~f~v~~~vliPr~ete~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~l~la~~----~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 84 EFFVNEHVLIPRPETEELVEKALASLIS--QNPILHILDLGTGSGCIALALAYE----FPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred EEEECCCCcCCCCccHHHHHHHHHHhhh--cCCCCEEEEEeccHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 4778999999999999999998876531 123379999999999999988887 6678999999999999999999
Q ss_pred HHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025211 90 LEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++. .+++++|+.+... ..+||+|++||||...... ++...++..++.+|.+|...+..++..+.++|
T Consensus 158 ~~~~~~~~~v~~~~~d~~~~~~---~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 158 AEKNQLEHRVEFIQSNLFEPLA---GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred HHHcCCCCcEEEEECchhccCc---CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 9998875 4899999876532 2479999999999977542 34457888899999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHH-HcCCcEEEEEecCCCCccEEEE
Q 025211 164 SKRGWLYLVTLTANDPSQICLQMM-EKGYAARIVVQRSTEEENLHII 209 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~l~ 209 (256)
+|||++++. .+..+...+.+++. ..+|....+.....+.+++.+.
T Consensus 235 ~~gG~l~~e-~g~~q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 235 KPNGFLVCE-IGNWQQKSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred cCCCEEEEE-ECccHHHHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 999999884 45666778888887 4688777777777777776653
No 7
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.94 E-value=8.8e-25 Score=182.16 Aligned_cols=179 Identities=27% Similarity=0.405 Sum_probs=147.1
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|.|+.+++.+++.++..+... ..+.+|||+|||+|.+++.++.. .++.+++|+|+|+.+++.|++|
T Consensus 56 ~~~v~~~vf~pr~~Te~Lv~~~l~~~~~~--~~~~~vLDlg~GsG~i~l~la~~----~~~~~v~~vDis~~al~~A~~N 129 (251)
T TIGR03704 56 RIAVDPGVFVPRRRTEFLVDEAAALARPR--SGTLVVVDLCCGSGAVGAALAAA----LDGIELHAADIDPAAVRCARRN 129 (251)
T ss_pred EEEECCCCcCCCccHHHHHHHHHHhhccc--CCCCEEEEecCchHHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHH
Confidence 36788999999999999999988765321 23468999999999999888876 5667999999999999999999
Q ss_pred HHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 90 LEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 90 ~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
+..++. +++++|+.+.......++||+|++||||..... +++...++..++.+|.++.+.+..++..+.++|+
T Consensus 130 ~~~~~~--~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~ 207 (251)
T TIGR03704 130 LADAGG--TVHEGDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA 207 (251)
T ss_pred HHHcCC--EEEEeechhhcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 988763 788899877543322467999999999987543 3445677788899999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025211 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|||++++... ..+..++...+.+.||......
T Consensus 208 ~gG~l~l~~~-~~~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 208 PGGHLLVETS-ERQAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred CCCEEEEEEC-cchHHHHHHHHHHCCCCceeeE
Confidence 9999999655 5567889999999999866554
No 8
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.93 E-value=7.3e-24 Score=168.46 Aligned_cols=178 Identities=34% Similarity=0.519 Sum_probs=146.0
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025211 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
+|.|+.++.++.+.+... ++.+|||+|||+|.+++.++.. ++ +++++|+++.+++.+++|+..++..
T Consensus 1 ~~~~~~d~~~l~~~l~~~-------~~~~vLdlG~G~G~~~~~l~~~----~~--~v~~vD~s~~~~~~a~~~~~~~~~~ 67 (179)
T TIGR00537 1 VYEPAEDSLLLEANLREL-------KPDDVLEIGAGTGLVAIRLKGK----GK--CILTTDINPFAVKELRENAKLNNVG 67 (179)
T ss_pred CCCCCccHHHHHHHHHhc-------CCCeEEEeCCChhHHHHHHHhc----CC--EEEEEECCHHHHHHHHHHHHHcCCc
Confidence 589999997777665332 5678999999999998877765 33 8999999999999999999988876
Q ss_pred ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 97 ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+++.+|+.+.. .++||+|++||||++.+.......+...++.++..+...+..++.++.++|+|||+++++....
T Consensus 68 ~~~~~~d~~~~~----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 68 LDVVMTDLFKGV----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred eEEEEccccccc----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 688889976642 3589999999999887665433344455666676677778999999999999999999988877
Q ss_pred CCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEE
Q 025211 177 NDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKF 211 (256)
Q Consensus 177 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~ 211 (256)
....++...+.+.||..+.+.......+..+.+++
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~~ 178 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAIKA 178 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEEEe
Confidence 77889999999999999999888888888777764
No 9
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.92 E-value=5.8e-24 Score=172.24 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=152.4
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
....|+|++||++|+.+++++.+.+....-.++..|||+|||+|++++.++..| |+++|+|+|.|+.++..|.+|+
T Consensus 117 l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L----~~~~v~AiD~S~~Ai~La~eN~ 192 (328)
T KOG2904|consen 117 LVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGL----PQCTVTAIDVSKAAIKLAKENA 192 (328)
T ss_pred EEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcC----CCceEEEEeccHHHHHHHHHHH
Confidence 456799999999999999999998864322356689999999999998888774 5789999999999999999999
Q ss_pred HHcCCcc--eEEEc----chhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHH
Q 025211 91 EAHNVHA--DLINT----DIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 91 ~~~~~~~--~~~~~----d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++++.. .+++- |..... +...+++|++++||||....+ ++++..++..++.||..|.+++-.+..-+
T Consensus 193 qr~~l~g~i~v~~~~me~d~~~~~-~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a 271 (328)
T KOG2904|consen 193 QRLKLSGRIEVIHNIMESDASDEH-PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLA 271 (328)
T ss_pred HHHhhcCceEEEeccccccccccc-ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhh
Confidence 9998876 44433 333322 134589999999999998776 56788899999999999999999999999
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcC----CcEEEEEecCCCCccEEEEE
Q 025211 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKG----YAARIVVQRSTEEENLHIIK 210 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~l~~ 210 (256)
.++|+|||.+.+..........+.+.+.... +....++....+.++++.+.
T Consensus 272 ~R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~d~~~~~~v~~Df~~~~Rfv~i~ 326 (328)
T KOG2904|consen 272 TRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFAGRPRFVIIH 326 (328)
T ss_pred HhhcccCCeEEEEecccccCcHHHHHHHHhchhhccchhheeecccCCcceEEEE
Confidence 9999999999997765555555555544332 23344566666666665543
No 10
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.92 E-value=3.6e-23 Score=175.45 Aligned_cols=172 Identities=23% Similarity=0.301 Sum_probs=140.7
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.||++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .++++++|+|+|+.+++.|++|+
T Consensus 92 f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~~~la~~----~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 92 FYVDERVLIPRSPIAELIEDGFAPWLE--PEPVKRILDLCTGSGCIAIACAYA----FPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred EEECCCCccCCCchHHHHHHHHHHHhc--cCCCCEEEEEeCchhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHH
Confidence 678999999999998888887653211 134679999999999999988887 67789999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
..+++. ..++++|+.+..+ .++||+|++||||....... ....++..++.++..|...+..++..+.++|+
T Consensus 166 ~~~~~~~~i~~~~~D~~~~~~---~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~ 242 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFAALP---GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN 242 (284)
T ss_pred HHcCCCCcEEEEECchhhccC---CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC
Confidence 999875 3889999876532 35799999999998765421 12467788889999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025211 165 KRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
|||++++... .. ...+.+.+.+.+|.+
T Consensus 243 ~gG~l~~e~g-~~-~~~v~~~~~~~~~~~ 269 (284)
T TIGR03533 243 ENGVLVVEVG-NS-MEALEEAYPDVPFTW 269 (284)
T ss_pred CCCEEEEEEC-cC-HHHHHHHHHhCCCce
Confidence 9999998543 43 468888888888765
No 11
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.91 E-value=7.4e-23 Score=173.35 Aligned_cols=188 Identities=25% Similarity=0.405 Sum_probs=151.9
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+...+++++|+++++.++++++.... ..++.+|||+|||+|.+++.++.. .+.+.++|+|+++.+++.+++|
T Consensus 79 ~~~~~~~~lipr~~te~l~~~~~~~~~---~~~~~~vLDiG~GsG~~~~~la~~----~~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 79 DFKVSPGVLIPRPETEELVEWALEALL---LKEPLRVLDLGTGSGAIALALAKE----RPDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred EEEECCCceeCCCCcHHHHHHHHHhcc---ccCCCEEEEEcCcHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 366788999999999999999885542 246789999999999999988887 5678999999999999999999
Q ss_pred HHHcCC-cceEEEcchhhchhhhcCCCccEEEECCCCCCCCC-----cccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025211 90 LEAHNV-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPE-----DEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..... ...++.+|+.+... .++||+|++||||..... .+....++..++.++..+...+..+++.+.++|
T Consensus 152 ~~~~~~~~i~~~~~d~~~~~~---~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~L 228 (275)
T PRK09328 152 AKHGLGARVEFLQGDWFEPLP---GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYL 228 (275)
T ss_pred HHhCCCCcEEEEEccccCcCC---CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhc
Confidence 872222 34888999865432 468999999999987544 334457788888999999999999999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEE
Q 025211 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l 208 (256)
+|||++++. .+......+...+.+.||..........+.+++.+
T Consensus 229 k~gG~l~~e-~g~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~ 272 (275)
T PRK09328 229 KPGGWLLLE-IGYDQGEAVRALLAAAGFADVETRKDLAGRDRVVL 272 (275)
T ss_pred ccCCEEEEE-ECchHHHHHHHHHHhCCCceeEEecCCCCCceEEE
Confidence 999999984 45666778899999999986666666666666544
No 12
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.91 E-value=1.1e-22 Score=169.88 Aligned_cols=185 Identities=28% Similarity=0.421 Sum_probs=151.2
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.+.++.|+++++.+++.+++.+. ..+.+|||+|||+|.+++.++.. .+++.++|+|+++.+++.++++
T Consensus 59 ~~~~~~~~~~p~~~~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~----~~~~~v~~iD~~~~~~~~a~~~ 130 (251)
T TIGR03534 59 DFKVSPGVLIPRPDTEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKE----RPDARVTAVDISPEALAVARKN 130 (251)
T ss_pred EEEECCCcccCCCChHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 456788899999999999999988764 34579999999999999888876 5678999999999999999999
Q ss_pred HHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCc-----ccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025211 90 LEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED-----EVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 90 ~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+..+++.. +++++|+.+.. ..++||+|++||||...... +....++..++.++..+...+..+++.+.++|
T Consensus 131 ~~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L 207 (251)
T TIGR03534 131 AARLGLDNVTFLQSDWFEPL---PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLL 207 (251)
T ss_pred HHHcCCCeEEEEECchhccC---cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 99888764 89999987643 24789999999999875542 22334666777788888888889999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccE
Q 025211 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENL 206 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 206 (256)
+|||++++. .+.....++.+.+.+.||....+........++
T Consensus 208 ~~gG~~~~~-~~~~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~ 249 (251)
T TIGR03534 208 KPGGWLLLE-IGYDQGEAVRALFEAAGFADVETRKDLAGKDRV 249 (251)
T ss_pred ccCCEEEEE-ECccHHHHHHHHHHhCCCCceEEEeCCCCCcCe
Confidence 999999985 445667789999999999877776666555554
No 13
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.91 E-value=1.2e-22 Score=173.79 Aligned_cols=172 Identities=23% Similarity=0.333 Sum_probs=138.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+.+.+++|.||++++.+++..+..+.. ..++.+|||+|||+|.+++.++.. .|+++|+|+|+|+.+++.|++|+
T Consensus 104 f~v~~~vlipr~~te~lv~~~l~~~~~--~~~~~~VLDlG~GsG~iai~la~~----~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 104 FYVDERVLVPRSPIAELIEDGFAPWLE--DPPVTRILDLCTGSGCIAIACAYA----FPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred EEECCCCcCCCCchHHHHHHHHHHHhc--cCCCCEEEEEechhhHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHH
Confidence 678999999999998888877653211 122379999999999999888876 67889999999999999999999
Q ss_pred HHcCCc--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc----cccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 91 EAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE----VGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 91 ~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
..+++. .+++++|+.+..+ .++||+|++||||....... ....++..++.++.+|...+..++..+.++|+
T Consensus 178 ~~~~l~~~i~~~~~D~~~~l~---~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~ 254 (307)
T PRK11805 178 ERHGLEDRVTLIESDLFAALP---GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT 254 (307)
T ss_pred HHhCCCCcEEEEECchhhhCC---CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC
Confidence 998874 4899999876542 35899999999998764421 12367788888999999999999999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025211 165 KRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
|||++++. .+.. ...+.+.+.+.++.+
T Consensus 255 pgG~l~~E-~g~~-~~~~~~~~~~~~~~~ 281 (307)
T PRK11805 255 EDGVLVVE-VGNS-RVHLEEAYPDVPFTW 281 (307)
T ss_pred CCCEEEEE-ECcC-HHHHHHHHhhCCCEE
Confidence 99999984 3344 456777787777655
No 14
>PRK14967 putative methyltransferase; Provisional
Probab=99.90 E-value=4.3e-22 Score=163.63 Aligned_cols=179 Identities=31% Similarity=0.418 Sum_probs=143.2
Q ss_pred eeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 9 RLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
..+...+++|.|..+++.+++.+...- ..++.+|||+|||+|.+++.+++. . ..+++++|+++.+++.+++
T Consensus 7 ~~~~~~~g~~~p~~ds~~l~~~l~~~~----~~~~~~vLDlGcG~G~~~~~la~~----~-~~~v~~vD~s~~~l~~a~~ 77 (223)
T PRK14967 7 DALLRAPGVYRPQEDTQLLADALAAEG----LGPGRRVLDLCTGSGALAVAAAAA----G-AGSVTAVDISRRAVRSARL 77 (223)
T ss_pred ceeecCCCCcCCCCcHHHHHHHHHhcc----cCCCCeEEEecCCHHHHHHHHHHc----C-CCeEEEEECCHHHHHHHHH
Confidence 347789999999999999888776532 146789999999999998877764 2 2489999999999999999
Q ss_pred HHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025211 89 TLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 89 ~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
|+..++....++++|+.+.. .+++||+|++||||............+...|..+..+...+..+++.+.++||+||+
T Consensus 78 n~~~~~~~~~~~~~d~~~~~---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~ 154 (223)
T PRK14967 78 NALLAGVDVDVRRGDWARAV---EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGS 154 (223)
T ss_pred HHHHhCCeeEEEECchhhhc---cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcE
Confidence 99988876788889987643 246899999999998776654444555666777777777888999999999999999
Q ss_pred EEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025211 169 LYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 169 l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
++++........++.+.+.+.+|........
T Consensus 155 l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 155 LLLVQSELSGVERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred EEEEEecccCHHHHHHHHHHCCCCeEEEEee
Confidence 9998776666778888888888876554433
No 15
>PLN02672 methionine S-methyltransferase
Probab=99.90 E-value=2.3e-22 Score=193.01 Aligned_cols=183 Identities=19% Similarity=0.292 Sum_probs=144.9
Q ss_pred eeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 10 LVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 10 ~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
.+.+.|++|+||++|+.+++. +...+.. ..++.+|||+|||+|.+++.+++. ++.++|+|+|+|+.+++.|++|
T Consensus 88 ~~~V~p~VLIPRpeTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~----~~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 88 TMMEIPSIFIPEDWSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEK----WLPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ceeeCCCcccCchhHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHH
Confidence 478999999999999999999 4432110 013579999999999999998887 6677999999999999999999
Q ss_pred HHHcCCc-----------------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc-----ccccc---------c
Q 025211 90 LEAHNVH-----------------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE-----VGREG---------I 138 (256)
Q Consensus 90 ~~~~~~~-----------------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~-----~~~~~---------~ 138 (256)
+..|+++ .+++++|+.+.... ...+||+||+||||...++.. +...+ +
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~-~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p 240 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD-NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSN 240 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccc-cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCc
Confidence 9987531 38899999876532 123699999999999877632 22222 3
Q ss_pred hhhhcC---CCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH-HHHHHcCCcEEEEEecC
Q 025211 139 ASAWAG---GENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC-LQMMEKGYAARIVVQRS 200 (256)
Q Consensus 139 ~~~~~~---~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~ 200 (256)
..++.+ +.+|+..+..++..+.++|+|||++++ ..+.++.+.+. +++++.||....++.+.
T Consensus 241 ~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l-EiG~~q~~~v~~~l~~~~gf~~~~~~~~~ 305 (1082)
T PLN02672 241 YCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF-NMGGRPGQAVCERLFERRGFRITKLWQTK 305 (1082)
T ss_pred cccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECccHHHHHHHHHHHHCCCCeeEEeeeh
Confidence 456655 588999999999999999999999998 56677788888 69999999887776543
No 16
>PRK14968 putative methyltransferase; Provisional
Probab=99.89 E-value=3.9e-21 Score=153.62 Aligned_cols=183 Identities=31% Similarity=0.532 Sum_probs=141.5
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025211 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
-+++|+|+.++..+++.+.. .++++|||+|||+|.++..++.. +.+++|+|+++++++.+++++..+
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~-------~~~~~vLd~G~G~G~~~~~l~~~------~~~v~~~D~s~~~~~~a~~~~~~~ 68 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD-------KKGDRVLEVGTGSGIVAIVAAKN------GKKVVGVDINPYAVECAKCNAKLN 68 (188)
T ss_pred CCcccCcchhHHHHHHhhhc-------cCCCEEEEEccccCHHHHHHHhh------cceEEEEECCHHHHHHHHHHHHHc
Confidence 46789999998888887654 26789999999999988777664 468999999999999999999888
Q ss_pred CCc---ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 94 NVH---ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~~---~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++. ..++.+|+.+... +.+||+|++||||...........+....+..+..+...+..+++++.++|||||.++
T Consensus 69 ~~~~~~~~~~~~d~~~~~~---~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~ 145 (188)
T PRK14968 69 NIRNNGVEVIRSDLFEPFR---GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRIL 145 (188)
T ss_pred CCCCcceEEEecccccccc---ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEE
Confidence 765 4778888766432 3489999999999875543322223344555566666678899999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEE
Q 025211 171 LVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFW 212 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ 212 (256)
++.+.......+...+.+.||+...........+...++...
T Consensus 146 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T PRK14968 146 LLQSSLTGEDEVLEYLEKLGFEAEVVAEEKFPFEELIVLELV 187 (188)
T ss_pred EEEcccCCHHHHHHHHHHCCCeeeeeeecccCCceEEEEEEe
Confidence 987776667889999999999877766665555555555443
No 17
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.88 E-value=1.5e-21 Score=153.73 Aligned_cols=141 Identities=28% Similarity=0.519 Sum_probs=110.9
Q ss_pred eeccCCccccCC---chHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025211 11 VSSHPEVYEPCD---DSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~---~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+-.+|++|.|.. .+++|++.+... +..+|||+|||+|.+++.+++. .+..+|+++|+++.+++.++
T Consensus 4 ~~~~~gvFs~~~~d~~t~lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~----~~~~~v~~vDi~~~a~~~a~ 72 (170)
T PF05175_consen 4 FITHPGVFSPPRLDAGTRLLLDNLPKH-------KGGRVLDLGCGSGVISLALAKR----GPDAKVTAVDINPDALELAK 72 (170)
T ss_dssp EEEETTSTTTTSHHHHHHHHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHT----STCEEEEEEESBHHHHHHHH
T ss_pred EEECCCeeCCCCCCHHHHHHHHHHhhc-------cCCeEEEecCChHHHHHHHHHh----CCCCEEEEEcCCHHHHHHHH
Confidence 557899998553 266777766665 5789999999999999888876 77888999999999999999
Q ss_pred HHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025211 88 KTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..+++. .+++..|+.+... +++||+|++|||+..- ...+......++..+.++||||
T Consensus 73 ~n~~~n~~~~v~~~~~d~~~~~~---~~~fD~Iv~NPP~~~~----------------~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 73 RNAERNGLENVEVVQSDLFEALP---DGKFDLIVSNPPFHAG----------------GDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp HHHHHTTCTTEEEEESSTTTTCC---TTCEEEEEE---SBTT----------------SHCHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHhcCcccccccccccccccc---ccceeEEEEccchhcc----------------cccchhhHHHHHHHHHHhccCC
Confidence 999999988 5899999877644 4799999999996432 2224567889999999999999
Q ss_pred eEEEEEEeCCCCHHH
Q 025211 167 GWLYLVTLTANDPSQ 181 (256)
Q Consensus 167 G~l~~~~~~~~~~~~ 181 (256)
|.++++.........
T Consensus 134 G~l~lv~~~~~~~~~ 148 (170)
T PF05175_consen 134 GRLFLVINSHLGYER 148 (170)
T ss_dssp EEEEEEEETTSCHHH
T ss_pred CEEEEEeecCCChHH
Confidence 999887765443333
No 18
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.83 E-value=6.1e-19 Score=153.89 Aligned_cols=168 Identities=17% Similarity=0.237 Sum_probs=119.6
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025211 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+..+|+||..... ++++.+ .++ ...+.+|||+|||+|.+++.+++. +|+++|+++|+|+.+++.++
T Consensus 201 ~~~~~gVFs~~~LD~GtrllL~----~lp---~~~~~~VLDLGCGtGvi~i~la~~----~P~~~V~~vD~S~~Av~~A~ 269 (378)
T PRK15001 201 IHNHANVFSRTGLDIGARFFMQ----HLP---ENLEGEIVDLGCGNGVIGLTLLDK----NPQAKVVFVDESPMAVASSR 269 (378)
T ss_pred EEecCCccCCCCcChHHHHHHH----hCC---cccCCeEEEEeccccHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 6678999987632 555444 332 123579999999999999888877 78899999999999999999
Q ss_pred HHHHHcCCc----ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025211 88 KTLEAHNVH----ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 88 ~~~~~~~~~----~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
+|+..|+.. .+++..|+.+.. .+++||+|+|||||+..... .......++..+.++|
T Consensus 270 ~N~~~n~~~~~~~v~~~~~D~l~~~---~~~~fDlIlsNPPfh~~~~~----------------~~~ia~~l~~~a~~~L 330 (378)
T PRK15001 270 LNVETNMPEALDRCEFMINNALSGV---EPFRFNAVLCNPPFHQQHAL----------------TDNVAWEMFHHARRCL 330 (378)
T ss_pred HHHHHcCcccCceEEEEEccccccC---CCCCEEEEEECcCcccCccC----------------CHHHHHHHHHHHHHhc
Confidence 999988743 277888876543 23589999999999743211 1123568899999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEecC
Q 025211 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWRDF 215 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~ 215 (256)
+|||.++++.... ......+++. |... .......++.++++.|..
T Consensus 331 kpGG~L~iV~nr~---l~y~~~L~~~-fg~~---~~va~~~kf~vl~a~k~~ 375 (378)
T PRK15001 331 KINGELYIVANRH---LDYFHKLKKI-FGNC---TTIATNNKFVVLKAVKLG 375 (378)
T ss_pred ccCCEEEEEEecC---cCHHHHHHHH-cCCc---eEEccCCCEEEEEEEeCC
Confidence 9999999986322 2233445443 2221 223556677888887743
No 19
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=9.3e-19 Score=145.82 Aligned_cols=165 Identities=22% Similarity=0.358 Sum_probs=119.5
Q ss_pred eeccCCccccCCc---hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025211 11 VSSHPEVYEPCDD---SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~~---~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
|..+|++|.-... +++|++.+... .+.+|||+|||.|.+++.+++. +|+..++.+|+|..+++.++
T Consensus 131 ~~t~pGVFS~~~lD~GS~lLl~~l~~~-------~~~~vlDlGCG~Gvlg~~la~~----~p~~~vtmvDvn~~Av~~ar 199 (300)
T COG2813 131 FKTLPGVFSRDKLDKGSRLLLETLPPD-------LGGKVLDLGCGYGVLGLVLAKK----SPQAKLTLVDVNARAVESAR 199 (300)
T ss_pred EEeCCCCCcCCCcChHHHHHHHhCCcc-------CCCcEEEeCCCccHHHHHHHHh----CCCCeEEEEecCHHHHHHHH
Confidence 5678888876543 55555544333 4559999999999999998888 88999999999999999999
Q ss_pred HHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025211 88 KTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+|+..|+.+. .+...|..+... ++||+|||||||+.--. ........++....+.|++|
T Consensus 200 ~Nl~~N~~~~~~v~~s~~~~~v~----~kfd~IisNPPfh~G~~----------------v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 200 KNLAANGVENTEVWASNLYEPVE----GKFDLIISNPPFHAGKA----------------VVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred HhHHHcCCCccEEEEeccccccc----ccccEEEeCCCccCCcc----------------hhHHHHHHHHHHHHHhhccC
Confidence 9999999988 788888777643 48999999999973221 11223458999999999999
Q ss_pred eEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025211 167 GWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 167 G~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
|.+.++.... ......|.+. |....+..+ ...+.+++.+|
T Consensus 260 GeL~iVan~~---l~y~~~L~~~-Fg~v~~la~---~~gf~Vl~a~k 299 (300)
T COG2813 260 GELWIVANRH---LPYEKKLKEL-FGNVEVLAK---NGGFKVLRAKK 299 (300)
T ss_pred CEEEEEEcCC---CChHHHHHHh-cCCEEEEEe---CCCEEEEEEec
Confidence 9999987632 2345555544 332222222 23346666554
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.81 E-value=3.3e-19 Score=131.67 Aligned_cols=114 Identities=29% Similarity=0.453 Sum_probs=90.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
|.+|||+|||+|.+++.+++. + ..+++|+|+++.+++.++.++..+++. .+++++|+.+.......++||+|+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~----~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRR----G-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHH----C-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEE
T ss_pred CCEEEEcCcchHHHHHHHHHH----C-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEE
Confidence 468999999999999888887 4 469999999999999999999998874 399999998886555678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+||||.......... ......+++.+.++|+|||+++++.+
T Consensus 76 ~npP~~~~~~~~~~~-------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 76 TNPPYGPRSGDKAAL-------------RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp E--STTSBTT----G-------------GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ECCCCccccccchhh-------------HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 999998653322110 11367889999999999999999875
No 21
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.80 E-value=7.3e-18 Score=146.17 Aligned_cols=136 Identities=25% Similarity=0.425 Sum_probs=105.3
Q ss_pred eeccCCccccCC-c--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025211 11 VSSHPEVYEPCD-D--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 11 ~~~~~~~~~p~~-~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+...|++|.... | +..+.+.+.. ....+|||+|||+|.+++.+++. +|+..++++|+++.+++.++
T Consensus 169 i~~~pgvFs~~~lD~gt~lLl~~l~~-------~~~g~VLDlGCG~G~ls~~la~~----~p~~~v~~vDis~~Al~~A~ 237 (342)
T PRK09489 169 VKTLPGVFSRDGLDVGSQLLLSTLTP-------HTKGKVLDVGCGAGVLSAVLARH----SPKIRLTLSDVSAAALESSR 237 (342)
T ss_pred EEeCCCCCCCCCCCHHHHHHHHhccc-------cCCCeEEEeccCcCHHHHHHHHh----CCCCEEEEEECCHHHHHHHH
Confidence 556788776643 3 4555554432 23468999999999998888776 77889999999999999999
Q ss_pred HHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025211 88 KTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+++..+++..+++..|+.+.. .++||+|++||||+..... .......++..+.++|||||
T Consensus 238 ~nl~~n~l~~~~~~~D~~~~~----~~~fDlIvsNPPFH~g~~~----------------~~~~~~~~i~~a~~~LkpgG 297 (342)
T PRK09489 238 ATLAANGLEGEVFASNVFSDI----KGRFDMIISNPPFHDGIQT----------------SLDAAQTLIRGAVRHLNSGG 297 (342)
T ss_pred HHHHHcCCCCEEEEccccccc----CCCccEEEECCCccCCccc----------------cHHHHHHHHHHHHHhcCcCC
Confidence 999999887788888876532 4689999999999742211 12346889999999999999
Q ss_pred EEEEEEeCCC
Q 025211 168 WLYLVTLTAN 177 (256)
Q Consensus 168 ~l~~~~~~~~ 177 (256)
.++++....-
T Consensus 298 ~L~iVan~~l 307 (342)
T PRK09489 298 ELRIVANAFL 307 (342)
T ss_pred EEEEEEeCCC
Confidence 9999876543
No 22
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.79 E-value=1.6e-17 Score=141.83 Aligned_cols=197 Identities=13% Similarity=0.206 Sum_probs=131.7
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhc-----ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC
Q 025211 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRI-----NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI 78 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~-----~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~ 78 (256)
.|++...++.++.++|.-. +.-++.++.+.+. .++.+++.+|||||||+|++...++.. .+++.++|+|+
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~----~~~~~~~atDI 146 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVH----EYGWRFVGSDI 146 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhh----CCCCEEEEEeC
Confidence 4555544688888888876 6666677766653 233456799999999999875544443 56899999999
Q ss_pred CHHHHHHHHHHHHHc-CCcc--eEEE-cchhhchhhh--cCCCccEEEECCCCCCCCCccccc---c-------cc----
Q 025211 79 NPYAVEVTRKTLEAH-NVHA--DLIN-TDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGR---E-------GI---- 138 (256)
Q Consensus 79 ~~~~i~~a~~~~~~~-~~~~--~~~~-~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~---~-------~~---- 138 (256)
++.+++.|++|+..| ++.. .+.. .|..+..... ..+.||+|+|||||+......... + ..
T Consensus 147 d~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 147 DPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred CHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 999999999999999 6765 4433 3333322211 246899999999999876642110 0 00
Q ss_pred ------hhh-h-cCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE-EecCCCCccEE
Q 025211 139 ------ASA-W-AGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIV-VQRSTEEENLH 207 (256)
Q Consensus 139 ------~~~-~-~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~ 207 (256)
... | .||+ ..+...++++...+++..|++..+.........+.+.+++.|.....+ .-.++...++.
T Consensus 227 l~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~qG~~~~~~ 302 (321)
T PRK11727 227 LNFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQGQKQSRF 302 (321)
T ss_pred cCCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeCCCeeeEE
Confidence 011 1 2333 235667788888888888887776666777888999999888854433 33334433333
No 23
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.79 E-value=1e-17 Score=132.96 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=111.7
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025211 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
.+|.+..+.+-+.+.+.+......++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.++++++.++++.
T Consensus 18 ~~~~~~~~~~~~~~~d~i~~~~~~~~~~vLDiGcGtG~~s~~la~~----~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~ 93 (181)
T TIGR00138 18 TSLKTPEEIWERHILDSLKLLEYLDGKKVIDIGSGAGFPGIPLAIA----RPELKLTLLESNHKKVAFLREVKAELGLNN 93 (181)
T ss_pred cccCCHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCccHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHhCCCC
Confidence 3444433444444444332222235899999999999999888765 667899999999999999999999888754
Q ss_pred -eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 98 -DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 -~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+++++|+.+.. ..++||+|+++. +. .+..+++.+.++|+|||++++... .
T Consensus 94 i~~i~~d~~~~~---~~~~fD~I~s~~-~~------------------------~~~~~~~~~~~~LkpgG~lvi~~~-~ 144 (181)
T TIGR00138 94 VEIVNGRAEDFQ---HEEQFDVITSRA-LA------------------------SLNVLLELTLNLLKVGGYFLAYKG-K 144 (181)
T ss_pred eEEEecchhhcc---ccCCccEEEehh-hh------------------------CHHHHHHHHHHhcCCCCEEEEEcC-C
Confidence 89999998752 247899999974 11 146778888999999999998653 4
Q ss_pred CCHHHHHHHHHH---cCCcEEEEEecCCCCccEEE
Q 025211 177 NDPSQICLQMME---KGYAARIVVQRSTEEENLHI 208 (256)
Q Consensus 177 ~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~l 208 (256)
....++....+. .|++.+...+...+..++++
T Consensus 145 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 179 (181)
T TIGR00138 145 KYLDEIEEAKRKCQVLGVEPLEVPPLTGPDRHLVI 179 (181)
T ss_pred CcHHHHHHHHHhhhhcCceEeeccccCCCceEEEE
Confidence 445555555444 57777666666555444444
No 24
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=3e-17 Score=137.62 Aligned_cols=149 Identities=23% Similarity=0.297 Sum_probs=115.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
|.++++++-.+. +++.+|||+|||||.+++++++. +. ..++|+|++|.+++.+++|+.+|++.. ....
T Consensus 149 T~lcL~~Le~~~-----~~g~~vlDvGcGSGILaIAa~kL----GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~ 218 (300)
T COG2264 149 TSLCLEALEKLL-----KKGKTVLDVGCGSGILAIAAAKL----GA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKG 218 (300)
T ss_pred HHHHHHHHHHhh-----cCCCEEEEecCChhHHHHHHHHc----CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhccc
Confidence 788888888875 48999999999999999998887 22 379999999999999999999999874 3333
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025211 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.+..... ..++||+|++|-- -..+..+...+.+.|||||+++++-.-.+..+.
T Consensus 219 ~~~~~~~---~~~~~DvIVANIL------------------------A~vl~~La~~~~~~lkpgg~lIlSGIl~~q~~~ 271 (300)
T COG2264 219 FLLLEVP---ENGPFDVIVANIL------------------------AEVLVELAPDIKRLLKPGGRLILSGILEDQAES 271 (300)
T ss_pred ccchhhc---ccCcccEEEehhh------------------------HHHHHHHHHHHHHHcCCCceEEEEeehHhHHHH
Confidence 3332221 2368999999841 134668888999999999999998776667778
Q ss_pred HHHHHHHcCCcEEEEEecCCCCccEEEEEEEe
Q 025211 182 ICLQMMEKGYAARIVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~ 213 (256)
+...+.+.||.+..+..+ +.++.+.++|
T Consensus 272 V~~a~~~~gf~v~~~~~~----~eW~~i~~kr 299 (300)
T COG2264 272 VAEAYEQAGFEVVEVLER----EEWVAIVGKR 299 (300)
T ss_pred HHHHHHhCCCeEeEEEec----CCEEEEEEEc
Confidence 889998999997766655 3334444443
No 25
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.77 E-value=8.7e-17 Score=128.00 Aligned_cols=135 Identities=16% Similarity=0.167 Sum_probs=105.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|.+++.++.. .++++|+|+|+++.+++.|++++..++++. +++++|+.+... .++||+|+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~----~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---~~~fDlV~ 117 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIA----RPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---EEKFDVVT 117 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHH----CCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---CCCccEEE
Confidence 4799999999999998888876 678899999999999999999999998864 899999887532 56899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE---
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV--- 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 197 (256)
++. + .....+++.+.++|+|||+++++.. ......+....+..|+....++
T Consensus 118 ~~~-~------------------------~~~~~~l~~~~~~LkpGG~lv~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ 171 (187)
T PRK00107 118 SRA-V------------------------ASLSDLVELCLPLLKPGGRFLALKG-RDPEEEIAELPKALGGKVEEVIELT 171 (187)
T ss_pred Ecc-c------------------------cCHHHHHHHHHHhcCCCeEEEEEeC-CChHHHHHHHHHhcCceEeeeEEEe
Confidence 962 0 0157889999999999999999764 4456677778888898754433
Q ss_pred -ecCCCCccEEEE
Q 025211 198 -QRSTEEENLHII 209 (256)
Q Consensus 198 -~~~~~~~~~~l~ 209 (256)
+...++.++.++
T Consensus 172 ~~~~~~~~~~~~~ 184 (187)
T PRK00107 172 LPGLDGERHLVII 184 (187)
T ss_pred cCCCCCcEEEEEE
Confidence 333445555444
No 26
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.76 E-value=4.7e-17 Score=141.18 Aligned_cols=155 Identities=18% Similarity=0.223 Sum_probs=114.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025211 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.+.|.+-...++..+++... .+++.+|||+|||+|.++++++.. +..++|+|+++.|++.++.|+...++.
T Consensus 160 ~~~~~~l~~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~------~~~v~g~Di~~~~~~~a~~nl~~~g~~ 230 (329)
T TIGR01177 160 FFKPGSMDPKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM------GAKVIGCDIDWKMVAGARINLEHYGIE 230 (329)
T ss_pred ccCCCCCCHHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh------CCeEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 34454445556666655432 257889999999999998887654 468999999999999999999988877
Q ss_pred c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 97 A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
. .+.++|+.+.. ..+++||+|++||||....... +......+..++..+.+.|+|||+++++.+.
T Consensus 231 ~i~~~~~D~~~l~--~~~~~~D~Iv~dPPyg~~~~~~------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~ 296 (329)
T TIGR01177 231 DFFVKRGDATKLP--LSSESVDAIATDPPYGRSTTAA------------GDGLESLYERSLEEFHEVLKSEGWIVYAVPT 296 (329)
T ss_pred CCeEEecchhcCC--cccCCCCEEEECCCCcCccccc------------CCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence 6 88899988753 2357899999999997543211 1111234688999999999999999998765
Q ss_pred CCCHHHHHHHHHHcCCcEEEEEe
Q 025211 176 ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.. ++...++..|| +...+.
T Consensus 297 ~~---~~~~~~~~~g~-i~~~~~ 315 (329)
T TIGR01177 297 RI---DLESLAEDAFR-VVKRFE 315 (329)
T ss_pred CC---CHHHHHhhcCc-chheee
Confidence 43 45567888899 544443
No 27
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.75 E-value=2.1e-17 Score=135.11 Aligned_cols=121 Identities=19% Similarity=0.256 Sum_probs=98.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+|.+|||+|||||.+++.+++.. +.+.|+|+|+|+.|++.+++.....+.. .+++++|+.+. ++.+++||++
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~----g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~L--Pf~D~sFD~v 123 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSV----GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENL--PFPDNSFDAV 123 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhc----CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhC--CCCCCccCEE
Confidence 378999999999999998888874 4679999999999999999999876655 48999999887 5778999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+..-+.+.++ .+.+|+++.|+|||||++++..........+...+..
T Consensus 124 t~~fglrnv~d---------------------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~ 171 (238)
T COG2226 124 TISFGLRNVTD---------------------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYIL 171 (238)
T ss_pred EeeehhhcCCC---------------------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHH
Confidence 99765544443 6899999999999999999877655444344444433
No 28
>PHA03411 putative methyltransferase; Provisional
Probab=99.75 E-value=4.1e-17 Score=135.25 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=105.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.+++.++.. .++.+|+|+|+++.+++.++++.. ..+++++|+.+... ..+||+|+
T Consensus 63 ~~~grVLDLGcGsGilsl~la~r----~~~~~V~gVDisp~al~~Ar~n~~----~v~~v~~D~~e~~~---~~kFDlII 131 (279)
T PHA03411 63 HCTGKVLDLCAGIGRLSFCMLHR----CKPEKIVCVELNPEFARIGKRLLP----EAEWITSDVFEFES---NEKFDVVI 131 (279)
T ss_pred ccCCeEEEcCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHhCc----CCEEEECchhhhcc---cCCCcEEE
Confidence 35679999999999988777665 445699999999999999988742 34889999987642 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHH--HHHHHHHHhhccccCeEEEEEEeCCC------CHHHHHHHHHHcCCc
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAV--IDKILPSADKLLSKRGWLYLVTLTAN------DPSQICLQMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~LkpgG~l~~~~~~~~------~~~~~~~~~~~~g~~ 192 (256)
+||||++.+..+. ....++.+|..+.+. +..++.....+|+|+|.++++..+.. ..++..+++++.||.
T Consensus 132 sNPPF~~l~~~d~---~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~~ 208 (279)
T PHA03411 132 SNPPFGKINTTDT---KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGLV 208 (279)
T ss_pred EcCCccccCchhh---hhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCcE
Confidence 9999998654332 122455566666665 47899999999999999888654322 456889999999876
Q ss_pred E
Q 025211 193 A 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 209 ~ 209 (279)
T PHA03411 209 T 209 (279)
T ss_pred e
Confidence 4
No 29
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.75 E-value=3.4e-17 Score=119.86 Aligned_cols=108 Identities=19% Similarity=0.320 Sum_probs=84.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
|+.+|||+|||+|.+++.+++. .++++|+|+|+++++++.|++++...+.. .+++++|+ ..... ..+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~-~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARL----FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPD-FLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHH----HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTT-TSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcc-cCCCCCEE
Confidence 5789999999999999999885 57889999999999999999999665543 38999999 32222 24679999
Q ss_pred EECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 120 VVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++. ...... .......+++.+.+.|+|||++++.+
T Consensus 75 ~~~~~~~~~~~------------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLL------------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCC------------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCcccccc------------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9975 111000 11235788999999999999999864
No 30
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.73 E-value=5e-16 Score=128.25 Aligned_cols=136 Identities=14% Similarity=0.182 Sum_probs=104.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++.+ .+++.|+|+|+++.+++.+++++...+.+. +++.+|+.+.. +.+++||+|
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V 118 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAV---GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP--FDDNSFDYV 118 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC--CCCCCccEE
Confidence 567899999999999988887763 356799999999999999999988776654 88889987652 335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------------------
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------------- 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------------- 177 (256)
+++..+.+.++ ...+++++.++|+|||++++++....
T Consensus 119 ~~~~~l~~~~~---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 177 (231)
T TIGR02752 119 TIGFGLRNVPD---------------------YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGK 177 (231)
T ss_pred EEecccccCCC---------------------HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhH
Confidence 99866544332 46789999999999999998664321
Q ss_pred --------------------CHHHHHHHHHHcCCcEEEEEecCCC
Q 025211 178 --------------------DPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 178 --------------------~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
...++.+.+++.||....+.....+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g 222 (231)
T TIGR02752 178 LFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKSYTGG 222 (231)
T ss_pred HhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEEcccc
Confidence 1245677888889987766655543
No 31
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.73 E-value=4.5e-17 Score=125.96 Aligned_cols=110 Identities=25% Similarity=0.410 Sum_probs=90.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..++..+ +++.+++|+|+++++++.|++++...+.+. +++++|+.+.... ..+.||+|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~---~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I 77 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKEL---NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDII 77 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHS---TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhc---CCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEE
Confidence 467999999999999998888532 567899999999999999999999988875 9999999994222 22789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+++.++++..+ ...+++.+.++|+++|++++....
T Consensus 78 ~~~~~l~~~~~---------------------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 78 ISNGVLHHFPD---------------------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEESTGGGTSH---------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEcCchhhccC---------------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 99887643322 568899999999999999997765
No 32
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.73 E-value=7.9e-17 Score=130.34 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=104.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch-hhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI-ASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~-~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. .|+.+|+|+|+++++++.|++++..+++.. .++++|+ ......+.+++||+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~----~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~ 114 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKA----NPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDR 114 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHH----CCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccce
Confidence 46789999999999999888776 567799999999999999999999888754 8999998 44322234678999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
|+++.|........ .........+++.+.++|||||++++++.......++.+.+++.|+...
T Consensus 115 V~~~~~~p~~~~~~-------------~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 115 IYLNFPDPWPKKRH-------------HKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred EEEECCCCCCCccc-------------cccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCccccc
Confidence 99976431111000 0000114688999999999999999988777777788888988887644
No 33
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.73 E-value=3e-17 Score=135.18 Aligned_cols=120 Identities=19% Similarity=0.283 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||||.++..+++.+ .+++.|+|+|+|+.|++.|++++...+... +++++|+.+. ++.+++||+|
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~---~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l--p~~d~sfD~v 120 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV---GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL--PFPDNSFDAV 120 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS---S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT-EEEE
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC---CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh--cCCCCceeEE
Confidence 578999999999999887776653 356799999999999999999998877644 9999999886 4557999999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
++..-+.+.++ ....+++++++|||||+++++..+......+...+
T Consensus 121 ~~~fglrn~~d---------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 121 TCSFGLRNFPD---------------------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp EEES-GGG-SS---------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred EHHhhHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 99654433322 57889999999999999999876555443344333
No 34
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.72 E-value=1.2e-15 Score=122.02 Aligned_cols=122 Identities=20% Similarity=0.268 Sum_probs=98.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.+++.+++. +++++|+++|+++.+++.+++|+..+++.. +++.+|.... ..++||+|
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~----~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~----~~~~~D~v 101 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQ----FPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE----LPGKADAI 101 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh----cCcCCCEE
Confidence 36789999999999999888876 677899999999999999999998887654 7888886432 23689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
+++.... .+..++..+.+.|+|||++++.........++.+.+.+.||...
T Consensus 102 ~~~~~~~------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 102 FIGGSGG------------------------NLTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCGVSEL 152 (187)
T ss_pred EECCCcc------------------------CHHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCCCCcc
Confidence 9863210 14678889999999999999876566667788999999998643
No 35
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.72 E-value=8.1e-16 Score=119.72 Aligned_cols=122 Identities=20% Similarity=0.248 Sum_probs=106.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
..++.+++|+|||||.++++++.. +|.++++++|-++++++..++|.+..+.++ .++.+++.+.+... .+||.
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~----~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~--~~~da 105 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALA----GPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL--PSPDA 105 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHh----CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC--CCCCE
Confidence 468999999999999999999966 788999999999999999999999999887 99999998887653 27999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|+.. |.. ..+.+++.+...|+|||++++..........+.+.+++.|+.
T Consensus 106 iFIG----------------------Gg~---~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~ 154 (187)
T COG2242 106 IFIG----------------------GGG---NIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR 154 (187)
T ss_pred EEEC----------------------CCC---CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence 9873 222 278999999999999999999877777777889999999983
No 36
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.71 E-value=2.1e-16 Score=133.67 Aligned_cols=135 Identities=22% Similarity=0.308 Sum_probs=103.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
|.++++.+..+. .++++|||+|||||.+++.+++. +. .+|+|+|++|.+++.|++|+..|++..++....
T Consensus 148 T~lcl~~l~~~~-----~~g~~vLDvG~GSGILaiaA~kl----GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~ 217 (295)
T PF06325_consen 148 TRLCLELLEKYV-----KPGKRVLDVGCGSGILAIAAAKL----GA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSL 217 (295)
T ss_dssp HHHHHHHHHHHS-----STTSEEEEES-TTSHHHHHHHHT----TB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC
T ss_pred HHHHHHHHHHhc-----cCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE
Confidence 788888887774 57899999999999999988886 22 379999999999999999999999987554432
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
..+ ...++||+|++|-- ...+..++..+.++|+|||+++++-.-..+..++.
T Consensus 218 ~~~----~~~~~~dlvvANI~------------------------~~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~ 269 (295)
T PF06325_consen 218 SED----LVEGKFDLVVANIL------------------------ADVLLELAPDIASLLKPGGYLILSGILEEQEDEVI 269 (295)
T ss_dssp TSC----TCCS-EEEEEEES-------------------------HHHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHH
T ss_pred ecc----cccccCCEEEECCC------------------------HHHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHH
Confidence 222 22478999999843 23467788889999999999999877666778888
Q ss_pred HHHHHcCCcEEEEE
Q 025211 184 LQMMEKGYAARIVV 197 (256)
Q Consensus 184 ~~~~~~g~~~~~~~ 197 (256)
+.+.+ ||......
T Consensus 270 ~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 270 EAYKQ-GFELVEER 282 (295)
T ss_dssp HHHHT-TEEEEEEE
T ss_pred HHHHC-CCEEEEEE
Confidence 88866 88764443
No 37
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.70 E-value=2.1e-15 Score=126.67 Aligned_cols=108 Identities=12% Similarity=0.099 Sum_probs=84.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCC-cceEEEcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNV-HADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~-~~~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+|||+|||+|.++..+++.. .++++|+|+|+|++|++.|+++... ... +.+++++|+.+. ++.+++|
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~---~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l--p~~~~sf 146 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKV---GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL--PFDDCYF 146 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC--CCCCCCE
Confidence 467899999999999887777653 3457999999999999999877542 112 238899998775 3446789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+++..+++.++ ...+++++.++|||||+++++..
T Consensus 147 D~V~~~~~l~~~~d---------------------~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 147 DAITMGYGLRNVVD---------------------RLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred eEEEEecccccCCC---------------------HHHHHHHHHHHcCcCcEEEEEEC
Confidence 99999866654433 56889999999999999988764
No 38
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.70 E-value=1.3e-15 Score=137.24 Aligned_cols=154 Identities=14% Similarity=0.196 Sum_probs=114.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|. ++++... ++.+++.+++.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+|+.|++.|++
T Consensus 267 f~~~~~~F~q~n~~~~e~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~------~~~V~gvD~s~~al~~A~~ 337 (443)
T PRK13168 267 LAFSPRDFIQVNAQVNQKMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQ------AAEVVGVEGVEAMVERARE 337 (443)
T ss_pred EEECCCCeEEcCHHHHHHHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHh------CCEEEEEeCCHHHHHHHHH
Confidence 344455 4466655 7888888887764 246789999999999999988876 2489999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025211 89 TLEAHNVHA-DLINTDIASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++++|+.+.... +.+++||+|++||||.. ....++.+.+ ++|
T Consensus 338 n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g------------------------~~~~~~~l~~-~~~ 392 (443)
T PRK13168 338 NARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG------------------------AAEVMQALAK-LGP 392 (443)
T ss_pred HHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC------------------------hHHHHHHHHh-cCC
Confidence 999998765 9999999876432 23467999999999852 2344555554 699
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025211 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
++++++++.+.+...++... .+.||.+..+.+.
T Consensus 393 ~~ivyvSCnp~tlaRDl~~L-~~~gY~l~~i~~~ 425 (443)
T PRK13168 393 KRIVYVSCNPATLARDAGVL-VEAGYRLKRAGML 425 (443)
T ss_pred CeEEEEEeChHHhhccHHHH-hhCCcEEEEEEEe
Confidence 99999977666655565544 4678887766543
No 39
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.69 E-value=6e-16 Score=136.55 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=105.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhc--CCCc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRL--AGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~--~~~f 116 (256)
++++|||+|||+|.+++.++.. ....|+++|+|+.+++.|++|+..|+++ .+++++|+.+.+.... .++|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-----ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~f 294 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-----GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF 294 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-----CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCC
Confidence 6789999999999998765532 2348999999999999999999999974 3899999998765432 4589
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHH----HHHHHHcCC
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQI----CLQMMEKGY 191 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~----~~~~~~~g~ 191 (256)
|+|++||||+...... .. .....+..++..+.++|+|||+++..+++.. ..+++ .+...+.|-
T Consensus 295 DlVilDPP~f~~~k~~---------l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~ 362 (396)
T PRK15128 295 DVIVMDPPKFVENKSQ---------LM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGR 362 (396)
T ss_pred CEEEECCCCCCCChHH---------HH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999998654321 00 0122367788889999999999998766433 22333 333444565
Q ss_pred cEEEEEecCCCCcc
Q 025211 192 AARIVVQRSTEEEN 205 (256)
Q Consensus 192 ~~~~~~~~~~~~~~ 205 (256)
....+.....+.++
T Consensus 363 ~~~~l~~~~~~~Dh 376 (396)
T PRK15128 363 DVQFIEQFRQAADH 376 (396)
T ss_pred eEEEEEEcCCCCCC
Confidence 66666555444444
No 40
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.69 E-value=5.6e-16 Score=124.63 Aligned_cols=134 Identities=17% Similarity=0.249 Sum_probs=101.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~I 119 (256)
...+|||+|||+|.++..+++. +|+..++|+|+++.+++.|++++...++.+ +++++|+.+...... ++++|.|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~----~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQ----NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKV 91 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEE
Confidence 5679999999999999888877 788899999999999999999998888765 999999987654333 4589999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC-Cc
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG-YA 192 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~ 192 (256)
++|+|-...... +. .. ......++..+.++|||||.+++.+.......++...+...+ |.
T Consensus 92 ~~~~pdpw~k~~----h~-~~--------r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~~f~ 152 (194)
T TIGR00091 92 FLNFPDPWPKKR----HN-KR--------RITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFE 152 (194)
T ss_pred EEECCCcCCCCC----cc-cc--------ccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCCCeE
Confidence 998752111100 00 00 011367899999999999999998765555666677777665 44
No 41
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.69 E-value=2e-15 Score=135.29 Aligned_cols=145 Identities=19% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|..++.++.. .++..|+|+|+++.+++.+++|+..+++...++++|+.+.......++||.|+
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~----~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl 318 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILEL----APQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRIL 318 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHH----cCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEE
Confidence 57899999999999999888887 34469999999999999999999999887789999987643222246799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-CCc
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK-GYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~-g~~ 192 (256)
+|||+...... .+.+...|...... ......++..+.++|||||++++++++.. ....+...++++ ++.
T Consensus 319 ~D~Pcs~~G~~---~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 395 (427)
T PRK10901 319 LDAPCSATGVI---RRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAE 395 (427)
T ss_pred ECCCCCccccc---ccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCE
Confidence 99998743221 12222222211110 12356889999999999999999887544 233455566554 343
No 42
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.69 E-value=7e-16 Score=124.36 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=83.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+|||+|||+|..++.+++. +++|+|+|+|+.+++.+++++...++.. ++...|+.+... +++||+|+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~fD~I~ 100 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAAN------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF---DGEYDFIL 100 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---CCCcCEEE
Confidence 5689999999999998887764 4699999999999999999998887764 788888876522 36799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..++..+. .....++..+.++|+|||+++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 101 STVVLMFLEA-------------------KTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred EecchhhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence 9876543322 126789999999999999966543
No 43
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.69 E-value=2e-16 Score=127.40 Aligned_cols=113 Identities=21% Similarity=0.337 Sum_probs=92.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||.|.++..+|++ ++.|+|+|+++++++.|+....++++..+..+..+.+.... .++||+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~------Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~--~~~FDvV~ 129 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL------GASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASA--GGQFDVVT 129 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC------CCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhc--CCCccEEE
Confidence 37899999999999999988887 57999999999999999999999998877777777766433 27999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQI 182 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 182 (256)
|.=...|.++ .+.++..|.+++||||.+++++...+....+
T Consensus 130 cmEVlEHv~d---------------------p~~~~~~c~~lvkP~G~lf~STinrt~ka~~ 170 (243)
T COG2227 130 CMEVLEHVPD---------------------PESFLRACAKLVKPGGILFLSTINRTLKAYL 170 (243)
T ss_pred EhhHHHccCC---------------------HHHHHHHHHHHcCCCcEEEEeccccCHHHHH
Confidence 9644444433 4679999999999999999988766544433
No 44
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.69 E-value=3.2e-15 Score=134.77 Aligned_cols=166 Identities=19% Similarity=0.139 Sum_probs=113.3
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025211 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+.+...+..++..++.. .++.+|||+|||+|..++.++..+. +++.|+|+|+++.+++.+++|+..++
T Consensus 229 ~G~~~~qd~~s~lv~~~l~~------~~g~~VLDlgaG~G~~t~~la~~~~---~~~~v~avDi~~~~l~~~~~n~~~~g 299 (444)
T PRK14902 229 DGLITIQDESSMLVAPALDP------KGGDTVLDACAAPGGKTTHIAELLK---NTGKVVALDIHEHKLKLIEENAKRLG 299 (444)
T ss_pred CceEEEEChHHHHHHHHhCC------CCCCEEEEeCCCCCHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 34455555544444443332 4678999999999999999888742 45699999999999999999999998
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeEE
Q 025211 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l 169 (256)
+.. +++++|+.+....+ .++||+|++|||+..... ....+...|....... .....++..+.++|||||++
T Consensus 300 ~~~v~~~~~D~~~~~~~~-~~~fD~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~l 375 (444)
T PRK14902 300 LTNIETKALDARKVHEKF-AEKFDKILVDAPCSGLGV---IRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGIL 375 (444)
T ss_pred CCeEEEEeCCcccccchh-cccCCEEEEcCCCCCCee---eccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 865 88999987754332 368999999999763321 1222333332221111 13457899999999999999
Q ss_pred EEEEeCCCC---HHHHHHHHHHc-CCcE
Q 025211 170 YLVTLTAND---PSQICLQMMEK-GYAA 193 (256)
Q Consensus 170 ~~~~~~~~~---~~~~~~~~~~~-g~~~ 193 (256)
++++++... ...+...++++ .|+.
T Consensus 376 vystcs~~~~Ene~vv~~~l~~~~~~~~ 403 (444)
T PRK14902 376 VYSTCTIEKEENEEVIEAFLEEHPEFEL 403 (444)
T ss_pred EEEcCCCChhhhHHHHHHHHHhCCCcEE
Confidence 988776532 23445555554 3543
No 45
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.68 E-value=1.6e-15 Score=143.27 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=113.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCCccE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++|||+|||+|.+++.++.. + ...|+++|+|+.+++.|++|+..|++. .+++++|+.+.+... ..+||+
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~----G-a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-~~~fDl 611 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG----G-AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-REQFDL 611 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC----C-CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-CCCcCE
Confidence 5789999999999999988874 2 236999999999999999999999985 389999998876443 568999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
|++||||+....... ..+ .....+..++..+.++|+|||++++.++... .....+.+.+.|+....+..
T Consensus 612 IilDPP~f~~~~~~~------~~~----~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~-~~~~~~~~~~~g~~~~~i~~ 680 (702)
T PRK11783 612 IFIDPPTFSNSKRME------DSF----DVQRDHVALIKDAKRLLRPGGTLYFSNNKRG-FKMDEEGLAKLGLKAEEITA 680 (702)
T ss_pred EEECCCCCCCCCccc------hhh----hHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc-CChhHHHHHhCCCeEEEEec
Confidence 999999986533200 000 1123467889999999999999988665443 34447778888999888877
Q ss_pred cCCCCccE
Q 025211 199 RSTEEENL 206 (256)
Q Consensus 199 ~~~~~~~~ 206 (256)
...+.++.
T Consensus 681 ~~~~~Dhp 688 (702)
T PRK11783 681 KTLPPDFA 688 (702)
T ss_pred CCCCCCCC
Confidence 66665553
No 46
>PLN02244 tocopherol O-methyltransferase
Probab=99.68 E-value=3.4e-15 Score=130.01 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=86.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. + +++|+|+|+++.+++.++++....++. .+++.+|+.+. ++.+++||+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~----~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~--~~~~~~FD~ 189 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARK----Y-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ--PFEDGQFDL 189 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC--CCCCCCccE
Confidence 56789999999999998887775 3 569999999999999999998887764 38999998765 344689999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-.+.+.++ ...+++++.++|||||++++++.
T Consensus 190 V~s~~~~~h~~d---------------------~~~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 190 VWSMESGEHMPD---------------------KRKFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred EEECCchhccCC---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 999755444332 46789999999999999998653
No 47
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.67 E-value=2.8e-15 Score=125.71 Aligned_cols=106 Identities=21% Similarity=0.286 Sum_probs=85.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +.+|+|+|+++++++.|+++....++. .+++++|+.+.. +..+++||+
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~-~~~~~~fD~ 115 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA-QHLETPVDL 115 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh-hhcCCCCCE
Confidence 45689999999999998877765 458999999999999999999888764 388999987753 234578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++.++.+..+ ...++..+.++|||||+++++..
T Consensus 116 V~~~~vl~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 116 ILFHAVLEWVAD---------------------PKSVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred EEehhHHHhhCC---------------------HHHHHHHHHHHcCCCeEEEEEEE
Confidence 999766543322 35789999999999999987643
No 48
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.67 E-value=7.7e-15 Score=122.59 Aligned_cols=133 Identities=24% Similarity=0.306 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
+..+++.+.... .++.+|||+|||+|.+++.+++. +. ..|+|+|+++.+++.|++|+..+++...+...+
T Consensus 106 t~~~l~~l~~~~-----~~~~~VLDiGcGsG~l~i~~~~~----g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~ 175 (250)
T PRK00517 106 TRLCLEALEKLV-----LPGKTVLDVGCGSGILAIAAAKL----GA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQ 175 (250)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEeCCcHHHHHHHHHHc----CC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEcc
Confidence 555556555442 47899999999999988766554 33 269999999999999999999888743221110
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
.+.+||+|++|... .....++..+.++|||||++++.........++.
T Consensus 176 --------~~~~fD~Vvani~~------------------------~~~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~ 223 (250)
T PRK00517 176 --------GDLKADVIVANILA------------------------NPLLELAPDLARLLKPGGRLILSGILEEQADEVL 223 (250)
T ss_pred --------CCCCcCEEEEcCcH------------------------HHHHHHHHHHHHhcCCCcEEEEEECcHhhHHHHH
Confidence 01279999997431 2356788999999999999999766666677889
Q ss_pred HHHHHcCCcEEEEEe
Q 025211 184 LQMMEKGYAARIVVQ 198 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~ 198 (256)
..+.+.||.......
T Consensus 224 ~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 224 EAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHCCCEEEEEEE
Confidence 999999998765544
No 49
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.67 E-value=1.5e-14 Score=116.71 Aligned_cols=127 Identities=17% Similarity=0.293 Sum_probs=100.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cc-eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++.+ .++.+|+++|+++.+++.+++|+..+++ .. .++.+|..+.... ..++||.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~---~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-~~~~~D~ 114 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLV---GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-INEKFDR 114 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHh---CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh-cCCCCCE
Confidence 578999999999999999888764 2456899999999999999999998884 33 7888888765433 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+++... .....+++.+.+.|+|||++++.........++...+++.||....
T Consensus 115 V~~~~~~------------------------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~~~~~ 167 (198)
T PRK00377 115 IFIGGGS------------------------EKLKEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGFNLEI 167 (198)
T ss_pred EEECCCc------------------------ccHHHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCCCeEE
Confidence 9995321 1256889999999999999998666555667888888888986543
No 50
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.66 E-value=9.7e-16 Score=123.31 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=83.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.+++.+++. ++.|+|+|+++.+++.++++...++++..+...|+.... .+++||+|++
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~---~~~~fD~I~~ 100 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLA------GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA---LNEDYDFIFS 100 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc---ccCCCCEEEE
Confidence 5689999999999998888764 468999999999999999998887776677777765432 1357999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.++++.+.. ....+++.+.++|+|||+++++.
T Consensus 101 ~~~~~~~~~~-------------------~~~~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 101 TVVFMFLQAG-------------------RVPEIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred ecccccCCHH-------------------HHHHHHHHHHHHhCCCcEEEEEE
Confidence 9887654322 25788999999999999966653
No 51
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.66 E-value=4.3e-15 Score=119.27 Aligned_cols=124 Identities=14% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eE
Q 025211 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DL 99 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~ 99 (256)
|+.++.+.+.+++.+... .++.+|||+|||+|.++++++.. . ..+|+++|+++.+++.+++|++.+++.. .+
T Consensus 34 Rp~~d~v~e~l~~~l~~~--~~~~~vLDl~~GsG~l~l~~lsr----~-a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~ 106 (199)
T PRK10909 34 RPTTDRVRETLFNWLAPV--IVDARCLDCFAGSGALGLEALSR----Y-AAGATLLEMDRAVAQQLIKNLATLKAGNARV 106 (199)
T ss_pred CcCCHHHHHHHHHHHhhh--cCCCEEEEcCCCccHHHHHHHHc----C-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEE
Confidence 444566666665554321 35689999999999999865443 2 2489999999999999999999998754 89
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhh--ccccCeEEEEEEe
Q 025211 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADK--LLSKRGWLYLVTL 174 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~LkpgG~l~~~~~ 174 (256)
+++|+.+.+.. ...+||+|++||||... ....+++.+.. +|+|+|++++.+.
T Consensus 107 ~~~D~~~~l~~-~~~~fDlV~~DPPy~~g----------------------~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 107 VNTNALSFLAQ-PGTPHNVVFVDPPFRKG----------------------LLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred EEchHHHHHhh-cCCCceEEEECCCCCCC----------------------hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 99999876532 23579999999998521 13444555443 4899999998554
No 52
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.66 E-value=3.1e-14 Score=122.83 Aligned_cols=148 Identities=14% Similarity=0.125 Sum_probs=108.6
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE
Q 025211 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL 99 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~ 99 (256)
|...++.+.+.+++.... ..++.+|||+|||+|.+++.+++. .++.+++++|+++++++.|+++.... ..++
T Consensus 93 ~~~~~e~~r~~~l~~~~l--~~~~~~VLDLGcGtG~~~l~La~~----~~~~~VtgVD~S~~mL~~A~~k~~~~--~i~~ 164 (340)
T PLN02490 93 PGHWTEDMRDDALEPADL--SDRNLKVVDVGGGTGFTTLGIVKH----VDAKNVTILDQSPHQLAKAKQKEPLK--ECKI 164 (340)
T ss_pred cCcchHHHHHHHHhhccc--CCCCCEEEEEecCCcHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhhhcc--CCeE
Confidence 444455666655554321 246789999999999988877776 44568999999999999999876422 2378
Q ss_pred EEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC----
Q 025211 100 INTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---- 175 (256)
Q Consensus 100 ~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---- 175 (256)
+.+|+.+. ++.+++||+|+++..+.+.++ ...+++++.++|+|||+++++.+.
T Consensus 165 i~gD~e~l--p~~~~sFDvVIs~~~L~~~~d---------------------~~~~L~e~~rvLkPGG~LvIi~~~~p~~ 221 (340)
T PLN02490 165 IEGDAEDL--PFPTDYADRYVSAGSIEYWPD---------------------PQRGIKEAYRVLKIGGKACLIGPVHPTF 221 (340)
T ss_pred EeccHHhC--CCCCCceeEEEEcChhhhCCC---------------------HHHHHHHHHHhcCCCcEEEEEEecCcch
Confidence 88998765 334578999999876654332 357899999999999999886532
Q ss_pred ------------CCCHHHHHHHHHHcCCcEEEEEe
Q 025211 176 ------------ANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ------------~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....+++.+++++.||+.+.+..
T Consensus 222 ~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i~~ 256 (340)
T PLN02490 222 WLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKLKR 256 (340)
T ss_pred hHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence 12457888999999999766554
No 53
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.66 E-value=5.4e-15 Score=125.57 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=115.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025211 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
++.|.+-.-.++..+.+. .. .++|..|||+.||||.+++++..+ |+.++|+|++..|++-|+.|+...++.
T Consensus 175 f~~p~s~~P~lAR~mVNL-a~--v~~G~~vlDPFcGTGgiLiEagl~------G~~viG~Did~~mv~gak~Nl~~y~i~ 245 (347)
T COG1041 175 FFRPGSMDPRLARAMVNL-AR--VKRGELVLDPFCGTGGILIEAGLM------GARVIGSDIDERMVRGAKINLEYYGIE 245 (347)
T ss_pred ccCcCCcCHHHHHHHHHH-hc--cccCCEeecCcCCccHHHHhhhhc------CceEeecchHHHHHhhhhhhhhhhCcC
Confidence 555654444555555543 22 258899999999999999998877 679999999999999999999988866
Q ss_pred c-eEEEc-chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 97 A-DLINT-DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 ~-~~~~~-d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
. .+... |+.... +.+.++|.|+++|||......... .-...+..+++.+.++|++||++++..+
T Consensus 246 ~~~~~~~~Da~~lp--l~~~~vdaIatDPPYGrst~~~~~------------~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 246 DYPVLKVLDATNLP--LRDNSVDAIATDPPYGRSTKIKGE------------GLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ceeEEEecccccCC--CCCCccceEEecCCCCcccccccc------------cHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 45555 877763 444579999999999876643211 1124578999999999999999999765
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEEecC
Q 025211 175 TANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
......+.+.+|++...+...
T Consensus 312 -----~~~~~~~~~~~f~v~~~~~~~ 332 (347)
T COG1041 312 -----RDPRHELEELGFKVLGRFTMR 332 (347)
T ss_pred -----CcchhhHhhcCceEEEEEEEe
Confidence 234556677889876655443
No 54
>PHA03412 putative methyltransferase; Provisional
Probab=99.66 E-value=2.5e-15 Score=121.96 Aligned_cols=129 Identities=14% Similarity=0.236 Sum_probs=89.8
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025211 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
...+|+|.+....++ ... ..+.+|||+|||+|.+++.++..+.. .+...|+|+|+++.+++.|++|..
T Consensus 30 ~GqFfTP~~iAr~~~---i~~------~~~grVLDlG~GSG~Lalala~~~~~-~~~~~V~aVEID~~Al~~Ar~n~~-- 97 (241)
T PHA03412 30 LGAFFTPIGLARDFT---IDA------CTSGSVVDLCAGIGGLSFAMVHMMMY-AKPREIVCVELNHTYYKLGKRIVP-- 97 (241)
T ss_pred CCccCCCHHHHHHHH---Hhc------cCCCEEEEccChHHHHHHHHHHhccc-CCCcEEEEEECCHHHHHHHHhhcc--
Confidence 355888865433322 111 24689999999999999988876431 135689999999999999998753
Q ss_pred CCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025211 94 NVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
...++++|+.... .+++||+||+||||+....... .+...+......++..+.+++++|+.
T Consensus 98 --~~~~~~~D~~~~~---~~~~FDlIIsNPPY~~~~~~d~---------~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 98 --EATWINADALTTE---FDTLFDMAISNPPFGKIKTSDF---------KGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred --CCEEEEcchhccc---ccCCccEEEECCCCCCcccccc---------CCcccccHHHHHHHHHHHHHcCCCEE
Confidence 2488889987642 2468999999999997543110 11122445677889999886666664
No 55
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.66 E-value=5.8e-15 Score=124.20 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=109.0
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025211 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
.|.+...+..++..++. .+++.+|||+|||+|..++.++..+. ....|+++|+++.+++.+++|+.++++.
T Consensus 52 ~~~~qd~~s~~~~~~l~------~~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~~l~~~~~n~~~~g~~ 122 (264)
T TIGR00446 52 LYYIQEASSMIPPLALE------PDPPERVLDMAAAPGGKTTQISALMK---NEGAIVANEFSKSRTKVLIANINRCGVL 122 (264)
T ss_pred eEEEECHHHHHHHHHhC------CCCcCEEEEECCCchHHHHHHHHHcC---CCCEEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 34555445555544443 25789999999999999999888754 2358999999999999999999999876
Q ss_pred c-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEE
Q 025211 97 A-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 ~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+ .+++.|...... ..+.||.|++|||+.... ...+.+...|.-.... ......+|..+.++|||||++++
T Consensus 123 ~v~~~~~D~~~~~~--~~~~fD~Vl~D~Pcsg~G---~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvY 197 (264)
T TIGR00446 123 NVAVTNFDGRVFGA--AVPKFDAILLDAPCSGEG---VIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVY 197 (264)
T ss_pred cEEEecCCHHHhhh--hccCCCEEEEcCCCCCCc---ccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 5 888889766432 235699999999986322 2222333322111111 11355789999999999999999
Q ss_pred EEeCCCCH--HHHHHHHHH
Q 025211 172 VTLTANDP--SQICLQMME 188 (256)
Q Consensus 172 ~~~~~~~~--~~~~~~~~~ 188 (256)
++++.... +++.+.+.+
T Consensus 198 stcs~~~~Ene~vv~~~l~ 216 (264)
T TIGR00446 198 STCSLEPEENEAVVDYLLE 216 (264)
T ss_pred EeCCCChHHHHHHHHHHHH
Confidence 98876643 334444433
No 56
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.65 E-value=5.3e-15 Score=127.05 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=96.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..+++. +++|+|+|+++++++.|+++....+. ...++++|+.+.. ..+++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~--~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA--DEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh--hccCCCCE
Confidence 35679999999999988777653 56999999999999999988766554 3488899987652 23578999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------------- 176 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------------- 176 (256)
|++.-.+.+..+ ...+++.+.++|||||.+++.+...
T Consensus 202 Vi~~~vLeHv~d---------------------~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~g 260 (322)
T PLN02396 202 VLSLEVIEHVAN---------------------PAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKG 260 (322)
T ss_pred EEEhhHHHhcCC---------------------HHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCC
Confidence 999655444333 4688999999999999999875321
Q ss_pred -------CCHHHHHHHHHHcCCcEEEE
Q 025211 177 -------NDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 -------~~~~~~~~~~~~~g~~~~~~ 196 (256)
-..+++.+.+++.||+...+
T Consensus 261 th~~~~f~tp~eL~~lL~~aGf~i~~~ 287 (322)
T PLN02396 261 THQWSSFVTPEELSMILQRASVDVKEM 287 (322)
T ss_pred CcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence 12467777888888876544
No 57
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.9e-14 Score=111.76 Aligned_cols=124 Identities=20% Similarity=0.307 Sum_probs=94.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+|+|||||.+++.++.+ ++ ..|+|+|+++++++.+++|..+..-...++.+|+.+. ...+|.++
T Consensus 44 l~g~~V~DlG~GTG~La~ga~~l----Ga-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~-----~~~~dtvi 113 (198)
T COG2263 44 LEGKTVLDLGAGTGILAIGAALL----GA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF-----RGKFDTVI 113 (198)
T ss_pred cCCCEEEEcCCCcCHHHHHHHhc----CC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc-----CCccceEE
Confidence 47889999999999999988876 44 4899999999999999999998665669999999876 46799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
.||||...... ++ ..+++++++.+ -+++- .+.....+.+.+.....|+.+...+
T Consensus 114 mNPPFG~~~rh------aD---------r~Fl~~Ale~s-------~vVYs-iH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 114 MNPPFGSQRRH------AD---------RPFLLKALEIS-------DVVYS-IHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred ECCCCcccccc------CC---------HHHHHHHHHhh-------heEEE-eeccccHHHHHHHHHhcCCeEEEEE
Confidence 99999754221 12 23455666554 23444 3445567888999999998776554
No 58
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.65 E-value=5.8e-15 Score=117.00 Aligned_cols=156 Identities=26% Similarity=0.337 Sum_probs=102.5
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH
Q 025211 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
..|.+-.+.++..++..-.. +++..|||+.||+|.++++.+.+.....| ...++|+|+++++++.|++|+..
T Consensus 7 ~~~a~L~~~lA~~ll~la~~---~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ 83 (179)
T PF01170_consen 7 FGPAPLRPTLAAALLNLAGW---RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKA 83 (179)
T ss_dssp SSSTSS-HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhCC---CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHh
Confidence 44555567777777765432 57889999999999999999988443221 11399999999999999999998
Q ss_pred cCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 93 HNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.++.. .+.++|+.+.. ...+++|.|++||||........ .....+..+++.+.++|++ ..++
T Consensus 84 ag~~~~i~~~~~D~~~l~--~~~~~~d~IvtnPPyG~r~~~~~-------------~~~~ly~~~~~~~~~~l~~-~~v~ 147 (179)
T PF01170_consen 84 AGVEDYIDFIQWDARELP--LPDGSVDAIVTNPPYGRRLGSKK-------------DLEKLYRQFLRELKRVLKP-RAVF 147 (179)
T ss_dssp TT-CGGEEEEE--GGGGG--GTTSBSCEEEEE--STTSHCHHH-------------HHHHHHHHHHHHHHCHSTT-CEEE
T ss_pred cccCCceEEEecchhhcc--cccCCCCEEEECcchhhhccCHH-------------HHHHHHHHHHHHHHHHCCC-CEEE
Confidence 88765 78888988874 34579999999999975433210 0134578889999999999 4444
Q ss_pred EEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025211 171 LVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+ +.... .+.+.+...++.....
T Consensus 148 l-~~~~~---~~~~~~~~~~~~~~~~ 169 (179)
T PF01170_consen 148 L-TTSNR---ELEKALGLKGWRKRKL 169 (179)
T ss_dssp E-EESCC---CHHHHHTSTTSEEEEE
T ss_pred E-EECCH---HHHHHhcchhhceEEE
Confidence 4 33332 3456666656554433
No 59
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=2.2e-15 Score=125.68 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=87.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+|+.|++.|++++...+.. .+++++|+.+... ..+|+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~--~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~----~~~D~ 128 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIH--HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----ENASM 128 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----CCCCE
Confidence 4678999999999998877776433 47889999999999999999999887664 4889999876521 35999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|||||.+++...
T Consensus 129 vv~~~~l~~l~~~-------------------~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 129 VVLNFTLQFLEPS-------------------ERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EehhhHHHhCCHH-------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 9998766544322 146889999999999999999764
No 60
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.65 E-value=1.1e-14 Score=130.72 Aligned_cols=167 Identities=14% Similarity=0.193 Sum_probs=114.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhh--hcCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEK--RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~--~~~~~fD 117 (256)
.++.+|||+|||+|..++.++..+. +.+.|+++|+++.+++.+++|+..+|+.+ .++++|+.+.... ...++||
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~---~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD 327 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMG---DQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFD 327 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhC---CCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCC
Confidence 5789999999999999998888753 34589999999999999999999999865 8889998765321 2246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc-
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK- 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~- 189 (256)
.|++|+|...... ..+.+...|.-.... ......++..+.++|||||++++++++.. ....+...++++
T Consensus 328 ~Vl~DaPCSg~G~---~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~ 404 (434)
T PRK14901 328 RILLDAPCSGLGT---LHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHP 404 (434)
T ss_pred EEEEeCCCCcccc---cccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCC
Confidence 9999999653221 112222222111100 11356889999999999999999887663 233556666665
Q ss_pred CCcEEE----EEecCCCCccEEEEEEEe
Q 025211 190 GYAARI----VVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 190 g~~~~~----~~~~~~~~~~~~l~~~~~ 213 (256)
+|.... +++..+..+.+|+-..+|
T Consensus 405 ~~~~~~~~~~~~P~~~~~dGfF~a~l~k 432 (434)
T PRK14901 405 DWKLEPPKQKIWPHRQDGDGFFMAVLRK 432 (434)
T ss_pred CcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence 465332 233333445556555554
No 61
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.65 E-value=9.7e-15 Score=124.37 Aligned_cols=133 Identities=23% Similarity=0.373 Sum_probs=98.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
+.++.+++.... .++.+|||+|||+|.+++.+++. + ..+|+|+|+++.+++.|++|+..+++.. .+..
T Consensus 146 t~l~l~~l~~~~-----~~g~~VLDvGcGsG~lai~aa~~----g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~ 215 (288)
T TIGR00406 146 TSLCLEWLEDLD-----LKDKNVIDVGCGSGILSIAALKL----G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL 215 (288)
T ss_pred HHHHHHHHHhhc-----CCCCEEEEeCCChhHHHHHHHHc----C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe
Confidence 445445444332 46799999999999998877654 2 3489999999999999999999988764 4455
Q ss_pred cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025211 102 TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 102 ~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.+... ..+++||+|++|... ..+..++..+.++|||||+++++........+
T Consensus 216 ~~~~~----~~~~~fDlVvan~~~------------------------~~l~~ll~~~~~~LkpgG~li~sgi~~~~~~~ 267 (288)
T TIGR00406 216 IYLEQ----PIEGKADVIVANILA------------------------EVIKELYPQFSRLVKPGGWLILSGILETQAQS 267 (288)
T ss_pred ccccc----ccCCCceEEEEecCH------------------------HHHHHHHHHHHHHcCCCcEEEEEeCcHhHHHH
Confidence 54322 224689999998531 22567889999999999999997766666677
Q ss_pred HHHHHHHcCCcEEE
Q 025211 182 ICLQMMEKGYAARI 195 (256)
Q Consensus 182 ~~~~~~~~g~~~~~ 195 (256)
+.+.+.+. |....
T Consensus 268 v~~~~~~~-f~~~~ 280 (288)
T TIGR00406 268 VCDAYEQG-FTVVE 280 (288)
T ss_pred HHHHHHcc-Cceee
Confidence 88888765 76544
No 62
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.64 E-value=2.4e-14 Score=129.05 Aligned_cols=164 Identities=18% Similarity=0.145 Sum_probs=112.8
Q ss_pred cCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025211 14 HPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 14 ~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
.++.+.....+..++..++.. .++.+|||+|||+|..+..++..+. .++.|+|+|+++.+++.+++++...
T Consensus 228 ~~G~~~vqd~~s~l~~~~l~~------~~g~~VLDlgaG~G~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~ 298 (445)
T PRK14904 228 KLGLVSVQNPTQALACLLLNP------QPGSTVLDLCAAPGGKSTFMAELMQ---NRGQITAVDRYPQKLEKIRSHASAL 298 (445)
T ss_pred hCcEEEEeCHHHHHHHHhcCC------CCCCEEEEECCCCCHHHHHHHHHhC---CCcEEEEEECCHHHHHHHHHHHHHh
Confidence 344455554455554444432 4778999999999999988887653 2458999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH----HHHHHHHHHHhhccccCeE
Q 025211 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR----AVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~ 168 (256)
++.. +++++|+.+... +++||+|+++||+.....- .+.++..|....... .....++..+.++|||||+
T Consensus 299 g~~~v~~~~~Da~~~~~---~~~fD~Vl~D~Pcsg~g~~---~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~ 372 (445)
T PRK14904 299 GITIIETIEGDARSFSP---EEQPDAILLDAPCTGTGVL---GRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGV 372 (445)
T ss_pred CCCeEEEEeCccccccc---CCCCCEEEEcCCCCCcchh---hcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcE
Confidence 8865 889999876532 3689999999997543221 122222222111111 1345789999999999999
Q ss_pred EEEEEeCCCCH---HHHHHHHHHc-CCc
Q 025211 169 LYLVTLTANDP---SQICLQMMEK-GYA 192 (256)
Q Consensus 169 l~~~~~~~~~~---~~~~~~~~~~-g~~ 192 (256)
+++.+++.... ..+..+++.+ +|.
T Consensus 373 lvystcs~~~~Ene~~v~~~l~~~~~~~ 400 (445)
T PRK14904 373 LVYATCSIEPEENELQIEAFLQRHPEFS 400 (445)
T ss_pred EEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence 99999877532 3445566554 344
No 63
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.64 E-value=1.6e-14 Score=122.22 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=99.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.+++.. .+..+|+|+|+++.+++.|+++....+... +++.+|+.+. ++.+++||+|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~---g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l--~~~~~~fD~V 150 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRV---GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEAL--PVADNSVDVI 150 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh---CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhC--CCCCCceeEE
Confidence 478999999999999877666653 345689999999999999999998877654 8888998764 2335789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC----------------------C
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA----------------------N 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~----------------------~ 177 (256)
+++..++..++ ...+++++.++|||||++++..... .
T Consensus 151 i~~~v~~~~~d---------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (272)
T PRK11873 151 ISNCVINLSPD---------------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCVAGAL 209 (272)
T ss_pred EEcCcccCCCC---------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccccCCC
Confidence 99876654332 3578999999999999999854211 1
Q ss_pred CHHHHHHHHHHcCCcEEEE
Q 025211 178 DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~ 196 (256)
...++.+++++.||....+
T Consensus 210 ~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 210 QEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred CHHHHHHHHHHCCCCceEE
Confidence 2346677777778776544
No 64
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.63 E-value=1e-15 Score=110.07 Aligned_cols=100 Identities=22% Similarity=0.387 Sum_probs=76.0
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC-CC
Q 025211 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN-PP 124 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n-pP 124 (256)
|||+|||+|..+..++..+ .+.+..+++|+|++++|++.++++....+.+.+++++|+.+.. ...++||+|++. ..
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~--~~~~~~D~v~~~~~~ 77 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP--FSDGKFDLVVCSGLS 77 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH--HHSSSEEEEEE-TTG
T ss_pred CEEeecCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc--ccCCCeeEEEEcCCc
Confidence 7999999999999998886 3335579999999999999999999887777799999998853 346799999993 32
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
+.+.++ .....+++.+.++|+|||
T Consensus 78 ~~~~~~-------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 78 LHHLSP-------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGGSSH-------------------HHHHHHHHHHHHTEEEEE
T ss_pred cCCCCH-------------------HHHHHHHHHHHHHhCCCC
Confidence 333222 237899999999999998
No 65
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.63 E-value=2.1e-14 Score=106.64 Aligned_cols=117 Identities=19% Similarity=0.221 Sum_probs=89.2
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..+++. .++.+++++|+++.+++.+++++..++... .++.+|
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vldlG~G~G~~~~~l~~~----~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~ 77 (124)
T TIGR02469 5 REVRALTLSKLR---LRPGDVLWDIGAGSGSITIEAARL----VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD 77 (124)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc
Confidence 444555555543 245679999999999999888876 566799999999999999999998887654 788888
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+...... ...+||+|++..+. .....+++.+.+.|+|||++++..
T Consensus 78 ~~~~~~~-~~~~~D~v~~~~~~------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 78 APEALED-SLPEPDRVFIGGSG------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ccccChh-hcCCCCEEEECCcc------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 7643222 23689999995421 114688999999999999999853
No 66
>PRK04266 fibrillarin; Provisional
Probab=99.63 E-value=9.3e-14 Score=113.88 Aligned_cols=146 Identities=17% Similarity=0.158 Sum_probs=97.5
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+...++..+..+...++.+|||+|||+|.++..++... +...|+|+|+++.|++.+.+++... .+..++.+|+.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v----~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~ 130 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIV----EEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADAR 130 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCC
Confidence 334444443311233678999999999999999888874 3458999999999999887776543 22377888876
Q ss_pred hchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe------CCC-
Q 025211 106 SGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL------TAN- 177 (256)
Q Consensus 106 ~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------~~~- 177 (256)
+... ....++||+|+++.+.. .....+++.+.++|||||+++++.+ ...
T Consensus 131 ~~~~~~~l~~~~D~i~~d~~~p-----------------------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~ 187 (226)
T PRK04266 131 KPERYAHVVEKVDVIYQDVAQP-----------------------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP 187 (226)
T ss_pred CcchhhhccccCCEEEECCCCh-----------------------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH
Confidence 5311 11235699999864310 0124568899999999999999422 111
Q ss_pred --CHHHHHHHHHHcCCcEEEEEec
Q 025211 178 --DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 178 --~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
...+..+.+++.||+.......
T Consensus 188 ~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 188 KEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEcC
Confidence 1123568888899997766543
No 67
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.63 E-value=7.4e-14 Score=112.51 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
......++..+. ..++.+|||+|||+|.+++.++.. .++..|+++|+++++++.+++|+..++... +++.+|
T Consensus 26 ~~v~~~l~~~l~---~~~~~~VLDiG~G~G~~~~~la~~----~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d 98 (196)
T PRK07402 26 REVRLLLISQLR---LEPDSVLWDIGAGTGTIPVEAGLL----CPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS 98 (196)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHH----CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence 333334455443 246789999999999999888765 566799999999999999999999888754 888899
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHH
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQIC 183 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~ 183 (256)
+.+.... ....+|.++.+.. .....+++.+.++|+|||++++.........++.
T Consensus 99 ~~~~~~~-~~~~~d~v~~~~~-------------------------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 152 (196)
T PRK07402 99 APECLAQ-LAPAPDRVCIEGG-------------------------RPIKEILQAVWQYLKPGGRLVATASSLEGLYAIS 152 (196)
T ss_pred hHHHHhh-CCCCCCEEEEECC-------------------------cCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHH
Confidence 8664322 1234677665311 0146889999999999999999776554444555
Q ss_pred HHHHHc
Q 025211 184 LQMMEK 189 (256)
Q Consensus 184 ~~~~~~ 189 (256)
+.+...
T Consensus 153 ~~~~~~ 158 (196)
T PRK07402 153 EGLAQL 158 (196)
T ss_pred HHHHhc
Confidence 666554
No 68
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.63 E-value=9.6e-15 Score=127.23 Aligned_cols=130 Identities=22% Similarity=0.195 Sum_probs=102.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+..+||||||+|.+++.+|.. .|+..++|+|+++.+++.|.+++..+++.+ .++++|+......+.++++|.|
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~----~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I 196 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKN----NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKI 196 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHh----CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEE
Confidence 35679999999999999988887 788999999999999999999999988876 8999998776545557899999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
+++.|... +... ++ +.....++..+.++|+|||.+.+.+............+.+.
T Consensus 197 ~lnFPdPW-~Kkr------HR--------Rlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPW-DKKP------HR--------RVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCc-cccc------hh--------hccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 99876321 1100 01 12357899999999999999999887666556666666555
No 69
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.62 E-value=3.2e-14 Score=122.77 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=105.9
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|. +++.... .+.+++.+.+.+.. .++.+|||+|||+|.+++.++.. +..|+|+|+++.+++.|++
T Consensus 143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~---~~~~~VLDl~cG~G~~sl~la~~------~~~V~gvD~s~~av~~A~~ 213 (315)
T PRK03522 143 LFIRPQSFFQTNPAVAAQLYATARDWVRE---LPPRSMWDLFCGVGGFGLHCATP------GMQLTGIEISAEAIACAKQ 213 (315)
T ss_pred EEECCCeeeecCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCCCHHHHHHHhc------CCEEEEEeCCHHHHHHHHH
Confidence 344555 4444433 55666666555432 35689999999999999888874 4589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025211 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
|+..++++. +++++|+.+.... ..+.||+|++|||..-. ...+++.+ ..++|++
T Consensus 214 n~~~~~l~~v~~~~~D~~~~~~~-~~~~~D~Vv~dPPr~G~-----------------------~~~~~~~l-~~~~~~~ 268 (315)
T PRK03522 214 SAAELGLTNVQFQALDSTQFATA-QGEVPDLVLVNPPRRGI-----------------------GKELCDYL-SQMAPRF 268 (315)
T ss_pred HHHHcCCCceEEEEcCHHHHHHh-cCCCCeEEEECCCCCCc-----------------------cHHHHHHH-HHcCCCe
Confidence 999999864 9999999876532 23579999999995310 12333333 3368888
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025211 168 WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++.+.....++... .||+...+.
T Consensus 269 ivyvsc~p~t~~rd~~~l---~~y~~~~~~ 295 (315)
T PRK03522 269 ILYSSCNAQTMAKDLAHL---PGYRIERVQ 295 (315)
T ss_pred EEEEECCcccchhHHhhc---cCcEEEEEE
Confidence 888877666666666554 478776654
No 70
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.62 E-value=1.4e-14 Score=121.19 Aligned_cols=126 Identities=19% Similarity=0.197 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
...++.+++.+. ..++.+|||+|||+|.++..++.. +..++++|+++.+++.++++.. ...++++|+
T Consensus 28 ~~~a~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~------~~~v~~~D~s~~~l~~a~~~~~----~~~~~~~d~ 94 (251)
T PRK10258 28 RQSADALLAMLP---QRKFTHVLDAGCGPGWMSRYWRER------GSQVTALDLSPPMLAQARQKDA----ADHYLAGDI 94 (251)
T ss_pred HHHHHHHHHhcC---ccCCCeEEEeeCCCCHHHHHHHHc------CCeEEEEECCHHHHHHHHhhCC----CCCEEEcCc
Confidence 444455555543 245789999999999987666543 4689999999999999988642 236788888
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHH
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICL 184 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~ 184 (256)
.+. ++.+++||+|+++.++...++ ...++.++.++|+|||.+++++.......++..
T Consensus 95 ~~~--~~~~~~fD~V~s~~~l~~~~d---------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~ 151 (251)
T PRK10258 95 ESL--PLATATFDLAWSNLAVQWCGN---------------------LSTALRELYRVVRPGGVVAFTTLVQGSLPELHQ 151 (251)
T ss_pred ccC--cCCCCcEEEEEECchhhhcCC---------------------HHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHH
Confidence 764 334578999999877653322 468899999999999999998765544444444
Q ss_pred HH
Q 025211 185 QM 186 (256)
Q Consensus 185 ~~ 186 (256)
.+
T Consensus 152 ~~ 153 (251)
T PRK10258 152 AW 153 (251)
T ss_pred HH
Confidence 33
No 71
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.62 E-value=2.1e-14 Score=120.79 Aligned_cols=130 Identities=14% Similarity=0.117 Sum_probs=91.1
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025211 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+-++.+.|.-. .-.+.++..+. ..++.+|||+|||+|..+..++.. . +++|+|+|+++.+++.|+++...
T Consensus 28 ~g~~~~~~gg~--~~~~~~l~~l~---l~~~~~VLDiGcG~G~~a~~la~~----~-~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 28 FGEDYISSGGI--EATTKILSDIE---LNENSKVLDIGSGLGGGCKYINEK----Y-GAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred hCCCCCCCCch--HHHHHHHHhCC---CCCCCEEEEEcCCCChhhHHHHhh----c-CCEEEEEECCHHHHHHHHHHcCc
Confidence 33455555432 11344444432 257899999999999987776653 2 56999999999999999987653
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
.....+..+|+.+. ++.+++||+|++...+.+.+. .....+++++.++|||||++++.
T Consensus 98 -~~~i~~~~~D~~~~--~~~~~~FD~V~s~~~l~h~~~-------------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 98 -KNKIEFEANDILKK--DFPENTFDMIYSRDAILHLSY-------------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred -CCceEEEECCcccC--CCCCCCeEEEEEhhhHHhCCH-------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 22347888888654 334578999999654433221 12578899999999999999987
Q ss_pred Ee
Q 025211 173 TL 174 (256)
Q Consensus 173 ~~ 174 (256)
..
T Consensus 156 d~ 157 (263)
T PTZ00098 156 DY 157 (263)
T ss_pred Ee
Confidence 64
No 72
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.62 E-value=6e-15 Score=123.65 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .|+++|+|+|+++.|++.|+++ ..+++++|+.+.. ..++||+|+
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~----~p~~~v~gvD~s~~~~~~a~~~------~~~~~~~d~~~~~---~~~~fD~v~ 94 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARR----WPGAVIEALDSSPEMVAAARER------GVDARTGDVRDWK---PKPDTDVVV 94 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHhc------CCcEEEcChhhCC---CCCCceEEE
Confidence 57799999999999998877776 6778999999999999998763 2478889987652 246899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
++..+++.++ ...++.++.+.|||||++++..
T Consensus 95 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 95 SNAALQWVPE---------------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred EehhhhhCCC---------------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 9988765543 4678999999999999999864
No 73
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.61 E-value=2.6e-14 Score=118.64 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..+++.+. .|+++++|+|+++.|++.|++++...+. ..+++++|+.+... ..+|+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~--~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~d~ 125 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN--QPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----KNASM 125 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC--CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC----CCCCE
Confidence 4678999999999999888877643 4678999999999999999999876553 34889999877532 35899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++..+++.+.. ....+++++.+.|+|||.+++..+
T Consensus 126 v~~~~~l~~~~~~-------------------~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 126 VILNFTLQFLPPE-------------------DRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred EeeecchhhCCHH-------------------HHHHHHHHHHHhcCCCeEEEEeec
Confidence 9997665443321 146889999999999999999764
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.61 E-value=8.1e-14 Score=124.99 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=100.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceE--EEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADL--INTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|..+..++..+ +++.|+|+|+++.+++.+++|++..++...+ ..+|..........++||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~----~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELA----PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHc----CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCE
Confidence 578999999999999999888874 3569999999999999999999998876533 5566543321112467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccCeEEEEEEeCCC---CHHHHHHHHHHc
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKRGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
|++++|+.....- .+.+...|..... -......++..+.++|||||++++++++.. ....+...+.++
T Consensus 313 VllDaPcSg~G~~---~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~ 387 (426)
T TIGR00563 313 ILLDAPCSATGVI---RRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEH 387 (426)
T ss_pred EEEcCCCCCCccc---ccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhC
Confidence 9999997654321 1222222221111 112357889999999999999999998774 344555666655
No 75
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.61 E-value=3.7e-14 Score=124.97 Aligned_cols=151 Identities=14% Similarity=0.106 Sum_probs=106.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.|+ +++..+. .+.+++.+.+.+.. .++.+|||+|||+|.++++++.. +..|+|+|+++.+++.|++
T Consensus 203 ~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~---~~~~~vLDL~cG~G~~~l~la~~------~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 203 LVIRPQSFFQTNPKVAAQLYATARQWVRE---IPVTQMWDLFCGVGGFGLHCAGP------DTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred EEECCCccccCCHHHHHHHHHHHHHHHHh---cCCCEEEEccCCccHHHHHHhhc------CCeEEEEECCHHHHHHHHH
Confidence 445555 4444443 55555555554421 34679999999999999888753 3589999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025211 89 TLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
|+..++++. +++.+|+.+.... ...+||+|++|||+... ...+++.+. .++|++
T Consensus 274 N~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~vi~DPPr~G~-----------------------~~~~l~~l~-~~~p~~ 328 (374)
T TIGR02085 274 SAQMLGLDNLSFAALDSAKFATA-QMSAPELVLVNPPRRGI-----------------------GKELCDYLS-QMAPKF 328 (374)
T ss_pred HHHHcCCCcEEEEECCHHHHHHh-cCCCCCEEEECCCCCCC-----------------------cHHHHHHHH-hcCCCe
Confidence 999998854 8999999876533 22469999999997310 134445554 379999
Q ss_pred EEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025211 168 WLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++.+.+...++..+ .||....+..
T Consensus 329 ivyvsc~p~TlaRDl~~L---~gy~l~~~~~ 356 (374)
T TIGR02085 329 ILYSSCNAQTMAKDIAEL---SGYQIERVQL 356 (374)
T ss_pred EEEEEeCHHHHHHHHHHh---cCceEEEEEE
Confidence 999977656655565554 5787766543
No 76
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.61 E-value=1.8e-14 Score=114.27 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=93.8
Q ss_pred CccccCCc--hHHHHHHHHHh-hcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025211 16 EVYEPCDD--SFALVDALLAD-RINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~--~~~l~~~l~~~-~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
...+|+++ .+.+.+++... + ++.+|||+.||||.++++++.. +. ..|+.||.++.+++..++|++.
T Consensus 19 ~~~RPT~drvrealFniL~~~~~------~g~~vLDLFaGSGalGlEALSR----GA-~~v~fVE~~~~a~~~i~~N~~~ 87 (183)
T PF03602_consen 19 DNTRPTTDRVREALFNILQPRNL------EGARVLDLFAGSGALGLEALSR----GA-KSVVFVEKNRKAIKIIKKNLEK 87 (183)
T ss_dssp -TS-SSSHHHHHHHHHHHHCH-H------TT-EEEETT-TTSHHHHHHHHT----T--SEEEEEES-HHHHHHHHHHHHH
T ss_pred CCcCCCcHHHHHHHHHHhccccc------CCCeEEEcCCccCccHHHHHhc----CC-CeEEEEECCHHHHHHHHHHHHH
Confidence 57888887 67777777665 3 6899999999999999998776 22 4899999999999999999999
Q ss_pred cCCcc--eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh--hccccC
Q 025211 93 HNVHA--DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD--KLLSKR 166 (256)
Q Consensus 93 ~~~~~--~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~Lkpg 166 (256)
.+... .++..|....+... ...+||+|+++|||.... .+..++..+. .+|+++
T Consensus 88 l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~---------------------~~~~~l~~l~~~~~l~~~ 146 (183)
T PF03602_consen 88 LGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGL---------------------YYEELLELLAENNLLNED 146 (183)
T ss_dssp HT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--STTSCH---------------------HHHHHHHHHHHTTSEEEE
T ss_pred hCCCcceeeeccCHHHHHHhhcccCCCceEEEECCCcccch---------------------HHHHHHHHHHHCCCCCCC
Confidence 88765 88899987776543 357899999999996321 1355666665 789999
Q ss_pred eEEEEEEeCC
Q 025211 167 GWLYLVTLTA 176 (256)
Q Consensus 167 G~l~~~~~~~ 176 (256)
|.+++-+...
T Consensus 147 ~~ii~E~~~~ 156 (183)
T PF03602_consen 147 GLIIIEHSKK 156 (183)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEecCC
Confidence 9999965433
No 77
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.60 E-value=1.5e-14 Score=111.12 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=107.9
Q ss_pred hHHHHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEE
Q 025211 24 SFALVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLI 100 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~ 100 (256)
.+.+++|+.+.+.... ++...+|||+|||+|.++..+++. .-...++|+|+++.+++.|+...++.+.++ ++.
T Consensus 48 e~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~e----gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKE----GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred HHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHh----cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEE
Confidence 5667788877765211 233349999999999998777776 444579999999999999988888888875 899
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025211 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
+.|+.+. .+..+.||+|+--..|-..+-.. .+..+. +.-++..+.++|+|||++++..+++. .+
T Consensus 124 q~DI~~~--~~~~~qfdlvlDKGT~DAisLs~-----------d~~~~r--~~~Y~d~v~~ll~~~gifvItSCN~T-~d 187 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVLDKGTLDAISLSP-----------DGPVGR--LVVYLDSVEKLLSPGGIFVITSCNFT-KD 187 (227)
T ss_pred EeeccCC--cccccceeEEeecCceeeeecCC-----------CCcccc--eeeehhhHhhccCCCcEEEEEecCcc-HH
Confidence 9999886 44567888887644432211100 011111 24457788889999999999888776 78
Q ss_pred HHHHHHHHcCCcE
Q 025211 181 QICLQMMEKGYAA 193 (256)
Q Consensus 181 ~~~~~~~~~g~~~ 193 (256)
++.+.+...+|..
T Consensus 188 ELv~~f~~~~f~~ 200 (227)
T KOG1271|consen 188 ELVEEFENFNFEY 200 (227)
T ss_pred HHHHHHhcCCeEE
Confidence 8889998888664
No 78
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.59 E-value=5.5e-14 Score=125.89 Aligned_cols=130 Identities=17% Similarity=0.187 Sum_probs=98.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|..++.++..+. +++.|+++|+++.+++.+++|+.+.++.. .+.++|..... ....++||.|
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~---~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMK---DQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 5788999999999999998888753 35699999999999999999999998865 88899987642 1234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCc----HHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENG----RAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++|+|+...... ...+...|...... ...+.+++..+.++|||||++++++++..
T Consensus 312 l~DaPCsg~G~~---~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 312 LVDAPCTSLGTA---RNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred EECCCCCCCccc---cCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 999999654432 12222222111111 12457889999999999999999998765
No 79
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.59 E-value=1e-14 Score=122.49 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=82.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. .++++|+|+|+++.+++.|++++. ...++.+|+.+... ..+||+|+
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~----~~~~~v~gvD~s~~~i~~a~~~~~----~~~~~~~d~~~~~~---~~~fD~v~ 98 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVER----WPAARITGIDSSPAMLAEARSRLP----DCQFVEADIASWQP---PQALDLIF 98 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHhCC----CCeEEECchhccCC---CCCccEEE
Confidence 56799999999999998888776 567899999999999999988742 23788889876532 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..++...+ ...+++.+.+.|||||++++..+
T Consensus 99 ~~~~l~~~~d---------------------~~~~l~~~~~~LkpgG~~~~~~~ 131 (258)
T PRK01683 99 ANASLQWLPD---------------------HLELFPRLVSLLAPGGVLAVQMP 131 (258)
T ss_pred EccChhhCCC---------------------HHHHHHHHHHhcCCCcEEEEECC
Confidence 9987754432 46789999999999999998654
No 80
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.59 E-value=2.6e-14 Score=116.82 Aligned_cols=114 Identities=21% Similarity=0.198 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
..+++.+++.+. ..++.+|||+|||+|.++..+++... ++..|+++|+++++++.|++++..++++. +++.+|
T Consensus 63 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~---~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d 136 (215)
T TIGR00080 63 PHMVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVG---RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD 136 (215)
T ss_pred HHHHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC
Confidence 345566666553 25789999999999999988888743 24579999999999999999999988765 899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+.+.... ..+||+|+++++. ..+...+.+.|+|||++++..
T Consensus 137 ~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 137 GTQGWEP--LAPYDRIYVTAAG---------------------------PKIPEALIDQLKEGGILVMPV 177 (215)
T ss_pred cccCCcc--cCCCCEEEEcCCc---------------------------ccccHHHHHhcCcCcEEEEEE
Confidence 8765432 3689999997653 223445677899999999843
No 81
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.59 E-value=3.9e-15 Score=105.12 Aligned_cols=95 Identities=23% Similarity=0.302 Sum_probs=73.4
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCC
Q 025211 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYV 126 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~ 126 (256)
||+|||+|..+..+++. ++.+++++|+++++++.++++....+. .+..+|+.+. ++.+++||+|+++--+.
T Consensus 1 LdiG~G~G~~~~~l~~~-----~~~~v~~~D~~~~~~~~~~~~~~~~~~--~~~~~d~~~l--~~~~~sfD~v~~~~~~~ 71 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-----GGASVTGIDISEEMLEQARKRLKNEGV--SFRQGDAEDL--PFPDNSFDVVFSNSVLH 71 (95)
T ss_dssp EEET-TTSHHHHHHHHT-----TTCEEEEEES-HHHHHHHHHHTTTSTE--EEEESBTTSS--SS-TT-EEEEEEESHGG
T ss_pred CEecCcCCHHHHHHHhc-----cCCEEEEEeCCHHHHHHHHhcccccCc--hheeehHHhC--cccccccccccccccee
Confidence 89999999987766664 567999999999999999997754333 4899998887 55578999999975544
Q ss_pred CCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 127 PTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. .....+++++.++|||||++++
T Consensus 72 ~~---------------------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 72 HL---------------------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GS---------------------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred ec---------------------cCHHHHHHHHHHHcCcCeEEeC
Confidence 33 1268999999999999999985
No 82
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.58 E-value=8.5e-14 Score=126.76 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=84.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.+++.++.. . +++|+|+|+|+.+++.|+++.........++.+|+.+.. +.+++||+|+
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~----~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~I~ 337 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAEN----F-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT--YPDNSFDVIY 337 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHh----c-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC--CCCCCEEEEE
Confidence 46789999999999998877765 2 569999999999999999887544434588899987652 2347899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.++ ...++.+++++|||||++++...
T Consensus 338 s~~~l~h~~d---------------------~~~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 338 SRDTILHIQD---------------------KPALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred ECCcccccCC---------------------HHHHHHHHHHHcCCCeEEEEEEe
Confidence 9766654433 46889999999999999998653
No 83
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.58 E-value=5.6e-14 Score=115.50 Aligned_cols=128 Identities=18% Similarity=0.199 Sum_probs=97.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEE
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++|||+|||+|..+..+++. +++++++|+|+|+++++.+++++...++.. +++..|+..... +++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~----~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAER----HPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeeh
Confidence 47999999999988877776 567899999999999999999998877654 888888865421 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHHH
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQM 186 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~~ 186 (256)
.-.+.+..+ ...+++.+.++|+|||++++..... ....++.+.+
T Consensus 74 ~~~l~~~~~---------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 132 (224)
T smart00828 74 FEVIHHIKD---------------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELL 132 (224)
T ss_pred HHHHHhCCC---------------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHH
Confidence 533322211 4688999999999999999865421 1235677888
Q ss_pred HHcCCcEEEEEec
Q 025211 187 MEKGYAARIVVQR 199 (256)
Q Consensus 187 ~~~g~~~~~~~~~ 199 (256)
.+.||........
T Consensus 133 ~~~Gf~~~~~~~~ 145 (224)
T smart00828 133 ARNNLRVVEGVDA 145 (224)
T ss_pred HHCCCeEEEeEEC
Confidence 8899987655443
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.58 E-value=4.3e-14 Score=114.62 Aligned_cols=114 Identities=19% Similarity=0.188 Sum_probs=87.5
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEc
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINT 102 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~ 102 (256)
..+.+.+++.+. ..++.+|||+|||+|..+..+++.+. +.++|+++|+++++++.|++|+..++.. .+++.+
T Consensus 58 p~~~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~---~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~ 131 (205)
T PRK13944 58 PHMVAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIE---RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHG 131 (205)
T ss_pred HHHHHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence 445556666543 25778999999999999988887643 3458999999999999999999988875 388999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+.+..+. .++||+|+++... ..+...+.+.|+|||++++..
T Consensus 132 d~~~~~~~--~~~fD~Ii~~~~~---------------------------~~~~~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 132 DGKRGLEK--HAPFDAIIVTAAA---------------------------STIPSALVRQLKDGGVLVIPV 173 (205)
T ss_pred CcccCCcc--CCCccEEEEccCc---------------------------chhhHHHHHhcCcCcEEEEEE
Confidence 98775433 4689999997542 233456778999999998743
No 85
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.58 E-value=1.9e-14 Score=122.68 Aligned_cols=104 Identities=23% Similarity=0.287 Sum_probs=84.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++++..++++.++...|+..... +++||+|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~---~~~fD~I~~ 190 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL------GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASI---QEEYDFILS 190 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccc---cCCccEEEE
Confidence 4569999999999998888764 4699999999999999999998888866888888765422 578999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..+++.+. .....+++.+.++|+|||+++++.
T Consensus 191 ~~vl~~l~~-------------------~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 191 TVVLMFLNR-------------------ERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred cchhhhCCH-------------------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence 876654322 126788999999999999977654
No 86
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.58 E-value=2e-14 Score=123.99 Aligned_cols=190 Identities=17% Similarity=0.236 Sum_probs=110.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhc---ccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025211 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLG---QEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~---~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.+|+|.....++++++ . ..++.+|+|++||+|.+++++...+. .......++|+|+++.++..|+-|+..
T Consensus 27 ~~~TP~~i~~l~~~~~----~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l 99 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLL----N---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL 99 (311)
T ss_dssp GC---HHHHHHHHHHH----T---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHhhh----h---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence 4789965555555554 2 24678999999999999988887541 113467999999999999999999887
Q ss_pred cCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCC--Ccccccccchhhh-cCCCCcHHHHHHHHHHHhhccccC
Q 025211 93 HNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTP--EDEVGREGIASAW-AGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
++... .+..+|............||+|++||||.... ..... ....... ...... ....++..+.+.|++|
T Consensus 100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~Fi~~~l~~Lk~~ 176 (311)
T PF02384_consen 100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELE-KDERFKKYFPPKSN--AEYAFIEHALSLLKPG 176 (311)
T ss_dssp TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGC-TTCCCTTCSSSTTE--HHHHHHHHHHHTEEEE
T ss_pred hccccccccccccccccccccccccccccccCCCCcccccccccccc-ccccccccCCCccc--hhhhhHHHHHhhcccc
Confidence 77554 48888876553221246899999999998762 22111 1111111 111111 1234788899999999
Q ss_pred eEEEEEEeCC----C-CHHHHHHHHHHcCC-cEEEEEec-C--CCCccEEEEEEEecC
Q 025211 167 GWLYLVTLTA----N-DPSQICLQMMEKGY-AARIVVQR-S--TEEENLHIIKFWRDF 215 (256)
Q Consensus 167 G~l~~~~~~~----~-~~~~~~~~~~~~g~-~~~~~~~~-~--~~~~~~~l~~~~~~~ 215 (256)
|++.++.+.. . ....+++.+.+.+. ..+...+. . .......++.+.+..
T Consensus 177 G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~~i~aVI~Lp~~~F~~t~v~t~ilil~k~~ 234 (311)
T PF02384_consen 177 GRAAIILPNGFLFSSSSEKKIRKYLLENGYIEAVISLPSNLFKPTGVPTSILILNKKK 234 (311)
T ss_dssp EEEEEEEEHHHHHGSTHHHHHHHHHHHHEEEEEEEE--TTSSSSSSS-EEEEEEEESS
T ss_pred cceeEEecchhhhccchHHHHHHHHHhhchhhEEeecccceecccCcCceEEEEeecc
Confidence 9998888743 1 23467777766543 32232222 1 123345566666655
No 87
>PRK06922 hypothetical protein; Provisional
Probab=99.57 E-value=3.1e-14 Score=130.28 Aligned_cols=121 Identities=17% Similarity=0.155 Sum_probs=90.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|..+..++.. .|+.+++|+|+++.|++.|+++....+.+..++++|+.+....+.+++||+|++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~----~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEE----TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 5789999999999987777665 678899999999999999999877666555788899877532245688999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++++.....-. ..+..........+++.+.++|||||++++...
T Consensus 494 n~vLH~L~syIp--------~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 494 SSILHELFSYIE--------YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred chHHHhhhhhcc--------cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 988753211000 000000123467899999999999999999764
No 88
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.57 E-value=6.3e-14 Score=118.02 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=77.3
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-+++.+|||+|||.|.+++.+++. + +++|+|+.+|++..+.+++.+...|+.. ++...|..+. +.+||
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~----~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-----~~~fD 129 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAER----Y-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-----PGKFD 129 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHH----H---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG--------S-S
T ss_pred CCCCCEEEEeCCCccHHHHHHHHH----c-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-----CCCCC
Confidence 368999999999999998888887 4 6899999999999999999999998865 7888888764 24899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|++--.+-+. + ...+..+++.+.++|||||++++-..
T Consensus 130 ~IvSi~~~Ehv---------------g----~~~~~~~f~~~~~~LkpgG~~~lq~i 167 (273)
T PF02353_consen 130 RIVSIEMFEHV---------------G----RKNYPAFFRKISRLLKPGGRLVLQTI 167 (273)
T ss_dssp EEEEESEGGGT---------------C----GGGHHHHHHHHHHHSETTEEEEEEEE
T ss_pred EEEEEechhhc---------------C----hhHHHHHHHHHHHhcCCCcEEEEEec
Confidence 99994222111 1 12378999999999999999987443
No 89
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.56 E-value=3.2e-13 Score=115.65 Aligned_cols=129 Identities=17% Similarity=0.082 Sum_probs=91.0
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchhhhcCCCcc
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
..++++|||+|||+|.++..++.. +++ .|+|+|.|+.++..++..-... .....+...++.+... ..+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~----g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---~~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH----GAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---LYAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---CCCcC
Confidence 357899999999999987666654 433 7999999999987653322211 1223677777766532 25899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------------
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------------------- 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------------------- 176 (256)
+|+|+-.+++..+ ...++.++++.|+|||.+++.+...
T Consensus 191 ~V~s~gvL~H~~d---------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~ 249 (314)
T TIGR00452 191 TVFSMGVLYHRKS---------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVY 249 (314)
T ss_pred EEEEcchhhccCC---------------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccc
Confidence 9999876655433 4678999999999999999853210
Q ss_pred --CCHHHHHHHHHHcCCcEEEEE
Q 025211 177 --NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 177 --~~~~~~~~~~~~~g~~~~~~~ 197 (256)
....++..++++.||+.+.+.
T Consensus 250 flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 250 FIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEE
Confidence 024567788888999876654
No 90
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.56 E-value=8.7e-14 Score=121.53 Aligned_cols=143 Identities=17% Similarity=0.171 Sum_probs=108.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhhc--CCC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKRL--AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~~--~~~ 115 (256)
.+++|||+.|-||.+++.++.. ++ +|++||+|..+++.|++|+..|+++. .++++|+++.+.... ..+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~g------GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~ 290 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALG------GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEK 290 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhc------CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCc
Confidence 4899999999999999988774 44 89999999999999999999999864 899999999987543 358
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-----HHHHHHHHcC
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-----QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-----~~~~~~~~~g 190 (256)
||+||++||=+..+.... ......+..++..+.++|+|||+++++++...... .+...+...+
T Consensus 291 fDlIilDPPsF~r~k~~~------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~ 358 (393)
T COG1092 291 FDLIILDPPSFARSKKQE------------FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFSSDLFLEIIARAAAAAG 358 (393)
T ss_pred ccEEEECCcccccCcccc------------hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccCHHHHHHHHHHHHHhcC
Confidence 999999999876555331 11234578899999999999999999887655333 2334444455
Q ss_pred CcEEEEEecCCC
Q 025211 191 YAARIVVQRSTE 202 (256)
Q Consensus 191 ~~~~~~~~~~~~ 202 (256)
.....+......
T Consensus 359 ~~~~~~~~~~~~ 370 (393)
T COG1092 359 RRAQEIEGEGQP 370 (393)
T ss_pred CcEEEeeccCCC
Confidence 555554433333
No 91
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.56 E-value=2.5e-13 Score=122.12 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=108.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.++ ++++... ++.+++.+.+.+. ..++.+|||+|||+|.+++.++.. ...|+|+|+++.+++.|++
T Consensus 262 ~~~~~~~F~Q~N~~~~~~l~~~~~~~l~---~~~~~~vLDl~cG~G~~sl~la~~------~~~V~~vE~~~~av~~a~~ 332 (431)
T TIGR00479 262 FSLSARDFFQVNSGQNEKLVDRALEALE---LQGEELVVDAYCGVGTFTLPLAKQ------AKSVVGIEVVPESVEKAQQ 332 (431)
T ss_pred EEECCCceeecCHHHHHHHHHHHHHHhc---cCCCCEEEEcCCCcCHHHHHHHHh------CCEEEEEEcCHHHHHHHHH
Confidence 445555 4555544 6667777766653 245689999999999999998875 2389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhh--cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025211 89 TLEAHNVHA-DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
|+..+++.+ +++.+|+.+.+... ...+||+|++|||.... ...+++.+.+ ++|
T Consensus 333 n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dPPr~G~-----------------------~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 333 NAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDPPRKGC-----------------------AAEVLRTIIE-LKP 388 (431)
T ss_pred HHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECcCCCCC-----------------------CHHHHHHHHh-cCC
Confidence 999998865 99999998765432 23579999999996310 1344555443 789
Q ss_pred CeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025211 166 RGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 166 gG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
++++++++.+.+ ...-.+.+.+.||....+..
T Consensus 389 ~~ivyvsc~p~t-lard~~~l~~~gy~~~~~~~ 420 (431)
T TIGR00479 389 ERIVYVSCNPAT-LARDLEFLCKEGYGITWVQP 420 (431)
T ss_pred CEEEEEcCCHHH-HHHHHHHHHHCCeeEEEEEE
Confidence 988877543332 33334555667887766554
No 92
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.55 E-value=2.1e-13 Score=119.62 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=104.4
Q ss_pred CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025211 16 EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 16 ~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
+++++... ++.+++++.+.+. ..+.+|||++||+|.+++.++... ..|+|+|+++.+++.|++|+..++
T Consensus 183 sF~Q~N~~~~e~l~~~v~~~~~----~~~~~vLDl~~G~G~~sl~la~~~------~~v~~vE~~~~ai~~a~~N~~~~~ 252 (362)
T PRK05031 183 SFTQPNAAVNEKMLEWALDATK----GSKGDLLELYCGNGNFTLALARNF------RRVLATEISKPSVAAAQYNIAANG 252 (362)
T ss_pred CeeccCHHHHHHHHHHHHHHhh----cCCCeEEEEeccccHHHHHHHhhC------CEEEEEECCHHHHHHHHHHHHHhC
Confidence 37777766 7888888877653 123579999999999999888752 389999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhc--------------CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH
Q 025211 95 VHA-DLINTDIASGLEKRL--------------AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA 159 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~--------------~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (256)
+++ +++.+|+.+.+.... ..+||+|+.|||+.- ....+++.+
T Consensus 253 ~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G-----------------------~~~~~l~~l 309 (362)
T PRK05031 253 IDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG-----------------------LDDETLKLV 309 (362)
T ss_pred CCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCC-----------------------CcHHHHHHH
Confidence 865 899999988754321 125899999999621 023445554
Q ss_pred hhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEe
Q 025211 160 DKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
.+ +++++|+++.+.+...++.... + ||....+.+
T Consensus 310 ~~---~~~ivyvSC~p~tlarDl~~L~-~-gY~l~~v~~ 343 (362)
T PRK05031 310 QA---YERILYISCNPETLCENLETLS-Q-THKVERFAL 343 (362)
T ss_pred Hc---cCCEEEEEeCHHHHHHHHHHHc-C-CcEEEEEEE
Confidence 43 6788888665544444444433 3 888766553
No 93
>PRK08317 hypothetical protein; Provisional
Probab=99.55 E-value=4.5e-13 Score=110.67 Aligned_cols=121 Identities=12% Similarity=0.140 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+.+++.+. ..++.+|||+|||+|.++..++..+ .+.++++|+|+++.+++.++++.........+...|+
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~~a~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~ 78 (241)
T PRK08317 5 RRYRARTFELLA---VQPGDRVLDVGCGPGNDARELARRV---GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA 78 (241)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHhc---CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc
Confidence 334455555543 2577899999999999988888763 2567999999999999999988433333347888887
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+. ++..++||+|+++..+.+..+ ...+++.+.++|+|||.+++..+
T Consensus 79 ~~~--~~~~~~~D~v~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 79 DGL--PFPDGSFDAVRSDRVLQHLED---------------------PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred ccC--CCCCCCceEEEEechhhccCC---------------------HHHHHHHHHHHhcCCcEEEEEec
Confidence 654 233578999999755543322 46789999999999999998664
No 94
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.55 E-value=6e-14 Score=111.29 Aligned_cols=104 Identities=21% Similarity=0.287 Sum_probs=81.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.++||+|||.|..++.+|+. |..|+++|+|+.+++.+++.+...+++.+....|+.+... ++.||+|++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~------G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~---~~~yD~I~s 100 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ------GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF---PEEYDFIVS 100 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT------T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS----TTTEEEEEE
T ss_pred CCCcEEEcCCCCcHHHHHHHHC------CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc---cCCcCEEEE
Confidence 6789999999999999999987 6799999999999999999888888888899999887643 368999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-.+...... ....+++.+...++|||+.++++
T Consensus 101 t~v~~fL~~~-------------------~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 101 TVVFMFLQRE-------------------LRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ESSGGGS-GG-------------------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeccCCHH-------------------HHHHHHHHHHhhcCCcEEEEEEE
Confidence 5444332221 26788999999999999988855
No 95
>PTZ00146 fibrillarin; Provisional
Probab=99.55 E-value=2e-12 Score=108.63 Aligned_cols=170 Identities=15% Similarity=0.205 Sum_probs=113.4
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025211 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. ...|+..|+.-+..++-+++.+|||+|||+|.++..++..+. +...|+++|+++.+.+.+.+..... .
T Consensus 106 eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG---~~G~VyAVD~s~r~~~dLl~~ak~r-~ 181 (293)
T PTZ00146 106 EYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVG---PEGVVYAVEFSHRSGRDLTNMAKKR-P 181 (293)
T ss_pred eeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhC---CCCEEEEEECcHHHHHHHHHHhhhc-C
Confidence 4777766 788888887777766667889999999999999999998863 3458999999998665444433221 2
Q ss_pred cceEEEcchhhch-hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 96 HADLINTDIASGL-EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~-~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..++..|+.... .....++||+|+++... ++ ....++.++.++|||||.+++...
T Consensus 182 NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~---pd--------------------q~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 182 NIVPIIEDARYPQKYRMLVPMVDVIFADVAQ---PD--------------------QARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCEEEECCccChhhhhcccCCCCEEEEeCCC---cc--------------------hHHHHHHHHHHhccCCCEEEEEEe
Confidence 2377788876432 11123579999997531 11 134556788999999999998433
Q ss_pred CCC-----CHHHH----HHHHHHcCCcEEEEEe-cCCCCccEEEEEEEe
Q 025211 175 TAN-----DPSQI----CLQMMEKGYAARIVVQ-RSTEEENLHIIKFWR 213 (256)
Q Consensus 175 ~~~-----~~~~~----~~~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~ 213 (256)
... ..+++ .+++++.+|+...... ......+..++-..+
T Consensus 239 a~~id~g~~pe~~f~~ev~~L~~~GF~~~e~v~L~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 239 ANCIDSTAKPEVVFASEVQKLKKEGLKPKEQLTLEPFERDHAVVIGVYR 287 (293)
T ss_pred ccccccCCCHHHHHHHHHHHHHHcCCceEEEEecCCccCCcEEEEEEEc
Confidence 211 12333 4778888998765443 334445545544333
No 96
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.55 E-value=2.8e-13 Score=108.31 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CC-Ccc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AG-LVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~-~fD 117 (256)
.+.+|||++||+|.++++++.. +. ..|+++|.++.+++.+++|+..++... +++++|+.+.+.... .. .||
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr----ga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR----GA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC----CC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCce
Confidence 5789999999999999988876 32 389999999999999999999998753 899999977654322 22 489
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHH--hhccccCeEEEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSA--DKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~LkpgG~l~~~~ 173 (256)
+|+.+|||.... ...++..+ ..+|+++|++++-+
T Consensus 124 vv~~DPPy~~~~----------------------~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 124 VIYLDPPFFNGA----------------------LQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred EEEECcCCCCCc----------------------HHHHHHHHHHCCCCCCCeEEEEEe
Confidence 999999995311 23334433 35789999888744
No 97
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.54 E-value=1.2e-13 Score=110.92 Aligned_cols=132 Identities=21% Similarity=0.306 Sum_probs=100.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhc-CCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~ 118 (256)
.....+||||||.|.+++.+|.. +|+..++|+|+....+..+.+.+...++++ .++++|+...+.... ++++|.
T Consensus 16 ~~~~l~lEIG~G~G~~l~~~A~~----~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~ 91 (195)
T PF02390_consen 16 NDNPLILEIGCGKGEFLIELAKR----NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDR 91 (195)
T ss_dssp SCCEEEEEET-TTSHHHHHHHHH----STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEE
T ss_pred CCCCeEEEecCCCCHHHHHHHHH----CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchhe
Confidence 34459999999999999999888 899999999999999999999999999887 999999988776554 489999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK 189 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 189 (256)
|..+.| ++-.+.+....++. ...++..+.++|+|||.+.+.+.......+..+.+...
T Consensus 92 i~i~FP-----DPWpK~rH~krRl~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 92 IYINFP-----DPWPKKRHHKRRLV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp EEEES----------SGGGGGGSTT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHH
T ss_pred EEEeCC-----CCCcccchhhhhcC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 999765 11112222233332 47889999999999999999887666667777777774
No 98
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.54 E-value=2.6e-13 Score=109.75 Aligned_cols=131 Identities=13% Similarity=0.139 Sum_probs=97.4
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhccc--CCCceEEEEeCCHHHHHHHHHHHHHcCCcc----eEEEcchhhchhhhcC
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQE--VPGVQYIATDINPYAVEVTRKTLEAHNVHA----DLINTDIASGLEKRLA 113 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~--~~~~~v~giD~~~~~i~~a~~~~~~~~~~~----~~~~~d~~~~~~~~~~ 113 (256)
+.++.++||++||||.+++-+...+... ..+.+|+..|+||+|++.++++..+.++.. .++.+|+++. ++.+
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L--pFdd 175 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL--PFDD 175 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC--CCCC
Confidence 4677999999999999998888876432 123689999999999999999987766543 7999999887 4778
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025211 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
.+||..+.-.-.-+.. ..++.+++++++|||||+++....+....+.+...+..+.|++
T Consensus 176 ~s~D~yTiafGIRN~t---------------------h~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~V 234 (296)
T KOG1540|consen 176 DSFDAYTIAFGIRNVT---------------------HIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDV 234 (296)
T ss_pred CcceeEEEecceecCC---------------------CHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhh
Confidence 9999998843222111 1678999999999999999987765543334444444444444
No 99
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.54 E-value=2.2e-13 Score=112.68 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=91.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..++..+++.+.......+.+|||+|||+|.++..++.. ++...++++|+++.+++.++++.. ....++.+|+
T Consensus 17 ~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~---~~~~~~~~d~ 89 (240)
T TIGR02072 17 REMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKR----FPQAEFIALDISAGMLAQAKTKLS---ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHh----CCCCcEEEEeChHHHHHHHHHhcC---CCCeEEecch
Confidence 344444544443322234589999999999998888776 567789999999999998887654 1347888898
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
.+.. +.+++||+|+++..+++..+ ...++..+.++|+|||++++..+......
T Consensus 90 ~~~~--~~~~~fD~vi~~~~l~~~~~---------------------~~~~l~~~~~~L~~~G~l~~~~~~~~~~~ 142 (240)
T TIGR02072 90 EKLP--LEDSSFDLIVSNLALQWCDD---------------------LSQALSELARVLKPGGLLAFSTFGPGTLH 142 (240)
T ss_pred hhCC--CCCCceeEEEEhhhhhhccC---------------------HHHHHHHHHHHcCCCcEEEEEeCCccCHH
Confidence 7653 33578999999866543322 46789999999999999999775544433
No 100
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.54 E-value=1.2e-13 Score=112.46 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
.-.++..+++.+. ..++.+|||+|||+|.++..+++.++ ++++|+++|+++++++.+++++...+... +++++
T Consensus 61 ~p~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~---~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g 134 (212)
T PRK13942 61 AIHMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVG---KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG 134 (212)
T ss_pred cHHHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence 3455566666553 25789999999999999988887643 35699999999999999999999888764 99999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|......+ .+.||+|+++-.. ..+...+.+.|||||++++..
T Consensus 135 d~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 135 DGTLGYEE--NAPYDRIYVTAAG---------------------------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CcccCCCc--CCCcCEEEECCCc---------------------------ccchHHHHHhhCCCcEEEEEE
Confidence 98765432 4789999985321 223445667899999998843
No 101
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.2e-13 Score=110.80 Aligned_cols=123 Identities=19% Similarity=0.242 Sum_probs=106.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|+|.|+|+|.++..++..+ +|.++|+.+|+.++.++.|++|+...++.+ .+..+|+.+...+ ..||+
T Consensus 93 ~pg~rVlEAGtGSG~lt~~La~~v---g~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~---~~vDa 166 (256)
T COG2519 93 SPGSRVLEAGTGSGALTAYLARAV---GPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDE---EDVDA 166 (256)
T ss_pred CCCCEEEEcccCchHHHHHHHHhh---CCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccc---cccCE
Confidence 589999999999999999998766 466799999999999999999999988765 7777888877544 49999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
|+.+.|= ...+++.+.+.|||||.+++..|..++.......+++.||....
T Consensus 167 v~LDmp~--------------------------PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 167 VFLDLPD--------------------------PWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred EEEcCCC--------------------------hHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCccchh
Confidence 9998761 35889999999999999999999888888899999999887543
No 102
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.54 E-value=2.8e-13 Score=116.11 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=75.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-
Q 025211 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN- 94 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~- 94 (256)
-.+.++++.+..++.++..+......++.+|||+|||+|.+++.+++. +..|+|+|+|+.|++.++++....+
T Consensus 118 ~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~------g~~V~gvD~S~~ml~~A~~~~~~~~~ 191 (315)
T PLN02585 118 VQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE------GAIVSASDISAAMVAEAERRAKEALA 191 (315)
T ss_pred eeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhccc
Confidence 356778877777777777664211235789999999999998877764 4689999999999999999987642
Q ss_pred -----CcceEEEcchhhchhhhcCCCccEEEECCCCCCC
Q 025211 95 -----VHADLINTDIASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 95 -----~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
....+...|+.+. +++||+|+|.-.+.+.
T Consensus 192 ~~~~~~~~~f~~~Dl~~l-----~~~fD~Vv~~~vL~H~ 225 (315)
T PLN02585 192 ALPPEVLPKFEANDLESL-----SGKYDTVTCLDVLIHY 225 (315)
T ss_pred ccccccceEEEEcchhhc-----CCCcCEEEEcCEEEec
Confidence 1236777886543 4789999997665443
No 103
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=8.1e-13 Score=114.09 Aligned_cols=138 Identities=16% Similarity=0.109 Sum_probs=96.8
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhh
Q 025211 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIAS 106 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~ 106 (256)
+.+++.+. ..++++|||+|||+|.++..++.. +++ .|+|+|+++.++..++...... ..+..++.+|+.+
T Consensus 112 ~~l~~~l~---~l~g~~VLDIGCG~G~~~~~la~~----g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~ 183 (322)
T PRK15068 112 DRVLPHLS---PLKGRTVLDVGCGNGYHMWRMLGA----GAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQ 183 (322)
T ss_pred HHHHHhhC---CCCCCEEEEeccCCcHHHHHHHHc----CCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHH
Confidence 44444443 246799999999999998877765 443 6999999999987554432222 2234788888876
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC---C-------
Q 025211 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT---A------- 176 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~---~------- 176 (256)
.. . +++||+|+|.-..++..+ ...+++++++.|+|||.+++.+.. .
T Consensus 184 lp--~-~~~FD~V~s~~vl~H~~d---------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 184 LP--A-LKAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred CC--C-cCCcCEEEECChhhccCC---------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 62 2 578999999655443322 467899999999999999875311 0
Q ss_pred -------------CCHHHHHHHHHHcCCcEEEEEe
Q 025211 177 -------------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 177 -------------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
....++..++++.||....+..
T Consensus 240 ~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 240 GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEEe
Confidence 1235678899999998766553
No 104
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.53 E-value=1.3e-12 Score=108.10 Aligned_cols=107 Identities=18% Similarity=0.268 Sum_probs=83.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCC-CceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVP-GVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+|||+|||+|.++..++..+ + ..+++++|+++.+++.+++++..++.. ..++.+|+.+.. ...++||
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~----~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D 123 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAV----GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP--FPDNSFD 123 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHc----CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC--CCCCCcc
Confidence 357899999999999988887763 3 579999999999999999998765443 378888887653 2357899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+++.-+.+.++ ...+++.+.++|+|||+++++..
T Consensus 124 ~I~~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 124 AVTIAFGLRNVPD---------------------IDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred EEEEecccccCCC---------------------HHHHHHHHHHhccCCcEEEEEEe
Confidence 9998644332221 56789999999999999988653
No 105
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.52 E-value=2.8e-15 Score=107.36 Aligned_cols=98 Identities=22% Similarity=0.422 Sum_probs=62.4
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEEECCCC
Q 025211 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
||+|||+|.++..+... .+..+++|+|+|+.|++.+++++....... .....+..+.......++||+|++.-.+
T Consensus 1 LdiGcG~G~~~~~l~~~----~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEE----LPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHH----C-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHh----CCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhH
Confidence 79999999988877777 578899999999999998988888766433 3344343333222223699999998776
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025211 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
++..+ ...+++.+.++|+|||++
T Consensus 77 ~~l~~---------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 77 HHLED---------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S--S----------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhhhh---------------------HHHHHHHHHHHcCCCCCC
Confidence 65422 678999999999999986
No 106
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.52 E-value=3e-13 Score=111.63 Aligned_cols=128 Identities=19% Similarity=0.277 Sum_probs=102.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc-hhhhcCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG-LEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~-~~~~~~~~fD 117 (256)
.||.+|||.|+|+|.++..++..+ .|.+.|+.+|..++.++.|++|+..+++.. .+.+.|+.+. .....+..+|
T Consensus 39 ~pG~~VlEaGtGSG~lt~~l~r~v---~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D 115 (247)
T PF08704_consen 39 RPGSRVLEAGTGSGSLTHALARAV---GPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD 115 (247)
T ss_dssp -TT-EEEEE--TTSHHHHHHHHHH---TTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHh---CCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence 699999999999999999999887 467799999999999999999999999864 8999998643 2222246799
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
.|+.+.|- ....+..+.+.| ++||+++...|...+.......+++.||..+.+
T Consensus 116 avfLDlp~--------------------------Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~gf~~i~~ 169 (247)
T PF08704_consen 116 AVFLDLPD--------------------------PWEAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHGFTDIET 169 (247)
T ss_dssp EEEEESSS--------------------------GGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTTEEEEEE
T ss_pred EEEEeCCC--------------------------HHHHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCCCeeeEE
Confidence 99998772 235688888999 999999998888888888899999999876544
Q ss_pred E
Q 025211 197 V 197 (256)
Q Consensus 197 ~ 197 (256)
.
T Consensus 170 ~ 170 (247)
T PF08704_consen 170 V 170 (247)
T ss_dssp E
T ss_pred E
Confidence 3
No 107
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.52 E-value=4.6e-13 Score=111.62 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=87.8
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
-++|.+|||+|||.|.+++.+|+. + +++|+|+++|+++.+.+++.+...|+.. ++...|..++ .+.||
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~----y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~-----~e~fD 139 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEE----Y-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF-----EEPFD 139 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHH----c-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc-----ccccc
Confidence 379999999999999999888887 4 7899999999999999999999999873 8888888776 34599
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-|++---|-+. + .+.++.++..+.++|+|||++++-+.
T Consensus 140 rIvSvgmfEhv---------------g----~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 140 RIVSVGMFEHV---------------G----KENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred eeeehhhHHHh---------------C----cccHHHHHHHHHhhcCCCceEEEEEe
Confidence 99994333221 1 12378999999999999999998554
No 108
>PRK04457 spermidine synthase; Provisional
Probab=99.52 E-value=9.7e-13 Score=110.47 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=91.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++++|||+|||+|.++..++.. .|+.+++++|+++++++.|++++...+. ..+++.+|+.+.+.. .+++||+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~----~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-~~~~yD~ 139 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTY----LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-HRHSTDV 139 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHh----CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-CCCCCCE
Confidence 35689999999999988777766 7888999999999999999999865543 238899999887654 2468999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHcCCc
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEKGYA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~g~~ 192 (256)
|++|. |.....+ .......+++.+.+.|+|||++++...... ......+.+++. |.
T Consensus 140 I~~D~-~~~~~~~----------------~~l~t~efl~~~~~~L~pgGvlvin~~~~~~~~~~~l~~l~~~-F~ 196 (262)
T PRK04457 140 ILVDG-FDGEGII----------------DALCTQPFFDDCRNALSSDGIFVVNLWSRDKRYDRYLERLESS-FE 196 (262)
T ss_pred EEEeC-CCCCCCc----------------cccCcHHHHHHHHHhcCCCcEEEEEcCCCchhHHHHHHHHHHh-cC
Confidence 99973 2111000 001136889999999999999998543222 223344455443 44
No 109
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.51 E-value=4.9e-14 Score=111.26 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=87.6
Q ss_pred cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCcc
Q 025211 38 LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 38 ~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD 117 (256)
++.....+|.|+|||+|..+-.+++. +|++.|+|+|.|++|++.|++.. .+.+|..+|+.+..++ ..+|
T Consensus 26 Vp~~~~~~v~DLGCGpGnsTelL~~R----wP~A~i~GiDsS~~Mla~Aa~rl----p~~~f~~aDl~~w~p~---~~~d 94 (257)
T COG4106 26 VPLERPRRVVDLGCGPGNSTELLARR----WPDAVITGIDSSPAMLAKAAQRL----PDATFEEADLRTWKPE---QPTD 94 (257)
T ss_pred CCccccceeeecCCCCCHHHHHHHHh----CCCCeEeeccCCHHHHHHHHHhC----CCCceecccHhhcCCC---Cccc
Confidence 44457899999999999987555555 99999999999999999997653 3459999999988654 6899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
++++|-.+...++ ...++..+...|.|||++.+-++..
T Consensus 95 llfaNAvlqWlpd---------------------H~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 95 LLFANAVLQWLPD---------------------HPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred hhhhhhhhhhccc---------------------cHHHHHHHHHhhCCCceEEEECCCc
Confidence 9999987766555 3578889999999999999976644
No 110
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.51 E-value=4.7e-13 Score=110.57 Aligned_cols=104 Identities=23% Similarity=0.266 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~ 114 (256)
.++++|||+|||+|..+++++..+. ++++++++|+++++++.|++|++.+++.. +++.+|+.+.+.... .+
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~---~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~ 143 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALP---EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKP 143 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCC
Confidence 3678999999999999888887643 35699999999999999999999999864 899999988765431 36
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+++.+ ...+..+++.+.++|+|||.+++
T Consensus 144 ~fD~VfiDa~------------------------k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 144 EFDFAFVDAD------------------------KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred CCCEEEECCC------------------------HHHHHHHHHHHHHhcCCCeEEEE
Confidence 8999999743 11256788999999999999886
No 111
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.51 E-value=3e-13 Score=115.91 Aligned_cols=145 Identities=18% Similarity=0.116 Sum_probs=97.5
Q ss_pred ccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025211 6 AQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
+.+..+.-.|+.|.-|.+...+-++..+....+ .++.+|||+|||+|..+..++..+.+ +.+++++|+|++|++.
T Consensus 29 ~lf~~i~~~peYy~tr~E~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~---~~~~~~iDiS~~mL~~ 103 (301)
T TIGR03438 29 ELFEQICELPEYYPTRTEAAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQ---PARYVPIDISADALKE 103 (301)
T ss_pred HHHHHHHCCCccccHHHHHHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhcc---CCeEEEEECCHHHHHH
Confidence 334455677888876666655555443332222 35689999999999999888877431 4689999999999999
Q ss_pred HHHHHHHc--CCcceEEEcchhhchhhhcC---CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025211 86 TRKTLEAH--NVHADLINTDIASGLEKRLA---GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 86 a~~~~~~~--~~~~~~~~~d~~~~~~~~~~---~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
+++++... +++..++++|+.+...-... ....++++...+++.+.. ....+++.++
T Consensus 104 a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~-------------------e~~~~L~~i~ 164 (301)
T TIGR03438 104 SAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPE-------------------EAVAFLRRIR 164 (301)
T ss_pred HHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHH-------------------HHHHHHHHHH
Confidence 99987653 34447789998764321111 123344444444433322 2568999999
Q ss_pred hccccCeEEEEEEe
Q 025211 161 KLLSKRGWLYLVTL 174 (256)
Q Consensus 161 ~~LkpgG~l~~~~~ 174 (256)
+.|+|||.+++-..
T Consensus 165 ~~L~pgG~~lig~d 178 (301)
T TIGR03438 165 QLLGPGGGLLIGVD 178 (301)
T ss_pred HhcCCCCEEEEecc
Confidence 99999999997543
No 112
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.49 E-value=2.7e-12 Score=105.08 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=81.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+|||+|||+|.++..+++. .+. ++++++|+++.+++.++++.. .....+++.+|+.+.. +..++||+|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~----~~~~~~~~~iD~~~~~~~~~~~~~~-~~~~i~~~~~d~~~~~--~~~~~~D~i 110 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKS----APDRGKVTGVDFSSEMLEVAKKKSE-LPLNIEFIQADAEALP--FEDNSFDAV 110 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHh----cCCCceEEEEECCHHHHHHHHHHhc-cCCCceEEecchhcCC--CCCCcEEEE
Confidence 46899999999999998887776 343 689999999999999998875 2223478888987753 234689999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++..+.+.++ ...+++.+.+.|+|||+++++..
T Consensus 111 ~~~~~~~~~~~---------------------~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 111 TIAFGLRNVTD---------------------IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred EEeeeeCCccc---------------------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 98654432221 56789999999999999998654
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.49 E-value=4.3e-13 Score=108.53 Aligned_cols=127 Identities=17% Similarity=0.213 Sum_probs=88.0
Q ss_pred CCccccCCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025211 15 PEVYEPCDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.+.|.+|..++.+....++.+..+. ..++.+|||+|||+|.++..++.. .++.+++|+|+|+++++.|+++..
T Consensus 14 g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~----~~~~~v~giDiS~~~l~~A~~~~~- 88 (204)
T TIGR03587 14 GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRL----LPFKHIYGVEINEYAVEKAKAYLP- 88 (204)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHh----CCCCeEEEEECCHHHHHHHHhhCC-
Confidence 4457888765544444433332111 135689999999999998877765 456799999999999999988642
Q ss_pred cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 93 HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 93 ~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
...+.++|+.+ ++.+++||+|+++-.+.+.+.. ....+++++.+++ ++.+++.
T Consensus 89 ---~~~~~~~d~~~---~~~~~sfD~V~~~~vL~hl~p~-------------------~~~~~l~el~r~~--~~~v~i~ 141 (204)
T TIGR03587 89 ---NINIIQGSLFD---PFKDNFFDLVLTKGVLIHINPD-------------------NLPTAYRELYRCS--NRYILIA 141 (204)
T ss_pred ---CCcEEEeeccC---CCCCCCEEEEEECChhhhCCHH-------------------HHHHHHHHHHhhc--CcEEEEE
Confidence 23777888776 3346799999998766544321 2567888888876 4555554
Q ss_pred E
Q 025211 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 142 e 142 (204)
T TIGR03587 142 E 142 (204)
T ss_pred E
Confidence 4
No 114
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.48 E-value=1.9e-12 Score=111.44 Aligned_cols=106 Identities=15% Similarity=0.184 Sum_probs=82.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.+++.+++. +|+.+++++|. +.+++.+++++...++.. +++.+|+.+... ..+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~----~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~----~~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKH----FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY----PEADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHH----CCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCC----CCCCE
Confidence 46689999999999998888887 88899999997 789999999999888754 789999875421 23699
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|++.-..+..++ +....+++++.+.|+|||++++...
T Consensus 219 v~~~~~lh~~~~-------------------~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANE-------------------QLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCCh-------------------HHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 876432222111 1246789999999999999999764
No 115
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.48 E-value=4.7e-14 Score=114.64 Aligned_cols=103 Identities=24% Similarity=0.368 Sum_probs=77.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-------eEEEcchhhchhhhcCCC
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-------DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-------~~~~~d~~~~~~~~~~~~ 115 (256)
+.+|||+|||+|.++..++++ +++|+|||+++.|++.|++......... ++.+.|+... .+.
T Consensus 90 g~~ilDvGCGgGLLSepLArl------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~-----~~~ 158 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL-----TGK 158 (282)
T ss_pred CceEEEeccCccccchhhHhh------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-----ccc
Confidence 478999999999999999987 5699999999999999999855444322 3444444443 356
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
||+|+|--.+.|. .....++..+.++|||||++++.+....
T Consensus 159 fDaVvcsevleHV---------------------~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 159 FDAVVCSEVLEHV---------------------KDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred cceeeeHHHHHHH---------------------hCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 9999994332221 1267889999999999999999775433
No 116
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.48 E-value=2.1e-12 Score=104.88 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhch------hhhcC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGL------EKRLA 113 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~------~~~~~ 113 (256)
+++.+|||+|||+|.++..+++... +...|+|+|+++ + +.. +..++++|+.+.. .++..
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~---~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~ 115 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIG---DKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGD 115 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcC---CCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence 5678999999999999988887642 456999999998 1 111 2388999988742 12345
Q ss_pred CCccEEEECC-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025211 114 GLVDVMVVNP-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 114 ~~fD~Ii~np-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
++||+|++++ |++. .... .... ........+++.+.++|+|||++++.........++...+.. .|.
T Consensus 116 ~~~D~V~S~~~~~~~-g~~~-----~d~~-----~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~-~f~ 183 (209)
T PRK11188 116 SKVQVVMSDMAPNMS-GTPA-----VDIP-----RAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS-LFT 183 (209)
T ss_pred CCCCEEecCCCCccC-CChH-----HHHH-----HHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh-Cce
Confidence 7899999987 4432 1110 0000 001123578999999999999999976655555566555544 444
Q ss_pred EEEE
Q 025211 193 ARIV 196 (256)
Q Consensus 193 ~~~~ 196 (256)
...+
T Consensus 184 ~v~~ 187 (209)
T PRK11188 184 KVKV 187 (209)
T ss_pred EEEE
Confidence 4333
No 117
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.48 E-value=9.3e-13 Score=107.91 Aligned_cols=101 Identities=23% Similarity=0.323 Sum_probs=76.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+|||+|||+|.++..++.. +..++|+|+++++++.|++++...+. ...+.++|+.+.. ++||+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~fD~ 122 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKR------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-----GEFDI 122 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----CCcCE
Confidence 46899999999999998877653 45899999999999999999887765 3388888987652 68999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|++.-.+.+.+. .....++..+.+++++++++.+
T Consensus 123 ii~~~~l~~~~~-------------------~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 123 VVCMDVLIHYPA-------------------SDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred EEEhhHHHhCCH-------------------HHHHHHHHHHHHHhCCCEEEEE
Confidence 998544322211 1246778888888887666554
No 118
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.48 E-value=8.8e-13 Score=102.31 Aligned_cols=98 Identities=22% Similarity=0.378 Sum_probs=72.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++|+|+++.+++. ........+.... ...+++||+|+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~~g~D~~~~~~~~---------~~~~~~~~~~~~~--~~~~~~fD~i~ 83 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKR------GFEVTGVDISPQMIEK---------RNVVFDNFDAQDP--PFPDGSFDLII 83 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHT------TSEEEEEESSHHHHHH---------TTSEEEEEECHTH--HCHSSSEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh------CCEEEEEECCHHHHhh---------hhhhhhhhhhhhh--hccccchhhHh
Confidence 57899999999999987766553 3499999999999987 1112222222222 22357999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|+-.+.+.++ ...+++.+.++|||||++++..+..
T Consensus 84 ~~~~l~~~~d---------------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 84 CNDVLEHLPD---------------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EESSGGGSSH---------------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hHHHHhhccc---------------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9765544332 5789999999999999999988754
No 119
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.47 E-value=1.1e-12 Score=115.86 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=81.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+|||+|||+|.+++.+++. .+++|+|+|+|+++++.|+++.. +...++...|..+. +++||.|+
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~-----~g~~V~giDlS~~~l~~A~~~~~--~l~v~~~~~D~~~l-----~~~fD~Iv 233 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEH-----YGVSVVGVTISAEQQKLAQERCA--GLPVEIRLQDYRDL-----NGQFDRIV 233 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHHHhc--cCeEEEEECchhhc-----CCCCCEEE
Confidence 57899999999999998877765 25699999999999999999874 34457777776543 36899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.+. .....+++.+.++|||||++++...
T Consensus 234 s~~~~ehvg~-------------------~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 234 SVGMFEHVGP-------------------KNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred EeCchhhCCh-------------------HHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 9765543321 1257889999999999999998654
No 120
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.47 E-value=1.8e-12 Score=109.12 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=90.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchhhh-cCCCcc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLEKR-LAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~~~-~~~~fD 117 (256)
.+++|||+.|-||.+++.++.. ....|+++|.|..+++.+++|+..|+++. +++..|+.+.+... ..++||
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-----GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD 197 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-----GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFD 197 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-----TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EE
T ss_pred CCCceEEecCCCCHHHHHHHHC-----CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCC
Confidence 6899999999999999887664 22379999999999999999999999763 89999999876542 246899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH-HHHHHHHHHc
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP-SQICLQMMEK 189 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~ 189 (256)
+||++||=+..... .. ...+.+++..+.++|+|||.+++++++.... +.+.+.+.+.
T Consensus 198 ~IIlDPPsF~k~~~-----~~----------~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 198 LIILDPPSFAKSKF-----DL----------ERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp EEEE--SSEESSTC-----EH----------HHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred EEEECCCCCCCCHH-----HH----------HHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 99999996642211 11 1246788999999999999999887765533 3455555444
No 121
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.47 E-value=1.4e-12 Score=106.32 Aligned_cols=112 Identities=17% Similarity=0.132 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~ 102 (256)
...++.+++..+. ..++.+|||+|||+|.++..++... ..++++|+++++++.+++++..+++.. ++..+
T Consensus 63 ~p~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~ 133 (212)
T PRK00312 63 QPYMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG 133 (212)
T ss_pred cHHHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC
Confidence 3445555655543 2578999999999999987766652 279999999999999999999888764 88999
Q ss_pred chhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 103 DIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 103 d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|..+.... .++||+|+++.+. ..+...+.+.|+|||++++..
T Consensus 134 d~~~~~~~--~~~fD~I~~~~~~---------------------------~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 134 DGWKGWPA--YAPFDRILVTAAA---------------------------PEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred CcccCCCc--CCCcCEEEEccCc---------------------------hhhhHHHHHhcCCCcEEEEEE
Confidence 98664332 3689999997542 233456678999999999854
No 122
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.47 E-value=6e-13 Score=112.59 Aligned_cols=111 Identities=15% Similarity=0.165 Sum_probs=81.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
....+|||+|||+|.++..++..+... ..+.++|+|+|+.+++.|+++. ....+..+|+.+. ++.+++||+|+
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-~~~~v~giD~s~~~l~~A~~~~----~~~~~~~~d~~~l--p~~~~sfD~I~ 156 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-TTMQLFGLDISKVAIKYAAKRY----PQVTFCVASSHRL--PFADQSLDAII 156 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-cCCeEEEECCCHHHHHHHHHhC----CCCeEEEeecccC--CCcCCceeEEE
Confidence 356889999999999988887764321 1357999999999999997653 1347888887764 34467999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+... ...+.++.++|||||+++++.+......++...+
T Consensus 157 ~~~~----------------------------~~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 157 RIYA----------------------------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred EecC----------------------------CCCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 8421 1225678899999999999887665544544443
No 123
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.47 E-value=4.7e-13 Score=123.13 Aligned_cols=172 Identities=16% Similarity=0.225 Sum_probs=109.2
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhccc----CCCceEEEEeCCHHHHHHHHHHH
Q 025211 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQE----VPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~----~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
..+|+|...++.+++++.+....-....+.+|||+|||+|.++++++..+... .-+..++|+|+++.++..++.++
T Consensus 4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45899987788888777654321001146799999999999999998876421 11368999999999999999998
Q ss_pred HHcC-CcceEEEcchhhchh---hhcCCCccEEEECCCCCCCCCcccccc---------c-------------------c
Q 025211 91 EAHN-VHADLINTDIASGLE---KRLAGLVDVMVVNPPYVPTPEDEVGRE---------G-------------------I 138 (256)
Q Consensus 91 ~~~~-~~~~~~~~d~~~~~~---~~~~~~fD~Ii~npP~~~~~~~~~~~~---------~-------------------~ 138 (256)
...+ ....+.+.|...... ....+.||+||+||||........... . +
T Consensus 84 ~~~~~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (524)
T TIGR02987 84 GEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDP 163 (524)
T ss_pred hhcCCCCceeeecccccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhh
Confidence 7765 223556555443211 111357999999999987543211000 0 0
Q ss_pred hhhhcCCCCcHHHHHHH-HHHHhhccccCeEEEEEEeCC----CCHHHHHHHHHHc
Q 025211 139 ASAWAGGENGRAVIDKI-LPSADKLLSKRGWLYLVTLTA----NDPSQICLQMMEK 189 (256)
Q Consensus 139 ~~~~~~~~~~~~~~~~~-l~~~~~~LkpgG~l~~~~~~~----~~~~~~~~~~~~~ 189 (256)
...+ .|.. ..+..+ ++.+.++|++||++.++.|.. .....+++.+.+.
T Consensus 164 ~~~~-~g~~--~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~ 216 (524)
T TIGR02987 164 IRKY-AGVG--TEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNN 216 (524)
T ss_pred hccc-CCcc--cHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhC
Confidence 0000 1111 123444 467899999999999988753 2334566666544
No 124
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.47 E-value=1.3e-12 Score=102.48 Aligned_cols=131 Identities=15% Similarity=0.167 Sum_probs=97.2
Q ss_pred ccC-CccccCCc--hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 13 SHP-EVYEPCDD--SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 13 ~~~-~~~~p~~~--~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+ ..++|+++ .+.+.+++.+ ++ .+.++||+.+|+|.++++++.. + ...++.+|.+..++..+++
T Consensus 16 ~p~~~~~RPT~drVREalFNil~~~~i------~g~~~LDlFAGSGaLGlEAlSR----G-A~~~~~vE~~~~a~~~l~~ 84 (187)
T COG0742 16 TPDGPGTRPTTDRVREALFNILAPDEI------EGARVLDLFAGSGALGLEALSR----G-AARVVFVEKDRKAVKILKE 84 (187)
T ss_pred CCCCCCcCCCchHHHHHHHHhcccccc------CCCEEEEecCCccHhHHHHHhC----C-CceEEEEecCHHHHHHHHH
Confidence 444 37889888 7777777776 34 7899999999999999998876 3 3489999999999999999
Q ss_pred HHHHcCCcc--eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH--Hhhcc
Q 025211 89 TLEAHNVHA--DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS--ADKLL 163 (256)
Q Consensus 89 ~~~~~~~~~--~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~L 163 (256)
|++..+... .++..|....+..... +.||+|+.+|||...-. .....+.. -...|
T Consensus 85 N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~--------------------~~~~~~~~~~~~~~L 144 (187)
T COG0742 85 NLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDPPYAKGLL--------------------DKELALLLLEENGWL 144 (187)
T ss_pred HHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCCCCccchh--------------------hHHHHHHHHHhcCCc
Confidence 999888543 8888898866544322 34999999999962110 01122222 35679
Q ss_pred ccCeEEEEEEe
Q 025211 164 SKRGWLYLVTL 174 (256)
Q Consensus 164 kpgG~l~~~~~ 174 (256)
+|+|.+++-+.
T Consensus 145 ~~~~~iv~E~~ 155 (187)
T COG0742 145 KPGALIVVEHD 155 (187)
T ss_pred CCCcEEEEEeC
Confidence 99999999543
No 125
>PRK06202 hypothetical protein; Provisional
Probab=99.46 E-value=9.9e-13 Score=108.70 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=74.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++..+.+.+++++|+|+|+++.|++.|+++....++ ++...+..... ..+++||+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~--~~~~~~~~~l~--~~~~~fD~V~ 134 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQAVSDELV--AEGERFDVVT 134 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCC--eEEEEeccccc--ccCCCccEEE
Confidence 4668999999999999888887665546677999999999999999887654443 34444433221 1357899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
++..+++.++.+ ...+++++.++++
T Consensus 135 ~~~~lhh~~d~~-------------------~~~~l~~~~r~~~ 159 (232)
T PRK06202 135 SNHFLHHLDDAE-------------------VVRLLADSAALAR 159 (232)
T ss_pred ECCeeecCChHH-------------------HHHHHHHHHHhcC
Confidence 998876655432 3567888888776
No 126
>PLN02476 O-methyltransferase
Probab=99.45 E-value=2.7e-12 Score=107.59 Aligned_cols=103 Identities=19% Similarity=0.283 Sum_probs=87.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CCC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~~ 115 (256)
++++|||+|||+|..++.++..+. ++..|+++|.++++++.|++|++..|+.. +++.+|+.+.++... .++
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~---~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~ 194 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLP---ESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS 194 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCC---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence 679999999999999999998753 35689999999999999999999999864 999999998876531 368
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+|+.+.+ ...+..+++.+.++|+|||.+++
T Consensus 195 FD~VFIDa~------------------------K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 195 YDFAFVDAD------------------------KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred CCEEEECCC------------------------HHHHHHHHHHHHHhcCCCcEEEE
Confidence 999999754 12367889999999999999887
No 127
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.45 E-value=4.1e-12 Score=111.08 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=100.8
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025211 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
++++... .+.+++++.+.+. ..+.+|||+|||+|.+++.++.. . ..|+|+|+++++++.|++|+..+++
T Consensus 175 F~Q~N~~~~~~l~~~v~~~~~----~~~~~vlDl~~G~G~~sl~la~~----~--~~v~~vE~~~~av~~a~~n~~~~~~ 244 (353)
T TIGR02143 175 FTQPNAAVNIKMLEWACEVTQ----GSKGDLLELYCGNGNFSLALAQN----F--RRVLATEIAKPSVNAAQYNIAANNI 244 (353)
T ss_pred cccCCHHHHHHHHHHHHHHhh----cCCCcEEEEeccccHHHHHHHHh----C--CEEEEEECCHHHHHHHHHHHHHcCC
Confidence 5666655 6677777777653 12357999999999999988876 2 2899999999999999999999998
Q ss_pred cc-eEEEcchhhchhhh-----c---C------CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025211 96 HA-DLINTDIASGLEKR-----L---A------GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~-----~---~------~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
.+ +++.+|+.+..... . . ..||+|+.|||.. . . ...+++.+.
T Consensus 245 ~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~---G------------------~--~~~~l~~l~ 301 (353)
T TIGR02143 245 DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA---G------------------L--DPDTCKLVQ 301 (353)
T ss_pred CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCCC---C------------------C--cHHHHHHHH
Confidence 65 89999998876431 0 1 2389999999942 0 0 234445443
Q ss_pred hccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025211 161 KLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 161 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
++++++|+++.+.+...++..+. .+|....+.
T Consensus 302 ---~~~~ivYvsC~p~tlaRDl~~L~--~~Y~l~~v~ 333 (353)
T TIGR02143 302 ---AYERILYISCNPETLKANLEQLS--ETHRVERFA 333 (353)
T ss_pred ---cCCcEEEEEcCHHHHHHHHHHHh--cCcEEEEEE
Confidence 37888888765555555655544 237665554
No 128
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.45 E-value=8.7e-12 Score=103.08 Aligned_cols=106 Identities=22% Similarity=0.323 Sum_probs=83.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ++.++++|+++.+++.+++++...+...+++..|+.+.... ..++||+|+
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~fD~Ii 119 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL------GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAE-HPGQFDVVT 119 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhh-cCCCccEEE
Confidence 46889999999999988766654 35899999999999999999887776567788887665322 347899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...+.+.++ ...+++.+.++|+|||++++..+
T Consensus 120 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 120 CMEMLEHVPD---------------------PASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred EhhHhhccCC---------------------HHHHHHHHHHHcCCCcEEEEEec
Confidence 9655443322 45789999999999999998654
No 129
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.44 E-value=5.9e-12 Score=119.24 Aligned_cols=139 Identities=20% Similarity=0.208 Sum_probs=97.6
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC------------------------------
Q 025211 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP------------------------------ 69 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~------------------------------ 69 (256)
|-+..+.++..++..-. +. .++..++|++||+|+++++++.+.....|
T Consensus 170 ~Apl~etlAaa~l~~a~-w~-~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~ 247 (702)
T PRK11783 170 EAPLKENLAAAILLRSG-WP-QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER 247 (702)
T ss_pred CCCCcHHHHHHHHHHcC-CC-CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence 45557888888876532 21 35789999999999999999986432111
Q ss_pred --------CceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccch
Q 025211 70 --------GVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIA 139 (256)
Q Consensus 70 --------~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~ 139 (256)
...++|+|+++.+++.|++|+..+|+.. .+.++|+.+...+...++||+|++||||......+.
T Consensus 248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~------ 321 (702)
T PRK11783 248 ARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEP------ 321 (702)
T ss_pred HhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchH------
Confidence 2369999999999999999999999864 788999988644433357999999999986433210
Q ss_pred hhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 140 SAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 140 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.-...+.. +....+...+|+.+++++.
T Consensus 322 -------~l~~lY~~-lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 322 -------ALIALYSQ-LGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -------HHHHHHHH-HHHHHHHhCCCCeEEEEeC
Confidence 00112333 3333344459999988764
No 130
>PRK00811 spermidine synthase; Provisional
Probab=99.44 E-value=5.1e-12 Score=107.35 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C----cceEEEcchhhchhhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V----HADLINTDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~----~~~~~~~d~~~~~~~~~~~ 114 (256)
..+++||++|||+|..+.++++. .+..+|+++|+++++++.|++.+.... . ..+++.+|+...+.. .++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~----~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-~~~ 149 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKH----PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-TEN 149 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcC----CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-CCC
Confidence 45789999999999987666543 234589999999999999999886532 1 238999999887654 457
Q ss_pred CccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 115 LVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||+|+++. |+.... ......+++.+.+.|+|||++++..
T Consensus 150 ~yDvIi~D~~dp~~~~~-------------------~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAE-------------------GLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred cccEEEECCCCCCCchh-------------------hhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 899999974 331100 1124688899999999999998743
No 131
>PRK05785 hypothetical protein; Provisional
Probab=99.44 E-value=3.3e-12 Score=105.02 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=71.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||||.++..++.. . +.+|+|+|+|++|++.|++.. ..+++|+.+. ++.+++||+|++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~----~-~~~v~gvD~S~~Ml~~a~~~~-------~~~~~d~~~l--p~~d~sfD~v~~ 116 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKV----F-KYYVVALDYAENMLKMNLVAD-------DKVVGSFEAL--PFRDKSFDVVMS 116 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHh----c-CCEEEEECCCHHHHHHHHhcc-------ceEEechhhC--CCCCCCEEEEEe
Confidence 4789999999999988777765 3 458999999999999987641 4567887765 455789999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
+....+.++ .+.+++++.++|||.
T Consensus 117 ~~~l~~~~d---------------------~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 117 SFALHASDN---------------------IEKVIAEFTRVSRKQ 140 (226)
T ss_pred cChhhccCC---------------------HHHHHHHHHHHhcCc
Confidence 866543332 578899999999995
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.44 E-value=1.1e-12 Score=106.22 Aligned_cols=114 Identities=21% Similarity=0.286 Sum_probs=85.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD 103 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d 103 (256)
-.++..+++.+. -+++.+|||+|||+|..+..++.+++ +...|+++|.++..++.|++++...+..+ .++.+|
T Consensus 58 P~~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg---~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd 131 (209)
T PF01135_consen 58 PSMVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVG---PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD 131 (209)
T ss_dssp HHHHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHS---TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred HHHHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcC---ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence 455666677665 26899999999999999988888764 34589999999999999999999999876 999999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.....+. .+.||.|+++... ..+-..+.+.|++||++++..
T Consensus 132 g~~g~~~--~apfD~I~v~~a~---------------------------~~ip~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 132 GSEGWPE--EAPFDRIIVTAAV---------------------------PEIPEALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGGTTGG--G-SEEEEEESSBB---------------------------SS--HHHHHTEEEEEEEEEEE
T ss_pred hhhcccc--CCCcCEEEEeecc---------------------------chHHHHHHHhcCCCcEEEEEE
Confidence 8877554 4789999996432 122344556799999999854
No 133
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.44 E-value=6.3e-13 Score=111.76 Aligned_cols=127 Identities=24% Similarity=0.314 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccC-----CCceEEEEeCCHHHHHHHHHHHHH----c
Q 025211 24 SFALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEV-----PGVQYIATDINPYAVEVTRKTLEA----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~-----~~~~v~giD~~~~~i~~a~~~~~~----~ 93 (256)
...+.+.+++.+.. ....++.+|||+|||||.-+..++..+.+.. ++..|+|+|+|+.|++.|++.+.. .
T Consensus 80 ~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~ 159 (264)
T smart00138 80 FEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELE 159 (264)
T ss_pred HHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHh
Confidence 45566666655421 1123568999999999975444443332222 257899999999999999985410 0
Q ss_pred CC------------------------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025211 94 NV------------------------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 94 ~~------------------------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
++ ...+.++|+.+... ..++||+|+|.-.+++.+.
T Consensus 160 ~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~yf~~------------------- 218 (264)
T smart00138 160 DLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIYFDE------------------- 218 (264)
T ss_pred cCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHhCCH-------------------
Confidence 11 12677888877532 3578999999543332221
Q ss_pred HHHHHHHHHHhhccccCeEEEE
Q 025211 150 AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
.....++..+++.|+|||++++
T Consensus 219 ~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 219 PTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEE
Confidence 1256899999999999999998
No 134
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.7e-12 Score=115.50 Aligned_cols=155 Identities=20% Similarity=0.209 Sum_probs=118.9
Q ss_pred eeeeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025211 9 RLVSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 9 ~~~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
-.+.+.+ ++|++.+. .+.|++++++.+.. .++.+|||+-||.|.+++.+|+. ..+|+|+|+++++++.|
T Consensus 261 ~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~---~~~~~vlDlYCGvG~f~l~lA~~------~~~V~gvEi~~~aV~~A 331 (432)
T COG2265 261 VSFQISPRSFFQVNPAVAEKLYETALEWLEL---AGGERVLDLYCGVGTFGLPLAKR------VKKVHGVEISPEAVEAA 331 (432)
T ss_pred eEEEeCCCCceecCHHHHHHHHHHHHHHHhh---cCCCEEEEeccCCChhhhhhccc------CCEEEEEecCHHHHHHH
Confidence 3455777 79999988 88899998888753 46789999999999999998865 34899999999999999
Q ss_pred HHHHHHcCCcc-eEEEcchhhchhhhc-CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 87 RKTLEAHNVHA-DLINTDIASGLEKRL-AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 87 ~~~~~~~~~~~-~~~~~d~~~~~~~~~-~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
++|++.|++.+ .+..++..+...... ...+|.|+.|||= .|. -..+++.+.+ ++
T Consensus 332 ~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR---------------------~G~--~~~~lk~l~~-~~ 387 (432)
T COG2265 332 QENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPR---------------------AGA--DREVLKQLAK-LK 387 (432)
T ss_pred HHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEECCCC---------------------CCC--CHHHHHHHHh-cC
Confidence 99999999986 899999998876542 3578999999992 111 1355666654 78
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025211 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|..++++++.+.+...+ .+.+.+.|+.+..+.
T Consensus 388 p~~IvYVSCNP~TlaRD-l~~L~~~gy~i~~v~ 419 (432)
T COG2265 388 PKRIVYVSCNPATLARD-LAILASTGYEIERVQ 419 (432)
T ss_pred CCcEEEEeCCHHHHHHH-HHHHHhCCeEEEEEE
Confidence 99999997665554444 445556777655444
No 135
>PLN03075 nicotianamine synthase; Provisional
Probab=99.43 E-value=3.9e-12 Score=107.21 Aligned_cols=108 Identities=20% Similarity=0.250 Sum_probs=81.3
Q ss_pred CCCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcc--eEEEcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.++++|+|+|||.|-++ +.++. +.+|+++++++|+++++++.|++.+.. .++.. +|+.+|+.+.... .+.|
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa---~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~--l~~F 196 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAK---HHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTES--LKEY 196 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHH---hcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccc--cCCc
Confidence 37899999999977443 22222 226888999999999999999999964 56643 9999999885322 3689
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|++. ..+..... ...++++.+.+.|+|||.+++-.
T Consensus 197 DlVF~~-ALi~~dk~-------------------~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 197 DVVFLA-ALVGMDKE-------------------EKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred CEEEEe-cccccccc-------------------cHHHHHHHHHHhcCCCcEEEEec
Confidence 999996 33222111 16799999999999999999844
No 136
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.43 E-value=1.5e-12 Score=105.88 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-----------
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA----------- 92 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~----------- 92 (256)
...+++++.... ..++.+|||+|||.|..++.++.. +.+|+|+|+|+.+++.+......
T Consensus 20 ~~~l~~~~~~l~----~~~~~rvLd~GCG~G~da~~LA~~------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~ 89 (213)
T TIGR03840 20 NPLLVKHWPALG----LPAGARVFVPLCGKSLDLAWLAEQ------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFT 89 (213)
T ss_pred CHHHHHHHHhhC----CCCCCeEEEeCCCchhHHHHHHhC------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccce
Confidence 455666544321 136689999999999998888875 67999999999999976332110
Q ss_pred --cCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 93 --HNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 93 --~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.+...++.++|+.+.... ..+.||.|+..-.+.+.+. .....+++.+.++|||||+++
T Consensus 90 ~~~~~~v~~~~~D~~~~~~~-~~~~fD~i~D~~~~~~l~~-------------------~~R~~~~~~l~~lLkpgG~~l 149 (213)
T TIGR03840 90 RYRAGNIEIFCGDFFALTAA-DLGPVDAVYDRAALIALPE-------------------EMRQRYAAHLLALLPPGARQL 149 (213)
T ss_pred eeecCceEEEEccCCCCCcc-cCCCcCEEEechhhccCCH-------------------HHHHHHHHHHHHHcCCCCeEE
Confidence 012347889999876432 1357999987544443322 235788999999999999876
Q ss_pred EEEe
Q 025211 171 LVTL 174 (256)
Q Consensus 171 ~~~~ 174 (256)
+++.
T Consensus 150 l~~~ 153 (213)
T TIGR03840 150 LITL 153 (213)
T ss_pred EEEE
Confidence 6543
No 137
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.42 E-value=4.9e-12 Score=102.17 Aligned_cols=117 Identities=23% Similarity=0.294 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eE
Q 025211 22 DDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DL 99 (256)
Q Consensus 22 ~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~ 99 (256)
+++..+...+... ..+++|||+|++.|..++.++..+.. +++++++|.++++++.|++|+++.|+.. .+
T Consensus 45 ~e~g~~L~~L~~~------~~~k~iLEiGT~~GySal~mA~~l~~---~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~ 115 (219)
T COG4122 45 PETGALLRLLARL------SGPKRILEIGTAIGYSALWMALALPD---DGRLTTIERDEERAEIARENLAEAGVDDRIEL 115 (219)
T ss_pred hhHHHHHHHHHHh------cCCceEEEeecccCHHHHHHHhhCCC---CCeEEEEeCCHHHHHHHHHHHHHcCCcceEEE
Confidence 4455555555554 37899999999999999999998532 6699999999999999999999999876 56
Q ss_pred EE-cchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 100 IN-TDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 100 ~~-~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+. +|..+.+.....++||+|+.+- +...+..+++.+.++|+|||.+++
T Consensus 116 ~~~gdal~~l~~~~~~~fDliFIDa------------------------dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 116 LLGGDALDVLSRLLDGSFDLVFIDA------------------------DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred EecCcHHHHHHhccCCCccEEEEeC------------------------ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 67 5888887664568999999852 112367899999999999999997
No 138
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.42 E-value=1.3e-11 Score=101.64 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=77.5
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchh
Q 025211 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~ 105 (256)
.+.+++.+......++.+|||+|||+|.++..++.. +..++|+|+++.+++.|++++...+. ...+..+|+.
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 122 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE 122 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch
Confidence 344444443211246789999999999998877764 34799999999999999999887766 3378888843
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
. ..++||+|++.-.+.+.+.+ ....++..+.+.+++++.+.
T Consensus 123 ~-----~~~~fD~v~~~~~l~~~~~~-------------------~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 123 S-----LLGRFDTVVCLDVLIHYPQE-------------------DAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred h-----ccCCcCEEEEcchhhcCCHH-------------------HHHHHHHHHHhhcCCeEEEE
Confidence 2 24689999997655433221 14566777777665444433
No 139
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.42 E-value=1.8e-12 Score=103.83 Aligned_cols=122 Identities=21% Similarity=0.224 Sum_probs=85.2
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+..++. ..+.+.+ +++.+|+|+.||.|.+++.+++. .....|+|+|++|.+++.+++|+
T Consensus 77 ~D~~kvyfs~rl~~Er--~Ri~~~v-----~~~e~VlD~faGIG~f~l~~ak~----~~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 77 VDLSKVYFSPRLSTER--RRIANLV-----KPGEVVLDMFAGIGPFSLPIAKH----GKAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp EETTTS---GGGHHHH--HHHHTC-------TT-EEEETT-TTTTTHHHHHHH----T-SSEEEEEES-HHHHHHHHHHH
T ss_pred EccceEEEccccHHHH--HHHHhcC-----CcceEEEEccCCccHHHHHHhhh----cCccEEEEecCCHHHHHHHHHHH
Confidence 4555557777755444 3444443 57899999999999999999985 44668999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025211 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. .++++|..+... ...+|-|++|.|.. ...++..+..++++||+
T Consensus 146 ~lNkv~~~i~~~~~D~~~~~~---~~~~drvim~lp~~-------------------------~~~fl~~~~~~~~~~g~ 197 (200)
T PF02475_consen 146 RLNKVENRIEVINGDAREFLP---EGKFDRVIMNLPES-------------------------SLEFLDAALSLLKEGGI 197 (200)
T ss_dssp HHTT-TTTEEEEES-GGG------TT-EEEEEE--TSS-------------------------GGGGHHHHHHHEEEEEE
T ss_pred HHcCCCCeEEEEcCCHHHhcC---ccccCEEEECChHH-------------------------HHHHHHHHHHHhcCCcE
Confidence 9999876 789999988865 47899999998853 34678888899999998
Q ss_pred EEE
Q 025211 169 LYL 171 (256)
Q Consensus 169 l~~ 171 (256)
+.+
T Consensus 198 ihy 200 (200)
T PF02475_consen 198 IHY 200 (200)
T ss_dssp EEE
T ss_pred EEC
Confidence 753
No 140
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.42 E-value=1.8e-12 Score=101.78 Aligned_cols=117 Identities=18% Similarity=0.149 Sum_probs=86.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|||+|||||..--.+ .+ -|..+|+++|.++.|-+.+.+.+.++.... .++.++..+.. ...++++|.|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy-~~----~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~-~l~d~s~DtVV 150 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFY-PW----KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLP-QLADGSYDTVV 150 (252)
T ss_pred ccceEEecccCCCCcccc-cC----CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCc-ccccCCeeeEE
Confidence 356799999999863211 11 367899999999999999999998875433 58899987763 34579999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+........+ ..+.|.+..++|+|||+++++.+...........+
T Consensus 151 ~TlvLCSve~---------------------~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~ 195 (252)
T KOG4300|consen 151 CTLVLCSVED---------------------PVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRIL 195 (252)
T ss_pred EEEEEeccCC---------------------HHHHHHHHHHhcCCCcEEEEEecccccchHHHHHH
Confidence 9654432222 56889999999999999999987665444333333
No 141
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.42 E-value=8.2e-12 Score=102.52 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=81.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.+|||+|||+|.++..+++. +..++++|+++.+++.+++++..++. ..++...|+.+.... .+++||+|+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~i~ 117 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-GAKSFDVVT 117 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-CCCCccEEE
Confidence 4789999999999988776654 24699999999999999999888776 358888888766432 146899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++..+.+..+ ...++..+.++|++||.+++...
T Consensus 118 ~~~~l~~~~~---------------------~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 118 CMEVLEHVPD---------------------PQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred ehhHHHhCCC---------------------HHHHHHHHHHhcCCCcEEEEEec
Confidence 9654332221 46789999999999999988654
No 142
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.41 E-value=6.5e-12 Score=99.57 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=103.6
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+.+..++.+. ++..++.-|||||||+|..+-.+. .++...+|+|||+.|++.|.+.- +..+++.+|+
T Consensus 34 ~em~eRaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~------~~Gh~wiGvDiSpsML~~a~~~e----~egdlil~DM 102 (270)
T KOG1541|consen 34 AEMAERALELLA-LPGPKSGLILDIGCGSGLSGSVLS------DSGHQWIGVDISPSMLEQAVERE----LEGDLILCDM 102 (270)
T ss_pred HHHHHHHHHHhh-CCCCCCcEEEEeccCCCcchheec------cCCceEEeecCCHHHHHHHHHhh----hhcCeeeeec
Confidence 445555666543 333467899999999999653332 24568999999999999998632 1248999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHH
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQI 182 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~ 182 (256)
.+.+ ++.+++||-+|+-.......+.....+.+. ..+..|+..++.+|++|++.++-....+ +.+.+
T Consensus 103 G~Gl-pfrpGtFDg~ISISAvQWLcnA~~s~~~P~----------~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i 171 (270)
T KOG1541|consen 103 GEGL-PFRPGTFDGVISISAVQWLCNADKSLHVPK----------KRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMI 171 (270)
T ss_pred CCCC-CCCCCccceEEEeeeeeeecccCccccChH----------HHHHHHhhhhhhhhccCceeEEEecccchHHHHHH
Confidence 8765 556899999998433222222222222222 2367889999999999999998554333 23355
Q ss_pred HHHHHHcCCc--EEEEEecCCCCccEE
Q 025211 183 CLQMMEKGYA--ARIVVQRSTEEENLH 207 (256)
Q Consensus 183 ~~~~~~~g~~--~~~~~~~~~~~~~~~ 207 (256)
.....+.||. +.+-++.......++
T Consensus 172 ~~~a~~aGF~GGlvVd~Pes~k~kK~y 198 (270)
T KOG1541|consen 172 MQQAMKAGFGGGLVVDWPESTKNKKYY 198 (270)
T ss_pred HHHHHhhccCCceeeecccccccceeE
Confidence 6666667775 344444433333333
No 143
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.41 E-value=1.2e-12 Score=114.47 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=70.8
Q ss_pred eeccC-CccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 11 VSSHP-EVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~-~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+.+.| +++++.+. .+.+++++++.+.. .+.+|||+.||+|.+++.++... ..|+|+|+++.+++.|++
T Consensus 167 ~~~~~~sFfQvN~~~~~~l~~~~~~~l~~----~~~~vlDlycG~G~fsl~la~~~------~~V~gvE~~~~av~~A~~ 236 (352)
T PF05958_consen 167 FRISPGSFFQVNPEQNEKLYEQALEWLDL----SKGDVLDLYCGVGTFSLPLAKKA------KKVIGVEIVEEAVEDARE 236 (352)
T ss_dssp EEEETTS---SBHHHHHHHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCS------SEEEEEES-HHHHHHHHH
T ss_pred EEECCCcCccCcHHHHHHHHHHHHHHhhc----CCCcEEEEeecCCHHHHHHHhhC------CeEEEeeCCHHHHHHHHH
Confidence 34444 48888887 88888888887642 23389999999999999988762 389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhh--------------cCCCccEEEECCC
Q 025211 89 TLEAHNVHA-DLINTDIASGLEKR--------------LAGLVDVMVVNPP 124 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~--------------~~~~fD~Ii~npP 124 (256)
|+..|++++ +++.++..+..... ....+|+|+.+||
T Consensus 237 Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 237 NAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp HHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 999999987 88887766543211 1236899999999
No 144
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=99.40 E-value=8.9e-12 Score=104.99 Aligned_cols=182 Identities=16% Similarity=0.255 Sum_probs=85.6
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccC--CCCEEEEecccccHH-HHHHHHHhcccCCCceEEEEeCCH
Q 025211 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEH--HPVLCMEVGCGSGYV-ITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~--~~~~VLDlGcG~G~~-~~~l~~~l~~~~~~~~v~giD~~~ 80 (256)
.+++..-++.++.+.|... +.-++-|+.+.+...... ...++||||||..++ ++-.++ ..+|+++|+|+++
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~-----~~~W~fvaTdID~ 136 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAK-----LYGWSFVATDIDP 136 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHH-----HH--EEEEEES-H
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhh-----hcCCeEEEecCCH
Confidence 4555544788999999887 556667777766542211 257999999999986 222222 2489999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEEcc----hhhchhhhcCCCccEEEECCCCCCCCCcccc---cc------------cc
Q 025211 81 YAVEVTRKTLEAH-NVHA--DLINTD----IASGLEKRLAGLVDVMVVNPPYVPTPEDEVG---RE------------GI 138 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~~d----~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~---~~------------~~ 138 (256)
.+++.|++|+..| ++.. .++... +...... ..+.||+.+|||||+.+.++... ++ .+
T Consensus 137 ~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~-~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p 215 (299)
T PF05971_consen 137 KSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ-PNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPP 215 (299)
T ss_dssp HHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT---S-EEEEEE-----SS-------------------------
T ss_pred HHHHHHHHHHHhccccccceEEEEcCCccccchhhhc-ccceeeEEecCCccccChhhhcccccccccccccccccccCc
Confidence 9999999999999 7765 444332 2222221 24689999999999988764221 01 12
Q ss_pred hhhhcCCCC-------cHHHHHHHHHHHhhccccC-eEEEEEEeCCCCHHHHHHHHHHcCCcE
Q 025211 139 ASAWAGGEN-------GRAVIDKILPSADKLLSKR-GWLYLVTLTANDPSQICLQMMEKGYAA 193 (256)
Q Consensus 139 ~~~~~~~~~-------~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~~~~~~~~~~~~~~~g~~~ 193 (256)
...+.|... ...+..+++++...+ +.. .++--..........+.+.+++.+...
T Consensus 216 ~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~-~~~v~WfTsmvgKkssL~~l~~~L~~~~~~~ 277 (299)
T PF05971_consen 216 KLNFTGQSNELWCEGGEVAFVKRMIKESLQL-KDQVRWFTSMVGKKSSLKPLKKELKKLGATN 277 (299)
T ss_dssp -------TTTTHHHHTHHHHHHHHHHHHHHH-GGGEEEEEEEESSGGGHHHHHHHHHHTT-SE
T ss_pred cccCCCCcceEEcCCccHHHHHHHHHHHHHh-CCCcEEEeecccCcccHHHHHHHHHhcCCce
Confidence 222222111 122566777776643 332 222222223445678888888887654
No 145
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=4.5e-12 Score=99.69 Aligned_cols=78 Identities=21% Similarity=0.144 Sum_probs=63.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..++.. +.+++++|+++.+++.+++++... .+.+++++|+.+...+ +..||.|+
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~------~~~v~~vE~~~~~~~~~~~~~~~~-~~v~ii~~D~~~~~~~--~~~~d~vi 82 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLER------AARVTAIEIDPRLAPRLREKFAAA-DNLTVIHGDALKFDLP--KLQPYKVV 82 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhc------CCeEEEEECCHHHHHHHHHHhccC-CCEEEEECchhcCCcc--ccCCCEEE
Confidence 46789999999999998887765 358999999999999999987542 1348999999887432 34699999
Q ss_pred ECCCCCC
Q 025211 121 VNPPYVP 127 (256)
Q Consensus 121 ~npP~~~ 127 (256)
+||||+.
T Consensus 83 ~n~Py~~ 89 (169)
T smart00650 83 GNLPYNI 89 (169)
T ss_pred ECCCccc
Confidence 9999963
No 146
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.40 E-value=2.7e-11 Score=108.96 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=107.4
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025211 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.|.....+.+++..++.. ...++.+|||+|+|.|.-+..++..+.. +..|++.|+++..++.+++|+.+.|
T Consensus 90 ~G~~yvQd~sS~l~~~~L~~----~~~pg~~VLD~CAAPGgKTt~la~~l~~---~g~lvA~D~~~~R~~~L~~nl~r~G 162 (470)
T PRK11933 90 SGLFYIQEASSMLPVAALFA----DDNAPQRVLDMAAAPGSKTTQIAALMNN---QGAIVANEYSASRVKVLHANISRCG 162 (470)
T ss_pred CCcEEEECHHHHHHHHHhcc----CCCCCCEEEEeCCCccHHHHHHHHHcCC---CCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 34444454455555544421 1258899999999999999999998752 3589999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEE
Q 025211 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
+.+ .+.+.|...... ...+.||.|++++|-.-..- .++.+...+.-. ..-......+|..+.++|||||++
T Consensus 163 ~~nv~v~~~D~~~~~~-~~~~~fD~ILvDaPCSG~G~---~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~L 238 (470)
T PRK11933 163 VSNVALTHFDGRVFGA-ALPETFDAILLDAPCSGEGT---VRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTL 238 (470)
T ss_pred CCeEEEEeCchhhhhh-hchhhcCeEEEcCCCCCCcc---cccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEE
Confidence 876 777888765432 23467999999999653322 122222222110 001124678899999999999999
Q ss_pred EEEEeCCCC
Q 025211 170 YLVTLTAND 178 (256)
Q Consensus 170 ~~~~~~~~~ 178 (256)
+.++++...
T Consensus 239 VYSTCT~~~ 247 (470)
T PRK11933 239 VYSTCTLNR 247 (470)
T ss_pred EEECCCCCH
Confidence 999998663
No 147
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=2.9e-12 Score=116.74 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=90.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.+++... ......++++|+.....++.+++||+|+
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~------~~~v~giD~s~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~ 108 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKK------AGQVIALDFIESVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIF 108 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhh------CCEEEEEeCCHHHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEe
Confidence 45689999999999999888875 2389999999999987654221 1112378889986543344457899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
++.++++.++.+ ...+++++.++|||||++++..... .......+.
T Consensus 109 ~~~~l~~l~~~~-------------------~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (475)
T PLN02336 109 SNWLLMYLSDKE-------------------VENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTKV 169 (475)
T ss_pred hhhhHHhCCHHH-------------------HHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHHH
Confidence 998876554322 5788999999999999998854211 123456667
Q ss_pred HHHcCCc
Q 025211 186 MMEKGYA 192 (256)
Q Consensus 186 ~~~~g~~ 192 (256)
+.+.++.
T Consensus 170 f~~~~~~ 176 (475)
T PLN02336 170 FKECHTR 176 (475)
T ss_pred HHHheec
Confidence 7776654
No 148
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.39 E-value=3.9e-12 Score=103.86 Aligned_cols=122 Identities=18% Similarity=0.218 Sum_probs=96.9
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhhcCC-CccEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKRLAG-LVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~-~fD~Ii 120 (256)
...+||||||.|.+++.+|+. .|+..++|||+....+..|.+.+.+.++ +..+++.|+...+..+.++ +.|-|.
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~----nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~ 124 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKK----NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIY 124 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHH----CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEE
Confidence 368999999999999998888 9999999999999999999999999999 5699999999998776655 999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
.|.| .| |++.++. +..-+...+++.+.+.|+|||.+.+.+......++
T Consensus 125 i~FP---DP-------WpKkRH~---KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~ 172 (227)
T COG0220 125 INFP---DP-------WPKKRHH---KRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW 172 (227)
T ss_pred EECC---CC-------CCCcccc---ccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence 9865 11 1122111 11223678999999999999999997654433333
No 149
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.39 E-value=7.1e-12 Score=108.14 Aligned_cols=136 Identities=20% Similarity=0.209 Sum_probs=101.5
Q ss_pred CCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----------------------------Cc-
Q 025211 21 CDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----------------------------GV- 71 (256)
Q Consensus 21 ~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~----------------------------~~- 71 (256)
-+.-+.|+..++..-. + .++..++|+-||+|+++|++|.+....-| .+
T Consensus 173 ApLketLAaAil~lag-w--~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 173 APLKETLAAAILLLAG-W--KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCchHHHHHHHHHHcC-C--CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 3446777777766433 2 35579999999999999999988532222 11
Q ss_pred ------eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhc
Q 025211 72 ------QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWA 143 (256)
Q Consensus 72 ------~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~ 143 (256)
.++|+|+++.+++.|+.|....|+.. .|.++|+.....++ +.+|+|||||||...-..+.
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~--~~~gvvI~NPPYGeRlg~~~---------- 317 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPL--EEYGVVISNPPYGERLGSEA---------- 317 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC--CcCCEEEeCCCcchhcCChh----------
Confidence 37799999999999999999999875 99999998876553 78999999999975333210
Q ss_pred CCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 144 GGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 144 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
--...+..+.+.+.+.++-.++.++++.
T Consensus 318 ---~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 318 ---LVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred ---hHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 0112467778888899999899888653
No 150
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.38 E-value=6.9e-12 Score=101.19 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=84.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc----CCC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL----AGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~----~~~ 115 (256)
.+++|||+||++|..++.++..+. ++++|+.+|++++..+.|++++...|+.. +++.+|+.+.++... .+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~---~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~ 121 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALP---EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ 121 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTST---TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred CCceEEEeccccccHHHHHHHhhc---ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence 679999999999999999998753 36799999999999999999999998864 899999998876532 257
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+|+.+-. ...+..+++.+.++|+|||.+++
T Consensus 122 fD~VFiDa~------------------------K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 122 FDFVFIDAD------------------------KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp EEEEEEEST------------------------GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEEEccc------------------------ccchhhHHHHHhhhccCCeEEEE
Confidence 999999632 11267888888999999999998
No 151
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.38 E-value=1.2e-11 Score=106.35 Aligned_cols=113 Identities=14% Similarity=0.214 Sum_probs=84.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.+...+++.+. ..++.+|||+|||+|.++..+++... ....|+++|+++++++.|++++..++.+. .++++|+
T Consensus 67 ~l~a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~---~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~ 140 (322)
T PRK13943 67 SLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVG---EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDG 140 (322)
T ss_pred HHHHHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcC---CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCh
Confidence 34444555432 24678999999999999988887642 23479999999999999999999888765 8888998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... .++||+|+++.. ...+...+.+.|+|||++++..
T Consensus 141 ~~~~~~--~~~fD~Ii~~~g---------------------------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 141 YYGVPE--FAPYDVIFVTVG---------------------------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hhcccc--cCCccEEEECCc---------------------------hHHhHHHHHHhcCCCCEEEEEe
Confidence 765433 257999999532 2233455677899999988854
No 152
>PRK01581 speE spermidine synthase; Validated
Probab=99.38 E-value=1.4e-10 Score=100.17 Aligned_cols=136 Identities=14% Similarity=0.173 Sum_probs=91.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-----HcCC---cceEEEcchhhchhhhc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-----AHNV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-----~~~~---~~~~~~~d~~~~~~~~~ 112 (256)
..+++||++|||+|..+.++.+. .+..+|+++|+++++++.|++... .... ..+++.+|+.+.+.. .
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~----~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~ 223 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY----ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-P 223 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc----CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-c
Confidence 35689999999999976555543 344689999999999999996321 1112 238899999987654 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----HHHHHHHHH
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----SQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~ 188 (256)
.++||+|+++.|-...... .......+++.+.+.|+|||+++....+.... ..+.+.+++
T Consensus 224 ~~~YDVIIvDl~DP~~~~~----------------~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~ 287 (374)
T PRK01581 224 SSLYDVIIIDFPDPATELL----------------STLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEH 287 (374)
T ss_pred CCCccEEEEcCCCccccch----------------hhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHH
Confidence 5689999999753111000 01124678999999999999988754322222 234566677
Q ss_pred cCCcEEEEE
Q 025211 189 KGYAARIVV 197 (256)
Q Consensus 189 ~g~~~~~~~ 197 (256)
.++......
T Consensus 288 af~~v~~y~ 296 (374)
T PRK01581 288 AGLTVKSYH 296 (374)
T ss_pred hCCceEEEE
Confidence 777665443
No 153
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=5.6e-12 Score=100.44 Aligned_cols=110 Identities=20% Similarity=0.247 Sum_probs=85.9
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcch
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~ 104 (256)
.++..+++.+. ..++.+|||||||+|..+..+++..+ +|+++|..+...+.|++|+...|..+ .+.++|.
T Consensus 59 ~~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~------~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG 129 (209)
T COG2518 59 HMVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG------RVVSIERIEELAEQARRNLETLGYENVTVRHGDG 129 (209)
T ss_pred HHHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC------eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc
Confidence 34455555543 36899999999999999888888732 89999999999999999999999865 9999999
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....++ .+.||.|+..-- ...+-+.+.+-||+||++++..
T Consensus 130 ~~G~~~--~aPyD~I~Vtaa---------------------------a~~vP~~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 130 SKGWPE--EAPYDRIIVTAA---------------------------APEVPEALLDQLKPGGRLVIPV 169 (209)
T ss_pred ccCCCC--CCCcCEEEEeec---------------------------cCCCCHHHHHhcccCCEEEEEE
Confidence 887655 378999998422 1222344556799999999843
No 154
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.36 E-value=1.7e-11 Score=96.54 Aligned_cols=145 Identities=19% Similarity=0.250 Sum_probs=92.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-.++||+|||+|.++..++..+. .++++|+++.+++.|+++.... -..++++.|+.+..+ +++||+|+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd------~LlavDis~~Al~~Ar~Rl~~~-~~V~~~~~dvp~~~P---~~~FDLIV 111 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCD------RLLAVDISPRALARARERLAGL-PHVEWIQADVPEFWP---EGRFDLIV 111 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEE------EEEEEES-HHHHHHHHHHTTT--SSEEEEES-TTT------SS-EEEEE
T ss_pred cccceeEecCCCccHHHHHHHHhhC------ceEEEeCCHHHHHHHHHhcCCC-CCeEEEECcCCCCCC---CCCeeEEE
Confidence 4558999999999999888877643 7999999999999999987632 134999999977643 48999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------CCHHHHHHHHHHcCC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------NDPSQICLQMMEKGY 191 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------~~~~~~~~~~~~~g~ 191 (256)
+.=..+...+ ...+..++..+...|+|||.+++-+... ...+.+...+.+.-.
T Consensus 112 ~SEVlYYL~~------------------~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~ 173 (201)
T PF05401_consen 112 LSEVLYYLDD------------------AEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLT 173 (201)
T ss_dssp EES-GGGSSS------------------HHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSE
T ss_pred EehHhHcCCC------------------HHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhh
Confidence 8432222111 2236788999999999999999966321 123455666655433
Q ss_pred cEEEE-EecCCCCccEEEEEEEe
Q 025211 192 AARIV-VQRSTEEENLHIIKFWR 213 (256)
Q Consensus 192 ~~~~~-~~~~~~~~~~~l~~~~~ 213 (256)
++..+ .......+...+..+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PF05401_consen 174 EVERVECRGGSPNEDCLLARFRN 196 (201)
T ss_dssp EEEEEEEE-SSTTSEEEEEEEE-
T ss_pred heeEEEEcCCCCCCceEeeeecC
Confidence 33333 23444556666666655
No 155
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.36 E-value=1.4e-11 Score=96.79 Aligned_cols=102 Identities=16% Similarity=0.219 Sum_probs=74.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.+|||+|||.|.++..+.. ..++..+|+|++++.+..+.++ |+ .++++|+.+.+..+.+++||.||
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~-----~k~v~g~GvEid~~~v~~cv~r----Gv--~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKD-----EKQVDGYGVEIDPDNVAACVAR----GV--SVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHH-----hcCCeEEEEecCHHHHHHHHHc----CC--CEEECCHHHhHhhCCCCCccEEe
Confidence 4789999999999997544433 2478999999999998877654 32 79999999999888899999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++-. .+....--.-+.++|+-|...+++.|++.
T Consensus 81 lsqt------------------------LQ~~~~P~~vL~EmlRVgr~~IVsFPNFg 113 (193)
T PF07021_consen 81 LSQT------------------------LQAVRRPDEVLEEMLRVGRRAIVSFPNFG 113 (193)
T ss_pred hHhH------------------------HHhHhHHHHHHHHHHHhcCeEEEEecChH
Confidence 9521 11112222234455777888888776654
No 156
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=6.3e-12 Score=102.65 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=75.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----------------cceEEEcch
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----------------HADLINTDI 104 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----------------~~~~~~~d~ 104 (256)
.++.+|||+|||.|..++.++.. +++|+|+|+++.+++.+.. ++++ ..++.++|+
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~------G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ------GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC------CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcc
Confidence 35689999999999998888875 6799999999999997642 2221 237788998
Q ss_pred hhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+.... ....||.|+.---+.+.+. .....++..+.++|+|||++++++
T Consensus 107 ~~l~~~-~~~~fd~v~D~~~~~~l~~-------------------~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 107 FALTAA-DLADVDAVYDRAALIALPE-------------------EMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCCCcc-cCCCeeEEEehHhHhhCCH-------------------HHHHHHHHHHHHHcCCCCeEEEEE
Confidence 876432 2257999986433332221 236788999999999999755534
No 157
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.35 E-value=5.8e-11 Score=100.33 Aligned_cols=112 Identities=19% Similarity=0.209 Sum_probs=82.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--C---cceEEEcchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--V---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||+|.++..+++. .+..+++++|+++++++.+++++...+ . ..+++.+|..+.+.. .+++
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~----~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~ 145 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKH----KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENT 145 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhC----CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CCCC
Confidence 35679999999999987666554 334589999999999999999875432 1 227788888776543 2578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
||+|+++++....+.. ......+++.+.+.|+|||++++...
T Consensus 146 yDvIi~D~~~~~~~~~-----------------~l~~~ef~~~~~~~L~pgG~lv~~~~ 187 (270)
T TIGR00417 146 FDVIIVDSTDPVGPAE-----------------TLFTKEFYELLKKALNEDGIFVAQSE 187 (270)
T ss_pred ccEEEEeCCCCCCccc-----------------chhHHHHHHHHHHHhCCCcEEEEcCC
Confidence 9999998764321110 01246888999999999999998644
No 158
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.35 E-value=4.7e-11 Score=95.55 Aligned_cols=129 Identities=13% Similarity=0.135 Sum_probs=82.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~~~~ 114 (256)
.++.+|||+|||+|.++..++... .+.++|+++|+++.+ .. ....++++|+.+.. .....+
T Consensus 31 ~~g~~VLDiG~GtG~~~~~l~~~~---~~~~~v~~vDis~~~--------~~--~~i~~~~~d~~~~~~~~~l~~~~~~~ 97 (188)
T TIGR00438 31 KPGDTVLDLGAAPGGWSQVAVEQV---GGKGRVIAVDLQPMK--------PI--ENVDFIRGDFTDEEVLNKIRERVGDD 97 (188)
T ss_pred CCCCEEEEecCCCCHHHHHHHHHh---CCCceEEEEeccccc--------cC--CCceEEEeeCCChhHHHHHHHHhCCC
Confidence 478999999999999988777763 234689999999864 11 12367777875531 112346
Q ss_pred CccEEEECCC--CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025211 115 LVDVMVVNPP--YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 115 ~fD~Ii~npP--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
+||+|+++++ +....... ..........++..+.++|+|||++++.........++...++.. |.
T Consensus 98 ~~D~V~~~~~~~~~g~~~~~------------~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~-~~ 164 (188)
T TIGR00438 98 KVDVVMSDAAPNISGYWDID------------HLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL-FE 164 (188)
T ss_pred CccEEEcCCCCCCCCCcccc------------HHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-hc
Confidence 7999999853 21100000 000011246889999999999999999665555555666666554 44
Q ss_pred EEE
Q 025211 193 ARI 195 (256)
Q Consensus 193 ~~~ 195 (256)
...
T Consensus 165 ~~~ 167 (188)
T TIGR00438 165 KVK 167 (188)
T ss_pred eEE
Confidence 333
No 159
>PLN02366 spermidine synthase
Probab=99.34 E-value=7.4e-11 Score=100.96 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=81.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CC---cceEEEcchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NV---HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~---~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||++|||.|..+.++++. .+-.+|+.+|+++.+++.|++.+... ++ ..+++.+|+...+....+++
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~----~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~ 165 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH----SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGT 165 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCC
Confidence 46799999999999987766553 22358999999999999999987643 22 23899999888765433568
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
||+|+++.+-...+. .......+++.+.+.|+|||+++..
T Consensus 166 yDvIi~D~~dp~~~~-----------------~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 166 YDAIIVDSSDPVGPA-----------------QELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred CCEEEEcCCCCCCch-----------------hhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 999999753211110 0112468899999999999999763
No 160
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=7.6e-12 Score=92.81 Aligned_cols=83 Identities=27% Similarity=0.472 Sum_probs=70.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++++++|+|||+|.+.++.+.. ..-.|.|+||+|++++.+++|..+..++.++.++|+.+.... .+.||..+
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~-----~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~--~g~fDtav 119 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMP-----KNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELK--GGIFDTAV 119 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcC-----CCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhcc--CCeEeeEE
Confidence 58999999999999988665542 234899999999999999999999888889999999887443 48899999
Q ss_pred ECCCCCCCCC
Q 025211 121 VNPPYVPTPE 130 (256)
Q Consensus 121 ~npP~~~~~~ 130 (256)
.||||.....
T Consensus 120 iNppFGTk~~ 129 (185)
T KOG3420|consen 120 INPPFGTKKK 129 (185)
T ss_pred ecCCCCcccc
Confidence 9999975443
No 161
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.33 E-value=3e-11 Score=106.38 Aligned_cols=126 Identities=23% Similarity=0.232 Sum_probs=96.3
Q ss_pred CCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025211 15 PEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 15 ~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+-+|.|... .+.+...+.+.+.. ..++.+|||++||+|.+++.++... +...|+++|+++.+++.+++|++.|
T Consensus 31 ~vFyqp~~~~nrdl~~~v~~~~~~--~~~~~~vLDl~aGsG~~~l~~a~~~----~~~~V~a~Din~~Av~~a~~N~~~N 104 (382)
T PRK04338 31 PVFYNPRMELNRDISVLVLRAFGP--KLPRESVLDALSASGIRGIRYALET----GVEKVTLNDINPDAVELIKKNLELN 104 (382)
T ss_pred CeeeCccccchhhHHHHHHHHHHh--hcCCCEEEECCCcccHHHHHHHHHC----CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 447888877 55555566555421 1134789999999999999888763 2348999999999999999999999
Q ss_pred CCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 94 NVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 94 ~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+++. .+.++|+...+.. ...||+|++||| .. ...++..+...+++||+++++
T Consensus 105 ~~~~~~v~~~Da~~~l~~--~~~fD~V~lDP~-Gs------------------------~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 105 GLENEKVFNKDANALLHE--ERKFDVVDIDPF-GS------------------------PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCceEEEhhhHHHHHhh--cCCCCEEEECCC-CC------------------------cHHHHHHHHHHhcCCCEEEEE
Confidence 9876 7999999776542 357999999986 21 235677767778999999996
Q ss_pred E
Q 025211 173 T 173 (256)
Q Consensus 173 ~ 173 (256)
.
T Consensus 158 A 158 (382)
T PRK04338 158 A 158 (382)
T ss_pred e
Confidence 4
No 162
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.33 E-value=2.4e-12 Score=102.65 Aligned_cols=126 Identities=17% Similarity=0.244 Sum_probs=93.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++-+++||+|||||..+..+-.+. ..++|+|||.+|+++|.+. ++-..+.+.++..+.....+++||+|+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a------~~ltGvDiS~nMl~kA~eK----g~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA------DRLTGVDISENMLAKAHEK----GLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH------hhccCCchhHHHHHHHHhc----cchHHHHHHHHHHHhhhccCCcccchh
Confidence 346899999999999888777663 3799999999999998764 233366667776666545568999999
Q ss_pred ECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHH
Q 025211 121 VNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQIC 183 (256)
Q Consensus 121 ~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~ 183 (256)
+-- ||. -.++.++-.+..+|+|||.+.|+..+.. ....++
T Consensus 194 AaDVl~Yl-----------------------G~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr 250 (287)
T COG4976 194 AADVLPYL-----------------------GALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVR 250 (287)
T ss_pred hhhHHHhh-----------------------cchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHH
Confidence 843 221 1267788889999999999999764321 235788
Q ss_pred HHHHHcCCcEEEEEec
Q 025211 184 LQMMEKGYAARIVVQR 199 (256)
Q Consensus 184 ~~~~~~g~~~~~~~~~ 199 (256)
..+...||.++.+...
T Consensus 251 ~~l~~~Gl~~i~~~~t 266 (287)
T COG4976 251 ALLAASGLEVIAIEDT 266 (287)
T ss_pred HHHHhcCceEEEeecc
Confidence 8889999988766543
No 163
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.5e-10 Score=99.85 Aligned_cols=166 Identities=19% Similarity=0.165 Sum_probs=116.1
Q ss_pred ccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025211 13 SHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
+..+.+.+...+.+++..+++- .++.+|||+|++.|.-+..+++.+. ..+..|+++|+++.-++..++|+.+
T Consensus 133 ~~~G~~~vQd~sS~l~a~~L~p------~pge~VlD~cAAPGGKTthla~~~~--~~~~iV~A~D~~~~Rl~~l~~nl~R 204 (355)
T COG0144 133 FAEGLIYVQDEASQLPALVLDP------KPGERVLDLCAAPGGKTTHLAELME--NEGAIVVAVDVSPKRLKRLRENLKR 204 (355)
T ss_pred hhceEEEEcCHHHHHHHHHcCC------CCcCEEEEECCCCCCHHHHHHHhcC--CCCceEEEEcCCHHHHHHHHHHHHH
Confidence 3445566666666666655543 6899999999999999999998865 2345679999999999999999999
Q ss_pred cCCcc-eEEEcchhhchhhhcC-CCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhccccC
Q 025211 93 HNVHA-DLINTDIASGLEKRLA-GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 93 ~~~~~-~~~~~d~~~~~~~~~~-~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~Lkpg 166 (256)
.|+.+ .+++.|.......... ++||.|++++|-.-..- -++.++..|.-... -...+..+|....++||||
T Consensus 205 lG~~nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~---irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 205 LGVRNVIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGV---IRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred cCCCceEEEecccccccccccccCcCcEEEECCCCCCCcc---cccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99987 7777776544332222 35999999999754322 22333333322111 1225678899999999999
Q ss_pred eEEEEEEeCCCCH---HHHHHHHHHc
Q 025211 167 GWLYLVTLTANDP---SQICLQMMEK 189 (256)
Q Consensus 167 G~l~~~~~~~~~~---~~~~~~~~~~ 189 (256)
|++++++++.... ..+...+.+.
T Consensus 282 G~LVYSTCS~~~eENE~vV~~~L~~~ 307 (355)
T COG0144 282 GVLVYSTCSLTPEENEEVVERFLERH 307 (355)
T ss_pred CEEEEEccCCchhcCHHHHHHHHHhC
Confidence 9999999876532 2344445443
No 164
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.31 E-value=2.6e-11 Score=86.00 Aligned_cols=102 Identities=27% Similarity=0.448 Sum_probs=78.0
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcCCCccEEEECC
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
+|+|+|||+|.++..++. .+...++++|+++.+++.+++........ .++...|+.+... ...+++|+|++++
T Consensus 1 ~ildig~G~G~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-----GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-----CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcc
Confidence 489999999998766655 24569999999999999888644433333 3888889887653 2346899999999
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
++... ......++..+.+.|++||.+++.
T Consensus 75 ~~~~~--------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 75 PLHHL--------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ceeeh--------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 87642 123678899999999999999875
No 165
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.31 E-value=6.2e-11 Score=98.18 Aligned_cols=103 Identities=20% Similarity=0.228 Sum_probs=86.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-----CC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-----~~ 114 (256)
+.++|||+|+++|.-++.++..+. ++++++++|.+++..+.|++++...|+.. +++.+|+.+.++... .+
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~---~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~ 155 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALP---EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG 155 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence 678999999999999999988753 46799999999999999999999998754 899999998876542 26
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+||+|+.+-- ...+..+++.+.++|++||.+++
T Consensus 156 ~fD~iFiDad------------------------K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 156 TFDFIFVDAD------------------------KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred cccEEEecCC------------------------HHHhHHHHHHHHHhcCCCeEEEE
Confidence 8999998521 22367888889999999999886
No 166
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.30 E-value=7.3e-11 Score=94.89 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=58.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|||+|||+|.++..++.. .+..++|+|+++++++.++++ + .+++.+|+.+...++.+++||+|++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-----~~~~~~giD~s~~~i~~a~~~----~--~~~~~~d~~~~l~~~~~~sfD~Vi~ 81 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-----KQVRGYGIEIDQDGVLACVAR----G--VNVIQGDLDEGLEAFPDKSFDYVIL 81 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-----cCCcEEEEeCCHHHHHHHHHc----C--CeEEEEEhhhcccccCCCCcCEEEE
Confidence 5689999999999987666543 245789999999999887642 2 3678888876433344578999999
Q ss_pred CCCCCCCCC
Q 025211 122 NPPYVPTPE 130 (256)
Q Consensus 122 npP~~~~~~ 130 (256)
+.++.+..+
T Consensus 82 ~~~l~~~~d 90 (194)
T TIGR02081 82 SQTLQATRN 90 (194)
T ss_pred hhHhHcCcC
Confidence 987765443
No 167
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.30 E-value=2.1e-10 Score=96.07 Aligned_cols=139 Identities=16% Similarity=0.102 Sum_probs=92.9
Q ss_pred HHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-chhhc
Q 025211 29 DALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT-DIASG 107 (256)
Q Consensus 29 ~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-d~~~~ 107 (256)
+.+.+.+. +-.+++|||||||+|..+..++.. ++. .|+|+|.++..+-..+---...+.+..+... ...+.
T Consensus 105 ~rl~p~l~---~L~gk~VLDIGC~nGY~~frM~~~----GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~ 176 (315)
T PF08003_consen 105 DRLLPHLP---DLKGKRVLDIGCNNGYYSFRMLGR----GAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVED 176 (315)
T ss_pred HHHHhhhC---CcCCCEEEEecCCCcHHHHHHhhc----CCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhh
Confidence 44555543 357899999999999997776655 443 7999999987765433222222333333332 22222
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe------------C
Q 025211 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL------------T 175 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~------------~ 175 (256)
++. .+.||+|+|-..++|..+ ....|.++.+.|++||.+++-+- .
T Consensus 177 Lp~--~~~FDtVF~MGVLYHrr~---------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~ 233 (315)
T PF08003_consen 177 LPN--LGAFDTVFSMGVLYHRRS---------------------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPE 233 (315)
T ss_pred ccc--cCCcCEEEEeeehhccCC---------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccC
Confidence 222 478999999777776554 35779999999999999997441 1
Q ss_pred C-----------CCHHHHHHHHHHcCCcEEEEEe
Q 025211 176 A-----------NDPSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 176 ~-----------~~~~~~~~~~~~~g~~~~~~~~ 198 (256)
. .....+..++++.||..+.+..
T Consensus 234 ~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 234 DRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred CcccCCCceEEeCCHHHHHHHHHHcCCceEEEec
Confidence 1 1346889999999998776653
No 168
>PRK03612 spermidine synthase; Provisional
Probab=99.30 E-value=1.1e-10 Score=107.05 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=91.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---c--CC---cceEEEcchhhchhhhc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---H--NV---HADLINTDIASGLEKRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~--~~---~~~~~~~d~~~~~~~~~ 112 (256)
+++++|||+|||+|..+.++++. .+..+++++|+|+++++.++++... + .. ..+++.+|..+.... .
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~----~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~-~ 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY----PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK-L 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC----CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-C
Confidence 46789999999999987666543 2226999999999999999985321 1 12 237899999887644 3
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----CHHHHHHHHHH
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN----DPSQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----~~~~~~~~~~~ 188 (256)
+++||+|++|+|....+... .....++++.+.+.|+|||++++...+.. ...++.+.+++
T Consensus 371 ~~~fDvIi~D~~~~~~~~~~----------------~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~ 434 (521)
T PRK03612 371 AEKFDVIIVDLPDPSNPALG----------------KLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEA 434 (521)
T ss_pred CCCCCEEEEeCCCCCCcchh----------------ccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHH
Confidence 47899999998753211110 01135788999999999999988443211 12356777778
Q ss_pred cCCc
Q 025211 189 KGYA 192 (256)
Q Consensus 189 ~g~~ 192 (256)
.||.
T Consensus 435 ~gf~ 438 (521)
T PRK03612 435 AGLA 438 (521)
T ss_pred cCCE
Confidence 8883
No 169
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=99.30 E-value=8.9e-11 Score=94.61 Aligned_cols=153 Identities=12% Similarity=0.120 Sum_probs=119.3
Q ss_pred cccCCchHHHHHHHHHhhcccccCC--CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025211 18 YEPCDDSFALVDALLADRINLVEHH--PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~--~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
-.++...+++..++++.+...+..+ +++++|||+|.|..++.+|.. +|+.+|+-+|....-+...+.-..+.++
T Consensus 41 t~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~----~p~~~vtLles~~Kk~~FL~~~~~eL~L 116 (215)
T COG0357 41 TAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIA----FPDLKVTLLESLGKKIAFLREVKKELGL 116 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHh----ccCCcEEEEccCchHHHHHHHHHHHhCC
Confidence 3466667888889988886555444 689999999999999999976 7888999999999999999999999999
Q ss_pred cc-eEEEcchhhchhhhcCCC-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE-
Q 025211 96 HA-DLINTDIASGLEKRLAGL-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV- 172 (256)
Q Consensus 96 ~~-~~~~~d~~~~~~~~~~~~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~- 172 (256)
++ +++++++.+..... . ||+|++- +...+..+.+-+..++|+||.+++.
T Consensus 117 ~nv~i~~~RaE~~~~~~---~~~D~vtsR-------------------------Ava~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 117 ENVEIVHGRAEEFGQEK---KQYDVVTSR-------------------------AVASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred CCeEEehhhHhhccccc---ccCcEEEee-------------------------hccchHHHHHHHHHhcccCCcchhhh
Confidence 86 99999999885432 3 9999982 2233778899999999999987532
Q ss_pred -EeCCCCHHHHHHHHHHcCCcEEEEEecCCC
Q 025211 173 -TLTANDPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 173 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
........+....+...++....+.....+
T Consensus 169 ~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~p 199 (215)
T COG0357 169 GLAGKDELPEAEKAILPLGGQVEKVFSLTVP 199 (215)
T ss_pred HHhhhhhHHHHHHHHHhhcCcEEEEEEeecC
Confidence 223344556777777778777666655443
No 170
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.28 E-value=2e-11 Score=97.69 Aligned_cols=131 Identities=13% Similarity=0.211 Sum_probs=103.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCc---ceEEEcchhhchhhhcCCC
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVH---ADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~---~~~~~~d~~~~~~~~~~~~ 115 (256)
.+.+.+|||.|.|-|..++++++. ++ .|+.+|.+|..++.|.-|--..++. .+++.+|+.+....+.+++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~r------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALER------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHc------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence 457899999999999999888775 45 8999999999999987664333322 2899999999999988999
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-------CCCHHHHHHHHHH
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-------ANDPSQICLQMME 188 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~~~~~~~~~~~~~ 188 (256)
||+||-+||=+.... .-....|-++++++|||||+++=.... .+....+.+.+.+
T Consensus 206 fDaIiHDPPRfS~Ag------------------eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~ 267 (287)
T COG2521 206 FDAIIHDPPRFSLAG------------------ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRR 267 (287)
T ss_pred cceEeeCCCccchhh------------------hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHh
Confidence 999999999654332 123568889999999999999864422 2345678899999
Q ss_pred cCCcEE
Q 025211 189 KGYAAR 194 (256)
Q Consensus 189 ~g~~~~ 194 (256)
.||...
T Consensus 268 vGF~~v 273 (287)
T COG2521 268 VGFEVV 273 (287)
T ss_pred cCceee
Confidence 999843
No 171
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.28 E-value=2.5e-10 Score=97.97 Aligned_cols=144 Identities=20% Similarity=0.231 Sum_probs=108.6
Q ss_pred eeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 11 VSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 11 ~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
+++..-.|.|+.-++. ..+++.. .+|.+|+|+.+|.|.+++.+|+. ....|+|+|+||.+++.+++|+
T Consensus 164 vD~~Kv~Fsprl~~ER--~Rva~~v-----~~GE~V~DmFAGVGpfsi~~Ak~-----g~~~V~A~diNP~A~~~L~eNi 231 (341)
T COG2520 164 VDVAKVYFSPRLSTER--ARVAELV-----KEGETVLDMFAGVGPFSIPIAKK-----GRPKVYAIDINPDAVEYLKENI 231 (341)
T ss_pred EchHHeEECCCchHHH--HHHHhhh-----cCCCEEEEccCCcccchhhhhhc-----CCceEEEEecCHHHHHHHHHHH
Confidence 4555567888765444 3444443 46999999999999999999886 2235999999999999999999
Q ss_pred HHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE
Q 025211 91 EAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 91 ~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
..|++.. ..+++|..+..... ..+|-|+.+.|.. ...++....+.+++||+
T Consensus 232 ~LN~v~~~v~~i~gD~rev~~~~--~~aDrIim~~p~~-------------------------a~~fl~~A~~~~k~~g~ 284 (341)
T COG2520 232 RLNKVEGRVEPILGDAREVAPEL--GVADRIIMGLPKS-------------------------AHEFLPLALELLKDGGI 284 (341)
T ss_pred HhcCccceeeEEeccHHHhhhcc--ccCCEEEeCCCCc-------------------------chhhHHHHHHHhhcCcE
Confidence 9999876 79999999986553 7899999998853 35778888889999999
Q ss_pred EEEEEeCCCCH------HHHHHHHHHcCCcE
Q 025211 169 LYLVTLTANDP------SQICLQMMEKGYAA 193 (256)
Q Consensus 169 l~~~~~~~~~~------~~~~~~~~~~g~~~ 193 (256)
+.+........ ..+.....+.|++.
T Consensus 285 iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~ 315 (341)
T COG2520 285 IHYYEFVPEDDIEERPEKRIKSAARKGGYKV 315 (341)
T ss_pred EEEEeccchhhcccchHHHHHHHHhhccCcc
Confidence 98855433222 34455555555543
No 172
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.27 E-value=6.9e-11 Score=107.94 Aligned_cols=136 Identities=16% Similarity=0.151 Sum_probs=102.7
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
...+..+||||||.|.+++.+|.. +|+..++|+|+....+..+.+.+...++.+ .++..|+......+.++++|.
T Consensus 345 ~~~~p~~lEIG~G~G~~~~~~A~~----~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~ 420 (506)
T PRK01544 345 NEKRKVFLEIGFGMGEHFINQAKM----NPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDG 420 (506)
T ss_pred CCCCceEEEECCCchHHHHHHHHh----CCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccE
Confidence 356789999999999999999888 899999999999999998888888888876 777778755444455688999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC-Cc
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG-YA 192 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g-~~ 192 (256)
|+.|.| .|.+ +.++.+.++ +...++..+.++|+|||.+.+.+.......+....+.+.+ |+
T Consensus 421 i~i~FP---DPWp--Kkrh~krRl--------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~f~ 482 (506)
T PRK01544 421 IYILFP---DPWI--KNKQKKKRI--------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGNFE 482 (506)
T ss_pred EEEECC---CCCC--CCCCccccc--------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCCeE
Confidence 999865 1111 112222222 3578899999999999999997765555556666666654 44
No 173
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.26 E-value=1.5e-10 Score=91.31 Aligned_cols=131 Identities=18% Similarity=0.236 Sum_probs=81.5
Q ss_pred ccCCchHHHHHHHHHhhc---ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-
Q 025211 19 EPCDDSFALVDALLADRI---NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN- 94 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~---~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~- 94 (256)
.-++-+..|++++..... .....++++|||+|||+|..++.++.. .+...|+.+|.++ .++.++.|+..|+
T Consensus 19 ~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~----~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~ 93 (173)
T PF10294_consen 19 KVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL----FGAARVVLTDYNE-VLELLRRNIELNGS 93 (173)
T ss_dssp ----HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-----T-SEEEEEE-S--HHHHHHHHHHTT--
T ss_pred EEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc----cCCceEEEeccch-hhHHHHHHHHhccc
Confidence 334447777787777421 111357899999999999999988887 3456999999999 9999999999987
Q ss_pred -Cc--ceEEEcchhhch-hh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025211 95 -VH--ADLINTDIASGL-EK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 95 -~~--~~~~~~d~~~~~-~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
.. ..+...|+.+.. .. ....+||+|++.-..|.. ...+.++..+.++|+++|.+
T Consensus 94 ~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~---------------------~~~~~L~~tl~~ll~~~~~v 152 (173)
T PF10294_consen 94 LLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDE---------------------ELFEPLVRTLKRLLKPNGKV 152 (173)
T ss_dssp ------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-G---------------------GGHHHHHHHHHHHBTT-TTE
T ss_pred cccccccCcEEEecCcccccccccccCCEEEEecccchH---------------------HHHHHHHHHHHHHhCCCCEE
Confidence 22 266666765533 12 234689999984433321 12678899999999999997
Q ss_pred EEEEeC
Q 025211 170 YLVTLT 175 (256)
Q Consensus 170 ~~~~~~ 175 (256)
++....
T Consensus 153 l~~~~~ 158 (173)
T PF10294_consen 153 LLAYKR 158 (173)
T ss_dssp EEEEE-
T ss_pred EEEeCE
Confidence 776553
No 174
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=99.25 E-value=3.7e-10 Score=89.53 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=97.0
Q ss_pred cCCchHHHHHHHHHhhcccc--cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025211 20 PCDDSFALVDALLADRINLV--EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~--~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
+++..+++..++++.+..++ +..+.+++|+|+|.|..++.++.. .|+.+++.+|.+..-+...+.-+...++++
T Consensus 24 ~~~~~~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~----~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n 99 (184)
T PF02527_consen 24 IRDPEEIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIA----RPDLQVTLVESVGKKVAFLKEVVRELGLSN 99 (184)
T ss_dssp --SHHHHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-----TTSEEEEEESSHHHHHHHHHHHHHHT-SS
T ss_pred CCCHHHHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHh----CCCCcEEEEeCCchHHHHHHHHHHHhCCCC
Confidence 34445666678888775443 223338999999999999999998 789999999999999999999999999986
Q ss_pred -eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 98 -DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 98 -~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+++++++.+ .....+||+|++- ++ ..+..+++-+..+|++||++++. .+.
T Consensus 100 v~v~~~R~E~---~~~~~~fd~v~aR------------------Av-------~~l~~l~~~~~~~l~~~G~~l~~-KG~ 150 (184)
T PF02527_consen 100 VEVINGRAEE---PEYRESFDVVTAR------------------AV-------APLDKLLELARPLLKPGGRLLAY-KGP 150 (184)
T ss_dssp EEEEES-HHH---TTTTT-EEEEEEE------------------SS-------SSHHHHHHHHGGGEEEEEEEEEE-ESS
T ss_pred EEEEEeeecc---cccCCCccEEEee------------------hh-------cCHHHHHHHHHHhcCCCCEEEEE-cCC
Confidence 999999988 2235789999992 11 12678899999999999999984 444
Q ss_pred CCHHHHHH
Q 025211 177 NDPSQICL 184 (256)
Q Consensus 177 ~~~~~~~~ 184 (256)
...+++..
T Consensus 151 ~~~~El~~ 158 (184)
T PF02527_consen 151 DAEEELEE 158 (184)
T ss_dssp --HHHHHT
T ss_pred ChHHHHHH
Confidence 44444433
No 175
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=99.24 E-value=6.1e-11 Score=107.81 Aligned_cols=168 Identities=18% Similarity=0.170 Sum_probs=114.8
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025211 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
..+|+|+...+++++.+.. .+..+|+|+.||+|.+.+.....+++..-...++|.|+++.....|+.|+-.++
T Consensus 166 GEfyTP~~v~~liv~~l~~-------~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhg 238 (489)
T COG0286 166 GEFYTPREVSELIVELLDP-------EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHG 238 (489)
T ss_pred CccCChHHHHHHHHHHcCC-------CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhC
Confidence 5699998888888876665 245699999999999999999888653313689999999999999999999999
Q ss_pred Ccc--eEEEcchhhchhh---hcCCCccEEEECCCCCCCCCcccc--cccch-hhhcCCCC-cHHHHHHHHHHHhhcccc
Q 025211 95 VHA--DLINTDIASGLEK---RLAGLVDVMVVNPPYVPTPEDEVG--REGIA-SAWAGGEN-GRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ~~~--~~~~~d~~~~~~~---~~~~~fD~Ii~npP~~~~~~~~~~--~~~~~-~~~~~~~~-~~~~~~~~l~~~~~~Lkp 165 (256)
+.. ....+|-...... ...+.||.|++||||......... ..+-. ....+... .......+++.+...|+|
T Consensus 239 i~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 239 IEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred CCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 873 5555654443222 134679999999999744333221 11111 11122111 111226788999999999
Q ss_pred CeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025211 166 RGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
||++.++.+... ....+++.+...
T Consensus 319 ~g~aaivl~~gvlfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 319 GGRAAIVLPDGVLFRGGAEKDIRKDLLED 347 (489)
T ss_pred CceEEEEecCCcCcCCCchHHHHHHHHhc
Confidence 998887776432 345677777663
No 176
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.21 E-value=3e-10 Score=96.09 Aligned_cols=89 Identities=17% Similarity=0.132 Sum_probs=67.5
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. .+ +|+|+|+++.+++.+++++.. ...+++++|+.
T Consensus 29 ~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~----~~--~v~avE~d~~~~~~~~~~~~~--~~v~~i~~D~~ 97 (272)
T PRK00274 29 NILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLER----AA--KVTAVEIDRDLAPILAETFAE--DNLTIIEGDAL 97 (272)
T ss_pred HHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHh----CC--cEEEEECCHHHHHHHHHhhcc--CceEEEEChhh
Confidence 45556666543 246789999999999999888876 32 899999999999999987642 23489999988
Q ss_pred hchhhhcCCCccEEEECCCCCC
Q 025211 106 SGLEKRLAGLVDVMVVNPPYVP 127 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~ 127 (256)
+...+ +-.+|.|++||||+.
T Consensus 98 ~~~~~--~~~~~~vv~NlPY~i 117 (272)
T PRK00274 98 KVDLS--ELQPLKVVANLPYNI 117 (272)
T ss_pred cCCHH--HcCcceEEEeCCccc
Confidence 76322 112699999999974
No 177
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.21 E-value=6.2e-11 Score=95.41 Aligned_cols=124 Identities=21% Similarity=0.277 Sum_probs=87.6
Q ss_pred HHHHHhhccccc---CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025211 29 DALLADRINLVE---HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 29 ~~l~~~~~~~~~---~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.|++.+++.+.+ ....+|||+|||.|.....+.+--. .++..+++.|.+|.+++..+++...+.........|+.
T Consensus 55 ~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~--n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt 132 (264)
T KOG2361|consen 55 NWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSP--NNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLT 132 (264)
T ss_pred HHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCC--CCCeEEEEcCCChHHHHHHHhccccchhhhcccceecc
Confidence 356666655432 3334899999999998777766511 23489999999999999999887655433345555654
Q ss_pred hch--hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 106 SGL--EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 106 ~~~--~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... .+...+++|+|++-..+...+.. -+...++.+.++|||||.+++-.
T Consensus 133 ~~~~~~~~~~~svD~it~IFvLSAi~pe-------------------k~~~a~~nl~~llKPGG~llfrD 183 (264)
T KOG2361|consen 133 SPSLKEPPEEGSVDIITLIFVLSAIHPE-------------------KMQSVIKNLRTLLKPGGSLLFRD 183 (264)
T ss_pred chhccCCCCcCccceEEEEEEEeccChH-------------------HHHHHHHHHHHHhCCCcEEEEee
Confidence 432 23456899999986555433332 26889999999999999999854
No 178
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.20 E-value=1.5e-10 Score=98.48 Aligned_cols=91 Identities=22% Similarity=0.331 Sum_probs=71.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-c-ceEEEcc
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-H-ADLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~-~~~~~~d 103 (256)
.+++.+.+... ..++.+|||+|||+|.++..++.. ...++|+|+++.+++.+++++..++. . .+++++|
T Consensus 23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D 93 (294)
T PTZ00338 23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQL------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD 93 (294)
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHh------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 34555555443 247789999999999999887765 24799999999999999999887653 3 3899999
Q ss_pred hhhchhhhcCCCccEEEECCCCCCCC
Q 025211 104 IASGLEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 104 ~~~~~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
+.+... ..||.|++|+||+...
T Consensus 94 al~~~~----~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 94 ALKTEF----PYFDVCVANVPYQISS 115 (294)
T ss_pred Hhhhcc----cccCEEEecCCcccCc
Confidence 987532 4689999999998654
No 179
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.19 E-value=5.9e-10 Score=86.11 Aligned_cols=131 Identities=21% Similarity=0.270 Sum_probs=76.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCC-ccEEE
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGL-VDVMV 120 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~-fD~Ii 120 (256)
..|+|++||.|..++.+|+.. .+|+++|+++..++.|+.|+...|+.. .++++|+.+......... +|+|+
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVF 74 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEE
T ss_pred CEEEEeccCcCHHHHHHHHhC------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEE
Confidence 369999999999999999972 389999999999999999999999754 999999999876543233 89999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
++|||.-..-........... .... ...++++.+.++ .++ +++..|......++.+...+
T Consensus 75 lSPPWGGp~Y~~~~~fdL~~~-~~p~----~~~~l~~~~~~~-t~n--v~l~LPRn~dl~ql~~~~~~ 134 (163)
T PF09445_consen 75 LSPPWGGPSYSKKDVFDLEKS-MQPF----NLEDLLKAARKI-TPN--VVLFLPRNSDLNQLSQLTRE 134 (163)
T ss_dssp E---BSSGGGGGSSSB-TTTS-SSS------HHHHHHHHHHH--S---EEEEEETTB-HHHHHHT---
T ss_pred ECCCCCCccccccCccCHHHc-cCCC----CHHHHHHHHHhh-CCC--EEEEeCCCCCHHHHHHHhcc
Confidence 999997533322111111010 0110 134555554433 333 33335877777777666543
No 180
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.19 E-value=1.4e-10 Score=97.42 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=68.4
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+. ..++.+|||+|||+|.++..+++. ...++|+|+++.+++.+++++... -+.+++++|+
T Consensus 15 ~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~------~~~v~~vEid~~~~~~l~~~~~~~-~~v~ii~~D~ 84 (258)
T PRK14896 15 DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKR------AKKVYAIELDPRLAEFLRDDEIAA-GNVEIIEGDA 84 (258)
T ss_pred HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHh------CCEEEEEECCHHHHHHHHHHhccC-CCEEEEEecc
Confidence 344455555442 246799999999999999888875 248999999999999999887541 1348999998
Q ss_pred hhchhhhcCCCccEEEECCCCCCC
Q 025211 105 ASGLEKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~npP~~~~ 128 (256)
.+... ..||.|++|+||+..
T Consensus 85 ~~~~~----~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 LKVDL----PEFNKVVSNLPYQIS 104 (258)
T ss_pred ccCCc----hhceEEEEcCCcccC
Confidence 87532 358999999999753
No 181
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.16 E-value=3.7e-10 Score=92.11 Aligned_cols=122 Identities=14% Similarity=0.125 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH------------
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE------------ 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~------------ 91 (256)
...|++++.... ..++.+||++|||.|.....++.. +..|+|+|+|+.+++.+.+...
T Consensus 29 np~L~~~~~~l~----~~~~~rvLvPgCGkg~D~~~LA~~------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~ 98 (226)
T PRK13256 29 NEFLVKHFSKLN----INDSSVCLIPMCGCSIDMLFFLSK------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYK 98 (226)
T ss_pred CHHHHHHHHhcC----CCCCCeEEEeCCCChHHHHHHHhC------CCcEEEEecCHHHHHHHHHHcCCCcceecccccc
Confidence 355556654431 235689999999999998888775 5689999999999998755210
Q ss_pred -HcCCcceEEEcchhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEE
Q 025211 92 -AHNVHADLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWL 169 (256)
Q Consensus 92 -~~~~~~~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 169 (256)
..+...++.++|+++.... ...+.||+|+-.--|...+. ....++++.+.++|+|||.+
T Consensus 99 ~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp-------------------~~R~~Y~~~l~~lL~pgg~l 159 (226)
T PRK13256 99 LYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPN-------------------DLRTNYAKMMLEVCSNNTQI 159 (226)
T ss_pred eeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCH-------------------HHHHHHHHHHHHHhCCCcEE
Confidence 1123448999999987421 12367999987544443332 23678999999999999998
Q ss_pred EEEEe
Q 025211 170 YLVTL 174 (256)
Q Consensus 170 ~~~~~ 174 (256)
++++.
T Consensus 160 lll~~ 164 (226)
T PRK13256 160 LLLVM 164 (226)
T ss_pred EEEEE
Confidence 88764
No 182
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.16 E-value=4.9e-10 Score=91.38 Aligned_cols=130 Identities=18% Similarity=0.215 Sum_probs=87.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cC------C------cceEEEcchhhc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HN------V------HADLINTDIASG 107 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~------~------~~~~~~~d~~~~ 107 (256)
.++.+||.+|||.|.-...++.. +.+|+|+|+++.+++.+.+.... .. . ..++.++|+++.
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQ------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHT------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCeEEEeCCCChHHHHHHHHC------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 56789999999999998888775 56999999999999988432111 10 0 126889999987
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC----------
Q 025211 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN---------- 177 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------- 177 (256)
... ..++||+|+-.--+...+.. ...++.+.+.++|+|||.+++++-.+.
T Consensus 110 ~~~-~~g~fD~iyDr~~l~Alpp~-------------------~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~ 169 (218)
T PF05724_consen 110 PPE-DVGKFDLIYDRTFLCALPPE-------------------MRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS 169 (218)
T ss_dssp GGS-CHHSEEEEEECSSTTTS-GG-------------------GHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred Chh-hcCCceEEEEecccccCCHH-------------------HHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence 543 22579999986555444332 267899999999999999555442111
Q ss_pred -CHHHHHHHHHHcCCcEEEEE
Q 025211 178 -DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 178 -~~~~~~~~~~~~g~~~~~~~ 197 (256)
..+++.+.+. .+|+++.+.
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEe
Confidence 2456666665 667665544
No 183
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.14 E-value=6.6e-09 Score=91.21 Aligned_cols=131 Identities=22% Similarity=0.206 Sum_probs=93.9
Q ss_pred cCCccccCCc--hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025211 14 HPEVYEPCDD--SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 14 ~~~~~~p~~~--~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+-+|-|... +..-+..+...........+.+|||+.||+|..++.++.... .-..|+++|+++++++.+++|++
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~---ga~~Vv~nD~n~~Av~~i~~N~~ 90 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIE---GVREVFANDINPKAVESIKNNVE 90 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCC---CCCEEEEEeCCHHHHHHHHHHHH
Confidence 4568888766 222222121111110011236899999999999998887631 11379999999999999999999
Q ss_pred HcCCcc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 92 AHNVHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 ~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
.|++.. .+.+.|+...+... ..+||+|..+| |.. ...+++.+.+.+++||.++
T Consensus 91 ~N~~~~~~v~~~Da~~~l~~~-~~~fDvIdlDP-fGs------------------------~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 91 YNSVENIEVPNEDAANVLRYR-NRKFHVIDIDP-FGT------------------------PAPFVDSAIQASAERGLLL 144 (374)
T ss_pred HhCCCcEEEEchhHHHHHHHh-CCCCCEEEeCC-CCC------------------------cHHHHHHHHHhcccCCEEE
Confidence 998865 89999998886542 35799999998 431 2367888888999999999
Q ss_pred EEE
Q 025211 171 LVT 173 (256)
Q Consensus 171 ~~~ 173 (256)
++.
T Consensus 145 vTa 147 (374)
T TIGR00308 145 VTA 147 (374)
T ss_pred EEe
Confidence 963
No 184
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=99.14 E-value=1.9e-09 Score=91.47 Aligned_cols=163 Identities=21% Similarity=0.221 Sum_probs=111.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025211 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
.+.+...+.+..++..++.. .++.+|||+|+|.|.-+..++..+. ..+.+++.|+++..++..+.++.+.|
T Consensus 64 ~G~~~vQd~sS~l~~~~L~~------~~~~~VLD~CAapGgKt~~la~~~~---~~g~i~A~D~~~~Rl~~l~~~~~r~g 134 (283)
T PF01189_consen 64 NGLFYVQDESSQLVALALDP------QPGERVLDMCAAPGGKTTHLAELMG---NKGEIVANDISPKRLKRLKENLKRLG 134 (283)
T ss_dssp TTSEEEHHHHHHHHHHHHTT------TTTSEEEESSCTTSHHHHHHHHHTT---TTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCcEEecccccccccccccc------cccccccccccCCCCceeeeeeccc---chhHHHHhccCHHHHHHHHHHHHhcC
Confidence 34444444444555444432 5889999999999999999998864 24699999999999999999999999
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCC----cHHHHHHHHHHHhhcc----cc
Q 025211 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGEN----GRAVIDKILPSADKLL----SK 165 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~L----kp 165 (256)
..+ .+...|............||.|+.++|-.... ...+.+...|.-... -......+|..+.+.+ ||
T Consensus 135 ~~~v~~~~~D~~~~~~~~~~~~fd~VlvDaPCSg~G---~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~ 211 (283)
T PF01189_consen 135 VFNVIVINADARKLDPKKPESKFDRVLVDAPCSGLG---TIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP 211 (283)
T ss_dssp -SSEEEEESHHHHHHHHHHTTTEEEEEEECSCCCGG---GTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE
T ss_pred CceEEEEeeccccccccccccccchhhcCCCccchh---hhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC
Confidence 877 66668887775444445799999999975432 222233333321111 1225678899999999 99
Q ss_pred CeEEEEEEeCCC---CHHHHHHHHHHc
Q 025211 166 RGWLYLVTLTAN---DPSQICLQMMEK 189 (256)
Q Consensus 166 gG~l~~~~~~~~---~~~~~~~~~~~~ 189 (256)
||++++++++.. ....+...+++.
T Consensus 212 gG~lvYsTCS~~~eENE~vV~~fl~~~ 238 (283)
T PF01189_consen 212 GGRLVYSTCSLSPEENEEVVEKFLKRH 238 (283)
T ss_dssp EEEEEEEESHHHGGGTHHHHHHHHHHS
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhC
Confidence 999999998543 233344445544
No 185
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.13 E-value=1.5e-09 Score=86.54 Aligned_cols=124 Identities=13% Similarity=0.147 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
..-+.+.+.+.++ ..+.+|||||||||.-...++.. .|+.+..-.|.++......+..+...+.++ ..+.
T Consensus 11 k~pIl~vL~~~l~----~~~~~vLEiaSGtGqHa~~FA~~----lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~ 82 (204)
T PF06080_consen 11 KDPILEVLKQYLP----DSGTRVLEIASGTGQHAVYFAQA----LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLA 82 (204)
T ss_pred HhHHHHHHHHHhC----ccCceEEEEcCCccHHHHHHHHH----CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeE
Confidence 3445555555553 23346999999999999888888 788999999999999888888888877765 6667
Q ss_pred cchhhchhhh------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 102 TDIASGLEKR------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 102 ~d~~~~~~~~------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.|+.+...+. ..++||+|+|.=-.+.. .+...+.+++.+.++|++||.+++.-|
T Consensus 83 lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~-------------------p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 83 LDVSAPPWPWELPAPLSPESFDAIFCINMLHIS-------------------PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred eecCCCCCccccccccCCCCcceeeehhHHHhc-------------------CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 7777663332 24689999982111111 123468899999999999999998654
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.09 E-value=4.9e-10 Score=100.50 Aligned_cols=106 Identities=21% Similarity=0.271 Sum_probs=77.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.|+|+|||+|-+...+++...+.....+|+|+|.++.++..+++.+..+++.. +++++|+.+...+ .++|+||
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp---ekvDIIV 263 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP---EKVDIIV 263 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS---S-EEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC---CceeEEE
Confidence 6899999999999887776664333345689999999999988888888888854 9999999998654 5999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+-. .. .+.+. +.....|....+.|||+|+++
T Consensus 264 SEl--------------LG-sfg~n----El~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 264 SEL--------------LG-SFGDN----ELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp E-----------------B-TTBTT----TSHHHHHHHGGGGEEEEEEEE
T ss_pred Eec--------------cC-Ccccc----ccCHHHHHHHHhhcCCCCEEe
Confidence 931 10 11111 135678888999999999887
No 187
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=99.06 E-value=2.4e-10 Score=91.30 Aligned_cols=123 Identities=13% Similarity=0.213 Sum_probs=86.5
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025211 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~ 80 (256)
.|..+..++.++.+.|-.. +..++-++.+.+..-. .+++.++||||.|..++ .-.++.+..+++++|.|+++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCI----YPliG~~eYgwrfvGseid~ 112 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCI----YPLIGVHEYGWRFVGSEIDS 112 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccc----cccccceeecceeecCccCH
Confidence 5667778899999988655 5555555555553321 25678999999999995 44555556689999999999
Q ss_pred HHHHHHHHHHHHc-CCcc--eEEE-cchhhchhhh--cCCCccEEEECCCCCCCCCc
Q 025211 81 YAVEVTRKTLEAH-NVHA--DLIN-TDIASGLEKR--LAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 81 ~~i~~a~~~~~~~-~~~~--~~~~-~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~~ 131 (256)
.+++.|+.++..| ++.. ++.. .|-....... ..+.||+++|||||+.+..+
T Consensus 113 ~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~s~~d 169 (292)
T COG3129 113 QSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHDSAAD 169 (292)
T ss_pred HHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeEecCCCcchhHHH
Confidence 9999999999988 5543 3322 2221111111 24789999999999977654
No 188
>PLN02823 spermine synthase
Probab=99.05 E-value=5.1e-09 Score=90.62 Aligned_cols=112 Identities=19% Similarity=0.202 Sum_probs=80.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----CcceEEEcchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||.+|+|.|..+.++.+. .+..+++++|+++++++.|++.+..++ ...+++.+|....+.. .+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~----~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~-~~~~ 176 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRH----KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK-RDEK 176 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhC----CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-CCCC
Confidence 35689999999999987666553 334589999999999999999876542 1238999999998743 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLV 172 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~ 172 (256)
||+|+++.+- +.... +.. .-....+++ .+.+.|+|||++++-
T Consensus 177 yDvIi~D~~d-p~~~~------~~~--------~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 177 FDVIIGDLAD-PVEGG------PCY--------QLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred ccEEEecCCC-ccccC------cch--------hhccHHHHHHHHHHhcCCCcEEEEe
Confidence 9999998531 10000 000 011356777 889999999998874
No 189
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.03 E-value=1.6e-09 Score=95.95 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=98.7
Q ss_pred eeccCC-ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 11 VSSHPE-VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 11 ~~~~~~-~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.+.|+ +|+-... .+.|...+-+.... ..++.++|++||||.+++++++.. ..|+|+|+++.+++.|++
T Consensus 353 F~iSp~AFFQ~Nt~~aevLys~i~e~~~l---~~~k~llDv~CGTG~iglala~~~------~~ViGvEi~~~aV~dA~~ 423 (534)
T KOG2187|consen 353 FRISPGAFFQTNTSAAEVLYSTIGEWAGL---PADKTLLDVCCGTGTIGLALARGV------KRVIGVEISPDAVEDAEK 423 (534)
T ss_pred EEECCchhhccCcHHHHHHHHHHHHHhCC---CCCcEEEEEeecCCceehhhhccc------cceeeeecChhhcchhhh
Confidence 556666 6666655 77777777776542 456999999999999998888752 389999999999999999
Q ss_pred HHHHcCCcc-eEEEcchhhchhhhcCC---Ccc-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025211 89 TLEAHNVHA-DLINTDIASGLEKRLAG---LVD-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 89 ~~~~~~~~~-~~~~~d~~~~~~~~~~~---~fD-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
|...||+.+ +|+++..++..+..... +=+ ++|.+||=. |+ ...++..+..+-
T Consensus 424 nA~~NgisNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~---------------------Gl--h~~~ik~l~~~~ 480 (534)
T KOG2187|consen 424 NAQINGISNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRK---------------------GL--HMKVIKALRAYK 480 (534)
T ss_pred cchhcCccceeeeecchhhccchhcccCCCCCceEEEECCCcc---------------------cc--cHHHHHHHHhcc
Confidence 999999988 99999777776554332 345 778888831 11 346677776665
Q ss_pred ccCeEEEEEEeCC
Q 025211 164 SKRGWLYLVTLTA 176 (256)
Q Consensus 164 kpgG~l~~~~~~~ 176 (256)
++.-.+++++...
T Consensus 481 ~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 481 NPRRLVYVSCNPH 493 (534)
T ss_pred CccceEEEEcCHH
Confidence 5776777765433
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.02 E-value=5.3e-09 Score=87.59 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.+++.+++.+. ..++.+|||+|||+|.++..++.. .+ .++++|+++.+++.++++... .-..+++++|+.
T Consensus 16 ~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~----~~--~v~~iE~d~~~~~~l~~~~~~-~~~v~v~~~D~~ 85 (253)
T TIGR00755 16 SVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKR----AK--KVTAIEIDPRLAEILRKLLSL-YERLEVIEGDAL 85 (253)
T ss_pred HHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHh----CC--cEEEEECCHHHHHHHHHHhCc-CCcEEEEECchh
Confidence 34455555443 246789999999999998888776 32 699999999999999887643 123388999988
Q ss_pred hchhhhcCCCcc---EEEECCCCC
Q 025211 106 SGLEKRLAGLVD---VMVVNPPYV 126 (256)
Q Consensus 106 ~~~~~~~~~~fD---~Ii~npP~~ 126 (256)
+...+ .+| +|++|+||+
T Consensus 86 ~~~~~----~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 86 KVDLP----DFPKQLKVVSNLPYN 105 (253)
T ss_pred cCChh----HcCCcceEEEcCChh
Confidence 76432 455 999999986
No 191
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.02 E-value=1.1e-09 Score=93.10 Aligned_cols=104 Identities=19% Similarity=0.305 Sum_probs=77.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
-.++.|||+|||||.+++..|+. + ...|+|+|-+.- ++.|++.+..|++.. +++.+.+.+...| .+++|+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA----G-A~~V~aVe~S~i-a~~a~~iv~~N~~~~ii~vi~gkvEdi~LP--~eKVDi 130 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA----G-ARKVYAVEASSI-ADFARKIVKDNGLEDVITVIKGKVEDIELP--VEKVDI 130 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh----C-cceEEEEechHH-HHHHHHHHHhcCccceEEEeecceEEEecC--ccceeE
Confidence 37899999999999999888887 3 348999998765 599999999999876 8999998888433 489999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
|++- |....+. -...++.++..--+.|+|||.++
T Consensus 131 IvSE--------------WMGy~Ll----~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 131 IVSE--------------WMGYFLL----YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred Eeeh--------------hhhHHHH----HhhhhhhhhhhhhhccCCCceEc
Confidence 9992 2221110 01123444444567899999987
No 192
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=99.01 E-value=2.8e-10 Score=95.87 Aligned_cols=128 Identities=17% Similarity=0.215 Sum_probs=90.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH-------HHHHHHHHcCCcc---eEEEcchhhchhh
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE-------VTRKTLEAHNVHA---DLINTDIASGLEK 110 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~-------~a~~~~~~~~~~~---~~~~~d~~~~~~~ 110 (256)
++|+.|+|+..|||.+.++++.. |+.|+|.||+-.++. ..+.|+++.|... .+..+|.......
T Consensus 207 ~pGdivyDPFVGTGslLvsaa~F------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~r 280 (421)
T KOG2671|consen 207 KPGDIVYDPFVGTGSLLVSAAHF------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLR 280 (421)
T ss_pred CCCCEEecCccccCceeeehhhh------cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchh
Confidence 68999999999999998877765 679999999999887 2356777777543 7888888766433
Q ss_pred hcCCCccEEEECCCCCCCCCcccc-cccc--------hhhhcCCCC--c-HHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 111 RLAGLVDVMVVNPPYVPTPEDEVG-REGI--------ASAWAGGEN--G-RAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~-~~~~--------~~~~~~~~~--~-~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
....||.|||+|||......++. .+.. ...+..... . .....++|.-..+.|..||++++..+.
T Consensus 281 -sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 281 -SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred -hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 25789999999999876654322 1111 111111111 0 124567788889999999999997763
No 193
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.00 E-value=2.6e-09 Score=86.15 Aligned_cols=124 Identities=19% Similarity=0.322 Sum_probs=80.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Cc-------------------
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-----VH------------------- 96 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~------------------- 96 (256)
..++.+|||||-+|.+++.+++.++. ..|.|+||++..|+.|++++.... +.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~----r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGP----RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhcc----ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 36899999999999999999998653 379999999999999999875321 11
Q ss_pred -----------c--------eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025211 97 -----------A--------DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 97 -----------~--------~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+ .+...|+.+ .....||+|+|-- ..+|.+.-| |-+-+..++.
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl~----~~~~~fDiIlcLS----------iTkWIHLNw-----gD~GL~~ff~ 193 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFLD----MIQPEFDIILCLS----------ITKWIHLNW-----GDDGLRRFFR 193 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhhh----hccccccEEEEEE----------eeeeEeccc-----ccHHHHHHHH
Confidence 0 011111221 2235799999821 012222222 1223789999
Q ss_pred HHhhccccCeEEEEEEeCCCCHHHHHHHHH
Q 025211 158 SADKLLSKRGWLYLVTLTANDPSQICLQMM 187 (256)
Q Consensus 158 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (256)
.+.++|.|||++++---++.......+..+
T Consensus 194 kis~ll~pgGiLvvEPQpWksY~kaar~~e 223 (288)
T KOG2899|consen 194 KISSLLHPGGILVVEPQPWKSYKKAARRSE 223 (288)
T ss_pred HHHHhhCcCcEEEEcCCchHHHHHHHHHHH
Confidence 999999999999983224443334444443
No 194
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.5e-08 Score=83.12 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=99.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.|+.+|+|-|+|+|.++.++++.++ |..+++.+|......+.|.+-++.+++.. ++.+.|+....-......+|.
T Consensus 104 ~PGsvV~EsGTGSGSlShaiaraV~---ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDa 180 (314)
T KOG2915|consen 104 RPGSVVLESGTGSGSLSHAIARAVA---PTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADA 180 (314)
T ss_pred CCCCEEEecCCCcchHHHHHHHhhC---cCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccce
Confidence 6899999999999999999999874 67799999999999999999999999865 788888765532222467999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCCHHHHHHHHHHcCCcEEEEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTANDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 197 (256)
|+.+.|- ....+..+.+.||.+| +++-.++...+.......+.++||..+...
T Consensus 181 VFLDlPa--------------------------Pw~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~~i~~v 234 (314)
T KOG2915|consen 181 VFLDLPA--------------------------PWEAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFIEIETV 234 (314)
T ss_pred EEEcCCC--------------------------hhhhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCceEEEE
Confidence 9998772 2244555666888776 666655555555667788888899765544
Q ss_pred e
Q 025211 198 Q 198 (256)
Q Consensus 198 ~ 198 (256)
.
T Consensus 235 E 235 (314)
T KOG2915|consen 235 E 235 (314)
T ss_pred E
Confidence 3
No 195
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.98 E-value=4.8e-09 Score=84.09 Aligned_cols=136 Identities=12% Similarity=0.073 Sum_probs=88.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...++||.|+|.|.++-.+ |.+ ..+ .|..+|..+..++.|++.+....... ++.+..+.++.++ +++||+|+
T Consensus 55 ~~~~alDcGAGIGRVTk~l---Ll~-~f~-~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~--~~~YDlIW 127 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGL---LLP-VFD-EVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPE--EGKYDLIW 127 (218)
T ss_dssp --SEEEEET-TTTHHHHHT---CCC-C-S-EEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------TT-EEEEE
T ss_pred CcceEEecccccchhHHHH---HHH-hcC-EeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCC--CCcEeEEE
Confidence 5689999999999986433 222 222 89999999999999997655422232 7888888877654 47899999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC---------------CCHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA---------------NDPSQICLQ 185 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~---------------~~~~~~~~~ 185 (256)
+.-...+..+. .+-.+|++|...|+|+|.+++-.... +......++
T Consensus 128 ~QW~lghLTD~-------------------dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~l 188 (218)
T PF05891_consen 128 IQWCLGHLTDE-------------------DLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFREL 188 (218)
T ss_dssp EES-GGGS-HH-------------------HHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHH
T ss_pred ehHhhccCCHH-------------------HHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHH
Confidence 96544433332 36799999999999999999844211 124578999
Q ss_pred HHHcCCcEEEEEecCCCC
Q 025211 186 MMEKGYAARIVVQRSTEE 203 (256)
Q Consensus 186 ~~~~g~~~~~~~~~~~~~ 203 (256)
+++.|+.++....+..-+
T Consensus 189 F~~AGl~~v~~~~Q~~fP 206 (218)
T PF05891_consen 189 FKQAGLRLVKEEKQKGFP 206 (218)
T ss_dssp HHHCT-EEEEEEE-TT--
T ss_pred HHHcCCEEEEeccccCCC
Confidence 999999987766554433
No 196
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.97 E-value=2.2e-08 Score=80.45 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=85.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh----cCCC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~----~~~~ 115 (256)
.++++||+|.-||.-++..|..+. +++.|+++|++++.++.+.+..+..++.. ++++++..+.+.+. ..++
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp---~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~t 149 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALP---EDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGT 149 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcC---CCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCc
Confidence 679999999999999999988874 36799999999999999998888888765 89999988776543 3578
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+++.+- ....+..+.+++.+++++||++++
T Consensus 150 fDfaFvDa------------------------dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 150 FDFAFVDA------------------------DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred eeEEEEcc------------------------chHHHHHHHHHHHhhcccccEEEE
Confidence 99999851 123355889999999999999998
No 197
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.94 E-value=5.4e-09 Score=83.76 Aligned_cols=127 Identities=21% Similarity=0.301 Sum_probs=75.1
Q ss_pred hHHHHHHHHH-hhcccccCCCCEEEEecccccHHHHHHHHHhcc----cCC-CceEEEEeCCHHHHHHHHHHH-------
Q 025211 24 SFALVDALLA-DRINLVEHHPVLCMEVGCGSGYVITSLALMLGQ----EVP-GVQYIATDINPYAVEVTRKTL------- 90 (256)
Q Consensus 24 ~~~l~~~l~~-~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~----~~~-~~~v~giD~~~~~i~~a~~~~------- 90 (256)
.+.+.+.+++ .+......+..+|+.+||+||.-+-.+|..+.+ ..+ ..+|+|+|+|+.+++.|++-+
T Consensus 12 f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~ 91 (196)
T PF01739_consen 12 FEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLR 91 (196)
T ss_dssp HHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGT
T ss_pred HHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence 5667777774 332222246789999999999866666665544 112 579999999999999997721
Q ss_pred -------HHc-------CC--------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025211 91 -------EAH-------NV--------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 91 -------~~~-------~~--------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
... .. ...|...|+.+. ....+.||+|+|-=... +| .
T Consensus 92 ~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~--~~~~~~fD~I~CRNVlI--------------YF-----~ 150 (196)
T PF01739_consen 92 GLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDP--DPPFGRFDLIFCRNVLI--------------YF-----D 150 (196)
T ss_dssp TS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S--------EEEEEE-SSGG--------------GS------
T ss_pred hhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCC--CcccCCccEEEecCEEE--------------Ee-----C
Confidence 110 11 116778888772 22347899999932221 22 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025211 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......+++.+++.|+|||.+++
T Consensus 151 ~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 151 PETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEE
Confidence 23468999999999999999998
No 198
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.92 E-value=8.1e-09 Score=89.28 Aligned_cols=122 Identities=20% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------C----CcceEEEcchhhchh-
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------N----VHADLINTDIASGLE- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~----~~~~~~~~d~~~~~~- 109 (256)
++.+|||+|||-|.- +.+.... .. ..++|+|++.+.++.|+++.... . ....++.+|......
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~ 136 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLR 136 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHH
T ss_pred CCCeEEEecCCCchh---HHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhh
Confidence 789999999998875 3444322 22 38999999999999999988321 1 122678887764421
Q ss_pred -hhcC--CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 110 -KRLA--GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 110 -~~~~--~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+.+ ..||+|-|...++..-.. ......++..+.+.|+|||+++.+++ ....+...+
T Consensus 137 ~~~~~~~~~FDvVScQFalHY~Fes-----------------e~~ar~~l~Nvs~~Lk~GG~FIgT~~---d~~~i~~~l 196 (331)
T PF03291_consen 137 EKLPPRSRKFDVVSCQFALHYAFES-----------------EEKARQFLKNVSSLLKPGGYFIGTTP---DSDEIVKRL 196 (331)
T ss_dssp CTSSSTTS-EEEEEEES-GGGGGSS-----------------HHHHHHHHHHHHHTEEEEEEEEEEEE----HHHHHCCH
T ss_pred hhccccCCCcceeehHHHHHHhcCC-----------------HHHHHHHHHHHHHhcCCCCEEEEEec---CHHHHHHHH
Confidence 1222 489999997554432221 33467899999999999999999876 345555555
Q ss_pred HH
Q 025211 187 ME 188 (256)
Q Consensus 187 ~~ 188 (256)
.+
T Consensus 197 ~~ 198 (331)
T PF03291_consen 197 RE 198 (331)
T ss_dssp HC
T ss_pred Hh
Confidence 44
No 199
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=8.1e-09 Score=81.59 Aligned_cols=113 Identities=20% Similarity=0.266 Sum_probs=83.7
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--------c--
Q 025211 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--------H-- 96 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--------~-- 96 (256)
+...+++++... -.++.+.||+|+|||.++.+++.+++. ++...+|||.-++.++.+++|+...-. +
T Consensus 68 mha~~le~L~~~-L~pG~s~LdvGsGSGYLt~~~~~mvg~--~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~ 144 (237)
T KOG1661|consen 68 MHATALEYLDDH-LQPGASFLDVGSGSGYLTACFARMVGA--TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRG 144 (237)
T ss_pred HHHHHHHHHHHh-hccCcceeecCCCccHHHHHHHHHhcC--CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccC
Confidence 334444444311 158999999999999999999988873 454569999999999999999976541 1
Q ss_pred -ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 97 -ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 97 -~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
..++.+|......+ ...||.|.+.-- ...+.+.+...|++||++++
T Consensus 145 ~l~ivvGDgr~g~~e--~a~YDaIhvGAa---------------------------a~~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 145 ELSIVVGDGRKGYAE--QAPYDAIHVGAA---------------------------ASELPQELLDQLKPGGRLLI 191 (237)
T ss_pred ceEEEeCCccccCCc--cCCcceEEEccC---------------------------ccccHHHHHHhhccCCeEEE
Confidence 16888888777554 478999988410 23556677778999999988
No 200
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.92 E-value=1.3e-08 Score=84.56 Aligned_cols=99 Identities=22% Similarity=0.299 Sum_probs=76.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+..+|+|||+|+|.+++.+++. +|+.+++..|. |..++.+++ .-..+++.+|+.+.. +. +|+++.
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~v~Dl-p~v~~~~~~-----~~rv~~~~gd~f~~~----P~-~D~~~l 164 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARA----YPNLRATVFDL-PEVIEQAKE-----ADRVEFVPGDFFDPL----PV-ADVYLL 164 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHH----STTSEEEEEE--HHHHCCHHH-----TTTEEEEES-TTTCC----SS-ESEEEE
T ss_pred CccEEEeccCcchHHHHHHHHH----CCCCcceeecc-Hhhhhcccc-----ccccccccccHHhhh----cc-ccceee
Confidence 5579999999999998888777 99999999998 888888877 223489999998432 23 999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC--eEEEEEEe
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR--GWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg--G~l~~~~~ 174 (256)
.--++..++. ....+|+++++.|+|| |+++++..
T Consensus 165 ~~vLh~~~d~-------------------~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 165 RHVLHDWSDE-------------------DCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp ESSGGGS-HH-------------------HHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred ehhhhhcchH-------------------HHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 6555444332 2678999999999999 99999775
No 201
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.91 E-value=2.6e-08 Score=79.26 Aligned_cols=126 Identities=14% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+...|.|+|||.+.++ +.+. .+.+|+.+|+... +..+..+|+... |..++++|++|+
T Consensus 72 ~~~viaD~GCGdA~la----~~~~---~~~~V~SfDLva~--------------n~~Vtacdia~v--PL~~~svDv~Vf 128 (219)
T PF05148_consen 72 KSLVIADFGCGDAKLA----KAVP---NKHKVHSFDLVAP--------------NPRVTACDIANV--PLEDESVDVAVF 128 (219)
T ss_dssp TTS-EEEES-TT-HHH----HH-----S---EEEEESS-S--------------STTEEES-TTS---S--TT-EEEEEE
T ss_pred CCEEEEECCCchHHHH----Hhcc---cCceEEEeeccCC--------------CCCEEEecCccC--cCCCCceeEEEE
Confidence 4579999999999964 4332 2347999998652 127888999776 445789999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--CCHHHHHHHHHHcCCcEEEEEec
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--NDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.-.-- ..+..++.++.++||+||.+.+.+... ...+...+.+...||+.....
T Consensus 129 cLSLMG----------------------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~GF~~~~~d-- 184 (219)
T PF05148_consen 129 CLSLMG----------------------TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLGFKLKSKD-- 184 (219)
T ss_dssp ES---S----------------------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTTEEEEEEE--
T ss_pred EhhhhC----------------------CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCCCeEEecc--
Confidence 643211 127899999999999999999977644 345678888889999876532
Q ss_pred CCCCccEEEEEEEecC
Q 025211 200 STEEENLHIIKFWRDF 215 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~ 215 (256)
.....+++.++.|..
T Consensus 185 -~~n~~F~~f~F~K~~ 199 (219)
T PF05148_consen 185 -ESNKHFVLFEFKKIR 199 (219)
T ss_dssp ---STTEEEEEEEE-S
T ss_pred -cCCCeEEEEEEEEcC
Confidence 334577888888766
No 202
>PRK04148 hypothetical protein; Provisional
Probab=98.91 E-value=1.8e-08 Score=75.21 Aligned_cols=83 Identities=20% Similarity=0.218 Sum_probs=61.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccH-HHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGY-VITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~-~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
.+++++.+.+. ..++.+|+|+|||+|. ++..+++. +..|+|+|+++.+++.++++. .+++.+|+
T Consensus 3 ~i~~~l~~~~~---~~~~~kileIG~GfG~~vA~~L~~~------G~~ViaIDi~~~aV~~a~~~~------~~~v~dDl 67 (134)
T PRK04148 3 TIAEFIAENYE---KGKNKKIVELGIGFYFKVAKKLKES------GFDVIVIDINEKAVEKAKKLG------LNAFVDDL 67 (134)
T ss_pred HHHHHHHHhcc---cccCCEEEEEEecCCHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhC------CeEEECcC
Confidence 35666666543 3466899999999996 66555543 569999999999998887752 38999999
Q ss_pred hhchhhhcCCCccEEEE-CCC
Q 025211 105 ASGLEKRLAGLVDVMVV-NPP 124 (256)
Q Consensus 105 ~~~~~~~~~~~fD~Ii~-npP 124 (256)
++..... -+.+|+|.+ .||
T Consensus 68 f~p~~~~-y~~a~liysirpp 87 (134)
T PRK04148 68 FNPNLEI-YKNAKLIYSIRPP 87 (134)
T ss_pred CCCCHHH-HhcCCEEEEeCCC
Confidence 8875442 367999997 444
No 203
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.90 E-value=1.5e-07 Score=76.63 Aligned_cols=132 Identities=18% Similarity=0.263 Sum_probs=82.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++||=+|=.- ..+++++.. ++..+|+.+|+++..++..++...+.|++.+.+..|+.+.+++...++||+++
T Consensus 43 L~gk~il~lGDDD-LtSlA~al~----~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 43 LEGKRILFLGDDD-LTSLALALT----GLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFF 117 (243)
T ss_dssp STT-EEEEES-TT--HHHHHHHH----T--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEE
T ss_pred ccCCEEEEEcCCc-HHHHHHHhh----CCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEE
Confidence 3689999888433 345555543 34469999999999999999999999999999999999999887789999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeCCCC--H---HHHHHHHHHcCCcEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLTAND--P---SQICLQMMEKGYAAR 194 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~~~~--~---~~~~~~~~~~g~~~~ 194 (256)
++|||- ..-+.-|+.+..+.||..| ..++ ..+... . .++++.+.+.|+-..
T Consensus 118 TDPPyT----------------------~~G~~LFlsRgi~~Lk~~g~~gy~-~~~~~~~s~~~~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 118 TDPPYT----------------------PEGLKLFLSRGIEALKGEGCAGYF-GFTHKEASPDKWLEVQRFLLEMGLVIT 174 (243)
T ss_dssp E---SS----------------------HHHHHHHHHHHHHTB-STT-EEEE-EE-TTT--HHHHHHHHHHHHTS--EEE
T ss_pred eCCCCC----------------------HHHHHHHHHHHHHHhCCCCceEEE-EEecCcCcHHHHHHHHHHHHHCCcCHH
Confidence 999985 2336788999999999877 4444 333332 2 257788888898876
Q ss_pred EEEecC
Q 025211 195 IVVQRS 200 (256)
Q Consensus 195 ~~~~~~ 200 (256)
.+.+..
T Consensus 175 dii~~F 180 (243)
T PF01861_consen 175 DIIPDF 180 (243)
T ss_dssp EEEEEE
T ss_pred HHHhhh
Confidence 666543
No 204
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.88 E-value=4.3e-09 Score=84.91 Aligned_cols=119 Identities=18% Similarity=0.193 Sum_probs=75.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhhcCCCccEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.+.++|+|||+|.-++.++.. ++ +|+|+|+|+.|++.|++....... +..+...++.+.... ++++|+|+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~-----~k-~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~--e~SVDlI~ 105 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEH-----YK-EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGG--EESVDLIT 105 (261)
T ss_pred cceEEEeccCCCcchHHHHHh-----hh-hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCC--Ccceeeeh
Confidence 349999999999866666665 33 799999999999998875432221 124444444443222 68999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe-EEEEEEeC--CCCHHHHHHHHHHcCC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG-WLYLVTLT--ANDPSQICLQMMEKGY 191 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG-~l~~~~~~--~~~~~~~~~~~~~~g~ 191 (256)
|-=. .+ +-.++++.+.+.++|++.| .+.+.... ...-.+....+.+...
T Consensus 106 ~Aqa----------------~H------WFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~ 157 (261)
T KOG3010|consen 106 AAQA----------------VH------WFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD 157 (261)
T ss_pred hhhh----------------HH------hhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh
Confidence 8311 11 1237899999999999887 54443322 1122355555555433
No 205
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.87 E-value=2.9e-08 Score=83.32 Aligned_cols=139 Identities=19% Similarity=0.154 Sum_probs=93.2
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-C------Ccce
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-N------VHAD 98 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~------~~~~ 98 (256)
-+-.||...+-....+++..++|+|||-|.-++-.-+. +- ..++|+||.+..++.|+++.... + .+..
T Consensus 101 nfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kA----gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 101 NFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKA----GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred hhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhh----cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeE
Confidence 34455555543334468899999999999874333222 22 37999999999999998876532 1 1237
Q ss_pred EEEcchhhchh----hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 99 LINTDIASGLE----KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 99 ~~~~d~~~~~~----~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
++.+|...... ++.+-+||+|-|...++..-..+ .-..-++..+...|+|||+++-..|
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFete-----------------e~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE-----------------ESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccH-----------------HHHHHHHHHHHhhcCCCcEEEEecC
Confidence 88888765432 11234499999977665432221 2256789999999999999998766
Q ss_pred CCCCHHHHHHHHHHc
Q 025211 175 TANDPSQICLQMMEK 189 (256)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (256)
....+...++..
T Consensus 239 ---dsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 239 ---DSDVIIKRLRAG 250 (389)
T ss_pred ---cHHHHHHHHHhc
Confidence 345666666654
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.86 E-value=7.1e-08 Score=80.29 Aligned_cols=115 Identities=20% Similarity=0.224 Sum_probs=80.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEcchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-----HADLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. .+-.+++++|+++..++.|++.+..... ..+++.+|....+......+
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~----~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~ 150 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH----PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEK 150 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS----TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-
T ss_pred CCcCceEEEcCCChhhhhhhhhc----CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCc
Confidence 46899999999999975544432 3345899999999999999998765321 23899999999887643338
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
||+|+.+.+- +..... .+ ....+++.+.+.|+|||++++-..+.
T Consensus 151 yDvIi~D~~d-p~~~~~--------~l--------~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 151 YDVIIVDLTD-PDGPAP--------NL--------FTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEEEEEESSS-TTSCGG--------GG--------SSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred ccEEEEeCCC-CCCCcc--------cc--------cCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 9999997653 111110 01 14688999999999999999865433
No 207
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.84 E-value=2.4e-07 Score=74.80 Aligned_cols=142 Identities=21% Similarity=0.203 Sum_probs=97.7
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECC
Q 025211 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
|+|+||--|.+++.+.+. +.--.++++|+++.-++.|++++...++.. ++..+|..+.+.+. +..|.|+.-
T Consensus 1 vaDIGtDHgyLpi~L~~~----~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~--e~~d~ivIA- 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN----GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPG--EDVDTIVIA- 73 (205)
T ss_dssp EEEET-STTHHHHHHHHT----TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GG--G---EEEEE-
T ss_pred CceeccchhHHHHHHHhc----CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCC--CCCCEEEEe-
Confidence 689999999999988886 333479999999999999999999998765 88999988876552 237887762
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecCCCC
Q 025211 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRSTEE 203 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 203 (256)
|+ |-....++|+.....++....+++ .| ......+++++.+.||............
T Consensus 74 ---------------------GM-GG~lI~~ILe~~~~~~~~~~~lIL-qP-~~~~~~LR~~L~~~gf~I~~E~lv~e~~ 129 (205)
T PF04816_consen 74 ---------------------GM-GGELIIEILEAGPEKLSSAKRLIL-QP-NTHAYELRRWLYENGFEIIDEDLVEENG 129 (205)
T ss_dssp ---------------------EE--HHHHHHHHHHTGGGGTT--EEEE-EE-SS-HHHHHHHHHHTTEEEEEEEEEEETT
T ss_pred ---------------------cC-CHHHHHHHHHhhHHHhccCCeEEE-eC-CCChHHHHHHHHHCCCEEEEeEEEeECC
Confidence 22 224567888888877777667776 44 4568899999999999987665555555
Q ss_pred ccEEEEEEEecCccc
Q 025211 204 ENLHIIKFWRDFDIQ 218 (256)
Q Consensus 204 ~~~~l~~~~~~~~~~ 218 (256)
-.+.++.+.+.....
T Consensus 130 ~~YeIi~~~~~~~~~ 144 (205)
T PF04816_consen 130 RFYEIIVAERGEEKP 144 (205)
T ss_dssp EEEEEEEEEESSS--
T ss_pred EEEEEEEEEeCCCCC
Confidence 555666666655444
No 208
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.84 E-value=6e-08 Score=75.53 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=60.1
Q ss_pred EEEeCCHHHHHHHHHHHHHcC---C-cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025211 74 IATDINPYAVEVTRKTLEAHN---V-HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 74 ~giD~~~~~i~~a~~~~~~~~---~-~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+|++|++.|+++..... . ..+++++|+.+. ++.+++||+|++..-+.+..+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l--p~~~~~fD~v~~~~~l~~~~d------------------- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL--PFDDCEFDAVTMGYGLRNVVD------------------- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC--CCCCCCeeEEEecchhhcCCC-------------------
Confidence 489999999999987765322 2 248999999876 445678999999754433222
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 150 AVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
...++++++++|||||.+++....
T Consensus 60 --~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 --RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred --HHHHHHHHHHHcCcCeEEEEEECC
Confidence 578899999999999999987643
No 209
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.82 E-value=2.2e-07 Score=73.82 Aligned_cols=122 Identities=23% Similarity=0.310 Sum_probs=70.9
Q ss_pred cccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc----------------------
Q 025211 36 INLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---------------------- 93 (256)
Q Consensus 36 ~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---------------------- 93 (256)
..+....+.+++|+|||+|.++--+... +.+. =..|+|.|+++++++.|++|+...
T Consensus 45 ~~l~~~~p~tLyDPCCG~gyLLTVlGLL-h~~~-l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kp 122 (246)
T PF11599_consen 45 HYLEGKGPYTLYDPCCGSGYLLTVLGLL-HRRR-LRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKP 122 (246)
T ss_dssp CTSSS-S-EEEEETT-TTSHHHHHHHHH-TGGG-EEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--H
T ss_pred HhhcCCCCeeeeccCCCccHHHHHHHHh-hhHH-HHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCc
Confidence 3334567899999999999987666554 2211 137999999999999999876211
Q ss_pred -------------------C--CcceEEEcchhhchhh--h-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025211 94 -------------------N--VHADLINTDIASGLEK--R-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 94 -------------------~--~~~~~~~~d~~~~~~~--~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
| .+..+.+.|+++.... . .....|+|+.+.||....+ +.++.+.
T Consensus 123 s~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~------------W~g~~~~ 190 (246)
T PF11599_consen 123 SHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTS------------WQGEGSG 190 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSS------------TTS---H
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccccc------------ccCCCCC
Confidence 1 1114777787775431 1 1244799999999986443 3333445
Q ss_pred HHHHHHHHHHhhccccCeEEEE
Q 025211 150 AVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+-...++..++.+|-+++++.+
T Consensus 191 ~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 191 GPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHHHHCCS-TT-EEEE
T ss_pred CcHHHHHHHHHhhCCCCcEEEE
Confidence 5678999999999955555555
No 210
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.82 E-value=9.1e-08 Score=73.07 Aligned_cols=127 Identities=19% Similarity=0.121 Sum_probs=95.0
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025211 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
..|+ +..+++.+...+.. ..+.-|||+|.|||.++-++.... .+...++++|+|++-+....+... ..
T Consensus 29 I~Ps--Ss~lA~~M~s~I~p---esglpVlElGPGTGV~TkaIL~~g---v~~~~L~~iE~~~dF~~~L~~~~p----~~ 96 (194)
T COG3963 29 ILPS--SSILARKMASVIDP---ESGLPVLELGPGTGVITKAILSRG---VRPESLTAIEYSPDFVCHLNQLYP----GV 96 (194)
T ss_pred ecCC--cHHHHHHHHhccCc---ccCCeeEEEcCCccHhHHHHHhcC---CCccceEEEEeCHHHHHHHHHhCC----Cc
Confidence 4444 47777888777652 567899999999999987766553 345689999999999887766542 23
Q ss_pred eEEEcchhhch---hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 98 DLINTDIASGL---EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ~~~~~d~~~~~---~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++++|..+.. .++....||.|||..|+-..+-. ...++++.+...|..||.++..+.
T Consensus 97 ~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~-------------------~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 97 NIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH-------------------RRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred cccccchhhHHHHHhhcCCCeeeeEEeccccccCcHH-------------------HHHHHHHHHHHhcCCCCeEEEEEe
Confidence 68888887764 23344569999999988655432 256889999999999999998775
Q ss_pred C
Q 025211 175 T 175 (256)
Q Consensus 175 ~ 175 (256)
+
T Consensus 158 g 158 (194)
T COG3963 158 G 158 (194)
T ss_pred c
Confidence 4
No 211
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=3e-08 Score=82.11 Aligned_cols=91 Identities=20% Similarity=0.166 Sum_probs=69.2
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025211 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
++.+.+... ..++..|||||+|.|.+|..+++. ...|+++|+++.+++..++... ..-+.+++++|+...
T Consensus 19 ~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~------~~~v~aiEiD~~l~~~L~~~~~-~~~n~~vi~~DaLk~ 88 (259)
T COG0030 19 IDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLER------AARVTAIEIDRRLAEVLKERFA-PYDNLTVINGDALKF 88 (259)
T ss_pred HHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhh------cCeEEEEEeCHHHHHHHHHhcc-cccceEEEeCchhcC
Confidence 455555443 245899999999999999998887 3489999999999999988765 222338999999887
Q ss_pred hhhhcCCCccEEEECCCCCCCC
Q 025211 108 LEKRLAGLVDVMVVNPPYVPTP 129 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~ 129 (256)
..+.. ..++.|++|.||+.++
T Consensus 89 d~~~l-~~~~~vVaNlPY~Iss 109 (259)
T COG0030 89 DFPSL-AQPYKVVANLPYNISS 109 (259)
T ss_pred cchhh-cCCCEEEEcCCCcccH
Confidence 43311 1689999999998654
No 212
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.80 E-value=1.9e-07 Score=80.24 Aligned_cols=147 Identities=16% Similarity=0.074 Sum_probs=96.9
Q ss_pred ccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025211 6 AQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 6 ~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
..+..++..|+.|.-|.+...|-+...+-...+ .++..++|+|||+|.-+..+...+.+......++++|+|.++++.
T Consensus 42 ~LFe~It~lpEYYptr~E~~iL~~~~~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~ 119 (319)
T TIGR03439 42 KLFEEITYSPEYYLTNDEIEILKKHSSDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQR 119 (319)
T ss_pred HHHHHHHcCCccCChHHHHHHHHHHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHH
Confidence 345556678888877776666555443333333 356789999999999877777776544445789999999999999
Q ss_pred HHHHHHHcC---CcceEEEcchhhchhhh----cCCCccEEEEC-CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025211 86 TRKTLEAHN---VHADLINTDIASGLEKR----LAGLVDVMVVN-PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 86 a~~~~~~~~---~~~~~~~~d~~~~~~~~----~~~~fD~Ii~n-pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+.+++.... +...-+++|+.+.+... ......+++.- --+.+. .+ .....+|+
T Consensus 120 a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf--------~~-----------~ea~~fL~ 180 (319)
T TIGR03439 120 TLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF--------SR-----------PEAAAFLA 180 (319)
T ss_pred HHHhhhhccCCCeEEEEEEecHHHHHhhcccccccCCccEEEEeCccccCC--------CH-----------HHHHHHHH
Confidence 999887322 33366888887764321 12234555541 111111 11 12568899
Q ss_pred HHhh-ccccCeEEEEEE
Q 025211 158 SADK-LLSKRGWLYLVT 173 (256)
Q Consensus 158 ~~~~-~LkpgG~l~~~~ 173 (256)
.+.+ .|+|||.+++-.
T Consensus 181 ~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 181 GFLATALSPSDSFLIGL 197 (319)
T ss_pred HHHHhhCCCCCEEEEec
Confidence 9999 999999988743
No 213
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.78 E-value=4.2e-08 Score=80.52 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=67.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.+++..|||+|.|||.++..+.+. +.+|+|+|+++.|+....++++-..... +++.+|+...-. -.||
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~----P~fd 125 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEA------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL----PRFD 125 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHh------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC----cccc
Confidence 478999999999999999877765 5699999999999999998876444333 899999987633 3699
Q ss_pred EEEECCCCCCCCC
Q 025211 118 VMVVNPPYVPTPE 130 (256)
Q Consensus 118 ~Ii~npP~~~~~~ 130 (256)
.+|+|.||..++.
T Consensus 126 ~cVsNlPyqISSp 138 (315)
T KOG0820|consen 126 GCVSNLPYQISSP 138 (315)
T ss_pred eeeccCCccccCH
Confidence 9999999987665
No 214
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.77 E-value=2.4e-07 Score=78.16 Aligned_cols=109 Identities=18% Similarity=0.252 Sum_probs=82.3
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Cc---ceEEEcchhhchhhhcCCCcc
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VH---ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~---~~~~~~d~~~~~~~~~~~~fD 117 (256)
+++||-+|-|.|..+.++.+. .+-.+++.+||++..++.+++-+.... .. .+++..|..+++.... .+||
T Consensus 77 pk~VLiiGgGdG~tlRevlkh----~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~-~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKH----LPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCE-EKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhc----CCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCC-CcCC
Confidence 379999999999988777776 344589999999999999999877543 11 2899999999987643 4899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+||++-.-.. . +.. .-+...+.+.|.+.|+++|+++.-.
T Consensus 152 vIi~D~tdp~-g--------p~~--------~Lft~eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 152 VIIVDSTDPV-G--------PAE--------ALFTEEFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred EEEEcCCCCC-C--------ccc--------ccCCHHHHHHHHHhcCCCcEEEEec
Confidence 9999632110 0 000 1124688999999999999999853
No 215
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.76 E-value=5.2e-08 Score=81.47 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=83.7
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC-----CceEEEEeCCHHHHHHHHHHHHH-----c
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP-----GVQYIATDINPYAVEVTRKTLEA-----H 93 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~-----~~~v~giD~~~~~i~~a~~~~~~-----~ 93 (256)
.+.+.+.+++.+..-......+|+-+||+||.-+-.+|..+.+..+ ..+|+|+|||..+++.|+.-+.. .
T Consensus 78 f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~ 157 (268)
T COG1352 78 FEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLR 157 (268)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhc
Confidence 5667777777653211124789999999999765555555544343 58999999999999999752211 1
Q ss_pred CCc-------------------------ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025211 94 NVH-------------------------ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 94 ~~~-------------------------~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
+++ ..|...|+.+..+ ..+.||+|+|-= ...+| .
T Consensus 158 ~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~--~~~~fD~IfCRN--------------VLIYF-----d 216 (268)
T COG1352 158 GLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP--FLGKFDLIFCRN--------------VLIYF-----D 216 (268)
T ss_pred cCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc--ccCCCCEEEEcc--------------eEEee-----C
Confidence 110 0445555554432 457899999921 11122 1
Q ss_pred HHHHHHHHHHHhhccccCeEEEE
Q 025211 149 RAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
......++...+..|+|||.+++
T Consensus 217 ~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 217 EETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEE
Confidence 23478999999999999999998
No 216
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.74 E-value=5.7e-08 Score=82.23 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=75.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC----CCceEEEEeCCHHHHHHHHHHHHH-----------------------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEV----PGVQYIATDINPYAVEVTRKTLEA-----------------------HN 94 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~----~~~~v~giD~~~~~i~~a~~~~~~-----------------------~~ 94 (256)
...+|+..||+||.-+-.+|..+.+.. .+.+|+|+|+|+.+++.|++-+.. .+
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 358999999999986666666554321 247899999999999999874210 00
Q ss_pred ---C----c--ceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc
Q 025211 95 ---V----H--ADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK 165 (256)
Q Consensus 95 ---~----~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp 165 (256)
+ . ..|...|+.+...+ ..+.||+|+|.-.+.+.. ......++..+++.|+|
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~-~~~~fD~I~cRNvliyF~-------------------~~~~~~vl~~l~~~L~p 254 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWA-VPGPFDAIFCRNVMIYFD-------------------KTTQERILRRFVPLLKP 254 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCc-cCCCcceeeHhhHHhcCC-------------------HHHHHHHHHHHHHHhCC
Confidence 0 0 16777777663211 247899999933222211 12367899999999999
Q ss_pred CeEEEE
Q 025211 166 RGWLYL 171 (256)
Q Consensus 166 gG~l~~ 171 (256)
||++++
T Consensus 255 gG~L~l 260 (287)
T PRK10611 255 DGLLFA 260 (287)
T ss_pred CcEEEE
Confidence 998877
No 217
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.72 E-value=2.6e-07 Score=75.37 Aligned_cols=125 Identities=16% Similarity=0.301 Sum_probs=89.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
....|.|+|||-+.+ |.. .+ ..|+.+|+.+. +.+++.+|+.+. +..+++.|++|+
T Consensus 180 ~~~vIaD~GCGEaki----A~~----~~-~kV~SfDL~a~--------------~~~V~~cDm~~v--Pl~d~svDvaV~ 234 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKI----ASS----ER-HKVHSFDLVAV--------------NERVIACDMRNV--PLEDESVDVAVF 234 (325)
T ss_pred CceEEEecccchhhh----hhc----cc-cceeeeeeecC--------------CCceeeccccCC--cCccCcccEEEe
Confidence 568999999999996 332 12 27999997532 237888999886 556799999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCcEEEEEec
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.-.. | ..+..++.++.++|++||.+++.....+ ....+.+.+...||.....
T Consensus 235 CLSLM------------------g----tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~~--- 289 (325)
T KOG3045|consen 235 CLSLM------------------G----TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKHK--- 289 (325)
T ss_pred eHhhh------------------c----ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeeeh---
Confidence 63321 1 1268999999999999999999765443 4456888889999986433
Q ss_pred CCCCccEEEEEEEecCc
Q 025211 200 STEEENLHIIKFWRDFD 216 (256)
Q Consensus 200 ~~~~~~~~l~~~~~~~~ 216 (256)
......+++.++.+-+.
T Consensus 290 d~~n~~F~lfefkK~~~ 306 (325)
T KOG3045|consen 290 DVSNKYFTLFEFKKTPK 306 (325)
T ss_pred hhhcceEEEEEEecCCc
Confidence 23344567777776544
No 218
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.70 E-value=1.2e-06 Score=73.06 Aligned_cols=128 Identities=15% Similarity=0.192 Sum_probs=93.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhh-hcCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEK-RLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~-~~~~~fD 117 (256)
..+.+||||.||.|...+.+....... ...|...|.++..++..++.++..|+.. +|.++|+++...- ...-..+
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~--~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~ 211 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPER--PDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPT 211 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCC--CceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCC
Confidence 578999999999999877777663221 2589999999999999999999999876 9999999876321 1234578
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHH
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMME 188 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~ 188 (256)
++|...-|-..++ .+.....+..+.+.+.|||++++...++. +.+.+...+..
T Consensus 212 l~iVsGL~ElF~D------------------n~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~Lts 265 (311)
T PF12147_consen 212 LAIVSGLYELFPD------------------NDLVRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTS 265 (311)
T ss_pred EEEEecchhhCCc------------------HHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhc
Confidence 8888655533332 23456678899999999999998653333 34445555544
No 219
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.69 E-value=4.2e-07 Score=78.94 Aligned_cols=143 Identities=16% Similarity=0.087 Sum_probs=101.7
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
++++.+|||.|+..|.-+..+|.+++. ...|+|-|.+...++....|+.+.|+.+ .+.+.|..++......++||-
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn---~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR 315 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKN---TGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR 315 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcC---CceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence 579999999999999998888888763 3489999999999999999999999888 777888876643334459999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCC----CCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHH
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGG----ENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMME 188 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~ 188 (256)
|+.+-|..-..- ..+.....+... ..-.....++|..+..++++||+++.++++... .+.+.+++..
T Consensus 316 VLLDAPCSGtgv---i~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~ 388 (460)
T KOG1122|consen 316 VLLDAPCSGTGV---ISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALK 388 (460)
T ss_pred eeecCCCCCCcc---cccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHH
Confidence 999988754111 111111111100 000124668888999999999999999886542 2344555544
No 220
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.69 E-value=3.5e-08 Score=78.54 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=77.8
Q ss_pred cccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc
Q 025211 18 YEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA 97 (256)
Q Consensus 18 ~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~ 97 (256)
++|....+.++......+ ....|+|..||.|..++..+.. ++.|++||++|..+..|+.|++-.|++.
T Consensus 76 vTpe~ia~~iA~~v~~~~------~~~~iidaf~g~gGntiqfa~~------~~~VisIdiDPikIa~AkhNaeiYGI~~ 143 (263)
T KOG2730|consen 76 VTPEKIAEHIANRVVACM------NAEVIVDAFCGVGGNTIQFALQ------GPYVIAIDIDPVKIACARHNAEVYGVPD 143 (263)
T ss_pred eccHHHHHHHHHHHHHhc------CcchhhhhhhcCCchHHHHHHh------CCeEEEEeccHHHHHHHhccceeecCCc
Confidence 344333555555554443 4578999999999999988887 3489999999999999999999999886
Q ss_pred --eEEEcchhhchhhh--cCCCccEEEECCCCCCCCC
Q 025211 98 --DLINTDIASGLEKR--LAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 98 --~~~~~d~~~~~~~~--~~~~fD~Ii~npP~~~~~~ 130 (256)
.++++|+.+..... ....+|+++..||+.-.+-
T Consensus 144 rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 144 RITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred eeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence 99999999886543 2345789999999865443
No 221
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.67 E-value=3.6e-06 Score=67.82 Aligned_cols=169 Identities=16% Similarity=0.205 Sum_probs=105.3
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025211 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. +..|+..++.-+..++-+++.+||-+|.++|+-.-.++..++ ++..|+|+|.++...+..-...+ ...
T Consensus 47 eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg---~~G~VYaVEfs~r~~rdL~~la~-~R~ 122 (229)
T PF01269_consen 47 EYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVG---PDGVVYAVEFSPRSMRDLLNLAK-KRP 122 (229)
T ss_dssp EEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHT---TTSEEEEEESSHHHHHHHHHHHH-HST
T ss_pred ceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccC---CCCcEEEEEecchhHHHHHHHhc-cCC
Confidence 6666666 788999888887777778999999999999998777888764 56799999999987665543322 222
Q ss_pred cceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 96 HADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+..|+..+.. ...-+.+|+|+++-..- + -..-++.++...||+||.++++..
T Consensus 123 NIiPIl~DAr~P~~Y~~lv~~VDvI~~DVaQp--------------------~---Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 123 NIIPILEDARHPEKYRMLVEMVDVIFQDVAQP--------------------D---QARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp TEEEEES-TTSGGGGTTTS--EEEEEEE-SST--------------------T---HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeeeccCCChHHhhcccccccEEEecCCCh--------------------H---HHHHHHHHHHhhccCCcEEEEEEe
Confidence 33567778776532 11235899999974321 0 134557788889999999998764
Q ss_pred CC-----CCHH----HHHHHHHHcCCcEEE-EEecCCCCccEEEEEEE
Q 025211 175 TA-----NDPS----QICLQMMEKGYAARI-VVQRSTEEENLHIIKFW 212 (256)
Q Consensus 175 ~~-----~~~~----~~~~~~~~~g~~~~~-~~~~~~~~~~~~l~~~~ 212 (256)
.. ..++ ...+.+++.+|+... +.......++..++...
T Consensus 180 a~siD~t~~p~~vf~~e~~~L~~~~~~~~e~i~LePy~~dH~~vv~~y 227 (229)
T PF01269_consen 180 ARSIDSTADPEEVFAEEVKKLKEEGFKPLEQITLEPYERDHAMVVGRY 227 (229)
T ss_dssp HHHH-SSSSHHHHHHHHHHHHHCTTCEEEEEEE-TTTSTTEEEEEEEE
T ss_pred cCcccCcCCHHHHHHHHHHHHHHcCCChheEeccCCCCCCcEEEEEEe
Confidence 21 1222 335555666888744 55556666676665443
No 222
>PRK10742 putative methyltransferase; Provisional
Probab=98.65 E-value=7.4e-07 Score=73.26 Aligned_cols=82 Identities=16% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCC--EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------CC---c-ceEEEcchhhchh
Q 025211 42 HPV--LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------NV---H-ADLINTDIASGLE 109 (256)
Q Consensus 42 ~~~--~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------~~---~-~~~~~~d~~~~~~ 109 (256)
++. +|||+-+|+|..++.++.. ++.|+++|-++.+....++++... +. . .+++++|..+.+.
T Consensus 86 ~g~~p~VLD~TAGlG~Da~~las~------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~ 159 (250)
T PRK10742 86 GDYLPDVVDATAGLGRDAFVLASV------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALT 159 (250)
T ss_pred CCCCCEEEECCCCccHHHHHHHHc------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHh
Confidence 444 9999999999999988876 678999999999999999999874 21 2 3888999999876
Q ss_pred hhcCCCccEEEECCCCCCCCC
Q 025211 110 KRLAGLVDVMVVNPPYVPTPE 130 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~ 130 (256)
.. ..+||+|+++|||-+...
T Consensus 160 ~~-~~~fDVVYlDPMfp~~~k 179 (250)
T PRK10742 160 DI-TPRPQVVYLDPMFPHKQK 179 (250)
T ss_pred hC-CCCCcEEEECCCCCCCcc
Confidence 53 347999999999976543
No 223
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.64 E-value=2.1e-07 Score=79.02 Aligned_cols=90 Identities=19% Similarity=0.207 Sum_probs=67.3
Q ss_pred HHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhh
Q 025211 27 LVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIAS 106 (256)
Q Consensus 27 l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~ 106 (256)
|.+.+++.+. ..++..++|.+||.|..+..+++.+ .+++.|+|+|.++++++.+++++.. .-...++++|+.+
T Consensus 7 ll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~---~~~g~VigiD~D~~al~~ak~~L~~-~~ri~~i~~~f~~ 79 (296)
T PRK00050 7 LLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERL---GPKGRLIAIDRDPDAIAAAKDRLKP-FGRFTLVHGNFSN 79 (296)
T ss_pred cHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhC---CCCCEEEEEcCCHHHHHHHHHhhcc-CCcEEEEeCCHHH
Confidence 3444555543 2577899999999999999888873 1357999999999999999988765 2234899999888
Q ss_pred chhhhcC--CCccEEEECC
Q 025211 107 GLEKRLA--GLVDVMVVNP 123 (256)
Q Consensus 107 ~~~~~~~--~~fD~Ii~np 123 (256)
......+ .++|.|++|.
T Consensus 80 l~~~l~~~~~~vDgIl~DL 98 (296)
T PRK00050 80 LKEVLAEGLGKVDGILLDL 98 (296)
T ss_pred HHHHHHcCCCccCEEEECC
Confidence 7533222 2799999965
No 224
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.64 E-value=1.3e-07 Score=79.76 Aligned_cols=102 Identities=22% Similarity=0.301 Sum_probs=74.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
..++.|||+|||+|.+++.+++. + ...|+++|-| +|.+.|++.++.|.+.. .++.+.+.+.-. +++.|+
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqA----G-A~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL---PEk~Dv 246 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQA----G-AKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIEL---PEKVDV 246 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHh----C-cceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccC---chhccE
Confidence 46799999999999999888886 2 2389999975 58899999999887654 788888887743 478999
Q ss_pred EEECCC-CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 119 MVVNPP-YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 119 Ii~npP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+.|- |.-. ....++.++. ..+.|||.|..+-
T Consensus 247 iISEPMG~mL~-------------------NERMLEsYl~-Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 247 IISEPMGYMLV-------------------NERMLESYLH-ARKWLKPNGKMFP 280 (517)
T ss_pred EEeccchhhhh-------------------hHHHHHHHHH-HHhhcCCCCcccC
Confidence 999652 1100 0112333333 3489999999874
No 225
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.63 E-value=1.1e-07 Score=78.01 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=33.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV 85 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~ 85 (256)
.++++|||+|||||.++..+++. + ...|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~----g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK----G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc----C-CCEEEEEeCCHHHHHH
Confidence 46789999999999999888775 2 2489999999988764
No 226
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.61 E-value=1.4e-07 Score=73.88 Aligned_cols=105 Identities=20% Similarity=0.294 Sum_probs=82.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|||+|+|+|..++..++.. ...|++.|+.|..+...+-|++.|+....+...|... . +..||+|+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-----A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~----~~~~Dl~L 147 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-----AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-S----PPAFDLLL 147 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-----hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-C----CcceeEEE
Confidence 368999999999999999888873 2379999999999999999999999888888888765 2 35799999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
..-.|+..+ ...+++. +...|+..|..+++..+.+
T Consensus 148 agDlfy~~~---------------------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 148 AGDLFYNHT---------------------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred eeceecCch---------------------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 976665432 2445566 7777888888777654443
No 227
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.58 E-value=5.7e-07 Score=74.00 Aligned_cols=94 Identities=20% Similarity=0.186 Sum_probs=65.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...++||||+|.|.++..++.. +. +|+++|.|+.|....++ .|. +++ +..+... .+.+||+|.|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~----f~--~v~aTE~S~~Mr~rL~~----kg~--~vl--~~~~w~~--~~~~fDvIsc 157 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL----FK--EVYATEASPPMRWRLSK----KGF--TVL--DIDDWQQ--TDFKFDVISC 157 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh----cc--eEEeecCCHHHHHHHHh----CCC--eEE--ehhhhhc--cCCceEEEee
Confidence 5689999999999999888876 33 69999999999765544 333 222 2222211 2358999998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
-=. + +.......+|+.+++.|+|+|++++.
T Consensus 158 LNv-----------------L----DRc~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 158 LNV-----------------L----DRCDRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred hhh-----------------h----hccCCHHHHHHHHHHHhCCCCEEEEE
Confidence 210 0 01112568899999999999998873
No 228
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.56 E-value=4.4e-07 Score=68.96 Aligned_cols=150 Identities=15% Similarity=0.118 Sum_probs=98.5
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-
Q 025211 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA- 97 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~- 97 (256)
...|..+.++-.++...+. -.+.+|||+|.|--++ ...+++..-|...|...|-++++++..++....|-...
T Consensus 9 ciwpseeala~~~l~~~n~---~rg~~ilelgggft~l---aglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 9 CIWPSEEALAWTILRDPNK---IRGRRILELGGGFTGL---AGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSL 82 (201)
T ss_pred EecccHHHHHHHHHhchhH---HhHHHHHHhcCchhhh---hhhheeeecCCceEEEecCCHHHHHHHHHHHhccccccc
Confidence 4455567777777777543 3578999999985443 23344444677799999999999999988877763322
Q ss_pred ---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 98 ---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 98 ---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.+...+...........+||+|+|-- +.|+ -+...++++.++.+|+|.|..++..|
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaAD----------------ClFf-----dE~h~sLvdtIk~lL~p~g~Al~fsP 141 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAAD----------------CLFF-----DEHHESLVDTIKSLLRPSGRALLFSP 141 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEecc----------------chhH-----HHHHHHHHHHHHHHhCcccceeEecC
Confidence 34444444333333456899999832 2221 12357889999999999999888766
Q ss_pred CCC-CHHHHHHHHHHcCCcEEE
Q 025211 175 TAN-DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 175 ~~~-~~~~~~~~~~~~g~~~~~ 195 (256)
... ....+.+.....||....
T Consensus 142 RRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 142 RRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred cccchHHHHHHHHHhceeEEEe
Confidence 332 334555666666765443
No 229
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.53 E-value=3.7e-06 Score=63.20 Aligned_cols=94 Identities=27% Similarity=0.277 Sum_probs=63.1
Q ss_pred eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcH
Q 025211 72 QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGR 149 (256)
Q Consensus 72 ~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
+|+|+||.+++++.+++++...++.. ++++.+-.....-...+++|+++.|.-|.+-.+..... .-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T------------~~ 68 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITT------------KP 68 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--------------H
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCc------------Cc
Confidence 58999999999999999999988754 77776655543322224899999999988776654321 12
Q ss_pred HHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 150 AVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 150 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+.....++.+.++|+|||++.++.....
T Consensus 69 ~TTl~Al~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 69 ETTLKALEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHHHHHHHHhhccCCEEEEEEeCCC
Confidence 2356788999999999999998776443
No 230
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=98.52 E-value=3.9e-06 Score=70.51 Aligned_cols=186 Identities=16% Similarity=0.275 Sum_probs=108.3
Q ss_pred cccceeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCCE--EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025211 5 TAQIRLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVL--CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~--VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~ 81 (256)
+.++. +++.++.+.|+.. ..-++-|+-+.+..-...++.. -+|||+|+.++ .-.++.+-.++...++|+++.
T Consensus 63 Dfgl~-veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci----~~llg~rq~n~~f~~teidd~ 137 (419)
T KOG2912|consen 63 DFGLS-VEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCI----YPLLGARQNNWYFLATEIDDM 137 (419)
T ss_pred ccCce-EecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhh----HHhhhchhccceeeeeecccc
Confidence 34444 7899999999988 5555566666654322222322 48999999885 333444445689999999999
Q ss_pred HHHHHHHHHHHcCCcc--eEEEcchhhc-----hhhhcCCCccEEEECCCCCCCCCccc-------ccccchhhhcCCCC
Q 025211 82 AVEVTRKTLEAHNVHA--DLINTDIASG-----LEKRLAGLVDVMVVNPPYVPTPEDEV-------GREGIASAWAGGEN 147 (256)
Q Consensus 82 ~i~~a~~~~~~~~~~~--~~~~~d~~~~-----~~~~~~~~fD~Ii~npP~~~~~~~~~-------~~~~~~~~~~~~~~ 147 (256)
.+..|..|+.+|++.. .+++....+. .....+..||+.+|||||+....+.. ....+.....++..
T Consensus 138 s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPPFfe~~~Ea~~n~~~s~~rtpp~~vc~gg~~ 217 (419)
T KOG2912|consen 138 SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPPFFENQLEAKGNNSRSPRRTPPSSVCTGGSQ 217 (419)
T ss_pred ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCCchhhchhhhccccccCCCCCCcccccccchh
Confidence 9999999999998765 3333322211 11112345999999999998733211 11222222233211
Q ss_pred ------cH-HHHHHHHHHHhhccccCeEEEEEEeC-CCCHHHHHHHHHHcCCcEEEE
Q 025211 148 ------GR-AVIDKILPSADKLLSKRGWLYLVTLT-ANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 148 ------~~-~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 196 (256)
|. .+..+++.... .|+.+=+.|-++.+ ......+...+.+.|.....+
T Consensus 218 e~v~eggev~fvnRiitds~-~lr~~IrwYT~MlGKKsslk~l~~kL~e~gv~kv~i 273 (419)
T KOG2912|consen 218 EFVSEGGEVSFVNRIITDSF-VLRKRIRWYTCMLGKKSSLKPLISKLREQGVTKVKI 273 (419)
T ss_pred HHHhhccHHHHHHHHHHHHH-HhhhcceEEeeecccccccHHHHHHHHHcCCceEEE
Confidence 11 12223333322 34555555544432 234557788888888654433
No 231
>PRK00536 speE spermidine synthase; Provisional
Probab=98.51 E-value=2.9e-06 Score=70.90 Aligned_cols=94 Identities=6% Similarity=-0.110 Sum_probs=69.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcc---eEEEcchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHA---DLINTDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~---~~~~~d~~~~~~~~~~~~ 115 (256)
..+++||=+|-|.|..+.++.+. +. +|+.+||++++++.+++-+... +++. +++. . ......++
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-----~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~---~~~~~~~~ 139 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-----DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--Q---LLDLDIKK 139 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-----CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--h---hhhccCCc
Confidence 56799999999999986666553 54 9999999999999999955432 2222 4433 1 11212368
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
||+||++..| -..+.+.+.+.|+|||+++.
T Consensus 140 fDVIIvDs~~--------------------------~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 140 YDLIICLQEP--------------------------DIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred CCEEEEcCCC--------------------------ChHHHHHHHHhcCCCcEEEE
Confidence 9999998432 24667889999999999998
No 232
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.51 E-value=1.2e-06 Score=69.53 Aligned_cols=146 Identities=15% Similarity=0.109 Sum_probs=75.8
Q ss_pred HHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc-
Q 025211 30 ALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG- 107 (256)
Q Consensus 30 ~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~- 107 (256)
.+.+.+..+...++.+|||+||++|.++-.+.+.. .+.+.|+|+|+.+.. ..+. ..+++|+.+.
T Consensus 11 ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~---~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 11 EIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRG---GPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTST---TTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEE
T ss_pred HHHHHCCCCCcccccEEEEcCCcccceeeeeeecc---cccceEEEEeccccc-----------cccceeeeecccchhh
Confidence 34444443333366999999999999987776653 245799999998871 1111 3333443221
Q ss_pred ----hhhhc---CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH
Q 025211 108 ----LEKRL---AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS 180 (256)
Q Consensus 108 ----~~~~~---~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 180 (256)
..... .+.+|+|+|+.-........ .... .........+..+...|++||.+++-........
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~-~d~~---------~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~ 146 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRN-IDEF---------ISIRLILSQLLLALELLKPGGTFVIKVFKGPEIE 146 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHH-SSHH---------HHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSH
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchh-hHHH---------HHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHH
Confidence 11211 26899999986222111100 0000 0112234445566788999998887554433334
Q ss_pred HHHHHHHHcCCcEEEEEec
Q 025211 181 QICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 181 ~~~~~~~~~g~~~~~~~~~ 199 (256)
++...+....-.+..+.+.
T Consensus 147 ~~~~~l~~~F~~v~~~Kp~ 165 (181)
T PF01728_consen 147 ELIYLLKRCFSKVKIVKPP 165 (181)
T ss_dssp HHHHHHHHHHHHEEEEE-T
T ss_pred HHHHHHHhCCeEEEEEECc
Confidence 6666666532233444443
No 233
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.51 E-value=1.2e-06 Score=70.24 Aligned_cols=134 Identities=19% Similarity=0.149 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhhccccc-CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc
Q 025211 24 SFALVDALLADRINLVE-HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT 102 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~-~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~ 102 (256)
+..+++|+.+....... ....++|||||-+....+.. .+-..|+.||+++. ...+.+.
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~-------~~~fdvt~IDLns~--------------~~~I~qq 90 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST-------SGWFDVTRIDLNSQ--------------HPGILQQ 90 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCcccc-------cCceeeEEeecCCC--------------CCCceee
Confidence 78899999887643221 13479999999977653221 22346999999872 1267778
Q ss_pred chhhchhh-hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeE-----EEEEEeCC
Q 025211 103 DIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGW-----LYLVTLTA 176 (256)
Q Consensus 103 d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~-----l~~~~~~~ 176 (256)
|+.+...+ ...++||+|.+.......+++. -...++..+++.|+|+|. ++++.|..
T Consensus 91 DFm~rplp~~~~e~FdvIs~SLVLNfVP~p~------------------~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 91 DFMERPLPKNESEKFDVISLSLVLNFVPDPK------------------QRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred ccccCCCCCCcccceeEEEEEEEEeeCCCHH------------------HHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 88776432 3457899999976655554432 256889999999999999 99988743
Q ss_pred C-------CHHHHHHHHHHcCCcEEEE
Q 025211 177 N-------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 177 ~-------~~~~~~~~~~~~g~~~~~~ 196 (256)
. ..+.+..+|...||.....
T Consensus 153 Cv~NSRy~~~~~l~~im~~LGf~~~~~ 179 (219)
T PF11968_consen 153 CVTNSRYMTEERLREIMESLGFTRVKY 179 (219)
T ss_pred HhhcccccCHHHHHHHHHhCCcEEEEE
Confidence 2 3457788999999986554
No 234
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.42 E-value=7.1e-07 Score=70.33 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=88.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-------Ccc-eEEEcchhhchhhhcC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-------VHA-DLINTDIASGLEKRLA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-------~~~-~~~~~d~~~~~~~~~~ 113 (256)
+...+.|||||-|.+++.++.. +|+..+.|.||-...-+..+++|.... ..+ .+...+....++.++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~----fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~ 135 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPK----FPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFE 135 (249)
T ss_pred ccceEEeeccCccchhhhcccc----CccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhh
Confidence 4578999999999988777776 999999999999999999999888754 333 6777777777665432
Q ss_pred -CCc--cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025211 114 -GLV--DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 -~~f--D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+.. +..+..-|.+..... . .......++.+..-+|++||.++.++............+++..
T Consensus 136 kgqLskmff~fpdpHfk~~kh-------k--------~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hp 200 (249)
T KOG3115|consen 136 KGQLSKMFFLFPDPHFKARKH-------K--------WRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHP 200 (249)
T ss_pred hcccccceeecCChhHhhhhc-------c--------ceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCc
Confidence 222 333222233211111 1 1112356788888899999999998765555555555555555
Q ss_pred C
Q 025211 191 Y 191 (256)
Q Consensus 191 ~ 191 (256)
.
T Consensus 201 l 201 (249)
T KOG3115|consen 201 L 201 (249)
T ss_pred H
Confidence 4
No 235
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.39 E-value=1e-05 Score=74.27 Aligned_cols=172 Identities=20% Similarity=0.260 Sum_probs=98.2
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025211 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.+|+|+.....+++.+... ..++..|.|+.||+|.+.+.....+........++|.|..+.++..++.|+..++.
T Consensus 196 ~~~Tp~~Iv~l~~~~~~~~-----~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 196 EFFTPQDISELLARIAIGK-----KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred eeeCcHHHHHHHHHHhccC-----CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 3667754444433322111 12567999999999999876554432001125799999999999999999887765
Q ss_pred cc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcc-cc-cccchhhhcCCC--CcHHHHHHHHHHHhhccccCeE
Q 025211 96 HA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDE-VG-REGIASAWAGGE--NGRAVIDKILPSADKLLSKRGW 168 (256)
Q Consensus 96 ~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~-~~-~~~~~~~~~~~~--~~~~~~~~~l~~~~~~LkpgG~ 168 (256)
.. ....+|-...........||.|++||||...-... .. ......+|..+. .--..=..++..++..|++||+
T Consensus 271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~ 350 (501)
T TIGR00497 271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGT 350 (501)
T ss_pred CccccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCe
Confidence 42 33344433221111235699999999996532111 00 111122222110 0001123567777889999999
Q ss_pred EEEEEeCCC-----CHHHHHHHHHHcCCc
Q 025211 169 LYLVTLTAN-----DPSQICLQMMEKGYA 192 (256)
Q Consensus 169 l~~~~~~~~-----~~~~~~~~~~~~g~~ 192 (256)
..++.+..- ....++..+..++..
T Consensus 351 ~aiI~~~gvl~~~~~e~~ir~~lL~~~~~ 379 (501)
T TIGR00497 351 AAIVCFPGILYREGKEQTIRKYLVDQNFV 379 (501)
T ss_pred EEEEecCCcccCCCchHHHHHHHHHcCcE
Confidence 887765332 233566666666654
No 236
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.37 E-value=5.8e-07 Score=64.86 Aligned_cols=101 Identities=20% Similarity=0.216 Sum_probs=44.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEECCC
Q 025211 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
||+|+..|..++.+++.+.... ..+++++|..+. .+.+++.++..+.. .+++.++..+.+..+...++|+|+.+-.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~-~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNG-RGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD 78 (106)
T ss_dssp ---------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES-
T ss_pred Cccccccccccccccccccccc-cCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC
Confidence 6899999998888887764321 147999999995 33344444434443 3899999988776654579999999643
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
. ........++.+.+.|+|||++++
T Consensus 79 H----------------------~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 79 H----------------------SYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp ------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred C----------------------CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 2 122356678889999999999887
No 237
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.35 E-value=6.4e-05 Score=60.39 Aligned_cols=127 Identities=19% Similarity=0.240 Sum_probs=96.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+.+++|+||--+.++.++.+. ++-..++++|+++..++.|.+++..+++.. ++..+|....+.. +..+|.|
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~----~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~--~d~~d~i 89 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKN----NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL--EDEIDVI 89 (226)
T ss_pred cCCceeeccCchhHhHHHHHhc----CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc--cCCcCEE
Confidence 4566999999999998887776 666789999999999999999999988764 6777776555432 3479988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEec
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQR 199 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 199 (256)
+.. |+.| .....++++..+.|+.--++++ .+.....+++.++...+|..+....-
T Consensus 90 vIA----------------------GMGG-~lI~~ILee~~~~l~~~~rlIL--QPn~~~~~LR~~L~~~~~~I~~E~il 144 (226)
T COG2384 90 VIA----------------------GMGG-TLIREILEEGKEKLKGVERLIL--QPNIHTYELREWLSANSYEIKAETIL 144 (226)
T ss_pred EEe----------------------CCcH-HHHHHHHHHhhhhhcCcceEEE--CCCCCHHHHHHHHHhCCceeeeeeee
Confidence 772 2222 3467888888888876656666 44566889999999999987554433
No 238
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.35 E-value=8.2e-07 Score=69.19 Aligned_cols=70 Identities=17% Similarity=0.201 Sum_probs=60.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.+.|+|+|+|.+++-++... -+|+++|.+|...+.|.+|+..+|..+ +++.+|+.+. .+ +..|+|+
T Consensus 32 a~d~~~DLGaGsGiLs~~Aa~~A------~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y--~f--e~ADvvi 101 (252)
T COG4076 32 AEDTFADLGAGSGILSVVAAHAA------ERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDY--DF--ENADVVI 101 (252)
T ss_pred hhhceeeccCCcchHHHHHHhhh------ceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccc--cc--cccceeH
Confidence 34889999999999888777752 289999999999999999998888877 9999999887 33 5789999
Q ss_pred E
Q 025211 121 V 121 (256)
Q Consensus 121 ~ 121 (256)
|
T Consensus 102 c 102 (252)
T COG4076 102 C 102 (252)
T ss_pred H
Confidence 9
No 239
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.34 E-value=9.4e-06 Score=68.34 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcch
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDI 104 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~ 104 (256)
..+++.+.+.+.. .++..|||+|+|+|.++..+++.+ .+++++|+++..++..++.+. ..-..+++.+|+
T Consensus 16 ~~~~~~Iv~~~~~---~~~~~VlEiGpG~G~lT~~L~~~~------~~v~~vE~d~~~~~~L~~~~~-~~~~~~vi~~D~ 85 (262)
T PF00398_consen 16 PNIADKIVDALDL---SEGDTVLEIGPGPGALTRELLKRG------KRVIAVEIDPDLAKHLKERFA-SNPNVEVINGDF 85 (262)
T ss_dssp HHHHHHHHHHHTC---GTTSEEEEESSTTSCCHHHHHHHS------SEEEEEESSHHHHHHHHHHCT-TCSSEEEEES-T
T ss_pred HHHHHHHHHhcCC---CCCCEEEEeCCCCccchhhHhccc------CcceeecCcHhHHHHHHHHhh-hcccceeeecch
Confidence 5666777776642 478999999999999999988872 489999999999999888664 222348999999
Q ss_pred hhchhhh-cCCCccEEEECCCCC
Q 025211 105 ASGLEKR-LAGLVDVMVVNPPYV 126 (256)
Q Consensus 105 ~~~~~~~-~~~~fD~Ii~npP~~ 126 (256)
.+..... .......|++|.||.
T Consensus 86 l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp TTSCGGGHCSSSEEEEEEEETGT
T ss_pred hccccHHhhcCCceEEEEEeccc
Confidence 8875431 234677999999984
No 240
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=1.6e-05 Score=68.48 Aligned_cols=149 Identities=16% Similarity=0.127 Sum_probs=97.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchh-------hhc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLE-------KRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~-------~~~ 112 (256)
+++.+|||+|+..|.-++.+.+.+........|++=|.++..+......+......+ .+...|+..... +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 689999999999999998888887543223489999999999988888775544333 344444332211 112
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhh-hcCCC--CcHHHHHHHHHHHhhccccCeEEEEEEeCCCC---HHHHHHHH
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASA-WAGGE--NGRAVIDKILPSADKLLSKRGWLYLVTLTAND---PSQICLQM 186 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~~~ 186 (256)
...||-|+|+-|-........ ....... |.... .-......++....++||+||+++.++++.+. ...+.+++
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk-~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L 312 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRK-NPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEAL 312 (375)
T ss_pred hhhcceeEEecccCCCccccc-CchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHH
Confidence 256999999998766533221 1111111 32221 11224568899999999999999999987653 33556666
Q ss_pred HHcC
Q 025211 187 MEKG 190 (256)
Q Consensus 187 ~~~g 190 (256)
+..+
T Consensus 313 ~~~~ 316 (375)
T KOG2198|consen 313 QKVG 316 (375)
T ss_pred HHhc
Confidence 6654
No 241
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.28 E-value=1.9e-05 Score=66.81 Aligned_cols=141 Identities=17% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHhhc-ccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchh
Q 025211 28 VDALLADRI-NLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIA 105 (256)
Q Consensus 28 ~~~l~~~~~-~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~ 105 (256)
+..++.++. .++...+.+|||+|||+|..+.++...... -..++++|.|+.|++.++..+....... .....+..
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~---~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~ 94 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPS---LKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLY 94 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcC---ceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhh
Confidence 344555553 234457889999999999987777666431 2379999999999999888665332111 11111111
Q ss_pred hchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH----HH
Q 025211 106 SGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP----SQ 181 (256)
Q Consensus 106 ~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~ 181 (256)
....+. ...|+|++.......++ .....+++.+.+.+++ .+++++++.... .+
T Consensus 95 ~~~~~~--~~~DLvi~s~~L~EL~~-------------------~~r~~lv~~LW~~~~~--~LVlVEpGt~~Gf~~i~~ 151 (274)
T PF09243_consen 95 RDFLPF--PPDDLVIASYVLNELPS-------------------AARAELVRSLWNKTAP--VLVLVEPGTPAGFRRIAE 151 (274)
T ss_pred cccccC--CCCcEEEEehhhhcCCc-------------------hHHHHHHHHHHHhccC--cEEEEcCCChHHHHHHHH
Confidence 111111 23499999655443332 1256788888877766 888888765433 35
Q ss_pred HHHHHHHcCCcEE
Q 025211 182 ICLQMMEKGYAAR 194 (256)
Q Consensus 182 ~~~~~~~~g~~~~ 194 (256)
+++.+.+.|+.+.
T Consensus 152 aR~~l~~~~~~v~ 164 (274)
T PF09243_consen 152 ARDQLLEKGAHVV 164 (274)
T ss_pred HHHHHhhCCCceE
Confidence 5666666666543
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.24 E-value=4.5e-06 Score=63.42 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=48.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhh
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIAS 106 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~ 106 (256)
.|+|+|||.|.+++.++.. +++++++++|.++.+++.+++++..++... .+++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~----~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK----GAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHh----CCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 4899999999998888776 677799999999999999999999988754 666655544
No 243
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.23 E-value=4.2e-05 Score=64.07 Aligned_cols=144 Identities=13% Similarity=0.137 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC---
Q 025211 24 SFALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--- 95 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--- 95 (256)
++.+.+.|++.+..+. .....+||-+|||.|.++.+++.. +..+.|.|.|--|+=...- -.|+.
T Consensus 33 R~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~------G~~~~gnE~S~~Mll~s~f--iLn~~~~~ 104 (270)
T PF07942_consen 33 RDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL------GYAVQGNEFSYFMLLASNF--ILNHCSQP 104 (270)
T ss_pred HHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc------cceEEEEEchHHHHHHHHH--HHcccCCC
Confidence 4556666666665442 245689999999999998888876 5689999999988543222 11110
Q ss_pred ---------------------------c-------------ceEEEcchhhchhhh-cCCCccEEEECCCCCCCCCcccc
Q 025211 96 ---------------------------H-------------ADLINTDIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVG 134 (256)
Q Consensus 96 ---------------------------~-------------~~~~~~d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~ 134 (256)
+ ..+..||+.+.-.+. ..++||+|++. |+...
T Consensus 105 ~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDT----- 177 (270)
T PF07942_consen 105 NQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDT----- 177 (270)
T ss_pred CcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeec-----
Confidence 0 034444544443221 12568877775 33221
Q ss_pred cccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC-----------CHHHHHHHHHHcCCcEEEE
Q 025211 135 REGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN-----------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~-----------~~~~~~~~~~~~g~~~~~~ 196 (256)
...+-.+++.+.++|||||.-+=+-| ... ..+++...+...||+....
T Consensus 178 --------------A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~~ 240 (270)
T PF07942_consen 178 --------------AENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMSIPNEMSVELSLEEIKELIEKLGFEIEKE 240 (270)
T ss_pred --------------hHHHHHHHHHHHHHhccCCEEEecCCccccCCCCCCCCCcccCCCHHHHHHHHHHCCCEEEEE
Confidence 12367889999999999996543221 111 2468999999999987543
No 244
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.22 E-value=1.4e-05 Score=60.85 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=58.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--Ccc--eEEEcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
.+..+|+|+|||.|.++..++..+....++..|+|+|.++..++.+.+.....+ +.. .+..+++.+... ....
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 100 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS---SDPP 100 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc---cCCC
Confidence 578999999999999999999866554578899999999999999999887766 322 444444433311 3456
Q ss_pred cEEEE
Q 025211 117 DVMVV 121 (256)
Q Consensus 117 D~Ii~ 121 (256)
++++.
T Consensus 101 ~~~vg 105 (141)
T PF13679_consen 101 DILVG 105 (141)
T ss_pred eEEEE
Confidence 77766
No 245
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=5.1e-05 Score=60.73 Aligned_cols=127 Identities=17% Similarity=0.131 Sum_probs=82.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch-----hhh-cCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL-----EKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~-----~~~-~~~ 114 (256)
.++..|+|+|+..|.++..+++.++ ++..|+|+|+.|-..-. ...++++|+.... ... ...
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~---~~~~ivavDi~p~~~~~----------~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLG---AGGKIVAVDILPMKPIP----------GVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhC---CCCcEEEEECcccccCC----------CceEEeeeccCccHHHHHHHHcCCC
Confidence 5789999999999999998888765 34469999998743211 1266777765442 222 234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
.+|+|++++.= +..... . .+...........++.+..+|++||.+++-.......+++...+.++.
T Consensus 111 ~~DvV~sD~ap-~~~g~~----~-----~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F 176 (205)
T COG0293 111 PVDVVLSDMAP-NTSGNR----S-----VDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLF 176 (205)
T ss_pred CcceEEecCCC-CcCCCc----c-----ccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhh
Confidence 47999997531 111100 0 011112223455677788899999999997777777788888887653
No 246
>PRK13699 putative methylase; Provisional
Probab=98.22 E-value=1.3e-05 Score=66.03 Aligned_cols=95 Identities=15% Similarity=0.246 Sum_probs=64.0
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+++++|..+.+....++++|+|+++|||...-..... . . ..+....+....++.++.++|||||.+++.. +..
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~-~----~-~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~-~~~ 75 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQG-R----T-IAGDKTDEWLQPACNEMYRVLKKDALMVSFY-GWN 75 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCC-c----c-cccccHHHHHHHHHHHHHHHcCCCCEEEEEe-ccc
Confidence 6789999998888888999999999999742110000 0 0 0111122446788999999999999888643 344
Q ss_pred CHHHHHHHHHHcCCcEE--EEEec
Q 025211 178 DPSQICLQMMEKGYAAR--IVVQR 199 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~--~~~~~ 199 (256)
....+...+.+.||... .++.+
T Consensus 76 ~~~~~~~al~~~GF~l~~~IiW~K 99 (227)
T PRK13699 76 RVDRFMAAWKNAGFSVVGHLVFTK 99 (227)
T ss_pred cHHHHHHHHHHCCCEEeeEEEEEC
Confidence 45566778888898753 35544
No 247
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.21 E-value=3e-06 Score=75.64 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=75.2
Q ss_pred ccCCccccCCchHHHHHHHHHhhccc-ccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025211 13 SHPEVYEPCDDSFALVDALLADRINL-VEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 13 ~~~~~~~p~~~~~~l~~~l~~~~~~~-~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+..+--..-......++.|.+.++.+ ..+.-..+||+|||+|.++..+... .|+.+-+.+.-...++..+.
T Consensus 87 FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--------~V~t~s~a~~d~~~~qvqfa 158 (506)
T PF03141_consen 87 FPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--------NVTTMSFAPNDEHEAQVQFA 158 (506)
T ss_pred eCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--------CceEEEcccccCCchhhhhh
Confidence 44443333344566777776666432 2234478999999999997554443 34444333332222222222
Q ss_pred -HcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 92 -AHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 92 -~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+.|++. +.+-+.....+++...||+|-|.-.... |... -.-+|-++.++|+|||.++
T Consensus 159 leRGvpa--~~~~~~s~rLPfp~~~fDmvHcsrc~i~--------------W~~~------~g~~l~evdRvLRpGGyfv 216 (506)
T PF03141_consen 159 LERGVPA--MIGVLGSQRLPFPSNAFDMVHCSRCLIP--------------WHPN------DGFLLFEVDRVLRPGGYFV 216 (506)
T ss_pred hhcCcch--hhhhhccccccCCccchhhhhccccccc--------------chhc------ccceeehhhhhhccCceEE
Confidence 245543 2222222334667889999988322111 1111 0235778899999999999
Q ss_pred EEEeCCC
Q 025211 171 LVTLTAN 177 (256)
Q Consensus 171 ~~~~~~~ 177 (256)
++.+...
T Consensus 217 ~S~ppv~ 223 (506)
T PF03141_consen 217 LSGPPVY 223 (506)
T ss_pred ecCCccc
Confidence 9776543
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.20 E-value=2e-05 Score=65.53 Aligned_cols=166 Identities=12% Similarity=0.117 Sum_probs=92.9
Q ss_pred HHHHHHHHhhcccc---cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH----------
Q 025211 26 ALVDALLADRINLV---EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---------- 92 (256)
Q Consensus 26 ~l~~~l~~~~~~~~---~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---------- 92 (256)
.++.+.+..+-... ..++.++||+|||.-...+ ..+ .++.+ .|+..|..+...+..++-+..
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~--lsa--~~~f~-~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~ 111 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQL--LSA--CEWFE-EIVLSDYSEQNREELEKWLRKEGAFDWSPFW 111 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGG--TTG--GGTEE-EEEEEESSHHHHHHHHHHHTT-TS--THHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhh--hhH--HHhhc-ceEEeeccHhhHHHHHHHHCCCCCCCccHHH
Confidence 45555555443222 2467899999999865311 111 11222 699999999988766553321
Q ss_pred ------cCC-----------c--c-eEEEcchhhchhhh----cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCc
Q 025211 93 ------HNV-----------H--A-DLINTDIASGLEKR----LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENG 148 (256)
Q Consensus 93 ------~~~-----------~--~-~~~~~d~~~~~~~~----~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
-|- . . .++..|+.+..+-. .+.+||+|++.... ......
T Consensus 112 ~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcL-----------------E~a~~d 174 (256)
T PF01234_consen 112 KYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCL-----------------ESACKD 174 (256)
T ss_dssp HHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSH-----------------HHH-SS
T ss_pred HHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHH-----------------HHHcCC
Confidence 110 0 1 56677776653211 12358988874221 111123
Q ss_pred HHHHHHHHHHHhhccccCeEEEEEEeCCC---------------CHHHHHHHHHHcCCcEEEEEe--cCCCCccEEEEEE
Q 025211 149 RAVIDKILPSADKLLSKRGWLYLVTLTAN---------------DPSQICLQMMEKGYAARIVVQ--RSTEEENLHIIKF 211 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---------------~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~l~~~ 211 (256)
.+.+...++.+.++|||||.++++..-.. ..+.+.+.+++.||.+..... .....+.++++.+
T Consensus 175 ~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a 254 (256)
T PF01234_consen 175 LDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVA 254 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEE
Confidence 45688999999999999999998653211 356899999999998776664 2223344555554
Q ss_pred Ee
Q 025211 212 WR 213 (256)
Q Consensus 212 ~~ 213 (256)
+|
T Consensus 255 ~K 256 (256)
T PF01234_consen 255 RK 256 (256)
T ss_dssp EE
T ss_pred eC
Confidence 43
No 249
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=0.00036 Score=55.32 Aligned_cols=174 Identities=18% Similarity=0.221 Sum_probs=111.7
Q ss_pred eeeeccCCccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHH
Q 025211 9 RLVSSHPEVYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTR 87 (256)
Q Consensus 9 ~~~~~~~~~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~ 87 (256)
+.+......|+-+.. ...|+..++.=+..++-+++.+||=+|..+|+-.-.++..+ +...++|+|.++......-
T Consensus 42 ~ii~~~~~eYR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv----~~G~iYaVEfs~R~~reLl 117 (231)
T COG1889 42 RIIKVEGEEYREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIV----GEGRIYAVEFSPRPMRELL 117 (231)
T ss_pred eeEEecCcceeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhcc----CCCcEEEEEecchhHHHHH
Confidence 333444445666655 78899999888887777899999999999999766666663 3568999999999877655
Q ss_pred HHHHHcCCcceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC
Q 025211 88 KTLEAHNVHADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR 166 (256)
Q Consensus 88 ~~~~~~~~~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 166 (256)
...... -+.-.+.+|+..+.. ...=+.+|+|+.+-..- + -.+-+..++...||+|
T Consensus 118 ~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~DVAQp--------------------~---Qa~I~~~Na~~FLk~~ 173 (231)
T COG1889 118 DVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQDVAQP--------------------N---QAEILADNAEFFLKKG 173 (231)
T ss_pred HHHHhC-CCceeeecccCCcHHhhhhcccccEEEEecCCc--------------------h---HHHHHHHHHHHhcccC
Confidence 444321 122566777765532 12235699999863210 0 1334567788899999
Q ss_pred eEEEEEEeCCC-----CHH----HHHHHHHHcCCcEEEE-EecCCCCccEEEEE
Q 025211 167 GWLYLVTLTAN-----DPS----QICLQMMEKGYAARIV-VQRSTEEENLHIIK 210 (256)
Q Consensus 167 G~l~~~~~~~~-----~~~----~~~~~~~~~g~~~~~~-~~~~~~~~~~~l~~ 210 (256)
|.++++....+ .++ +....+++.+|+...+ .......++..++.
T Consensus 174 G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~ 227 (231)
T COG1889 174 GYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEVVDLEPYEKDHALIVA 227 (231)
T ss_pred CeEEEEEEeecccccCCHHHHHHHHHHHHHhcCceeeEEeccCCcccceEEEEE
Confidence 98777553221 222 2344566677876543 33444455555443
No 250
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.18 E-value=2.2e-05 Score=63.48 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=68.4
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHH---
Q 025211 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEA--- 92 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~--- 92 (256)
+|-.. ....+..+++.+. -.++...+|+|||.|...+.++... ++ ..+|||+.+...+.|+.....
T Consensus 22 ~YGEi--~~~~~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~-----~~~~~~GIEi~~~~~~~a~~~~~~~~~ 91 (205)
T PF08123_consen 22 TYGEI--SPEFVSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQT-----GCKKSVGIEILPELHDLAEELLEELKK 91 (205)
T ss_dssp CGGGC--HHHHHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH-------SEEEEEE-SHHHHHHHHHHHHHHHH
T ss_pred ceeec--CHHHHHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHc-----CCcEEEEEEechHHHHHHHHHHHHHHH
Confidence 44443 2334444555543 3578999999999999988877663 23 499999999998888764432
Q ss_pred ----cCCc---ceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 93 ----HNVH---ADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 93 ----~~~~---~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.+.. .++.++|+.+... ...-...|+|++|---+ +.+ +..-|......||
T Consensus 92 ~~~~~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F---------------------~~~-l~~~L~~~~~~lk 149 (205)
T PF08123_consen 92 RMKHYGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF---------------------DPD-LNLALAELLLELK 149 (205)
T ss_dssp HHHHCTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT----------------------HH-HHHHHHHHHTTS-
T ss_pred HHHHhhcccccceeeccCccccHhHhhhhcCCCEEEEecccc---------------------CHH-HHHHHHHHHhcCC
Confidence 3332 2778888876421 11114579999973211 011 3333455566788
Q ss_pred cCeEEEE
Q 025211 165 KRGWLYL 171 (256)
Q Consensus 165 pgG~l~~ 171 (256)
+|-+++.
T Consensus 150 ~G~~IIs 156 (205)
T PF08123_consen 150 PGARIIS 156 (205)
T ss_dssp TT-EEEE
T ss_pred CCCEEEE
Confidence 8888764
No 251
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.16 E-value=2.5e-06 Score=68.61 Aligned_cols=110 Identities=15% Similarity=0.118 Sum_probs=74.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+....++|+|||-|.+. ..+..++-+ +++-+|.|..|++.++..- .+++......+|-... ++.+.++|+||
T Consensus 71 k~fp~a~diGcs~G~v~----rhl~~e~ve-kli~~DtS~~M~~s~~~~q-dp~i~~~~~v~DEE~L--df~ens~DLii 142 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVK----RHLRGEGVE-KLIMMDTSYDMIKSCRDAQ-DPSIETSYFVGDEEFL--DFKENSVDLII 142 (325)
T ss_pred hhCcceeecccchhhhh----HHHHhcchh-heeeeecchHHHHHhhccC-CCceEEEEEecchhcc--cccccchhhhh
Confidence 56689999999999964 443333333 7999999999999887632 2333335555664332 35678999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
+..-.+..++ +...+.+|+..|||+|.++-...+....
T Consensus 143 sSlslHW~Nd---------------------LPg~m~~ck~~lKPDg~FiasmlggdTL 180 (325)
T KOG2940|consen 143 SSLSLHWTND---------------------LPGSMIQCKLALKPDGLFIASMLGGDTL 180 (325)
T ss_pred hhhhhhhhcc---------------------CchHHHHHHHhcCCCccchhHHhccccH
Confidence 8654332222 4566788899999999988765544433
No 252
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.98 E-value=0.00037 Score=59.06 Aligned_cols=150 Identities=19% Similarity=0.163 Sum_probs=89.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+|+|+.||.|.+...+... +.+ .+.++|+++.+++..+.|... .++.+|+.+.........+|+++..||
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~----G~~-~v~a~e~~~~a~~~~~~N~~~-----~~~~~Di~~~~~~~~~~~~D~l~~gpP 71 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA----GFE-IVAANEIDKSAAETYEANFPN-----KLIEGDITKIDEKDFIPDIDLLTGGFP 71 (275)
T ss_pred cEEEEccCcchHHHHHHHc----CCE-EEEEEeCCHHHHHHHHHhCCC-----CCccCccccCchhhcCCCCCEEEeCCC
Confidence 6999999999987666554 222 589999999999988887632 356667766543211357999999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------CHHHHHHHHHHcCCcEEEE
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------DPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------~~~~~~~~~~~~g~~~~~~ 196 (256)
....+....... ..+..+ ..+..+++ +.+.++|. +++++.... ....+.+.+++.||.....
T Consensus 72 Cq~fS~ag~~~~------~~d~r~-~L~~~~~~-~i~~~~P~--~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~ 141 (275)
T cd00315 72 CQPFSIAGKRKG------FEDTRG-TLFFEIIR-ILKEKKPK--YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWK 141 (275)
T ss_pred ChhhhHHhhcCC------CCCchH-HHHHHHHH-HHHhcCCC--EEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEE
Confidence 876655321100 011111 12334443 33345676 333233221 2346777788889876443
Q ss_pred Ee------cCCCCccEEEEEEEec
Q 025211 197 VQ------RSTEEENLHIIKFWRD 214 (256)
Q Consensus 197 ~~------~~~~~~~~~l~~~~~~ 214 (256)
.. ..+..++++++..+++
T Consensus 142 ~l~a~~~GvPQ~R~R~~~ia~~~~ 165 (275)
T cd00315 142 LLNASDYGVPQNRERVFIIGIRKD 165 (275)
T ss_pred EEEHHHcCCCCCCcEEEEEEEeCC
Confidence 32 2345677777766654
No 253
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0003 Score=57.28 Aligned_cols=146 Identities=16% Similarity=0.164 Sum_probs=92.9
Q ss_pred CCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC
Q 025211 15 PEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN 94 (256)
Q Consensus 15 ~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~ 94 (256)
...|.+|- .+=...+++.+.- ..+++.|||+|+.||.|+-.+.+. + ...|+|+|..-..+.- .+. +.
T Consensus 56 ~~~yVSRG--~~KL~~ale~F~l--~~k~kv~LDiGsSTGGFTd~lLq~----g-Ak~VyavDVG~~Ql~~---kLR-~d 122 (245)
T COG1189 56 EQPYVSRG--GLKLEKALEEFEL--DVKGKVVLDIGSSTGGFTDVLLQR----G-AKHVYAVDVGYGQLHW---KLR-ND 122 (245)
T ss_pred CcCccccH--HHHHHHHHHhcCc--CCCCCEEEEecCCCccHHHHHHHc----C-CcEEEEEEccCCccCH---hHh-cC
Confidence 34555552 3333455665542 358899999999999999888775 2 2489999987654432 111 11
Q ss_pred Ccc-eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 95 VHA-DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 95 ~~~-~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
... .+...|+....++...+..|+++|+--|. .+..++..+..+++++|.++...
T Consensus 123 ~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSFI------------------------SL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 123 PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSFI------------------------SLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred CcEEEEecCChhhCCHHHcccCCCeEEEEeehh------------------------hHHHHHHHHHHhcCCCceEEEEe
Confidence 122 44455665555544456889999975553 26788999999999998877644
Q ss_pred e-CCC--------------------CHHHHHHHHHHcCCcEEEEE
Q 025211 174 L-TAN--------------------DPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 174 ~-~~~--------------------~~~~~~~~~~~~g~~~~~~~ 197 (256)
. .+. ....+.+++.+.||....+.
T Consensus 179 KPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 179 KPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred cchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeeeE
Confidence 2 211 11356666777788775544
No 254
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=5.3e-05 Score=59.23 Aligned_cols=135 Identities=13% Similarity=0.053 Sum_probs=81.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEc-chhhchh------hhc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINT-DIASGLE------KRL 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~-d~~~~~~------~~~ 112 (256)
.|+.+|||+||..|.++.-+.+.. +|+..|.|||+-.-. .... .++.+ |+.+... ...
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~---~p~g~v~gVDllh~~-----------p~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRV---NPNGMVLGVDLLHIE-----------PPEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhh---CCCceEEEEeeeecc-----------CCCCcccccccccCCHHHHHHHHHhCC
Confidence 578999999999999987666654 488899999985421 1111 33333 4443321 112
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
.-.+|+|+++..-..+... .. ++....+.-..++......++|+|.++.-.........+.+.|.+..-.
T Consensus 134 ~r~VdvVlSDMapnaTGvr-~~---------Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~ 203 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVR-IR---------DHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTN 203 (232)
T ss_pred CCcccEEEeccCCCCcCcc-hh---------hHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhh
Confidence 3568999997642211110 00 0000112233445556778899999998777777777788888765434
Q ss_pred EEEEEec
Q 025211 193 ARIVVQR 199 (256)
Q Consensus 193 ~~~~~~~ 199 (256)
+..+.+.
T Consensus 204 Vk~vKP~ 210 (232)
T KOG4589|consen 204 VKKVKPD 210 (232)
T ss_pred cEeeCCc
Confidence 4445544
No 255
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.95 E-value=0.00012 Score=64.55 Aligned_cols=131 Identities=24% Similarity=0.260 Sum_probs=83.5
Q ss_pred cCCccccCCc-hHHHHHHHHHhhccccc--CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH
Q 025211 14 HPEVYEPCDD-SFALVDALLADRINLVE--HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL 90 (256)
Q Consensus 14 ~~~~~~p~~~-~~~l~~~l~~~~~~~~~--~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~ 90 (256)
.+-+|-|... .+-+.-.++..+..... ..+.+|||.-+|+|.=++-.++.+. ....|++-|+|+++++.+++|+
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~---~~~~v~~NDi~~~a~~~i~~N~ 94 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELA---GVDKVTANDISPEAVELIKRNL 94 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-S---SECEEEEEES-HHHHHHHHHHH
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcC---CCCEEEEecCCHHHHHHHHHhH
Confidence 4558888766 22222222111111111 2457999999999998777777643 1247999999999999999999
Q ss_pred HHcCCcc---eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCe
Q 025211 91 EAHNVHA---DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRG 167 (256)
Q Consensus 91 ~~~~~~~---~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG 167 (256)
..|++.. ++.+.|+...+. .....||+|=.+| |.. ...+++.+.+.++.||
T Consensus 95 ~~N~~~~~~~~v~~~DAn~ll~-~~~~~fD~IDlDP-fGS------------------------p~pfldsA~~~v~~gG 148 (377)
T PF02005_consen 95 ELNGLEDERIEVSNMDANVLLY-SRQERFDVIDLDP-FGS------------------------PAPFLDSALQAVKDGG 148 (377)
T ss_dssp HHCT-SGCCEEEEES-HHHHHC-HSTT-EEEEEE---SS--------------------------HHHHHHHHHHEEEEE
T ss_pred hhccccCceEEEehhhHHHHhh-hccccCCEEEeCC-CCC------------------------ccHhHHHHHHHhhcCC
Confidence 9999876 677889887763 2357899998764 321 3577888889999999
Q ss_pred EEEEEE
Q 025211 168 WLYLVT 173 (256)
Q Consensus 168 ~l~~~~ 173 (256)
.+.+..
T Consensus 149 ll~vTa 154 (377)
T PF02005_consen 149 LLCVTA 154 (377)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999954
No 256
>PRK11524 putative methyltransferase; Provisional
Probab=97.94 E-value=3.6e-05 Score=65.55 Aligned_cols=89 Identities=18% Similarity=0.252 Sum_probs=56.2
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.++++|..+.+....+++||+|++||||......... ...+. ...-...+..++..+.++|||||.+++... ..
T Consensus 10 ~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~----~~~~~-~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~-~~ 83 (284)
T PRK11524 10 TIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGL----IEAWK-EDLFIDWLYEWIDECHRVLKKQGTMYIMNS-TE 83 (284)
T ss_pred EEEeccHHHHHHhcccCcccEEEECCCcccccccccc----ccccc-HHHHHHHHHHHHHHHHHHhCCCcEEEEEcC-ch
Confidence 7899999998766667899999999999742110000 00000 011123457889999999999999998643 32
Q ss_pred CHHHHHHHHHHcCCcE
Q 025211 178 DPSQICLQMMEKGYAA 193 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~ 193 (256)
.... ...+.+.+|..
T Consensus 84 ~~~~-~~~~~~~~f~~ 98 (284)
T PRK11524 84 NMPF-IDLYCRKLFTI 98 (284)
T ss_pred hhhH-HHHHHhcCcce
Confidence 2222 34455566643
No 257
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.93 E-value=0.00013 Score=58.39 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=75.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-++.+||++|-|-|.+. ..++++.|. .-+-+|-+|..++.+++..-...-+..+..+...+.+....++.||-|+
T Consensus 100 tkggrvLnVGFGMgIid----T~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~ 174 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIID----TFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIY 174 (271)
T ss_pred hCCceEEEeccchHHHH----HHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeE
Confidence 47899999999999953 444444554 7788899999999887653222222267778888888777788999998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
-+- |.. .-+....+.+.+.++|||+|++-+
T Consensus 175 yDT-y~e--------------------~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 175 YDT-YSE--------------------LYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred eec-hhh--------------------HHHHHHHHHHHHhhhcCCCceEEE
Confidence 741 100 012355677788999999999887
No 258
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.93 E-value=0.00044 Score=59.62 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=89.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcC-----Ccc---eEEEcchhhchhhhc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHN-----VHA---DLINTDIASGLEKRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~-----~~~---~~~~~d~~~~~~~~~ 112 (256)
.-.+||-+|-|.|.-+.++.+ +|+ .+|+-+|++|+|++.++.+..... ..+ +++..|+.+++..-
T Consensus 289 ~a~~vLvlGGGDGLAlRellk-----yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a- 362 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLK-----YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA- 362 (508)
T ss_pred ccceEEEEcCCchHHHHHHHh-----CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh-
Confidence 458999999999996555444 563 579999999999999996543321 222 78899999987653
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC-CCCH---HHHHHHHHH
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT-ANDP---SQICLQMME 188 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-~~~~---~~~~~~~~~ 188 (256)
...||.||.+.|=-..+.. +.-....+-.-+.+.|+++|.+++-..+ +..+ -.+.+-+++
T Consensus 363 ~~~fD~vIVDl~DP~tps~----------------~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 363 ADMFDVVIVDLPDPSTPSI----------------GRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred cccccEEEEeCCCCCCcch----------------hhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHh
Confidence 4689999998763222221 1122456667788899999999873321 1112 245677788
Q ss_pred cCCcEE
Q 025211 189 KGYAAR 194 (256)
Q Consensus 189 ~g~~~~ 194 (256)
.|+...
T Consensus 427 AG~~~~ 432 (508)
T COG4262 427 AGYRVW 432 (508)
T ss_pred Ccceee
Confidence 887653
No 259
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.91 E-value=4.6e-05 Score=62.62 Aligned_cols=73 Identities=27% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|+|+|||.--+++..... .+++.++|+||+..+++....-+...+++.++...|+....++ ...|+.+.
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~----~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~---~~~DlaLl 177 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPE----APGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPK---EPADLALL 177 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTS----STT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTT---SEESEEEE
T ss_pred CCchhhhhhccCCceehhhccc----CCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCC---CCcchhhH
Confidence 5899999999998876443322 5678999999999999999999998898888888888776443 67899988
No 260
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.89 E-value=7.2e-05 Score=64.15 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=72.6
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEEC
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVN 122 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~n 122 (256)
....+|+|.|.|.++-.+.. ++|+ |-+++.+...+-.+..++. .| .+.+.+|.++..| +-|+|++-
T Consensus 178 v~~avDvGgGiG~v~k~ll~----~fp~--ik~infdlp~v~~~a~~~~-~g--V~~v~gdmfq~~P-----~~daI~mk 243 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLS----KYPH--IKGINFDLPFVLAAAPYLA-PG--VEHVAGDMFQDTP-----KGDAIWMK 243 (342)
T ss_pred CceEEEcCCcHhHHHHHHHH----hCCC--CceeecCHHHHHhhhhhhc-CC--cceecccccccCC-----CcCeEEEE
Confidence 48999999999998655444 3774 7788888777777666664 44 4667788777633 34699985
Q ss_pred CCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 123 PPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 123 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-..++.++. ...++|++|++.|+|||.++++..
T Consensus 244 WiLhdwtDe-------------------dcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 244 WILHDWTDE-------------------DCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred eecccCChH-------------------HHHHHHHHHHHhCCCCCEEEEEec
Confidence 444443332 367999999999999999999775
No 261
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.00019 Score=64.13 Aligned_cols=152 Identities=14% Similarity=0.075 Sum_probs=94.2
Q ss_pred cccceeeeccCCccccCC-c-hHHHHHHHHHhhcc-cccCCCC-EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH
Q 025211 5 TAQIRLVSSHPEVYEPCD-D-SFALVDALLADRIN-LVEHHPV-LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP 80 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~p~~-~-~~~l~~~l~~~~~~-~~~~~~~-~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~ 80 (256)
...+.....-...|.||- + .+.+.+++.-.-.. ....+-. +++.+|||+..+...+.+. .--.|+.+|+|+
T Consensus 7 ~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~-----G~~dI~~iD~S~ 81 (482)
T KOG2352|consen 7 QLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKN-----GFEDITNIDSSS 81 (482)
T ss_pred ccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhc-----CCCCceeccccH
Confidence 344455555567888884 3 55555553221100 0113445 9999999999876555443 223799999999
Q ss_pred HHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHh
Q 025211 81 YAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSAD 160 (256)
Q Consensus 81 ~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (256)
..++.+...-........+...|+... .+.+++||+|+.-+-....-.++.. .+.. ......+.+++
T Consensus 82 V~V~~m~~~~~~~~~~~~~~~~d~~~l--~fedESFdiVIdkGtlDal~~de~a------~~~~-----~~v~~~~~eVs 148 (482)
T KOG2352|consen 82 VVVAAMQVRNAKERPEMQMVEMDMDQL--VFEDESFDIVIDKGTLDALFEDEDA------LLNT-----AHVSNMLDEVS 148 (482)
T ss_pred HHHHHHHhccccCCcceEEEEecchhc--cCCCcceeEEEecCccccccCCchh------hhhh-----HHhhHHHhhHH
Confidence 999887654322112227788887665 4557899999985544332222211 0000 13567789999
Q ss_pred hccccCeEEEEEEe
Q 025211 161 KLLSKRGWLYLVTL 174 (256)
Q Consensus 161 ~~LkpgG~l~~~~~ 174 (256)
++|++||+.+.++.
T Consensus 149 rvl~~~gk~~svtl 162 (482)
T KOG2352|consen 149 RVLAPGGKYISVTL 162 (482)
T ss_pred HHhccCCEEEEEEe
Confidence 99999999887765
No 262
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00022 Score=61.58 Aligned_cols=101 Identities=22% Similarity=0.310 Sum_probs=78.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-CCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-NVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..+|+|.-+|||.=+|-++... +...++.-|+||++++.+++|+..| +.+..+++.|+...+... ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~----~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~-~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVET----GVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHEL-HRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhc----CccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhc-CCCccEEec
Confidence 7999999999999877777663 3348999999999999999999999 455577778888776552 368999866
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+| |.. ..-+++.+.+.++.||.+.+..
T Consensus 128 DP-FGS------------------------PaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DP-FGS------------------------PAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CC-CCC------------------------CchHHHHHHHHhhcCCEEEEEe
Confidence 54 431 2356777777888899999854
No 263
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.83 E-value=0.00023 Score=60.82 Aligned_cols=91 Identities=19% Similarity=0.218 Sum_probs=67.7
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchh
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIA 105 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~ 105 (256)
.|.+.+++.+. ..++..++|.=+|.|.-+..+++.+ +++.|+|+|.++.+++.+++++...+-...++++++.
T Consensus 7 Vll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l----~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~ 79 (305)
T TIGR00006 7 VLLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQL----GTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFA 79 (305)
T ss_pred hhHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhC----CCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHH
Confidence 34455555553 2577899999999999998888764 3479999999999999999988755434488888887
Q ss_pred hchhhh---cCCCccEEEECC
Q 025211 106 SGLEKR---LAGLVDVMVVNP 123 (256)
Q Consensus 106 ~~~~~~---~~~~fD~Ii~np 123 (256)
+..... ...++|.|+.|.
T Consensus 80 ~l~~~l~~~~~~~vDgIl~DL 100 (305)
T TIGR00006 80 NFFEHLDELLVTKIDGILVDL 100 (305)
T ss_pred HHHHHHHhcCCCcccEEEEec
Confidence 764322 235699999854
No 264
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=0.0012 Score=56.91 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=48.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.++||+||++|.++-.+.+. ++.|+|||..+-. . .+..+ -....+..|.....++ .+.+|.++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r------G~~V~AVD~g~l~-~----~L~~~-~~V~h~~~d~fr~~p~--~~~vDwvV 275 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR------GMFVTAVDNGPMA-Q----SLMDT-GQVEHLRADGFKFRPP--RKNVDWLV 275 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc------CCEEEEEechhcC-H----hhhCC-CCEEEEeccCcccCCC--CCCCCEEE
Confidence 57899999999999998777665 5699999965522 1 12111 1236666776666443 46899999
Q ss_pred ECCC
Q 025211 121 VNPP 124 (256)
Q Consensus 121 ~npP 124 (256)
|+..
T Consensus 276 cDmv 279 (357)
T PRK11760 276 CDMV 279 (357)
T ss_pred Eecc
Confidence 9753
No 265
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.77 E-value=0.00027 Score=58.59 Aligned_cols=124 Identities=19% Similarity=0.232 Sum_probs=89.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++.|+-+| -.-..+++++.- . -|+ .|..+||++..++...+.+++.|.++ +.+..|+.+++++....+||+++
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt--~-mpk-~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT--G-MPK-RIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc--C-CCc-eEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 567899888 444455444432 1 233 89999999999999999999999985 89999999998877778999999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC---eEEEEEEeCCCCH--HHHHH-HHHHcCCc
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR---GWLYLVTLTANDP--SQICL-QMMEKGYA 192 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg---G~l~~~~~~~~~~--~~~~~-~~~~~g~~ 192 (256)
.+||+- ...+..|+..-...||.- |++.+.....+.. .++++ .+.++|+-
T Consensus 227 TDPpeT----------------------i~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvV 282 (354)
T COG1568 227 TDPPET----------------------IKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVV 282 (354)
T ss_pred cCchhh----------------------HHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCee
Confidence 999973 223667788888888877 7777754322211 14455 44455554
No 266
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.72 E-value=0.00068 Score=57.07 Aligned_cols=106 Identities=22% Similarity=0.253 Sum_probs=61.0
Q ss_pred CCCEEEEecccccHHH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH-HcCCc--ceEEEcchhhchhhhcCCCcc
Q 025211 42 HPVLCMEVGCGSGYVI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE-AHNVH--ADLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~-~~~~~--~~~~~~d~~~~~~~~~~~~fD 117 (256)
.+.+|+=||||.=-++ +.+++. ..+++.|+++|+++++++.+++-+. ..++. ..++.+|..+...+ -..||
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~---~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d--l~~~D 194 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQ---HGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD--LKEYD 194 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH-----HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------S
T ss_pred ccceEEEEcCCCcchHHHHHHHH---hCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc--cccCC
Confidence 3469999999965433 333332 1457789999999999999998877 33443 38999998776433 26899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+|+.. ++.+... ....+++..+.+.++||..+++=
T Consensus 195 vV~lA------------------alVg~~~--e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 195 VVFLA------------------ALVGMDA--EPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp EEEE-------------------TT-S------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred EEEEh------------------hhccccc--chHHHHHHHHHhhCCCCcEEEEe
Confidence 99873 2222111 12578999999999999998873
No 267
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=97.66 E-value=0.0014 Score=56.56 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=88.8
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCC
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
+++|+.||.|.+.+.+.+. +.+ .+.++|+++.+.+.-+.|.. ....+|+.+......+..+|+++..||
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a----g~~-~~~a~e~~~~a~~~y~~N~~------~~~~~Di~~~~~~~l~~~~D~l~ggpP 70 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA----GFE-VVWAVEIDPDACETYKANFP------EVICGDITEIDPSDLPKDVDLLIGGPP 70 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT----TEE-EEEEEESSHHHHHHHHHHHT------EEEESHGGGCHHHHHHHT-SEEEEE--
T ss_pred cEEEEccCccHHHHHHHhc----CcE-EEEEeecCHHHHHhhhhccc------ccccccccccccccccccceEEEeccC
Confidence 6999999999988777665 222 69999999999999888875 777888887754322226999999998
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC------HHHHHHHHHHcCCcEEEEEe
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND------PSQICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~ 198 (256)
--..+..... .. ..+.++ .....+++-+ +.++|.-+++=..+.... ...+.+.+.+.||.+.....
T Consensus 71 CQ~fS~ag~~-----~~-~~d~r~-~L~~~~~~~v-~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~vl 142 (335)
T PF00145_consen 71 CQGFSIAGKR-----KG-FDDPRN-SLFFEFLRIV-KELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRVL 142 (335)
T ss_dssp -TTTSTTSTH-----HC-CCCHTT-SHHHHHHHHH-HHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CceEeccccc-----cc-cccccc-hhhHHHHHHH-hhccceEEEecccceeeccccccccccccccccccceeehhccc
Confidence 7665553210 00 111111 1233444444 456786544422222211 35677888888987654332
Q ss_pred ------cCCCCccEEEEEEEecC
Q 025211 199 ------RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 199 ------~~~~~~~~~l~~~~~~~ 215 (256)
..+...+++++..+++.
T Consensus 143 na~~yGvPQ~R~R~fivg~r~~~ 165 (335)
T PF00145_consen 143 NAADYGVPQNRERVFIVGIRKDL 165 (335)
T ss_dssp EGGGGTSSBE-EEEEEEEEEGGG
T ss_pred cHhhCCCCCceeeEEEEEECCCC
Confidence 12445677777766654
No 268
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.65 E-value=0.0011 Score=49.76 Aligned_cols=105 Identities=23% Similarity=0.352 Sum_probs=65.6
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhcC-CCccEEEECC
Q 025211 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRLA-GLVDVMVVNP 123 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~~-~~fD~Ii~np 123 (256)
++|+|||+|... .+... . .....++++|+++.++..++......... ..+...|......++.. ..||++....
T Consensus 52 ~ld~~~g~g~~~-~~~~~-~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 127 (257)
T COG0500 52 VLDIGCGTGRLA-LLARL-G--GRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLL 127 (257)
T ss_pred eEEecCCcCHHH-HHHHh-C--CCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeee
Confidence 999999999865 23332 1 11147999999999998855544332222 35666666552123223 4799994432
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
.+.... ....+..+.+.|+|+|.+++.....
T Consensus 128 ~~~~~~----------------------~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 128 VLHLLP----------------------PAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred ehhcCC----------------------HHHHHHHHHHhcCCCcEEEEEeccC
Confidence 211100 3677889999999999999866543
No 269
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.64 E-value=0.0019 Score=53.49 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=73.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-----CC--cceEEEcchhhchh-hhcCC
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-----NV--HADLINTDIASGLE-KRLAG 114 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-----~~--~~~~~~~d~~~~~~-~~~~~ 114 (256)
..+|||+|+|+|..++.++..+ ++++...|.-. .++..+.|...+ +. ...+...+...... .....
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~-----~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~ 160 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLL-----GAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLP 160 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHh-----cceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccC
Confidence 5679999999999998888863 46888888644 444444443332 22 22333333333221 11223
Q ss_pred C-ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC-HHHHHHHHHHcCCc
Q 025211 115 L-VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND-PSQICLQMMEKGYA 192 (256)
Q Consensus 115 ~-fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~g~~ 192 (256)
. +|+|++--+++.... ...++..+..+|..+|++++..+-.+. ..++...+.+..+.
T Consensus 161 ~~~DlilasDvvy~~~~---------------------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~~~~~~~ 219 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEES---------------------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLLFKKDLK 219 (248)
T ss_pred CcccEEEEeeeeecCCc---------------------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHHhhhhhc
Confidence 3 899998666554333 356777888888899977776653332 23455555554443
No 270
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.0065 Score=51.38 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=60.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh---cCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR---LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~fD 117 (256)
+++...+|.--|.|..+..+...+ .+.++++|+|.++.+++.|++.+...+-...+++.++.+..... .-+++|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l---~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vD 98 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKL---PDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVD 98 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhC---CCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence 678999999999999887777664 23567999999999999999998876655588888776654322 235677
Q ss_pred EEEE
Q 025211 118 VMVV 121 (256)
Q Consensus 118 ~Ii~ 121 (256)
-|+.
T Consensus 99 GiL~ 102 (314)
T COG0275 99 GILL 102 (314)
T ss_pred EEEE
Confidence 7777
No 271
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.56 E-value=0.0023 Score=49.99 Aligned_cols=138 Identities=21% Similarity=0.186 Sum_probs=80.4
Q ss_pred ecccccHHHHHHHHHhcccCCCceEEEEe--CCHHHHHH---HHHHHHHcCC-cc-eEEEcchhhchhhh--cCCCccEE
Q 025211 49 VGCGSGYVITSLALMLGQEVPGVQYIATD--INPYAVEV---TRKTLEAHNV-HA-DLINTDIASGLEKR--LAGLVDVM 119 (256)
Q Consensus 49 lGcG~G~~~~~l~~~l~~~~~~~~v~giD--~~~~~i~~---a~~~~~~~~~-~~-~~~~~d~~~~~~~~--~~~~fD~I 119 (256)
+|=|.-.++.++++.... ...++|+- ..++..+. +..|++...- .. -++..|+.+..... ....||.|
T Consensus 3 vGeGdfSFs~sL~~~~~~---~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrI 79 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGS---ATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRI 79 (166)
T ss_pred eeccchHHHHHHHHHcCC---CCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEE
Confidence 455555666666665432 44555554 44444433 3356554421 12 34455665554333 35789999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC--HHHHHHHHHHcCCcEEEEE
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND--PSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--~~~~~~~~~~~g~~~~~~~ 197 (256)
|.|.|+.-..... ..... ......+..++..+..+|+++|.+.+....... .-.+.+..++.|+......
T Consensus 80 iFNFPH~G~~~~~-~~~~i-------~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~~ 151 (166)
T PF10354_consen 80 IFNFPHVGGGSED-GKRNI-------RLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRKV 151 (166)
T ss_pred EEeCCCCCCCccc-hhHHH-------HHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEEe
Confidence 9999986411100 00000 012346789999999999999999997764432 2357777778888765544
No 272
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=97.50 E-value=0.0014 Score=62.55 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=87.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhc---ccCC-----CceEEEEeCCHH---HHHHH-----------HHHHHH-----c
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLG---QEVP-----GVQYIATDINPY---AVEVT-----------RKTLEA-----H 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~---~~~~-----~~~v~giD~~~~---~i~~a-----------~~~~~~-----~ 93 (256)
+..-+|+|+|-|+|...+.+.+... +..+ ..+++++|..|- .+..+ +..... .
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 4558999999999998887776652 1222 468999997552 22221 121111 1
Q ss_pred CC----------cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc
Q 025211 94 NV----------HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL 163 (256)
Q Consensus 94 ~~----------~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 163 (256)
++ ..++..+|+.+.+... ...||+++.++ |.+..+++ .....++..+.+++
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~-~~~~d~~~lD~-FsP~~np~-----------------~W~~~~~~~l~~~~ 196 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQL-DARADAWFLDG-FAPAKNPD-----------------MWSPNLFNALARLA 196 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhc-cccccEEEeCC-CCCccChh-----------------hccHHHHHHHHHHh
Confidence 21 1267788988876653 35799999974 22222221 12578999999999
Q ss_pred ccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEE
Q 025211 164 SKRGWLYLVTLTANDPSQICLQMMEKGYAARI 195 (256)
Q Consensus 164 kpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~ 195 (256)
+|||++.-. +....+++.+...||++..
T Consensus 197 ~~~~~~~t~----t~a~~vr~~l~~~GF~v~~ 224 (662)
T PRK01747 197 RPGATLATF----TSAGFVRRGLQEAGFTVRK 224 (662)
T ss_pred CCCCEEEEe----ehHHHHHHHHHHcCCeeee
Confidence 999999853 3567889999999998653
No 273
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.50 E-value=0.00037 Score=61.10 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+++|+|||.|....+++. +.++.++|+|+++..+..+........++. .++.+|+.+. ++.+..||.
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~-----f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~--~fedn~fd~ 181 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAV-----FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM--PFEDNTFDG 181 (364)
T ss_pred cccccccccCcCcCchhHHHHH-----hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC--CCCccccCc
Confidence 5677999999999998776665 356799999999988877766554444443 5677777665 455789999
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEE
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+.+.-.-.+. .....+++++.+.++|||..+..
T Consensus 182 v~~ld~~~~~---------------------~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 182 VRFLEVVCHA---------------------PDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEEEeecccC---------------------CcHHHHHHHHhcccCCCceEEeH
Confidence 9873211111 12578899999999999999873
No 274
>PRK11524 putative methyltransferase; Provisional
Probab=97.35 E-value=0.001 Score=56.71 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
...|++.++... +.+++.|||+.||+|+-++++.++ +-+.+|+|++++.++.|++++.
T Consensus 194 P~~L~erlI~~~----S~~GD~VLDPF~GSGTT~~AA~~l------gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 194 PEALLKRIILAS----SNPGDIVLDPFAGSFTTGAVAKAS------GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred hHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHH
Confidence 456666655544 478999999999999988766554 3379999999999999999985
No 275
>PRK13699 putative methylase; Provisional
Probab=97.31 E-value=0.0014 Score=53.93 Aligned_cols=64 Identities=17% Similarity=0.279 Sum_probs=48.7
Q ss_pred ccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH
Q 025211 19 EPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 19 ~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
.|..=...|++.++... ..++..|||+.||+|+.++++.+. +-..+|+|++++..+.+.+++..
T Consensus 144 hp~~kP~~l~~~~i~~~----s~~g~~vlDpf~Gsgtt~~aa~~~------~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 144 HPTEKPVTSLQPLIESF----THPNAIVLDPFAGSGSTCVAALQS------GRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCcHHHHHHHHHHh----CCCCCEEEeCCCCCCHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHH
Confidence 34444456666666544 368999999999999988776654 34799999999999999988764
No 276
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.30 E-value=9.2e-05 Score=58.83 Aligned_cols=95 Identities=17% Similarity=0.240 Sum_probs=60.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+.++||+|+|.|.++.-++-... .|++.|.|..|....++. +. +++ ...+.... +-++|+|.
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~fe------evyATElS~tMr~rL~kk----~y--nVl--~~~ew~~t--~~k~dli~ 174 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTFE------EVYATELSWTMRDRLKKK----NY--NVL--TEIEWLQT--DVKLDLIL 174 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchHH------HHHHHHhhHHHHHHHhhc----CC--cee--eehhhhhc--CceeehHH
Confidence 4568999999999998766555422 599999999998766553 11 221 11122111 23689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc-CeEEEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK-RGWLYLV 172 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp-gG~l~~~ 172 (256)
|-- ...+. ...-++++.++.+|+| +|++++.
T Consensus 175 clN--------------lLDRc-------~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 175 CLN--------------LLDRC-------FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred HHH--------------HHHhh-------cChHHHHHHHHHHhccCCCcEEEE
Confidence 810 00011 1135789999999999 8988763
No 277
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.30 E-value=0.0011 Score=53.96 Aligned_cols=59 Identities=20% Similarity=0.388 Sum_probs=40.9
Q ss_pred cCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 20 PCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 20 p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|..=...|++.++... ..++..|||+.||+|+.++++.++ +-+.+|+|++++.++.|++
T Consensus 173 ~~~kP~~l~~~lI~~~----t~~gdiVlDpF~GSGTT~~aa~~l------~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 173 PTQKPVELIERLIKAS----TNPGDIVLDPFAGSGTTAVAAEEL------GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp TT-S-HHHHHHHHHHH----S-TT-EEEETT-TTTHHHHHHHHT------T-EEEEEESSHHHHHHHHH
T ss_pred eecCCHHHHHHHHHhh----hccceeeehhhhccChHHHHHHHc------CCeEEEEeCCHHHHHHhcC
Confidence 3333456666666554 468999999999999988776654 3379999999999998864
No 278
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.00064 Score=61.16 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
...|+-+|.|-|-+.-+..+....-..+.+++++|.+|.++-..+. ....+++. +++..|+..+..+ .+..|+++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap--~eq~DI~V 444 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP--REQADIIV 444 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc--hhhccchH
Confidence 5678888999998765555543333457899999999999877654 33334443 8999999988644 36889998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+- +.|.....+...+.|..+.+.|||+|+.+=
T Consensus 445 SE-------------------LLGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 445 SE-------------------LLGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred HH-------------------hhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 72 222222223467889999999999998774
No 279
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.27 E-value=0.00027 Score=58.91 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=71.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+..++|+|||.|-.+ .. .|.+.+.|.|++...+..+++. +.+ .+..+|+... ++.+.+||.+++
T Consensus 45 ~gsv~~d~gCGngky~-------~~-~p~~~~ig~D~c~~l~~~ak~~----~~~-~~~~ad~l~~--p~~~~s~d~~ls 109 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL-------GV-NPLCLIIGCDLCTGLLGGAKRS----GGD-NVCRADALKL--PFREESFDAALS 109 (293)
T ss_pred CcceeeecccCCcccC-------cC-CCcceeeecchhhhhccccccC----CCc-eeehhhhhcC--CCCCCccccchh
Confidence 4789999999999842 11 4778899999999888877652 111 5777888776 334688999987
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
--..++.+. ......+++++.+.|+|||...+....
T Consensus 110 iavihhlsT------------------~~RR~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331|consen 110 IAVIHHLST------------------RERRERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred hhhhhhhhh------------------HHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence 433332222 223578899999999999997775543
No 280
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.19 E-value=0.0066 Score=52.83 Aligned_cols=153 Identities=18% Similarity=0.184 Sum_probs=94.5
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCC-CccEEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAG-LVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~fD~Ii~ 121 (256)
..+++|+.||.|.+.+.+... +.+ -+.++|+++.+++.-+.|... ..+...|+.+........ .+|+|+.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a----gf~-~~~a~Eid~~a~~ty~~n~~~----~~~~~~di~~~~~~~~~~~~~Dvlig 73 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA----GFE-IVFANEIDPPAVATYKANFPH----GDIILGDIKELDGEALRKSDVDVLIG 73 (328)
T ss_pred CceEEeeccCCchHHHHHHhc----CCe-EEEEEecCHHHHHHHHHhCCC----CceeechHhhcChhhccccCCCEEEe
Confidence 468999999999987666554 322 589999999999988877642 367777877665443333 7999999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------CCHHHHHHHHHHcCCcEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA-------NDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~~~~~~~~~~~~~g~~~~ 194 (256)
.||--..+..... ....++++. +-.-+.++...++| .+++++... ...+.+.+.|.+.||.+.
T Consensus 74 GpPCQ~FS~aG~r------~~~~D~R~~--L~~~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~ 143 (328)
T COG0270 74 GPPCQDFSIAGKR------RGYDDPRGS--LFLEFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGYGVE 143 (328)
T ss_pred CCCCcchhhcCcc------cCCcCccce--eeHHHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCCcch
Confidence 9998665543221 111222211 11123344456777 444434322 234678888889998632
Q ss_pred E-E-----EecCCCCccEEEEEEEec
Q 025211 195 I-V-----VQRSTEEENLHIIKFWRD 214 (256)
Q Consensus 195 ~-~-----~~~~~~~~~~~l~~~~~~ 214 (256)
. + +-..+..++++++-..++
T Consensus 144 ~~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 144 FNILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred HheeeHHhcCCCCCccEEEEEEecCc
Confidence 1 1 123456788888866653
No 281
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.16 E-value=0.0041 Score=49.99 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC--cceEEEcchhhchhhh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV--HADLINTDIASGLEKR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~--~~~~~~~d~~~~~~~~------~~ 113 (256)
+++.|+|+|.-.|.-++..|.++..-+++++|+|+|++..... ++.++.+.+ ..+++++|..+...-. ..
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~ 109 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASP 109 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS---
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhcc
Confidence 6899999999999988888887765557789999999654432 112222332 2389999876543210 12
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
....+|+.+--+.+ .-....|+....++++|+++++
T Consensus 110 ~~~vlVilDs~H~~----------------------~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 110 PHPVLVILDSSHTH----------------------EHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp -SSEEEEESS--------------------------SSHHHHHHHHHHT--TT-EEEE
T ss_pred CCceEEEECCCccH----------------------HHHHHHHHHhCccCCCCCEEEE
Confidence 34557776421110 0134556778999999999997
No 282
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=97.13 E-value=0.0093 Score=46.29 Aligned_cols=131 Identities=18% Similarity=0.167 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
...+++.+.+.. .+..+|+=+||=+-...+.- ...++.+++..|++..--.. +-+ .++.-|
T Consensus 12 ~~~l~~~l~~~~-----~~~~~iaclstPsl~~~l~~-----~~~~~~~~~Lle~D~RF~~~--------~~~-~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGA-----LDDTRIACLSTPSLYEALKK-----ESKPRIQSFLLEYDRRFEQF--------GGD-EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhc-----CCCCEEEEEeCcHHHHHHHh-----hcCCCccEEEEeecchHHhc--------CCc-ceEECC
Confidence 345555555532 35689999988776653222 12456789999998765332 111 345555
Q ss_pred hhhch--hhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHH
Q 025211 104 IASGL--EKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQ 181 (256)
Q Consensus 104 ~~~~~--~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 181 (256)
..... +....++||+||++|||.. .+.+.+....+..++|+++.+++++. ..+...
T Consensus 73 ~~~p~~~~~~l~~~~d~vv~DPPFl~---------------------~ec~~k~a~ti~~L~k~~~kii~~Tg-~~~~~~ 130 (162)
T PF10237_consen 73 YNEPEELPEELKGKFDVVVIDPPFLS---------------------EECLTKTAETIRLLLKPGGKIILCTG-EEMEEL 130 (162)
T ss_pred CCChhhhhhhcCCCceEEEECCCCCC---------------------HHHHHHHHHHHHHHhCccceEEEecH-HHHHHH
Confidence 54432 2223689999999999942 23356667778888899999998653 222333
Q ss_pred HHHHHHHcCCcEEEEEe
Q 025211 182 ICLQMMEKGYAARIVVQ 198 (256)
Q Consensus 182 ~~~~~~~~g~~~~~~~~ 198 (256)
+.+.+ ++......+
T Consensus 131 ~~~ll---~~~~~~f~p 144 (162)
T PF10237_consen 131 IKKLL---GLRMCDFQP 144 (162)
T ss_pred HHHHh---CeeEEeEEe
Confidence 44444 555433333
No 283
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.09 E-value=0.0068 Score=51.39 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhcccc-----cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc------
Q 025211 25 FALVDALLADRINLV-----EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH------ 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~-----~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~------ 93 (256)
+.+...+++++..+. .+...+||-+|||.|.++..++.. ++. +-|=|.|--|+=. . .+..|
T Consensus 128 d~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~----G~~--~qGNEfSy~Mli~-S-~FiLN~~~~~n 199 (369)
T KOG2798|consen 128 DQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACL----GFK--CQGNEFSYFMLIC-S-SFILNYCKQEN 199 (369)
T ss_pred hhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHh----ccc--ccccHHHHHHHHH-H-HHHHHhhccCC
Confidence 334444555554432 235689999999999999888876 443 3333655555421 1 11111
Q ss_pred CCcc-------------------------------------eEEEcchhhchhh-hcCCCccEEEECCCCCCCCCccccc
Q 025211 94 NVHA-------------------------------------DLINTDIASGLEK-RLAGLVDVMVVNPPYVPTPEDEVGR 135 (256)
Q Consensus 94 ~~~~-------------------------------------~~~~~d~~~~~~~-~~~~~fD~Ii~npP~~~~~~~~~~~ 135 (256)
.+.. ....||+.+.-.. ...+.||+|+.+ |+....
T Consensus 200 q~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTc--fFIDTa----- 272 (369)
T KOG2798|consen 200 QFTIYPFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTC--FFIDTA----- 272 (369)
T ss_pred cEEEEeeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEE--EEeech-----
Confidence 0100 1122444443221 112457877775 332211
Q ss_pred ccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe----CCC------------CHHHHHHHHHHcCCcEEE
Q 025211 136 EGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL----TAN------------DPSQICLQMMEKGYAARI 195 (256)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~----~~~------------~~~~~~~~~~~~g~~~~~ 195 (256)
...-++++.+..+|||||+-+=+.| ..+ ..+++...+...||+...
T Consensus 273 --------------~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g~~~~~siEls~edl~~v~~~~GF~~~k 334 (369)
T KOG2798|consen 273 --------------HNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHGVENEMSIELSLEDLKRVASHRGFEVEK 334 (369)
T ss_pred --------------HHHHHHHHHHHHhccCCcEEEeccceeeeccCCCCCcccccccccHHHHHHHHHhcCcEEEE
Confidence 2366889999999999999774332 111 246788888888998644
No 284
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.08 E-value=0.00071 Score=48.76 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-----CHHHHHHHHHHc
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-----DPSQICLQMMEK 189 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-----~~~~~~~~~~~~ 189 (256)
.||+||.||||............. ....+.+..+++.+.++| +|.+.++.|..- ....+++.+.+.
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~-------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~ 72 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK-------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNN 72 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc-------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcC
Confidence 699999999998766532211100 013345778899999888 999988887332 234556665543
No 285
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.029 Score=46.19 Aligned_cols=142 Identities=13% Similarity=0.154 Sum_probs=93.4
Q ss_pred cceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025211 7 QIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 7 ~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+.-+...|+.|.-|.++..+-....+.. .+ -.+...+|+|+|+..-+.-+...+.+++.-..++.+|++...++..
T Consensus 46 LFe~I~~LPEYYpTRtEaaIl~~~a~Eia-~~--~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~t 122 (321)
T COG4301 46 LFEQITRLPEYYPTRTEAAILQARAAEIA-SI--TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRAT 122 (321)
T ss_pred HHHHHhccccccCchhHHHHHHHHHHHHH-Hh--hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHH
Confidence 34445677888888877666555444432 22 2478999999999998877777777666667899999999988766
Q ss_pred HHHHHHc--CCcceEEEcchhhchhhhcCCCccEEEE--CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhc
Q 025211 87 RKTLEAH--NVHADLINTDIASGLEKRLAGLVDVMVV--NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKL 162 (256)
Q Consensus 87 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~fD~Ii~--npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (256)
.+.+... ++....+.+|....+....... --+++ .....+... +....|+.++...
T Consensus 123 a~ai~~~y~~l~v~~l~~~~~~~La~~~~~~-~Rl~~flGStlGN~tp-------------------~e~~~Fl~~l~~a 182 (321)
T COG4301 123 ATAILREYPGLEVNALCGDYELALAELPRGG-RRLFVFLGSTLGNLTP-------------------GECAVFLTQLRGA 182 (321)
T ss_pred HHHHHHhCCCCeEeehhhhHHHHHhcccCCC-eEEEEEecccccCCCh-------------------HHHHHHHHHHHhc
Confidence 6655543 4455777888776654432222 22222 111111111 1256889999999
Q ss_pred cccCeEEEE
Q 025211 163 LSKRGWLYL 171 (256)
Q Consensus 163 LkpgG~l~~ 171 (256)
|+||-.+.+
T Consensus 183 ~~pGd~~Ll 191 (321)
T COG4301 183 LRPGDYFLL 191 (321)
T ss_pred CCCcceEEE
Confidence 999999887
No 286
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.05 E-value=0.0087 Score=50.04 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=64.6
Q ss_pred CCCEEEEeccccc--HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc-ceEEEcchhhchhhhc----CC
Q 025211 42 HPVLCMEVGCGSG--YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH-ADLINTDIASGLEKRL----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G--~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~-~~~~~~d~~~~~~~~~----~~ 114 (256)
.-...||+|||-- ...-++++.. .|+++|+=+|++|-.+.-++..+..+.-. ..++++|+.+.-.-+. .+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~---~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~ 144 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRV---APDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRG 144 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH----TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHC
T ss_pred CcceEEEcccCCCCCCCHhHHHHhh---CCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHh
Confidence 3478999999944 3444555544 68999999999999999888877655421 2789999877632111 12
Q ss_pred Ccc-----EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCC
Q 025211 115 LVD-----VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAND 178 (256)
Q Consensus 115 ~fD-----~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 178 (256)
-+| .++.....+..++.+ ....++..+.+.|.||..+++++.+...
T Consensus 145 ~lD~~rPVavll~~vLh~v~D~~------------------dp~~iv~~l~d~lapGS~L~ish~t~d~ 195 (267)
T PF04672_consen 145 LLDFDRPVAVLLVAVLHFVPDDD------------------DPAGIVARLRDALAPGSYLAISHATDDG 195 (267)
T ss_dssp C--TTS--EEEECT-GGGS-CGC------------------THHHHHHHHHCCS-TT-EEEEEEEB-TT
T ss_pred cCCCCCCeeeeeeeeeccCCCcc------------------CHHHHHHHHHHhCCCCceEEEEecCCCC
Confidence 233 333433333222211 1578899999999999999998876653
No 287
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.04 E-value=0.0099 Score=47.07 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=80.2
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH----H--HHHcCCcc-eEEEcchhhchhhhc
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK----T--LEAHNVHA-DLINTDIASGLEKRL 112 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~----~--~~~~~~~~-~~~~~d~~~~~~~~~ 112 (256)
-+++.+|+|+-.|.|.++.-++..++ |+..|+++-..+...-..+. + ..+....+ +.+-.+..... .
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vg---p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~---~ 119 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVG---PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG---A 119 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcC---CceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC---C
Confidence 36889999999999999988888764 55588887655442211111 1 11111111 33333333332 2
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC--------------C
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN--------------D 178 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------~ 178 (256)
.+..|+++.+--|+.... .++.. ....++...+++.|||||++.+..+... .
T Consensus 120 pq~~d~~~~~~~yhdmh~----------k~i~~----~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~ 185 (238)
T COG4798 120 PQKLDLVPTAQNYHDMHN----------KNIHP----ATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRID 185 (238)
T ss_pred CCcccccccchhhhhhhc----------cccCc----chHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccC
Confidence 356777777555443221 12211 1367788889999999999999775322 2
Q ss_pred HHHHHHHHHHcCCcEEE
Q 025211 179 PSQICLQMMEKGYAARI 195 (256)
Q Consensus 179 ~~~~~~~~~~~g~~~~~ 195 (256)
...+.+..+..||....
T Consensus 186 ~a~V~a~veaaGFkl~a 202 (238)
T COG4798 186 PAVVIAEVEAAGFKLEA 202 (238)
T ss_pred hHHHHHHHHhhcceeee
Confidence 23456666778887644
No 288
>PHA01634 hypothetical protein
Probab=97.04 E-value=0.0036 Score=46.00 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=53.3
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~I 119 (256)
..+++|+|+|.+.|.-++.++.. +. -.|+++|.++...+..+++++.+.+-. -+...++.. . =+.||+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~----GA-K~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~eW~~---~--Y~~~Di~ 96 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLR----GA-SFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKGEWNG---E--YEDVDIF 96 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhc----Cc-cEEEEeccCHHHHHHHHHHhhhheeeeceeecccccc---c--CCCcceE
Confidence 47899999999999999988876 22 379999999999999999998775432 222232221 2 2578888
Q ss_pred EEC
Q 025211 120 VVN 122 (256)
Q Consensus 120 i~n 122 (256)
+.+
T Consensus 97 ~iD 99 (156)
T PHA01634 97 VMD 99 (156)
T ss_pred EEE
Confidence 774
No 289
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.83 E-value=0.0039 Score=51.17 Aligned_cols=77 Identities=18% Similarity=0.256 Sum_probs=48.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---C-C------cceEEEcchhhchhhhcC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---N-V------HADLINTDIASGLEKRLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~-~------~~~~~~~d~~~~~~~~~~ 113 (256)
.+|||.=+|-|.-++-++.. |++|+++|-||......++-+... . + ..+++++|..+.+. ...
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-~~~ 149 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-QPD 149 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-CHS
T ss_pred CEEEECCCcchHHHHHHHcc------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-hcC
Confidence 59999999999998888764 458999999999887776544332 1 2 12899999988876 446
Q ss_pred CCccEEEECCCCCC
Q 025211 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
.+||+|+++|=|-+
T Consensus 150 ~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 150 NSFDVVYFDPMFPE 163 (234)
T ss_dssp S--SEEEE--S---
T ss_pred CCCCEEEECCCCCC
Confidence 89999999987754
No 290
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.80 E-value=0.0025 Score=54.49 Aligned_cols=88 Identities=16% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc
Q 025211 28 VDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG 107 (256)
Q Consensus 28 ~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~ 107 (256)
.+.+++.+. ..++..++|.=.|.|..+.++.+. .+++.++|+|.++++++.+++++....-...++++++.+.
T Consensus 9 l~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~----~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l 81 (310)
T PF01795_consen 9 LKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEK----LPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNL 81 (310)
T ss_dssp HHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-----TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGH
T ss_pred HHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHh----CCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHH
Confidence 344444443 367889999999999988777776 5568999999999999999887764433447888887665
Q ss_pred hhh---h-cCCCccEEEEC
Q 025211 108 LEK---R-LAGLVDVMVVN 122 (256)
Q Consensus 108 ~~~---~-~~~~fD~Ii~n 122 (256)
... . ...++|.|+.+
T Consensus 82 ~~~l~~~~~~~~~dgiL~D 100 (310)
T PF01795_consen 82 DEYLKELNGINKVDGILFD 100 (310)
T ss_dssp HHHHHHTTTTS-EEEEEEE
T ss_pred HHHHHHccCCCccCEEEEc
Confidence 432 2 23579999983
No 291
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.80 E-value=0.0072 Score=52.05 Aligned_cols=117 Identities=21% Similarity=0.258 Sum_probs=67.6
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhc-CCC
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRL-AGL 115 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~-~~~ 115 (256)
...+++|||+|.|.|.-..++-.. +|.. .++-++.|+..-+. -..+..|-... .....|+.....++. ...
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i----~Pdl~sa~ile~sp~lrkV-~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ 185 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDI----WPDLKSAVILEASPALRKV-GDTLAENVSTEKTDWRASDVTEDRLSLPAADL 185 (484)
T ss_pred CcCcchhhccCCCCchhhhhhccc----CCCchhhhhhccCHHHHHH-HHHHHhhcccccCCCCCCccchhccCCCccce
Confidence 356789999999999866554444 5542 46677777754333 33444443221 333444433322221 345
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
|++++.---..+. +. ...+...++.+..++.|||.++++.++....
T Consensus 186 ytl~i~~~eLl~d---------------~~---ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 186 YTLAIVLDELLPD---------------GN---EKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred eehhhhhhhhccc---------------cC---cchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 7777652111100 11 1124558999999999999999998766543
No 292
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.0081 Score=52.07 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHHc
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
+.++.++++.+.......+-.++|+|.|+|.+...+...+.+-+| .+++.-+|+|++..+.-+++++..
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 444555666665544345678999999999998877777655555 689999999999988877776644
No 293
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.77 E-value=0.0088 Score=51.82 Aligned_cols=96 Identities=24% Similarity=0.270 Sum_probs=64.8
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
+++++|+=.|+| .|..++.+++.+ +++|+++|.+++-.+.|++.- .+ .++...-.+..... .+.||+|
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~-----ga~Via~~~~~~K~e~a~~lG----Ad-~~i~~~~~~~~~~~-~~~~d~i 233 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAM-----GAEVIAITRSEEKLELAKKLG----AD-HVINSSDSDALEAV-KEIADAI 233 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHc-----CCeEEEEeCChHHHHHHHHhC----Cc-EEEEcCCchhhHHh-HhhCcEE
Confidence 688999999887 345666666653 379999999999999888742 22 33333211122221 2349999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
+..-| ...+....+.|++||+++++-..
T Consensus 234 i~tv~----------------------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 234 IDTVG----------------------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred EECCC----------------------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 98533 24467778899999999997654
No 294
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.76 E-value=0.0089 Score=50.33 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCc---ceEEEcchhhchhhhcCCCc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVH---ADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~---~~~~~~d~~~~~~~~~~~~f 116 (256)
.+++||=+|-|.|.+..+.++. . .- -++.-+|++...++..++-.... +.. ..++.+|...++.....++|
T Consensus 121 npkkvlVVgggDggvlrevikH-~--~v-e~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-K--SV-ENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-c--cc-cceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCc
Confidence 6799999999999976555543 1 11 26899999999999888776543 322 37888999888876667899
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+.+- +++ ..+.. ..+...+.+.+.+.||++|+++....
T Consensus 197 dVii~ds-----sdp----vgpa~--------~lf~~~~~~~v~~aLk~dgv~~~q~e 237 (337)
T KOG1562|consen 197 DVIITDS-----SDP----VGPAC--------ALFQKPYFGLVLDALKGDGVVCTQGE 237 (337)
T ss_pred eEEEEec-----CCc----cchHH--------HHHHHHHHHHHHHhhCCCcEEEEecc
Confidence 9999842 010 00111 22467788889999999999998653
No 295
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.74 E-value=0.035 Score=42.02 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=55.0
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcc
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTD 103 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d 103 (256)
.-++.++..+. ..+..+.+|+|+|.|.+-+++++... ..-+|+|++|=.+..++-..-+.++.. .+...|
T Consensus 59 eQv~nVLSll~---~n~~GklvDlGSGDGRiVlaaar~g~-----~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkd 130 (199)
T KOG4058|consen 59 EQVENVLSLLR---GNPKGKLVDLGSGDGRIVLAAARCGL-----RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKD 130 (199)
T ss_pred HHHHHHHHHcc---CCCCCcEEeccCCCceeehhhhhhCC-----CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhh
Confidence 33445555443 46778999999999999888777632 357899999999998888777777654 777778
Q ss_pred hhhc
Q 025211 104 IASG 107 (256)
Q Consensus 104 ~~~~ 107 (256)
+...
T Consensus 131 lwK~ 134 (199)
T KOG4058|consen 131 LWKV 134 (199)
T ss_pred hhhc
Confidence 7665
No 296
>PRK10458 DNA cytosine methylase; Provisional
Probab=96.73 E-value=0.15 Score=46.47 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=90.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh-----------
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------- 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------- 110 (256)
..-+++|+.||.|.+.+.+-.. +.+ .|.++|+++.+.+.-+.|....+ ...++.+|+.+....
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~a----G~~-~v~a~Eid~~A~~TY~~N~~~~p-~~~~~~~DI~~i~~~~~~~~~~~~~~ 160 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAI----GGQ-CVFTSEWNKHAVRTYKANWYCDP-ATHRFNEDIRDITLSHKEGVSDEEAA 160 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHc----CCE-EEEEEechHHHHHHHHHHcCCCC-ccceeccChhhCccccccccchhhhh
Confidence 3569999999999987766543 222 57899999999888777742111 113445565554210
Q ss_pred ----hcCCCccEEEECCCCCCCCCcccccccc---hhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC-------
Q 025211 111 ----RLAGLVDVMVVNPPYVPTPEDEVGREGI---ASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA------- 176 (256)
Q Consensus 111 ----~~~~~fD~Ii~npP~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~------- 176 (256)
..-..+|+++..||--..+......... ...+.++..+ ..+..+++. .+.++|.-+ +++...
T Consensus 161 ~~~~~~~p~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg-~Lf~~~~ri-i~~~kPk~f--vlENV~gl~s~~~ 236 (467)
T PRK10458 161 EHIRQHIPDHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQG-TLFFDVARI-IDAKRPAIF--VLENVKNLKSHDK 236 (467)
T ss_pred hhhhccCCCCCEEEEcCCCCccchhcccccccccccccccCCccc-cHHHHHHHH-HHHhCCCEE--EEeCcHhhhcccc
Confidence 0012589999999887666543211100 0111112221 122333433 334567633 323211
Q ss_pred -CCHHHHHHHHHHcCCcEEE----------EE-e---cCCCCccEEEEEEEecC
Q 025211 177 -NDPSQICLQMMEKGYAARI----------VV-Q---RSTEEENLHIIKFWRDF 215 (256)
Q Consensus 177 -~~~~~~~~~~~~~g~~~~~----------~~-~---~~~~~~~~~l~~~~~~~ 215 (256)
.....+...|.+.||.+.. +. . ..+..++++++..+++.
T Consensus 237 g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlna~~fVPQ~R~RvfiVg~r~~~ 290 (467)
T PRK10458 237 GKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDL 290 (467)
T ss_pred cHHHHHHHHHHHHcCCeEEeccccCcccceEeehhhCCCccCcEEEEEEEeCCc
Confidence 1234677778888988642 10 0 34567788888777643
No 297
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.72 E-value=0.065 Score=43.96 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=82.6
Q ss_pred ccccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC
Q 025211 17 VYEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV 95 (256)
Q Consensus 17 ~~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~ 95 (256)
.|+-+.. ...|++.|+-=...+.-+++.+||=+|+++|.---.++..+ .|..-|+++|.++.+=+... |++....
T Consensus 130 EyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiV---GpeG~VYAVEfs~rsGRdL~-nmAkkRt 205 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIV---GPEGCVYAVEFSHRSGRDLI-NMAKKRT 205 (317)
T ss_pred EEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhccc---CCCceEEEEEecccchHHHH-HHhhccC
Confidence 4666655 67788887766666667899999999999998654455554 57779999999876543322 1111122
Q ss_pred cceEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 96 HADLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 96 ~~~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.-.+..|+..+.. ...-.-+|+|+++-+.- + -..-+.-++...||+||-++++..
T Consensus 206 NiiPIiEDArhP~KYRmlVgmVDvIFaDvaqp------------d-----------q~RivaLNA~~FLk~gGhfvisik 262 (317)
T KOG1596|consen 206 NIIPIIEDARHPAKYRMLVGMVDVIFADVAQP------------D-----------QARIVALNAQYFLKNGGHFVISIK 262 (317)
T ss_pred CceeeeccCCCchheeeeeeeEEEEeccCCCc------------h-----------hhhhhhhhhhhhhccCCeEEEEEe
Confidence 23445556655422 11123579998875421 0 012233466778999999998664
No 298
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.65 E-value=0.0097 Score=53.68 Aligned_cols=130 Identities=14% Similarity=0.161 Sum_probs=77.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..-..|+|..+|.|.|+.++... .|...-.-|..-.-.-..+...|+-... .|.-+.... .+.+||+|-
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~--------~VWVMNVVP~~~~ntL~vIydRGLIG~y--hDWCE~fsT-YPRTYDLlH 432 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD--------PVWVMNVVPVSGPNTLPVIYDRGLIGVY--HDWCEAFST-YPRTYDLLH 432 (506)
T ss_pred cceeeeeeecccccHHHHHhccC--------CceEEEecccCCCCcchhhhhcccchhc--cchhhccCC-CCcchhhee
Confidence 34478999999999986444332 2444433333111111223333332211 233333322 257899998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEEEecC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAARIVVQRS 200 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 200 (256)
++.-|....+ ...+..++-++.++|+|+|.+++- ........+..++....|+........
T Consensus 433 A~~lfs~~~~------------------rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 433 ADGLFSLYKD------------------RCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred hhhhhhhhcc------------------cccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhCcceEEEEecCC
Confidence 8765543222 123678899999999999999983 334445678888888888877666544
No 299
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.65 E-value=0.0018 Score=56.93 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=55.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEEcchhhchh
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLINTDIASGLE 109 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~~d~~~~~~ 109 (256)
+++..|.|+.||.|-+.+.+++. ++.|++-|+++++++..+.|+..|.+.. .+++.|+.+++.
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKK------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred CCcchhhhhhcCcCccccchhhc------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 68999999999999999888876 5899999999999999999999987653 788888877763
No 300
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.64 E-value=0.071 Score=46.14 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=84.8
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCC
Q 025211 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
|+|+.||.|.+...+.+. +-+ .+.++|+++.+++..+.|... .++.+|+.+..... -..+|+++..||-
T Consensus 1 vidLF~G~GG~~~Gl~~a----G~~-~~~a~e~~~~a~~ty~~N~~~-----~~~~~Di~~~~~~~-~~~~dvl~gg~PC 69 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA----GFK-CVFASEIDKYAQKTYEANFGN-----KVPFGDITKISPSD-IPDFDILLGGFPC 69 (315)
T ss_pred CEEEecCccHHHHHHHHc----CCe-EEEEEeCCHHHHHHHHHhCCC-----CCCccChhhhhhhh-CCCcCEEEecCCC
Confidence 689999999987666554 222 467899999999988887531 45567777764321 1358999999997
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC--------CCHHHHHHHHHHcCCcEEEEE
Q 025211 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA--------NDPSQICLQMMEKGYAARIVV 197 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--------~~~~~~~~~~~~~g~~~~~~~ 197 (256)
-..+....... + .+.++ .....+++- .+.++|. +++++... .....+...+++.||......
T Consensus 70 q~fS~ag~~~~-----~-~d~r~-~L~~~~~r~-i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~ 139 (315)
T TIGR00675 70 QPFSIAGKRKG-----F-EDTRG-TLFFEIVRI-LKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKV 139 (315)
T ss_pred cccchhcccCC-----C-CCchh-hHHHHHHHH-HhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEE
Confidence 66554321110 0 01111 122333333 3346775 33333221 123456777888898764432
Q ss_pred e------cCCCCccEEEEEEE
Q 025211 198 Q------RSTEEENLHIIKFW 212 (256)
Q Consensus 198 ~------~~~~~~~~~l~~~~ 212 (256)
. ..+..++++++-.+
T Consensus 140 l~a~dyGvPQ~R~R~f~ia~r 160 (315)
T TIGR00675 140 LNAKDFGVPQNRERIYIVGFR 160 (315)
T ss_pred EcHHHCCCCCCccEEEEEEEe
Confidence 1 23456777776655
No 301
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.56 E-value=0.0037 Score=56.06 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=81.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh--cCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR--LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~--~~~~f 116 (256)
.++.+|||.-|+||.-++-.++.+.. -.+|++-|.++.+++..++|+..|+... +..+.|+.-.+... ....|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~---v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~F 184 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPG---VRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFF 184 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcc---hhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhcccccccc
Confidence 46789999999999998888887542 2479999999999999999999998765 77778876655432 24789
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|=.+ ||.. ...||+.+.+.++.||.+++..
T Consensus 185 DvIDLD-PyGs------------------------~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 185 DVIDLD-PYGS------------------------PSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ceEecC-CCCC------------------------ccHHHHHHHHHhhcCCEEEEEe
Confidence 999776 4432 2466888888899999999854
No 302
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.43 E-value=0.0069 Score=49.25 Aligned_cols=72 Identities=15% Similarity=0.243 Sum_probs=38.9
Q ss_pred ccEEEECCCCCCCCCc---cc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHH-HHHHHHHHcC
Q 025211 116 VDVMVVNPPYVPTPED---EV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPS-QICLQMMEKG 190 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~~~~g 190 (256)
+|+|+++|||...... .. ........+ ...+..++.++.++|||||.+++......... ....+.+..|
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y------~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEY------LEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG 74 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHH------HHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHH------HHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh
Confidence 5999999999876651 10 000001111 22467788999999999999988654333222 3444444456
Q ss_pred -CcE
Q 025211 191 -YAA 193 (256)
Q Consensus 191 -~~~ 193 (256)
|..
T Consensus 75 ~~~~ 78 (231)
T PF01555_consen 75 GFFL 78 (231)
T ss_dssp T-EE
T ss_pred hhhe
Confidence 654
No 303
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.05 E-value=0.023 Score=41.92 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=59.3
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcC-CCccEEEECCCCCC
Q 025211 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLA-GLVDVMVVNPPYVP 127 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~-~~fD~Ii~npP~~~ 127 (256)
|.|..++.+++.+ +++|+++|.++...+.+++ .|.. .++.. |+.+....... ..+|+|+-...
T Consensus 1 ~vG~~a~q~ak~~-----G~~vi~~~~~~~k~~~~~~----~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAM-----GAKVIATDRSEEKLELAKE----LGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHT-----TSEEEEEESSHHHHHHHHH----TTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHc-----CCEEEEEECCHHHHHHHHh----hccc-ccccccccccccccccccccccceEEEEecC---
Confidence 4577777777763 3799999999998888765 3322 22222 23333333333 37999987532
Q ss_pred CCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 128 TPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
....++...++|+++|+++++....
T Consensus 68 ------------------------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ------------------------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ------------------------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ------------------------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2467888889999999999976443
No 304
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.03 E-value=0.018 Score=51.72 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=83.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhchhhh-----cCCC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASGLEKR-----LAGL 115 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~~~~~-----~~~~ 115 (256)
-+.++|=+|-|.|.++..+... .|...+++++++|.+++.|+.++..-.- .+.++-.|..+..... .+..
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~----~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~ 370 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMS----LPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDIC 370 (482)
T ss_pred ccCcEEEEecCCCccccceeee----cCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccC
Confidence 4577888888999976555444 6778999999999999999998764332 2356656655554321 2467
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe--CCCCHHHHHHHHHHc
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL--TANDPSQICLQMMEK 189 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~--~~~~~~~~~~~~~~~ 189 (256)
||+++.+-= .++ . ....+. ...-+...++......|.|.|.+++... +.....++...+++.
T Consensus 371 ~dvl~~dvd---s~d-~-------~g~~~p-p~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~v 434 (482)
T KOG2352|consen 371 PDVLMVDVD---SKD-S-------HGMQCP-PPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAKV 434 (482)
T ss_pred CcEEEEECC---CCC-c-------ccCcCC-chHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhhh
Confidence 999998410 000 0 000011 1112356788899999999999987443 344455666666553
No 305
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.95 E-value=0.061 Score=43.78 Aligned_cols=126 Identities=19% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCC--C---ceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhc------hh
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVP--G---VQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASG------LE 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~--~---~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~------~~ 109 (256)
.-++|+|+|...|.++..+++.|-...+ + ..|++||+.+-+ .++. --+++|+.+. +.
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHH
Confidence 3589999999999999999988754212 1 249999997632 1111 3344554433 22
Q ss_pred hhcCCCccEEEECCCCCCCCCccc-ccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHH
Q 025211 110 KRLAGLVDVMVVNPPYVPTPEDEV-GREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
.+..++.|+|+|+.. +.+ +-++.+.+. ..+.+...|.-...+|||||.++--....+....+-..|..
T Consensus 110 hfggekAdlVvcDGA------PDvTGlHd~DEy~-----Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~tslLysql~~ 178 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGA------PDVTGLHDLDEYV-----QAQLLLAALNIATCVLKPGGSFVAKIFRGRDTSLLYSQLRK 178 (294)
T ss_pred HhCCCCccEEEeCCC------CCccccccHHHHH-----HHHHHHHHHHHHhheecCCCeeehhhhccCchHHHHHHHHH
Confidence 344568999999642 111 111111110 01233444556678899999998744444444555555544
Q ss_pred c
Q 025211 189 K 189 (256)
Q Consensus 189 ~ 189 (256)
.
T Consensus 179 f 179 (294)
T KOG1099|consen 179 F 179 (294)
T ss_pred H
Confidence 3
No 306
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.92 E-value=0.017 Score=51.18 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=46.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhc
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASG 107 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~ 107 (256)
...|||+|+|||.+++-++.. +.+ .|+|+|.-..|.+.|++....||+.. +++.....+.
T Consensus 67 kv~vLdigtGTGLLSmMAvra----gaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRA----GAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred eEEEEEccCCccHHHHHHHHh----cCC-eEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 357999999999987665555 333 79999999999999999999999865 6665554443
No 307
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=95.87 E-value=0.066 Score=39.66 Aligned_cols=82 Identities=15% Similarity=0.223 Sum_probs=55.3
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
++..+|+.+.++.. ...||+|+.++ |.+..+++ .| ...++..+.+++++||++.- ++
T Consensus 34 ~L~~gDa~~~l~~l-~~~~Da~ylDg-FsP~~nPe--------lW---------s~e~~~~l~~~~~~~~~l~T----ys 90 (124)
T PF05430_consen 34 TLWFGDAREMLPQL-DARFDAWYLDG-FSPAKNPE--------LW---------SEELFKKLARLSKPGGTLAT----YS 90 (124)
T ss_dssp EEEES-HHHHHHHB--T-EEEEEE-S-S-TTTSGG--------GS---------SHHHHHHHHHHEEEEEEEEE----S-
T ss_pred EEEEcHHHHHHHhC-cccCCEEEecC-CCCcCCcc--------cC---------CHHHHHHHHHHhCCCcEEEE----ee
Confidence 78889988877653 47899999985 44433332 11 46889999999999998876 34
Q ss_pred CHHHHHHHHHHcCCcEEEEEecCCC
Q 025211 178 DPSQICLQMMEKGYAARIVVQRSTE 202 (256)
Q Consensus 178 ~~~~~~~~~~~~g~~~~~~~~~~~~ 202 (256)
....+++.+...||.+........+
T Consensus 91 ~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 91 SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp -BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 4677999999999997655544333
No 308
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.85 E-value=0.079 Score=46.53 Aligned_cols=104 Identities=19% Similarity=0.172 Sum_probs=66.2
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcC-CCccEE
Q 025211 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLA-GLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~-~~fD~I 119 (256)
++.+|+=+|||. |.+++.+++. .....|+++|.+++.++.|++..........-.. +.......... ..+|++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~----~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~-~~~~~~~~~t~g~g~D~v 242 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKL----LGASVVIVVDRSPERLELAKEAGGADVVVNPSED-DAGAEILELTGGRGADVV 242 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH----cCCceEEEeCCCHHHHHHHHHhCCCeEeecCccc-cHHHHHHHHhCCCCCCEE
Confidence 445999999995 6666666666 3456899999999999999874321111100000 22111112222 369999
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
+-.-- ....+.++.++++++|.+.++.....
T Consensus 243 ie~~G---------------------------~~~~~~~ai~~~r~gG~v~~vGv~~~ 273 (350)
T COG1063 243 IEAVG---------------------------SPPALDQALEALRPGGTVVVVGVYGG 273 (350)
T ss_pred EECCC---------------------------CHHHHHHHHHHhcCCCEEEEEeccCC
Confidence 86311 24578899999999999999765444
No 309
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.65 E-value=0.014 Score=48.75 Aligned_cols=66 Identities=21% Similarity=0.359 Sum_probs=46.8
Q ss_pred HHHHHHHhhcccc-cCCCCEEEEecccccHHHHHHHHHhcccCC----CceEEEEeCCHHHHHHHHHHHHH
Q 025211 27 LVDALLADRINLV-EHHPVLCMEVGCGSGYVITSLALMLGQEVP----GVQYIATDINPYAVEVTRKTLEA 92 (256)
Q Consensus 27 l~~~l~~~~~~~~-~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~----~~~v~giD~~~~~i~~a~~~~~~ 92 (256)
++.++...+.... +..+.+|+|+|.|+|.++..+...+.+..| ..+++-+|+|+.+.+.-++++..
T Consensus 2 ia~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 2 IARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp HHHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred hHHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 4556666655442 223579999999999999888888876534 47899999999998887777654
No 310
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=95.63 E-value=0.042 Score=41.57 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc
Q 025211 24 SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTD 103 (256)
Q Consensus 24 ~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d 103 (256)
.+.+.+|+...... -..-|||+|-|+|.- -..|.+..|+-.|+++|-.-.+-..+ ......++.+|
T Consensus 14 QR~~L~~a~~~v~~----~~G~VlElGLGNGRT----ydHLRe~~p~R~I~vfDR~l~~hp~~------~P~~~~~ilGd 79 (160)
T PF12692_consen 14 QRDCLNWAAAQVAG----LPGPVLELGLGNGRT----YDHLREIFPDRRIYVFDRALACHPSS------TPPEEDLILGD 79 (160)
T ss_dssp HHHHHHHHHHHTTT------S-EEEE--TTSHH----HHHHHHH--SS-EEEEESS--S-GGG---------GGGEEES-
T ss_pred HHHHHHHHHHHhcC----CCCceEEeccCCCcc----HHHHHHhCCCCeEEEEeeecccCCCC------CCchHheeecc
Confidence 34566677776643 458899999999994 34455558888999999643322211 11123899999
Q ss_pred hhhchhh--hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHH--HHHHHHHHHhhccccCeEEEE
Q 025211 104 IASGLEK--RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRA--VIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 104 ~~~~~~~--~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~l~~ 171 (256)
+.+.++. +.....-++-++.-. +.+..+ ....+-.-+..+|.|||+++-
T Consensus 80 i~~tl~~~~~~g~~a~laHaD~G~-------------------g~~~~d~a~a~~lspli~~~la~gGi~vS 132 (160)
T PF12692_consen 80 IRETLPALARFGAGAALAHADIGT-------------------GDKEKDDATAAWLSPLIAPVLAPGGIMVS 132 (160)
T ss_dssp HHHHHHHHHHH-S-EEEEEE-----------------------S-HHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHhHHHHhcCCceEEEEeecCC-------------------CCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 9988765 333444444332111 111111 223334456789999999885
No 311
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.54 E-value=0.02 Score=40.86 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY 81 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~ 81 (256)
.+....+|+|||+|.+.--+.+. +..-+|+|.-..
T Consensus 57 ~~~~~FVDlGCGNGLLV~IL~~E------Gy~G~GiD~R~R 91 (112)
T PF07757_consen 57 QKFQGFVDLGCGNGLLVYILNSE------GYPGWGIDARRR 91 (112)
T ss_pred CCCCceEEccCCchHHHHHHHhC------CCCccccccccc
Confidence 35678999999999964333322 446778886543
No 312
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.49 E-value=0.11 Score=46.05 Aligned_cols=120 Identities=18% Similarity=0.180 Sum_probs=63.4
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcc-hhhchhhhc-CCCc
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTD-IASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d-~~~~~~~~~-~~~f 116 (256)
.++.+||..|||. |..++.+++..+ -..++++|.+++..+.+++.. +... .....+ +.+...... ...+
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g----~~~vi~~~~~~~~~~~~~~~~---~~~vi~~~~~~~~~~~l~~~~~~~~~ 255 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLG----AERVIAIDRVPERLEMARSHL---GAETINFEEVDDVVEALRELTGGRGP 255 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC----CCEEEEEcCCHHHHHHHHHcC---CcEEEcCCcchHHHHHHHHHcCCCCC
Confidence 4678999999877 777666666532 226999999999988887642 1111 111121 222222222 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-.-..... ....-....+....+ ....+..+.+.|+++|+++.+.
T Consensus 256 D~vld~vg~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 256 DVCIDAVGMEAHGS--PLHKAEQALLKLETD----RPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred CEEEECCCCccccc--ccccccccccccccC----chHHHHHHHHHhccCCEEEEEc
Confidence 99987421000000 000000000000000 1345777888999999999864
No 313
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=95.41 E-value=0.58 Score=37.84 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=54.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchh-hchhhhcCCCccE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIA-SGLEKRLAGLVDV 118 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~-~~~~~~~~~~fD~ 118 (256)
.-+.+++.+|+.|..+..++.....+..+.++++|-.++......++.+...+... +|+.++.. +.+..+ ..+|+
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~--~~iDF 118 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL--KGIDF 118 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhc--cCCCE
Confidence 55889999777654333333333333567899999999888888888887777653 88888744 444443 57899
Q ss_pred EEEC
Q 025211 119 MVVN 122 (256)
Q Consensus 119 Ii~n 122 (256)
++.+
T Consensus 119 ~vVD 122 (218)
T PF07279_consen 119 VVVD 122 (218)
T ss_pred EEEe
Confidence 9885
No 314
>PTZ00357 methyltransferase; Provisional
Probab=95.35 E-value=0.059 Score=50.62 Aligned_cols=106 Identities=20% Similarity=0.204 Sum_probs=66.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH-HHcCCc---------ceEEEcchhhchhhh--
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL-EAHNVH---------ADLINTDIASGLEKR-- 111 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~-~~~~~~---------~~~~~~d~~~~~~~~-- 111 (256)
..|+=+|+|-|-+--...+.....+-..+|++||.|+.++.....+. ....+. .+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 46899999999765444444433344678999999966554444432 222331 389999998874321
Q ss_pred -------cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcccc----CeE
Q 025211 112 -------LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSK----RGW 168 (256)
Q Consensus 112 -------~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp----gG~ 168 (256)
.-+++|+||+- +.|.....+...+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVSE-------------------LLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE-------------------LLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehHh-------------------hhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 01368999882 122222223356778888888876 776
No 315
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.27 E-value=0.14 Score=42.60 Aligned_cols=129 Identities=12% Similarity=0.050 Sum_probs=69.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccC-CCceEEEEeCCH--------------------------HHHHHHHHHHHHc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEV-PGVQYIATDINP--------------------------YAVEVTRKTLEAH 93 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~-~~~~v~giD~~~--------------------------~~i~~a~~~~~~~ 93 (256)
.-++.|+|.||-.|..++.++..+.... ++-++++.|.=+ ...+..++|+...
T Consensus 73 ~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~ 152 (248)
T PF05711_consen 73 DVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARY 152 (248)
T ss_dssp TS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCT
T ss_pred CCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHc
Confidence 4578999999999987766655553221 344677777311 1234444454444
Q ss_pred CC---cceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 94 NV---HADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 94 ~~---~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
++ +..++.|.+.+.++.....++-++-.+.=+ -+.....|+.++..|.|||+++
T Consensus 153 gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~Dl-----------------------YesT~~aLe~lyprl~~GGiIi 209 (248)
T PF05711_consen 153 GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDL-----------------------YESTKDALEFLYPRLSPGGIII 209 (248)
T ss_dssp TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---S-----------------------HHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCCcccEEEECCcchhhhccCCCccEEEEEEeccc-----------------------hHHHHHHHHHHHhhcCCCeEEE
Confidence 43 227889998887765444555555443111 1234577889999999999999
Q ss_pred EEEeCCCC---HHHHHHHHHHcCCcEE
Q 025211 171 LVTLTAND---PSQICLQMMEKGYAAR 194 (256)
Q Consensus 171 ~~~~~~~~---~~~~~~~~~~~g~~~~ 194 (256)
+ ..+.. ...+.+.+.+.|....
T Consensus 210 ~--DDY~~~gcr~AvdeF~~~~gi~~~ 234 (248)
T PF05711_consen 210 F--DDYGHPGCRKAVDEFRAEHGITDP 234 (248)
T ss_dssp E--SSTTTHHHHHHHHHHHHHTT--S-
T ss_pred E--eCCCChHHHHHHHHHHHHcCCCCc
Confidence 8 33433 2245555566666543
No 316
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=95.08 E-value=0.32 Score=42.48 Aligned_cols=135 Identities=14% Similarity=0.089 Sum_probs=67.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHh----c--------ccCCCceEEEEeCCHHHHHHHHHHHHHcC-----Ccc---eEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALML----G--------QEVPGVQYIATDINPYAVEVTRKTLEAHN-----VHA---DLI 100 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l----~--------~~~~~~~v~giD~~~~~i~~a~~~~~~~~-----~~~---~~~ 100 (256)
...-+|+|+||.+|..++.+...+ . +..|..+|+--|+-.+-....=+.+..+. ... ..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 466899999999999888776643 1 12345789999976555544433332221 111 333
Q ss_pred EcchhhchhhhcCCCccEEEECCCCCCCCCc-ccccc-c----c-hhhhcC-CCCc----------HHHHHHHHHHHhhc
Q 025211 101 NTDIASGLEKRLAGLVDVMVVNPPYVPTPED-EVGRE-G----I-ASAWAG-GENG----------RAVIDKILPSADKL 162 (256)
Q Consensus 101 ~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~-~~~~~-~----~-~~~~~~-~~~~----------~~~~~~~l~~~~~~ 162 (256)
-+.+...+ +++++.|++++....+..+.. +.... . . ...+.. .... ...+..+|+.=.+-
T Consensus 95 pgSFy~rL--fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 95 PGSFYGRL--FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp ES-TTS----S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cchhhhcc--CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 44444433 236899999996655554432 11111 0 0 011111 1010 12345566666677
Q ss_pred cccCeEEEEEEeCCC
Q 025211 163 LSKRGWLYLVTLTAN 177 (256)
Q Consensus 163 LkpgG~l~~~~~~~~ 177 (256)
|+|||+++++..+..
T Consensus 173 Lv~GG~mvl~~~gr~ 187 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRD 187 (334)
T ss_dssp EEEEEEEEEEEEE-S
T ss_pred eccCcEEEEEEeecc
Confidence 999999999776443
No 317
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.94 E-value=0.79 Score=32.93 Aligned_cols=108 Identities=16% Similarity=0.130 Sum_probs=68.4
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEECCCCCCC
Q 025211 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVNPPYVPT 128 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~npP~~~~ 128 (256)
||.|.++..+++.|.+. +..|+.+|.+++.++.+++.. ..++.+|..+.. ....-.+.|.+++.-+
T Consensus 4 ~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~~------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREEG------VEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHTT------SEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhcc------cccccccchhhhHHhhcCccccCEEEEccC----
Confidence 78889999999988763 358999999999988776532 378889987653 2222357888887322
Q ss_pred CCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025211 129 PEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
.+.....+-...+-+.|...++.... ..+..+.+.+.|....
T Consensus 72 --------------------~d~~n~~~~~~~r~~~~~~~ii~~~~----~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 72 --------------------DDEENLLIALLARELNPDIRIIARVN----DPENAELLRQAGADHV 113 (116)
T ss_dssp --------------------SHHHHHHHHHHHHHHTTTSEEEEEES----SHHHHHHHHHTT-SEE
T ss_pred --------------------CHHHHHHHHHHHHHHCCCCeEEEEEC----CHHHHHHHHHCCcCEE
Confidence 01122334444556778878777442 2445677777776543
No 318
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.46 E-value=0.3 Score=41.97 Aligned_cols=99 Identities=19% Similarity=0.219 Sum_probs=66.0
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE----cchhhchhhh-c
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN----TDIASGLEKR-L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~----~d~~~~~~~~-~ 112 (256)
+.+.+||=+|+| .|..++..|+.++ ..+|+.+|+++..++.|++ + |.+. .... .++.+..... .
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~G----A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g 239 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMG----ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALG 239 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcC----CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcc
Confidence 578999999999 4777777777743 4589999999999999988 3 3332 1111 1222222211 1
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
...+|+.+-.-- .+..++.....++.||.++++..
T Consensus 240 ~~~~d~~~dCsG---------------------------~~~~~~aai~a~r~gGt~vlvg~ 274 (354)
T KOG0024|consen 240 KKQPDVTFDCSG---------------------------AEVTIRAAIKATRSGGTVVLVGM 274 (354)
T ss_pred ccCCCeEEEccC---------------------------chHHHHHHHHHhccCCEEEEecc
Confidence 245888876311 45567777889999999777654
No 319
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=94.36 E-value=0.45 Score=40.91 Aligned_cols=96 Identities=20% Similarity=0.243 Sum_probs=58.4
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||..|+| .|..++.+++. .+++|++++.+++..+.+++ .+.+. ++.. +............+
T Consensus 164 ~~~~~vli~g~g~vG~~~~~la~~-----~G~~V~~~~~s~~~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~~~~~~ 233 (338)
T cd08254 164 KPGETVLVIGLGGLGLNAVQIAKA-----MGAAVIAVDIKEEKLELAKE----LGADE-VLNSLDDSPKDKKAAGLGGGF 233 (338)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHH-----cCCEEEEEcCCHHHHHHHHH----hCCCE-EEcCCCcCHHHHHHHhcCCCc
Confidence 467788887765 35555555554 24679999999988877654 23321 1111 11111111224579
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.+-. ....+..+.+.|+++|+++.+.
T Consensus 234 D~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 234 DVIFDFVG---------------------------TQPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred eEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEC
Confidence 99986311 1346777889999999998754
No 320
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.27 E-value=0.022 Score=48.08 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCccEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.+..|+|+-+|-|++++...-.. ...+|+|+|.+|.+++..++++..|++.. .++.+|-....+ ....|-|
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a----gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~---~~~AdrV 266 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA----GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP---RLRADRV 266 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc----CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc---cccchhe
Confidence 45899999999999998444332 23489999999999999999999997654 666777655433 3567777
Q ss_pred EE
Q 025211 120 VV 121 (256)
Q Consensus 120 i~ 121 (256)
..
T Consensus 267 nL 268 (351)
T KOG1227|consen 267 NL 268 (351)
T ss_pred ee
Confidence 66
No 321
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.05 E-value=0.14 Score=44.83 Aligned_cols=85 Identities=14% Similarity=0.133 Sum_probs=67.1
Q ss_pred cCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCccE
Q 025211 40 EHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 40 ~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~fD~ 118 (256)
+.++.+|+|.+|-.|.-+..++..+. ....++|+|.+.+..+..++.+...|..+ +...+|+.....+..=..+..
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~---n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~~~~~~v~~ 287 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMR---NQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTATPEKFRDVTY 287 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhh---ccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCCcccccceeE
Confidence 35789999999999998888888754 35689999999999999999999888876 666889887522221245788
Q ss_pred EEECCCCCC
Q 025211 119 MVVNPPYVP 127 (256)
Q Consensus 119 Ii~npP~~~ 127 (256)
|+++|+..-
T Consensus 288 iL~DpscSg 296 (413)
T KOG2360|consen 288 ILVDPSCSG 296 (413)
T ss_pred EEeCCCCCC
Confidence 999987643
No 322
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=93.76 E-value=1.1 Score=37.17 Aligned_cols=113 Identities=12% Similarity=0.143 Sum_probs=75.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025211 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
|..-||+-.+ +..+. .++-++.++|+.|.-....+.++. .+-+.++..+|....+... ++++=-+|+.+||
T Consensus 93 l~~YpGSP~l----A~~ll--R~qDRl~l~ELHp~D~~~L~~~f~-~d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPP 165 (279)
T COG2961 93 LRYYPGSPLL----ARQLL--REQDRLVLTELHPSDAPLLRNNFA-GDRRVRVLRGDGFLALKAHLPPKERRGLVLIDPP 165 (279)
T ss_pred cccCCCCHHH----HHHHc--chhceeeeeecCccHHHHHHHHhC-CCcceEEEecCcHHHHhhhCCCCCcceEEEeCCC
Confidence 8889999886 33333 234589999999999999999886 2333488999977665432 2355789999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCCHHHHHHHHHH
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTANDPSQICLQMME 188 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~~~~~~~~~~~ 188 (256)
|-... .++.+++.+.+.++ ++|+..+..|-.. ..++.+.++.
T Consensus 166 fE~~~---------------------eY~rvv~~l~~~~kRf~~g~yaiWYPik~-r~~~~~f~~~ 209 (279)
T COG2961 166 FELKD---------------------EYQRVVEALAEAYKRFATGTYAIWYPIKD-RRQIRRFLRA 209 (279)
T ss_pred ccccc---------------------HHHHHHHHHHHHHHhhcCceEEEEEeecc-hHHHHHHHHH
Confidence 94322 25666666666665 5777777666443 3344444433
No 323
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.68 E-value=0.16 Score=37.43 Aligned_cols=67 Identities=28% Similarity=0.314 Sum_probs=34.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
...+|+|+|.|.-.- .|+.|.+. +..|+++|+++. .+ . . ..+++.-|+.+.....- ...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~---vA~~L~~~--G~dV~~tDi~~~---~a----~-~--g~~~v~DDif~P~l~iY-~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPE---VAKKLKER--GFDVIATDINPR---KA----P-E--GVNFVVDDIFNPNLEIY-EGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--H---HHHHHHHH--S-EEEEE-SS-S--------------STTEE---SSS--HHHH-TTEEEEEE
T ss_pred CCCcEEEECcCCCHH---HHHHHHHc--CCcEEEEECccc---cc----c-c--CcceeeecccCCCHHHh-cCCcEEEE
Confidence 446999999998764 34444432 479999999998 11 1 1 23788888888654421 46899997
Q ss_pred -CCC
Q 025211 122 -NPP 124 (256)
Q Consensus 122 -npP 124 (256)
+||
T Consensus 77 iRPP 80 (127)
T PF03686_consen 77 IRPP 80 (127)
T ss_dssp ES--
T ss_pred eCCC
Confidence 555
No 324
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.52 E-value=0.96 Score=41.77 Aligned_cols=43 Identities=26% Similarity=0.295 Sum_probs=33.9
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+|+=+|||. |..++..++.+ ++.|+++|.+++..+.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~l-----GA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSL-----GAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHC-----CCEEEEEeCCHHHHHHHHH
Confidence 4789999999995 55665666553 4589999999999888776
No 325
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=93.46 E-value=0.11 Score=43.67 Aligned_cols=69 Identities=20% Similarity=0.169 Sum_probs=45.8
Q ss_pred eeccCCccccCCc----hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH
Q 025211 11 VSSHPEVYEPCDD----SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE 84 (256)
Q Consensus 11 ~~~~~~~~~p~~~----~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~ 84 (256)
.++.|++|.=..- +..+++.+.+.+..--...+++|||+|||+|...+.+... ....+...|.+.+.++
T Consensus 81 sDl~p~vyEGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-----~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 81 SDLVPGVYEGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-----GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cccCCceeecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-----ccceeeeEecchhhee
Confidence 3455555543322 6667777665541111357899999999999988777665 1257888888888773
No 326
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=93.43 E-value=2.4 Score=35.53 Aligned_cols=103 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred HHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhh
Q 025211 62 LMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASA 141 (256)
Q Consensus 62 ~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~ 141 (256)
+.|.+.++...|+|+|.++..++.|.+ .|+..... .+ .+.. ..+|+||..-|
T Consensus 3 ~aL~~~g~~~~v~g~d~~~~~~~~a~~----~g~~~~~~-~~-~~~~-----~~~DlvvlavP----------------- 54 (258)
T PF02153_consen 3 LALRKAGPDVEVYGYDRDPETLEAALE----LGIIDEAS-TD-IEAV-----EDADLVVLAVP----------------- 54 (258)
T ss_dssp HHHHHTTTTSEEEEE-SSHHHHHHHHH----TTSSSEEE-SH-HHHG-----GCCSEEEE-S------------------
T ss_pred HHHHhCCCCeEEEEEeCCHHHHHHHHH----CCCeeecc-CC-HhHh-----cCCCEEEEcCC-----------------
Confidence 344444777899999999999887754 23332222 22 1221 35699998655
Q ss_pred hcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHc---CCcEEEEEecCCC
Q 025211 142 WAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEK---GYAARIVVQRSTE 202 (256)
Q Consensus 142 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~ 202 (256)
......+++++...+++|..+.=+.. ....+.+.+.+. +....-.++-.+.
T Consensus 55 -------~~~~~~~l~~~~~~~~~~~iv~Dv~S---vK~~~~~~~~~~~~~~~~~v~~HPM~G~ 108 (258)
T PF02153_consen 55 -------VSAIEDVLEEIAPYLKPGAIVTDVGS---VKAPIVEAMERLLPEGVRFVGGHPMAGP 108 (258)
T ss_dssp -------HHHHHHHHHHHHCGS-TTSEEEE--S----CHHHHHHHHHHHTSSGEEEEEEESCST
T ss_pred -------HHHHHHHHHHhhhhcCCCcEEEEeCC---CCHHHHHHHHHhcCcccceeecCCCCCC
Confidence 23467889999999999987775432 234455555543 3344555554433
No 327
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=93.42 E-value=0.39 Score=38.20 Aligned_cols=116 Identities=21% Similarity=0.255 Sum_probs=60.2
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHH---HHcCC---------cceEE-EcchhhchhhhcCCCccE
Q 025211 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTL---EAHNV---------HADLI-NTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~---~~~~~---------~~~~~-~~d~~~~~~~~~~~~fD~ 118 (256)
|.|.+++.+|..+.+. +.+|+|+|++++.++..++-. .+.++ ..++. ..|..+.. ...|+
T Consensus 7 GlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai-----~~adv 79 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAI-----KDADV 79 (185)
T ss_dssp --STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHH-----HH-SE
T ss_pred CCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhh-----hccce
Confidence 6677777777777643 569999999999887765311 00010 01222 22333321 34688
Q ss_pred EEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe-C-CCCHHHHHHHHHHcC
Q 025211 119 MVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL-T-ANDPSQICLQMMEKG 190 (256)
Q Consensus 119 Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~-~~~~~~~~~~~~~~g 190 (256)
++..- |+.. .+......+...++.+...|+++-.+++-+- . ....+.+..++++.+
T Consensus 80 ~~I~VpTP~~~----------------~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 80 VFICVPTPSDE----------------DGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp EEE----EBET----------------TTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred EEEecCCCccc----------------cCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 87644 3322 1112234578889999999999776666221 1 122234556666654
No 328
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.41 E-value=0.97 Score=39.31 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=57.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|| |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+. ++ ..++.+... ..+.+
T Consensus 168 ~~g~~VlV~G~--G~vG~~aiqlak~--~G~~~Vi~~~~~~~~~~~a~~----lGa~~-vi~~~~~~~~~~~~--~~g~~ 236 (343)
T PRK09880 168 LQGKRVFVSGV--GPIGCLIVAAVKT--LGAAEIVCADVSPRSLSLARE----MGADK-LVNPQNDDLDHYKA--EKGYF 236 (343)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCcEEEEEeCCHHHHHHHHH----cCCcE-EecCCcccHHHHhc--cCCCC
Confidence 36788888876 4555444443332 244 69999999998887765 23321 11 112222111 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... ....+..+.++|++||+++++..
T Consensus 237 D~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 237 DVSFEVSG---------------------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 99986311 12456677789999999998653
No 329
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.34 E-value=1.1 Score=39.88 Aligned_cols=134 Identities=14% Similarity=0.140 Sum_probs=67.3
Q ss_pred CCEEEEecccccHHHHHHHHHh----cc-------cCCCceEEEEeCCHHHHHHHHHHHHHc--------------CCcc
Q 025211 43 PVLCMEVGCGSGYVITSLALML----GQ-------EVPGVQYIATDINPYAVEVTRKTLEAH--------------NVHA 97 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l----~~-------~~~~~~v~giD~~~~~i~~a~~~~~~~--------------~~~~ 97 (256)
..+|+|+|||+|..++.+...+ .+ ..|+.+|+--|+-.+-....=+.+... +...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 5799999999998776654432 11 235678888887654444333322210 0000
Q ss_pred eEEEcchhhchh-hhcCCCccEEEECCCCCCCCCcccccccc-------hhhhcCCCC----------cHHHHHHHHHHH
Q 025211 98 DLINTDIASGLE-KRLAGLVDVMVVNPPYVPTPEDEVGREGI-------ASAWAGGEN----------GRAVIDKILPSA 159 (256)
Q Consensus 98 ~~~~~d~~~~~~-~~~~~~fD~Ii~npP~~~~~~~~~~~~~~-------~~~~~~~~~----------~~~~~~~~l~~~ 159 (256)
-+..+-...+-. -++.++.+++.+..-.+..+......... ...+..... ....+..||+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111111 13457899999866555444311100000 000000000 011345566666
Q ss_pred hhccccCeEEEEEEeCC
Q 025211 160 DKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 160 ~~~LkpgG~l~~~~~~~ 176 (256)
.+-|+|||+++++..+.
T Consensus 224 a~ELvpGG~mvl~~~Gr 240 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGR 240 (386)
T ss_pred HHHhccCcEEEEEEecC
Confidence 77799999999977543
No 330
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.28 E-value=0.85 Score=40.17 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
+++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+. .....+..+.......+.+|
T Consensus 190 ~~g~~VlV~G~--G~vG~~a~~lak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~~~g~d 261 (371)
T cd08281 190 RPGQSVAVVGL--GGVGLSALLGAVA--AGASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELTGGGVD 261 (371)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHhCCCCC
Confidence 46778888876 4455444444332 245 69999999998887754 33321 11112222222222234689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+-.-. ....+....+.|+++|+++++.
T Consensus 262 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 290 (371)
T cd08281 262 YAFEMAG---------------------------SVPALETAYEITRRGGTTVTAG 290 (371)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEc
Confidence 9986311 1245667778999999998754
No 331
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.23 E-value=0.37 Score=41.04 Aligned_cols=102 Identities=18% Similarity=0.240 Sum_probs=64.8
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccc--hhhhcC--C-CCcHHH-HHHHHHHHhhccccCeEEEE
Q 025211 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGI--ASAWAG--G-ENGRAV-IDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~--~~~~~~--~-~~~~~~-~~~~l~~~~~~LkpgG~l~~ 171 (256)
.++++|..+.+....+.++|+++.+|||...-......... ...+.. . ..-.+. ....+.++.++|+++|.+++
T Consensus 18 ~i~~~d~~~~l~~~~~~svDli~tdppy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rvl~~~~~~~v 97 (302)
T COG0863 18 KIYKGDCLEILKSLPENSVDLIFTDPPYNNVKAGRKLGFLKRWLDAWDGWDSRGIYLKFILLQWLAEQKRVLKPGGSLYV 97 (302)
T ss_pred heecchHHHHHhhccccceeEEEcCCCccccccccccccccccchhhhhhhhHHHHHHHHHHHHHHHhhheecCCCEEEE
Confidence 78889998887766667999999999998765411110000 000100 0 000112 45667888999999999999
Q ss_pred EEeCCCCHHHHHHHHHHcCCcE--EEEEecC
Q 025211 172 VTLTANDPSQICLQMMEKGYAA--RIVVQRS 200 (256)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~ 200 (256)
... ......+...+++.||.. ..++.+.
T Consensus 98 ~~~-~~~~~~~~~~~~~~gf~~~~~iiw~k~ 127 (302)
T COG0863 98 IDP-FSNLARIEDIAKKLGFEILGKIIWKKP 127 (302)
T ss_pred ECC-chhhhHHHHHHHhCCCeEeeeEEEeCC
Confidence 654 455667788888888875 3445444
No 332
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.20 E-value=1.2 Score=38.75 Aligned_cols=96 Identities=14% Similarity=0.033 Sum_probs=56.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=+||| .+++.+.+.+.+...+.+|+++|.+++.++.++. .+. .. ..+ +. .. ...+|+|+
T Consensus 162 ~~g~~VlV~G~G--~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~~--~~-~~~--~~-~~--~~g~d~vi 227 (341)
T cd08237 162 KDRNVIGVWGDG--NLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----ADE--TY-LID--DI-PE--DLAVDHAF 227 (341)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cCc--ee-ehh--hh-hh--ccCCcEEE
Confidence 568899999874 4544443333221234589999999988887764 111 11 111 11 11 12489887
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. +. .....+....++|+++|+++++..
T Consensus 228 D~~G--------------------~~----~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 228 ECVG--------------------GR----GSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred ECCC--------------------CC----ccHHHHHHHHHhCcCCcEEEEEee
Confidence 6311 10 013457778889999999988653
No 333
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.13 E-value=3.4 Score=36.75 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=74.3
Q ss_pred cccCCc-hHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCc
Q 025211 18 YEPCDD-SFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVH 96 (256)
Q Consensus 18 ~~p~~~-~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~ 96 (256)
++.++- -+.|.+.+.+.. ....|+=++=.-|.++..++.. .+. ...| +--.-...+.|+.+|+++
T Consensus 25 l~awdaade~ll~~~~~~~------~~~~~~i~nd~fGal~~~l~~~----~~~---~~~d-s~~~~~~~~~n~~~n~~~ 90 (378)
T PRK15001 25 LQAWEAADEYLLQQLDDTE------IRGPVLILNDAFGALSCALAEH----KPY---SIGD-SYISELATRENLRLNGID 90 (378)
T ss_pred ccccccHHHHHHHHHhhcc------cCCCEEEEcCchhHHHHHHHhC----CCC---eeeh-HHHHHHHHHHHHHHcCCC
Confidence 444433 455555554432 1137899999999998877743 231 1123 222335568899999987
Q ss_pred ce-EEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 97 AD-LINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 97 ~~-~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.+ +...+..+.+ ++.+|+|+.-.| +....++..+..+...|.+|+.++.....
T Consensus 91 ~~~~~~~~~~~~~----~~~~d~vl~~~P----------------------K~~~~l~~~l~~l~~~l~~~~~ii~g~~~ 144 (378)
T PRK15001 91 ESSVKFLDSTADY----PQQPGVVLIKVP----------------------KTLALLEQQLRALRKVVTSDTRIIAGAKA 144 (378)
T ss_pred cccceeecccccc----cCCCCEEEEEeC----------------------CCHHHHHHHHHHHHhhCCCCCEEEEEEec
Confidence 53 4444444432 356999998555 22345778889999999999998765443
Q ss_pred CC
Q 025211 176 AN 177 (256)
Q Consensus 176 ~~ 177 (256)
..
T Consensus 145 k~ 146 (378)
T PRK15001 145 RD 146 (378)
T ss_pred CC
Confidence 33
No 334
>KOG3350 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.11 E-value=2.9 Score=32.86 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=62.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcc-cCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQ-EVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~-~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD 117 (256)
+.+.+|.=+.|-+=.+ -+.... ..|.-+|+-+|.+... ...| .+|+.=|...+. +....+.||
T Consensus 72 ~e~~rIacvS~Psly~----y~k~re~~~~~~~v~lfEfDkRF--------e~yg--~eFvfYDyN~p~dlp~~lk~~fd 137 (217)
T KOG3350|consen 72 GEGSRIACVSCPSLYV----YQKKREIEIPHDQVYLFEFDKRF--------ELYG--TEFVFYDYNCPLDLPDELKAHFD 137 (217)
T ss_pred ccCceEEEEeCchHHh----hhhhhhccCCceeEEEEEehhhH--------Hhcc--ceeEEeccCCCCCCHHHHHhccc
Confidence 4566776666655331 222111 1366789999987643 2233 256655655443 333457899
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
+||++|||... .-+.+--..+..+++++-++++++ +....+.+.+.+
T Consensus 138 iivaDPPfL~~---------------------eCl~Kts~tik~L~r~~~kvilCt-Geimee~~s~~l 184 (217)
T KOG3350|consen 138 IIVADPPFLSE---------------------ECLAKTSETIKRLQRNQKKVILCT-GEIMEEWASALL 184 (217)
T ss_pred EEEeCCccccc---------------------hhhhhhHHHHHHHhcCCceEEEec-hhHhHHHHHHHh
Confidence 99999999632 123344555667788888888743 233334444433
No 335
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.03 E-value=0.68 Score=39.37 Aligned_cols=68 Identities=26% Similarity=0.398 Sum_probs=50.6
Q ss_pred CccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc
Q 025211 16 EVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH 93 (256)
Q Consensus 16 ~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~ 93 (256)
....|..-...+.+.++... ..++..|||+-+|+|..++++... +-.++|+|++++-++.+.+++...
T Consensus 200 ~~~hp~~~P~~l~~r~i~~~----s~~~diVlDpf~GsGtt~~aa~~~------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 200 KKLHPAQKPLALIERLIRDY----SFPGDIVLDPFAGSGTTGIAAKNL------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred ccCCCCCChHHHHHHHHHhc----CCCCCEEeecCCCCChHHHHHHHc------CCceEEEecCHHHHHHHHHHHHhh
Confidence 34455444566666655543 368999999999999987765554 337999999999999999988754
No 336
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.90 E-value=0.029 Score=42.78 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=50.2
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCC
Q 025211 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPY 125 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~ 125 (256)
.+-||||.=.+ .|+|..+-++..++ ++...+. .....+.+.+.|+|++...+
T Consensus 6 kv~ig~G~~r~-----------npgWi~~d~ed~~~-vdlvc~A----------------s~e~~F~dns~d~iyaeHvl 57 (185)
T COG4627 6 KVKIGAGGKRV-----------NPGWIITDVEDRPE-VDLVCRA----------------SNESMFEDNSVDAIYAEHVL 57 (185)
T ss_pred EEEEecccccc-----------CCCceeeehhcccc-cchhhhh----------------hhhccCCCcchHHHHHHHHH
Confidence 46678887653 67888877766552 2322111 11123446788988773221
Q ss_pred CCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 126 VPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
-+ .. .+--..+++.|++.|||||++-+..|..
T Consensus 58 EH------------lt-------~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 58 EH------------LT-------YDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred HH------------Hh-------HHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 10 00 0113467899999999999999877644
No 337
>COG4889 Predicted helicase [General function prediction only]
Probab=92.54 E-value=0.67 Score=45.11 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=81.4
Q ss_pred ccccCCchHHHHHHHHHhhccc--------ccCCCCEEEEecccccHHHHHHHHH------hcccCCCceEEEEeCCHHH
Q 025211 17 VYEPCDDSFALVDALLADRINL--------VEHHPVLCMEVGCGSGYVITSLALM------LGQEVPGVQYIATDINPYA 82 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~--------~~~~~~~VLDlGcG~G~~~~~l~~~------l~~~~~~~~v~giD~~~~~ 82 (256)
||+| -..++.|+..-..+ ....+.+|||+.+|||.+-.-+... |.+++.+ .+++.||---+
T Consensus 816 VyTP----iEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~-eLhA~eIvLLs 890 (1518)
T COG4889 816 VYTP----IEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQK-ELHAFEIVLLS 890 (1518)
T ss_pred eecc----hhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHh-hhhHHHHHHHH
Confidence 7888 45555554443322 2346789999999999985444332 1223333 57777776666
Q ss_pred HHHHHHHHHHc-----C-Ccc--eEEEcchhhchh-----------------hhcCCCccEEEECCCCCCCCCcccc---
Q 025211 83 VEVTRKTLEAH-----N-VHA--DLINTDIASGLE-----------------KRLAGLVDVMVVNPPYVPTPEDEVG--- 134 (256)
Q Consensus 83 i~~a~~~~~~~-----~-~~~--~~~~~d~~~~~~-----------------~~~~~~fD~Ii~npP~~~~~~~~~~--- 134 (256)
+-.|.-|+... | .++ .+...|-++... ....-++-+|+.||||..-...+..
T Consensus 891 YYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gqks~ndnn~ 970 (1518)
T COG4889 891 YYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQKSENDNNQ 970 (1518)
T ss_pred HHHHHhhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccccCcCcccc
Confidence 65565555431 2 111 233333322221 1112347899999999764443211
Q ss_pred ---cccchh----hhcC-----CCC-cHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 135 ---REGIAS----AWAG-----GEN-GRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 135 ---~~~~~~----~~~~-----~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
++..+. .+.. ..+ -.+.+.+.++-....++.+|++-|+..+
T Consensus 971 nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~Ng 1024 (1518)
T COG4889 971 NLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNG 1024 (1518)
T ss_pred ccccchHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecC
Confidence 111111 1111 111 1123334455567889999999998753
No 338
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=92.32 E-value=1 Score=39.41 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=59.6
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.|..++.+++.+ ++++++++.+++..+.+++. .|.+ .++.. ++.+........
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~-----G~~Vi~~~~~~~k~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 227 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLH-----GCYVVGSAGSSQKVDLLKNK---LGFD-EAFNYKEEPDLDAALKRYFPE 227 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHc-----CCEEEEEcCCHHHHHHHHHh---cCCC-EEEECCCcccHHHHHHHHCCC
Confidence 57889988887 3566666666652 56899999988877766532 2433 22221 232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++-.- + ...+..+.+.|+++|+++++.
T Consensus 228 gvD~v~d~v------------------------G----~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 228 GIDIYFDNV------------------------G----GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred CcEEEEECC------------------------C----HHHHHHHHHHhccCCEEEEEC
Confidence 689998631 1 235677788999999998754
No 339
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=91.78 E-value=1.5 Score=36.46 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=61.0
Q ss_pred EEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhh--cCCCccEEEECCC
Q 025211 47 MEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKR--LAGLVDVMVVNPP 124 (256)
Q Consensus 47 LDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~fD~Ii~npP 124 (256)
+..-.|+-.++ ..+. .++-+.+.+|+.+.-.+..++++... -...++..|..+.+... ...+=-+|+++||
T Consensus 62 l~~YPGSP~ia----~~ll--R~qDrl~l~ELHp~d~~~L~~~~~~~-~~v~v~~~DG~~~l~allPP~~rRglVLIDPp 134 (245)
T PF04378_consen 62 LRFYPGSPAIA----ARLL--REQDRLVLFELHPQDFEALKKNFRRD-RRVRVHHRDGYEGLKALLPPPERRGLVLIDPP 134 (245)
T ss_dssp --EEE-HHHHH----HHHS---TTSEEEEE--SHHHHHHHTTS--TT-S-EEEE-S-HHHHHHHH-S-TTS-EEEEE---
T ss_pred cCcCCCCHHHH----HHhC--CccceEEEEecCchHHHHHHHHhccC-CccEEEeCchhhhhhhhCCCCCCCeEEEECCC
Confidence 55666666653 2222 23558999999999999998887642 23489999988765432 1355689999999
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc--cCeEEEEEEeCCCC--HHHHHHHHHHcCCc
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS--KRGWLYLVTLTAND--PSQICLQMMEKGYA 192 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk--pgG~l~~~~~~~~~--~~~~~~~~~~~g~~ 192 (256)
|=...+ +..++..+...+| +.|++++..|-... .+.+.+.+++.+..
T Consensus 135 YE~~~d---------------------y~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~~~~~ 185 (245)
T PF04378_consen 135 YEQKDD---------------------YQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKALGIK 185 (245)
T ss_dssp --STTH---------------------HHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHHH-SS
T ss_pred CCCchH---------------------HHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHhcCCC
Confidence 943322 4555655555555 57887776764432 22344455555543
No 340
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=91.77 E-value=4 Score=35.24 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.9
Q ss_pred CCEEEEecc--cccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCCc
Q 025211 43 PVLCMEVGC--GSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGLV 116 (256)
Q Consensus 43 ~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~f 116 (256)
+.+||=.|+ |.|..++.+++.+ ++ .|++++.+++..+.+++. .|.+ .++. .++.+.........+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~-----G~~~Vi~~~~s~~~~~~~~~~---lGa~-~vi~~~~~~~~~~i~~~~~~gv 225 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLL-----GCSRVVGICGSDEKCQLLKSE---LGFD-AAINYKTDNVAERLRELCPEGV 225 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHHHh---cCCc-EEEECCCCCHHHHHHHHCCCCc
Confidence 378888775 4566666666652 45 799999988877766553 2433 2222 233332222223469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+..-. ...+..+.+.|+++|+++.+.
T Consensus 226 d~vid~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 226 DVYFDNVG----------------------------GEISDTVISQMNENSHIILCG 254 (345)
T ss_pred eEEEECCC----------------------------cHHHHHHHHHhccCCEEEEEe
Confidence 99986311 122467788999999998754
No 341
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=91.68 E-value=0.82 Score=40.49 Aligned_cols=124 Identities=17% Similarity=0.252 Sum_probs=65.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH---HcCCcc---eEE-EcchhhchhhhcCCCc
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE---AHNVHA---DLI-NTDIASGLEKRLAGLV 116 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~---~~~~~~---~~~-~~d~~~~~~~~~~~~f 116 (256)
.+|-=+ |-|.+++.+|.+.+++ +..|+|+||++..++....--. +..+.. ..+ .+.+.....+..-...
T Consensus 10 ~~I~Vi--GLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~ 85 (436)
T COG0677 10 ATIGVI--GLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKEC 85 (436)
T ss_pred eEEEEE--ccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccC
Confidence 444444 5566777777776543 5689999999999987543110 000000 011 1111111111111356
Q ss_pred cEEEEC-C-CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE--eCCCCHHHHHHHHHH
Q 025211 117 DVMVVN-P-PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT--LTANDPSQICLQMME 188 (256)
Q Consensus 117 D~Ii~n-p-P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~--~~~~~~~~~~~~~~~ 188 (256)
|+++.. | |+.. +++++ +....+..+.+...|++|-.+++-+ ++... +++...+.+
T Consensus 86 dv~iI~VPTPl~~-------~~~pD---------ls~v~~aa~sIa~~L~kG~LVIlEST~~PGTT-e~v~~plle 144 (436)
T COG0677 86 DVFIICVPTPLKK-------YREPD---------LSYVESAARSIAPVLKKGDLVILESTTPPGTT-EEVVKPLLE 144 (436)
T ss_pred CEEEEEecCCcCC-------CCCCC---------hHHHHHHHHHHHHhcCCCCEEEEecCCCCCcH-HHHHHHHHh
Confidence 776653 3 3222 12222 3457888999999999999888843 22333 444444444
No 342
>PLN02494 adenosylhomocysteinase
Probab=91.42 E-value=3.9 Score=37.39 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=55.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+| .++..+++.+. .-+++|+++|.++.....+.. .+. .+ .++.+.. ...|+|+
T Consensus 252 LaGKtVvViGyG--~IGr~vA~~ak--a~Ga~VIV~e~dp~r~~eA~~----~G~--~v--v~leEal-----~~ADVVI 314 (477)
T PLN02494 252 IAGKVAVICGYG--DVGKGCAAAMK--AAGARVIVTEIDPICALQALM----EGY--QV--LTLEDVV-----SEADIFV 314 (477)
T ss_pred cCCCEEEEECCC--HHHHHHHHHHH--HCCCEEEEEeCCchhhHHHHh----cCC--ee--ccHHHHH-----hhCCEEE
Confidence 368999999888 45555666554 336789999999865433322 122 11 1332321 3579998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+...- ..-+.......+|+||+++.+..
T Consensus 315 ~tTGt--------------------------~~vI~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 315 TTTGN--------------------------KDIIMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred ECCCC--------------------------ccchHHHHHhcCCCCCEEEEcCC
Confidence 84320 11223667778999999998654
No 343
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.42 E-value=4.1 Score=35.13 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+.. .++. |++++.+++..+.+++ .+.+ .++...- .+...... ...+
T Consensus 162 ~~g~~vlV~G~--G~vG~~~~~~ak~--~G~~~vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 232 (339)
T cd08239 162 SGRDTVLVVGA--GPVGLGALMLARA--LGAEDVIGVDPSPERLELAKA----LGAD-FVINSGQDDVQEIRELTSGAGA 232 (339)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCCC-EEEcCCcchHHHHHHHhCCCCC
Confidence 46788888875 5565555554443 2456 9999999888777654 2332 2221110 11111111 2369
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-... -...+....+.|+++|+++++..
T Consensus 233 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 233 DVAIECSG---------------------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 99986321 12345666788999999987543
No 344
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.35 E-value=2.7 Score=34.53 Aligned_cols=98 Identities=22% Similarity=0.264 Sum_probs=57.3
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCcc
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~fD 117 (256)
.++.+||-.|+|+ |...+.+++. .+.++++++.+++..+.+++. +... .....+..........+.+|
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~-----~g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~d 203 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKA-----AGARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELRLTGGGGAD 203 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHHHhcCCCCC
Confidence 4678999999886 4444444433 246899999998877766442 2111 11111111111011235699
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++.+-. ....+..+.+.|+++|+++.+..
T Consensus 204 ~vi~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 204 VVIDAVG---------------------------GPETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEEECCC---------------------------CHHHHHHHHHhcccCCEEEEEcc
Confidence 9987422 11346667788999999987653
No 345
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=91.34 E-value=0.46 Score=39.56 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 26 ALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 26 ~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+|.+.++. .+..+++|+.||+|.+++.+.. +...++.-|+++..+...+.
T Consensus 7 ~l~~~I~~~ip~---~~~~~~vepF~G~g~V~~~~~~------~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 7 KLAKWIIELIPK---NKHKTYVEPFAGGGSVFLNLKQ------PGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---------SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCCCEEEEEecchhHHHHHhcc------cccceeeeechHHHHHHHHH
Confidence 456777777642 1789999999999998655443 24489999999988776653
No 346
>PRK08643 acetoin reductase; Validated
Probab=91.25 E-value=6.7 Score=32.20 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=52.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~ 115 (256)
+++|=.| |+|.++..+++.+.++ +++|+.++-+++..+.+...+...+....++..|+.+... .. ..++
T Consensus 3 k~~lItG-as~giG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVED--GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5666666 5566777788877654 5689999988877766666555444334667777765421 10 1256
Q ss_pred ccEEEECCCCC
Q 025211 116 VDVMVVNPPYV 126 (256)
Q Consensus 116 fD~Ii~npP~~ 126 (256)
+|.+|.|-.+.
T Consensus 80 id~vi~~ag~~ 90 (256)
T PRK08643 80 LNVVVNNAGVA 90 (256)
T ss_pred CCEEEECCCCC
Confidence 89999987543
No 347
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=91.24 E-value=2.3 Score=37.26 Aligned_cols=98 Identities=19% Similarity=0.145 Sum_probs=57.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcC-CC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLA-GL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~-~~ 115 (256)
.++.+||=.|+ |.++..+.+.... .++ .|+++|.+++..+.+++ .|.+ .++ ..+..+....... ..
T Consensus 175 ~~g~~VlV~G~--g~vG~~a~~~ak~--~G~~~Vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~i~~~~~~~g 245 (358)
T TIGR03451 175 KRGDSVAVIGC--GGVGDAAIAGAAL--AGASKIIAVDIDDRKLEWARE----FGAT-HTVNSSGTDPVEAIRALTGGFG 245 (358)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcCCCcCHHHHHHHHhCCCC
Confidence 46788998876 4454444443332 245 49999999988887754 3332 222 1222222222212 35
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|+|+-.-- -...+..+.+.|++||+++++..
T Consensus 246 ~d~vid~~g---------------------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 246 ADVVIDAVG---------------------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEECC
Confidence 899876210 12346667779999999988643
No 348
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=91.10 E-value=7.1 Score=32.09 Aligned_cols=81 Identities=21% Similarity=0.215 Sum_probs=52.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ ++.++.++-++...+.+...+...+....++..|+.+... . . .-
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~--G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATA--GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4688999994 555666777776643 5688889988777766555554333334566777664421 0 0 12
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+..+
T Consensus 87 ~~~d~li~~ag~ 98 (255)
T PRK06113 87 GKVDILVNNAGG 98 (255)
T ss_pred CCCCEEEECCCC
Confidence 568999998754
No 349
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.01 E-value=2.8 Score=35.25 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=56.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEE-cchhhchhhh-cCCCcc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLIN-TDIASGLEKR-LAGLVD 117 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~-~d~~~~~~~~-~~~~fD 117 (256)
.++.+||=.|+ |.++..+++.+.. .++. |+++|.+++..+.+++ .+.+. ++. .+..+..... ....+|
T Consensus 119 ~~g~~VlV~G~--G~vG~~~~~~ak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~~-~i~~~~~~~~~~~~~~~~g~d 189 (280)
T TIGR03366 119 LKGRRVLVVGA--GMLGLTAAAAAAA--AGAARVVAADPSPDRRELALS----FGATA-LAEPEVLAERQGGLQNGRGVD 189 (280)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----cCCcE-ecCchhhHHHHHHHhCCCCCC
Confidence 46788888876 4455555444332 2444 8999999888777665 23321 111 1111111111 123589
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++-.-. ....+..+.+.|+++|+++++.
T Consensus 190 ~vid~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 190 VALEFSG---------------------------ATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EEEECCC---------------------------ChHHHHHHHHHhcCCCEEEEec
Confidence 9976311 1345777788999999999865
No 350
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=90.94 E-value=0.91 Score=40.93 Aligned_cols=142 Identities=13% Similarity=0.061 Sum_probs=78.9
Q ss_pred HHHHHHHHHhhcc-cccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEE
Q 025211 25 FALVDALLADRIN-LVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLIN 101 (256)
Q Consensus 25 ~~l~~~l~~~~~~-~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~ 101 (256)
...+-.+..++.. .+...+..+.|+|.|.|.-.-.+... -+ ...-.++.||-+..|.+....+... +-.+ .++.
T Consensus 182 Ya~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~l-wr-~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~~g~~~v~ 258 (491)
T KOG2539|consen 182 YALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLL-WR-QTKREYSLVDRSRAMLKQSEKNLRD-GSHIGEPIVR 258 (491)
T ss_pred hHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhh-cc-cccceeEeeccchHHHHHHHHhhcC-hhhcCchhcc
Confidence 3444445555543 33456788999998877643323332 11 1124699999999999888777653 1111 1111
Q ss_pred c-chhhchhhh-cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH
Q 025211 102 T-DIASGLEKR-LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP 179 (256)
Q Consensus 102 ~-d~~~~~~~~-~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 179 (256)
. .+.....+. ....||+|++..-.++..+. ..-.+....-+.....+||.++++..+....
T Consensus 259 ~~~~~r~~~pi~~~~~yDlvi~ah~l~~~~s~-----------------~~R~~v~~s~~r~~~r~g~~lViIe~g~~~g 321 (491)
T KOG2539|consen 259 KLVFHRQRLPIDIKNGYDLVICAHKLHELGSK-----------------FSRLDVPESLWRKTDRSGYFLVIIEKGTTMG 321 (491)
T ss_pred ccchhcccCCCCcccceeeEEeeeeeeccCCc-----------------hhhhhhhHHHHHhccCCCceEEEEecCCccc
Confidence 1 222222222 23459999995443332221 1112333445667889999999998876655
Q ss_pred HHHHHHH
Q 025211 180 SQICLQM 186 (256)
Q Consensus 180 ~~~~~~~ 186 (256)
-+.....
T Consensus 322 ~e~l~ea 328 (491)
T KOG2539|consen 322 LELLTEA 328 (491)
T ss_pred hhhHHHH
Confidence 4443333
No 351
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=90.68 E-value=1.8 Score=37.13 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=51.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
++.+||=+||| .+++.+.+.+.. . ++ .|.++|.+++.++.+... . ++ |..+. ....+|+|+
T Consensus 144 ~~~~vlV~G~G--~vG~~a~q~ak~-~-G~~~v~~~~~~~~rl~~a~~~----~----~i--~~~~~----~~~g~Dvvi 205 (308)
T TIGR01202 144 KVLPDLIVGHG--TLGRLLARLTKA-A-GGSPPAVWETNPRRRDGATGY----E----VL--DPEKD----PRRDYRAIY 205 (308)
T ss_pred CCCcEEEECCC--HHHHHHHHHHHH-c-CCceEEEeCCCHHHHHhhhhc----c----cc--Chhhc----cCCCCCEEE
Confidence 46678877764 444444443332 2 34 477889888777665431 1 11 11110 124689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
-.-. -...+..+.++|+++|+++++..
T Consensus 206 d~~G---------------------------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 206 DASG---------------------------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ECCC---------------------------CHHHHHHHHHhhhcCcEEEEEee
Confidence 7411 13456777889999999998653
No 352
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.53 E-value=7.6 Score=31.54 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=53.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
..+++|=.|+ +|.++..+++.+.++ ++.|++++-++...+...+.+...+....++.+|+.+... ... -
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKA--GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567888884 677788888887654 5689999998876665555444333334677788765421 100 1
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
++.|+++.+.-+.
T Consensus 82 ~~id~lv~~ag~~ 94 (241)
T PRK07454 82 GCPDVLINNAGMA 94 (241)
T ss_pred CCCCEEEECCCcc
Confidence 4689999887543
No 353
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=90.47 E-value=4.9 Score=36.76 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|+=+|+|. ++..+++.+. ..+++|+.+|.++.....+.. .|. . ..++.+.. ...|+|+
T Consensus 252 LaGKtVgVIG~G~--IGr~vA~rL~--a~Ga~ViV~e~dp~~a~~A~~----~G~--~--~~~leell-----~~ADIVI 314 (476)
T PTZ00075 252 IAGKTVVVCGYGD--VGKGCAQALR--GFGARVVVTEIDPICALQAAM----EGY--Q--VVTLEDVV-----ETADIFV 314 (476)
T ss_pred cCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEeCCchhHHHHHh----cCc--e--eccHHHHH-----hcCCEEE
Confidence 4789999999885 6666777765 346789999998775433322 122 1 12333321 4689999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHH-HHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKIL-PSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
+... ...++ ......+|||++++-+... ..+.....+...+
T Consensus 315 ~atG---------------------------t~~iI~~e~~~~MKpGAiLINvGr~--d~Ei~i~aL~~~~ 356 (476)
T PTZ00075 315 TATG---------------------------NKDIITLEHMRRMKNNAIVGNIGHF--DNEIQVAELEAYP 356 (476)
T ss_pred ECCC---------------------------cccccCHHHHhccCCCcEEEEcCCC--chHHhHHHHHhcC
Confidence 8521 12334 3567789999999986543 2233334455443
No 354
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=90.42 E-value=1 Score=34.30 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=28.2
Q ss_pred Eeccccc--HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH--HHHcC
Q 025211 48 EVGCGSG--YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT--LEAHN 94 (256)
Q Consensus 48 DlGcG~G--~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~--~~~~~ 94 (256)
|+|+..| .....+... ...++..|+++|.+|..++..+.+ +..+.
T Consensus 1 DvGA~~G~~~~~~~~~~~--~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~ 49 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEK--KCGPGGRVHAFEPNPSNFEKLKRNLNLALND 49 (167)
T ss_dssp EES-TTS--HHHHHHHHH--HTS--SEEEEE---HHHHHHHHHH--HHHTT
T ss_pred CcccCCChhHHHHHHHHH--HcCCCCEEEEEECCHHHHHHHhHHHHHHhcC
Confidence 8999999 544433211 125678999999999999999999 66663
No 355
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.34 E-value=7.3 Score=31.51 Aligned_cols=125 Identities=16% Similarity=0.098 Sum_probs=67.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|++ |.++..+++.+.++ ++.|++++-+++..+.+.+.+...+ ...++..|+.+... .. .-
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKE--GAQVCINSRNENKLKRMKKTLSKYG-NIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45788888885 66677777776643 6689999998877665544443322 23666777664321 00 01
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+.+|.++.+..-......... ......+.... .....+++.+.+.++++|.++++..
T Consensus 80 ~~id~ii~~ag~~~~~~~~~~-~~~~~~~~~n~---~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 80 NAIDGLVVTVGGYVEDTVEEF-SGLEEMLTNHI---KIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCCEEEEcCCCcCCCchHHH-HHHHHHHHHhc---hHHHHHHHHHHHHHhcCCEEEEEec
Confidence 457989887643221110000 00000010000 0122345566667778888777553
No 356
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.33 E-value=7.6 Score=32.63 Aligned_cols=82 Identities=12% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.||=.|++ ++.++.++++.+.+. +++|+.++.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQ--GAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 46788888887 356788888887654 568888888754333333332322322 456677665421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025211 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 81 ~g~iDilVnnAG~~ 94 (274)
T PRK08415 81 LGKIDFIVHSVAFA 94 (274)
T ss_pred cCCCCEEEECCccC
Confidence 26799999987653
No 357
>PLN02740 Alcohol dehydrogenase-like
Probab=90.20 E-value=1.7 Score=38.49 Aligned_cols=97 Identities=22% Similarity=0.184 Sum_probs=58.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.+ .++.. ++.+.......+
T Consensus 197 ~~g~~VlV~G~--G~vG~~a~q~ak~--~G~~~Vi~~~~~~~r~~~a~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 267 (381)
T PLN02740 197 QAGSSVAIFGL--GAVGLAVAEGARA--RGASKIIGVDINPEKFEKGKE----MGIT-DFINPKDSDKPVHERIREMTGG 267 (381)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--CCCCcEEEEcCChHHHHHHHH----cCCc-EEEecccccchHHHHHHHHhCC
Confidence 56789998876 5555555554432 245 69999999988887754 3433 22221 122222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- -...+......+++| |+++++.
T Consensus 268 g~dvvid~~G---------------------------~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 268 GVDYSFECAG---------------------------NVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhhcCCCEEEEEc
Confidence 6999986311 124566777788887 9987754
No 358
>PRK06128 oxidoreductase; Provisional
Probab=90.19 E-value=3.5 Score=35.10 Aligned_cols=126 Identities=10% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHH--HHHHHHHHHHHcCCcceEEEcchhhchh--hh------
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPY--AVEVTRKTLEAHNVHADLINTDIASGLE--KR------ 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~--~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------ 111 (256)
.+++||=.|+ +|.++..+++.+.++ ++.|+.+..+.+ ..+...+.+...+....++.+|+.+... ..
T Consensus 54 ~~k~vlITGa-s~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 54 QGRKALITGA-DSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCCEEEEecC-CCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578888884 666677788877654 557777665432 2233333333334344667777765321 10
Q ss_pred cCCCccEEEECCCCCCCCC--cccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 112 LAGLVDVMVVNPPYVPTPE--DEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.-+.+|++|.|.-+..... .+....+....+... ..-.-.+++.+.+.++++|+++++.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N---~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTN---VYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHH---hHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 1247899999875432111 010000111111000 0012245566677778888887754
No 359
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=90.01 E-value=3.7 Score=35.84 Aligned_cols=96 Identities=18% Similarity=0.224 Sum_probs=54.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeC---CHHHHHHHHHHHHHcCCcc-eEEEcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDI---NPYAVEVTRKTLEAHNVHA-DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~---~~~~i~~a~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+| .++..+.+.+.. .++.|++++. ++...+.+++ .|... .....+..+ . . ....+
T Consensus 171 ~~g~~vlI~G~G--~vG~~a~q~ak~--~G~~vi~~~~~~~~~~~~~~~~~----~Ga~~v~~~~~~~~~-~-~-~~~~~ 239 (355)
T cd08230 171 WNPRRALVLGAG--PIGLLAALLLRL--RGFEVYVLNRRDPPDPKADIVEE----LGATYVNSSKTPVAE-V-K-LVGEF 239 (355)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHH----cCCEEecCCccchhh-h-h-hcCCC
Confidence 467889888864 444444443332 2458999986 5666666553 33321 000111111 1 1 12468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+|+-.-. ....+....+.|+++|+++++..
T Consensus 240 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 240 DLIIEATG---------------------------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CEEEECcC---------------------------CHHHHHHHHHHccCCcEEEEEec
Confidence 98887311 12457778889999999987543
No 360
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.94 E-value=4.2 Score=34.76 Aligned_cols=95 Identities=12% Similarity=0.123 Sum_probs=58.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 115 (256)
.++.+||=.|. |.|..++.+++. .++.+++++.+++..+.+++ .|.+ .++. .++.+.........
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~-----~G~~vi~~~~s~~~~~~l~~----~Ga~-~vi~~~~~~~~~~v~~~~~~g 211 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKI-----KGCKVIGCAGSDDKVAWLKE----LGFD-AVFNYKTVSLEEALKEAAPDG 211 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeCCCccHHHHHHHHCCCC
Confidence 46778877764 455666666665 25689999988887777654 3432 2222 23322222222346
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+|+-.- -...+....+.|+++|+++.+.
T Consensus 212 vd~vld~~----------------------------g~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 212 IDCYFDNV----------------------------GGEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred cEEEEECC----------------------------CHHHHHHHHHhhccCCEEEEEc
Confidence 89887621 0244677788999999998753
No 361
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=89.91 E-value=5 Score=34.44 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=57.1
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~ 114 (256)
.++.+||=.|. |.|..++.+++. .++++++++.+++..+.+++ .|.+ .++.. +..+........
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~-----~G~~Vi~~~~s~~~~~~~~~----lGa~-~vi~~~~~~~~~~~~~~~~~~ 206 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKL-----KGCKVVGAAGSDEKVAYLKK----LGFD-VAFNYKTVKSLEETLKKASPD 206 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHH----cCCC-EEEeccccccHHHHHHHhCCC
Confidence 46788887774 355555555554 35689999999887777643 3433 22221 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-.-. ...+....++|+++|+++.+.
T Consensus 207 gvdvv~d~~G----------------------------~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 207 GYDCYFDNVG----------------------------GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred CeEEEEECCC----------------------------HHHHHHHHHHhCcCcEEEEec
Confidence 6899976311 123567788999999999754
No 362
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.83 E-value=6.9 Score=32.39 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|+ +|.++..+++.+.++ +++|+.++.+++..+...+.+ +....++.+|+.+... .. .-
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVAA--GARVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 4577887774 556777788877654 568999998876554433322 2233667777765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|..+.
T Consensus 79 g~id~lv~~ag~~ 91 (261)
T PRK08265 79 GRVDILVNLACTY 91 (261)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987543
No 363
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=89.64 E-value=10 Score=34.24 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=55.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+|. ++..+++.+.. -+++|+.+|.++.....+.. .|. ++ .++.+. -..+|+|+
T Consensus 210 l~Gk~VlViG~G~--IG~~vA~~lr~--~Ga~ViV~d~dp~ra~~A~~----~G~--~v--~~l~ea-----l~~aDVVI 272 (425)
T PRK05476 210 IAGKVVVVAGYGD--VGKGCAQRLRG--LGARVIVTEVDPICALQAAM----DGF--RV--MTMEEA-----AELGDIFV 272 (425)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHh--CCCEEEEEcCCchhhHHHHh----cCC--Ee--cCHHHH-----HhCCCEEE
Confidence 3689999999874 55556665543 36689999999876443322 132 21 122222 13689998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~ 174 (256)
.... ...++. .....+|+|++++.+..
T Consensus 273 ~aTG---------------------------~~~vI~~~~~~~mK~GailiNvG~ 300 (425)
T PRK05476 273 TATG---------------------------NKDVITAEHMEAMKDGAILANIGH 300 (425)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCCEEEEcCC
Confidence 7421 123454 56778999999988654
No 364
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=89.64 E-value=2.1 Score=33.61 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=42.4
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEeCCCCHHHH-HHHHHHcCCcE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTLTANDPSQI-CLQMMEKGYAA 193 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~g~~~ 193 (256)
||+|+++||+........+ .....+.... .+.+.+ .+.+++.++|.+++-.. .....+. .+.|.+.||+.
T Consensus 1 fdvI~~DPPW~~~~~~~~~---~~~~~Y~tm~----~~~i~~Lpv~~l~~~~~~lflWvT-n~~~~~~~~~l~~~WGf~~ 72 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG---GAEAHYPTMS----LDEIKSLPVPQLAAPGALLFLWVT-NSQLPEAKLELFPAWGFEY 72 (176)
T ss_pred CCEEEEeCCCCCcCccccc---ccccCCCccC----HHHHHhCCHHHhCCCCcEEEEEec-cchhhHHHHHHHHhCCCEE
Confidence 7999999999876654332 0111111111 223322 35677888888888543 3334455 88899999875
Q ss_pred E
Q 025211 194 R 194 (256)
Q Consensus 194 ~ 194 (256)
+
T Consensus 73 ~ 73 (176)
T PF05063_consen 73 V 73 (176)
T ss_pred E
Confidence 3
No 365
>KOG4174 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.51 E-value=3.2 Score=34.52 Aligned_cols=143 Identities=17% Similarity=0.062 Sum_probs=80.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH------HHHHHHH---HcCCcceEEEcchhhchh--h
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE------VTRKTLE---AHNVHADLINTDIASGLE--K 110 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~------~a~~~~~---~~~~~~~~~~~d~~~~~~--~ 110 (256)
...+||.+|=|.=.++..++..+++. ...++++.++..-.+ -++.|+. .+|.. -++..|+..... .
T Consensus 56 ~~~~ill~gEgdFSfs~sl~~~~g~s--a~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~-I~h~Vdv~sl~~~~~ 132 (282)
T KOG4174|consen 56 KKQKILLVGEGDFSFSLSLAPHFGRS--AGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT-ILHGVDVTSLKFHAD 132 (282)
T ss_pred ccccEEEecccchhhHHHHHHHhCcc--ccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc-eEecccceeEEeccc
Confidence 45789999999999888888887643 235666655544322 2344443 23332 233334443322 3
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc-cCeEEEEEEeC-CCCH-HHHHHHHH
Q 025211 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS-KRGWLYLVTLT-ANDP-SQICLQMM 187 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~l~~~~~~-~~~~-~~~~~~~~ 187 (256)
+.-++||-||.|.|+.-..-. ++.+.-... ...+....+++.+..+|+ ..|.+.+.... .... -.+....+
T Consensus 133 ~~~~~~d~IiFNFPH~G~g~~----~e~d~~~i~--~~qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik~Lak 206 (282)
T KOG4174|consen 133 LRLQRYDNIIFNFPHSGKGIK----FEQDRNIIP--LHQKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIKFLAK 206 (282)
T ss_pred ccccccceEEEcCCCCCCCcc----cccchHHHH--HHHHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhhHhhh
Confidence 334789999999887432211 111111000 123456788999999999 78998885432 2222 23444444
Q ss_pred HcCCcE
Q 025211 188 EKGYAA 193 (256)
Q Consensus 188 ~~g~~~ 193 (256)
+.|+..
T Consensus 207 ~~gl~L 212 (282)
T KOG4174|consen 207 EFGLTL 212 (282)
T ss_pred hccccc
Confidence 555553
No 366
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.34 E-value=5.2 Score=33.99 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=69.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|+=+| .|.++-.+++.+.+++....+++.|.+....+.+.+ .++..+........ .....|+|+..-
T Consensus 4 ~~v~IvG--~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~----lgv~d~~~~~~~~~-----~~~~aD~Vivav 72 (279)
T COG0287 4 MKVGIVG--LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALE----LGVIDELTVAGLAE-----AAAEADLVIVAV 72 (279)
T ss_pred cEEEEEC--CchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhh----cCcccccccchhhh-----hcccCCEEEEec
Confidence 4455555 666777778888777777788999999888776543 12221211111011 124689999866
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCc
Q 025211 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYA 192 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~ 192 (256)
|. .....+++++...|++|-.+.= ..+....+.+.+.++.-.
T Consensus 73 Pi------------------------~~~~~~l~~l~~~l~~g~iv~D---v~S~K~~v~~a~~~~~~~ 114 (279)
T COG0287 73 PI------------------------EATEEVLKELAPHLKKGAIVTD---VGSVKSSVVEAMEKYLPG 114 (279)
T ss_pred cH------------------------HHHHHHHHHhcccCCCCCEEEe---cccccHHHHHHHHHhccC
Confidence 63 2367888888888899877663 233456677777776533
No 367
>PLN02827 Alcohol dehydrogenase-like
Probab=89.25 E-value=2.4 Score=37.50 Aligned_cols=97 Identities=25% Similarity=0.193 Sum_probs=56.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+... ++ .|+++|.+++..+.+++ .|.+ .++.. +..........+
T Consensus 192 ~~g~~VlV~G~--G~vG~~~iqlak~~--G~~~vi~~~~~~~~~~~a~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 262 (378)
T PLN02827 192 SKGSSVVIFGL--GTVGLSVAQGAKLR--GASQIIGVDINPEKAEKAKT----FGVT-DFINPNDLSEPIQQVIKRMTGG 262 (378)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEECCCHHHHHHHHH----cCCc-EEEcccccchHHHHHHHHHhCC
Confidence 46889998875 45555554443322 34 58999999887777644 3433 22211 222222222223
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~ 173 (256)
.+|+|+-.-- ....+..+.+.|++| |+++++.
T Consensus 263 g~d~vid~~G---------------------------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 263 GADYSFECVG---------------------------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhhccCCCEEEEEC
Confidence 6899986311 123466777889998 9998754
No 368
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=89.16 E-value=5.3 Score=35.76 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCCCEEEEecc-c-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHH
Q 025211 41 HHPVLCMEVGC-G-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKT 89 (256)
Q Consensus 41 ~~~~~VLDlGc-G-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~ 89 (256)
+++.+|+=+|+ | .|..++.+++.++ .....|+++|.+++.++.+++.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G--~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGP--IGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcc--cCCceEEEEcCCHHHHHHHHHh
Confidence 46778887863 3 5555555555421 0113799999999999988774
No 369
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.09 E-value=9.5 Score=31.30 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|=.|++ |.++.++++.+.++ +++|+.++.+++..+...+.+...+....++..|+.+... .. .-
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEA--GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56888888865 45567777777654 5689999998887776666655444333566777654321 10 11
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|....
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 5799999987554
No 370
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=89.08 E-value=1.8 Score=35.49 Aligned_cols=118 Identities=22% Similarity=0.280 Sum_probs=65.8
Q ss_pred ccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-cCCcceEEEcchhhchh---------hhcCCCccE
Q 025211 50 GCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-HNVHADLINTDIASGLE---------KRLAGLVDV 118 (256)
Q Consensus 50 GcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-~~~~~~~~~~d~~~~~~---------~~~~~~fD~ 118 (256)
|+| ++.++..+++.+.+. +++|+.++.+++..+..-+.+.. .+ .+++..|+.+... ....+++|+
T Consensus 1 g~~~s~GiG~aia~~l~~~--Ga~V~~~~~~~~~~~~~~~~l~~~~~--~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEE--GANVILTDRNEEKLADALEELAKEYG--AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHT--TEEEEEEESSHHHHHHHHHHHHHHTT--SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHC--CCEEEEEeCChHHHHHHHHHHHHHcC--CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 455 456677788877654 67999999999976444444333 33 3468888754321 111278999
Q ss_pred EEECCCCCCCC---Cc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTP---ED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+|.|..+.... .+ +....+-...+.. .......+.+.+.++++++|.++++..
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~gsii~iss 134 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEEDWDKTFDI---NVFSPFLLAQAALPLMKKGGSIINISS 134 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHHHHHHHHHH---HTHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHHHHHHHHHH---HHHHHHHHHHHHHHHHhhCCCcccccc
Confidence 99876544331 10 0000000101100 011233456667778999999888653
No 371
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=89.03 E-value=3.6 Score=35.58 Aligned_cols=96 Identities=15% Similarity=0.203 Sum_probs=58.2
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCC
Q 025211 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.|..++.+++. .++++++++.+++..+.+++. .|.+ .++. .+..+........
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~-----~G~~Vi~~~~~~~~~~~~~~~---lGa~-~vi~~~~~~~~~~~i~~~~~~ 220 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKL-----KGCYVVGSAGSDEKVDLLKNK---LGFD-DAFNYKEEPDLDAALKRYFPN 220 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHH-----cCCEEEEEeCCHHHHHHHHHh---cCCc-eeEEcCCcccHHHHHHHhCCC
Confidence 57788988876 345555555554 356899999888877776653 2332 2222 1232222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+|+-... ...+..+.+.|+++|+++.+.
T Consensus 221 gvd~v~d~~g----------------------------~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 221 GIDIYFDNVG----------------------------GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CcEEEEECCC----------------------------HHHHHHHHHHhccCcEEEEec
Confidence 6899876310 244677788999999998754
No 372
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.79 E-value=2.6 Score=36.71 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=30.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
.++.+||=.|+ |.++..+.+.+.. .++.++++|.+++..+.+++
T Consensus 165 ~~g~~VlV~G~--G~vG~~a~~~a~~--~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 165 KKGDLVIVIGA--GGVGGYMVQTAKA--MGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCeEEEEcCCHHHHHHHHH
Confidence 56889999998 4444444433332 24589999999998887754
No 373
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=88.61 E-value=4.6 Score=37.06 Aligned_cols=125 Identities=11% Similarity=0.155 Sum_probs=64.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH---cCCcceE----------EEcchhhchhhh
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA---HNVHADL----------INTDIASGLEKR 111 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~---~~~~~~~----------~~~d~~~~~~~~ 111 (256)
+|.=+ |.|.++..++..+...+.+.+|+++|++++.++..++.... .++. ++ ...|..+.
T Consensus 3 ~I~Vi--G~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~-ell~~~~~~~l~~t~~~~~~---- 75 (473)
T PLN02353 3 KICCI--GAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLD-EVVKQCRGKNLFFSTDVEKH---- 75 (473)
T ss_pred EEEEE--CCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHH-HHHHHhhcCCEEEEcCHHHH----
Confidence 34445 45555555666666555567899999999998876543210 1111 11 11111111
Q ss_pred cCCCccEEEECC--CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE-eCCCCHHHHHHHHHH
Q 025211 112 LAGLVDVMVVNP--PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT-LTANDPSQICLQMME 188 (256)
Q Consensus 112 ~~~~fD~Ii~np--P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~-~~~~~~~~~~~~~~~ 188 (256)
-...|+|+..- |........ .....+.......+.+.+.|++|-.+++-+ ......+.+...+.+
T Consensus 76 -i~~advi~I~V~TP~~~~g~~~-----------~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 76 -VAEADIVFVSVNTPTKTRGLGA-----------GKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred -HhcCCEEEEEeCCCCCCCCCcC-----------CCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 13468876532 432110000 001123457788889999998866655422 223334566666665
No 374
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=88.56 E-value=5.3 Score=30.99 Aligned_cols=135 Identities=17% Similarity=0.137 Sum_probs=68.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHH-HHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEV-TRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~-a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+++++=+|+..-.+-..+.+ ...+.|..+|.++--++. .+.++. .+...|+..-... ..++||.+.|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~-----~GA~~iltveyn~L~i~~~~~dr~s------si~p~df~~~~~~-y~~~fD~~as 69 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQ-----HGAAKILTVEYNKLEIQEEFRDRLS------SILPVDFAKNWQK-YAGSFDFAAS 69 (177)
T ss_pred CceEEEEecCCchhhHHHHH-----cCCceEEEEeecccccCcccccccc------cccHHHHHHHHHH-hhccchhhhe
Confidence 46777777775554332222 334579999987644321 111110 3333344333222 2477999887
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCH---------HHHHHHHHHcCCc
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDP---------SQICLQMMEKGYA 192 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---------~~~~~~~~~~g~~ 192 (256)
-...-+..=. .+-++.. +.| -...+..+..+||+||.+++..|-.... ..++-.+.-.||+
T Consensus 70 ~~siEh~GLG--RYGDPid-----p~G---dl~~m~~i~~vLK~GG~L~l~vPvG~d~i~fNahRiYg~~rL~mm~~gfe 139 (177)
T PF03269_consen 70 FSSIEHFGLG--RYGDPID-----PIG---DLRAMAKIKCVLKPGGLLFLGVPVGTDAIQFNAHRIYGPIRLAMMFYGFE 139 (177)
T ss_pred echhcccccc--ccCCCCC-----ccc---cHHHHHHHHHhhccCCeEEEEeecCCcceEEecceeecHhHHHHHhCCcE
Confidence 3222110000 0000000 011 2456778889999999999977644321 2334444456777
Q ss_pred EEEEEec
Q 025211 193 ARIVVQR 199 (256)
Q Consensus 193 ~~~~~~~ 199 (256)
+...+..
T Consensus 140 ~i~tfs~ 146 (177)
T PF03269_consen 140 WIDTFSG 146 (177)
T ss_pred EEeeecc
Confidence 7665543
No 375
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=88.55 E-value=8.5 Score=32.70 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=29.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+|.=+|+| .++..++..+.. .+..|+.+|.+++.++.+++.+.
T Consensus 4 ~~I~ViGaG--~mG~~iA~~la~--~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 4 KVIGVVGSG--VMGQGIAQVFAR--TGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred cEEEEECcc--HHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHH
Confidence 456666665 444445555543 25689999999999987766544
No 376
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.47 E-value=12 Score=30.43 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=62.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
.+++||=.|+ +|.++..+++.+.+. +.+|++++-+. ...+.....+...+....++.+|+.+... ...
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4578888885 455666777776543 56788877653 23333333333333333667777665421 111
Q ss_pred CCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 113 AGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|+++.|......... .....+.. .......+++.+.+.++.+|+++++.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~-----~~~~~~~v---n~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 82 FGGLDALVLNASGGMESGM-----DEDYAMRL---NRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCCcEEEECCCCCCCCCC-----CcceeeEe---eeHHHHHHHHHHHhhccCCceEEEEe
Confidence 1468999987643221110 00000000 01123455666777766677776654
No 377
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=88.44 E-value=4.5 Score=28.31 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=35.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
++|| +.||+|.-+-. +++..++.+..++++.++...++.+.... ...+|+|+.-|
T Consensus 4 ~~IL-l~C~~G~sSS~----------------------l~~k~~~~~~~~gi~~~v~a~~~~~~~~~--~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSL----------------------LVNKMNKAAEEYGVPVKIAAGSYGAAGEK--LDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHH----------------------HHHHHHHHHHHCCCcEEEEEecHHHHHhh--cCCCCEEEECc
Confidence 5666 78999964321 22344555566788777777777665322 24689999976
Q ss_pred C
Q 025211 124 P 124 (256)
Q Consensus 124 P 124 (256)
.
T Consensus 59 q 59 (95)
T TIGR00853 59 Q 59 (95)
T ss_pred h
Confidence 5
No 378
>PRK07985 oxidoreductase; Provisional
Probab=88.43 E-value=5.2 Score=33.96 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=48.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|+ +|.++..+++.+.++ +++|+.++.+ .+..+...+.+...+....++..|+.+... ..
T Consensus 48 ~~k~vlITGa-s~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 48 KDRKALVTGG-DSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578998885 566777788877754 5678877643 333444444444334334566777765311 00
Q ss_pred cCCCccEEEECCCC
Q 025211 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+.+|+++.|..+
T Consensus 125 ~~g~id~lv~~Ag~ 138 (294)
T PRK07985 125 ALGGLDIMALVAGK 138 (294)
T ss_pred HhCCCCEEEECCCC
Confidence 12568999987654
No 379
>PRK06701 short chain dehydrogenase; Provisional
Probab=88.24 E-value=7.5 Score=32.93 Aligned_cols=126 Identities=13% Similarity=0.180 Sum_probs=65.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCH-HHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINP-YAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------ 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~-~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------ 112 (256)
++++||=.|+ +|.++..+++.+.++ +++|+.++.++ ...+.....+...+....++..|+.+... ...
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~ 121 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRE 121 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888875 555677777777654 56888887764 23333334444334344677777654321 111
Q ss_pred CCCccEEEECCCCCCCCCc--ccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 113 AGLVDVMVVNPPYVPTPED--EVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 113 ~~~fD~Ii~npP~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
-+.+|++|.+..+...... +....+....+.. .......+++.+.+.++++|.++++.
T Consensus 122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~---N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKT---NIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhh---hhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1468999987654321110 0000000011100 01113344556666677778877755
No 380
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=88.23 E-value=5.1 Score=36.06 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=56.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
.++++|+=+|+|. ++..+++.+. ..+++|+.+|.++...+.|+. .|. ... +..+.. ..+|+|+
T Consensus 200 l~GktVvViG~G~--IG~~va~~ak--~~Ga~ViV~d~d~~R~~~A~~----~G~--~~~--~~~e~v-----~~aDVVI 262 (413)
T cd00401 200 IAGKVAVVAGYGD--VGKGCAQSLR--GQGARVIVTEVDPICALQAAM----EGY--EVM--TMEEAV-----KEGDIFV 262 (413)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHH--HCCCEEEEEECChhhHHHHHh----cCC--EEc--cHHHHH-----cCCCEEE
Confidence 4789999999985 3333444443 235689999999987776654 233 111 222211 3579998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHH-HhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPS-ADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~LkpgG~l~~~~~ 174 (256)
.... ...++.. ..+.+++||+++.+..
T Consensus 263 ~atG---------------------------~~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 263 TTTG---------------------------NKDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCcEEEEeCC
Confidence 7421 1234544 4789999999988654
No 381
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.07 E-value=14 Score=30.61 Aligned_cols=83 Identities=13% Similarity=0.071 Sum_probs=50.7
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-- 111 (256)
-.++.+|=.|+++ +.++.++++.+.+. +++|+.++.++...+.+++.....+ ...++..|+.+... ..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRAL--GAELAVTYLNDKARPYVEPLAEELD-APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEEeCChhhHHHHHHHHHhhc-cceEEecCcCCHHHHHHHHHHHHH
Confidence 3578999999887 47888888887754 5688888887654333333222222 12355666554321 11
Q ss_pred cCCCccEEEECCCCC
Q 025211 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 85 ~~g~ld~lv~nAg~~ 99 (258)
T PRK07533 85 EWGRLDFLLHSIAFA 99 (258)
T ss_pred HcCCCCEEEEcCccC
Confidence 126799999987543
No 382
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.04 E-value=8 Score=32.80 Aligned_cols=110 Identities=18% Similarity=0.240 Sum_probs=61.1
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc---CCcc-------------eE-EEcchhhc
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH---NVHA-------------DL-INTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~---~~~~-------------~~-~~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+.+. +..|+.+|.+++.++.+.+.+... +... .+ ...+..+.
T Consensus 3 ~V~VIG~--G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 78 (288)
T PRK09260 3 KLVVVGA--GVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA 78 (288)
T ss_pred EEEEECc--cHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence 4555555 55555566665533 558999999999998877653321 1100 01 11122111
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-...|+|+..-|- .......++.++.+.++++.++...+.+ -....+.+.+
T Consensus 79 -----~~~aD~Vi~avpe----------------------~~~~k~~~~~~l~~~~~~~~il~~~tSt-~~~~~l~~~~ 129 (288)
T PRK09260 79 -----VADADLVIEAVPE----------------------KLELKKAVFETADAHAPAECYIATNTST-MSPTEIASFT 129 (288)
T ss_pred -----hcCCCEEEEeccC----------------------CHHHHHHHHHHHHhhCCCCcEEEEcCCC-CCHHHHHhhc
Confidence 2457999975441 1233456777788888887766554333 3344444444
No 383
>PRK07102 short chain dehydrogenase; Provisional
Probab=88.01 E-value=13 Score=30.25 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=50.3
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhchh--hh---cCCCcc
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASGLE--KR---LAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~~~--~~---~~~~fD 117 (256)
++|+=.| |+|.++..+++.+.++ +++|++++.++...+...+.+...+ ....++..|+.+... .. ....+|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAA--GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCC
Confidence 4677677 5577788888887754 5689999998876655544443322 233677788765421 11 123579
Q ss_pred EEEECCCC
Q 025211 118 VMVVNPPY 125 (256)
Q Consensus 118 ~Ii~npP~ 125 (256)
+++.+..+
T Consensus 79 ~vv~~ag~ 86 (243)
T PRK07102 79 IVLIAVGT 86 (243)
T ss_pred EEEECCcC
Confidence 99987654
No 384
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.90 E-value=1.7 Score=38.35 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
+-+.|+|+|.|-|.++.-++.. -+..|.|||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~-----y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLG-----YGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhc-----cCceEEEeccchHHHHHHHH
Confidence 5589999999999976555543 46799999999777766654
No 385
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.87 E-value=7.3 Score=33.67 Aligned_cols=92 Identities=13% Similarity=0.027 Sum_probs=53.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
+++.+||=.|+| .++..+.+.... .++.+++++.+++..+.+++ .|.+ .++.. .+. ..+.+|+++
T Consensus 164 ~~g~~VlV~G~g--~iG~~a~~~a~~--~G~~vi~~~~~~~~~~~a~~----~Ga~-~vi~~--~~~----~~~~~d~~i 228 (329)
T TIGR02822 164 PPGGRLGLYGFG--GSAHLTAQVALA--QGATVHVMTRGAAARRLALA----LGAA-SAGGA--YDT----PPEPLDAAI 228 (329)
T ss_pred CCCCEEEEEcCC--HHHHHHHHHHHH--CCCeEEEEeCChHHHHHHHH----hCCc-eeccc--ccc----CcccceEEE
Confidence 578899988864 333333333221 35689999999888777665 3432 22211 111 123578765
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
..-. ....+....+.|+++|+++++-.
T Consensus 229 ~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 229 LFAP---------------------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ECCC---------------------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 4211 12457777889999999988653
No 386
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=87.70 E-value=6.8 Score=33.75 Aligned_cols=96 Identities=23% Similarity=0.305 Sum_probs=54.7
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCC-ceEEEEeCCHHHHHHHHHHHHHcCCcceEE---Ecchhhchhhh-cCC
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPG-VQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKR-LAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~-~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~-~~~ 114 (256)
.++.+||-.|+| .|..++.+++.+ + ..+++++.++...+.+++. +.. .++ ..++.+..... ...
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~-----g~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~i~~~~~~~ 235 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLL-----GAARIIAVDSNPERLDLAKEA----GAT-DIINPKNGDIVEQILELTGGR 235 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHHHh----CCc-EEEcCCcchHHHHHHHHcCCC
Confidence 467888887654 345555555542 3 2788888888777665542 322 222 12222222221 125
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
.+|+++..-. -...+....+.|+++|+++...
T Consensus 236 ~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 236 GVDCVIEAVG---------------------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred CCcEEEEccC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 6999986311 1245777788999999988653
No 387
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.66 E-value=17 Score=31.20 Aligned_cols=82 Identities=15% Similarity=0.074 Sum_probs=53.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhchh------hh--
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~~------~~-- 111 (256)
.+++++=.|++ |.++.++++.|.++ +++|+.+.-+++..+.+.+.+.... ....++..|+.+... ..
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~--G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~ 89 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAA--GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRA 89 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 56778877775 55677788877654 5789998888777666655554322 233677778765421 11
Q ss_pred cCCCccEEEECCCCC
Q 025211 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
..+++|++|.|.-..
T Consensus 90 ~~~~iD~li~nAG~~ 104 (313)
T PRK05854 90 EGRPIHLLINNAGVM 104 (313)
T ss_pred hCCCccEEEECCccc
Confidence 125689999987543
No 388
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.55 E-value=15 Score=30.41 Aligned_cols=81 Identities=16% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCH---HHHHHHHHHHHHcCCcceEEEcchhhchh------hh
Q 025211 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINP---YAVEVTRKTLEAHNVHADLINTDIASGLE------KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~---~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~ 111 (256)
.++.+|=.|.++ +.++.++++.+.++ +++|+.++.+. +.++...+.+ .+....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~Dv~d~~~v~~~~~~~ 81 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTL--EGQESLLLPCDVTSDEEITACFETI 81 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHc--CCCceEEEecCCCCHHHHHHHHHHH
Confidence 568899999884 77888889988754 56788776442 3333332221 12223566677654421 11
Q ss_pred --cCCCccEEEECCCCC
Q 025211 112 --LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 82 ~~~~g~ld~lv~nag~~ 98 (257)
T PRK08594 82 KEEVGVIHGVAHCIAFA 98 (257)
T ss_pred HHhCCCccEEEECcccC
Confidence 126799999887543
No 389
>PLN02253 xanthoxin dehydrogenase
Probab=87.55 E-value=10 Score=31.59 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=50.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.++++|=.| |+|.++.++++.+.++ +++|+.++.++...+...+.+. .+....++..|+.+... ... -
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~--G~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKH--GAKVCIVDLQDDLGQNVCDSLG-GEPNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhc-CCCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 467788777 5567788888877654 5789999988766554443332 12223677777765421 101 1
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 93 g~id~li~~Ag~ 104 (280)
T PLN02253 93 GTLDIMVNNAGL 104 (280)
T ss_pred CCCCEEEECCCc
Confidence 578999987643
No 390
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.49 E-value=1.4 Score=37.97 Aligned_cols=99 Identities=21% Similarity=0.171 Sum_probs=59.9
Q ss_pred CCCCEEEEecc-cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEE---EcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGC-GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLI---NTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGc-G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~---~~d~~~~~~~~~~~~f 116 (256)
.++++|-=+|. |-|.+++.+++.+ +.+|+++|-+...-+.+-+ ..|.+.-+. ..|..+......+.-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAM-----G~rV~vis~~~~kkeea~~---~LGAd~fv~~~~d~d~~~~~~~~~dg~~ 251 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAM-----GMRVTVISTSSKKKEEAIK---SLGADVFVDSTEDPDIMKAIMKTTDGGI 251 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHh-----CcEEEEEeCCchhHHHHHH---hcCcceeEEecCCHHHHHHHHHhhcCcc
Confidence 36777776665 4788999999875 4689999998755454433 344443111 2333333322223344
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
|-+..- ....++.+..+||++|.++++.-+.
T Consensus 252 ~~v~~~-----------------------------a~~~~~~~~~~lk~~Gt~V~vg~p~ 282 (360)
T KOG0023|consen 252 DTVSNL-----------------------------AEHALEPLLGLLKVNGTLVLVGLPE 282 (360)
T ss_pred eeeeec-----------------------------cccchHHHHHHhhcCCEEEEEeCcC
Confidence 444320 1344677788999999999876433
No 391
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=87.48 E-value=14 Score=31.05 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=61.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC----cceEEEcchhhchh-hhcC---
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV----HADLINTDIASGLE-KRLA--- 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~----~~~~~~~d~~~~~~-~~~~--- 113 (256)
....|+.+|||-=.-. ..+.. .++..++=+|. |+.++.-++.+...+. ...++..|+.+... ....
T Consensus 81 g~~qvV~LGaGlDTr~----~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gf 154 (260)
T TIGR00027 81 GIRQVVILGAGLDTRA----YRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGF 154 (260)
T ss_pred CCcEEEEeCCccccHH----HhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCC
Confidence 3568999999988742 33331 12455655554 5566666666665442 12677777763221 1111
Q ss_pred --CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 114 --GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 114 --~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+..-++++-..+...+. .....++..+.+...||+.+++-..
T Consensus 155 d~~~ptl~i~EGvl~YL~~-------------------~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 155 DPTAPTAWLWEGLLMYLTE-------------------EAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCeeeeecchhhcCCH-------------------HHHHHHHHHHHHhCCCCcEEEEEec
Confidence 22335554332222111 2367888888888889999988543
No 392
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.46 E-value=12 Score=31.05 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=47.2
Q ss_pred CCCEEEEeccccc-HHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 42 HPVLCMEVGCGSG-YVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G-~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++.| .++.++++.+.++ ++.|+..+.++...+.+++.....+.. .++..|+.+... .. .
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~~r~~~~~~~~~~l~~~~g~~-~~~~~Dv~~~~~v~~~~~~~~~~ 83 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKH--GAELWFTYQSEVLEKRVKPLAEEIGCN-FVSELDVTNPKSISNLFDDIKEK 83 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEEeCchHHHHHHHHHHHhcCCc-eEEEccCCCHHHHHHHHHHHHHH
Confidence 4577888888764 4777777776643 568888877643323333332222211 345667654321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025211 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 84 ~g~iDilVnnag~~ 97 (260)
T PRK06603 84 WGSFDFLLHGMAFA 97 (260)
T ss_pred cCCccEEEEccccC
Confidence 26799999987543
No 393
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=87.43 E-value=3.8 Score=35.59 Aligned_cols=99 Identities=17% Similarity=0.181 Sum_probs=62.4
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCC-C
Q 025211 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAG-L 115 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~-~ 115 (256)
+++.+||=.|. |.|.+++.+++.+ ++.++++--+++-.+.+++ .|.+. +....|+.+...+...+ .
T Consensus 141 ~~g~~VLV~gaaGgVG~~aiQlAk~~-----G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~g 211 (326)
T COG0604 141 KPGETVLVHGAAGGVGSAAIQLAKAL-----GATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKG 211 (326)
T ss_pred CCCCEEEEecCCchHHHHHHHHHHHc-----CCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCC
Confidence 56889998885 4567777777764 2356666666655554443 34332 34445565555444333 6
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCC
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTA 176 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 176 (256)
+|+|+..- =...+......|+++|+++.+....
T Consensus 212 vDvv~D~v----------------------------G~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 212 VDVVLDTV----------------------------GGDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred ceEEEECC----------------------------CHHHHHHHHHHhccCCEEEEEecCC
Confidence 99998731 1355666788899999999866533
No 394
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=87.24 E-value=0.29 Score=35.19 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.3
Q ss_pred HHHHHHHHhhccccCeEEEEE
Q 025211 152 IDKILPSADKLLSKRGWLYLV 172 (256)
Q Consensus 152 ~~~~l~~~~~~LkpgG~l~~~ 172 (256)
+..++..+.+.|+|||++++-
T Consensus 23 l~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 23 LKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHhhCCCCEEEEe
Confidence 678999999999999999993
No 395
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=87.22 E-value=4.1 Score=35.82 Aligned_cols=99 Identities=18% Similarity=0.086 Sum_probs=56.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE----cchhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN----TDIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~----~d~~~~~~~~~~~~ 115 (256)
+++.+||=.|+| .++..+.+.... -++ .|+++|.+++..+.+++ .|.+..+.. .++.+.......+.
T Consensus 184 ~~g~~VlV~G~G--~iG~~a~q~Ak~--~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g 255 (368)
T TIGR02818 184 EEGDTVAVFGLG--GIGLSVIQGARM--AKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGG 255 (368)
T ss_pred CCCCEEEEECCC--HHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCC
Confidence 467888888864 444433333221 244 79999999998887754 243221111 11222222222236
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
+|+++-.-. -...+..+.+.++++ |+++++..
T Consensus 256 ~d~vid~~G---------------------------~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 256 VDYSFECIG---------------------------NVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCCeEEEEec
Confidence 899876311 124566777788886 99887653
No 396
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=87.20 E-value=11 Score=35.28 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=44.8
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025211 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
||.|.++..+++.+.++ +..++.+|.+++.++.+++. ...++.+|..+.. ....-++.|.+++
T Consensus 423 ~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 67777777888887654 45799999999988877642 3478899987653 2222357897765
No 397
>COG4121 Uncharacterized conserved protein [Function unknown]
Probab=87.13 E-value=9.7 Score=31.79 Aligned_cols=133 Identities=14% Similarity=0.261 Sum_probs=82.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccC--------CCceEEEEeCCHHHHHHHHH-------------------------
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEV--------PGVQYIATDINPYAVEVTRK------------------------- 88 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~--------~~~~v~giD~~~~~i~~a~~------------------------- 88 (256)
+.-.|+|+|-|+|...+.+.+...+.. ..-.+++++.+|.....+..
T Consensus 58 ~~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~ 137 (252)
T COG4121 58 EILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGC 137 (252)
T ss_pred cceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchh
Confidence 567899999999998777666533221 13458888877654332221
Q ss_pred -HHHHcCCc-ceEEEcchhhchhhhcCC--CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccc
Q 025211 89 -TLEAHNVH-ADLINTDIASGLEKRLAG--LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLS 164 (256)
Q Consensus 89 -~~~~~~~~-~~~~~~d~~~~~~~~~~~--~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk 164 (256)
.+...+.. ..+..+|+.+.++..... .+|+.+.+- |.+. +.+. .| .+.++..+.+..+
T Consensus 138 ~r~~~~g~~~l~l~~gd~~~~~p~~~~~~~~~dAwflDg-FsP~-------kNP~-mW---------~~e~l~~~a~~~~ 199 (252)
T COG4121 138 AAAVRHGLLLLGLVIGDAGDGIPPVPRRRPGTDAWFLDG-FRPV-------KNPE-MW---------EDELLNLMARIPY 199 (252)
T ss_pred HHhhhcchheeeeeeeehhhcCCcccccccCccEEecCC-cccc-------CChh-hc---------cHHHHHHHHhhcC
Confidence 11111111 167777877766553221 688887642 1111 1111 12 5788999999999
Q ss_pred cCeEEEEEEeCCCCHHHHHHHHHHcCCcEEEE
Q 025211 165 KRGWLYLVTLTANDPSQICLQMMEKGYAARIV 196 (256)
Q Consensus 165 pgG~l~~~~~~~~~~~~~~~~~~~~g~~~~~~ 196 (256)
+||.+.- +.....+++-+...||.....
T Consensus 200 ~~~~l~t----~ssA~~vRr~L~~aGF~v~~r 227 (252)
T COG4121 200 RDPTLAT----FAAAIAVRRRLEQAGFTVEKR 227 (252)
T ss_pred CCCceec----hHHHHHHHHHHHHcCceeeec
Confidence 9999875 445677899999999986443
No 398
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=87.12 E-value=8.1 Score=36.66 Aligned_cols=64 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC
Q 025211 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN 122 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n 122 (256)
||.|.++..+++.+.+. +..++.+|.|++.++.+++. ...++.+|..+.. ....-++.|++++.
T Consensus 406 ~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 406 VGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKY------GYKVYYGDATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred ecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhC------CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence 67778888888887643 55899999999999887652 2378889987653 22223578888873
No 399
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=87.00 E-value=5.8 Score=28.85 Aligned_cols=64 Identities=23% Similarity=0.171 Sum_probs=44.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
..++|+|+|.|-=.- +++.|.++ +..++++|+++.. +. ...++...|+.+..... =...|+|.+
T Consensus 13 ~~gkVvEVGiG~~~~---VA~~L~e~--g~dv~atDI~~~~---a~-------~g~~~v~DDitnP~~~i-Y~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLD---VAKRLAER--GFDVLATDINEKT---AP-------EGLRFVVDDITNPNISI-YEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHH---HHHHHHHc--CCcEEEEeccccc---Cc-------ccceEEEccCCCccHHH-hhCccceee
Confidence 346999999886553 56666654 4789999999871 11 12378888988875442 145799987
No 400
>PRK08267 short chain dehydrogenase; Provisional
Probab=86.56 E-value=12 Score=30.69 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=49.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---cCC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR---LAG 114 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~---~~~ 114 (256)
++||=.|++ |.++..+++.+.++ +++|++++-+++.++.....+. +....++.+|+.+... .. ..+
T Consensus 2 k~vlItGas-g~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITGAA-SGIGRATALLFAAE--GWRVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeCCC-chHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456666654 56677788877654 5789999988877665544332 2233677777765321 11 035
Q ss_pred CccEEEECCCCC
Q 025211 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
++|+++.+.-..
T Consensus 77 ~id~vi~~ag~~ 88 (260)
T PRK08267 77 RLDVLFNNAGIL 88 (260)
T ss_pred CCCEEEECCCCC
Confidence 789999876543
No 401
>PRK09072 short chain dehydrogenase; Provisional
Probab=86.47 E-value=16 Score=30.17 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=50.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc-----CC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL-----AG 114 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~-----~~ 114 (256)
++++||=.|++ |.++..+++.+.++ ++.|++++.+++..+.....+ ..+....++..|+.+... ... .+
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 79 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAA--GARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMG 79 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcC
Confidence 35667777765 45566677776644 578999999887776655444 222233677777765421 100 25
Q ss_pred CccEEEECCCCC
Q 025211 115 LVDVMVVNPPYV 126 (256)
Q Consensus 115 ~fD~Ii~npP~~ 126 (256)
.+|.++.+..+.
T Consensus 80 ~id~lv~~ag~~ 91 (263)
T PRK09072 80 GINVLINNAGVN 91 (263)
T ss_pred CCCEEEECCCCC
Confidence 689999986543
No 402
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=86.44 E-value=9.6 Score=32.77 Aligned_cols=93 Identities=22% Similarity=0.254 Sum_probs=54.5
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEcc---hhhchhhhcCCCc
Q 025211 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINTD---IASGLEKRLAGLV 116 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~f 116 (256)
++.+||-.|+|. |..++.+++.+ +. .+++++.++...+.+++. +.+ .++..+ +... .. ....+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-----G~~~v~~~~~s~~~~~~~~~~----g~~-~vi~~~~~~~~~~-~~-~~~~v 232 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-----GAAEIVATDLADAPLAVARAM----GAD-ETVNLARDPLAAY-AA-DKGDF 232 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHHc----CCC-EEEcCCchhhhhh-hc-cCCCc
Confidence 678888887653 44444444432 44 689999988877755442 322 222111 1111 11 12358
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++.... ....++...+.|+++|+++.+.
T Consensus 233 d~vld~~g---------------------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 233 DVVFEASG---------------------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred cEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 99987311 1234677788999999998754
No 403
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=86.21 E-value=6.5 Score=28.07 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=23.5
Q ss_pred HHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025211 85 VTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
..++.++.+|++.++...+..+.........+|+|++.|
T Consensus 20 k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~P 58 (104)
T PRK09590 20 KTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSP 58 (104)
T ss_pred HHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEECh
Confidence 334455567777677777766543221234689999964
No 404
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.12 E-value=17 Score=30.33 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=49.0
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++. +.++.++++.+.+. +++|+.++.++...+..++.....+.. ..+..|+.+... .. .
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~~~~~~g~~-~~~~~Dv~d~~~v~~~~~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFTYQGEALGKRVKPLAESLGSD-FVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEecCchHHHHHHHHHHHhcCCc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 467889899876 36777788887754 568888887654333333332222321 355667654321 10 1
Q ss_pred CCCccEEEECCCC
Q 025211 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
-+++|++|.|.-.
T Consensus 83 ~g~iD~lVnnAG~ 95 (271)
T PRK06505 83 WGKLDFVVHAIGF 95 (271)
T ss_pred hCCCCEEEECCcc
Confidence 2679999998754
No 405
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.11 E-value=20 Score=31.19 Aligned_cols=139 Identities=14% Similarity=0.096 Sum_probs=74.4
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCcc-----eEE-Ecchhhchhh
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVHA-----DLI-NTDIASGLEK 110 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~~-----~~~-~~d~~~~~~~ 110 (256)
++|-=+|+| .++..++..+. ..+..|+..|.+++.++.++..+.. .++.. .+. ..++.+.
T Consensus 8 ~~VaVIGaG--~MG~giA~~~a--~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~a--- 80 (321)
T PRK07066 8 KTFAAIGSG--VIGSGWVARAL--AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEAC--- 80 (321)
T ss_pred CEEEEECcC--HHHHHHHHHHH--hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHH---
Confidence 567777766 33333444433 2477999999999988776665432 12110 111 1122111
Q ss_pred hcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025211 111 RLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 111 ~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
-...|+|+-+-| ...+....++.++.+.++|+-++...+. .-...++...+ .
T Consensus 81 --v~~aDlViEavp----------------------E~l~vK~~lf~~l~~~~~~~aIlaSnTS-~l~~s~la~~~---~ 132 (321)
T PRK07066 81 --VADADFIQESAP----------------------EREALKLELHERISRAAKPDAIIASSTS-GLLPTDFYARA---T 132 (321)
T ss_pred --hcCCCEEEECCc----------------------CCHHHHHHHHHHHHHhCCCCeEEEECCC-ccCHHHHHHhc---C
Confidence 146799988654 1244567888999999999875554333 22233444433 2
Q ss_pred CcEEEEEecCCC-CccEEEEEEEecCcc
Q 025211 191 YAARIVVQRSTE-EENLHIIKFWRDFDI 217 (256)
Q Consensus 191 ~~~~~~~~~~~~-~~~~~l~~~~~~~~~ 217 (256)
-....+...... ...+-+++.......
T Consensus 133 ~p~R~~g~HffnP~~~~pLVEVv~g~~T 160 (321)
T PRK07066 133 HPERCVVGHPFNPVYLLPLVEVLGGERT 160 (321)
T ss_pred CcccEEEEecCCccccCceEEEeCCCCC
Confidence 223333333332 333456666655544
No 406
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.07 E-value=20 Score=30.53 Aligned_cols=96 Identities=18% Similarity=0.187 Sum_probs=57.0
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-cc--------eE-EEcchhh
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~-~~--------~~-~~~d~~~ 106 (256)
.+|-=+|+| ..+..++..+. ..+..|+..|.+++.++.+++.+... +. .. ++ ...|...
T Consensus 6 ~~V~ViGaG--~mG~~iA~~~a--~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~ 81 (286)
T PRK07819 6 QRVGVVGAG--QMGAGIAEVCA--RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD 81 (286)
T ss_pred cEEEEEccc--HHHHHHHHHHH--hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH
Confidence 467777776 33333444443 23679999999999998877665432 11 00 11 1222211
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhcc-ccCeEEEE
Q 025211 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLL-SKRGWLYL 171 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L-kpgG~l~~ 171 (256)
-...|+|+-.-| ...+....++..+..++ +|+.++.-
T Consensus 82 ------~~~~d~ViEav~----------------------E~~~~K~~l~~~l~~~~~~~~~il~s 119 (286)
T PRK07819 82 ------FADRQLVIEAVV----------------------EDEAVKTEIFAELDKVVTDPDAVLAS 119 (286)
T ss_pred ------hCCCCEEEEecc----------------------cCHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 146799987533 23445667788888888 67766654
No 407
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.89 E-value=18 Score=29.74 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=49.4
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++++|=.|.++ +.++.++++.+.++ +++|+.++-+....+.+++. .+....++..|+.+... .. .
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~~r~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYTYQNDRMKKSLQKL---VDEEDLLVECDVASDESIERAFATIKER 80 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEecCchHHHHHHHhh---ccCceeEEeCCCCCHHHHHHHHHHHHHH
Confidence 467888888875 67888888888754 56888887764333222221 11123566777754321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025211 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|+++.|.-+.
T Consensus 81 ~g~iD~lv~nAg~~ 94 (252)
T PRK06079 81 VGKIDGIVHAIAYA 94 (252)
T ss_pred hCCCCEEEEccccc
Confidence 26799999987654
No 408
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.84 E-value=5.9 Score=34.54 Aligned_cols=99 Identities=19% Similarity=0.214 Sum_probs=59.2
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEc----chhhchhhhcCCC
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINT----DIASGLEKRLAGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~ 115 (256)
+++.+|.=+||| -|...+.-++. .....|+++|+++...+.|++- |.. .+++. |+.+.....-++.
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~----agA~~IiAvD~~~~Kl~~A~~f----GAT-~~vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKA----AGAGRIIAVDINPEKLELAKKF----GAT-HFVNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHH----cCCceEEEEeCCHHHHHHHHhc----CCc-eeecchhhhhHHHHHHHhcCCC
Confidence 456666666665 34444444444 2345899999999999988764 322 22221 4555444443446
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeC
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (256)
.|..+-.- + ....+++....+.++|..+++-..
T Consensus 255 ~d~~~e~~------------------------G---~~~~~~~al~~~~~~G~~v~iGv~ 287 (366)
T COG1062 255 ADYAFECV------------------------G---NVEVMRQALEATHRGGTSVIIGVA 287 (366)
T ss_pred CCEEEEcc------------------------C---CHHHHHHHHHHHhcCCeEEEEecC
Confidence 67665410 0 124677777778889999886643
No 409
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.69 E-value=11 Score=32.59 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=53.9
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+ |.++..+.+.+.. .++. |++++.+++..+.+++ .+.. .++.. +............+
T Consensus 159 ~~g~~vlV~G~--g~vG~~~~~~a~~--~G~~~v~~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~~~~~~~~ 229 (347)
T PRK10309 159 CEGKNVIIIGA--GTIGLLAIQCAVA--LGAKSVTAIDINSEKLALAKS----LGAM-QTFNSREMSAPQIQSVLRELRF 229 (347)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEECCCHHHHHHHHH----cCCc-eEecCcccCHHHHHHHhcCCCC
Confidence 46788888876 4455444443332 2444 7899999988777643 2322 22111 11111111112357
Q ss_pred c-EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 D-VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D-~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
| +|+-.- | -...+....+.|++||+++++.
T Consensus 230 d~~v~d~~------------------------G---~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 230 DQLILETA------------------------G---VPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CeEEEECC------------------------C---CHHHHHHHHHHhhcCCEEEEEc
Confidence 7 554321 0 1346777888999999999864
No 410
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=85.47 E-value=16 Score=29.95 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=48.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.++++|-.|+ +|.++.++++.+.++ +++|+.++.++. +...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~--G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKA--GADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVM 81 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 5688998886 456677788877653 668888876542 22333333334334667777655421 11 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+++.|.-+.
T Consensus 82 g~iD~lv~~ag~~ 94 (251)
T PRK12481 82 GHIDILINNAGII 94 (251)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987543
No 411
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.36 E-value=8.5 Score=29.60 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=57.4
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCc
Q 025211 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPED 131 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~ 131 (256)
|.|..+..+++.|.+. +..|++.|.+++..+...+. + -....+..+.. ...|+|++.-|-
T Consensus 8 GlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~----g---~~~~~s~~e~~-----~~~dvvi~~v~~------ 67 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA----G---AEVADSPAEAA-----EQADVVILCVPD------ 67 (163)
T ss_dssp --SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT----T---EEEESSHHHHH-----HHBSEEEE-SSS------
T ss_pred chHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh----h---hhhhhhhhhHh-----hcccceEeeccc------
Confidence 4567777788877643 56899999999877765442 1 22223333332 245999986441
Q ss_pred ccccccchhhhcCCCCcHHHHHHHHHH--HhhccccCeEEEEEEeCCC--CHHHHHHHHHHcCCc
Q 025211 132 EVGREGIASAWAGGENGRAVIDKILPS--ADKLLSKRGWLYLVTLTAN--DPSQICLQMMEKGYA 192 (256)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~LkpgG~l~~~~~~~~--~~~~~~~~~~~~g~~ 192 (256)
-.....++.. +...|++|.+++-.. +.. ...++.+.+.+.|..
T Consensus 68 -----------------~~~v~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~ 114 (163)
T PF03446_consen 68 -----------------DDAVEAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVR 114 (163)
T ss_dssp -----------------HHHHHHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEE
T ss_pred -----------------chhhhhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhccce
Confidence 1224566666 777777777766422 221 233556666666644
No 412
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.35 E-value=8.8 Score=34.59 Aligned_cols=122 Identities=18% Similarity=0.237 Sum_probs=62.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh----------hcC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----------RLA 113 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----------~~~ 113 (256)
.+|.=+|. |.++..++..|.+. +.+|+++|.+++.++..+.. ..+ +...++.+.... ...
T Consensus 4 ~kI~VIGl--G~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g----~~~--~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 4 ETISVIGL--GYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRG----EIH--IVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred cEEEEECc--chhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCC----CCC--cCCCCHHHHHHHHhhcCceeeeccc
Confidence 34555555 55555566666543 46899999999988753211 111 111111110000 001
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe-CCCCHHHHHHHHHHc
Q 025211 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL-TANDPSQICLQMMEK 189 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~~~~~ 189 (256)
+..|+|+...|-....+ +..........++.+...|++|-.++..+- +....+++...+.+.
T Consensus 74 ~~aDvvii~vptp~~~~--------------~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 74 EPADAFLIAVPTPFKGD--------------HEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred ccCCEEEEEcCCCCCCC--------------CCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 25788887544211000 111233456677888888988777665332 233445666666554
No 413
>PRK06940 short chain dehydrogenase; Provisional
Probab=85.18 E-value=17 Score=30.46 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=49.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh-cCCCc
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR-LAGLV 116 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~-~~~~f 116 (256)
+.+|=-|+ |.++.++++.+. + +++|+.+|.++..++.+.+.+...+....++..|+.+... .. ..+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~-~--G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVG-A--GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHh-C--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 34554564 468888998884 2 6799999998876665555554434344566777654321 10 12579
Q ss_pred cEEEECCCCC
Q 025211 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|++|.|.-+.
T Consensus 78 d~li~nAG~~ 87 (275)
T PRK06940 78 TGLVHTAGVS 87 (275)
T ss_pred CEEEECCCcC
Confidence 9999987543
No 414
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=85.17 E-value=10 Score=32.59 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
.++.+||-.|+|. |..++.+++. .+.+++++..+++..+.+++ .+.+. .....++.+.+... ....+
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~-----~g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~~~~~v 228 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKA-----RGARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELTDGEGA 228 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHhCCCCC
Confidence 4678888887652 4444444443 25689999888887776643 23221 11112222222222 22459
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-- -...+..+.+.|+++|+++.+.
T Consensus 229 d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 229 DVVIDATG---------------------------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHHhcCCEEEEEc
Confidence 99987310 1245677788999999988754
No 415
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=85.13 E-value=5.9 Score=34.80 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=57.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
+++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .+.+ .++.. ++.+.......+
T Consensus 185 ~~g~~VlV~G~--G~vG~~a~~~ak~--~G~~~vi~~~~~~~~~~~~~~----lGa~-~~i~~~~~~~~~~~~v~~~~~~ 255 (368)
T cd08300 185 EPGSTVAVFGL--GAVGLAVIQGAKA--AGASRIIGIDINPDKFELAKK----FGAT-DCVNPKDHDKPIQQVLVEMTDG 255 (368)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-EEEcccccchHHHHHHHHHhCC
Confidence 56788888875 4555555554432 245 69999999998877654 3432 22211 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-.-- -...+....+.|+++ |+++++..
T Consensus 256 g~d~vid~~g---------------------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 256 GVDYTFECIG---------------------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred CCcEEEECCC---------------------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 6899976310 124566777889887 99887643
No 416
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.04 E-value=6 Score=35.28 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEE
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~ 121 (256)
.+||=+|| |.++..++..|.+.+- .+|+..|-+.+..+.+...... ..+..+.|+.+... ... ..+|+||.
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~---~v~~~~vD~~d~~al~~li-~~~d~VIn 74 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGG---KVEALQVDAADVDALVALI-KDFDLVIN 74 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccc---cceeEEecccChHHHHHHH-hcCCEEEE
Confidence 56889999 7777778888776543 6999999998887776654322 34677777766521 222 34599997
Q ss_pred CCCCC
Q 025211 122 NPPYV 126 (256)
Q Consensus 122 npP~~ 126 (256)
--|++
T Consensus 75 ~~p~~ 79 (389)
T COG1748 75 AAPPF 79 (389)
T ss_pred eCCch
Confidence 55544
No 417
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.03 E-value=17 Score=30.41 Aligned_cols=82 Identities=10% Similarity=-0.025 Sum_probs=48.6
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++++|=.|.+ ++.++.++++.+.++ +++|+.+.-++...+.+++.....+. ...+..|+.+... .. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~--G~~V~l~~r~~~~~~~~~~l~~~~~~-~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAA--GAELAFTYQGDALKKRVEPLAAELGA-FVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCchHHHHHHHHHHHhcCC-ceEEecCCCCHHHHHHHHHHHHHh
Confidence 45778888887 477888888888754 56887776554333333333222221 2456677644321 11 1
Q ss_pred CCCccEEEECCCCC
Q 025211 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+.+|++|.|.-+.
T Consensus 86 ~g~iD~lv~nAG~~ 99 (272)
T PRK08159 86 WGKLDFVVHAIGFS 99 (272)
T ss_pred cCCCcEEEECCccc
Confidence 25799999987553
No 418
>PRK09291 short chain dehydrogenase; Provisional
Probab=85.01 E-value=9.2 Score=31.32 Aligned_cols=79 Identities=18% Similarity=0.144 Sum_probs=51.5
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhcCCCccEEEE
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~fD~Ii~ 121 (256)
++||=.|+ +|.++..+++.+.+. +++|++++-++...+...+.....+....++.+|+.+... ......+|+++.
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 46777776 456677777777643 5789999888776655555544444445777788765421 122347999999
Q ss_pred CCCC
Q 025211 122 NPPY 125 (256)
Q Consensus 122 npP~ 125 (256)
|--+
T Consensus 80 ~ag~ 83 (257)
T PRK09291 80 NAGI 83 (257)
T ss_pred CCCc
Confidence 7544
No 419
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.38 E-value=12 Score=32.06 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=51.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNP 123 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~np 123 (256)
.+|.=+|+| .++..++..+.+.+....|+++|.+++..+.+++ .+.... ...+..+. -...|+|+..-
T Consensus 7 ~~I~IIG~G--~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~~-~~~~~~~~-----~~~aDvViiav 74 (307)
T PRK07502 7 DRVALIGIG--LIGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGDR-VTTSAAEA-----VKGADLVILCV 74 (307)
T ss_pred cEEEEEeeC--HHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCce-ecCCHHHH-----hcCCCEEEECC
Confidence 567777765 4444455555433322479999999987766543 232111 11122121 14579999865
Q ss_pred CCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEE
Q 025211 124 PYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYL 171 (256)
Q Consensus 124 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 171 (256)
|-. ....+++.+...++++..++.
T Consensus 75 p~~------------------------~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 75 PVG------------------------ASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred CHH------------------------HHHHHHHHHHhhCCCCCEEEe
Confidence 421 134556666677888876543
No 420
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=84.35 E-value=1.8 Score=32.68 Aligned_cols=105 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred ccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc------eEEEcchhhchhhhcCCCccEEEECCC
Q 025211 51 CGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA------DLINTDIASGLEKRLAGLVDVMVVNPP 124 (256)
Q Consensus 51 cG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~Ii~npP 124 (256)
.|.|.++..++..|.+ .+..|+.+.-.+ .++..+ ..++.. ..+...............+|+|+..-.
T Consensus 4 ~G~GaiG~~~a~~L~~--~g~~V~l~~r~~-~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 4 IGAGAIGSLYAARLAQ--AGHDVTLVSRSP-RLEAIK----EQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp ESTSHHHHHHHHHHHH--TTCEEEEEESHH-HHHHHH----HHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred ECcCHHHHHHHHHHHH--CCCceEEEEccc-cHHhhh----heeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 3666677777777765 356899999877 555433 233221 111111100000112468999998422
Q ss_pred CCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 125 YVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
.+ .....++.+.+.+.++..+++...+....+.+.+.+
T Consensus 77 a~------------------------~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY------------------------QLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAEYF 114 (151)
T ss_dssp GG------------------------GHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHCHS
T ss_pred cc------------------------chHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHHHc
Confidence 11 156788889999999988888776666555555554
No 421
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.33 E-value=19 Score=29.77 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=49.8
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCH--HHHHHHHHHHHHcCCcceEEEcchhhchh------hh-
Q 025211 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINP--YAVEVTRKTLEAHNVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~--~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~- 111 (256)
.++++|=.|+| ++.++.++++.+.++ +++|+.++.+. +..+...+.+ +....++..|+.+... ..
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~i~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRL---PEPAPVLELDVTNEEHLASLADRVR 80 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhc---CCCCcEEeCCCCCHHHHHHHHHHHH
Confidence 46789999986 678888889887754 56888887653 3333332222 2223566677654421 10
Q ss_pred -cCCCccEEEECCCCC
Q 025211 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+++|++|.|.-+.
T Consensus 81 ~~~g~iD~li~nAG~~ 96 (256)
T PRK07889 81 EHVDGLDGVVHSIGFA 96 (256)
T ss_pred HHcCCCcEEEEccccc
Confidence 126799999987543
No 422
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.29 E-value=9.4 Score=32.24 Aligned_cols=109 Identities=16% Similarity=0.188 Sum_probs=59.7
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cC-Ccc--------eEE-Ecchhhc
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HN-VHA--------DLI-NTDIASG 107 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~-~~~--------~~~-~~d~~~~ 107 (256)
+|.=+|+ |.++..++..+.+. +..|+++|.+++.++.+++.+.. .+ +.. .+. ..|...
T Consensus 5 kI~VIG~--G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 5 KIGVIGA--GTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred EEEEEcc--CHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 3444555 55555556655433 45899999999998766543322 22 110 111 122211
Q ss_pred hhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 108 LEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 108 ~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
-+..|+|+..-| ........++..+.+.++++.++...+.+ -....+.+.+
T Consensus 80 -----~~~aDlVi~av~----------------------e~~~~k~~~~~~l~~~~~~~~il~s~ts~-~~~~~la~~~ 130 (282)
T PRK05808 80 -----LKDADLVIEAAT----------------------ENMDLKKKIFAQLDEIAKPEAILATNTSS-LSITELAAAT 130 (282)
T ss_pred -----hccCCeeeeccc----------------------ccHHHHHHHHHHHHhhCCCCcEEEECCCC-CCHHHHHHhh
Confidence 146799887432 11223468888888889998877543332 2233444444
No 423
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.12 E-value=13 Score=32.12 Aligned_cols=99 Identities=20% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcC-CCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLA-GLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~-~~f 116 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|++++.+++..+.+++ .+.+. .....++.+.+..... ..+
T Consensus 171 ~~g~~vlI~g~--g~vG~~a~q~a~~--~G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 171 KPGDTALVLGA--GPIGLLTILALKA--AGASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHhCCCCC
Confidence 46778877764 4555555554443 245 78999988888777644 23322 1112233222222222 349
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+++-.-. ....+..+.+.|+++|+++.+..
T Consensus 243 d~vid~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAG---------------------------VQATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHhccCCCEEEEEcc
Confidence 99987421 12356777888999999887543
No 424
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=84.05 E-value=11 Score=31.24 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccE
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDV 118 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~ 118 (256)
.++.+||=.|+|. |..++.+++.+ ++. +++++.+++..+.+++. +....+....- .. .....+|+
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~-----g~~~vi~~~~~~~~~~~~~~~----g~~~~~~~~~~-~~---~~~~~~d~ 162 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAA-----GAREVVGVDPDAARRELAEAL----GPADPVAADTA-DE---IGGRGADV 162 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc-----CCCcEEEECCCHHHHHHHHHc----CCCccccccch-hh---hcCCCCCE
Confidence 4678888887653 44444444442 345 99999998887766542 21111111100 00 01246899
Q ss_pred EEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 119 MVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 119 Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
|+..-. ....+....+.|+++|+++.+..
T Consensus 163 vl~~~~---------------------------~~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 163 VIEASG---------------------------SPSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred EEEccC---------------------------ChHHHHHHHHHhcCCcEEEEEec
Confidence 986311 12456777888999999987643
No 425
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.00 E-value=13 Score=32.16 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=53.5
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEc---ch---hhchhh-h
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINT---DI---ASGLEK-R 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~---~~~~~~-~ 111 (256)
.++.+||=.|+|. |..++.+++. .++. +++++.+++..+.+++. +.+ .++.. +. .+.... .
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~-----~G~~~v~~~~~~~~~~~~~~~~----g~~-~vi~~~~~~~~~~~~~~~~~~ 230 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKA-----FGATKVVVTDIDPSRLEFAKEL----GAT-HTVNVRTEDTPESAEKIAELL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHHc----CCc-EEeccccccchhHHHHHHHHh
Confidence 4677888776543 3444444443 2445 89998888777666441 322 22111 11 111111 1
Q ss_pred cCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 112 LAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
....+|+|+-.-. ....+....+.|+++|+++.+.
T Consensus 231 ~~~~~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 231 GGKGPDVVIECTG---------------------------AESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCCCCCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 1245999986311 1235777788999999988754
No 426
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.78 E-value=11 Score=32.14 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCc
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~f 116 (256)
.++.+||-.|+| .|...+.+++. .++. +++++.+++..+.+++ .+.. .++..+-.+.. .......+
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~-----~G~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~v 227 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKL-----NGASRVTVAEPNEEKLELAKK----LGAT-ETVDPSREDPEAQKEDNPYGF 227 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCcEEEEECCCHHHHHHHHH----hCCe-EEecCCCCCHHHHHHhcCCCC
Confidence 467889988754 24444444443 2445 8899999887776643 2332 22221111100 11123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-+ ....+....+.|+++|+++.+.
T Consensus 228 d~v~~~~~---------------------------~~~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 228 DVVIEATG---------------------------VPKTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred cEEEECCC---------------------------ChHHHHHHHHHHhcCCEEEEEe
Confidence 99987421 1345677788899999998754
No 427
>PRK06196 oxidoreductase; Provisional
Probab=83.75 E-value=18 Score=30.91 Aligned_cols=78 Identities=13% Similarity=0.123 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|++++-+++..+.+...+. ...++.+|+.+... .. ..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~--G~~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQA--GAHVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 5678888885 566788888887654 5689999988776655444332 13566777665421 11 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|..+.
T Consensus 98 ~~iD~li~nAg~~ 110 (315)
T PRK06196 98 RRIDILINNAGVM 110 (315)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987654
No 428
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=83.63 E-value=15 Score=31.81 Aligned_cols=97 Identities=20% Similarity=0.176 Sum_probs=56.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~ 115 (256)
+++.+||=.|+ |.++..+++..... ++ .++++|.+++..+.+++ .+.+ .++. .+..+...... ...
T Consensus 165 ~~g~~vlI~g~--g~iG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~-~~v~~~~~~~~~~i~~~~~~~~ 235 (351)
T cd08285 165 KLGDTVAVFGI--GPVGLMAVAGARLR--GAGRIIAVGSRPNRVELAKE----YGAT-DIVDYKNGDVVEQILKLTGGKG 235 (351)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCc-eEecCCCCCHHHHHHHHhCCCC
Confidence 46788888875 44554444443322 34 59999999887776654 3332 2221 12222221211 246
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++..-. -...+..+.+.|+++|+++.+.
T Consensus 236 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 236 VDAVIIAGG---------------------------GQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred CcEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEec
Confidence 999986311 1245778888999999988754
No 429
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=83.29 E-value=12 Score=30.30 Aligned_cols=83 Identities=20% Similarity=0.276 Sum_probs=53.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|++++-++.......+.+...+....++.+|+.+... ... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAAD--GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4577886664 677788888877654 5689999988776665555554444344677778765421 111 1
Q ss_pred CCccEEEECCCCCC
Q 025211 114 GLVDVMVVNPPYVP 127 (256)
Q Consensus 114 ~~fD~Ii~npP~~~ 127 (256)
+.+|.|+.+.....
T Consensus 82 ~~~d~vi~~ag~~~ 95 (251)
T PRK12826 82 GRLDILVANAGIFP 95 (251)
T ss_pred CCCCEEEECCCCCC
Confidence 46899999875543
No 430
>PRK07774 short chain dehydrogenase; Provisional
Probab=83.16 E-value=23 Score=28.74 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=52.3
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +.+|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 456788777 6677788888887654 5689999988766655544443322223566777765421 00 01
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.+-.+.
T Consensus 82 ~~id~vi~~ag~~ 94 (250)
T PRK07774 82 GGIDYLVNNAAIY 94 (250)
T ss_pred CCCCEEEECCCCc
Confidence 4689999977654
No 431
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=83.14 E-value=22 Score=30.24 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=60.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCC-cc--------eE-EEcchhh
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNV-HA--------DL-INTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~-~~--------~~-~~~d~~~ 106 (256)
++|.=+|+ |.++..++..+.. .+..|+++|.+++.++.+++.+.. .+. .. .. ...+. +
T Consensus 5 ~~V~vIG~--G~mG~~iA~~l~~--~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~ 79 (295)
T PLN02545 5 KKVGVVGA--GQMGSGIAQLAAA--AGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E 79 (295)
T ss_pred CEEEEECC--CHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence 45555655 5555556665543 356899999999998876655431 111 00 01 11121 1
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
. -...|+|+..-| ...+....++.++...++++.+++..+.+. ...++.+.+
T Consensus 80 ---~--~~~aD~Vieav~----------------------e~~~~k~~v~~~l~~~~~~~~il~s~tS~i-~~~~l~~~~ 131 (295)
T PLN02545 80 ---E--LRDADFIIEAIV----------------------ESEDLKKKLFSELDRICKPSAILASNTSSI-SITRLASAT 131 (295)
T ss_pred ---H--hCCCCEEEEcCc----------------------cCHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHHHHHhhc
Confidence 1 145799987533 112345677888888888887665433333 344444444
No 432
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=83.04 E-value=8.1 Score=33.28 Aligned_cols=96 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCCEEEEecccc-cHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcceEEEcch--hhchhhhc-CCC
Q 025211 41 HHPVLCMEVGCGS-GYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHADLINTDI--ASGLEKRL-AGL 115 (256)
Q Consensus 41 ~~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~--~~~~~~~~-~~~ 115 (256)
.++.+||-.|+|. |..++.+++. .++. +++++-+++..+.+++ .+.. .++..+- ...+.... ...
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~-----~G~~~v~~~~~~~~~~~~l~~----~g~~-~~~~~~~~~~~~~~~~~~~~~ 227 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKI-----LGAKRVIAVDIDDEKLAVARE----LGAD-DTINPKEEDVEKVRELTEGRG 227 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----cCCCEEEEEcCCHHHHHHHHH----cCCC-EEecCccccHHHHHHHhCCCC
Confidence 4677888887543 4444444443 2455 9999888877665532 2332 2221110 11111111 235
Q ss_pred ccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 116 VDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 116 fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+|+++.... -...+..+.+.|+++|+++.+.
T Consensus 228 ~d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 228 ADLVIEAAG---------------------------SPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred CCEEEECCC---------------------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 999987411 1245677788999999988754
No 433
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=82.99 E-value=12 Score=30.58 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=50.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCC
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGL 115 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~ 115 (256)
++||=.| |+|.++..+++.+.++ +..|++++-++...+.....+...+....++.+|+.+... .. ....
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~--g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAA--GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGG 78 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 3556566 6677788888877644 5689999998877666655554444344677777765420 10 1245
Q ss_pred ccEEEECCCC
Q 025211 116 VDVMVVNPPY 125 (256)
Q Consensus 116 fD~Ii~npP~ 125 (256)
.|.|+.+.-.
T Consensus 79 ~d~vi~~a~~ 88 (255)
T TIGR01963 79 LDILVNNAGI 88 (255)
T ss_pred CCEEEECCCC
Confidence 8999987644
No 434
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=82.95 E-value=8.3 Score=33.81 Aligned_cols=98 Identities=20% Similarity=0.183 Sum_probs=57.2
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+.+.+.. .++ .|+++|.+++..+.+++ .|.. .++.. ++.+.......+
T Consensus 186 ~~g~~VlV~G~--g~vG~~a~q~ak~--~G~~~vi~~~~~~~~~~~~~~----~Ga~-~~i~~~~~~~~~~~~v~~~~~~ 256 (369)
T cd08301 186 KKGSTVAIFGL--GAVGLAVAEGARI--RGASRIIGVDLNPSKFEQAKK----FGVT-EFVNPKDHDKPVQEVIAEMTGG 256 (369)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEcCCHHHHHHHHH----cCCc-eEEcccccchhHHHHHHHHhCC
Confidence 57788888875 5666555554432 244 79999999988887754 3432 22211 122222222234
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+++-... ....+....+.++++ |+++++..
T Consensus 257 ~~d~vid~~G---------------------------~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 257 GVDYSFECTG---------------------------NIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHHhhcCCCEEEEECc
Confidence 6898876311 124466667788996 99887543
No 435
>PRK09242 tropinone reductase; Provisional
Probab=82.90 E-value=25 Score=28.84 Aligned_cols=81 Identities=11% Similarity=0.047 Sum_probs=52.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh--
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR-- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~-- 111 (256)
.++++|=.|++ |.++..+++.+.++ +++|+.++.+++..+...+.+... +....++..|+.+... ..
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGL--GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVED 84 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 56788888874 45566677776644 568999998887776666655443 2233666777754321 10
Q ss_pred cCCCccEEEECCCC
Q 025211 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.-+++|+++.+.-+
T Consensus 85 ~~g~id~li~~ag~ 98 (257)
T PRK09242 85 HWDGLHILVNNAGG 98 (257)
T ss_pred HcCCCCEEEECCCC
Confidence 12578999987654
No 436
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=82.65 E-value=17 Score=30.01 Aligned_cols=82 Identities=13% Similarity=0.094 Sum_probs=47.0
Q ss_pred CCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHH---HHHHHHHHHHHcCCcceEEEcchhhchh------hh
Q 025211 42 HPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPY---AVEVTRKTLEAHNVHADLINTDIASGLE------KR 111 (256)
Q Consensus 42 ~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~---~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~ 111 (256)
.++++|=.|++ ++.++.++++.+.++ +++|+.++.+.+ ..+.+. .+...+-...++..|+.+... ..
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVR-ELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHH-HHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 46788989985 678888899888754 567776654322 111222 122111122456666644321 11
Q ss_pred --cCCCccEEEECCCCC
Q 025211 112 --LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 --~~~~fD~Ii~npP~~ 126 (256)
.-+++|+++.|.-+.
T Consensus 82 ~~~~g~iD~lv~nag~~ 98 (258)
T PRK07370 82 KQKWGKLDILVHCLAFA 98 (258)
T ss_pred HHHcCCCCEEEEccccc
Confidence 125799999987654
No 437
>PRK08324 short chain dehydrogenase; Validated
Probab=82.53 E-value=18 Score=34.89 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=50.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ ++.|+++|.++...+.+...+... ....++..|+.+... .. .-
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~--Ga~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAE--GACVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHC--cCEEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4578887776 455677777777654 568999999988776655544321 123566667654321 00 02
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|+||.|--..
T Consensus 497 g~iDvvI~~AG~~ 509 (681)
T PRK08324 497 GGVDIVVSNAGIA 509 (681)
T ss_pred CCCCEEEECCCCC
Confidence 4789999876543
No 438
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.50 E-value=13 Score=30.37 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCC-cceEEEcchhhc--------hhhh-
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNV-HADLINTDIASG--------LEKR- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~-~~~~~~~d~~~~--------~~~~- 111 (256)
++++||=.| |+|.++..+++.+.+. +++|++++.+++..+...+.+...+. ...++..|+... ....
T Consensus 11 ~~k~vlItG-~~g~iG~~la~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 11 KDRIILVTG-AGDGIGREAALTYARH--GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 578888888 5777888888887654 56999999998776665555544332 224555555311 0011
Q ss_pred -cCCCccEEEECCC
Q 025211 112 -LAGLVDVMVVNPP 124 (256)
Q Consensus 112 -~~~~fD~Ii~npP 124 (256)
..+++|.||.+-.
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 1257899998753
No 439
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=82.49 E-value=1.5 Score=42.06 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=38.4
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
.+..++|+..|.|+++++.+.+ |+.|+++|++|.++-..+..+.
T Consensus 90 ~~~~~lDPfAG~GSIPlEAlRL------G~~v~AvelnPvAylfLKavlE 133 (875)
T COG1743 90 EGPKLLDPFAGGGSIPLEALRL------GLEVVAVELNPVAYLFLKAVLE 133 (875)
T ss_pred cCCcccccccCCCccchHHHhc------CceeEEEecccHHHHHHHHHHh
Confidence 5689999999999999998887 5799999999999888777654
No 440
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.42 E-value=3.6 Score=34.96 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=67.3
Q ss_pred Cccc-cccceeeeccCCccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCC
Q 025211 1 MSLR-TAQIRLVSSHPEVYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN 79 (256)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~ 79 (256)
||+| .++++-..++.+.=+|+.+...+-. .... ...-.+++||=.|+ +|.++..+++.+.++ ++.|++++-+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~k~vlItGa-sggIG~~la~~La~~--G~~Vi~~~R~ 73 (293)
T PRK05866 1 MSKRPLRRLTDQLTLAGMRPPISPQLLINR---PPRQ-PVDLTGKRILLTGA-SSGIGEAAAEQFARR--GATVVAVARR 73 (293)
T ss_pred CCcchHHHHHHHHHHhccCCCCCchhhcCC---CCCC-CcCCCCCEEEEeCC-CcHHHHHHHHHHHHC--CCEEEEEECC
Confidence 4555 4555544455555556554332211 0000 00124577887776 456677777777643 5789999999
Q ss_pred HHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cCCCccEEEECCCC
Q 025211 80 PYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LAGLVDVMVVNPPY 125 (256)
Q Consensus 80 ~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~~~fD~Ii~npP~ 125 (256)
++.++...+.+...+....++..|+.+... .. .-+.+|+++.|.-.
T Consensus 74 ~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 74 EDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 877766665554434344677777664321 11 12478999987643
No 441
>PRK05872 short chain dehydrogenase; Provisional
Probab=82.39 E-value=27 Score=29.59 Aligned_cols=81 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
++++||=.|++ |.++..+++.+.++ +++|+.++.+++.++...+.+.. +.....+..|+.+... .. .-
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~--G~~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHAR--GAKLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 56788877754 55567777777643 57899999988776655443321 1122334466654321 10 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-..
T Consensus 84 g~id~vI~nAG~~ 96 (296)
T PRK05872 84 GGIDVVVANAGIA 96 (296)
T ss_pred CCCCEEEECCCcC
Confidence 5799999987543
No 442
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=82.19 E-value=10 Score=33.26 Aligned_cols=98 Identities=19% Similarity=0.154 Sum_probs=55.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc-----chhhchhhhcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT-----DIASGLEKRLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~-----d~~~~~~~~~~~ 114 (256)
.++.+||=.|+ |.++..+++.... .++ .|+++|.+++..+.+++ .+.+ .++.. ++.+........
T Consensus 183 ~~g~~vlV~G~--g~vG~~~~~~a~~--~G~~~Vi~~~~~~~~~~~~~~----~ga~-~~i~~~~~~~~~~~~~~~~~~~ 253 (365)
T cd08277 183 EPGSTVAVFGL--GAVGLSAIMGAKI--AGASRIIGVDINEDKFEKAKE----FGAT-DFINPKDSDKPVSEVIREMTGG 253 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCCeEEEEeCCHHHHHHHHH----cCCC-cEeccccccchHHHHHHHHhCC
Confidence 46788888875 4555444443332 245 79999999888877754 2332 12111 112222222224
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.+|+|+-.-- -...+....+.|+++ |+++++..
T Consensus 254 g~d~vid~~g---------------------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 254 GVDYSFECTG---------------------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred CCCEEEECCC---------------------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 6899986310 124566677788885 99887543
No 443
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.11 E-value=30 Score=29.32 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc--CCcceEEEcchhhchh------hh-
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH--NVHADLINTDIASGLE------KR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~--~~~~~~~~~d~~~~~~------~~- 111 (256)
..+++||=.|+ +|.++..+++.+.++ +++|+.++-+++..+.+.+.+... +....++..|+.+... ..
T Consensus 14 ~~~k~vlItGa-s~gIG~~~a~~l~~~--G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 14 QSGRVAVVTGA-NTGLGYETAAALAAK--GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 46678887775 566777788877654 568888888877666555544432 2233677788765421 11
Q ss_pred -cCCCccEEEECCCCC
Q 025211 112 -LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 -~~~~fD~Ii~npP~~ 126 (256)
.-+.+|++|.|....
T Consensus 91 ~~~~~iD~li~nAg~~ 106 (306)
T PRK06197 91 AAYPRIDLLINNAGVM 106 (306)
T ss_pred hhCCCCCEEEECCccc
Confidence 124689999987543
No 444
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=82.06 E-value=26 Score=28.52 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=50.1
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--h----h--cCCCc
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--K----R--LAGLV 116 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~----~--~~~~f 116 (256)
++|=.|+ +|.++..+++.+.++ ++.|+.++-++...+...+.+...+....++..|+.+... . . ..+..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKD--GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4555664 677777788877654 5689999988766655555554444444677777654321 0 0 12468
Q ss_pred cEEEECCCCC
Q 025211 117 DVMVVNPPYV 126 (256)
Q Consensus 117 D~Ii~npP~~ 126 (256)
|.+|.+....
T Consensus 79 d~vi~~ag~~ 88 (254)
T TIGR02415 79 DVMVNNAGVA 88 (254)
T ss_pred CEEEECCCcC
Confidence 9999987654
No 445
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=82.02 E-value=20 Score=30.61 Aligned_cols=95 Identities=21% Similarity=0.220 Sum_probs=54.4
Q ss_pred CCCCEEEEeccc-ccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEE
Q 025211 41 HHPVLCMEVGCG-SGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVM 119 (256)
Q Consensus 41 ~~~~~VLDlGcG-~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~I 119 (256)
.++.+||-.|+| .|..++.+++. .+..+++++.+++..+.+++ .+.+ .++..+-...... ..+.+|++
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~-----~G~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~-~~~~~d~v 229 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARA-----MGFETVAITRSPDKRELARK----LGAD-EVVDSGAELDEQA-AAGGADVI 229 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH-----CCCEEEEEeCCHHHHHHHHH----hCCc-EEeccCCcchHHh-ccCCCCEE
Confidence 467788888875 44443333333 24689999999888776643 2222 1211111111101 12468988
Q ss_pred EECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 120 VVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 120 i~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+..-. ....+..+.+.|+++|+++.+.
T Consensus 230 i~~~~---------------------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 230 LVTVV---------------------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred EECCC---------------------------cHHHHHHHHHhcccCCEEEEEC
Confidence 76311 1245677788999999998764
No 446
>PRK06057 short chain dehydrogenase; Provisional
Probab=82.01 E-value=19 Score=29.49 Aligned_cols=77 Identities=21% Similarity=0.210 Sum_probs=48.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
++++||=.|++ |.++..+++.+.++ +++|++++.++...+...+.+. ..++..|+.+... .. ..
T Consensus 6 ~~~~vlItGas-ggIG~~~a~~l~~~--G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 6 AGRVAVITGGG-SGIGLATARRLAAE--GATVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 56889988885 56677778777654 5789999988766554433321 1455566544311 00 11
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.|+.+..+.
T Consensus 78 ~~id~vi~~ag~~ 90 (255)
T PRK06057 78 GSVDIAFNNAGIS 90 (255)
T ss_pred CCCCEEEECCCcC
Confidence 4689999886543
No 447
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=81.82 E-value=17 Score=31.00 Aligned_cols=98 Identities=10% Similarity=0.052 Sum_probs=51.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEE---cchhhchhhhc-CCCcc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLIN---TDIASGLEKRL-AGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~---~d~~~~~~~~~-~~~fD 117 (256)
.+.+++=+.-|+|.++..+.+... ..++++++++.+++..+.+++ .+.+ .++. .++.+...... ...+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~--~~G~~vi~~~~~~~~~~~~~~----~g~~-~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCK--ADGIKVINIVRRKEQVDLLKK----IGAE-YVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHHHH----cCCc-EEEECCCccHHHHHHHHhCCCCCc
Confidence 344454442333444433333222 235689999999988777755 3433 2222 22222222221 23689
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
+++...- ........+.|+++|+++.+..
T Consensus 215 ~vid~~g----------------------------~~~~~~~~~~l~~~G~~v~~g~ 243 (324)
T cd08291 215 IFFDAVG----------------------------GGLTGQILLAMPYGSTLYVYGY 243 (324)
T ss_pred EEEECCC----------------------------cHHHHHHHHhhCCCCEEEEEEe
Confidence 9986310 1123445667899999987653
No 448
>PRK08628 short chain dehydrogenase; Provisional
Probab=81.55 E-value=26 Score=28.66 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=49.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hhc------C
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KRL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~------~ 113 (256)
+++++|=.|. +|.++..+++.+.++ ++.++.++.++...+. .+.+...+....++..|+.+... ... -
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~--G~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEE--GAIPVIFGRSAPDDEF-AEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHc--CCcEEEEcCChhhHHH-HHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 4667777775 566788888877654 5678888877766533 33333334344677777754321 101 1
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 82 ~~id~vi~~ag~ 93 (258)
T PRK08628 82 GRIDGLVNNAGV 93 (258)
T ss_pred CCCCEEEECCcc
Confidence 478999998754
No 449
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=81.54 E-value=39 Score=30.20 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=26.5
Q ss_pred cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHH
Q 025211 52 GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRK 88 (256)
Q Consensus 52 G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~ 88 (256)
|.|.++..++..+.. +..|+++|++++.++.+++
T Consensus 7 GlGyvGl~~A~~lA~---G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQ---NHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHh---CCcEEEEECCHHHHHHHHc
Confidence 777777777766552 4689999999999988765
No 450
>PRK08703 short chain dehydrogenase; Provisional
Probab=81.54 E-value=11 Score=30.64 Aligned_cols=80 Identities=15% Similarity=0.078 Sum_probs=49.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-CcceEEEcchhhc--------hh---
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-VHADLINTDIASG--------LE--- 109 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~~~~~~~~d~~~~--------~~--- 109 (256)
++++|+=.|+ +|.++..+++.+.++ +.+|++++-++...+...+.+...+ ....++..|+.+. ..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~ 81 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAA--GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHH
Confidence 4678898884 667777788877653 5689999998877666555554332 1224455554321 11
Q ss_pred hhcCCCccEEEECCC
Q 025211 110 KRLAGLVDVMVVNPP 124 (256)
Q Consensus 110 ~~~~~~fD~Ii~npP 124 (256)
....+.+|.|+.+.-
T Consensus 82 ~~~~~~id~vi~~ag 96 (239)
T PRK08703 82 EATQGKLDGIVHCAG 96 (239)
T ss_pred HHhCCCCCEEEEecc
Confidence 111156899998754
No 451
>PRK12743 oxidoreductase; Provisional
Probab=81.53 E-value=28 Score=28.55 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=50.8
Q ss_pred CCEEEEecccccHHHHHHHHHhcccCCCceEEEEe-CCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 43 PVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATD-INPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 43 ~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD-~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++||=.|+ +|.++..+++.+.++ +++|+.+. .+....+.+.+.+...+....++..|+.+... .. .-
T Consensus 2 ~k~vlItGa-s~giG~~~a~~l~~~--G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (256)
T PRK12743 2 AQVAIVTAS-DSGIGKACALLLAQQ--GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRL 78 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 357787885 566788888887654 56787764 45555555555555555445777788765421 10 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|.+|.+.-+.
T Consensus 79 ~~id~li~~ag~~ 91 (256)
T PRK12743 79 GRIDVLVNNAGAM 91 (256)
T ss_pred CCCCEEEECCCCC
Confidence 5789999987553
No 452
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.36 E-value=9.5 Score=31.39 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=56.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
++++||=.| |+|.++..+++.+.++ +++|+.++-++...+...+.+...+....++.+|+.+... .. ..
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEA--GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888888 6778888888887654 5689999998877776666665544444677888765321 00 01
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|.|+.+...
T Consensus 88 ~~id~vi~~ag~ 99 (259)
T PRK08213 88 GHVDILVNNAGA 99 (259)
T ss_pred CCCCEEEECCCC
Confidence 468999998654
No 453
>PRK07109 short chain dehydrogenase; Provisional
Probab=81.34 E-value=13 Score=32.37 Aligned_cols=81 Identities=17% Similarity=0.118 Sum_probs=54.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. .-
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~--G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARR--GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 4567777774 556677777777643 5689999999888777766666555455677778655421 00 12
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 84 g~iD~lInnAg~ 95 (334)
T PRK07109 84 GPIDTWVNNAMV 95 (334)
T ss_pred CCCCEEEECCCc
Confidence 579999987654
No 454
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=81.26 E-value=7 Score=37.71 Aligned_cols=48 Identities=10% Similarity=0.098 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhccccCeEEEEEEeCCCCHH--HHHHH-HHHcCCcEEEEEe
Q 025211 151 VIDKILPSADKLLSKRGWLYLVTLTANDPS--QICLQ-MMEKGYAARIVVQ 198 (256)
Q Consensus 151 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~~-~~~~g~~~~~~~~ 198 (256)
.+..+++.++++|+++|+++.......... .+... ..+.|+.....++
T Consensus 566 l~~~a~~~~rEll~ddg~lv~y~ahk~~eaW~tlveA~~Rragl~iTr~~p 616 (875)
T COG1743 566 LFREAFQAVRELLKDDGRLVTYYAHKAPEAWITLVEAGWRRAGLQITRAWP 616 (875)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEeccCccchHHHHHHHhhhcCceeecccc
Confidence 455678889999999999988655333222 23333 5566776655543
No 455
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=81.11 E-value=8.2 Score=34.29 Aligned_cols=94 Identities=15% Similarity=0.143 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHH-------cCCc-
Q 025211 25 FALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEA-------HNVH- 96 (256)
Q Consensus 25 ~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~-------~~~~- 96 (256)
+...+.+.....++..++.+...|+|+|.|.....++...+ ...=+|+++.+..-+.+..+... .|-.
T Consensus 175 E~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~----~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~ 250 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAG----CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKP 250 (419)
T ss_pred hhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhc----cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCc
Confidence 44445555544555568899999999999987666666533 22466777766655555443322 2332
Q ss_pred --ceEEEcchhhchh-hhcCCCccEEEEC
Q 025211 97 --ADLINTDIASGLE-KRLAGLVDVMVVN 122 (256)
Q Consensus 97 --~~~~~~d~~~~~~-~~~~~~fD~Ii~n 122 (256)
.+.+++++.+... .......++|+.|
T Consensus 251 ~~~~~i~gsf~~~~~v~eI~~eatvi~vN 279 (419)
T KOG3924|consen 251 NKIETIHGSFLDPKRVTEIQTEATVIFVN 279 (419)
T ss_pred CceeecccccCCHHHHHHHhhcceEEEEe
Confidence 2677777765532 1124567888886
No 456
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.95 E-value=20 Score=30.75 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=29.7
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHH
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVT 86 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a 86 (256)
.+.+|+=+|+|. .+..++..+... ++.|+.+|.++...+.+
T Consensus 151 ~g~kvlViG~G~--iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~ 191 (296)
T PRK08306 151 HGSNVLVLGFGR--TGMTLARTLKAL--GANVTVGARKSAHLARI 191 (296)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence 579999999864 555566666543 56999999998765444
No 457
>PRK05717 oxidoreductase; Validated
Probab=80.87 E-value=29 Score=28.37 Aligned_cols=80 Identities=21% Similarity=0.220 Sum_probs=49.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
..+++||=.|. +|.++..+++.+.++ +++|+.+|.++...+...+. .+....++..|+.+... .. .
T Consensus 8 ~~~k~vlItG~-sg~IG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 8 HNGRVALVTGA-ARGIGLGIAAWLIAE--GWQVVLADLDRERGSKVAKA---LGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cCCCEEEEeCC-cchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHH---cCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 45678886665 466777788877654 56899999886544332222 12223677777765421 11 1
Q ss_pred CCCccEEEECCCCC
Q 025211 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.+..+.
T Consensus 82 ~g~id~li~~ag~~ 95 (255)
T PRK05717 82 FGRLDALVCNAAIA 95 (255)
T ss_pred hCCCCEEEECCCcc
Confidence 14689999987654
No 458
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.56 E-value=9.7 Score=31.23 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=55.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.| |+|.++..+++.+.++ +++|++++-++...+...+.+...+....++..|+.+... .. .-
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA--GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 568888888 5777888888887654 5689999998887776666665444444667777765321 11 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|.++.+....
T Consensus 86 ~~~d~li~~ag~~ 98 (255)
T PRK07523 86 GPIDILVNNAGMQ 98 (255)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987543
No 459
>PRK06139 short chain dehydrogenase; Provisional
Probab=80.51 E-value=13 Score=32.27 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=54.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-+++.++...+.+...+.+..++..|+.+... .. ..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~--G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARR--GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4577777776 455677777777654 5789999999888877777666555554566777654321 10 12
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+.+|++|.|--+
T Consensus 83 g~iD~lVnnAG~ 94 (330)
T PRK06139 83 GRIDVWVNNVGV 94 (330)
T ss_pred CCCCEEEECCCc
Confidence 579999998654
No 460
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=80.43 E-value=7.2 Score=33.34 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHH
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLE 91 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~ 91 (256)
+.+.+|.-+|+|...++..++. .| +.|.+||+++..+..-+-.+.
T Consensus 62 g~ghrivtigSGGcn~L~ylsr-----~P-a~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSR-----AP-ARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhc-----CC-ceeEEEeCCHHHHHHHHHHHH
Confidence 5678999999997765433333 35 499999999999887665554
No 461
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=80.35 E-value=4.5 Score=31.14 Aligned_cols=55 Identities=16% Similarity=0.118 Sum_probs=39.5
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025211 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
..||.||...| +......-.|..+...|++||.++++.....-..-+.+.+..++
T Consensus 68 ~~~D~vvly~P----------------------KaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 68 QDFDTVVLYWP----------------------KAKAEAQYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp TT-SEEEEE------------------------SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred cCCCEEEEEcc----------------------CcHHHHHHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 57999999655 22334667789999999999999999887777778888887764
No 462
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=80.07 E-value=35 Score=28.74 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=69.0
Q ss_pred CCCCEEEEecccccH---HH-HHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGY---VI-TSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~---~~-~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~f 116 (256)
..+.+||-+|+|+-- .+ .-+.+++. .++-++-.|+.+-.-+ ....+.+|......+ .+|
T Consensus 60 P~nMrVlHlGAgSdkGvaPGt~VLrqwlP---~~ailvDnDi~d~vSD-----------a~~~~~~Dc~t~~~~---~k~ 122 (299)
T PF06460_consen 60 PHNMRVLHLGAGSDKGVAPGTAVLRQWLP---EDAILVDNDIRDYVSD-----------ADQSIVGDCRTYMPP---DKF 122 (299)
T ss_dssp -TT-EEEEES---TTSB-HHHHHHHHHS----TT-EEEEEESS--B-S-----------SSEEEES-GGGEEES---S-E
T ss_pred ccCcEEEEecccccCCcCCchHHHHHhCC---CCcEEEecchhhhccc-----------cCCceeccccccCCC---Ccc
Confidence 367899999988531 11 22344431 2567777787664311 126788898887654 699
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCC--cHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcCCcEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGEN--GRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKGYAAR 194 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g~~~~ 194 (256)
|+||++.= ..... ..+++. ...+...+..-+.+.|+-||.+++-.--.....++-+.+....+-..
T Consensus 123 DlIiSDmY-d~~~k-----------~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~~~F~~wt~ 190 (299)
T PF06460_consen 123 DLIISDMY-DGRTK-----------NCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELMGYFSWWTC 190 (299)
T ss_dssp EEEEE-----TTS------------SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHHTTEEEEEE
T ss_pred cEEEEecc-ccccc-----------ccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHHhhcccEEE
Confidence 99999742 10000 000100 01135566777888999999999854333334566666655544333
Q ss_pred EEEecCCCCccEEEEEEEe
Q 025211 195 IVVQRSTEEENLHIIKFWR 213 (256)
Q Consensus 195 ~~~~~~~~~~~~~l~~~~~ 213 (256)
..-..-......+++..-.
T Consensus 191 FcT~VNtSSSEaFLigiNY 209 (299)
T PF06460_consen 191 FCTAVNTSSSEAFLIGINY 209 (299)
T ss_dssp EEEGGGTTSS-EEEEEEEE
T ss_pred EecccCccccceeEEeeec
Confidence 3333333333344454433
No 463
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.99 E-value=13 Score=30.42 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=54.4
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------c
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------L 112 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~ 112 (256)
..+++||=.| |+|.++..+++.+.++ ++.|++++.+++.++.....+...+....++..|+.+... .. .
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQA--GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETE 83 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHh
Confidence 3568888888 6677788888887653 5689999999887766665554333334667777654311 10 1
Q ss_pred CCCccEEEECCCC
Q 025211 113 AGLVDVMVVNPPY 125 (256)
Q Consensus 113 ~~~fD~Ii~npP~ 125 (256)
.+.+|+++.+...
T Consensus 84 ~~~~d~li~~ag~ 96 (258)
T PRK06949 84 AGTIDILVNNSGV 96 (258)
T ss_pred cCCCCEEEECCCC
Confidence 2468999997654
No 464
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=79.85 E-value=8.4 Score=30.18 Aligned_cols=109 Identities=16% Similarity=0.108 Sum_probs=62.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
-.+++|.=+|+ |.++..+++.+. .-+++|++.|.+......... . .+...++.+.+ ...|+|+
T Consensus 34 l~g~tvgIiG~--G~IG~~vA~~l~--~fG~~V~~~d~~~~~~~~~~~----~----~~~~~~l~ell-----~~aDiv~ 96 (178)
T PF02826_consen 34 LRGKTVGIIGY--GRIGRAVARRLK--AFGMRVIGYDRSPKPEEGADE----F----GVEYVSLDELL-----AQADIVS 96 (178)
T ss_dssp STTSEEEEEST--SHHHHHHHHHHH--HTT-EEEEEESSCHHHHHHHH----T----TEEESSHHHHH-----HH-SEEE
T ss_pred cCCCEEEEEEE--cCCcCeEeeeee--cCCceeEEecccCChhhhccc----c----cceeeehhhhc-----chhhhhh
Confidence 36788888866 566666777766 347799999999876551111 1 23344555543 3589999
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMME 188 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~ 188 (256)
...|.......- +=......+|+|.+++=+..+.- ..+.+.+.+++
T Consensus 97 ~~~plt~~T~~l----------------------i~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 97 LHLPLTPETRGL----------------------INAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp E-SSSSTTTTTS----------------------BSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred hhhcccccccee----------------------eeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 988865432211 11233457888887775433221 34456666655
No 465
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=79.74 E-value=24 Score=26.60 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=52.5
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCC--HHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCC
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDIN--PYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAG 114 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~--~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~ 114 (256)
.||=.|++ +.++.++++.+.++ ....|+.+.-+ ....+.....+...+....+...|+.+... .. ..+
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEEECCC-CHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 45555655 56677788877665 34478888887 555666656666566555788888654421 11 136
Q ss_pred CccEEEECCCCCC
Q 025211 115 LVDVMVVNPPYVP 127 (256)
Q Consensus 115 ~fD~Ii~npP~~~ 127 (256)
.+|++|.|.....
T Consensus 80 ~ld~li~~ag~~~ 92 (167)
T PF00106_consen 80 PLDILINNAGIFS 92 (167)
T ss_dssp SESEEEEECSCTT
T ss_pred ccccccccccccc
Confidence 8999999887665
No 466
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=79.50 E-value=22 Score=31.16 Aligned_cols=97 Identities=23% Similarity=0.268 Sum_probs=55.1
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~f 116 (256)
.++.+||=.|+ |.++..+.+..... ++ .++++|.++...+.+++ .+.. .++.. ++.+.........+
T Consensus 185 ~~g~~vlI~g~--g~vG~~~~~la~~~--G~~~v~~~~~~~~k~~~~~~----~g~~-~~i~~~~~~~~~~v~~~~~~~~ 255 (365)
T cd08278 185 RPGSSIAVFGA--GAVGLAAVMAAKIA--GCTTIIAVDIVDSRLELAKE----LGAT-HVINPKEEDLVAAIREITGGGV 255 (365)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----cCCc-EEecCCCcCHHHHHHHHhCCCC
Confidence 46778888765 44444333333222 34 69999999887776654 2322 22221 22222222123569
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+-.-. ....+....+.|+++|+++.+.
T Consensus 256 d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 285 (365)
T cd08278 256 DYALDTTG---------------------------VPAVIEQAVDALAPRGTLALVG 285 (365)
T ss_pred cEEEECCC---------------------------CcHHHHHHHHHhccCCEEEEeC
Confidence 99986311 0234677788899999988754
No 467
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=79.45 E-value=3.4 Score=33.64 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=64.9
Q ss_pred ccccCCchHHHHHHHHHhhcccccCCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC-C
Q 025211 17 VYEPCDDSFALVDALLADRINLVEHHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN-V 95 (256)
Q Consensus 17 ~~~p~~~~~~l~~~l~~~~~~~~~~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~-~ 95 (256)
.-.|.+---.+++.+++.+. +.++...+|.--|.|..+..+.+. .++..+++.|-+|.+.+.|+....+.- -
T Consensus 21 d~~~~~HVPVm~devl~~ls---pv~g~sf~DmTfGagGHt~~ilqk----~se~k~yalDrDP~A~~La~~~s~el~~~ 93 (303)
T KOG2782|consen 21 DEVPSSHVPVMLDEVLDILS---PVRGRSFVDMTFGAGGHTSSILQK----HSELKNYALDRDPVARKLAHFHSDELMHP 93 (303)
T ss_pred ccccccCCceehhhHHHHcC---CCCCceEEEEeccCCcchHHHHHh----CcHhhhhhhccChHHHHHHHHhhHhhcch
Confidence 33444444456677777765 368999999999999887666665 788899999999999999887664221 1
Q ss_pred cceEEEcchhh---chh--hhcCCCccEEEECC
Q 025211 96 HADLINTDIAS---GLE--KRLAGLVDVMVVNP 123 (256)
Q Consensus 96 ~~~~~~~d~~~---~~~--~~~~~~fD~Ii~np 123 (256)
....+.+.+.. .+. ...+.++|-|+.+.
T Consensus 94 ~l~a~Lg~Fs~~~~l~~~~gl~~~~vDGiLmDl 126 (303)
T KOG2782|consen 94 TLKAVLGNFSYIKSLIADTGLLDVGVDGILMDL 126 (303)
T ss_pred hHHHHHhhhHHHHHHHHHhCCCcCCcceEEeec
Confidence 11222222211 111 12357889888864
No 468
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=79.28 E-value=25 Score=29.80 Aligned_cols=82 Identities=22% Similarity=0.212 Sum_probs=45.3
Q ss_pred ceEEEcchhhchhhhcCCCc-cEEEECCCCCCCCCcccccccchhhhcCC-CCcHHHHHHHHHHHhhccccCeEEEEEEe
Q 025211 97 ADLINTDIASGLEKRLAGLV-DVMVVNPPYVPTPEDEVGREGIASAWAGG-ENGRAVIDKILPSADKLLSKRGWLYLVTL 174 (256)
Q Consensus 97 ~~~~~~d~~~~~~~~~~~~f-D~Ii~npP~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 174 (256)
.++.++|+.+.... ..+= |+|.|+|||.+.+....- ...++ .........+++.+.++=...|+.++.+.
T Consensus 157 ~~i~~~df~~v~~~--a~~~~dfvY~DPPY~~~s~t~~f------~~Y~~~~f~~~~~~~La~~~~~l~~~~~i~~~~sn 228 (274)
T COG0338 157 ATIENGDFEEVLAD--ADSGDDFVYCDPPYLPLSATSNF------TAYGGNGFTEDQHLRLAEVLKELEGKRGISVLDSN 228 (274)
T ss_pred CeEEcCCHHHHHhh--ccCCCcEEEeCCCCCcccccccc------ccccCCCCChHHHHHHHHHHHhccccceEEEecCc
Confidence 48999999888653 2344 899999999986654211 11111 11222334444444443366677666443
Q ss_pred CCCCHHHHHHHHHH
Q 025211 175 TANDPSQICLQMME 188 (256)
Q Consensus 175 ~~~~~~~~~~~~~~ 188 (256)
. ......++.+.
T Consensus 229 ~--~~~~~~~ly~~ 240 (274)
T COG0338 229 S--DTEETRELYKQ 240 (274)
T ss_pred c--chHHHHHHHHh
Confidence 3 33455555543
No 469
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.26 E-value=35 Score=28.34 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=48.1
Q ss_pred CCCEEEEecccc-cHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--c
Q 025211 42 HPVLCMEVGCGS-GYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--L 112 (256)
Q Consensus 42 ~~~~VLDlGcG~-G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~ 112 (256)
.++.+|=.|++. +.++.++++.+.+. +++|+.++.+....+.+++.....+ ...++..|+.+... .. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~--G~~vil~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHRE--GAELAFTYQNDKLKGRVEEFAAQLG-SDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEEEecchhHHHHHHHHHhccC-CceEeecCCCCHHHHHHHHHHHHhh
Confidence 457888888876 47787888887654 5678888766432222222211111 12456667654321 10 1
Q ss_pred CCCccEEEECCCCC
Q 025211 113 AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ~~~fD~Ii~npP~~ 126 (256)
-+++|++|.|.-+.
T Consensus 82 ~g~iD~linnAg~~ 95 (262)
T PRK07984 82 WPKFDGFVHSIGFA 95 (262)
T ss_pred cCCCCEEEECCccC
Confidence 25799999988654
No 470
>PRK08589 short chain dehydrogenase; Validated
Probab=79.25 E-value=35 Score=28.33 Aligned_cols=81 Identities=25% Similarity=0.260 Sum_probs=49.6
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
+++++|=.|++. .++.++++.+.++ +++|++++.+ ...+...+.+...+.+..++..|+.+... .. .-
T Consensus 5 ~~k~vlItGas~-gIG~aia~~l~~~--G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGAST-GIGQASAIALAQE--GAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHC--CCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 456777777654 4566777776643 6789999988 44444444444333334667777654421 10 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|++|.|.-+.
T Consensus 81 g~id~li~~Ag~~ 93 (272)
T PRK08589 81 GRVDVLFNNAGVD 93 (272)
T ss_pred CCcCEEEECCCCC
Confidence 5689999987553
No 471
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.20 E-value=12 Score=30.55 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=54.5
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh--hh------cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE--KR------LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~------~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ +++|+.++-+++..+.+.+.+...+....++..|+.+... .. .-
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFARE--GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 4678888885 566677778777654 5689999998877766666665544444677777754321 10 01
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+++|+|+.+.-+.
T Consensus 83 g~id~li~~ag~~ 95 (253)
T PRK06172 83 GRLDYAFNNAGIE 95 (253)
T ss_pred CCCCEEEECCCCC
Confidence 4689999987543
No 472
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=79.19 E-value=12 Score=30.59 Aligned_cols=81 Identities=20% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++..+++.+.++ ++.|+.++-+++..+...+.+...+....++..|+.+... .. .-
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGA--GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 5788888884 666677778776643 6799999999877766666555544444677777654321 10 12
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|.++.+.-.
T Consensus 87 ~~id~vi~~ag~ 98 (256)
T PRK06124 87 GRLDILVNNVGA 98 (256)
T ss_pred CCCCEEEECCCC
Confidence 568999988654
No 473
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=78.97 E-value=24 Score=29.80 Aligned_cols=108 Identities=12% Similarity=0.122 Sum_probs=58.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc---eEEE-cchhhchhhhcCCCccEEE
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA---DLIN-TDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~---~~~~-~d~~~~~~~~~~~~fD~Ii 120 (256)
+|+=+|+| .++..++..|.+. +..|+.++-+++.++..++ .+... .... ......... ...+|+|+
T Consensus 2 ~I~IiG~G--~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~--~~~~d~vi 71 (304)
T PRK06522 2 KIAILGAG--AIGGLFGAALAQA--GHDVTLVARRGAHLDALNE----NGLRLEDGEITVPVLAADDPAE--LGPQDLVI 71 (304)
T ss_pred EEEEECCC--HHHHHHHHHHHhC--CCeEEEEECChHHHHHHHH----cCCcccCCceeecccCCCChhH--cCCCCEEE
Confidence 35556665 4444456655533 4589999987776655443 23211 1100 000111111 15789998
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHH
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQM 186 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 186 (256)
..-|.+ ....+++.+...+.++..++....+....+.+.+.+
T Consensus 72 la~k~~------------------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~ 113 (304)
T PRK06522 72 LAVKAY------------------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYI 113 (304)
T ss_pred Eecccc------------------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhc
Confidence 753321 146778888888888877777666555444444444
No 474
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=78.92 E-value=27 Score=30.18 Aligned_cols=96 Identities=23% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcceEEEc---chhhchhhhcCCCcc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHADLINT---DIASGLEKRLAGLVD 117 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~fD 117 (256)
++.+||-.|+ |.++..+.+..... ++ .|++++.+++..+.+++ .+.. .++.. +..+.......+.+|
T Consensus 175 ~~~~vlI~g~--g~vg~~~~~~a~~~--G~~~v~~~~~~~~~~~~~~~----~g~~-~~~~~~~~~~~~~~~~~~~~~~d 245 (350)
T cd08240 175 ADEPVVIIGA--GGLGLMALALLKAL--GPANIIVVDIDEAKLEAAKA----AGAD-VVVNGSDPDAAKRIIKAAGGGVD 245 (350)
T ss_pred CCCEEEEECC--cHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHH----hCCc-EEecCCCccHHHHHHHHhCCCCc
Confidence 5678888864 55555555544322 44 78899988887776643 2332 22221 111222222223699
Q ss_pred EEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 118 VMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 118 ~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
+++.... ....+..+.+.|+++|+++.+.
T Consensus 246 ~vid~~g---------------------------~~~~~~~~~~~l~~~g~~v~~g 274 (350)
T cd08240 246 AVIDFVN---------------------------NSATASLAFDILAKGGKLVLVG 274 (350)
T ss_pred EEEECCC---------------------------CHHHHHHHHHHhhcCCeEEEEC
Confidence 9987422 1345777888999999988753
No 475
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=78.50 E-value=30 Score=29.81 Aligned_cols=97 Identities=21% Similarity=0.247 Sum_probs=52.7
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCc-eEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGV-QYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~-~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
.++.+||-.|+ |.++..+.+.+.. .++ .+++++-+++..+.+++ .+.+. .....++. ..... ..+.+
T Consensus 162 ~~g~~vlV~g~--g~vg~~~~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~~~~~v 232 (341)
T cd05281 162 VSGKSVLITGC--GPIGLMAIAVAKA--AGASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVTDGTGV 232 (341)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHcCCCCC
Confidence 46677777665 4444444443332 244 68888777766665543 23321 11111222 11111 22469
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+|+.+-. .......+.+.|+++|+++.+.
T Consensus 233 d~vld~~g---------------------------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 233 DVVLEMSG---------------------------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHHhccCCEEEEEc
Confidence 99987421 1244667778999999988754
No 476
>PRK08278 short chain dehydrogenase; Provisional
Probab=78.42 E-value=37 Score=28.27 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHH-------HHHHHHHHHHcCCcceEEEcchhhchh--hhc
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-------VEVTRKTLEAHNVHADLINTDIASGLE--KRL 112 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~-------i~~a~~~~~~~~~~~~~~~~d~~~~~~--~~~ 112 (256)
.++++|=.|+ +|.++..+++.+.++ ++.|+.++.+... ++...+.+...+....++..|+.+... ...
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 81 (273)
T PRK08278 5 SGKTLFITGA-SRGIGLAIALRAARD--GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAV 81 (273)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHC--CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHH
Confidence 4567887777 556677788877654 5688888866431 233333333334344666777654421 111
Q ss_pred ------CCCccEEEECCCCC
Q 025211 113 ------AGLVDVMVVNPPYV 126 (256)
Q Consensus 113 ------~~~fD~Ii~npP~~ 126 (256)
-+++|++|.+..+.
T Consensus 82 ~~~~~~~g~id~li~~ag~~ 101 (273)
T PRK08278 82 AKAVERFGGIDICVNNASAI 101 (273)
T ss_pred HHHHHHhCCCCEEEECCCCc
Confidence 14799999987553
No 477
>PLN02780 ketoreductase/ oxidoreductase
Probab=78.31 E-value=43 Score=28.83 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=49.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcC--CcceEEEcchhhch----h---h-h
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHN--VHADLINTDIASGL----E---K-R 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~--~~~~~~~~d~~~~~----~---~-~ 111 (256)
.++.+|=.|+ +|.++.++++.+.++ +++|+.++.+++.++...+.+.... .....+..|+.+.. . . .
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~--G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~ 128 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARK--GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETI 128 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHh
Confidence 4678887885 556677788877654 5689999999988877666665431 22345555654211 1 1 1
Q ss_pred cCCCccEEEECCCC
Q 025211 112 LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 ~~~~fD~Ii~npP~ 125 (256)
.....|+++.|..+
T Consensus 129 ~~~didilVnnAG~ 142 (320)
T PLN02780 129 EGLDVGVLINNVGV 142 (320)
T ss_pred cCCCccEEEEecCc
Confidence 11235588887654
No 478
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=78.30 E-value=17 Score=34.70 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=46.1
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEE
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVV 121 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~ 121 (256)
.+|+=+ |.|.++..+++.+.++ +..++.+|.|++.++.+++. ...++.+|..+.. ....-++.|++++
T Consensus 401 ~~vII~--G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 401 PRVIIA--GFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKF------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred CcEEEE--ecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhc------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 455554 5555666677777643 45799999999999888652 2378889987653 2222357888887
No 479
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=77.93 E-value=4 Score=36.33 Aligned_cols=71 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH
Q 025211 78 INPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP 157 (256)
Q Consensus 78 ~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 157 (256)
+.++..+..+.++ -..+++++++.+.+....++++|..+.---.-..++.. ....++
T Consensus 262 L~~e~f~~lr~~~----drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~-------------------~~~~~~ 318 (380)
T PF11899_consen 262 LRPENFEALRARL----DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQ-------------------LNEEWQ 318 (380)
T ss_pred hcHhHHHHHhcCC----CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHH-------------------HHHHHH
Q ss_pred HHhhccccCeEEEE
Q 025211 158 SADKLLSKRGWLYL 171 (256)
Q Consensus 158 ~~~~~LkpgG~l~~ 171 (256)
.+.+.++|||++++
T Consensus 319 ~l~~~~~pgaRV~~ 332 (380)
T PF11899_consen 319 ELARTARPGARVLW 332 (380)
T ss_pred HHHHHhCCCCEEEE
No 480
>PRK07814 short chain dehydrogenase; Provisional
Probab=77.88 E-value=14 Score=30.48 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh--hc------C
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK--RL------A 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~--~~------~ 113 (256)
++++||=.| |+|.++..+++.+.++ +++|++++.+++..+...+.+...+....++..|+.+...- .. -
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEA--GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567888888 4677788888877653 67999999988776665555543333346667776554210 00 1
Q ss_pred CCccEEEECCC
Q 025211 114 GLVDVMVVNPP 124 (256)
Q Consensus 114 ~~fD~Ii~npP 124 (256)
+++|+|+.+.-
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 47899998754
No 481
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=77.71 E-value=30 Score=29.73 Aligned_cols=112 Identities=21% Similarity=0.209 Sum_probs=55.9
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHH-HHHHHHHHcCCc--ceEEEcchhhchhhhcCCCccEEEE
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVE-VTRKTLEAHNVH--ADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~-~a~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
+|.=+|+| .++..++..+...+....+..+|.+++..+ .+.+........ ..+...|..+ -...|+|+.
T Consensus 2 kI~IIGaG--~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~------l~~aDiVii 73 (308)
T cd05292 2 KVAIVGAG--FVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD------CKGADVVVI 73 (308)
T ss_pred EEEEECCC--HHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH------hCCCCEEEE
Confidence 46667775 455445555544333357999999987654 333322111111 1233334322 146799998
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
..+....+... ...+. ......+..+.+.+.+ ..|+|++++++
T Consensus 74 ta~~~~~~~~~------r~dl~--~~n~~i~~~~~~~l~~-~~~~giiiv~t 116 (308)
T cd05292 74 TAGANQKPGET------RLDLL--KRNVAIFKEIIPQILK-YAPDAILLVVT 116 (308)
T ss_pred ccCCCCCCCCC------HHHHH--HHHHHHHHHHHHHHHH-HCCCeEEEEec
Confidence 76543222111 00000 0012234555566555 45889988865
No 482
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=77.61 E-value=31 Score=29.63 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=53.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCce-EEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhh-cCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQ-YIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKR-LAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~-v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~-~~~~f 116 (256)
.++.+|+-.|+ |.++..+.+.... .++. |++++.++...+.+++ .+... .....++.+.+... ....+
T Consensus 160 ~~g~~vlI~~~--g~vg~~a~~la~~--~G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~~~~~~ 231 (340)
T TIGR00692 160 ISGKSVLVTGA--GPIGLMAIAVAKA--SGAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLTDGEGV 231 (340)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHH--cCCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhcCCCCC
Confidence 35677766554 4444444333322 2455 8888888776665543 23321 11122222222221 12468
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+++..-. -...+..+.+.|+++|+++.+.
T Consensus 232 d~vld~~g---------------------------~~~~~~~~~~~l~~~g~~v~~g 261 (340)
T TIGR00692 232 DVFLEMSG---------------------------APKALEQGLQAVTPGGRVSLLG 261 (340)
T ss_pred CEEEECCC---------------------------CHHHHHHHHHhhcCCCEEEEEc
Confidence 99986311 1245677788899999988754
No 483
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=77.60 E-value=33 Score=29.58 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=67.0
Q ss_pred CCCCEEEEecc--cccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcc--eEEEcchhhchhhhcCCCc
Q 025211 41 HHPVLCMEVGC--GSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHA--DLINTDIASGLEKRLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGc--G~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~f 116 (256)
+++.+|+=-++ +.|...-.+++. .+++|+|+=-+++-.+.+.+. .|.+. +....|+.+.+....+..+
T Consensus 149 k~GetvvVSaAaGaVGsvvgQiAKl-----kG~rVVGiaGg~eK~~~l~~~---lGfD~~idyk~~d~~~~L~~a~P~GI 220 (340)
T COG2130 149 KAGETVVVSAAAGAVGSVVGQIAKL-----KGCRVVGIAGGAEKCDFLTEE---LGFDAGIDYKAEDFAQALKEACPKGI 220 (340)
T ss_pred CCCCEEEEEecccccchHHHHHHHh-----hCCeEEEecCCHHHHHHHHHh---cCCceeeecCcccHHHHHHHHCCCCe
Confidence 45666655443 356666666664 478999999999988887763 34443 5666688777776667889
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
|+.+-|-- ..+++.+...|+..+++.++-
T Consensus 221 DvyfeNVG----------------------------g~v~DAv~~~ln~~aRi~~CG 249 (340)
T COG2130 221 DVYFENVG----------------------------GEVLDAVLPLLNLFARIPVCG 249 (340)
T ss_pred EEEEEcCC----------------------------chHHHHHHHhhccccceeeee
Confidence 99988621 255677777888888888743
No 484
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.23 E-value=44 Score=28.31 Aligned_cols=98 Identities=16% Similarity=0.188 Sum_probs=55.9
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHc-------CC-cc--------eEE-Ecchhh
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAH-------NV-HA--------DLI-NTDIAS 106 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~-------~~-~~--------~~~-~~d~~~ 106 (256)
.+|.=+|+|+ ++..++..+.. .+..|+..|.+++.++.+.+.+..+ +. .. .+. ..|. +
T Consensus 5 ~kI~vIGaG~--mG~~iA~~la~--~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~ 79 (292)
T PRK07530 5 KKVGVIGAGQ--MGNGIAHVCAL--AGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDL-E 79 (292)
T ss_pred CEEEEECCcH--HHHHHHHHHHH--CCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCH-H
Confidence 4566666654 44444555443 3568999999999988766544322 21 10 111 1222 1
Q ss_pred chhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 107 GLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 107 ~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
. -...|+|+..-|= .......+++.+...++++.+++..+
T Consensus 80 ---~--~~~aD~Vieavpe----------------------~~~~k~~~~~~l~~~~~~~~ii~s~t 119 (292)
T PRK07530 80 ---D--LADCDLVIEAATE----------------------DETVKRKIFAQLCPVLKPEAILATNT 119 (292)
T ss_pred ---H--hcCCCEEEEcCcC----------------------CHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1 1467999885431 12234577788888889988766433
No 485
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=77.07 E-value=11 Score=33.13 Aligned_cols=55 Identities=11% Similarity=0.035 Sum_probs=42.3
Q ss_pred CCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHHHHHcC
Q 025211 114 GLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQMMEKG 190 (256)
Q Consensus 114 ~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g 190 (256)
..+|.|+.-.| +.....+..|..+...|+|||.++++.....-.+.+.+.++.++
T Consensus 75 ~~~d~~~~~~p----------------------k~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 75 ADCDTLIYYWP----------------------KNKQEAQFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred CCCCEEEEECC----------------------CCHHHHHHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhc
Confidence 57999998655 22334677889999999999999998877776667777777664
No 486
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.04 E-value=17 Score=31.49 Aligned_cols=103 Identities=17% Similarity=0.097 Sum_probs=55.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
++.+|.=.|+| .+++++++-... ....+|+|+|++++-.+.|++.-.-.-++-.=....+.+.+.+.-++.+|.-+-
T Consensus 192 ~GstvAVfGLG--~VGLav~~Gaka-~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfE 268 (375)
T KOG0022|consen 192 PGSTVAVFGLG--GVGLAVAMGAKA-AGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFE 268 (375)
T ss_pred CCCEEEEEecc--hHHHHHHHhHHh-cCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEE
Confidence 44555555444 444444443322 234689999999999998876422111111100112444444545677787663
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccC-eEEEEEEe
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKR-GWLYLVTL 174 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~ 174 (256)
.- + ....+.++....+.| |.-+++-.
T Consensus 269 c~--------------------G-------~~~~m~~al~s~h~GwG~sv~iGv 295 (375)
T KOG0022|consen 269 CI--------------------G-------NVSTMRAALESCHKGWGKSVVIGV 295 (375)
T ss_pred ec--------------------C-------CHHHHHHHHHHhhcCCCeEEEEEe
Confidence 10 0 134556666666777 88777554
No 487
>PRK08177 short chain dehydrogenase; Provisional
Probab=76.84 E-value=17 Score=29.23 Aligned_cols=75 Identities=17% Similarity=0.095 Sum_probs=44.6
Q ss_pred CEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch------hhhcCCCcc
Q 025211 44 VLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL------EKRLAGLVD 117 (256)
Q Consensus 44 ~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~------~~~~~~~fD 117 (256)
++|+=.|+ +|.++..+++.+.++ +++|++++.++...+.+++ .+ ...+...|+.+.. .....+.+|
T Consensus 2 k~vlItG~-sg~iG~~la~~l~~~--G~~V~~~~r~~~~~~~~~~----~~-~~~~~~~D~~d~~~~~~~~~~~~~~~id 73 (225)
T PRK08177 2 RTALIIGA-SRGLGLGLVDRLLER--GWQVTATVRGPQQDTALQA----LP-GVHIEKLDMNDPASLDQLLQRLQGQRFD 73 (225)
T ss_pred CEEEEeCC-CchHHHHHHHHHHhC--CCEEEEEeCCCcchHHHHh----cc-ccceEEcCCCCHHHHHHHHHHhhcCCCC
Confidence 34665555 567777778877654 5689999988765443322 11 2255556654431 112235799
Q ss_pred EEEECCCCC
Q 025211 118 VMVVNPPYV 126 (256)
Q Consensus 118 ~Ii~npP~~ 126 (256)
+|+.|....
T Consensus 74 ~vi~~ag~~ 82 (225)
T PRK08177 74 LLFVNAGIS 82 (225)
T ss_pred EEEEcCccc
Confidence 999987543
No 488
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=76.69 E-value=41 Score=27.63 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=49.6
Q ss_pred EEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cCCCc
Q 025211 45 LCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LAGLV 116 (256)
Q Consensus 45 ~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~~~f 116 (256)
+||=.|++ |.++.++++.+.++ ++.|+.++.++..++.+.+.+...+ ...++..|+.+... .. .-+.+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKK--GARVVISSRNEENLEKALKELKEYG-EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 46666754 55677788877654 5689999999887776666554433 33567777654311 10 12579
Q ss_pred cEEEECCCC
Q 025211 117 DVMVVNPPY 125 (256)
Q Consensus 117 D~Ii~npP~ 125 (256)
|++|.|.-.
T Consensus 78 d~li~naG~ 86 (259)
T PRK08340 78 DALVWNAGN 86 (259)
T ss_pred CEEEECCCC
Confidence 999988654
No 489
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=76.67 E-value=31 Score=27.69 Aligned_cols=109 Identities=17% Similarity=0.119 Sum_probs=64.6
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhh----hcCCCc
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEK----RLAGLV 116 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~f 116 (256)
..+..|+|.|.--|..++..|.++.+.+....|.++|++-...+-+... .....+++++..+...- ..++.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----~p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----VPDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----CCCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 3689999999999988888888765545557899999986554332221 12337888876554211 111222
Q ss_pred cEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEE
Q 025211 117 DVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVT 173 (256)
Q Consensus 117 D~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 173 (256)
--|+.. .+.....+-...-++....+|..|-++++..
T Consensus 144 ~kIfvi--------------------lDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 144 PKIFVI--------------------LDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred CcEEEE--------------------ecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 222221 0111122223455666778888888888743
No 490
>PRK07904 short chain dehydrogenase; Provisional
Probab=76.67 E-value=24 Score=29.06 Aligned_cols=84 Identities=12% Similarity=0.122 Sum_probs=52.0
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHH-HHHHHHHHHHcCC-cceEEEcchhhchh------hh-
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYA-VEVTRKTLEAHNV-HADLINTDIASGLE------KR- 111 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~-i~~a~~~~~~~~~-~~~~~~~d~~~~~~------~~- 111 (256)
+.+++||=.|+ +|.++.++++.+.+++ +++|+.++-+++. .+.+.+.+...+- ...++..|+.+... ..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~g-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNA-PARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcC-CCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence 35678888888 4566777887765432 3688898887664 5554444544332 34677777654321 11
Q ss_pred cCCCccEEEECCCCC
Q 025211 112 LAGLVDVMVVNPPYV 126 (256)
Q Consensus 112 ~~~~fD~Ii~npP~~ 126 (256)
..+.+|+++.|....
T Consensus 84 ~~g~id~li~~ag~~ 98 (253)
T PRK07904 84 AGGDVDVAIVAFGLL 98 (253)
T ss_pred hcCCCCEEEEeeecC
Confidence 125799999876543
No 491
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=76.50 E-value=58 Score=29.34 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=54.8
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEE
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMV 120 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii 120 (256)
..+++|+=+|+|.= +..+++.+. .-+++|+++|.++.....+.. .|. .+ .+..+.. ...|+++
T Consensus 193 l~Gk~VvViG~G~I--G~~vA~~ak--~~Ga~ViV~d~dp~r~~~A~~----~G~--~v--~~leeal-----~~aDVVI 255 (406)
T TIGR00936 193 IAGKTVVVAGYGWC--GKGIAMRAR--GMGARVIVTEVDPIRALEAAM----DGF--RV--MTMEEAA-----KIGDIFI 255 (406)
T ss_pred CCcCEEEEECCCHH--HHHHHHHHh--hCcCEEEEEeCChhhHHHHHh----cCC--Ee--CCHHHHH-----hcCCEEE
Confidence 46899999998863 333444444 336789999999865433322 232 11 2222221 3579988
Q ss_pred ECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHH-HHhhccccCeEEEEEEeC
Q 025211 121 VNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILP-SADKLLSKRGWLYLVTLT 175 (256)
Q Consensus 121 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~LkpgG~l~~~~~~ 175 (256)
+... ...++. .....+|+|++++.+...
T Consensus 256 taTG---------------------------~~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 256 TATG---------------------------NKDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred ECCC---------------------------CHHHHHHHHHhcCCCCcEEEEECCC
Confidence 7421 134444 467789999999986553
No 492
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=76.47 E-value=39 Score=27.36 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=49.0
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|++ |.++..+++.+.++ ++.|++++-++. +.+.+.+...+....++..|+.+... .. ..
T Consensus 4 ~~k~vlItGas-~gIG~~ia~~l~~~--G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 4 EGKVALVTGAN-TGLGQGIAVGLAEA--GADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHC--CCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788888885 45677788877654 568999887652 23333333333334667777654421 00 12
Q ss_pred CCccEEEECCCCC
Q 025211 114 GLVDVMVVNPPYV 126 (256)
Q Consensus 114 ~~fD~Ii~npP~~ 126 (256)
+.+|.+|.+.-+.
T Consensus 79 ~~~d~li~~ag~~ 91 (248)
T TIGR01832 79 GHIDILVNNAGII 91 (248)
T ss_pred CCCCEEEECCCCC
Confidence 5689999987554
No 493
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=76.44 E-value=2.8 Score=39.26 Aligned_cols=107 Identities=18% Similarity=0.247 Sum_probs=60.5
Q ss_pred CCCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhc-----hhh-hcCC
Q 025211 41 HHPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASG-----LEK-RLAG 114 (256)
Q Consensus 41 ~~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~-----~~~-~~~~ 114 (256)
.+...|||+||..|.+..-+++.+. .+.-|+|+|+-|--. .. ++.-++.|+... +.. ...-
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~p---v~slivGvDl~pikp--~~--------~c~t~v~dIttd~cr~~l~k~l~t~ 109 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMP---VGSLIVGVDLVPIKP--IP--------NCDTLVEDITTDECRSKLRKILKTW 109 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCC---CCceEEEeeeeeccc--CC--------ccchhhhhhhHHHHHHHHHHHHHhC
Confidence 4788999999999999877777653 467899999876321 00 001112222111 111 1123
Q ss_pred CccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEE
Q 025211 115 LVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLY 170 (256)
Q Consensus 115 ~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 170 (256)
+.|+|+.+.. +.++..|...++... ......+.-+...|..||.++
T Consensus 110 ~advVLhDga------pnVg~~w~~DA~~q~----~L~l~al~LA~~~l~~~g~fv 155 (780)
T KOG1098|consen 110 KADVVLHDGA------PNVGGNWVQDAFQQA----CLTLRALKLATEFLAKGGTFV 155 (780)
T ss_pred CCcEEeecCC------CccchhHHHHHHHhh----HHHHHHHHHHHHHHHhcCccc
Confidence 5699987542 233334443333221 122344556677899999954
No 494
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.91 E-value=17 Score=30.08 Aligned_cols=80 Identities=15% Similarity=0.163 Sum_probs=51.2
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
++++||=.| |+|.++..+++.+.. .++.|++++.+++..+...+.+...+....++..|+.+... .. ..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~--~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR--AGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 567888887 567777778877764 36789999998877665544444333333566777654321 10 12
Q ss_pred CCccEEEECCC
Q 025211 114 GLVDVMVVNPP 124 (256)
Q Consensus 114 ~~fD~Ii~npP 124 (256)
+.+|++|.|..
T Consensus 85 ~~iD~vi~~ag 95 (264)
T PRK07576 85 GPIDVLVSGAA 95 (264)
T ss_pred CCCCEEEECCC
Confidence 46899998763
No 495
>PRK10904 DNA adenine methylase; Provisional
Probab=75.88 E-value=22 Score=30.05 Aligned_cols=81 Identities=12% Similarity=0.093 Sum_probs=43.7
Q ss_pred eEEEcchhhchhhhcCCCccEEEECCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC
Q 025211 98 DLINTDIASGLEKRLAGLVDVMVVNPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN 177 (256)
Q Consensus 98 ~~~~~d~~~~~~~~~~~~fD~Ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (256)
.+.+.|+.+.+... ..=|+|.++|||........ .. ......-+.+...++.+.+..+-..||.++++..
T Consensus 159 ~i~~~Df~~~i~~~--~~~~fvYlDPPY~~~~~~~~--f~---~y~~~~f~~~dh~~La~~l~~l~~~~~k~ilS~~--- 228 (271)
T PRK10904 159 FFYCESYADSMARA--DKGSVVYCDPPYAPLSATAN--FT---AYHTNSFSLEQQAHLAEIAEGLVERHIPVLISNH--- 228 (271)
T ss_pred EEEECCHHHHHhhc--CCCcEEEECCCCCCCCCCCC--Cc---CcccCCCCHHHHHHHHHHHHHHHhCCCEEEEEeC---
Confidence 56667776665432 34589999999975432210 00 0001112233455555555554456778877432
Q ss_pred CHHHHHHHHHH
Q 025211 178 DPSQICLQMME 188 (256)
Q Consensus 178 ~~~~~~~~~~~ 188 (256)
....+.+++..
T Consensus 229 d~~~i~elY~~ 239 (271)
T PRK10904 229 DTMLTREWYQR 239 (271)
T ss_pred CCHHHHHHHcC
Confidence 34567777753
No 496
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=75.72 E-value=15 Score=32.59 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=45.5
Q ss_pred EEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhch--hhhcCCCccEEEEC-
Q 025211 46 CMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGL--EKRLAGLVDVMVVN- 122 (256)
Q Consensus 46 VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~fD~Ii~n- 122 (256)
|+=+|+ |.++..++..|.+..+..+|+..|.+.+.++...+.+ .+........|+.+.. .... ...|+||..
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~-~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELL-RGCDVVINCA 75 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHH-TTSSEEEE-S
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHH-hcCCEEEECC
Confidence 455777 7888888888877654448999999998876654433 3334477778876543 2222 445999954
Q ss_pred CCC
Q 025211 123 PPY 125 (256)
Q Consensus 123 pP~ 125 (256)
|||
T Consensus 76 gp~ 78 (386)
T PF03435_consen 76 GPF 78 (386)
T ss_dssp SGG
T ss_pred ccc
Confidence 555
No 497
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=75.62 E-value=4.8 Score=34.65 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhccccCeEEEEEEeCCCCHHHHHHH-HHH
Q 025211 149 RAVIDKILPSADKLLSKRGWLYLVTLTANDPSQICLQ-MME 188 (256)
Q Consensus 149 ~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~ 188 (256)
+..+..+|..+.++|+|||++++++... .++.+.+. +.+
T Consensus 216 L~~L~~~L~~~~~~L~~gGrl~VISfHS-LEDRiVK~~f~~ 255 (305)
T TIGR00006 216 LEELEEALQFAPNLLAPGGRLSIISFHS-LEDRIVKNFFRE 255 (305)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCc-HHHHHHHHHHHH
Confidence 4467888999999999999999977533 23334443 544
No 498
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=75.61 E-value=16 Score=31.39 Aligned_cols=81 Identities=20% Similarity=0.101 Sum_probs=50.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh--cC
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--LA 113 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--~~ 113 (256)
.+++||=.|+ +|.++.++++.+.++ +++|+.++-++...+.+.+.+...+....++..|+.+... .. ..
T Consensus 5 ~~k~vlVTGa-s~gIG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGA-SSGVGLYAAKALAKR--GWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4677887775 566777888877654 5689999988776655544443222233667777654421 10 12
Q ss_pred CCccEEEECCCC
Q 025211 114 GLVDVMVVNPPY 125 (256)
Q Consensus 114 ~~fD~Ii~npP~ 125 (256)
+++|++|.|.-.
T Consensus 82 ~~iD~li~nAg~ 93 (322)
T PRK07453 82 KPLDALVCNAAV 93 (322)
T ss_pred CCccEEEECCcc
Confidence 468999998654
No 499
>PRK12746 short chain dehydrogenase; Provisional
Probab=75.52 E-value=42 Score=27.27 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=46.9
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEE-eCCHHHHHHHHHHHHHcCCcceEEEcchhhchh------hh---
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIAT-DINPYAVEVTRKTLEAHNVHADLINTDIASGLE------KR--- 111 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~gi-D~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~------~~--- 111 (256)
.+++|+=.| |+|.++.++++.+.++ ++.+..+ .-+.+..+.....+...+....++..|+.+... ..
T Consensus 5 ~~~~ilItG-asg~iG~~la~~l~~~--G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 5 DGKVALVTG-ASRGIGRAIAMRLAND--GALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 357788777 4788888888887654 4566654 344444333333333223334677778765421 00
Q ss_pred -----cCCCccEEEECCCC
Q 025211 112 -----LAGLVDVMVVNPPY 125 (256)
Q Consensus 112 -----~~~~fD~Ii~npP~ 125 (256)
.....|+|+.++-+
T Consensus 82 ~~~~~~~~~id~vi~~ag~ 100 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGI 100 (254)
T ss_pred hccccCCCCccEEEECCCC
Confidence 01368999988744
No 500
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=75.41 E-value=42 Score=29.23 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=60.8
Q ss_pred CCCEEEEecccccHHHHHHHHHhcccCCCceEEEEeCCHHHHHHHHHHHHHcCCcceEEEcchhhchhhhcCCCccEEEE
Q 025211 42 HPVLCMEVGCGSGYVITSLALMLGQEVPGVQYIATDINPYAVEVTRKTLEAHNVHADLINTDIASGLEKRLAGLVDVMVV 121 (256)
Q Consensus 42 ~~~~VLDlGcG~G~~~~~l~~~l~~~~~~~~v~giD~~~~~i~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~Ii~ 121 (256)
.+++|.=+|+ |.++..+++.+.. .+.+|++.|.++..... .. . ...++.+.+ ...|+|+.
T Consensus 145 ~g~~VgIIG~--G~IG~~vA~~L~~--~G~~V~~~d~~~~~~~~---~~-------~-~~~~l~ell-----~~aDiVil 204 (330)
T PRK12480 145 KNMTVAIIGT--GRIGAATAKIYAG--FGATITAYDAYPNKDLD---FL-------T-YKDSVKEAI-----KDADIISL 204 (330)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHh--CCCEEEEEeCChhHhhh---hh-------h-ccCCHHHHH-----hcCCEEEE
Confidence 3456666655 5566667777653 46799999988753211 00 1 112332221 46799999
Q ss_pred CCCCCCCCCcccccccchhhhcCCCCcHHHHHHHHHHHhhccccCeEEEEEEeCCC-CHHHHHHHHHHc
Q 025211 122 NPPYVPTPEDEVGREGIASAWAGGENGRAVIDKILPSADKLLSKRGWLYLVTLTAN-DPSQICLQMMEK 189 (256)
Q Consensus 122 npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~~~~ 189 (256)
..|... ....-+.......+|+|.+++-+..+.- ....+.+.+.+-
T Consensus 205 ~lP~t~----------------------~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g 251 (330)
T PRK12480 205 HVPANK----------------------ESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG 251 (330)
T ss_pred eCCCcH----------------------HHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence 877531 1223445667788999887776544332 345566666643
Done!