BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025213
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana
GN=At2g31440 PE=2 SV=2
Length = 250
Score = 355 bits (912), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 172/215 (80%), Positives = 194/215 (90%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
MTVAAGIGYAL+ALGPSLSLFV+VIS+KPFLILTVLSSTLLWL+SLI+LSG+WR FLPLK
Sbjct: 1 MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLK 60
Query: 61 STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALAG 120
+ WWP+ALL+I+SV FQEGLR LFWKVYKRLED LD+FADR+ +PRLFLTDK+QIALAG
Sbjct: 61 ANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAG 120
Query: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFN 180
GLGHGVAHAVFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF
Sbjct: 121 GLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFE 180
Query: 181 GYAEGNTTDQYFVPVVHLVAGMVVKSAFARCFCLL 215
GYA+GN DQ VPV+HL AGM+ FA C++
Sbjct: 181 GYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVI 215
>sp|Q9VQG2|APH1_DROME Gamma-secretase subunit Aph-1 OS=Drosophila melanogaster GN=aph-1
PE=1 SV=1
Length = 238
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 102/204 (50%), Gaps = 12/204 (5%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
MT+ G IA GP +LFV I+ P I+ ++++ WL+SL++ S +W A +PLK
Sbjct: 1 MTLPEFFGCTFIAFGPPFALFVFTIANDPVRIIILIAAAFFWLLSLLISS-LWYALIPLK 59
Query: 61 STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQI-ALA 119
A ++ SV FQE R + +++ + E L A A+ +TD I A
Sbjct: 60 EF----LAFGVVFSVCFQEAFRYIIYRILRSTEQGLHAVAEDTR-----VTDNKHILAYV 110
Query: 120 GGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAF 179
GLG G+ +F +++L GP T + ++ FF+ SA AL+ + +HTF VI F
Sbjct: 111 SGLGFGIISGMFALVNVLADMSGPGTMGLKGGTEL-FFVTSAAQALSIILLHTFWSVIFF 169
Query: 180 NGYAEGNTTDQYFVPVVHLVAGMV 203
N + N +V HL ++
Sbjct: 170 NAFDTNNYIHIGYVVFSHLFVSLI 193
>sp|Q8WW43|APH1B_HUMAN Gamma-secretase subunit APH-1B OS=Homo sapiens GN=APH1B PE=1 SV=3
Length = 257
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
MT A G A IA GP+L+L+V I+ +P I+ +++ WL+SL++ S +W R +
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60
Query: 58 PLKSTTWWPFALLIIS--SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
K + L+ + SV QE R ++K+ K+ + L + P + L
Sbjct: 61 DNKDGPTQKYLLIFGAFVSVYIQEMFRFAYYKLLKKASEGLKSINPGETAPSMRL----- 115
Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYV-DRCPQMPFFLISAIIALAFVTIHTFS 174
+A GLG G+ VF ++ L+ + GP T + PQ FFL SA + L + +H F
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQ--FFLYSAFMTLVIILLHVFW 173
Query: 175 MVIAFNG 181
++ F+G
Sbjct: 174 GIVFFDG 180
>sp|Q5RDM3|APH1B_PONAB Gamma-secretase subunit APH-1B OS=Pongo abelii GN=APH1B PE=2 SV=1
Length = 257
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 94/187 (50%), Gaps = 13/187 (6%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
MT A G A IA GP+L+L+V I+ +P I+ +++ WL+SL++ S +W R +
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATEPLRIIFLIAGAFFWLVSLLISSLVWFMARVII 60
Query: 58 PLKSTTWWPFALLIIS--SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
K + L+ + SV QE R ++++ K+ + L + P + L
Sbjct: 61 DNKDGPTQKYLLIFGTFVSVYIQEMFRFAYYRLLKKASEGLKSINPGETAPSMRL----- 115
Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYV-DRCPQMPFFLISAIIALAFVTIHTFS 174
+A GLG G+ VF ++ L+ + GP T + PQ FFL SA + L + +H F
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSDSLGPGTVGIHGDSPQ--FFLYSAFMTLVIILLHVFW 173
Query: 175 MVIAFNG 181
++ F+G
Sbjct: 174 GIVFFDG 180
>sp|Q8C7N7|APH1B_MOUSE Gamma-secretase subunit APH-1B OS=Mus musculus GN=Aph1b PE=2 SV=1
Length = 257
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
MT A G A IA GP+L+L+V I+ P ++ +++ WL+SL++ S W R
Sbjct: 1 MTAAVFFGCAFIAFGPALALYVFTIATDPLRVIFLIAGAFFWLVSLLLSSVFWFLVRVIT 60
Query: 58 PLKSTTWWPFALL--IISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
+ + L+ ++ SV QE R+ ++K+ K+ + L + P + L
Sbjct: 61 DNRDGPVQNYLLIFGVLLSVCIQELFRLAYYKLLKKASEGLKSINPEETAPSMRL----- 115
Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTFS 174
+A GLG G+ VF ++ L+ + GP T + PQ FFL SA + L + +H F
Sbjct: 116 LAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQ--FFLNSAFMTLVVIMLHVFW 173
Query: 175 MVIAFNG 181
V+ F+G
Sbjct: 174 GVVFFDG 180
>sp|Q9DCZ9|APH1C_MOUSE Putative gamma-secretase subunit APH-1C OS=Mus musculus GN=Aph1c
PE=2 SV=1
Length = 258
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 93/188 (49%), Gaps = 14/188 (7%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIW---RAFL 57
MT+ G A IA GP+ +L++ I+ P ++ +++ WL+SL++ S W R
Sbjct: 1 MTLPVFFGCAFIAFGPAFALYLFTIATDPLRVIFLIAGAFFWLVSLLLSSMFWFLVRVIT 60
Query: 58 PLKSTTWWPFALLI--ISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
+ + + L+ + SV QE R+ ++K+ K+ + L + P + M+
Sbjct: 61 NNRDESVQNYLLIFGALLSVCIQELFRLAYYKLLKKASEGLKSI-----NPEEDIAPSMR 115
Query: 116 -IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVD-RCPQMPFFLISAIIALAFVTIHTF 173
+A GLG G+ VF ++ L+ + GP T + PQ FFL SA + L + +H F
Sbjct: 116 LLAYVSGLGFGIMSGVFSFVNTLSNSLGPGTVGIHGDSPQ--FFLNSAFMTLVVIMLHVF 173
Query: 174 SMVIAFNG 181
V+ F+G
Sbjct: 174 WGVVFFDG 181
>sp|Q8BVF7|APH1A_MOUSE Gamma-secretase subunit APH-1A OS=Mus musculus GN=Aph1a PE=2 SV=2
Length = 265
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
M A G +A GP+ SLF+ ++ P ++ +++ WL+SL++ S +W + +
Sbjct: 1 MGAAVFFGCTFVAFGPAFSLFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60
Query: 60 -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
+S + LLI SV QE R ++K+ K+ ++ L + ++ P Q
Sbjct: 61 DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 116
Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
+A GL G+ VF +++L A GP + +FL SA + A + +HTF
Sbjct: 117 MAYVSGLSFGIISGVFSVINILADALGPGVVGI-HGDSPYYFLTSAFLTAAIILLHTFWG 175
Query: 176 VIAFN 180
V+ F+
Sbjct: 176 VVFFD 180
>sp|Q96BI3|APH1A_HUMAN Gamma-secretase subunit APH-1A OS=Homo sapiens GN=APH1A PE=1 SV=1
Length = 265
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 89/185 (48%), Gaps = 10/185 (5%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
M A G +A GP+ +LF+ ++ P ++ +++ WL+SL++ S +W + +
Sbjct: 1 MGAAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFWLVSLLLASVVWFILVHVT 60
Query: 60 -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
+S + LLI SV QE R ++K+ K+ ++ L + ++ P Q
Sbjct: 61 DRSDARLQYGLLIFGAAVSVLLQEVFRFAYYKLLKKADEGLASLSEDGRSP----ISIRQ 116
Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
+A GL G+ VF +++L A GP + +FL SA + A + +HTF
Sbjct: 117 MAYVSGLSFGIISGVFSVINILADALGPGVVGI-HGDSPYYFLTSAFLTAAIILLHTFWG 175
Query: 176 VIAFN 180
V+ F+
Sbjct: 176 VVFFD 180
>sp|Q8JHE9|APH1B_DANRE Gamma-secretase subunit Aph-1b OS=Danio rerio GN=aph1b PE=2 SV=1
Length = 258
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 10/185 (5%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPL- 59
MTVA G IA GP+++LF+ I++ P ++ +++ WL+SL++ S +W + +
Sbjct: 1 MTVAVFFGCTFIAFGPAIALFMFTIARDPLRVIFLIAGAFFWLVSLLLSSLVWFITVQIS 60
Query: 60 -KSTTWWPFALLIIS---SVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQ 115
K++ LLI SV QE R ++++ K+ + L A + P Q
Sbjct: 61 NKNSATQQRGLLIFGVVLSVLLQEAFRYGYYRLLKKANEGLLALSQEDTMP----ISMRQ 116
Query: 116 IALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSM 175
+A GLG G F +++L+ + GP T + Q +F+ SA + LA + +H F
Sbjct: 117 LAYVSGLGFGFMSGAFSVVNILSDSLGPGTVGIHGESQ-HYFISSAFMTLAIILLHMFWG 175
Query: 176 VIAFN 180
V+ F
Sbjct: 176 VVFFE 180
>sp|Q55FS3|APH1_DICDI Gamma-secretase subunit Aph-1 OS=Dictyostelium discoideum GN=aph1
PE=3 SV=1
Length = 328
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%)
Query: 119 AGGLGHGVAHAVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIA 178
A G+G GVA+ S+L + GP T + CP + F++S+II L +H V+A
Sbjct: 200 AIGVGSGVAYGFIMFGSILWESTGPGTLFSPACPSVNLFMLSSIITLFMTLLHVVYNVLA 259
Query: 179 FNGYAEGNTTDQYFVPVVHLVA 200
F GY FV + H V
Sbjct: 260 FQGYRSKKYHLVAFVIITHFVT 281
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 13/119 (10%)
Query: 1 MTVAAGIGYALIALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLK 60
MT G I P L+ F VI+K L++ + + WL+S I+++ IW +P
Sbjct: 1 MTQVLFYGCLFITFSPILAFFFMVIAKNSQLVILTIGGSFFWLVS-ILIAAIWWYIIPPM 59
Query: 61 STTWWPFALLIISSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRLFLTDKMQIALA 119
WW +I SV FQE R +F+++Y F DR P L + Q +A
Sbjct: 60 REHWW---FIISFSVLFQEIFRYIFFRLYSY------GFNDR---PSLNQIKETQHQMA 106
>sp|O45876|APH1_CAEEL Gamma-secretase subunit aph-1 OS=Caenorhabditis elegans GN=aph-1
PE=1 SV=1
Length = 308
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 13 ALGPSLSLFVAVISKKPFLILTVLSSTLLWLISLIVLSGIWRAFLPLKSTTWWPFALLII 72
+ PS++LF + I+ P I+ + WL+SL+ S W L L + F L +
Sbjct: 13 SFSPSIALFCSFIAHDPVRIILFFLGSFFWLVSLLFSSLAW---LGLSTVLPDTFLLSLT 69
Query: 73 SSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPRL------FLTDKMQIALAGGLGHGV 126
+ QE RV ++ + K+ + L+ R G+ + + +AL GLG GV
Sbjct: 70 VCIIAQELSRVAYFMLLKKAQRGLNKIT-RQGQISVAPGVSDLHNARHMLALVCGLGMGV 128
Query: 127 AHAVFFCLSLLTPAFGPAT 145
A+F+ ++ GP T
Sbjct: 129 ISALFYTMNAFAIFSGPGT 147
>sp|A5PMW0|CTL5A_DANRE Choline transporter-like protein 5-A (Fragment) OS=Danio rerio
GN=slc44a5a PE=3 SV=1
Length = 702
Score = 30.8 bits (68), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 17/114 (14%)
Query: 18 LSLFVA-VISKKPFLILTVLSSTLLWLIS----LIVLSGIWRAFLPLKSTTWWPFALLII 72
+ LF+A VIS L+L + LLW I L+V GIW + P A + I
Sbjct: 230 IGLFIALVISLIFILLLRFTAGFLLWFIIFAVILLVAYGIWHCYWEFAVLRETPGADVTI 289
Query: 73 SSVGFQEGLRVLFWKVYKRLEDTLDAFADRVGKPR-------LFLTDKMQIALA 119
S +GFQ L VY +L T F +G +FL +++IA+A
Sbjct: 290 SDIGFQTDLH-----VYLQLSQTWLVFMVTLGLTEASIVLMLIFLRKRVRIAIA 338
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.333 0.144 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,098,733
Number of Sequences: 539616
Number of extensions: 3265098
Number of successful extensions: 13217
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 13182
Number of HSP's gapped (non-prelim): 40
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 60 (27.7 bits)