Query 025213
Match_columns 256
No_of_seqs 94 out of 112
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3i9v_6 NADH-quinone oxidoreduc 14.3 1E+02 0.0036 26.2 2.9 23 143-165 132-154 (181)
2 3myr_A Hydrogenase (NIFE) smal 12.4 1.3E+02 0.0045 26.9 3.0 25 142-166 138-162 (269)
3 1p1p_A AA-conotoxin PIVA; neur 9.5 59 0.002 19.5 -0.2 8 248-255 8-15 (26)
4 2wwb_B SEC61gamma, protein tra 9.0 2.3E+02 0.0077 20.4 2.7 24 113-136 33-56 (68)
5 1yqw_A Periplasmic [NIFE] hydr 8.8 1.8E+02 0.0062 25.8 2.6 21 145-165 141-161 (264)
6 1h2a_S Hydrogenase; SO ligand, 8.6 1.9E+02 0.0066 26.4 2.8 21 145-165 194-214 (317)
7 1wui_S Periplasmic [NIFE] hydr 8.6 1.9E+02 0.0064 25.7 2.7 21 145-165 144-164 (267)
8 3rgw_S Membrane-bound hydrogen 8.6 1.9E+02 0.0065 26.9 2.7 23 144-166 142-164 (339)
9 3uqy_S Hydrogenase-1 small cha 8.3 2E+02 0.0068 26.7 2.7 23 143-165 139-163 (335)
10 1yq9_A Periplasmic [NIFE] hydr 8.2 2E+02 0.0068 25.5 2.6 21 145-165 142-162 (264)
No 1
>3i9v_6 NADH-quinone oxidoreductase subunit 6; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_6* 2fug_6* 3iam_6* 3ias_6* 3m9s_6*
Probab=14.32 E-value=1e+02 Score=26.17 Aligned_cols=23 Identities=43% Similarity=0.779 Sum_probs=18.7
Q ss_pred CceeccCCCCCchHHHHHHHHHH
Q 025213 143 PATFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 143 PGt~g~~~c~~~~ffl~SA~~tl 165 (256)
|=.++++|||+.|-=++.++..+
T Consensus 132 pVDv~IPGCPP~Pe~il~~l~~l 154 (181)
T 3i9v_6 132 PVDVYVPGCPPRPEALIYAVMQL 154 (181)
T ss_dssp CCSEEECCSSCCHHHHHHHHHHH
T ss_pred CccEEeeCCCCCHHHHHHHHHHH
Confidence 55589999999998888877654
No 2
>3myr_A Hydrogenase (NIFE) small subunit HYDA; [NIFE] hydrogenase, photosynthetic P sulfur bacterium, iron-sulfur cluster, NI-A state; HET: SF4; 2.10A {Allochromatium vinosum} SCOP: e.19.1.0
Probab=12.45 E-value=1.3e+02 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=20.8
Q ss_pred cCceeccCCCCCchHHHHHHHHHHH
Q 025213 142 GPATFYVDRCPQMPFFLISAIIALA 166 (256)
Q Consensus 142 GPGt~g~~~c~~~~ffl~SA~~tl~ 166 (256)
||=.++++|||+.|--++.++..++
T Consensus 138 ~~vdi~IPGCPp~Pe~i~~~l~~ll 162 (269)
T 3myr_A 138 DKPVINVPGCPPIPMVITGVIAHYL 162 (269)
T ss_dssp SSCEEEECSSSCCHHHHHHHHHHHH
T ss_pred CCCEEEecCCCCCHHHHHHHHHHHH
Confidence 4778999999999988888886654
No 3
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=9.51 E-value=59 Score=19.47 Aligned_cols=8 Identities=63% Similarity=1.423 Sum_probs=6.3
Q ss_pred hhhhcccC
Q 025213 248 NVLCHACS 255 (256)
Q Consensus 248 ~~~~~~~~ 255 (256)
|.-||-|+
T Consensus 8 naachpc~ 15 (26)
T 1p1p_A 8 NAACHPCS 15 (26)
T ss_dssp CSSCCTTT
T ss_pred Cccccccc
Confidence 66788886
No 4
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=8.96 E-value=2.3e+02 Score=20.43 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.3
Q ss_pred hhHHHHhhccchhhHHHHHHHhhc
Q 025213 113 KMQIALAGGLGHGVAHAVFFCLSL 136 (256)
Q Consensus 113 ~~~lA~v~GlGfGimsg~f~~in~ 136 (256)
=.++|.++|+|+.+|..+=+.+-+
T Consensus 33 f~~iak~~~iG~~i~G~IGf~Ikl 56 (68)
T 2wwb_B 33 FQKIAMATAIGFAIMGFIGFFVKL 56 (68)
T ss_dssp HHHHHHHSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999877666443
No 5
>1yqw_A Periplasmic [NIFE] hydrogenase small subunit; NI-Fe hydrogenase unready state, oxidoreductase; 1.83A {Desulfovibrio fructosovorans} PDB: 3cur_A 3cus_A 3h3x_A 1yrq_A 1frf_S
Probab=8.78 E-value=1.8e+02 Score=25.82 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=17.3
Q ss_pred eeccCCCCCchHHHHHHHHHH
Q 025213 145 TFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 145 t~g~~~c~~~~ffl~SA~~tl 165 (256)
.+++||||+.|--++.++..+
T Consensus 141 Vi~IPGCPP~Pe~i~~~l~~l 161 (264)
T 1yqw_A 141 TINIPGCPPNPINFVGAVVHV 161 (264)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred EEEeeCCCCCHHHHHHHHHHH
Confidence 489999999998887777554
No 6
>1h2a_S Hydrogenase; SO ligand, hydrogen metabolism, Mg center, MIR, MAD, oxidoreductase; 1.80A {Desulfovibrio vulgaris str} SCOP: e.19.1.1
Probab=8.65 E-value=1.9e+02 Score=26.38 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=17.6
Q ss_pred eeccCCCCCchHHHHHHHHHH
Q 025213 145 TFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 145 t~g~~~c~~~~ffl~SA~~tl 165 (256)
.+++||||+.|--++.++..+
T Consensus 194 di~IPGCPP~Pe~i~~~l~~l 214 (317)
T 1h2a_S 194 AINIAGCPPNPYNLVGTIVYY 214 (317)
T ss_dssp CBCCCCSSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999998888777654
No 7
>1wui_S Periplasmic [NIFE] hydrogenase small subunit; high resolution [NIFE]hydrogenase, oxidoreductase, NI-A state, unready state; HET: NFC; 1.04A {Desulfovibrio vulgaris str} SCOP: e.19.1.1 PDB: 1h2r_S 1ubj_S 1ubh_S 1ubl_S 1ubm_S 1ubo_S 1ubr_S 1ubt_S 1ubu_S 1wuh_S* 1ubk_S* 1wuj_S 1wuk_S 1wul_S 1e3d_A*
Probab=8.62 E-value=1.9e+02 Score=25.69 Aligned_cols=21 Identities=24% Similarity=0.656 Sum_probs=17.7
Q ss_pred eeccCCCCCchHHHHHHHHHH
Q 025213 145 TFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 145 t~g~~~c~~~~ffl~SA~~tl 165 (256)
.++++|||+.|--++.++..+
T Consensus 144 di~IPGCPP~Pe~i~~~l~~l 164 (267)
T 1wui_S 144 AINIAGCPPNPYNLVGTIVYY 164 (267)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 789999999998888877654
No 8
>3rgw_S Membrane-bound hydrogenase (NIFE) small subunit H; [NIFE] hydrogenase, high-resolution knallgasbacteria, proteobacteria; 1.50A {Ralstonia eutropha}
Probab=8.61 E-value=1.9e+02 Score=26.86 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.7
Q ss_pred ceeccCCCCCchHHHHHHHHHHH
Q 025213 144 ATFYVDRCPQMPFFLISAIIALA 166 (256)
Q Consensus 144 Gt~g~~~c~~~~ffl~SA~~tl~ 166 (256)
=.++++|||+.|--++.++..++
T Consensus 142 vdi~IPGCPP~Pe~i~~~l~~ll 164 (339)
T 3rgw_S 142 PIIKVPGCPPIAEVMTGVITYML 164 (339)
T ss_dssp CEEEECSSSCCHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCHHHHHHHHHHHH
Confidence 35899999999988888876554
No 9
>3uqy_S Hydrogenase-1 small chain; membrane-bound hydrogenase, oxidoreductase; HET: LMT; 1.47A {Escherichia coli} PDB: 3usc_S* 3use_S*
Probab=8.33 E-value=2e+02 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.431 Sum_probs=18.8
Q ss_pred Cc--eeccCCCCCchHHHHHHHHHH
Q 025213 143 PA--TFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 143 PG--t~g~~~c~~~~ffl~SA~~tl 165 (256)
|+ .+++||||+.|--++.++..+
T Consensus 139 ~~~~di~IPGCPP~Pe~i~~~l~~l 163 (335)
T 3uqy_S 139 TDKPIIKVPGCPPIPDVMSAIITYM 163 (335)
T ss_dssp CSSCEEEECSSSCCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 65 589999999998888877654
No 10
>1yq9_A Periplasmic [NIFE] hydrogenase small subunit; oxidoreductase; 2.35A {Desulfovibrio gigas} SCOP: e.19.1.1 PDB: 2frv_S 1frv_A
Probab=8.22 E-value=2e+02 Score=25.53 Aligned_cols=21 Identities=19% Similarity=0.640 Sum_probs=17.4
Q ss_pred eeccCCCCCchHHHHHHHHHH
Q 025213 145 TFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 145 t~g~~~c~~~~ffl~SA~~tl 165 (256)
.++++|||+.|--++.++..+
T Consensus 142 di~IPGCPP~Pe~i~~~l~~l 162 (264)
T 1yq9_A 142 AINIAGCPPNPMNFVGTVVHL 162 (264)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
Confidence 799999999997777777554
Done!