Query 025213
Match_columns 256
No_of_seqs 94 out of 112
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 05:52:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rh5b_ f.23.28.1 (B:) Preprot 16.3 32 0.0023 22.6 1.8 23 114-136 24-46 (56)
2 d2fug61 e.19.1.2 (6:15-175) NA 14.7 45 0.0033 26.0 2.7 22 143-164 118-139 (161)
3 d3cx5i1 f.23.14.1 (I:4-58) Sub 8.7 1.1E+02 0.0082 19.7 2.7 22 21-42 4-25 (55)
4 d1yq9a1 e.19.1.1 (A:4-264) Nic 8.7 87 0.0063 25.6 2.7 22 144-165 138-159 (261)
5 d2gfoa1 d.3.1.9 (A:762-1109) U 8.0 1E+02 0.0074 23.7 2.6 27 141-168 11-37 (348)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 7.5 5.6E+02 0.041 21.3 7.8 14 26-39 57-70 (472)
7 d1ppjw_ f.23.14.1 (W:) Subunit 6.2 1.5E+02 0.011 19.5 2.3 23 20-42 9-31 (62)
8 d1wuis1 e.19.1.1 (S:1-267) Nic 6.1 1.6E+02 0.012 23.9 3.1 23 142-164 141-163 (267)
9 d1frfs_ e.19.1.1 (S:) Nickel-i 5.9 1.4E+02 0.01 24.2 2.7 21 145-165 138-158 (261)
10 d1xrda1 f.3.1.1 (A:1-52) Light 5.1 2.5E+02 0.018 17.8 2.9 20 27-47 8-27 (52)
No 1
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=16.29 E-value=32 Score=22.62 Aligned_cols=23 Identities=13% Similarity=0.277 Sum_probs=18.8
Q ss_pred hHHHHhhccchhhHHHHHHHhhc
Q 025213 114 MQIALAGGLGHGVAHAVFFCLSL 136 (256)
Q Consensus 114 ~~lA~v~GlGfGimsg~f~~in~ 136 (256)
.++|.++|.|+-+|..+=+.+-+
T Consensus 24 ~~ia~v~~iG~~i~G~IGf~I~l 46 (56)
T d1rh5b_ 24 LAVAKVTALGISLLGIIGYIIHV 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999876665544
No 2
>d2fug61 e.19.1.2 (6:15-175) NAD-quinone oxidoreductase chain 6, Nqo6 {Thermus thermophilus [TaxId: 274]}
Probab=14.75 E-value=45 Score=26.03 Aligned_cols=22 Identities=41% Similarity=0.754 Sum_probs=18.5
Q ss_pred CceeccCCCCCchHHHHHHHHH
Q 025213 143 PATFYVDRCPQMPFFLISAIIA 164 (256)
Q Consensus 143 PGt~g~~~c~~~~ffl~SA~~t 164 (256)
|=.++++|||+.|-=++.++..
T Consensus 118 PVDvyIPGCPPrPeail~gl~~ 139 (161)
T d2fug61 118 PVDVYVPGCPPRPEALIYAVMQ 139 (161)
T ss_dssp CCSEEECCSSCCHHHHHHHHHH
T ss_pred cCceeCCCCCcCHHHHHHHHHH
Confidence 7789999999999777777754
No 3
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.75 E-value=1.1e+02 Score=19.67 Aligned_cols=22 Identities=5% Similarity=0.409 Sum_probs=11.5
Q ss_pred hhHhhcCCchhHHHHHHHHHHH
Q 025213 21 FVAVISKKPFLILTVLSSTLLW 42 (256)
Q Consensus 21 F~~tIa~~P~lIIiliagAFfW 42 (256)
|=....|++..+...++|||++
T Consensus 4 Y~~lfrRnSv~~~tI~~gAf~f 25 (55)
T d3cx5i1 4 YKTFFKRNAVFVGTIFAGAFVF 25 (55)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555543
No 4
>d1yq9a1 e.19.1.1 (A:4-264) Nickel-iron hydrogenase, small subunit {Desulfovibrio gigas [TaxId: 879]}
Probab=8.74 E-value=87 Score=25.57 Aligned_cols=22 Identities=18% Similarity=0.605 Sum_probs=17.7
Q ss_pred ceeccCCCCCchHHHHHHHHHH
Q 025213 144 ATFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 144 Gt~g~~~c~~~~ffl~SA~~tl 165 (256)
=.+.++|||..|--+..++.++
T Consensus 138 ~~i~IpGCPp~p~~i~~~l~~l 159 (261)
T d1yq9a1 138 KAINIAGCPPNPMNFVGTVVHL 159 (261)
T ss_dssp CCEEECSSSCCHHHHHHHHHHH
T ss_pred CeEEeCCCCCCHHHHHHHHHHH
Confidence 3588999999998888777654
No 5
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.98 E-value=1e+02 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.151 Sum_probs=21.0
Q ss_pred ccCceeccCCCCCchHHHHHHHHHHHHH
Q 025213 141 FGPATFYVDRCPQMPFFLISAIIALAFV 168 (256)
Q Consensus 141 ~GPGt~g~~~c~~~~ffl~SA~~tl~~i 168 (256)
.|||-+|+.-= ...-|+.|.+|++.-+
T Consensus 11 ~~~g~vGL~N~-GNtCYlNSvLQ~L~~i 37 (348)
T d2gfoa1 11 SGPALTGLRNL-GNTCYMNSILQCLCNA 37 (348)
T ss_dssp SSTTCCEECCS-SSCHHHHHHHHHHHTC
T ss_pred CCCCeECCccC-CchhHHHHHHHHHHcC
Confidence 38999999953 3357999999988663
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=7.52 E-value=5.6e+02 Score=21.28 Aligned_cols=14 Identities=7% Similarity=0.169 Sum_probs=10.3
Q ss_pred cCCchhHHHHHHHH
Q 025213 26 SKKPFLILTVLSST 39 (256)
Q Consensus 26 a~~P~lIIiliagA 39 (256)
-+||..+|+.+++.
T Consensus 57 ~~~~~~~iL~~aa~ 70 (472)
T d1wpga4 57 FEDLLVRILLLAAC 70 (472)
T ss_dssp TCSHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHH
Confidence 36888888777764
No 7
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.18 E-value=1.5e+02 Score=19.52 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=13.7
Q ss_pred HhhHhhcCCchhHHHHHHHHHHH
Q 025213 20 LFVAVISKKPFLILTVLSSTLLW 42 (256)
Q Consensus 20 LF~~tIa~~P~lIIiliagAFfW 42 (256)
+|=....|++..+...++|||++
T Consensus 9 lYn~lfrRnStf~~tI~~gAf~f 31 (62)
T d1ppjw_ 9 LYSLLFRRTSTFALTIVVGALFF 31 (62)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455566666666666666654
No 8
>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit {Desulfovibrio vulgaris [TaxId: 881]}
Probab=6.06 E-value=1.6e+02 Score=23.89 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=17.5
Q ss_pred cCceeccCCCCCchHHHHHHHHH
Q 025213 142 GPATFYVDRCPQMPFFLISAIIA 164 (256)
Q Consensus 142 GPGt~g~~~c~~~~ffl~SA~~t 164 (256)
++=.++++|||..|--+..++..
T Consensus 141 ~~vdi~IpGCPp~p~~i~~~l~~ 163 (267)
T d1wuis1 141 GVKAINIAGCPPNPYNLVGTIVY 163 (267)
T ss_dssp TCCCEEECSSSCCHHHHHHHHHH
T ss_pred CCCeEEeCCCCCCHHHHHHHHHH
Confidence 44578999999999777766643
No 9
>d1frfs_ e.19.1.1 (S:) Nickel-iron hydrogenase, small subunit {Desulfovibrio fructosovorans [TaxId: 878]}
Probab=5.92 E-value=1.4e+02 Score=24.17 Aligned_cols=21 Identities=24% Similarity=0.648 Sum_probs=16.4
Q ss_pred eeccCCCCCchHHHHHHHHHH
Q 025213 145 TFYVDRCPQMPFFLISAIIAL 165 (256)
Q Consensus 145 t~g~~~c~~~~ffl~SA~~tl 165 (256)
.+.++|||+.|--+..++..+
T Consensus 138 vinIpGCPp~p~~i~~~l~~l 158 (261)
T d1frfs_ 138 TINIPGCPPNPINFVGAVVHV 158 (261)
T ss_dssp CEEECSSSCCHHHHHHHHHHH
T ss_pred eEEecCCCCCHHHHHHHHHHH
Confidence 357999999998887777544
No 10
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=5.06 E-value=2.5e+02 Score=17.81 Aligned_cols=20 Identities=25% Similarity=0.477 Sum_probs=12.5
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 025213 27 KKPFLILTVLSSTLLWLISLI 47 (256)
Q Consensus 27 ~~P~lIIiliagAFfWLvSLL 47 (256)
=||.|+.+.+.. |.-.+.++
T Consensus 8 fDPRr~lva~~~-fL~~LAl~ 27 (52)
T d1xrda1 8 FDPRQALVGLAT-FLFVLALL 27 (52)
T ss_dssp SSHHHHHHHHHH-HHHHHHHH
T ss_pred ecHHHHHHHHHH-HHHHHHHH
Confidence 389998887755 44444443
Done!