BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025214
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus
GN=Rpp25l PE=2 SV=1
Length = 163
Score = 84.7 bits (208), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 1 MDRYQRV-------EKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAM 53
M++Y+R P + P D E+R+ ++R+ + A+ L+ + +VF
Sbjct: 1 MEQYRRAGSVELPASSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGS 60
Query: 54 GRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITIT 111
GRA K V+ E++KRR+ GLHQ T + D+W P + GL PL RHV + +
Sbjct: 61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120
Query: 112 LSKKELNRSSVGYQPP 127
LS+ L+ S GYQPP
Sbjct: 121 LSRDPLDPSECGYQPP 136
>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens
GN=RPP25L PE=1 SV=1
Length = 163
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 10 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
P + P D E+R+ ++R+ + A+ L+ + +VF GRA K V+ E++KR
Sbjct: 17 PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
R+ GLHQ T + D+W P + GL PL RHV + + LS+ L+ + GYQPP
Sbjct: 77 RVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVLLSRDPLDPNECGYQPP 136
>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus
GN=RPP25L PE=2 SV=1
Length = 163
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 10 PKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69
P + P D E+R+ + ++R+ + A+ L+ + +VF GRA K V+ E++KR
Sbjct: 17 PMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGSGRAAGKAVSCAEIVKR 76
Query: 70 RIVGLHQNTVIGSTDITDTWEPL--EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
R+ GL+Q T + D+W P + GL PL HV + + LS+ L+ + GYQPP
Sbjct: 77 RVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVLLSRDPLDPNEYGYQPP 136
>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1
SV=1
Length = 199
Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 21 IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
+R+ ++R+ + +A + + + IVF GRA KTVT E++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDTWEPLEEG----------LLPLETTRHVSMITITLSKKELNRSSVGYQPPLP 129
+ + W+ L G L ++V + I LSK L+ GYQPP P
Sbjct: 98 RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPNP 156
>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25
PE=2 SV=1
Length = 199
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 21 IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
+R+ ++R+ + +A + + + IVF GRA KTVT E++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDTWEPL----------EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
+ + W+ L + L ++V + I LSK L+ +GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2
SV=1
Length = 199
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 10/117 (8%)
Query: 21 IRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80
+R+ ++R+ + +A + + + IVF GRA KTVT E++KRR+ GLHQ T +
Sbjct: 38 MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97
Query: 81 GSTDITDTWEPL----------EEGLLPLETTRHVSMITITLSKKELNRSSVGYQPP 127
+ + W+ L + L ++V + I LSK L+ +GYQPP
Sbjct: 98 RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPP 154
>sp|Q9YAX2|ALBA2_AERPE DNA/RNA-binding protein Alba 2 OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=albA2 PE=1 SV=1
Length = 102
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 17/101 (16%)
Query: 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV 79
E+RI + M +Y+ +T L E+G+N++V KA GR IN+ V VE++++R +N
Sbjct: 8 EVRIGRKPVM-NYVLAILTTLMEQGTNQVVVKARGRNINRAVDAVEIVRKR---FAKNIE 63
Query: 80 IGSTDITDTWEPLEEGLLPLET------TRHVSMITITLSK 114
I I D+ E + ++T TR VS I I L K
Sbjct: 64 IKDIKI-DSQE------IEVQTPEGQTRTRRVSSIEICLEK 97
>sp|P60849|ALBA1_SULSO DNA/RNA-binding protein Alba 1 OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=albA1 PE=1
SV=2
Length = 97
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
TP N + I + M +Y+ A+TLL + G +EIV KA GRAI+K V VE+++ R
Sbjct: 5 TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59
>sp|P60848|ALBA1_SULSH DNA/RNA-binding protein Alba 1 OS=Sulfolobus shibatae GN=albA1
PE=1 SV=2
Length = 97
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
TP N + I + M +Y+ A+TLL + G +EIV KA GRAI+K V VE+++ R
Sbjct: 5 TPTPSNVVLIGKKPVM-NYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNR 59
>sp|Q971T8|ALBA1_SULTO DNA/RNA-binding protein Alba 1 OS=Sulfolobus tokodaii (strain DSM
16993 / JCM 10545 / NBRC 100140 / 7) GN=albA1 PE=3 SV=1
Length = 99
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 14 TPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
TP N + + + M +Y+ A+TLL + G +EI+ KA GRAI+K V VE+++ R
Sbjct: 6 TPTPSNVVLVGKKPVM-NYVLAALTLLNQ-GVSEIIIKARGRAISKAVDTVEIVRNR 60
>sp|P60851|ALBA_NANEQ DNA/RNA-binding protein Alba OS=Nanoarchaeum equitans (strain
Kin4-M) GN=albA PE=3 SV=1
Length = 90
Score = 38.5 bits (88), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 35 YAMTLLQE--RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPL 92
Y M ++ + +G+NE+V KA GR I++ V + E +++R + G D+ D
Sbjct: 14 YVMAVVMQFMQGANEVVIKARGRNISRAVDVAERVRKRFLA-------GQVDVGDIKIDS 66
Query: 93 EEGLLPLE-TTRHVSMITITLSKK 115
EE + P R VS I I L KK
Sbjct: 67 EEVVDPATGQKRTVSTIEIKLVKK 90
>sp|A4YHK0|ALBA_METS5 DNA/RNA-binding protein Alba OS=Metallosphaera sedula (strain
ATCC 51363 / DSM 5348) GN=albA PE=3 SV=1
Length = 98
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 29 MRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70
+ +Y+ A+TLL + G EI+ KA GRAI+K V VE+++ R
Sbjct: 19 VMNYVLAALTLLNQ-GVPEIIIKARGRAISKAVDTVEIVRNR 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,466,637
Number of Sequences: 539616
Number of extensions: 5360595
Number of successful extensions: 24292
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 591
Number of HSP's that attempted gapping in prelim test: 17208
Number of HSP's gapped (non-prelim): 4351
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)