Query 025214
Match_columns 256
No_of_seqs 173 out of 347
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:41:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2567 Uncharacterized conser 100.0 5.6E-49 1.2E-53 335.3 13.3 144 1-144 1-144 (179)
2 PRK04015 DNA/RNA-binding prote 99.8 3.7E-20 8E-25 145.6 11.8 88 16-115 2-91 (91)
3 TIGR00285 DNA-binding protein 99.8 1.9E-18 4.1E-23 134.9 11.6 85 18-114 1-87 (87)
4 COG1581 Ssh10b Archaeal DNA-bi 99.7 1.5E-17 3.3E-22 129.6 11.8 86 17-114 3-90 (91)
5 PF01918 Alba: Alba; InterPro 99.7 1.8E-16 3.8E-21 117.0 10.1 65 19-83 1-69 (70)
6 PF12328 Rpp20: Rpp20 subunit 99.4 2.2E-12 4.7E-17 109.1 9.4 93 18-111 3-144 (144)
7 KOG3973 Uncharacterized conser 95.2 0.038 8.3E-07 53.6 5.6 14 102-115 288-301 (465)
8 KOG0921 Dosage compensation co 94.0 0.16 3.4E-06 54.7 7.4 8 203-210 1264-1271(1282)
9 PF05918 API5: Apoptosis inhib 92.5 0.037 7.9E-07 56.3 0.0 34 59-92 429-464 (556)
10 PF05918 API5: Apoptosis inhib 86.7 0.2 4.3E-06 51.1 0.0 8 110-117 457-464 (556)
11 PF04232 SpoVS: Stage V sporul 82.0 23 0.0005 28.0 11.6 51 19-71 2-53 (86)
12 KOG1596 Fibrillarin and relate 80.9 3.6 7.9E-05 38.8 5.6 8 230-237 108-115 (317)
13 PF02780 Transketolase_C: Tran 37.9 1.3E+02 0.0027 23.8 6.2 37 45-83 9-46 (124)
14 PF06792 UPF0261: Uncharacteri 37.6 88 0.0019 31.1 6.2 46 17-62 184-232 (403)
15 PRK02399 hypothetical protein; 36.6 96 0.0021 30.9 6.3 45 18-62 186-233 (406)
16 cd04823 ALAD_PBGS_aspartate_ri 32.6 2.8E+02 0.0062 26.9 8.6 56 29-88 53-124 (320)
17 PTZ00070 40S ribosomal protein 27.6 58 0.0013 30.6 3.0 6 157-162 20-25 (257)
18 PRK14457 ribosomal RNA large s 26.3 1.5E+02 0.0032 28.6 5.6 58 28-87 133-194 (345)
19 PRK10590 ATP-dependent RNA hel 26.1 1.4E+02 0.003 29.1 5.5 10 60-69 258-267 (456)
20 KOG3262 H/ACA small nucleolar 25.8 1.1E+02 0.0023 27.9 4.2 6 108-113 106-111 (215)
21 PRK14459 ribosomal RNA large s 25.6 1.7E+02 0.0037 28.7 5.9 81 29-119 154-249 (373)
22 PRK13384 delta-aminolevulinic 24.2 4E+02 0.0086 26.0 7.9 63 18-88 53-129 (322)
23 COG0290 InfC Translation initi 23.1 3.7E+02 0.0081 24.0 7.0 64 16-79 88-154 (176)
24 PRK05261 putative phosphoketol 23.0 1.3E+02 0.0028 32.4 4.9 30 46-75 614-644 (785)
25 KOG2945 Predicted RNA-binding 22.2 97 0.0021 30.5 3.5 9 107-115 288-296 (365)
26 PRK10590 ATP-dependent RNA hel 21.6 1.4E+02 0.003 29.1 4.5 21 34-54 259-279 (456)
27 PRK14456 ribosomal RNA large s 21.4 1.8E+02 0.004 28.2 5.3 41 29-69 154-201 (368)
28 TIGR00075 hypD hydrogenase exp 21.3 2.4E+02 0.0052 27.9 6.0 54 20-79 117-173 (369)
29 PRK15062 hydrogenase isoenzyme 20.8 2.5E+02 0.0054 27.7 6.0 54 20-79 111-167 (364)
30 cd05013 SIS_RpiR RpiR-like pro 20.4 2.8E+02 0.006 21.1 5.2 36 32-69 2-37 (139)
31 cd00384 ALAD_PBGS Porphobilino 20.3 5.8E+02 0.013 24.8 8.2 63 18-88 43-119 (314)
32 cd08982 GH43_3 Glycosyl hydrol 20.2 1.1E+02 0.0024 28.2 3.4 38 102-139 248-288 (295)
No 1
>KOG2567 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-49 Score=335.31 Aligned_cols=144 Identities=45% Similarity=0.690 Sum_probs=140.1
Q ss_pred CCCceeccCCCCCCCCCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEEE
Q 025214 1 MDRYQRVEKPKAETPIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI 80 (256)
Q Consensus 1 Md~Y~rV~kp~~~~p~~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~I 80 (256)
||.|++|-||++++|++.|+|||+.+++|+|||.||+.+|+++.++.|||+|||+||+|||+||||||||+++|||+|+|
T Consensus 1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l 80 (179)
T KOG2567|consen 1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL 80 (179)
T ss_pred CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccccCCCcceeeeeeeEEEEEEecccCCCCCCCcCCCCCCCCCccCccccCCCC
Q 025214 81 GSTDITDTWEPLEEGLLPLETTRHVSMITITLSKKELNRSSVGYQPPLPAEQVKPLIEFDYDGE 144 (256)
Q Consensus 81 ~tv~v~D~~EP~eEGL~~~~~~R~VS~I~ItLSk~pLD~~~pGYQ~Pl~~~~vk~~~~~~~~~~ 144 (256)
.+++|+|+|+|++|||++++++||||+|+|+||+++||++++|||+|.+..+.+.+...+|+..
T Consensus 81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~~p~p~~~~~~p~~~~ 144 (179)
T KOG2567|consen 81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNPQPHPRSQPRHPYSPR 144 (179)
T ss_pred eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCCCCCCCCcccCCcccc
Confidence 9999999999999999999999999999999999999999999999999999998888887653
No 2
>PRK04015 DNA/RNA-binding protein albA; Provisional
Probab=99.83 E-value=3.7e-20 Score=145.64 Aligned_cols=88 Identities=33% Similarity=0.558 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEE--EEEEEecccccccc
Q 025214 16 IDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV--IGSTDITDTWEPLE 93 (256)
Q Consensus 16 ~~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~--I~tv~v~D~~EP~e 93 (256)
..+|+|+|+++ +++|||.+++.+|+ ++.++|+|||+|+||+|||+||||||+||-..+++.+ |+|..+.+ +
T Consensus 2 ~~en~i~Ig~k-pvmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~-----~ 74 (91)
T PRK04015 2 AEENVVLVGKK-PVMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTS-----E 74 (91)
T ss_pred CCCCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeec-----C
Confidence 36899999996 79999999999999 6899999999999999999999999999955577765 67776655 3
Q ss_pred cCCCcceeeeeeeEEEEEEecc
Q 025214 94 EGLLPLETTRHVSMITITLSKK 115 (256)
Q Consensus 94 EGL~~~~~~R~VS~I~ItLSk~ 115 (256)
+| .+|+||+|+|+|++.
T Consensus 75 ~g-----~~~~VS~IEI~l~k~ 91 (91)
T PRK04015 75 DG-----RESNVSTIEIVLEKK 91 (91)
T ss_pred CC-----cEEEEEEEEEEEecC
Confidence 44 578999999999974
No 3
>TIGR00285 DNA-binding protein Alba. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.
Probab=99.78 E-value=1.9e-18 Score=134.88 Aligned_cols=85 Identities=33% Similarity=0.560 Sum_probs=73.2
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEEE--EEEEecccccccccC
Q 025214 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVI--GSTDITDTWEPLEEG 95 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~I--~tv~v~D~~EP~eEG 95 (256)
+|.|+|.+| +++|||..++.+|+ ++.++|+|||+|+||+|||+|||+||+||...+++.+| +|.++.. ++|
T Consensus 1 e~~i~vG~K-PvmnYVlavlt~fn-~g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~~-----~~G 73 (87)
T TIGR00285 1 ENVVYIGNK-PVMNYVLAVLTQLN-SGADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIKS-----EQG 73 (87)
T ss_pred CCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEeec-----CCC
Confidence 489999997 79999999999998 58999999999999999999999999999655666655 7766654 444
Q ss_pred CCcceeeeeeeEEEEEEec
Q 025214 96 LLPLETTRHVSMITITLSK 114 (256)
Q Consensus 96 L~~~~~~R~VS~I~ItLSk 114 (256)
.+++||+|+|+|++
T Consensus 74 -----~~~~VStIEI~l~~ 87 (87)
T TIGR00285 74 -----REVNVSTIEIVLAK 87 (87)
T ss_pred -----ceeeEEEEEEEEeC
Confidence 57899999999975
No 4
>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]
Probab=99.75 E-value=1.5e-17 Score=129.64 Aligned_cols=86 Identities=33% Similarity=0.625 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhh-CCcE-EEEEEEEEEeccccccccc
Q 025214 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE 94 (256)
Q Consensus 17 ~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi-~GLh-Q~t~I~tv~v~D~~EP~eE 94 (256)
.+|.|+|.+| ++.|||..++.+|+ .+.++|+|||.|+||||||++||||+.|| |++. ..++|+|.+++. ++
T Consensus 3 ~envV~vG~K-PvmNYVlAvlt~fn-~g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~~-----~~ 75 (91)
T COG1581 3 EENVVLVGKK-PVMNYVLAVLTQFN-EGADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELEG-----ED 75 (91)
T ss_pred CccEEEEcCc-chHHHHHHHHHHHH-cCCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeeec-----CC
Confidence 4699999987 79999999999999 47999999999999999999999999999 6543 445677766654 33
Q ss_pred CCCcceeeeeeeEEEEEEec
Q 025214 95 GLLPLETTRHVSMITITLSK 114 (256)
Q Consensus 95 GL~~~~~~R~VS~I~ItLSk 114 (256)
| .+++||+|+|.|.+
T Consensus 76 g-----r~~~VS~IeI~L~k 90 (91)
T COG1581 76 G-----RTRNVSTIEIVLAK 90 (91)
T ss_pred C-----ceeeEEEEEEEEec
Confidence 4 47899999999986
No 5
>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function. The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....
Probab=99.69 E-value=1.8e-16 Score=117.00 Aligned_cols=65 Identities=40% Similarity=0.660 Sum_probs=58.2
Q ss_pred CeEEEcCCCchhHHHHHHHHHH---hhCCCCeEEEEEcChhHHHHHHHHHHHHHhh-CCcEEEEEEEEE
Q 025214 19 NEIRITSQGRMRSYITYAMTLL---QERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLHQNTVIGST 83 (256)
Q Consensus 19 NeIrVt~kgkirnyV~~Ai~lL---~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi-~GLhQ~t~I~tv 83 (256)
|+|+|++++++++||.+|+.+| ++.+.++|+|+|+|+||+|||+||||||+++ ++|||++.+.+.
T Consensus 1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t 69 (70)
T PF01918_consen 1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITST 69 (70)
T ss_dssp SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence 7999999999999999999999 4467999999999999999999999999999 489999988653
No 6
>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B.
Probab=99.38 E-value=2.2e-12 Score=109.09 Aligned_cols=93 Identities=26% Similarity=0.370 Sum_probs=67.2
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhC-------------------C------------CCeEEEEEcChhHHHHHHHHHH
Q 025214 18 ENEIRITSQGRMRSYITYAMTLLQER-------------------G------------SNEIVFKAMGRAINKTVTIVEL 66 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai~lL~e~-------------------g------------~~eVvIkg~G~AIsKAV~VAEI 66 (256)
++.|+|+++++|.+.|..+.+||+.. . ..+|+|||||+||.||++||.-
T Consensus 3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~ 82 (144)
T PF12328_consen 3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW 82 (144)
T ss_dssp TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence 57999999999999999999999731 1 2799999999999999999999
Q ss_pred HHHhhCCcEEEEEEEEEEecccccccc------------------cCCCcceeeeeeeEEEEE
Q 025214 67 IKRRIVGLHQNTVIGSTDITDTWEPLE------------------EGLLPLETTRHVSMITIT 111 (256)
Q Consensus 67 LKRRi~GLhQ~t~I~tv~v~D~~EP~e------------------EGL~~~~~~R~VS~I~It 111 (256)
+++.- ++-..+.++|+++.|++++.+ +..++...+|.||+|+|.
T Consensus 83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~ 144 (144)
T PF12328_consen 83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA 144 (144)
T ss_dssp HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence 98875 677888999999999998663 456678899999999984
No 7
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=95.16 E-value=0.038 Score=53.64 Aligned_cols=14 Identities=21% Similarity=0.078 Sum_probs=6.9
Q ss_pred eeeeeEEEEEEecc
Q 025214 102 TRHVSMITITLSKK 115 (256)
Q Consensus 102 ~R~VS~I~ItLSk~ 115 (256)
+|..|.|+=++--.
T Consensus 288 e~Taski~k~~igr 301 (465)
T KOG3973|consen 288 ERTASKIHKLSIGR 301 (465)
T ss_pred hhhhhhhccccccc
Confidence 34555565544433
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=94.00 E-value=0.16 Score=54.73 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=3.1
Q ss_pred CCCCCCCC
Q 025214 203 GYNGPHFD 210 (256)
Q Consensus 203 gy~~~~~~ 210 (256)
.|++++.+
T Consensus 1264 agggGgfg 1271 (1282)
T KOG0921|consen 1264 AGGGGGFG 1271 (1282)
T ss_pred CCCCCCCC
Confidence 33333333
No 9
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=92.46 E-value=0.037 Score=56.33 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhCCcEEEEEE--EEEEeccccccc
Q 025214 59 KTVTIVELIKRRIVGLHQNTVI--GSTDITDTWEPL 92 (256)
Q Consensus 59 KAV~VAEILKRRi~GLhQ~t~I--~tv~v~D~~EP~ 92 (256)
.|+.+++=|-.-+..||-..-+ ++..|+=.|.+.
T Consensus 429 ~aLkt~~NI~~lik~L~~~pPsf~~~~~itlSWk~~ 464 (556)
T PF05918_consen 429 TALKTTNNILALIKDLFHNPPSFKSTKNITLSWKEA 464 (556)
T ss_dssp HHHHHHHHHHHHHCC----------------TTS--
T ss_pred HHHHHHhhHHHHHHHHhhCCcccccccccceeeeec
Confidence 3454444444445566544322 222244556543
No 10
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.75 E-value=0.2 Score=51.11 Aligned_cols=8 Identities=75% Similarity=0.617 Sum_probs=1.6
Q ss_pred EEEecccC
Q 025214 110 ITLSKKEL 117 (256)
Q Consensus 110 ItLSk~pL 117 (256)
|+||-.+.
T Consensus 457 itlSWk~~ 464 (556)
T PF05918_consen 457 ITLSWKEA 464 (556)
T ss_dssp ---TTS--
T ss_pred cceeeeec
Confidence 56665443
No 11
>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG. SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.
Probab=82.05 E-value=23 Score=27.95 Aligned_cols=51 Identities=16% Similarity=0.350 Sum_probs=35.9
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC-hhHHHHHHHHHHHHHhh
Q 025214 19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG-RAINKTVTIVELIKRRI 71 (256)
Q Consensus 19 NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G-~AIsKAV~VAEILKRRi 71 (256)
+.++|.++++....-..-...|.++ ..+.|.++| .|++.||.-.-|-+.-+
T Consensus 2 e~LKVSs~S~p~~vAgAIa~~lre~--~~v~lqaiGa~AvnqAvKAIAiAR~~l 53 (86)
T PF04232_consen 2 EVLKVSSKSNPNAVAGAIAGVLREG--GKVELQAIGAGAVNQAVKAIAIARGYL 53 (86)
T ss_dssp -EEEE-TT--HHHHHHHHHHHHHHT--SEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHhcC--CcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence 4689999998888777777778763 699999999 67888887776666555
No 12
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=80.95 E-value=3.6 Score=38.83 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=3.5
Q ss_pred CCcccccc
Q 025214 230 FSPCCLYY 237 (256)
Q Consensus 230 ~~~~~~~~ 237 (256)
++|-.+.|
T Consensus 108 lvpge~vY 115 (317)
T KOG1596|consen 108 LVPGESVY 115 (317)
T ss_pred cCCccccc
Confidence 34444444
No 13
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=37.87 E-value=1.3e+02 Score=23.80 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCeEEEEEcChhHHHHHHHHHHHHHhhCCcE-EEEEEEEE
Q 025214 45 SNEIVFKAMGRAINKTVTIVELIKRRIVGLH-QNTVIGST 83 (256)
Q Consensus 45 ~~eVvIkg~G~AIsKAV~VAEILKRRi~GLh-Q~t~I~tv 83 (256)
-..|+|-++|..+..|+..|++|+.+ |+. .+..+.++
T Consensus 9 g~di~iia~G~~~~~al~A~~~L~~~--Gi~~~vi~~~~i 46 (124)
T PF02780_consen 9 GADITIIAYGSMVEEALEAAEELEEE--GIKAGVIDLRTI 46 (124)
T ss_dssp SSSEEEEEETTHHHHHHHHHHHHHHT--TCEEEEEEEEEE
T ss_pred CCCEEEEeehHHHHHHHHHHHHHHHc--CCceeEEeeEEE
Confidence 47899999999999999999999986 544 44555555
No 14
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=37.57 E-value=88 Score=31.15 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=39.5
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC---hhHHHHHH
Q 025214 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG---RAINKTVT 62 (256)
Q Consensus 17 ~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G---~AIsKAV~ 62 (256)
+.--|=||.=+-....|..+...|+++++..+|+||.| +|+.|-|.
T Consensus 184 ~kp~I~iTmfGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~GG~aME~Li~ 232 (403)
T PF06792_consen 184 DKPLIGITMFGVTTPCVDAIRERLEEEGYEVLVFHATGTGGRAMERLIR 232 (403)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHH
Confidence 44578899988888999999999998899999999997 77777663
No 15
>PRK02399 hypothetical protein; Provisional
Probab=36.63 E-value=96 Score=30.95 Aligned_cols=45 Identities=31% Similarity=0.416 Sum_probs=37.2
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC---hhHHHHHH
Q 025214 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG---RAINKTVT 62 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G---~AIsKAV~ 62 (256)
.--|=||.=+-...+|..+...|++++++.+|+||.| +|+.+-|.
T Consensus 186 kp~Ig~TmfGvTtp~v~~~~~~Le~~GyEvlVFHATG~GGraME~Li~ 233 (406)
T PRK02399 186 KPLIGLTMFGVTTPCVQAAREELEARGYEVLVFHATGTGGRAMEKLID 233 (406)
T ss_pred CceEEEecCCCcHHHHHHHHHHHHhCCCeEEEEcCCCCchHHHHHHHH
Confidence 4467888877777999999999998899999999996 77776653
No 16
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=32.59 E-value=2.8e+02 Score=26.90 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhhCCCCeEEEEEc---------C-------hhHHHHHHHHHHHHHhhCCcEEEEEEEEEEeccc
Q 025214 29 MRSYITYAMTLLQERGSNEIVFKAM---------G-------RAINKTVTIVELIKRRIVGLHQNTVIGSTDITDT 88 (256)
Q Consensus 29 irnyV~~Ai~lL~e~g~~eVvIkg~---------G-------~AIsKAV~VAEILKRRi~GLhQ~t~I~tv~v~D~ 88 (256)
+...+..+..+++ .+.+.|.|.|. | .-|.+||. .||..||.|..++.++.-+-+++
T Consensus 53 ~d~l~~~v~~~~~-~Gi~~v~lFgv~~~~~KD~~gs~A~~~~g~v~~air---~iK~~~p~l~vi~DVclc~YT~h 124 (320)
T cd04823 53 IDELLKEAEEAVD-LGIPAVALFPVTPPELKSEDGSEAYNPDNLVCRAIR---AIKEAFPELGIITDVALDPYTSH 124 (320)
T ss_pred HHHHHHHHHHHHH-cCCCEEEEecCCCcccCCcccccccCCCChHHHHHH---HHHHhCCCcEEEEeeeccCCCCC
Confidence 5566666666666 79999999998 1 12566664 58999999998888876554443
No 17
>PTZ00070 40S ribosomal protein S2; Provisional
Probab=27.61 E-value=58 Score=30.57 Aligned_cols=6 Identities=83% Similarity=1.536 Sum_probs=2.2
Q ss_pred CccccC
Q 025214 157 RGRSRG 162 (256)
Q Consensus 157 rgrgrg 162 (256)
|||||+
T Consensus 20 ~g~~~~ 25 (257)
T PTZ00070 20 RGRGRG 25 (257)
T ss_pred CCCCCC
Confidence 333333
No 18
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.30 E-value=1.5e+02 Score=28.59 Aligned_cols=58 Identities=12% Similarity=0.350 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHhhCCCCeEEEEEcChhHHH---HHHHHHHHHHhhCCc-EEEEEEEEEEecc
Q 025214 28 RMRSYITYAMTLLQERGSNEIVFKAMGRAINK---TVTIVELIKRRIVGL-HQNTVIGSTDITD 87 (256)
Q Consensus 28 kirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsK---AV~VAEILKRRi~GL-hQ~t~I~tv~v~D 87 (256)
.|..+|..+...+. ...+.|++.|||...-+ .+....+|+..+ ++ +-.+.|+|.-+.+
T Consensus 133 EIv~qv~~~~~~~~-~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~-~i~~r~itvST~G~~~ 194 (345)
T PRK14457 133 EIVDQVLTVQEDMQ-RRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL-GIGQRRITVSTVGVPK 194 (345)
T ss_pred HHHHHHHHHHHHhc-CCCCEEEEEecCccccCHHHHHHHHHHHhccc-CCccCceEEECCCchh
Confidence 35555665555553 35899999999976554 445555555543 33 2355666654443
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=26.10 E-value=1.4e+02 Score=29.08 Aligned_cols=10 Identities=10% Similarity=0.311 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 025214 60 TVTIVELIKR 69 (256)
Q Consensus 60 AV~VAEILKR 69 (256)
|-.+++.|+.
T Consensus 258 ~~~l~~~L~~ 267 (456)
T PRK10590 258 ANHLAEQLNK 267 (456)
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 20
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=25.76 E-value=1.1e+02 Score=27.92 Aligned_cols=6 Identities=33% Similarity=0.362 Sum_probs=2.3
Q ss_pred EEEEEe
Q 025214 108 ITITLS 113 (256)
Q Consensus 108 I~ItLS 113 (256)
++|+|+
T Consensus 106 fsIK~~ 111 (215)
T KOG3262|consen 106 FSIKPS 111 (215)
T ss_pred EEEecC
Confidence 333333
No 21
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.57 E-value=1.7e+02 Score=28.67 Aligned_cols=81 Identities=21% Similarity=0.377 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHhhC-------CCCeEEEEEcChhHHH---HHHHHHHHHHhh---CCc-EEEEEEEEEEeccccccc-c
Q 025214 29 MRSYITYAMTLLQER-------GSNEIVFKAMGRAINK---TVTIVELIKRRI---VGL-HQNTVIGSTDITDTWEPL-E 93 (256)
Q Consensus 29 irnyV~~Ai~lL~e~-------g~~eVvIkg~G~AIsK---AV~VAEILKRRi---~GL-hQ~t~I~tv~v~D~~EP~-e 93 (256)
|-.+|..+...+.+. ..+.|||.|||...-+ .+...++|+... -++ +-.+.|+|+-+.....-+ +
T Consensus 154 Iv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~Gl~~~i~~la~ 233 (373)
T PRK14459 154 IVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVGLVPAIRKLAD 233 (373)
T ss_pred HHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcCchhHHHHHHH
Confidence 455666666666421 2567999999987654 555666666632 133 124566665433221111 2
Q ss_pred cCCCcceeeeeeeEEEEEEecccCCC
Q 025214 94 EGLLPLETTRHVSMITITLSKKELNR 119 (256)
Q Consensus 94 EGL~~~~~~R~VS~I~ItLSk~pLD~ 119 (256)
++++ +.|.||...+|.
T Consensus 234 ~~l~----------~~LavSLha~d~ 249 (373)
T PRK14459 234 EGLP----------VTLAVSLHAPDD 249 (373)
T ss_pred hcCC----------eEEEEEeCCCCH
Confidence 2221 447777776654
No 22
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=24.21 E-value=4e+02 Score=25.97 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=43.5
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcCh--------------hHHHHHHHHHHHHHhhCCcEEEEEEEEE
Q 025214 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGR--------------AINKTVTIVELIKRRIVGLHQNTVIGST 83 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~--------------AIsKAV~VAEILKRRi~GLhQ~t~I~tv 83 (256)
++.-|.+ +...+..+..+++ .+.+.|.|.|.-. -|.+||. .||..||+|..++.++.-
T Consensus 53 Pg~~r~s----id~l~~~~~~~~~-~Gi~~v~lFgv~~~Kd~~gs~A~~~~g~v~~air---~iK~~~pdl~vi~DVcLc 124 (322)
T PRK13384 53 PGISRLP----ESALADEIERLYA-LGIRYVMPFGISHHKDAKGSDTWDDNGLLARMVR---TIKAAVPEMMVIPDICFC 124 (322)
T ss_pred CCcceEC----HHHHHHHHHHHHH-cCCCEEEEeCCCCCCCCCcccccCCCChHHHHHH---HHHHHCCCeEEEeeeecc
Confidence 3444444 5566666666666 7999999988732 2566665 599999999988887765
Q ss_pred Eeccc
Q 025214 84 DITDT 88 (256)
Q Consensus 84 ~v~D~ 88 (256)
+-+++
T Consensus 125 ~YT~h 129 (322)
T PRK13384 125 EYTDH 129 (322)
T ss_pred cCCCC
Confidence 54443
No 23
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=3.7e+02 Score=23.99 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=44.4
Q ss_pred CCCCeEEEcCCCchh---HHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEE
Q 025214 16 IDENEIRITSQGRMR---SYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTV 79 (256)
Q Consensus 16 ~~~NeIrVt~kgkir---nyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~ 79 (256)
+.-.||+++-+-.-. -=+..|..+|++...=.|+|+-.|+.+...=.-..+|.+-...|..+..
T Consensus 88 i~vKEik~rp~Id~hD~~~K~k~~~rFLe~GdkVKvtirfrGRe~~h~elG~~~l~r~~~~~~~~~~ 154 (176)
T COG0290 88 IQVKEIKLRPKIDEHDYETKLKNARRFLEKGDKVKVTIRFRGREMAHQELGVKVLERVAEDLEDIAK 154 (176)
T ss_pred EEEEEEEeecCcCcchHHHHHHHHHHHHHCCCeEEEEEEEechhhhhHHHHHHHHHHHHHHhhhhhe
Confidence 344577777654434 4466777888876677899999999999988877777775554443333
No 24
>PRK05261 putative phosphoketolase; Provisional
Probab=22.99 E-value=1.3e+02 Score=32.45 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=28.1
Q ss_pred CeEEEEEcChhHHH-HHHHHHHHHHhhCCcE
Q 025214 46 NEIVFKAMGRAINK-TVTIVELIKRRIVGLH 75 (256)
Q Consensus 46 ~eVvIkg~G~AIsK-AV~VAEILKRRi~GLh 75 (256)
..|+|-|.|.-+.. |+.+|++|++.+|+|.
T Consensus 614 pDvvL~atGsev~leAlaAa~~L~~~~pgik 644 (785)
T PRK05261 614 PDVVLACAGDVPTLETLAAADLLREHFPDLK 644 (785)
T ss_pred CCEEEEEeCcHhhHHHHHHHHHHHhhCCCCC
Confidence 58999999999999 9999999999999875
No 25
>KOG2945 consensus Predicted RNA-binding protein [General function prediction only]
Probab=22.24 E-value=97 Score=30.53 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=3.6
Q ss_pred EEEEEEecc
Q 025214 107 MITITLSKK 115 (256)
Q Consensus 107 ~I~ItLSk~ 115 (256)
+|-|+-+++
T Consensus 288 ~~v~~~~k~ 296 (365)
T KOG2945|consen 288 TVVLHSSKD 296 (365)
T ss_pred ceeeecccc
Confidence 344444343
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=21.62 E-value=1.4e+02 Score=29.08 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=11.4
Q ss_pred HHHHHHHhhCCCCeEEEEEcC
Q 025214 34 TYAMTLLQERGSNEIVFKAMG 54 (256)
Q Consensus 34 ~~Ai~lL~e~g~~eVvIkg~G 54 (256)
.....+|.+.+...+.+||-=
T Consensus 259 ~~l~~~L~~~g~~~~~lhg~~ 279 (456)
T PRK10590 259 NHLAEQLNKDGIRSAAIHGNK 279 (456)
T ss_pred HHHHHHHHHCCCCEEEEECCC
Confidence 334445554566666677543
No 27
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.43 E-value=1.8e+02 Score=28.20 Aligned_cols=41 Identities=24% Similarity=0.368 Sum_probs=24.9
Q ss_pred hhHHHHHHHHHHh----hCCCCeEEEEEcChhHHH---HHHHHHHHHH
Q 025214 29 MRSYITYAMTLLQ----ERGSNEIVFKAMGRAINK---TVTIVELIKR 69 (256)
Q Consensus 29 irnyV~~Ai~lL~----e~g~~eVvIkg~G~AIsK---AV~VAEILKR 69 (256)
|-.+|..+...|. +.+.+.|+|.|||.-.-+ .+.++++|+.
T Consensus 154 I~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~ 201 (368)
T PRK14456 154 ITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEAVLTLST 201 (368)
T ss_pred HHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCHHHHHHHHHHHhc
Confidence 4455554444442 245899999999965433 4555556655
No 28
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=21.34 E-value=2.4e+02 Score=27.89 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=33.4
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHH---HHHHHHHHHHhhCCcEEEEE
Q 025214 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINK---TVTIVELIKRRIVGLHQNTV 79 (256)
Q Consensus 20 eIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsK---AV~VAEILKRRi~GLhQ~t~ 79 (256)
+|||-.. ...|+++-+++..++||+-|.|--... |.++-+..++.+.++.-.+.
T Consensus 117 dVriVYS------pldAl~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~ 173 (369)
T TIGR00075 117 DVRIVYS------PMDALKIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSA 173 (369)
T ss_pred CEEEEeC------HHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEe
Confidence 5665543 356777777777999999999955444 44444444454555554433
No 29
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=20.81 E-value=2.5e+02 Score=27.74 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=33.8
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHH---HhhCCcEEEEE
Q 025214 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIK---RRIVGLHQNTV 79 (256)
Q Consensus 20 eIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILK---RRi~GLhQ~t~ 79 (256)
+|||-.. ...|+++-+++..++||+-|.|--.....+.+.|++ ..+.++.-.+.
T Consensus 111 dVriVYS------pldAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~ 167 (364)
T PRK15062 111 DVRIVYS------PLDALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSS 167 (364)
T ss_pred CEEEEeC------HHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEe
Confidence 4666543 356777777778999999999955444444444444 45555554433
No 30
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=20.42 E-value=2.8e+02 Score=21.08 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHH
Q 025214 32 YITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKR 69 (256)
Q Consensus 32 yV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKR 69 (256)
.+..+.++|.+ .+.|.|.|.|....-|...+..|+.
T Consensus 2 ~i~~~~~~i~~--~~~i~i~g~g~s~~~a~~~~~~l~~ 37 (139)
T cd05013 2 ALEKAVDLLAK--ARRIYIFGVGSSGLVAEYLAYKLLR 37 (139)
T ss_pred HHHHHHHHHHh--CCEEEEEEcCchHHHHHHHHHHHHH
Confidence 46677788864 5899999999977777777777665
No 31
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=20.29 E-value=5.8e+02 Score=24.78 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcCh--------------hHHHHHHHHHHHHHhhCCcEEEEEEEEE
Q 025214 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGR--------------AINKTVTIVELIKRRIVGLHQNTVIGST 83 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~--------------AIsKAV~VAEILKRRi~GLhQ~t~I~tv 83 (256)
++.-|.+ +...+..+..+++ .+.+.|.|.+.-. -|.+|| ..||..||.|..++.++.-
T Consensus 43 PG~~r~s----~d~l~~~~~~~~~-~Gi~~v~LFgv~~~Kd~~gs~A~~~~g~v~~ai---r~iK~~~p~l~vi~DvcLc 114 (314)
T cd00384 43 PGVYRLS----VDSLVEEAEELAD-LGIRAVILFGIPEHKDEIGSEAYDPDGIVQRAI---RAIKEAVPELVVITDVCLC 114 (314)
T ss_pred CCceeeC----HHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCcccccCCCChHHHHH---HHHHHhCCCcEEEEeeecc
Confidence 4455554 5566777777776 7999999998831 145555 4589999999988888765
Q ss_pred Eeccc
Q 025214 84 DITDT 88 (256)
Q Consensus 84 ~v~D~ 88 (256)
+-+++
T Consensus 115 ~YT~h 119 (314)
T cd00384 115 EYTDH 119 (314)
T ss_pred CCCCC
Confidence 54443
No 32
>cd08982 GH43_3 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=20.16 E-value=1.1e+02 Score=28.21 Aligned_cols=38 Identities=16% Similarity=0.315 Sum_probs=26.5
Q ss_pred eeeeeEEEEEEecc---cCCCCCCCcCCCCCCCCCccCccc
Q 025214 102 TRHVSMITITLSKK---ELNRSSVGYQPPLPAEQVKPLIEF 139 (256)
Q Consensus 102 ~R~VS~I~ItLSk~---pLD~~~pGYQ~Pl~~~~vk~~~~~ 139 (256)
.|++-...|+...+ .++..-.+||.|||++++||+++.
T Consensus 248 ~R~~~i~pv~~~~dG~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (295)
T cd08982 248 ERRIGLFPAFFDEDGVLYCNTAFGDYPMILPDKKIDPPEDL 288 (295)
T ss_pred CceeEEEEEEECCCCcEEEcccCCcCcccCCCCCCcccccc
Confidence 35554445555433 256667799999999999998553
Done!