Query 025214
Match_columns 256
No_of_seqs 173 out of 347
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 05:53:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h9u_A DNA/RNA-binding protein 99.9 7.6E-26 2.6E-30 179.8 13.3 93 18-118 6-101 (102)
2 1nfj_A ALBA, conserved hypothe 99.9 8.7E-25 3E-29 169.8 12.5 87 16-114 1-89 (89)
3 2bky_A DNA/RNA-binding protein 99.9 2.5E-24 8.5E-29 169.7 13.2 89 15-115 6-97 (97)
4 1nh9_A MJA10B, DNA-binding pro 99.9 1.7E-24 5.8E-29 167.5 11.4 84 18-114 2-87 (87)
5 2bky_X DNA/RNA-binding protein 99.8 8.9E-21 3E-25 147.4 11.8 84 17-115 5-88 (89)
6 3toe_A MTH10B, DNA/RNA-binding 99.8 1.1E-20 3.9E-25 147.5 11.1 89 17-115 3-91 (91)
7 1vm0_A Unknown protein; struct 99.8 3.5E-18 1.2E-22 141.0 10.9 91 15-116 17-108 (130)
8 3iab_B Ribonucleases P/MRP pro 99.7 2.6E-16 8.8E-21 131.1 13.3 108 5-113 13-139 (140)
9 3iab_A Ribonucleases P/MRP pro 98.1 4.3E-05 1.5E-09 64.7 12.6 91 21-116 47-146 (158)
10 1b34_A Protein (small nuclear 93.0 0.018 6.2E-07 46.0 0.0 8 103-110 53-60 (119)
11 2ek0_A Stage V sporulation pro 72.7 30 0.001 26.5 11.5 51 19-71 2-53 (90)
12 1h2v_Z 20 kDa nuclear CAP bind 39.6 6.2 0.00021 30.9 0.0 14 45-58 39-52 (156)
13 2k9u_B Filamin-binding LIM pro 28.9 22 0.00077 21.3 1.2 14 101-114 6-19 (26)
14 1i96_V Translation initiation 23.9 2.1E+02 0.0071 21.4 6.2 51 20-70 4-57 (89)
15 1qys_A TOP7; alpha-beta, novel 22.7 1.5E+02 0.0052 22.5 5.1 55 20-74 20-74 (106)
No 1
>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*
Probab=99.93 E-value=7.6e-26 Score=179.83 Aligned_cols=93 Identities=34% Similarity=0.521 Sum_probs=85.2
Q ss_pred CCeEEEcCCCchhHHHHHHH-HHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhh-CCcE-EEEEEEEEEeccccccccc
Q 025214 18 ENEIRITSQGRMRSYITYAM-TLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEE 94 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai-~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi-~GLh-Q~t~I~tv~v~D~~EP~eE 94 (256)
+|+|+|++++. +|||.+|+ .||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|++++|+|| +
T Consensus 6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~ 80 (102)
T 2h9u_A 6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E 80 (102)
T ss_dssp CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence 59999999975 89999999 9999 68999999999999999999999999999 8999 999999999999754 5
Q ss_pred CCCcceeeeeeeEEEEEEecccCC
Q 025214 95 GLLPLETTRHVSMITITLSKKELN 118 (256)
Q Consensus 95 GL~~~~~~R~VS~I~ItLSk~pLD 118 (256)
|+. ++|+||+|+|+|++.|..
T Consensus 81 g~~---~~r~vS~IeI~Lsk~~~~ 101 (102)
T 2h9u_A 81 GQT---RTRRVSSIEICLEKAGES 101 (102)
T ss_dssp SCE---EEEEEEEEEEEEEECSSC
T ss_pred Ccc---ceeEeeeEEEEEEccCCC
Confidence 643 799999999999998754
No 2
>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*
Probab=99.92 E-value=8.7e-25 Score=169.79 Aligned_cols=87 Identities=30% Similarity=0.578 Sum_probs=79.7
Q ss_pred CCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhh-CCcE-EEEEEEEEEecccccccc
Q 025214 16 IDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLE 93 (256)
Q Consensus 16 ~~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi-~GLh-Q~t~I~tv~v~D~~EP~e 93 (256)
+++|+|+|++++ +++||.+|+.+|+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.+ +
T Consensus 1 ~~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e 73 (89)
T 1nfj_A 1 MAEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----E 73 (89)
T ss_dssp --CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----B
T ss_pred CCCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----C
Confidence 368999999987 9999999999999 68999999999999999999999999999 9999 999999998876 4
Q ss_pred cCCCcceeeeeeeEEEEEEec
Q 025214 94 EGLLPLETTRHVSMITITLSK 114 (256)
Q Consensus 94 EGL~~~~~~R~VS~I~ItLSk 114 (256)
|| .+|+||+|+|+|+|
T Consensus 74 ~g-----~~r~vs~IeI~L~k 89 (89)
T 1nfj_A 74 QG-----RRSNVSTIEIVLAK 89 (89)
T ss_dssp TT-----BCCEEEEEEEEEEC
T ss_pred CC-----cEEEeeEEEEEEEC
Confidence 55 68999999999986
No 3
>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A
Probab=99.92 E-value=2.5e-24 Score=169.71 Aligned_cols=89 Identities=37% Similarity=0.581 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhh-CC-c-EEEEEEEEEEecccccc
Q 025214 15 PIDENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VG-L-HQNTVIGSTDITDTWEP 91 (256)
Q Consensus 15 p~~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi-~G-L-hQ~t~I~tv~v~D~~EP 91 (256)
+.++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+|| ++ | ||.++|+|+++.|
T Consensus 6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~---- 79 (97)
T 2bky_A 6 PTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS---- 79 (97)
T ss_dssp ---CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred CCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence 5578999999998 9999999999999 68999999999999999999999999999 44 8 7999999999887
Q ss_pred cccCCCcceeeeeeeEEEEEEecc
Q 025214 92 LEEGLLPLETTRHVSMITITLSKK 115 (256)
Q Consensus 92 ~eEGL~~~~~~R~VS~I~ItLSk~ 115 (256)
+|| .+|+||+|+|+|+++
T Consensus 80 -e~G-----~~r~vS~IeI~L~k~ 97 (97)
T 2bky_A 80 -QDG-----RQSRVSTIEIAIRKK 97 (97)
T ss_dssp -TTS-----CEEEEEEEEEEEEEC
T ss_pred -CCC-----cEEEeeEEEEEEEcC
Confidence 455 689999999999974
No 4
>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1
Probab=99.91 E-value=1.7e-24 Score=167.52 Aligned_cols=84 Identities=31% Similarity=0.562 Sum_probs=73.9
Q ss_pred CCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhh-CCcE-EEEEEEEEEecccccccccC
Q 025214 18 ENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRI-VGLH-QNTVIGSTDITDTWEPLEEG 95 (256)
Q Consensus 18 ~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi-~GLh-Q~t~I~tv~v~D~~EP~eEG 95 (256)
+|+|+|+++ ++++||.+|+.||++ + ++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.| ++|
T Consensus 2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g 73 (87)
T 1nh9_A 2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG 73 (87)
T ss_dssp CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence 699999999 999999999999994 6 99999999999999999999999999 8899 999999998887 455
Q ss_pred CCcceeeeeeeEEEEEEec
Q 025214 96 LLPLETTRHVSMITITLSK 114 (256)
Q Consensus 96 L~~~~~~R~VS~I~ItLSk 114 (256)
.+|+||+|+|+|++
T Consensus 74 -----~~r~vS~IeI~L~k 87 (87)
T 1nh9_A 74 -----REVNVSTIEIVLAK 87 (87)
T ss_dssp ------CCCEEEEEEEEEC
T ss_pred -----cEEEeeEEEEEEEC
Confidence 68999999999986
No 5
>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A
Probab=99.85 E-value=8.9e-21 Score=147.40 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEEEEEEEecccccccccCC
Q 025214 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (256)
Q Consensus 17 ~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~I~tv~v~D~~EP~eEGL 96 (256)
++|.|+|+++ +++|||.+|+.+|+ +++++|+|||+|+||+|||+||||||+||.+++|+.+|.... |+
T Consensus 5 ~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~s--------e~-- 72 (89)
T 2bky_X 5 LNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGS--------EV-- 72 (89)
T ss_dssp CEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE--------EE--
T ss_pred CCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEecc--------cc--
Confidence 3456666665 99999999999999 689999999999999999999999999998889886644321 11
Q ss_pred CcceeeeeeeEEEEEEecc
Q 025214 97 LPLETTRHVSMITITLSKK 115 (256)
Q Consensus 97 ~~~~~~R~VS~I~ItLSk~ 115 (256)
..+|+||+|+|+|++.
T Consensus 73 ---~~~r~VS~IeI~L~k~ 88 (89)
T 2bky_X 73 ---RDRRRISYILLRLKRV 88 (89)
T ss_dssp ---ETTEEEEEEEEEEEEC
T ss_pred ---CcceEeeeEEEEEEec
Confidence 3579999999999974
No 6
>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.84 E-value=1.1e-20 Score=147.46 Aligned_cols=89 Identities=30% Similarity=0.450 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEEEEEEEecccccccccCC
Q 025214 17 DENEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLEEGL 96 (256)
Q Consensus 17 ~~NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~I~tv~v~D~~EP~eEGL 96 (256)
++|.|+|.++ ++++||.+|+.+|+ ++.++|+|||+|+||+|||+||||||+||... +++.++++.++|.+.++|
T Consensus 3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~---v~v~~I~I~se~~~~e~G- 76 (91)
T 3toe_A 3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFIPD---IQIENIDICTEEIIGNEG- 76 (91)
T ss_dssp --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTCTT---CEEEEEEEEEEEEECTTS-
T ss_pred ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHHHhccCC---cEEEEEEeeeEEeecCCC-
Confidence 4688999987 79999999999999 68999999999999999999999999999542 344445555567777777
Q ss_pred CcceeeeeeeEEEEEEecc
Q 025214 97 LPLETTRHVSMITITLSKK 115 (256)
Q Consensus 97 ~~~~~~R~VS~I~ItLSk~ 115 (256)
.+|+||+|+|+|+++
T Consensus 77 ----~~r~VS~IeI~L~k~ 91 (91)
T 3toe_A 77 ----TATNVSAIEIQLRKD 91 (91)
T ss_dssp ----SEEEEEEEEEEEEC-
T ss_pred ----ceeEeeEEEEEEECC
Confidence 789999999999985
No 7
>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A
Probab=99.76 E-value=3.5e-18 Score=140.98 Aligned_cols=91 Identities=25% Similarity=0.380 Sum_probs=73.3
Q ss_pred CCCCCeEEEcC-CCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEEEEEEEEEecccccccc
Q 025214 15 PIDENEIRITS-QGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQNTVIGSTDITDTWEPLE 93 (256)
Q Consensus 15 p~~~NeIrVt~-kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~t~I~tv~v~D~~EP~e 93 (256)
+.++|+|+|+. ++++++||.+|+.+|+ ++++|+|||||+||++||+||||||+|+-..++.+.|+|.++.++
T Consensus 17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~----- 89 (130)
T 1vm0_A 17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD----- 89 (130)
T ss_dssp --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence 44789999997 4789999999999998 589999999999999999999999999765667777788887652
Q ss_pred cCCCcceeeeeeeEEEEEEeccc
Q 025214 94 EGLLPLETTRHVSMITITLSKKE 116 (256)
Q Consensus 94 EGL~~~~~~R~VS~I~ItLSk~p 116 (256)
++ ....++|.|+|+|++.+
T Consensus 90 ~~----~r~v~~skIEI~L~k~~ 108 (130)
T 1vm0_A 90 AR----GRPVQKAKIEITLVKSE 108 (130)
T ss_dssp --------CEEEEEEEEEEEECT
T ss_pred CC----CcccccceEEEEEEecC
Confidence 11 13456799999999754
No 8
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.6e-16 Score=131.12 Aligned_cols=108 Identities=17% Similarity=0.179 Sum_probs=86.5
Q ss_pred eeccCCCCCCCCC----CCeEEEcCCCchhHHHHHHHHHHhh---CCCCeEEEEEcChhHHHHHHHHHHHHHhhCCcEEE
Q 025214 5 QRVEKPKAETPID----ENEIRITSQGRMRSYITYAMTLLQE---RGSNEIVFKAMGRAINKTVTIVELIKRRIVGLHQN 77 (256)
Q Consensus 5 ~rV~kp~~~~p~~----~NeIrVt~kgkirnyV~~Ai~lL~e---~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GLhQ~ 77 (256)
+.+.++.+..|.. +|+|+|++++++.+.|..|.+||+. .+.++|+|||||+||.||+++|..++++ .++...
T Consensus 13 k~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~-~~~~V~ 91 (140)
T 3iab_B 13 KRVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQ-KNKKIE 91 (140)
T ss_dssp -CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHT-TCCCEE
T ss_pred CccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhc-CCEEEE
Confidence 3344443344443 8999999999999999999999984 1689999999999999999999999997 468889
Q ss_pred EEEEEEEecccccccccC------------CCcceeeeeeeEEEEEEe
Q 025214 78 TVIGSTDITDTWEPLEEG------------LLPLETTRHVSMITITLS 113 (256)
Q Consensus 78 t~I~tv~v~D~~EP~eEG------------L~~~~~~R~VS~I~ItLS 113 (256)
+.++|+++.|+++|.++. .+....+|+||+|||.++
T Consensus 92 V~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy 139 (140)
T 3iab_B 92 VYTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY 139 (140)
T ss_dssp EEEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred EEeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence 999999999999998765 568889999999999986
No 9
>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}
Probab=98.11 E-value=4.3e-05 Score=64.65 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=70.4
Q ss_pred EEEcCCCchhHHHHHHHHHHhh-----CCCCeEEEEEcChhHHHHHHHHHHHHHhh----CCcEEEEEEEEEEecccccc
Q 025214 21 IRITSQGRMRSYITYAMTLLQE-----RGSNEIVFKAMGRAINKTVTIVELIKRRI----VGLHQNTVIGSTDITDTWEP 91 (256)
Q Consensus 21 IrVt~kgkirnyV~~Ai~lL~e-----~g~~eVvIkg~G~AIsKAV~VAEILKRRi----~GLhQ~t~I~tv~v~D~~EP 91 (256)
+.|+++..|+..|+.-.++|+. ...+.|.|.+.|..|.|++++.||+|.++ +.|||++++.+-.... |
T Consensus 47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~---~ 123 (158)
T 3iab_A 47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR---E 123 (158)
T ss_dssp EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC---c
Confidence 4499999999999999998841 24689999999999999999999999988 4599999998764332 1
Q ss_pred cccCCCcceeeeeeeEEEEEEeccc
Q 025214 92 LEEGLLPLETTRHVSMITITLSKKE 116 (256)
Q Consensus 92 ~eEGL~~~~~~R~VS~I~ItLSk~p 116 (256)
.-. +-++.+-+||-+-+.+++.+
T Consensus 124 grN--ELle~r~~vPILi~~i~~~~ 146 (158)
T 3iab_A 124 GRN--ELQEERLKVPILVTMVSDSE 146 (158)
T ss_dssp -------CCCCEEEEEEEEEEESSS
T ss_pred ccc--HHHHhhcCCCEEEEEEeccc
Confidence 111 12556779998888888764
No 10
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=92.95 E-value=0.018 Score=45.99 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.5
Q ss_pred eeeeEEEE
Q 025214 103 RHVSMITI 110 (256)
Q Consensus 103 R~VS~I~I 110 (256)
+++..|.|
T Consensus 53 ~~lg~v~I 60 (119)
T 1b34_A 53 VQLETLSI 60 (119)
T ss_dssp EEEEEEEE
T ss_pred eEcceEEE
Confidence 44444443
No 11
>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A
Probab=72.71 E-value=30 Score=26.54 Aligned_cols=51 Identities=24% Similarity=0.438 Sum_probs=39.0
Q ss_pred CeEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcC-hhHHHHHHHHHHHHHhh
Q 025214 19 NEIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMG-RAINKTVTIVELIKRRI 71 (256)
Q Consensus 19 NeIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G-~AIsKAV~VAEILKRRi 71 (256)
+.+.|.++++..+.-..--..|.+ ...|.|.++| .|++.||.-.-|-+.-+
T Consensus 2 e~LKVSs~S~P~~VAGAIA~~lRe--~~~veiqAIGa~AvNqAVKAIAIARg~l 53 (90)
T 2ek0_A 2 ETLRVSSKSRPNSVAGAIAAMLRT--KGEVEVQAIGPQAVNQAVKAIAIARGYI 53 (90)
T ss_dssp CEEEECTTCCHHHHHHHHHHHHHH--HSEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcCCCChHHHHHHHHHHHhc--CCceEEEEECHHHHHHHHHHHHHHHHhh
Confidence 468899998887777766667876 3699999999 67888887666655544
No 12
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=39.59 E-value=6.2 Score=30.89 Aligned_cols=14 Identities=7% Similarity=-0.035 Sum_probs=8.8
Q ss_pred CCeEEEEEcChhHH
Q 025214 45 SNEIVFKAMGRAIN 58 (256)
Q Consensus 45 ~~eVvIkg~G~AIs 58 (256)
...|.|..+-..++
T Consensus 39 ~~~l~V~nlp~~~t 52 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTT 52 (156)
T ss_dssp CCEEEEESCCTTCC
T ss_pred CCEEEEeCCCCCCC
Confidence 46677777765544
No 13
>2k9u_B Filamin-binding LIM protein 1; cytoskeletal complex, alternative splicing, cell adhesion, cell junction, cell shape, cytoplasm, cytoskeleton; NMR {Homo sapiens}
Probab=28.88 E-value=22 Score=21.33 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=12.1
Q ss_pred eeeeeeEEEEEEec
Q 025214 101 TTRHVSMITITLSK 114 (256)
Q Consensus 101 ~~R~VS~I~ItLSk 114 (256)
.+|.+|+|.|||..
T Consensus 6 eKR~aSSvFITLap 19 (26)
T 2k9u_B 6 EKRVASSVFITLAP 19 (26)
T ss_dssp SSSCEEEEEEEECC
T ss_pred hhheeeeEEEEecC
Confidence 47899999999984
No 14
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=23.92 E-value=2.1e+02 Score=21.41 Aligned_cols=51 Identities=14% Similarity=0.132 Sum_probs=32.6
Q ss_pred eEEEcCCCchhH---HHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHh
Q 025214 20 EIRITSQGRMRS---YITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRR 70 (256)
Q Consensus 20 eIrVt~kgkirn---yV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRR 70 (256)
||+++.+..-.. =+..|..+|++...=.|+|+=.|+.+...=.-.++|.+=
T Consensus 4 Eikl~p~Id~hD~~~K~k~a~~FL~~GdKVKvti~fRGRE~~h~e~g~~lL~r~ 57 (89)
T 1i96_V 4 SIKFRVKIDEHDYQTKLGHIKRFLQEGHKVKVTIMFRGREVAHPELGERILNRV 57 (89)
T ss_pred EEEecCCcCcchHHHHHHHHHHHHHCCCEEEEEEEECCccccCHHHHHHHHHHH
Confidence 566665433333 367788889866566788888898877544444455443
No 15
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=22.67 E-value=1.5e+02 Score=22.46 Aligned_cols=55 Identities=9% Similarity=0.283 Sum_probs=46.6
Q ss_pred eEEEcCCCchhHHHHHHHHHHhhCCCCeEEEEEcChhHHHHHHHHHHHHHhhCCc
Q 025214 20 EIRITSQGRMRSYITYAMTLLQERGSNEIVFKAMGRAINKTVTIVELIKRRIVGL 74 (256)
Q Consensus 20 eIrVt~kgkirnyV~~Ai~lL~e~g~~eVvIkg~G~AIsKAV~VAEILKRRi~GL 74 (256)
.-.||..+.+...+...+..+.+.+.+.|.|+-.-+.-..|-..|.||-.-|..|
T Consensus 20 tytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfael 74 (106)
T 1qys_A 20 TYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAEL 74 (106)
T ss_dssp EEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHh
Confidence 4568888889999999999888889999999988888888889999998887544
Done!