BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025215
         (256 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HCY|A Chain A, The Crystal Structure Of The Domain Of Putative
           Two-component Sensor Histidine Kinase Protein From
           Sinorhizobium Meliloti 1021
 pdb|3HCY|B Chain B, The Crystal Structure Of The Domain Of Putative
           Two-component Sensor Histidine Kinase Protein From
           Sinorhizobium Meliloti 1021
          Length = 151

 Score = 28.9 bits (63), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 6/87 (6%)

Query: 152 ADTILKKYSSTVATIFTGL----ASAALFGHTLTMNFI--LGISIVFISMHQFFSPLSKV 205
           ++ I + Y +T+  I   L    AS  LF    TM F+   G+S  +       SP    
Sbjct: 1   SNAIEEVYEATLDAIQGALNCDRASILLFDEAGTMRFVAARGLSEHYQRAVDGHSPWITG 60

Query: 206 KDEPKNISLESVDSPKNKRSKDTSFIG 232
            +EP+ I +E+VD  +  R    S +G
Sbjct: 61  ANEPEPIFVENVDDAEFSRELKESIVG 87


>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
 pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
           With Manganese And Udp
 pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
           With Manganese And Glucose Or A Glucal Species
 pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
           With Manganese And Glucose Or A Glucal Species
          Length = 263

 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 137 NNAAQGILSSFFFKYADTILKK-----YSSTVATIFTGLASAALFGHTLTMNFILG 187
           +   QGIL++FF  +A T ++K     Y+ +  +IF+ L +  +FG +  +   LG
Sbjct: 161 DGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIFSYLPAFKVFGASAKVVHFLG 216


>pdb|1UN8|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
           Freundii (Native Form)
 pdb|1UN8|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase Of C.
           Freundii (Native Form)
          Length = 552

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 133 LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFG 177
           L +    + G+L S FF  A   L++ ++ V  + TGLA    +G
Sbjct: 424 LTVVMGGSSGVLMSIFFTAAGQKLEQGANVVEALNTGLAQMKFYG 468


>pdb|1UN9|A Chain A, Crystal Structure Of The Dihydroxyacetone Kinase From C.
           Freundii In Complex With Amp-Pnp And Mg2+
 pdb|1UN9|B Chain B, Crystal Structure Of The Dihydroxyacetone Kinase From C.
           Freundii In Complex With Amp-Pnp And Mg2+
          Length = 552

 Score = 27.3 bits (59), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 133 LLICNNAAQGILSSFFFKYADTILKKYSSTVATIFTGLASAALFG 177
           L +    + G+L S FF  A   L++ ++ V  + TGLA    +G
Sbjct: 424 LTVVMGGSSGVLMSIFFTAAGQKLEQGANVVEALNTGLAQMKFYG 468


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,515,032
Number of Sequences: 62578
Number of extensions: 238649
Number of successful extensions: 567
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 7
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)