Query 025215
Match_columns 256
No_of_seqs 162 out of 831
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 05:55:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.1 4.1E-06 1.4E-10 65.7 5.2 67 136-202 38-105 (137)
2 3b5d_A Multidrug transporter E 97.7 0.00023 8E-09 53.4 9.8 63 139-201 41-104 (110)
3 3b5d_A Multidrug transporter E 97.0 0.0013 4.4E-08 49.3 6.0 42 3-44 64-105 (110)
4 2i68_A Protein EMRE; transmemb 96.6 0.0014 4.9E-08 51.1 3.8 42 3-44 64-105 (137)
5 3b9w_A Ammonium transporter fa 61.9 92 0.0031 28.1 12.7 73 8-82 150-229 (407)
6 3dh4_A Sodium/glucose cotransp 14.4 6.8E+02 0.023 22.7 12.5 13 72-84 343-355 (530)
7 2l2t_A Receptor tyrosine-prote 13.4 1.5E+02 0.0053 17.8 2.7 13 189-201 24-36 (44)
8 3lk4_C CD2-associated protein; 9.8 2E+02 0.0068 15.7 2.0 14 240-253 11-24 (29)
9 2dw3_A Intrinsic membrane prot 9.3 4.6E+02 0.016 17.7 4.6 30 180-209 32-62 (77)
10 2ks1_B Epidermal growth factor 9.1 2.5E+02 0.0085 16.8 2.5 13 189-201 25-37 (44)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.07 E-value=4.1e-06 Score=65.73 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=42.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCC
Q 025215 136 CNNAAQGILSSFFFKYADTILK-KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSPL 202 (256)
Q Consensus 136 ~~~a~~g~~v~~v~ky~~~i~k-~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~~ 202 (256)
+..++...+....+|+.+.-.. .+-+.+.++++.++++++|||++++.+++|.++++.|+++.+..+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3444445555566666554433 333678999999999999999999999999999999999987653
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.74 E-value=0.00023 Score=53.41 Aligned_cols=63 Identities=21% Similarity=0.214 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCC
Q 025215 139 AAQGILSSFFFKYADTILK-KYSSTVATIFTGLASAALFGHTLTMNFILGISIVFISMHQFFSP 201 (256)
Q Consensus 139 a~~g~~v~~v~ky~~~i~k-~~a~~~s~v~t~lls~~lfge~lt~~~~iG~~lVi~gv~ly~~~ 201 (256)
.+...+....+|+.+.-.. +.-+.+.++++.+++.++|||+++..+++|.++++.|+++.+..
T Consensus 41 ~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3344445556666553333 33357899999999999999999999999999999999988764
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=96.99 E-value=0.0013 Score=49.27 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=38.1
Q ss_pred cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215 3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 44 (256)
Q Consensus 3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~ 44 (256)
..+.++.+++++++++||++++.||.++.++++|+..+...+
T Consensus 64 ~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred hhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 356789999999999999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=96.62 E-value=0.0014 Score=51.08 Aligned_cols=42 Identities=21% Similarity=0.293 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhHhccCC
Q 025215 3 SNLKVFVIALLLKIIMKRRFSIIQWEALALLLIGISVNQLRS 44 (256)
Q Consensus 3 ~q~kil~talls~l~Lk~rls~~qw~al~l~~~Gv~iv~~~~ 44 (256)
..+.++++++++++++||++++.||+|++++++|+.++...+
T Consensus 64 ~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 64 SGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 356789999999999999999999999999999999987654
No 5
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=61.87 E-value=92 Score=28.11 Aligned_cols=73 Identities=14% Similarity=0.036 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhCCCCCH-----HHHHHHHHHHHHHhH--hccCCCCCCCCCCCCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 025215 8 FVIALLLKIIMKRRFSI-----IQWEALALLLIGISV--NQLRSLPEGTSALGLPVATGAYLYTLIFVTVPSLASVFNEY 80 (256)
Q Consensus 8 l~talls~l~Lk~rls~-----~qw~al~l~~~Gv~i--v~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sala~V~~e~ 80 (256)
-..++...++|+||..+ .+--.+.+.++|..+ +.+.+.+.+- ..+ .......+=+.++...+++.....++
T Consensus 150 G~~aLa~a~~LG~R~~~~~~~~~~~hn~~~~~lGt~lLW~GWfGFN~Gl-~~~-~~~~~a~~NT~lAaaag~l~~~~~~~ 227 (407)
T 3b9w_A 150 AYFGLGVSIALTTAAQRAQPIESDATSDRFSMLGSMVLWLFWPSFATAI-VPF-EQMPQTIVNTLLALCGATLATYFLSA 227 (407)
T ss_dssp HHHHHHHHHHHCCHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHTT-SCG-GGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCccccCCCCcCCCCCHHHHHHHHHHHHHHHHhhhhhh-ccc-hhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35677788888877432 123345556666544 3333322110 001 11122444556677777777777776
Q ss_pred Hh
Q 025215 81 AL 82 (256)
Q Consensus 81 ~l 82 (256)
..
T Consensus 228 ~~ 229 (407)
T 3b9w_A 228 LF 229 (407)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=14.43 E-value=6.8e+02 Score=22.71 Aligned_cols=13 Identities=31% Similarity=0.340 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhc
Q 025215 72 SLASVFNEYALKS 84 (256)
Q Consensus 72 ala~V~~e~~lk~ 84 (256)
+.++++.+-++|+
T Consensus 343 s~st~~~~Diy~~ 355 (530)
T 3dh4_A 343 STATIFTMDIYKE 355 (530)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HhHHHHHhHHHHH
Confidence 4555666766665
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.40 E-value=1.5e+02 Score=17.80 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=7.0
Q ss_pred HHHHHHHHhhcCC
Q 025215 189 SIVFISMHQFFSP 201 (256)
Q Consensus 189 ~lVi~gv~ly~~~ 201 (256)
+++..+.++|.+.
T Consensus 24 ~ii~~~~~~~~RR 36 (44)
T 2l2t_A 24 VIVGLTFAVYVRR 36 (44)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 3444555666654
No 8
>3lk4_C CD2-associated protein; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Homo sapiens}
Probab=9.76 E-value=2e+02 Score=15.73 Aligned_cols=14 Identities=29% Similarity=0.306 Sum_probs=10.6
Q ss_pred ccCCcccCCCCCCC
Q 025215 240 DASHRAVNEEKAPL 253 (256)
Q Consensus 240 ~~~~~~~~~~~~~~ 253 (256)
.-+|.+.+++|.|=
T Consensus 11 klshPTa~RpK~~g 24 (29)
T 3lk4_C 11 NLLHLTANRPKMPG 24 (29)
T ss_dssp CCCCGGGGSCCCCC
T ss_pred cccCCcccCccccC
Confidence 45888888888763
No 9
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=9.28 E-value=4.6e+02 Score=17.67 Aligned_cols=30 Identities=7% Similarity=0.001 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHhhcCC-CCCCCCCC
Q 025215 180 LTMNFILGISIVFISMHQFFSP-LSKVKDEP 209 (256)
Q Consensus 180 lt~~~~iG~~lVi~gv~ly~~~-~~~~~~~~ 209 (256)
....+++|..+++.+.+..... +++.|..|
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP 62 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQAP 62 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccCC
Confidence 3444455566666666555432 24444444
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=9.13 E-value=2.5e+02 Score=16.83 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=6.6
Q ss_pred HHHHHHHHhhcCC
Q 025215 189 SIVFISMHQFFSP 201 (256)
Q Consensus 189 ~lVi~gv~ly~~~ 201 (256)
+++.++.++|.+-
T Consensus 25 ~ii~~~~~~~~RR 37 (44)
T 2ks1_B 25 LVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhh
Confidence 3444555666553
Done!