Query 025215
Match_columns 256
No_of_seqs 162 out of 831
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 05:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025215.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025215hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 5.5 5.6E+02 0.041 19.1 16.4 17 23-39 20-36 (447)
2 d1a87a_ f.1.1.1 (A:) Colicin N 5.3 4.6E+02 0.034 20.2 5.3 36 30-72 243-278 (297)
3 d1v54k_ f.23.5.1 (K:) Mitochon 4.6 1.6E+02 0.011 16.6 1.4 24 177-200 5-28 (49)
4 d2e74g1 f.23.26.1 (G:9-35) Pet 4.1 1.5E+02 0.011 14.2 0.9 16 185-200 2-17 (27)
5 d1wfia_ b.15.1.4 (A:) Nuclear 3.0 5E+02 0.036 16.9 3.3 22 223-244 104-125 (131)
6 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.6 7.8E+02 0.057 18.1 4.5 23 57-79 56-78 (248)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 2.4 4.6E+02 0.033 13.3 1.8 11 191-201 17-27 (34)
8 d1vf5c3 f.23.23.1 (C:250-286) 2.0 6.1E+02 0.044 13.1 2.7 18 60-77 8-25 (37)
9 d2cuqa1 g.39.1.3 (A:43-74) Fou 1.9 2.6E+02 0.019 14.2 0.2 12 241-252 10-21 (32)
10 d2b9va1 b.18.1.13 (A:435-666) 1.8 4.2E+02 0.031 19.2 1.6 15 241-255 141-155 (232)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.52 E-value=5.6e+02 Score=19.08 Aligned_cols=17 Identities=12% Similarity=0.512 Sum_probs=9.9
Q ss_pred CHHHHHHHHHHHHHHhH
Q 025215 23 SIIQWEALALLLIGISV 39 (256)
Q Consensus 23 s~~qw~al~l~~~Gv~i 39 (256)
.+.||.-+.+++++...
T Consensus 20 ~~~~w~i~~~~~~~~~~ 36 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAA 36 (447)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34567766666665443
No 2
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=5.29 E-value=4.6e+02 Score=20.25 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHHHHhHhccCCCCCCCCCCCCChhhhHHHHHHHHHHHHH
Q 025215 30 LALLLIGISVNQLRSLPEGTSALGLPVATGAYLYTLIFVTVPS 72 (256)
Q Consensus 30 l~l~~~Gv~iv~~~~~~~~~~~~~~~~~~~G~l~~l~a~~~sa 72 (256)
+++.++++++-.+... +.|...+|+..+++.+.+++
T Consensus 243 vva~~FS~il~~la~t-------glpvtilG~agImiva~V~A 278 (297)
T d1a87a_ 243 VAISLFGAVLSFLPIS-------GLAVTALGVIGIMTISYLSS 278 (297)
T ss_dssp HHHHHHHHHHHTCCCT-------TCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc-------ccchHHHHHHHHHHHHHHHH
Confidence 4444555544433332 44555567776665544443
No 3
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.62 E-value=1.6e+02 Score=16.64 Aligned_cols=24 Identities=0% Similarity=0.061 Sum_probs=16.3
Q ss_pred CCcchHHHHHHHHHHHHHHHhhcC
Q 025215 177 GHTLTMNFILGISIVFISMHQFFS 200 (256)
Q Consensus 177 ge~lt~~~~iG~~lVi~gv~ly~~ 200 (256)
+++-.-..++|++...+++|.|..
T Consensus 5 HdKYGn~vL~~Ga~fc~avW~yv~ 28 (49)
T d1v54k_ 5 HDKYGNAVLASGATFCVAVWVYMA 28 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCcEEEecccchhhhhhhhee
Confidence 334445567788888888888754
No 4
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=4.14 E-value=1.5e+02 Score=14.22 Aligned_cols=16 Identities=13% Similarity=0.283 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhhcC
Q 025215 185 ILGISIVFISMHQFFS 200 (256)
Q Consensus 185 ~iG~~lVi~gv~ly~~ 200 (256)
++|..++-.+-..|..
T Consensus 2 vlgli~~tl~glf~aa 17 (27)
T d2e74g1 2 VLGLVFATLGGLFYAA 17 (27)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHH
Confidence 4566666666555544
No 5
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.95 E-value=5e+02 Score=16.93 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=12.2
Q ss_pred CCCCCCcccccCCCCCcccCCc
Q 025215 223 KRSKDTSFIGMAAGANEDASHR 244 (256)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~ 244 (256)
.++.++..-.+++.|+|..+..
T Consensus 104 ~~~~~~~~~~l~d~D~et~~~i 125 (131)
T d1wfia_ 104 TKKINPENSKLSDLDSETRSMV 125 (131)
T ss_dssp CSSSSCCCCSCCCCCCCCCCCC
T ss_pred HhHcCcccCCCccCCHHHHHhh
Confidence 4455555556677776544433
No 6
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.63 E-value=7.8e+02 Score=18.13 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=18.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 025215 57 ATGAYLYTLIFVTVPSLASVFNE 79 (256)
Q Consensus 57 ~~~G~l~~l~a~~~sala~V~~e 79 (256)
..+|++++++-++...++.++.-
T Consensus 56 i~PG~~~l~~Fvi~Pi~yT~~ia 78 (248)
T d2r6gf1 56 VYPGMAGMGLFVLFPLVCTIAIA 78 (248)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHGG
T ss_pred hhhHHHHHHHHHHHhheeEEEEE
Confidence 44699999999888888777763
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.40 E-value=4.6e+02 Score=13.30 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=7.0
Q ss_pred HHHHHHhhcCC
Q 025215 191 VFISMHQFFSP 201 (256)
Q Consensus 191 Vi~gv~ly~~~ 201 (256)
.+.|++.|...
T Consensus 17 ~~vG~FfYGsY 27 (34)
T d2axtj1 17 VIVGLFFYGAY 27 (34)
T ss_dssp HHHHHHHHHTT
T ss_pred hheeeeeeeee
Confidence 34677777654
No 8
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=1.95 E-value=6.1e+02 Score=13.12 Aligned_cols=18 Identities=11% Similarity=0.181 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025215 60 AYLYTLIFVTVPSLASVF 77 (256)
Q Consensus 60 G~l~~l~a~~~sala~V~ 77 (256)
|++..+++.++.=+.-|+
T Consensus 8 gl~~F~~~v~laQi~lVl 25 (37)
T d1vf5c3 8 WMIAFICLVMLAQLMLIL 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455445444444443343
No 9
>d2cuqa1 g.39.1.3 (A:43-74) Four and a half LIM domains 3, FHL3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.88 E-value=2.6e+02 Score=14.21 Aligned_cols=12 Identities=17% Similarity=0.437 Sum_probs=6.6
Q ss_pred cCCcccCCCCCC
Q 025215 241 ASHRAVNEEKAP 252 (256)
Q Consensus 241 ~~~~~~~~~~~~ 252 (256)
+..|++|++..|
T Consensus 10 aGqrFTSrde~p 21 (32)
T d2cuqa1 10 AGQQFTSRDEDP 21 (32)
T ss_dssp TTCCEEECSSSE
T ss_pred cCCccccCCCCc
Confidence 455666555554
No 10
>d2b9va1 b.18.1.13 (A:435-666) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]}
Probab=1.84 E-value=4.2e+02 Score=19.24 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=11.6
Q ss_pred cCCcccCCCCCCCCC
Q 025215 241 ASHRAVNEEKAPLLP 255 (256)
Q Consensus 241 ~~~~~~~~~~~~~~~ 255 (256)
++||.++++++|+-|
T Consensus 141 ~s~R~~~~~~~~~~p 155 (232)
T d2b9va1 141 GRYRKDFAKPEALQP 155 (232)
T ss_dssp GGGSSCSSSCCCCCT
T ss_pred eeccccccCccccCC
Confidence 567888888888766
Done!