Query 025219
Match_columns 256
No_of_seqs 238 out of 1377
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 05:59:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ixd_A LMBE-related protein; h 100.0 9.7E-36 3.3E-40 260.9 18.8 166 39-235 3-182 (242)
2 1q74_A 1D-MYO-inosityl 2-aceta 100.0 9.1E-36 3.1E-40 268.9 19.1 130 39-170 4-161 (303)
3 3dfi_A Pseudoaglycone deacetyl 100.0 2.4E-36 8.3E-41 268.6 14.0 188 38-235 6-233 (270)
4 1uan_A Hypothetical protein TT 100.0 2.3E-35 7.8E-40 256.1 18.1 163 40-233 2-178 (227)
5 3dff_A Teicoplanin pseudoaglyc 100.0 4.2E-36 1.4E-40 267.4 13.2 188 38-235 6-236 (273)
6 3ih5_A Electron transfer flavo 92.8 0.29 9.9E-06 41.2 7.3 88 40-145 4-98 (217)
7 3tsa_A SPNG, NDP-rhamnosyltran 89.6 1.7 6E-05 38.2 9.5 35 40-74 2-36 (391)
8 3otg_A CALG1; calicheamicin, T 87.3 1.3 4.5E-05 39.2 7.1 38 37-74 18-55 (412)
9 2iw1_A Lipopolysaccharide core 85.4 3.6 0.00012 35.5 8.8 84 40-147 1-89 (374)
10 1f0k_A MURG, UDP-N-acetylgluco 85.1 4.2 0.00014 35.1 9.1 86 40-146 7-104 (364)
11 1vgv_A UDP-N-acetylglucosamine 84.7 3.5 0.00012 35.9 8.5 91 40-145 1-93 (384)
12 3oti_A CALG3; calicheamicin, T 83.8 5.9 0.0002 34.9 9.7 39 37-75 18-56 (398)
13 1efv_A Electron transfer flavo 83.5 6.4 0.00022 34.8 9.6 92 40-146 2-94 (315)
14 4fzr_A SSFS6; structural genom 83.1 5.5 0.00019 35.1 9.2 38 37-74 13-50 (398)
15 3ia7_A CALG4; glycosysltransfe 82.0 5.1 0.00018 35.0 8.4 35 40-74 5-39 (402)
16 3okp_A GDP-mannose-dependent a 81.7 12 0.00041 32.3 10.7 89 39-147 4-95 (394)
17 1v4v_A UDP-N-acetylglucosamine 81.2 5.9 0.0002 34.4 8.5 92 40-145 6-98 (376)
18 3rsc_A CALG2; TDP, enediyne, s 80.5 5.6 0.00019 35.2 8.2 37 38-74 19-55 (415)
19 1efp_B ETF, protein (electron 80.5 7.1 0.00024 33.3 8.5 82 48-146 36-121 (252)
20 1o97_C Electron transferring f 79.4 5.1 0.00017 34.5 7.2 82 47-146 35-120 (264)
21 3auf_A Glycinamide ribonucleot 78.2 17 0.0006 30.4 10.1 95 30-146 13-109 (229)
22 1efv_B Electron transfer flavo 77.3 6.6 0.00023 33.6 7.3 82 48-146 39-124 (255)
23 4gi5_A Quinone reductase; prot 77.3 1.8 6.2E-05 37.7 3.8 39 37-77 20-63 (280)
24 2x6q_A Trehalose-synthase TRET 74.0 2.8 9.5E-05 37.1 4.2 38 38-78 39-81 (416)
25 1o97_D Electron transferring f 70.7 8.1 0.00028 34.2 6.4 85 42-146 3-95 (320)
26 2iyf_A OLED, oleandomycin glyc 70.7 23 0.00078 31.3 9.5 34 40-74 8-42 (430)
27 3fet_A Electron transfer flavo 70.3 28 0.00095 27.5 9.0 74 39-145 3-76 (166)
28 3ot5_A UDP-N-acetylglucosamine 68.9 23 0.00077 31.8 9.2 92 41-145 29-121 (403)
29 3beo_A UDP-N-acetylglucosamine 68.5 14 0.00047 31.8 7.4 93 39-145 8-102 (375)
30 3av3_A Phosphoribosylglycinami 68.3 45 0.0015 27.4 10.2 85 40-146 4-90 (212)
31 2iuy_A Avigt4, glycosyltransfe 67.9 15 0.00051 31.3 7.4 19 129-147 75-93 (342)
32 3k4h_A Putative transcriptiona 66.7 18 0.00063 29.8 7.6 98 62-179 125-226 (292)
33 3d8u_A PURR transcriptional re 66.5 37 0.0013 27.6 9.4 98 62-179 114-215 (275)
34 2pjk_A 178AA long hypothetical 66.1 10 0.00036 30.4 5.6 65 69-145 15-88 (178)
35 3o74_A Fructose transport syst 65.6 22 0.00075 29.0 7.8 97 61-179 113-213 (272)
36 3s2u_A UDP-N-acetylglucosamine 65.0 18 0.00063 31.8 7.6 17 129-145 83-99 (365)
37 3e3m_A Transcriptional regulat 65.0 59 0.002 27.9 10.9 99 61-178 180-283 (355)
38 1meo_A Phosophoribosylglycinam 64.5 11 0.00037 31.2 5.6 44 93-146 44-87 (209)
39 2o20_A Catabolite control prot 63.0 24 0.00083 30.0 7.9 97 61-178 173-272 (332)
40 3dzc_A UDP-N-acetylglucosamine 62.9 52 0.0018 29.2 10.3 91 40-145 26-118 (396)
41 4hg6_A Cellulose synthase subu 62.0 80 0.0027 31.1 12.3 61 40-100 140-214 (802)
42 3kbq_A Protein TA0487; structu 61.7 30 0.001 27.7 7.6 62 89-168 26-89 (172)
43 2ywr_A Phosphoribosylglycinami 61.7 66 0.0023 26.4 10.3 85 40-146 2-88 (216)
44 2h0a_A TTHA0807, transcription 61.4 35 0.0012 27.8 8.3 98 61-179 107-214 (276)
45 3jvd_A Transcriptional regulat 60.0 36 0.0012 29.1 8.4 95 62-179 168-265 (333)
46 1fmt_A Methionyl-tRNA FMet for 59.9 35 0.0012 29.9 8.3 85 39-146 3-89 (314)
47 3h75_A Periplasmic sugar-bindi 59.8 70 0.0024 27.2 10.3 93 68-180 144-240 (350)
48 3hcw_A Maltose operon transcri 59.7 36 0.0012 28.3 8.2 95 62-179 125-226 (295)
49 3qk7_A Transcriptional regulat 59.0 30 0.001 28.8 7.6 98 62-179 120-221 (294)
50 2c2x_A Methylenetetrahydrofola 56.6 72 0.0025 27.6 9.6 89 59-161 22-111 (281)
51 3gv0_A Transcriptional regulat 56.6 47 0.0016 27.4 8.4 98 62-179 121-222 (288)
52 1jkx_A GART;, phosphoribosylgl 56.4 67 0.0023 26.3 9.1 45 92-146 43-87 (212)
53 2l82_A Designed protein OR32; 56.0 61 0.0021 24.2 9.3 76 40-138 78-153 (162)
54 3tqq_A Methionyl-tRNA formyltr 55.7 46 0.0016 29.1 8.4 85 39-146 2-88 (314)
55 2qu7_A Putative transcriptiona 55.4 36 0.0012 28.0 7.4 99 61-179 115-221 (288)
56 3g85_A Transcriptional regulat 54.7 28 0.00096 28.7 6.6 77 84-179 142-222 (289)
57 1efp_A ETF, protein (electron 53.6 48 0.0016 29.0 8.1 86 42-146 2-90 (307)
58 3gxh_A Putative phosphatase (D 53.1 74 0.0025 24.3 9.9 82 43-145 22-103 (157)
59 2fvy_A D-galactose-binding per 52.9 69 0.0024 26.4 8.9 92 66-178 138-233 (309)
60 3ha2_A NADPH-quinone reductase 52.5 17 0.00059 29.0 4.7 37 40-77 1-38 (177)
61 2rgy_A Transcriptional regulat 52.4 54 0.0018 27.1 8.1 98 61-178 121-222 (290)
62 3m9w_A D-xylose-binding peripl 52.2 64 0.0022 26.9 8.6 100 62-178 116-219 (313)
63 2iya_A OLEI, oleandomycin glyc 51.3 78 0.0027 27.8 9.4 35 39-74 12-47 (424)
64 3dbi_A Sugar-binding transcrip 51.1 49 0.0017 28.1 7.8 100 60-179 173-276 (338)
65 3h5t_A Transcriptional regulat 50.9 98 0.0034 26.5 9.8 78 83-178 220-301 (366)
66 3rfo_A Methionyl-tRNA formyltr 50.3 66 0.0023 28.2 8.5 85 39-146 4-90 (317)
67 1dbq_A Purine repressor; trans 50.3 44 0.0015 27.4 7.1 98 62-179 120-221 (289)
68 3q0i_A Methionyl-tRNA formyltr 50.1 46 0.0016 29.2 7.4 85 39-146 7-93 (318)
69 3k9c_A Transcriptional regulat 48.9 95 0.0032 25.5 9.1 96 61-178 119-218 (289)
70 3gyb_A Transcriptional regulat 48.6 83 0.0028 25.5 8.6 96 62-180 112-211 (280)
71 3p2o_A Bifunctional protein fo 48.2 97 0.0033 26.8 9.1 88 60-161 24-112 (285)
72 1mkz_A Molybdenum cofactor bio 48.0 52 0.0018 25.9 6.9 63 71-145 12-76 (172)
73 3bbl_A Regulatory protein of L 47.9 50 0.0017 27.2 7.2 76 84-179 140-222 (287)
74 4ds3_A Phosphoribosylglycinami 47.9 77 0.0026 26.0 8.1 44 93-146 51-94 (209)
75 4b4u_A Bifunctional protein fo 47.8 74 0.0025 27.9 8.3 80 67-160 51-131 (303)
76 3clk_A Transcription regulator 47.0 68 0.0023 26.3 7.9 98 62-179 119-219 (290)
77 3h5o_A Transcriptional regulat 46.6 1.1E+02 0.0037 25.9 9.3 98 61-178 171-272 (339)
78 3miz_A Putative transcriptiona 46.6 29 0.001 28.9 5.5 92 61-171 124-220 (301)
79 3l6u_A ABC-type sugar transpor 46.4 1.1E+02 0.0038 24.8 9.1 92 67-179 129-226 (293)
80 3kjx_A Transcriptional regulat 46.2 71 0.0024 27.1 8.0 76 84-178 201-280 (344)
81 1zl0_A Hypothetical protein PA 45.6 88 0.003 27.3 8.5 63 36-100 14-81 (311)
82 3kke_A LACI family transcripti 45.6 54 0.0018 27.3 7.0 98 62-179 125-231 (303)
83 3ksm_A ABC-type sugar transpor 45.4 1.2E+02 0.004 24.4 9.0 97 62-180 117-220 (276)
84 3c3k_A Alanine racemase; struc 45.1 88 0.003 25.6 8.3 94 62-178 118-217 (285)
85 1pdo_A Mannose permease; phosp 45.1 72 0.0025 23.9 7.0 65 71-150 3-70 (135)
86 1di6_A MOGA, molybdenum cofact 44.4 44 0.0015 27.2 6.0 24 122-145 50-73 (195)
87 1w1z_A Delta-aminolevulinic ac 44.2 95 0.0032 27.5 8.3 87 58-146 20-123 (328)
88 3g1w_A Sugar ABC transporter; 44.2 1.3E+02 0.0044 24.7 9.2 98 62-180 119-220 (305)
89 3d02_A Putative LACI-type tran 44.0 1.3E+02 0.0045 24.5 10.1 111 49-179 107-221 (303)
90 4e5s_A MCCFLIKE protein (BA_56 43.7 70 0.0024 28.1 7.6 63 36-100 9-79 (331)
91 3lfh_A Manxa, phosphotransfera 43.4 82 0.0028 24.1 7.2 67 69-150 3-73 (144)
92 3l49_A ABC sugar (ribose) tran 43.4 1.3E+02 0.0045 24.4 9.3 99 62-179 117-222 (291)
93 1jye_A Lactose operon represso 43.3 1.1E+02 0.0036 26.2 8.7 95 62-178 173-271 (349)
94 2pbq_A Molybdenum cofactor bio 41.9 56 0.0019 25.9 6.2 41 122-166 52-93 (178)
95 1y5e_A Molybdenum cofactor bio 41.7 76 0.0026 24.8 6.9 44 90-145 35-79 (169)
96 1a4i_A Methylenetetrahydrofola 41.4 88 0.003 27.3 7.8 87 60-160 24-115 (301)
97 3f2v_A General stress protein 41.4 25 0.00084 28.5 4.0 38 40-77 2-40 (192)
98 4af8_A Metacaspase MCA2; hydro 40.8 68 0.0023 28.8 7.1 56 90-145 118-174 (367)
99 1qpz_A PURA, protein (purine n 40.7 63 0.0022 27.4 6.8 97 62-178 171-271 (340)
100 2hsg_A Glucose-resistance amyl 40.6 54 0.0019 27.7 6.3 89 62-171 171-262 (332)
101 3gbv_A Putative LACI-family tr 40.4 95 0.0033 25.3 7.7 99 62-180 127-231 (304)
102 4h1h_A LMO1638 protein; MCCF-l 40.4 84 0.0029 27.4 7.6 63 36-100 9-79 (327)
103 2iks_A DNA-binding transcripti 39.9 74 0.0025 26.2 7.0 73 61-145 131-204 (293)
104 3tqr_A Phosphoribosylglycinami 39.5 1E+02 0.0035 25.3 7.6 44 93-146 48-91 (215)
105 4hwg_A UDP-N-acetylglucosamine 39.3 96 0.0033 27.5 8.0 91 40-146 11-102 (385)
106 3cs3_A Sugar-binding transcrip 37.7 1.2E+02 0.004 24.6 7.8 66 84-171 133-200 (277)
107 2bln_A Protein YFBG; transfera 37.7 50 0.0017 28.7 5.6 82 41-146 2-83 (305)
108 3brq_A HTH-type transcriptiona 37.7 94 0.0032 25.3 7.2 74 62-145 133-207 (296)
109 1c3p_A Protein (HDLP (histone 36.9 29 0.00099 31.3 4.0 27 126-154 235-261 (375)
110 2fep_A Catabolite control prot 36.8 58 0.002 26.9 5.8 97 62-178 127-228 (289)
111 3rjz_A N-type ATP pyrophosphat 36.5 42 0.0014 28.3 4.7 75 59-145 20-97 (237)
112 4fs3_A Enoyl-[acyl-carrier-pro 36.1 1.4E+02 0.0049 24.4 8.2 88 37-145 4-93 (256)
113 1b0a_A Protein (fold bifunctio 35.8 83 0.0029 27.3 6.7 86 60-159 23-110 (288)
114 1mio_B Nitrogenase molybdenum 35.4 2.6E+02 0.0087 25.4 10.5 81 38-145 311-392 (458)
115 3l07_A Bifunctional protein fo 35.2 1.3E+02 0.0045 26.0 7.8 88 60-161 24-113 (285)
116 3tla_A MCCF; serine protease, 35.2 62 0.0021 29.1 5.9 60 36-97 40-107 (371)
117 1qgu_B Protein (nitrogenase mo 34.8 2.8E+02 0.0095 25.8 10.7 84 37-145 358-441 (519)
118 2dri_A D-ribose-binding protei 34.2 1.8E+02 0.0062 23.4 10.1 74 84-178 138-212 (271)
119 3bil_A Probable LACI-family tr 34.0 2E+02 0.0069 24.3 9.1 96 61-179 177-275 (348)
120 3u7q_B Nitrogenase molybdenum- 33.8 2.8E+02 0.0096 25.9 10.5 82 37-145 362-445 (523)
121 4a5o_A Bifunctional protein fo 33.7 2.1E+02 0.0071 24.7 8.9 86 60-159 25-112 (286)
122 3egc_A Putative ribose operon 33.7 65 0.0022 26.4 5.6 99 61-180 118-221 (291)
123 2h3h_A Sugar ABC transporter, 33.1 1.8E+02 0.0062 24.0 8.5 96 62-179 115-214 (313)
124 2hma_A Probable tRNA (5-methyl 33.0 99 0.0034 27.6 7.0 62 42-111 13-79 (376)
125 1g8l_A Molybdopterin biosynthe 32.9 1.5E+02 0.0052 26.8 8.3 57 91-165 209-267 (411)
126 3tem_A Ribosyldihydronicotinam 32.9 34 0.0011 28.3 3.6 37 39-77 1-42 (228)
127 1byk_A Protein (trehalose oper 32.9 1.2E+02 0.0041 24.1 7.1 96 60-179 107-203 (255)
128 3rfq_A Pterin-4-alpha-carbinol 32.8 85 0.0029 25.2 5.9 81 68-165 29-113 (185)
129 1l6s_A Porphobilinogen synthas 32.8 1.2E+02 0.004 26.8 7.0 75 70-146 31-117 (323)
130 2jjm_A Glycosyl transferase, g 32.7 1.3E+02 0.0043 25.8 7.5 22 125-146 86-107 (394)
131 2is8_A Molybdopterin biosynthe 32.2 42 0.0014 26.2 3.8 41 122-166 46-87 (164)
132 4a26_A Putative C-1-tetrahydro 31.7 1.3E+02 0.0045 26.2 7.3 87 60-160 26-115 (300)
133 3ipr_A PTS system, IIA compone 31.5 1.4E+02 0.0048 22.8 6.8 65 71-150 3-70 (150)
134 3sr3_A Microcin immunity prote 31.3 83 0.0029 27.7 6.1 63 36-100 10-80 (336)
135 3lm8_A Thiamine pyrophosphokin 31.3 1.6E+02 0.0054 24.2 7.5 88 52-161 27-114 (222)
136 2p10_A MLL9387 protein; putati 31.2 2.5E+02 0.0086 24.3 8.9 73 58-145 154-232 (286)
137 4fe7_A Xylose operon regulator 30.1 2.8E+02 0.0094 24.2 10.2 76 61-145 132-210 (412)
138 1uuy_A CNX1, molybdopterin bio 29.8 92 0.0031 24.2 5.5 41 122-166 55-96 (167)
139 1zz1_A Histone deacetylase-lik 29.8 30 0.001 31.2 2.9 39 128-168 247-297 (369)
140 3ew8_A HD8, histone deacetylas 29.6 42 0.0014 30.5 3.8 28 126-155 244-271 (388)
141 3kcq_A Phosphoribosylglycinami 29.2 1.6E+02 0.0055 24.2 7.1 39 93-146 52-90 (215)
142 3tb6_A Arabinose metabolism tr 29.2 77 0.0026 25.8 5.3 99 61-178 130-234 (298)
143 1jlj_A Gephyrin; globular alph 29.1 94 0.0032 24.9 5.6 24 122-145 62-85 (189)
144 3iuu_A MLRC-like, putative met 28.9 3.6E+02 0.012 25.1 11.4 104 56-168 48-178 (495)
145 1z7e_A Protein aRNA; rossmann 28.7 84 0.0029 29.9 6.0 72 56-146 12-83 (660)
146 4a69_A Histone deacetylase 3,; 28.4 33 0.0011 31.0 2.9 27 126-154 236-262 (376)
147 3v2g_A 3-oxoacyl-[acyl-carrier 28.4 2.5E+02 0.0085 23.1 9.6 86 37-145 29-116 (271)
148 2fn9_A Ribose ABC transporter, 28.2 2E+02 0.0068 23.2 7.7 91 67-178 128-221 (290)
149 4amg_A Snogd; transferase, pol 27.9 72 0.0025 27.4 5.1 37 37-74 20-57 (400)
150 1sfs_A Hypothetical protein; s 27.9 1.6E+02 0.0054 24.9 6.9 55 59-113 74-130 (240)
151 3obk_A Delta-aminolevulinic ac 27.7 1.7E+02 0.0059 26.1 7.3 88 57-146 29-134 (356)
152 3iwt_A 178AA long hypothetical 27.5 2E+02 0.0069 22.2 7.3 43 91-145 45-88 (178)
153 2xcz_A Possible ATLS1-like lig 26.7 65 0.0022 23.1 3.9 57 42-106 37-96 (115)
154 2vqm_A HD4, histone deacetylas 26.6 30 0.001 31.6 2.3 27 126-154 267-293 (413)
155 3bed_A PTS system, IIA compone 26.5 1.2E+02 0.004 22.9 5.5 66 70-150 6-73 (142)
156 3rpe_A MDAB, modulator of drug 26.4 62 0.0021 26.7 4.1 42 37-78 23-71 (218)
157 3p9x_A Phosphoribosylglycinami 26.0 2.7E+02 0.0092 22.7 10.3 46 91-146 44-89 (211)
158 3da8_A Probable 5'-phosphoribo 25.9 1.8E+02 0.0061 23.9 6.8 58 69-146 40-97 (215)
159 2der_A TRNA-specific 2-thiouri 25.8 1.5E+02 0.005 26.5 6.8 62 42-111 21-87 (380)
160 3ctp_A Periplasmic binding pro 25.8 56 0.0019 27.6 3.9 41 61-102 165-205 (330)
161 1vbk_A Hypothetical protein PH 25.7 1.1E+02 0.0038 26.4 5.8 81 33-145 173-262 (307)
162 3max_A HD2, histone deacetylas 25.6 40 0.0014 30.4 2.9 28 126-155 235-262 (367)
163 2qh8_A Uncharacterized protein 25.6 2.4E+02 0.0081 23.3 7.8 73 56-145 126-200 (302)
164 3qi7_A Putative transcriptiona 25.4 2.7E+02 0.0092 24.9 8.4 45 57-101 143-190 (371)
165 3i1j_A Oxidoreductase, short c 25.0 2.6E+02 0.0088 22.2 8.3 88 37-145 12-101 (247)
166 1hjr_A Holliday junction resol 24.8 2.2E+02 0.0074 22.2 6.8 23 124-146 45-67 (158)
167 1w5q_A Delta-aminolevulinic ac 24.8 2.5E+02 0.0087 24.8 7.8 88 57-146 21-127 (337)
168 3fy4_A 6-4 photolyase; DNA rep 24.7 2.5E+02 0.0087 26.3 8.5 92 57-169 20-130 (537)
169 8abp_A L-arabinose-binding pro 24.7 2.3E+02 0.0079 23.0 7.5 93 69-180 134-231 (306)
170 1vl2_A Argininosuccinate synth 24.5 1.5E+02 0.005 27.2 6.5 78 60-144 31-126 (421)
171 4hcj_A THIJ/PFPI domain protei 24.2 57 0.0019 25.8 3.3 41 38-78 6-46 (177)
172 3fro_A GLGA glycogen synthase; 24.1 88 0.003 27.0 4.9 41 39-79 2-47 (439)
173 2gek_A Phosphatidylinositol ma 24.1 69 0.0024 27.4 4.2 43 37-79 18-64 (406)
174 1gud_A ALBP, D-allose-binding 23.6 2.9E+02 0.01 22.4 8.0 96 61-178 123-224 (288)
175 2pqp_A HD7A, histone deacetyla 23.6 39 0.0013 31.1 2.5 27 127-155 297-323 (421)
176 3r3s_A Oxidoreductase; structu 23.4 3.2E+02 0.011 22.7 8.6 86 38-145 48-135 (294)
177 3hnn_A Putative diflavin flavo 23.4 49 0.0017 27.4 2.9 35 125-165 66-101 (262)
178 3s5j_B Ribose-phosphate pyroph 23.4 1.8E+02 0.0061 25.6 6.7 95 37-145 211-315 (326)
179 2lpm_A Two-component response 23.2 76 0.0026 23.4 3.7 55 38-110 7-61 (123)
180 2wkb_A Macrophage migration in 22.9 54 0.0018 24.2 2.8 58 41-106 36-96 (125)
181 2ioy_A Periplasmic sugar-bindi 22.5 3E+02 0.01 22.1 10.6 96 62-178 115-213 (283)
182 3o38_A Short chain dehydrogena 22.3 2.7E+02 0.0092 22.4 7.4 87 37-145 20-108 (266)
183 3mc3_A DSRE/DSRF-like family p 22.0 98 0.0033 23.1 4.2 41 38-78 14-57 (134)
184 1edz_A 5,10-methylenetetrahydr 22.0 2.7E+02 0.0092 24.3 7.5 83 60-159 25-110 (320)
185 3ihk_A Thiamin pyrophosphokina 22.0 3.2E+02 0.011 22.2 7.9 91 51-162 20-110 (218)
186 1h7n_A 5-aminolaevulinic acid 21.9 3.3E+02 0.011 24.1 8.0 87 58-146 25-131 (342)
187 2rjo_A Twin-arginine transloca 21.9 3.4E+02 0.012 22.5 8.3 106 49-178 116-228 (332)
188 4dik_A Flavoprotein; TM0755, e 21.9 27 0.00093 31.7 1.0 36 124-165 75-111 (410)
189 3k31_A Enoyl-(acyl-carrier-pro 21.7 3.3E+02 0.011 22.6 8.0 86 37-145 28-115 (296)
190 4h08_A Putative hydrolase; GDS 21.5 2.7E+02 0.0092 21.1 7.5 35 38-75 19-53 (200)
191 1hfo_A Migration inhibitory fa 21.5 42 0.0014 24.1 1.9 58 41-106 35-95 (113)
192 4da9_A Short-chain dehydrogena 21.0 3.5E+02 0.012 22.2 9.3 86 37-145 27-114 (280)
193 1pv8_A Delta-aminolevulinic ac 20.8 1.9E+02 0.0066 25.5 6.2 87 58-146 14-120 (330)
194 2hl0_A Threonyl-tRNA synthetas 20.8 1.3E+02 0.0043 23.4 4.5 57 84-145 57-116 (143)
195 3men_A Acetylpolyamine aminohy 20.8 63 0.0021 29.1 3.2 28 127-156 280-307 (362)
196 1uls_A Putative 3-oxoacyl-acyl 20.7 3.3E+02 0.011 21.8 7.8 78 39-145 5-84 (245)
197 4dyv_A Short-chain dehydrogena 20.6 3.5E+02 0.012 22.1 8.1 81 38-145 27-109 (272)
198 1tjy_A Sugar transport protein 20.5 3.6E+02 0.012 22.2 8.6 94 66-179 126-220 (316)
199 4e3z_A Putative oxidoreductase 20.3 3.5E+02 0.012 21.9 9.4 85 38-145 25-111 (272)
200 3q9b_A Acetylpolyamine amidohy 20.3 58 0.002 29.0 2.8 27 127-155 262-288 (341)
201 4fak_A Ribosomal RNA large sub 20.2 2.6E+02 0.0088 22.0 6.4 80 68-156 35-120 (163)
202 3is3_A 17BETA-hydroxysteroid d 20.2 3.5E+02 0.012 21.9 9.6 86 37-145 16-103 (270)
203 3ftp_A 3-oxoacyl-[acyl-carrier 20.1 3.6E+02 0.012 22.1 7.8 85 37-145 26-112 (270)
204 4ep4_A Crossover junction endo 20.1 1.9E+02 0.0066 22.7 5.7 24 124-147 49-72 (166)
No 1
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=100.00 E-value=9.7e-36 Score=260.86 Aligned_cols=166 Identities=13% Similarity=0.116 Sum_probs=135.0
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
++++|+|+||||||+|||||||++++++|.+|++||+|+|+.+. .+++|++|+++||++||+ +.+.+|++||..
T Consensus 3 ~~~vL~v~aHPDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv--~~~~~L~~~D~~-- 78 (242)
T 2ixd_A 3 GLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGV--KTRLNLAMPDRG-- 78 (242)
T ss_dssp CCSEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTC--CEEEEEEECTTC--
T ss_pred CccEEEEEeCCChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCC--CeEEECCCCCCC--
Confidence 46899999999999999999999999999999999999999863 568999999999999999 557899999864
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC------------CceeEEEecchh
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE------------RNIEAWELMTTN 184 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~------------~~~~~~e~~s~~ 184 (256)
+ .+.+++.+.|.++|++++||+|+||+ +.|+|+||+++++++.+|++..+. +.++.|+.
T Consensus 79 ~---~~~~~~~~~l~~~ir~~~PdvV~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~y~~---- 149 (242)
T 2ixd_A 79 L---YMKEEYIREIVKVIRTYKPKLVFAPY--YEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMI---- 149 (242)
T ss_dssp C---CCCHHHHHHHHHHHHHHCCSEEEEEC--SCSSSHHHHHHHHHHHHHHHHHTCTTSSTTSCCCCCSEEEEECC----
T ss_pred C---CChHHHHHHHHHHHHHcCCCEEEECC--CCCCChhHHHHHHHHHHHHHHcCCccccCcCCCCCcceEEEEec----
Confidence 2 23478899999999999999999995 568999999999999999754331 12222221
Q ss_pred hhhhcCCChhhHHHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhhhH
Q 025219 185 ILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWF 235 (256)
Q Consensus 185 ~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~w~ 235 (256)
+. ...++..+.++...++|++||++|+||+.+.
T Consensus 150 ----~~--------------~~~p~~~vdis~~~~~K~~Al~~h~SQ~~~~ 182 (242)
T 2ixd_A 150 ----NG--------------FHKPNFCIDISEYLSIKVEALEAYESQFSTG 182 (242)
T ss_dssp ----SS--------------CCCCSEEEECGGGHHHHHHHHHTCHHHHCCT
T ss_pred ----cC--------------CCCCCEEEECcHHHHHHHHHHHHHHHhccCC
Confidence 00 0113445566667899999999999999853
No 2
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=100.00 E-value=9.1e-36 Score=268.92 Aligned_cols=130 Identities=24% Similarity=0.259 Sum_probs=114.3
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC----------------CchHHHHHHHHHHHHHcCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD----------------GMGNIRKDELHRACAVLKIPL 102 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~----------------~~~~~R~~E~~~A~~~LGv~~ 102 (256)
.+++|+|+||||||+|||||||++++++|++|++||+|+|+.+ +++.+|++|+++||++||+
T Consensus 4 ~~~vL~v~AHPDDe~l~~ggtla~~~~~G~~V~vv~lT~Ge~g~~~~~~~~~~~~~~~~~l~~~R~~E~~~A~~~LGv-- 81 (303)
T 1q74_A 4 TPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGV-- 81 (303)
T ss_dssp CCEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESCCCTTCCCSSSTTGGGSTTTTCCHHHHHHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeCCchHHHhHHHHHHHHHHCCCcEEEEEEcCCCCCCCCChhhhccccccHHHHHHHHHHHHHHHHHHhCC--
Confidence 5689999999999999999999999999999999999999853 2458999999999999999
Q ss_pred CcEEEcc----CCCCCCC-------c-cccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhc
Q 025219 103 EQVKVLD----LVDFQDG-------F-DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGT 170 (256)
Q Consensus 103 ~~~~~l~----~~d~~dg-------~-~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~ 170 (256)
.++.+|+ |+|..-. + ...|+.+++++.|+++|++++||+|+|||++|.|+|+||+++++++.+|++..
T Consensus 82 ~~~~~L~~~~~~~D~~l~~~~~~~~p~~~~~~~~~~~~~l~~~ir~~rP~vV~t~~p~g~~~HpDH~~~~~~~~~A~~~a 161 (303)
T 1q74_A 82 SAPIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGALVAIIRELRPHVVVTYDPNGGYGHPDHVHTHTVTTAAVAAA 161 (303)
T ss_dssp CCCEETTSTTSSBCCCCC----CCSCBGGGSCHHHHHHHHHHHHHHHCCSEEEEECTTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CeeEECCCCCcCCCCCCCCCccccCcccccCCHHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 5678998 8885311 0 02357889999999999999999999999999999999999999999998653
No 3
>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}
Probab=100.00 E-value=2.4e-36 Score=268.57 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=135.5
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--------------------chHHHHHHHHHHHHH
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--------------------MGNIRKDELHRACAV 97 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~--------------------~~~~R~~E~~~A~~~ 97 (256)
.++++|+|+||||||+|||||||++++++|.+|++|++|+|+.+. ++.+|++|+++||++
T Consensus 6 ~~~rvLvv~aHPDDe~l~~GGtia~~~~~G~~V~vv~~T~Ge~g~~~~~~a~~~~~~~g~~~~~~l~~~R~~E~~~A~~~ 85 (270)
T 3dfi_A 6 DRTRILAISPHLDDAVLSVGASLAQAEQDGGKVTVFTVFAGSAAPPYSPAAERFHARWGLSPTEDAPLRRRNEDIAALDQ 85 (270)
T ss_dssp CCSEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEESSCCCCCSSCCHHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCchHHHhhHHHHHHHHhCCCeEEEEEEeCCCCCCCcchhhhhcccccCCChHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999998752 568999999999999
Q ss_pred cCCCCCcEEEcc-----CCCCC--C-C----ccccCC-------hHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHH
Q 025219 98 LKIPLEQVKVLD-----LVDFQ--D-G----FDKLWN-------HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRD 158 (256)
Q Consensus 98 LGv~~~~~~~l~-----~~d~~--d-g----~~~~~~-------~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~ 158 (256)
||++..++.||| +||.. + . +...+. .+++.+.|.++|++++||+|+|| ++.|+|+||++
T Consensus 86 LGv~~~~~~fld~~~~~~pDg~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~l~~~ir~~~PdvV~t~--~~~d~HpDH~~ 163 (270)
T 3dfi_A 86 LGAGHRHGRFLDAIYRRSPDGQWLLHHNEGSMVRQQSPANNHDLVAAIREDIESMIAECDPTLVLTC--VAIGKHPDHKA 163 (270)
T ss_dssp HTCEEEECCCCCGGGC-----------------------CHHHHHHHHHHHHHHHHHHHCCSEEEEE--CCTTCCHHHHH
T ss_pred cCCCccccccCCccccCCCCCCcccccCccccccccCcccccchHHHHHHHHHHHHHHcCCCEEEeC--CCCCCChhHHH
Confidence 999543345675 66542 0 0 000111 25889999999999999999999 78999999999
Q ss_pred HHHHHHHHHhhcCCCceeEEEecchhhhhhcCCChhhHHHhhhhhcccCCceeEEEcCC-HHHHHHHHHhchhhhhhH
Q 025219 159 VHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEH-PKKSFLAMSQHHSQWVWF 235 (256)
Q Consensus 159 v~~av~~a~~~~~~~~~~~~e~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~-~~~K~~Am~~H~SQ~~w~ 235 (256)
+++++.+|++..+ ..+.+||.....++++.... .+ ..+ ....+..+.++.. .++|++||+||+||+..+
T Consensus 164 ~~~a~~~A~~~~~-~~~~~~e~~p~~~~~~~~~~--~~-~~~----~~~~p~~vdis~~~~~~K~~Al~ay~SQ~~~~ 233 (270)
T 3dfi_A 164 TRDATLLAARERG-IPLRLWQDLPYAAYSQDLAE--LP-DGL----RLGSPELSFVDEEARTRKFQAMKHYATQLSVL 233 (270)
T ss_dssp HHHHHHHHHHHTT-CCEEEECCTTHHHHSCCCCC--CC-TTE----EECCCEEEECCHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCeeEecccceEeccCCChh--hc-CCC----cCCCCeEEeCCHHHHHHHHHHHHHhhhhcccc
Confidence 9999999987654 34567876543333221100 00 000 0001233445544 689999999999999864
No 4
>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1
Probab=100.00 E-value=2.3e-35 Score=256.13 Aligned_cols=163 Identities=13% Similarity=0.071 Sum_probs=132.5
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (256)
.++|+|+||||||++||||||+++.++|.+|+++|+|+|+.+. ..++|++|+++||++||+ +.+.+|++||.. +
T Consensus 2 ~~vL~v~aHPDDe~l~~ggtia~~~~~G~~v~vv~lT~G~~g~~~~~~~R~~E~~~A~~~lG~--~~~~~l~~~D~~--l 77 (227)
T 1uan_A 2 LDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGL--DFRGNLGFPDGG--L 77 (227)
T ss_dssp EEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTC--SEEEEEEECTTC--C
T ss_pred ceEEEEEeCCCcHHHhHHHHHHHHHhCCCcEEEEEEcCCCCCCCCCHHHHHHHHHHHHHhcCC--CeEEECCCCCCC--C
Confidence 5799999999999999999999999999999999999999863 468999999999999999 567899999853 2
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCCC------------ceeEEEecchhh
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSER------------NIEAWELMTTNI 185 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~------------~~~~~e~~s~~~ 185 (256)
.+.+++.+.|.++|++++||+|+||+ +.|+|+||+++++++.+|++....+ .++.|+.
T Consensus 78 ---~~~~~~~~~l~~~ir~~~P~~V~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~~~~----- 147 (227)
T 1uan_A 78 ---ADVPEQRLKLAQALRRLRPRVVFAPL--EADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPG----- 147 (227)
T ss_dssp ---CCCHHHHHHHHHHHHHHCEEEEEEEC--SCCSSHHHHHHHHHHHHHHHHHTCTTSSCSSCCCCCSEEEEECC-----
T ss_pred ---CChHHHHHHHHHHHHHhCCCEEEeCC--CCCCChHHHHHHHHHHHHHHHcCCCcccCCCCCCccceEEEEec-----
Confidence 24578899999999999999999994 5789999999999999998643311 1222211
Q ss_pred hhhcCCChhhHHHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhh
Q 025219 186 LRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWV 233 (256)
Q Consensus 186 ~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~ 233 (256)
+. ...++..+.++...++|++||++|+||+.
T Consensus 148 ----------~~-------~~~p~~~vdis~~~~~K~~Al~~h~SQ~~ 178 (227)
T 1uan_A 148 ----------NH-------PFAPSFLVKISAFIDQWEAAVLAYRSQFT 178 (227)
T ss_dssp ----------SS-------CCCCSEEEECGGGHHHHHHHHHTCHHHHC
T ss_pred ----------cC-------CCCCCEEEECcHHHHHHHHHHHHHHHhcc
Confidence 00 01134455566667999999999999986
No 5
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=100.00 E-value=4.2e-36 Score=267.45 Aligned_cols=188 Identities=16% Similarity=0.164 Sum_probs=135.9
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--------------------chHHHHHHHHHHHHH
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--------------------MGNIRKDELHRACAV 97 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~--------------------~~~~R~~E~~~A~~~ 97 (256)
.++++|+|+||||||+|||||||++++++|.+|++||+|+|+.+. ++++|++|+++||++
T Consensus 6 ~~~rvLvv~aHPDDe~lg~GGtia~~~~~G~~V~vv~~T~G~~g~~~~~~~~~~~~~~g~~~~~~l~~~R~~E~~~A~~~ 85 (273)
T 3dff_A 6 GATRLLAISPHLDDAVLSFGAGLAQAAQDGANVLVYTVFAGAAQPPYSPAAQRMHTIWGLAPDDDAVLYRRKEDIAALDH 85 (273)
T ss_dssp --CEEEEEESSTTHHHHHHHHHHHHHHHTTCEEEEEETTCCCCCSSCCHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCChHHHhHHHHHHHHHHCCCcEEEEEEeCCCCCCCCchhhhhcccccCCChhhHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999999999998742 578999999999999
Q ss_pred cCCCCCcEEEcc-----CCCCCC---Ccc---ccCC-----------hHHHHHHHHHHHHhcCCCEEEecCCCCCCCCch
Q 025219 98 LKIPLEQVKVLD-----LVDFQD---GFD---KLWN-----------HKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (256)
Q Consensus 98 LGv~~~~~~~l~-----~~d~~d---g~~---~~~~-----------~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (256)
||++..++.|+| +||..- ++. ..|. .+++.+.|.++|++++||+|+|| +|.|+|+|
T Consensus 86 LGv~~~~l~~ld~~~~~~pDg~~~~~~~~~~~~l~~~~~~p~~~~~~~~~l~~~l~~~ir~~~PdvV~t~--~~~d~HpD 163 (273)
T 3dff_A 86 LRVAHRHGRFLDSIYRKLPDGRWLTAHVEGRQKLAVNDHSPDSDHDLVGEVADDIRSIIDEFDPTLVVTC--AAIGEHPD 163 (273)
T ss_dssp TTCEEEECCCCCGGGCBCTTSSBSEECCTTCSSCEECCCCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEE--CCTTCCHH
T ss_pred hCCCceeecccccccccCCCCccccccccchhhhhccccCcccccchHHHHHHHHHHHHHHcCCCEEEEC--CCCCCChH
Confidence 999533344565 555320 000 1221 36889999999999999999998 78999999
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEecchhhhhhcCCChhhHHHhhhhhcccCCceeEEEcCC-HHHHHHHHHhchhhhhh
Q 025219 156 HRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEH-PKKSFLAMSQHHSQWVW 234 (256)
Q Consensus 156 H~~v~~av~~a~~~~~~~~~~~~e~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~-~~~K~~Am~~H~SQ~~w 234 (256)
|+++++++.+|++..+ ..+.+||.....++++-.. ..+. .+ . ...+..+.++.. .++|++||+||+||+.+
T Consensus 164 H~~~~~a~~~A~~~~~-~~~~~~e~~~~~~~~~~~~--~~~~-~~---~-~~~p~~v~i~~~~~~~K~~Al~ay~SQ~~~ 235 (273)
T 3dff_A 164 HEATRDAALFATHEKN-VPVRLWEDLPYAVFKSGAV--ELPQ-GF---R-LGSADVSSVKPEMRSQKFQAVERYSSQMVL 235 (273)
T ss_dssp HHHHHHHHHHHHHHHT-CCEEEECCTTGGGTSCCCC--CCCT-TE---E-ECCCEECCBCHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHHHHcC-CCEEEecccchhhcCCCCc--cccc-cc---c-cCCCeEEECCHHHHHHHHHHHHHHhhhCCc
Confidence 9999999999987654 3467787543332221110 0000 00 0 001222234433 68999999999999986
Q ss_pred H
Q 025219 235 F 235 (256)
Q Consensus 235 ~ 235 (256)
+
T Consensus 236 l 236 (273)
T 3dff_A 236 L 236 (273)
T ss_dssp H
T ss_pred c
Confidence 4
No 6
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=92.76 E-value=0.29 Score=41.18 Aligned_cols=88 Identities=9% Similarity=0.131 Sum_probs=58.3
Q ss_pred CcEEEEecCchh-------hhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025219 40 KNVLLVIAHPDD-------ESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (256)
Q Consensus 40 ~~vLvv~aHPDD-------E~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (256)
+.+|+++=|.|. |.++.+-.|+. +.|.+|+++++-.+ . ++..+.+..+|+ ++++..+.+.
T Consensus 4 ~~ilV~~E~~~g~l~~~s~ell~~A~~La~--~~g~~v~av~~G~~-~--------~~~~~~~~~~Ga--d~v~~v~~~~ 70 (217)
T 3ih5_A 4 NNLFVYCEIEEGIVADVSLELLTKGRSLAN--ELNCQLEAVVAGTG-L--------KEIEKQILPYGV--DKLHVFDAEG 70 (217)
T ss_dssp CCEEEECCEETTEECHHHHHHHHHHHHHHH--HHTCCEEEEEEESC-C--------TTTHHHHGGGTC--SEEEEEECGG
T ss_pred ccEEEEEECcCCEECHHHHHHHHHHHHHHH--hcCCeEEEEEECCC-H--------HHHHHHHHhcCC--CEEEEecCcc
Confidence 569999999654 44433332222 23778988888543 1 112223334699 7888888665
Q ss_pred CCCCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 113 FQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 113 ~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
+. .++.+.....|.+++++.+||+|++.
T Consensus 71 ~~-----~~~~~~~a~~l~~~i~~~~p~~Vl~g 98 (217)
T 3ih5_A 71 LY-----PYTSLPHTSILVNLFKEEQPQICLMG 98 (217)
T ss_dssp GS-----SCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 42 23567788899999999999999998
No 7
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=89.64 E-value=1.7 Score=38.21 Aligned_cols=35 Identities=23% Similarity=0.165 Sum_probs=26.5
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
+|||+++.----....+-+....|.++|++|.+++
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~ 36 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAA 36 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEE
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEec
Confidence 57887774334445678888999999999998865
No 8
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=87.31 E-value=1.3 Score=39.17 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=29.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
...+|||+++..-.=....+-+....|.++|++|.+++
T Consensus 18 ~~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~ 55 (412)
T 3otg_A 18 GRHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFAT 55 (412)
T ss_dssp CCSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred cceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEc
Confidence 55679999986654455667777888889999988776
No 9
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=85.43 E-value=3.6 Score=35.46 Aligned_cols=84 Identities=8% Similarity=0.026 Sum_probs=48.0
Q ss_pred CcEEEEecCchhhhcchHH-----HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC
Q 025219 40 KNVLLVIAHPDDESMFFSP-----TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ 114 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Gg-----tl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~ 114 (256)
+|||+++.+.-. .|.++ ....|.+.|++|++++...+... . -|+ +++.+..+...
T Consensus 1 MkIl~i~~~~~~--~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~--~-------------~~~---~v~~~~~~~~~ 60 (374)
T 2iw1_A 1 MIVAFCLYKYFP--FGGLQRDFMRIASTVAARGHHVRVYTQSWEGDC--P-------------KAF---ELIQVPVKSHT 60 (374)
T ss_dssp -CEEEECSEECT--TCHHHHHHHHHHHHHHHTTCCEEEEESEECSCC--C-------------TTC---EEEECCCCCSS
T ss_pred CeEEEEEeecCC--CcchhhHHHHHHHHHHhCCCeEEEEecCCCCCC--C-------------CCc---EEEEEccCccc
Confidence 468888876221 22222 23455678999999887643211 1 155 45555443221
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEecCC
Q 025219 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (256)
Q Consensus 115 dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (256)
...........+.+++++.+||+|++++.
T Consensus 61 ----~~~~~~~~~~~l~~~i~~~~~Dvv~~~~~ 89 (374)
T 2iw1_A 61 ----NHGRNAEYYAWVQNHLKEHPADRVVGFNK 89 (374)
T ss_dssp ----HHHHHHHHHHHHHHHHHHSCCSEEEESSC
T ss_pred ----chhhHHHHHHHHHHHHhccCCCEEEEecC
Confidence 00011234567888899999999998864
No 10
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=85.13 E-value=4.2 Score=35.12 Aligned_cols=86 Identities=7% Similarity=0.091 Sum_probs=45.6
Q ss_pred CcEEEEecCchhhhcchHHHHH-------HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025219 40 KNVLLVIAHPDDESMFFSPTIN-------YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~-------~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (256)
+|||+++. +.||... .|.++|++|.+++..++. . . ......|+ ++..+..+.
T Consensus 7 mkIl~~~~-------~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~-----~---~---~~~~~~g~---~~~~~~~~~ 65 (364)
T 1f0k_A 7 KRLMVMAG-------GTGGHVFPGLAVAHHLMAQGWQVRWLGTADRM-----E---A---DLVPKHGI---EIDFIRISG 65 (364)
T ss_dssp CEEEEECC-------SSHHHHHHHHHHHHHHHTTTCEEEEEECTTST-----H---H---HHGGGGTC---EEEECCCCC
T ss_pred cEEEEEeC-------CCccchhHHHHHHHHHHHcCCEEEEEecCCcc-----h---h---hhccccCC---ceEEecCCc
Confidence 68998872 2344433 345689999887654321 1 0 11222466 344444432
Q ss_pred CCC-Ccc----ccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 113 FQD-GFD----KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 113 ~~d-g~~----~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
... +.. ..+..-.....+.+++++.+||+|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvv~~~~ 104 (364)
T 1f0k_A 66 LRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGMG 104 (364)
T ss_dssp CTTCCHHHHHTCHHHHHHHHHHHHHHHHHHCCSEEEECS
T ss_pred cCcCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 211 000 0000112345678888999999999983
No 11
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=84.71 E-value=3.5 Score=35.87 Aligned_cols=91 Identities=13% Similarity=0.194 Sum_probs=50.2
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCC-cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRH-NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~-~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (256)
+|||+++..+ -|.+.+.+.+..+.++|. ++.+++.+.. .+ .. ++ ..+..|+... ..++.... +.
T Consensus 1 mkIl~v~~~~-~~~~~~~~l~~~L~~~g~~~~~v~~~~~~--~~---~~-~~---~~~~~~~~~~--~~~~~~~~--~~- 65 (384)
T 1vgv_A 1 MKVLTVFGTR-PEAIKMAPLVHALAKDPFFEAKVCVTAQH--RE---ML-DQ---VLKLFSIVPD--YDLNIMQP--GQ- 65 (384)
T ss_dssp CEEEEEECSH-HHHHHHHHHHHHHHHSTTCEEEEEECCSS--GG---GG-HH---HHHHHTCCCS--EECCCCST--TS-
T ss_pred CeEEEEeccc-HHHHHHHHHHHHHHhCCCCceEEEEcCCC--HH---HH-HH---HHHHcCCCCC--cceecCCC--Cc-
Confidence 4788887764 334556788888999985 7776654222 11 11 11 2223566210 22332211 10
Q ss_pred ccCC-hHHHHHHHHHHHHhcCCCEEEec
Q 025219 119 KLWN-HKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 119 ~~~~-~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
..+. .......+.+++++.+||+|+++
T Consensus 66 ~~~~~~~~~~~~l~~~l~~~~pDvv~~~ 93 (384)
T 1vgv_A 66 GLTEITCRILEGLKPILAEFKPDVVLVH 93 (384)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 0101 12335678889999999999998
No 12
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=83.82 E-value=5.9 Score=34.94 Aligned_cols=39 Identities=15% Similarity=0.086 Sum_probs=27.7
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~l 75 (256)
...+|||+++.----....|-++...|.++|++|.+++-
T Consensus 18 ~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 18 GRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp -CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred hhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 445789988632222345677888899999999988764
No 13
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=83.54 E-value=6.4 Score=34.81 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=55.6
Q ss_pred CcEEEEecCchhhhcchHH-HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025219 40 KNVLLVIAHPDDESMFFSP-TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Gg-tl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (256)
+++|+++-|.|...--..- +|....+-+.+|+++++-.+ . .+.+++++..+|+ ++++..+.+.+.
T Consensus 2 m~~lv~~e~~~g~l~~~~~eal~aA~~La~~V~av~~G~~-~-------~~~~~~a~~a~Ga--Dkv~~v~d~~l~---- 67 (315)
T 1efv_A 2 QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTK-C-------DKVAQDLCKVAGI--AKVLVAQHDVYK---- 67 (315)
T ss_dssp CEEEEECCEETTEECTHHHHHHHHHHTTTSEEEEEEEESC-C-------HHHHHHHHHSTTC--CEEEEEECGGGT----
T ss_pred ceEEEEEEccCCCcCHHHHHHHHHHHHhcCcEEEEEECCc-h-------HHHHHHHHHhcCC--CEEEEecCchhc----
Confidence 3478888886543211111 12222232337777766543 0 1223344467899 678888765432
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..+.+...+.|.+++++.+||+|++..
T Consensus 68 -~~~~~~~a~~La~li~~~~pdlVL~g~ 94 (315)
T 1efv_A 68 -GLLPEELTPLILATQKQFNYTHICAGA 94 (315)
T ss_dssp -TCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 235677888999999999999999983
No 14
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=83.12 E-value=5.5 Score=35.09 Aligned_cols=38 Identities=16% Similarity=0.247 Sum_probs=27.0
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
...+|||+++.--.-....+-+....|.++|++|.+++
T Consensus 13 ~~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~ 50 (398)
T 4fzr_A 13 GSHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAA 50 (398)
T ss_dssp --CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CCceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEc
Confidence 45678998853323334677888889999999998876
No 15
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=82.01 E-value=5.1 Score=34.98 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=24.5
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
++||+++.---=....|-+....|.++|++|.+++
T Consensus 5 ~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~ 39 (402)
T 3ia7_A 5 RHILFANVQGHGHVYPSLGLVSELARRGHRITYVT 39 (402)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEc
Confidence 37777654322345667777788889999998776
No 16
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=81.74 E-value=12 Score=32.26 Aligned_cols=89 Identities=9% Similarity=0.045 Sum_probs=49.7
Q ss_pred CCcEEEEecCchhhhcchHHH-HHHHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPT-INYLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggt-l~~l~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
.+|||+|+...-.. .|...+ +..+++ +|++|.+++.+.+. ....+. -...|+ .+...+...
T Consensus 4 ~mkIl~v~~~~~p~-~gG~~~~~~~l~~~L~g~~v~v~~~~~~~------~~~~~~---~~~~~~-----~~~~~~~~~- 67 (394)
T 3okp_A 4 SRKTLVVTNDFPPR-IGGIQSYLRDFIATQDPESIVVFASTQNA------EEAHAY---DKTLDY-----EVIRWPRSV- 67 (394)
T ss_dssp CCCEEEEESCCTTS-CSHHHHHHHHHHTTSCGGGEEEEEECSSH------HHHHHH---HTTCSS-----EEEEESSSS-
T ss_pred CceEEEEeCccCCc-cchHHHHHHHHHHHhcCCeEEEEECCCCc------cchhhh---ccccce-----EEEEccccc-
Confidence 57899999743222 222222 333333 59999998887652 111111 123444 333333211
Q ss_pred CccccCChHHHHHHHHHHHHhcCCCEEEecCC
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNCSIDLIITFDN 147 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (256)
.+........+.+++++.+||+|+++++
T Consensus 68 ----~~~~~~~~~~l~~~~~~~~~Dvv~~~~~ 95 (394)
T 3okp_A 68 ----MLPTPTTAHAMAEIIREREIDNVWFGAA 95 (394)
T ss_dssp ----CCSCHHHHHHHHHHHHHTTCSEEEESSC
T ss_pred ----cccchhhHHHHHHHHHhcCCCEEEECCc
Confidence 1123356678889999999999998753
No 17
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=81.24 E-value=5.9 Score=34.40 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=47.7
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (256)
+|||+++.++. +..+....+..+.+. |+++.+++ | |... . ...+..+.+|+... ..++... .+..
T Consensus 6 mkIl~v~~~~~-~~~~~~~l~~~L~~~~g~~v~~~~-~-~~~~---~----~~~~~~~~~~~~~~--~~~~~~~--~~~~ 71 (376)
T 1v4v_A 6 KRVVLAFGTRP-EATKMAPVYLALRGIPGLKPLVLL-T-GQHR---E----QLRQALSLFGIQED--RNLDVMQ--ERQA 71 (376)
T ss_dssp EEEEEEECSHH-HHHHHHHHHHHHHTSTTEEEEEEE-C-SSCH---H----HHHHHHHTTTCCCS--EECCCCS--SCCC
T ss_pred eEEEEEEeccH-HHHHHHHHHHHHHhCCCCceEEEE-c-CCcH---H----HHHHHHHHcCCCcc--cccccCC--CCcc
Confidence 68999886643 234455666667766 67766554 3 3211 1 11122334676210 1222211 1110
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
...........+.+++++.+||+|+++
T Consensus 72 ~~~~~~~~~~~l~~~l~~~~pDvv~~~ 98 (376)
T 1v4v_A 72 LPDLAARILPQAARALKEMGADYVLVH 98 (376)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 000011334568888999999999998
No 18
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=80.54 E-value=5.6 Score=35.16 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=26.8
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEE
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
..++||+++.---=...-|-+....|.++|++|.+++
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~ 55 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVT 55 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEe
Confidence 3467888765333345677788888999999988776
No 19
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=80.47 E-value=7.1 Score=33.32 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=49.8
Q ss_pred Cchhhh-cchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCCh
Q 025219 48 HPDDES-MFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNH 123 (256)
Q Consensus 48 HPDDE~-l~~Ggtl~~l~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~ 123 (256)
.|.|+. +.. -.++.++|. +|+++++-.. ..+|..+.+-.+|+ ++.+.++ .+.+..+ .+.
T Consensus 36 np~d~~Ale~---A~~Lke~g~~~~V~av~~G~~--------~a~~~lr~ala~Ga--D~vi~v~~d~~~~~~----~~~ 98 (252)
T 1efp_B 36 NPFDEIAVEE---AIRLKEKGQAEEIIAVSIGVK--------QAAETLRTALAMGA--DRAILVVAADDVQQD----IEP 98 (252)
T ss_dssp CHHHHHHHHH---HHHHHTTTSCSEEEEEEEESG--------GGHHHHHHHHHHTC--SEEEEEECCSSTTCC----CCH
T ss_pred CHHHHHHHHH---HHHHHhcCCCceEEEEEeCCh--------hHHHHHHHHHhcCC--CEEEEEecChhhccc----CCH
Confidence 466654 322 234555566 7777766432 12333333344599 6788887 5543111 245
Q ss_pred HHHHHHHHHHHHhcCCCEEEecC
Q 025219 124 KSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
......|.+++++.+||+|++..
T Consensus 99 ~~~a~~La~~i~~~~~dlVl~G~ 121 (252)
T 1efp_B 99 LAVAKILAAVARAEGTELIIAGK 121 (252)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEcC
Confidence 67788899999988999999974
No 20
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=79.42 E-value=5.1 Score=34.51 Aligned_cols=82 Identities=12% Similarity=0.075 Sum_probs=49.5
Q ss_pred cCchhhh-cchHHHHHHHHhC-CC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCC
Q 025219 47 AHPDDES-MFFSPTINYLTSR-RH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWN 122 (256)
Q Consensus 47 aHPDDE~-l~~Ggtl~~l~~~-G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~ 122 (256)
-.|.|+. +..+ .+++++ |. +|+++++ |.. ..+|..+.+-.+|+ ++++.++.+.+. ..+
T Consensus 35 lnp~d~~ale~A---~~Lke~~g~~~~V~av~~--G~~------~~~~~lr~ala~Ga--D~vi~v~d~~~~-----~~~ 96 (264)
T 1o97_C 35 LNEWDDFSLEEA---MKIKESSDTDVEVVVVSV--GPD------RVDESLRKCLAKGA--DRAVRVWDDAAE-----GSD 96 (264)
T ss_dssp ECHHHHHHHHHH---HHHHHHCSSCCEEEEEEE--SCG------GGHHHHHHHHHTTC--SEEEEECCGGGT-----TCC
T ss_pred cCHHHHHHHHHH---HHHHHhcCCCceEEEEEe--Cch------hHHHHHHHHHhcCC--CEEEEEcCcccc-----cCC
Confidence 3466654 3322 234432 54 6766665 421 12333333344699 778888755432 135
Q ss_pred hHHHHHHHHHHHHhcCCCEEEecC
Q 025219 123 HKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
.......|.+++++.+||+|++..
T Consensus 97 ~~~~a~~La~~i~~~~~dlVl~G~ 120 (264)
T 1o97_C 97 AIVVGRILTEVIKKEAPDMVFAGV 120 (264)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcC
Confidence 667788899999999999999974
No 21
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=78.25 E-value=17 Score=30.42 Aligned_cols=95 Identities=7% Similarity=0.111 Sum_probs=51.2
Q ss_pred ccccccCCCCCcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEE
Q 025219 30 NAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKV 107 (256)
Q Consensus 30 ~~~~~~~~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~ 107 (256)
+++.......+|+++++.--++ ++-..|..+.+. +++|..| +|+-.. . ...+.|+..|+| +..
T Consensus 13 ~~~~~~~~~~~rI~~l~SG~g~---~~~~~l~~l~~~~~~~~I~~V-vt~~~~-~-------~~~~~A~~~gIp---~~~ 77 (229)
T 3auf_A 13 GENLYFQGHMIRIGVLISGSGT---NLQAILDGCREGRIPGRVAVV-ISDRAD-A-------YGLERARRAGVD---ALH 77 (229)
T ss_dssp SBSSSCBTTCEEEEEEESSCCH---HHHHHHHHHHTTSSSEEEEEE-EESSTT-C-------HHHHHHHHTTCE---EEE
T ss_pred cccccccCCCcEEEEEEeCCcH---HHHHHHHHHHhCCCCCeEEEE-EcCCCc-h-------HHHHHHHHcCCC---EEE
Confidence 4443333445688887543332 234555565554 4555444 455321 1 124567789993 344
Q ss_pred ccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 108 LDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 108 l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
++..++. +.++--+.+.+.+++.+||+|++..
T Consensus 78 ~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~ag 109 (229)
T 3auf_A 78 MDPAAYP-------SRTAFDAALAERLQAYGVDLVCLAG 109 (229)
T ss_dssp CCGGGSS-------SHHHHHHHHHHHHHHTTCSEEEESS
T ss_pred ECccccc-------chhhccHHHHHHHHhcCCCEEEEcC
Confidence 4432221 2233334567788899999999874
No 22
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=77.31 E-value=6.6 Score=33.62 Aligned_cols=82 Identities=10% Similarity=0.056 Sum_probs=49.4
Q ss_pred Cchhhh-cchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCCh
Q 025219 48 HPDDES-MFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNH 123 (256)
Q Consensus 48 HPDDE~-l~~Ggtl~~l~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~ 123 (256)
.|.|+. +..+ .++.++|. +|+++++-... .+|..+.+-.+|+ ++.+.++ .+.+. ...+.
T Consensus 39 np~d~~Ale~A---~~Lke~g~~~~V~av~~G~~~--------a~~~lr~ala~Ga--D~vi~v~~d~~~~----~~~~~ 101 (255)
T 1efv_B 39 NPFCEIAVEEA---VRLKEKKLVKEVIAVSCGPAQ--------CQETIRTALAMGA--DRGIHVEVPPAEA----ERLGP 101 (255)
T ss_dssp CHHHHHHHHHH---HHHHHTTSCSEEEEEEEESTT--------HHHHHHHHHHHTC--SEEEEEECCHHHH----TTCCH
T ss_pred CHHHHHHHHHH---HHHHhcCCCceEEEEEeCChh--------HHHHHHHHHhcCC--CEEEEEecChhhc----ccCCH
Confidence 466654 3222 34555566 77777664321 2333333344699 6787776 44320 11245
Q ss_pred HHHHHHHHHHHHhcCCCEEEecC
Q 025219 124 KSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
......|.+++++.+||+|++..
T Consensus 102 ~~~A~~La~~i~~~~~dlVl~G~ 124 (255)
T 1efv_B 102 LQVARVLAKLAEKEKVDLVLLGK 124 (255)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEeC
Confidence 67788889999988999999974
No 23
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=77.27 E-value=1.8 Score=37.73 Aligned_cols=39 Identities=23% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-----HHHhCCCcEEEEEEeC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTIN-----YLTSRRHNLHILCMSN 77 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~-----~l~~~G~~V~vv~lT~ 77 (256)
-..++||+|.|||+.+. +...|+ .+.++|++|.++-|-.
T Consensus 20 m~~MKiLII~aHP~~~S--~n~aL~~~~~~~l~~~G~eV~v~DLy~ 63 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEPRS--LNGALKNFAIRHLQQAGHEVQVSDLYA 63 (280)
T ss_dssp --CCEEEEEECCSCTTS--HHHHHHHHHHHHHHHTTCEEEEEETTT
T ss_pred hhCCeEEEEEeCCCCcc--HHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 35679999999999775 344443 4457899999987743
No 24
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=74.03 E-value=2.8 Score=37.14 Aligned_cols=38 Identities=8% Similarity=-0.094 Sum_probs=25.0
Q ss_pred CCCcEEEEecCchhhhcchHH-----HHHHHHhCCCcEEEEEEeCC
Q 025219 38 DKKNVLLVIAHPDDESMFFSP-----TINYLTSRRHNLHILCMSNG 78 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Gg-----tl~~l~~~G~~V~vv~lT~G 78 (256)
.++|||++++.+. .|... ....+.+.|++|.+++.+.+
T Consensus 39 ~~mkIl~v~~~~~---~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~ 81 (416)
T 2x6q_A 39 KGRSFVHVNSTSF---GGGVAEILHSLVPLLRSIGIEARWFVIEGP 81 (416)
T ss_dssp TTCEEEEEESCSS---SSTHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred hccEEEEEeCCCC---CCCHHHHHHHHHHHHHhCCCeEEEEEccCC
Confidence 4579999998851 22111 23345678999998887654
No 25
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=70.67 E-value=8.1 Score=34.20 Aligned_cols=85 Identities=9% Similarity=0.154 Sum_probs=53.3
Q ss_pred EEEEecCchh-------hhcchHHHHHHHHhCC-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 025219 42 VLLVIAHPDD-------ESMFFSPTINYLTSRR-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (256)
Q Consensus 42 vLvv~aHPDD-------E~l~~Ggtl~~l~~~G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~ 113 (256)
+|+++-|.|. |.+..+- ++.+.| .+|+++++-.+ . . .+++++..+|+ ++++..+.+.+
T Consensus 3 ilv~~e~~~g~l~~~~~eal~~A~---~L~e~g~~~V~av~~G~~-----~---~-~~~~~a~a~Ga--Dkv~~v~d~~l 68 (320)
T 1o97_D 3 ILVIAEHRRNDLRPVSLELIGAAN---GLKKSGEDKVVVAVIGSQ-----A---D-AFVPALSVNGV--DELVVVKGSSI 68 (320)
T ss_dssp EEEECCEETTEECTHHHHHHHHHH---HHCSSTTCEEEEEEESTT-----G---G-GGHHHHCBTTC--SEEEEEECSCS
T ss_pred EEEEEeCcCCCcCHHHHHHHHHHH---HHhhCCCCcEEEEEECCc-----H---H-HHHHHHHhcCC--ceEEEEeCccc
Confidence 5777777554 3333222 232225 47777766432 1 1 22334556799 77888886553
Q ss_pred CCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 114 QDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 114 ~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+ .+.+...+.|.+++++.+||+|++..
T Consensus 69 --~----~~~~~~a~~La~~i~~~~pdlVL~g~ 95 (320)
T 1o97_D 69 --D----FDPDVFEASVSALIAAHNPSVVLLPH 95 (320)
T ss_dssp --S----CCHHHHHHHHHHHHHHHCCSEEEEEC
T ss_pred --C----CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 1 25677888899999999999999983
No 26
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=70.65 E-value=23 Score=31.30 Aligned_cols=34 Identities=12% Similarity=0.050 Sum_probs=22.7
Q ss_pred CcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEE
Q 025219 40 KNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 40 ~~vLvv~aHPD-DE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
++||+++ .|- =....+-.....|.++|++|++++
T Consensus 8 ~kIl~~~-~~~~Gh~~p~~~la~~L~~~G~~V~~~~ 42 (430)
T 2iyf_A 8 AHIAMFS-IAAHGHVNPSLEVIRELVARGHRVTYAI 42 (430)
T ss_dssp CEEEEEC-CSCHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEe-CCCCccccchHHHHHHHHHCCCeEEEEe
Confidence 4788764 433 223455667777888999998765
No 27
>3fet_A Electron transfer flavoprotein subunit alpha RELA protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum}
Probab=70.32 E-value=28 Score=27.55 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=45.3
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (256)
.+++|+++-|++ .+ --.+ ...+.+.+|+++++-.++. +.+|+ ++++..+ ++ .
T Consensus 3 ~M~vlV~~E~~~-~~---~Ell-~~ar~~g~v~av~~G~~~~---------------~~~Ga--d~v~~v~-~~---~-- 54 (166)
T 3fet_A 3 AMKFLTVSDDMN-FL---RQVN-TLVAGKGDMDSVIIGEGDA---------------KGLGS--KVLYRAK-KG---T-- 54 (166)
T ss_dssp SEEEEEEESSHH-HH---HHHH-HHHGGGEEEEEEEESCCCC---------------TTCCC--SEEEEEC-TT---C--
T ss_pred ccEEEEEEcCcc-HH---HHHH-HhhccCCcEEEEEECcchH---------------HHcCC--CEEEEeC-CC---C--
Confidence 478999999854 21 1112 2223334777777743311 11398 7788877 32 1
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 119 KLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
..+...+.|.++++ +||+|++.
T Consensus 55 ---~~e~~a~~l~~~~~--~p~~Vl~g 76 (166)
T 3fet_A 55 ---PFDAVSEGILKIAG--NYDYIAIG 76 (166)
T ss_dssp ---CHHHHHHHHHHHHT--TCSEEEEE
T ss_pred ---ChHHHHHHHHHHHc--CCCEEEEc
Confidence 23566777888887 99999987
No 28
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=68.90 E-value=23 Score=31.81 Aligned_cols=92 Identities=13% Similarity=0.234 Sum_probs=50.2
Q ss_pred cE-EEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 025219 41 NV-LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (256)
Q Consensus 41 ~v-Lvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~ 119 (256)
+| ++++.-|+|.-+ .+.+..+.+.+..+.+.++-.|.. + ....+..+.+|+.+ ++ .++.-....+...
T Consensus 29 kI~~v~Gtr~~~~~~--a~li~~l~~~~~~~~~~~~~tG~h------~-~m~~~~~~~~~i~~-~~-~l~v~~~~~~~~~ 97 (403)
T 3ot5_A 29 KVMSIFGTRPEAIKM--APLVLALEKEPETFESTVVITAQH------R-EMLDQVLEIFDIKP-DI-DLDIMKKGQTLAE 97 (403)
T ss_dssp EEEEEECSHHHHHHH--HHHHHHHHTCTTTEEEEEEECC------------CHHHHHHTTCCC-SE-ECCCCC-CCCHHH
T ss_pred eEEEEEecChhHHHH--HHHHHHHHhCCCCCcEEEEEecCc------H-HHHHHHHHhcCCCC-Cc-ccccCCCCCCHHH
Confidence 55 455667777653 889999987641233333334421 1 12333456789843 22 2433111111110
Q ss_pred cCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 120 LWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
........+.+++++.+||+|+++
T Consensus 98 --~~~~~~~~l~~~l~~~kPD~Vi~~ 121 (403)
T 3ot5_A 98 --ITSRVMNGINEVIAAENPDIVLVH 121 (403)
T ss_dssp --HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred --HHHHHHHHHHHHHHHcCCCEEEEE
Confidence 123566778999999999999998
No 29
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=68.54 E-value=14 Score=31.81 Aligned_cols=93 Identities=10% Similarity=0.142 Sum_probs=45.5
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhC-C-CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSR-R-HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~-G-~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
.++||+++.... +..+....+..+.+. | +++.+++ | |... . ..++ ..+..|++.. ..+.... .+
T Consensus 8 ~mkIl~v~~~~~-~~~~~~~l~~~L~~~~~~~~v~~~~-~-~~~~---~-~~~~---~~~~~~~~~~--~~~~~~~--~~ 73 (375)
T 3beo_A 8 RLKVMTIFGTRP-EAIKMAPLVLELQKHPEKIESIVTV-T-AQHR---Q-MLDQ---VLSIFGITPD--FDLNIMK--DR 73 (375)
T ss_dssp CEEEEEEECSHH-HHHHHHHHHHHHTTCTTTEEEEEEE-C-CSSS---H-HHHH---HHHHHTCCCS--EECCCCC--TT
T ss_pred CceEEEEecCcH-HHHHHHHHHHHHHhCCCCCCeEEEE-c-CCCH---H-HHHH---HHHHcCCCCc--cccccCC--Cc
Confidence 468999875533 333455566667665 3 4444333 3 3221 1 1111 2233676321 1122110 01
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
....+........+.+++++.+||+|+++
T Consensus 74 ~~~~~~~~~~~~~l~~~l~~~~pDvv~~~ 102 (375)
T 3beo_A 74 QTLIDITTRGLEGLDKVMKEAKPDIVLVH 102 (375)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 11001112345568888999999999997
No 30
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=68.26 E-value=45 Score=27.37 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=46.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (256)
+|+.++...-.+ ++-..|..+.+. +++|..| +|+-... ...+.|+..|+| +..++..++.
T Consensus 4 ~ki~vl~sG~g~---~~~~~l~~l~~~~l~~~I~~V-it~~~~~--------~v~~~A~~~gIp---~~~~~~~~~~--- 65 (212)
T 3av3_A 4 KRLAVFASGSGT---NFQAIVDAAKRGDLPARVALL-VCDRPGA--------KVIERAARENVP---AFVFSPKDYP--- 65 (212)
T ss_dssp EEEEEECCSSCH---HHHHHHHHHHTTCCCEEEEEE-EESSTTC--------HHHHHHHHTTCC---EEECCGGGSS---
T ss_pred cEEEEEEECCcH---HHHHHHHHHHhCCCCCeEEEE-EeCCCCc--------HHHHHHHHcCCC---EEEeCccccc---
Confidence 466665544333 234555555555 4566444 4653211 234567788994 3444432221
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.++--+.+.+.+++++||+|++..
T Consensus 66 ----~~~~~~~~~~~~l~~~~~Dliv~a~ 90 (212)
T 3av3_A 66 ----SKAAFESEILRELKGRQIDWIALAG 90 (212)
T ss_dssp ----SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ----chhhhHHHHHHHHHhcCCCEEEEch
Confidence 2233344567788899999999873
No 31
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=67.85 E-value=15 Score=31.27 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=14.2
Q ss_pred HHHHHHHhcCCCEEEecCC
Q 025219 129 IVEEEVVNCSIDLIITFDN 147 (256)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~d~ 147 (256)
.+.+++++.+||+|+++.+
T Consensus 75 ~l~~~l~~~~~Dvi~~~~~ 93 (342)
T 2iuy_A 75 EIERWLRTADVDVVHDHSG 93 (342)
T ss_dssp HHHHHHHHCCCSEEEECSS
T ss_pred HHHHHHHhcCCCEEEECCc
Confidence 5667777788888888753
No 32
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=66.74 E-value=18 Score=29.83 Aligned_cols=98 Identities=20% Similarity=0.179 Sum_probs=56.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (256)
.|.+.|++ .+++++..........|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++. +||
T Consensus 125 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 194 (292)
T 3k4h_A 125 YLISLGHK-QIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILH---------FDFSRESGQQAVEELMGLQQPPT 194 (292)
T ss_dssp HHHHTTCC-CEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEE---------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCc-eEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEe---------cCCCHHHHHHHHHHHHcCCCCCc
Confidence 45567876 344444332223356788888999999888432111111 1234566677788888764 689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
.||+.+ |.. +..+.++++..+ ++++.+.-
T Consensus 195 ai~~~~--------d~~--a~g~~~al~~~g~~vP~di~vig 226 (292)
T 3k4h_A 195 AIMATD--------DLI--GLGVLSALSKKGFVVPKDVSIVS 226 (292)
T ss_dssp EEEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEEcC--------hHH--HHHHHHHHHHhCCCCCCeEEEEE
Confidence 998862 333 334556665543 24555543
No 33
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=66.46 E-value=37 Score=27.62 Aligned_cols=98 Identities=6% Similarity=-0.031 Sum_probs=53.5
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++. +||
T Consensus 114 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 183 (275)
T 3d8u_A 114 HLIEQGFK-NVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTH---------EAPSSQLGAEGLAKLLLRDSSLN 183 (275)
T ss_dssp HHHTTTCC-CEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECS---------SCCCHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHCCCC-eEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEe---------CCCChhHHHHHHHHHHhCCCCCC
Confidence 45567765 233443322222346688888899999887533222211 1134555566677777653 589
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 184 ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg 215 (275)
T 3d8u_A 184 ALVCSH--------EE--IAIGALFECHRRVLKVPTDIAIIC 215 (275)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEEcC--------cH--HHHHHHHHHHHcCCCCCCceEEEe
Confidence 998862 22 3444555655433 24555543
No 34
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=66.14 E-value=10 Score=30.43 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=37.9
Q ss_pred cEEEEEEeCCC-------C-CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCC
Q 025219 69 NLHILCMSNGN-------A-DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSI 139 (256)
Q Consensus 69 ~V~vv~lT~G~-------~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P 139 (256)
.+.+.++|.|+ . +...+.=..-+.+.++.+|+ ++.... .|| +.+.+.+.|.+.+.+...
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~---~v~~~~iv~D---------d~~~I~~al~~a~~~~~~ 82 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGH---KIIGYSLVPD---------DKIKILKAFTDALSIDEV 82 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHTCTTC
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhcCCC
Confidence 34555666664 2 22222222335566777898 333222 233 346778888888775458
Q ss_pred CEEEec
Q 025219 140 DLIITF 145 (256)
Q Consensus 140 d~V~t~ 145 (256)
|+|+|.
T Consensus 83 DlVitt 88 (178)
T 2pjk_A 83 DVIIST 88 (178)
T ss_dssp CEEEEE
T ss_pred CEEEEC
Confidence 999998
No 35
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=65.61 E-value=22 Score=28.95 Aligned_cols=97 Identities=11% Similarity=0.126 Sum_probs=56.2
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC--
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS-- 138 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~-- 138 (256)
..|.+.|++= +.+++..........|.+-.+++++..|++ ...... ..|+.+...+.+.+++++..
T Consensus 113 ~~L~~~G~~~-i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~ 180 (272)
T 3o74_A 113 ASLLSSAPRS-IALIGARPELSVSQARAGGFDEALQGYTGE---VRRYQG--------EAFSRECGQRLMQQLIDDLGGL 180 (272)
T ss_dssp HHHHTTCCSE-EEEEEECTTSHHHHHHHHHHHHHTTTCCSE---EEEEEE--------SSSSHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCcE-EEEEecCCCCccHHHHHHHHHHHHHHcCCC---hheeec--------CCCCHHHHHHHHHHHHhcCCCC
Confidence 3556678753 333332222224567888888898888873 222111 12455666777888888765
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC--CCceeEEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS--ERNIEAWE 179 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~--~~~~~~~e 179 (256)
||.|++.+ | ..+..+.++++..+ ++++.+.-
T Consensus 181 ~~ai~~~~--------d--~~a~g~~~al~~~g~vp~di~vvg 213 (272)
T 3o74_A 181 PDALVTTS--------Y--VLLQGVFDTLQARPVDSRQLQLGT 213 (272)
T ss_dssp CSEEEESS--------H--HHHHHHHHHHHTSCGGGCCCEEEE
T ss_pred CcEEEEeC--------c--hHHHHHHHHHHHcCCCccceEEEE
Confidence 99999872 2 23445666665543 34555543
No 36
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=65.02 E-value=18 Score=31.79 Aligned_cols=17 Identities=0% Similarity=-0.119 Sum_probs=14.5
Q ss_pred HHHHHHHhcCCCEEEec
Q 025219 129 IVEEEVVNCSIDLIITF 145 (256)
Q Consensus 129 ~l~~~i~~~~Pd~V~t~ 145 (256)
...+++++++||+|+++
T Consensus 83 ~~~~~l~~~~PDvVi~~ 99 (365)
T 3s2u_A 83 QALRVIRQLRPVCVLGL 99 (365)
T ss_dssp HHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHhcCCCEEEEc
Confidence 45678999999999987
No 37
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=65.01 E-value=59 Score=27.88 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~ 138 (256)
..|.+.|++= +.+++....... ...|.+-.+++++..|++.......... .|+.+...+.+.+++++ -+
T Consensus 180 ~~L~~~G~r~-I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~ 250 (355)
T 3e3m_A 180 NALLARGFRK-IVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAP--------PLSIEDGVAAAELILQEYPD 250 (355)
T ss_dssp HHHHHTTCCS-EEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCS--------SCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHCCCCe-EEEEccCcccChhHHHHHHHHHHHHHHCCcCCCccEEEecC--------CCCHHHHHHHHHHHHcCCCC
Confidence 3566778752 233332222222 5678888999999999864322222211 13445556667777776 46
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
||.||+.+ |.. +..+..+++..+ ++++.+.
T Consensus 251 ~~ai~~~n--------D~~--A~g~~~al~~~G~~vP~disvi 283 (355)
T 3e3m_A 251 TDCIFCVS--------DMP--AFGLLSRLKSIGVAVPEQVSVV 283 (355)
T ss_dssp CCEEEESS--------HHH--HHHHHHHHHHHTCCTTTTCEEE
T ss_pred CcEEEECC--------hHH--HHHHHHHHHHcCCCCCCceEEE
Confidence 89999862 333 334555655433 2455554
No 38
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=64.52 E-value=11 Score=31.23 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=27.9
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.|+..|+| +..++..++. +.++.-+.+.+.+++++||+|++..
T Consensus 44 ~~A~~~gIp---~~~~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~a~ 87 (209)
T 1meo_A 44 DKAERAGIP---TRVINHKLYK-------NRVEFDSAIDLVLEEFSIDIVCLAG 87 (209)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHcCCC---EEEECccccC-------chhhhhHHHHHHHHhcCCCEEEEcc
Confidence 567788994 4444433321 2233334577788899999998874
No 39
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=63.02 E-value=24 Score=30.02 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=53.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd 140 (256)
..|.+.|++ .+.+++..........|.+-.+++++..|++........ ..|+.+...+.+.+++++ +||
T Consensus 173 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~-~~~ 241 (332)
T 2o20_A 173 KKLIDSGNK-KIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFE---------GNYSYEQGKALAERLLER-GAT 241 (332)
T ss_dssp HHHHHTTCS-SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC---------SCCSHHHHHHHHHHHHHT-TCC
T ss_pred HHHHHCCCC-eEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEe---------CCCCHHHHHHHHHHHhcc-CCC
Confidence 355677875 233443322222356788888899999887432110110 113445555667777777 999
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
.||+.+ |. .+..+.++++..+ ++++.+.
T Consensus 242 ai~~~~--------d~--~A~g~~~al~~~G~~vP~disvi 272 (332)
T 2o20_A 242 SAVVSH--------DT--VAVGLLSAMMDKGVKVPEDFEII 272 (332)
T ss_dssp EEEESC--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEEECC--------hH--HHHHHHHHHHHcCCCCccCEEEE
Confidence 999862 33 3344566665543 2455544
No 40
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=62.95 E-value=52 Score=29.22 Aligned_cols=91 Identities=13% Similarity=0.267 Sum_probs=51.4
Q ss_pred CcEEE-EecCchhhhcchHHHHHHHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219 40 KNVLL-VIAHPDDESMFFSPTINYLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (256)
Q Consensus 40 ~~vLv-v~aHPDDE~l~~Ggtl~~l~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (256)
++|++ ++.-|+|.- +.+.+..+.+. |.++. ++.|.... ....+..+.+|+.+ + +.++.-....+.
T Consensus 26 ~ki~~v~Gtr~~~~~--~a~li~~l~~~~~~~~~-~~~tG~h~--------~~~~~~~~~~~i~~-~-~~l~~~~~~~~~ 92 (396)
T 3dzc_A 26 KKVLIVFGTRPEAIK--MAPLVQQLCQDNRFVAK-VCVTGQHR--------EMLDQVLELFSITP-D-FDLNIMEPGQTL 92 (396)
T ss_dssp EEEEEEECSHHHHHH--HHHHHHHHHHCTTEEEE-EEECCSSS--------HHHHHHHHHTTCCC-S-EECCCCCTTCCH
T ss_pred CeEEEEEeccHhHHH--HHHHHHHHHhCCCCcEE-EEEecccH--------HHHHHHHHhcCCCC-c-eeeecCCCCCCH
Confidence 46654 556676654 48899999886 44432 34443321 12333446789843 2 234431111111
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
.. ........+.+++++.+||+|+++
T Consensus 93 ~~--~~~~~~~~l~~~l~~~kPDvVi~~ 118 (396)
T 3dzc_A 93 NG--VTSKILLGMQQVLSSEQPDVVLVH 118 (396)
T ss_dssp HH--HHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HH--HHHHHHHHHHHHHHhcCCCEEEEE
Confidence 11 123566778999999999999998
No 41
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=62.05 E-value=80 Score=31.13 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=34.2
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCC---cEEEEEEeCCCCCCch-----------HHHHHHHHHHHHHcCC
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRH---NLHILCMSNGNADGMG-----------NIRKDELHRACAVLKI 100 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~---~V~vv~lT~G~~~~~~-----------~~R~~E~~~A~~~LGv 100 (256)
.++-+|.|--+.+.--...+|..+.++.. +..++++.||+.++.. ..+.+++++.++..|+
T Consensus 140 P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~~~~v 214 (802)
T 4hg6_A 140 PTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCRELGV 214 (802)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHHhcCc
Confidence 35544444434332123667888876543 2678888898754321 1145556666666666
No 42
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=61.68 E-value=30 Score=27.68 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=38.0
Q ss_pred HHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecCCCCCC-CCchHHHHHHHHHHH
Q 025219 89 DELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWSY 166 (256)
Q Consensus 89 ~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~v~~av~~a 166 (256)
.-+.+.++.+|+ ++.... .+| +.+.+.+.|.+.+.+ .|+|+|. .|.+ ++-|+ +.+++.++
T Consensus 26 ~~l~~~L~~~G~---~v~~~~iv~D---------d~~~I~~~l~~a~~~--~DlVitt--GG~g~~~~D~--T~ea~a~~ 87 (172)
T 3kbq_A 26 AFIGNFLTYHGY---QVRRGFVVMD---------DLDEIGWAFRVALEV--SDLVVSS--GGLGPTFDDM--TVEGFAKC 87 (172)
T ss_dssp HHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHHH--CSEEEEE--SCCSSSTTCC--HHHHHHHH
T ss_pred HHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhc--CCEEEEc--CCCcCCcccc--hHHHHHHH
Confidence 445667778898 333222 233 346778888888775 8999998 3322 44444 45666666
Q ss_pred Hh
Q 025219 167 LN 168 (256)
Q Consensus 167 ~~ 168 (256)
+.
T Consensus 88 ~~ 89 (172)
T 3kbq_A 88 IG 89 (172)
T ss_dssp HT
T ss_pred cC
Confidence 53
No 43
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=61.67 E-value=66 Score=26.38 Aligned_cols=85 Identities=13% Similarity=0.242 Sum_probs=46.6
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCC--cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRH--NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~--~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (256)
+|+++++..-++ ++-..|..+.+.+. +| ++++|+.+.. ...+.|+..|+| +..++..++.
T Consensus 2 ~rI~vl~SG~g~---~~~~~l~~l~~~~~~~~i-~~Vvs~~~~~--------~~~~~A~~~gIp---~~~~~~~~~~--- 63 (216)
T 2ywr_A 2 LKIGVLVSGRGS---NLQAIIDAIESGKVNASI-ELVISDNPKA--------YAIERCKKHNVE---CKVIQRKEFP--- 63 (216)
T ss_dssp EEEEEEECSCCH---HHHHHHHHHHTTSSCEEE-EEEEESCTTC--------HHHHHHHHHTCC---EEECCGGGSS---
T ss_pred CEEEEEEeCCcH---HHHHHHHHHHhCCCCCeE-EEEEeCCCCh--------HHHHHHHHcCCC---EEEeCccccc---
Confidence 366666444332 23455666666665 44 3444654221 124566778994 4444432221
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.++--+.+.+.+++.+||+|++..
T Consensus 64 ----~r~~~~~~~~~~l~~~~~Dliv~a~ 88 (216)
T 2ywr_A 64 ----SKKEFEERMALELKKKGVELVVLAG 88 (216)
T ss_dssp ----SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred ----chhhhhHHHHHHHHhcCCCEEEEeC
Confidence 2233334567788899999999874
No 44
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=61.38 E-value=35 Score=27.78 Aligned_cols=98 Identities=8% Similarity=-0.024 Sum_probs=55.5
Q ss_pred HHHHhCCCcEEEEEEeCCC-C---CCchH-HHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHH
Q 025219 61 NYLTSRRHNLHILCMSNGN-A---DGMGN-IRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEV 134 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~-~---~~~~~-~R~~E~~~A~~~LGv~~~~~-~~l~~~d~~dg~~~~~~~~~l~~~l~~~i 134 (256)
..+.+.|++ .+.+++... . ..... .|.+-.+++++..|++.... .+. ..|+.+...+.+.+++
T Consensus 107 ~~L~~~G~~-~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~l 175 (276)
T 2h0a_A 107 AYLARFPGP-IFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYI----------TRHSQEGGRLALRHFL 175 (276)
T ss_dssp HHHTTSSSC-EEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEE----------ECSSHHHHHHHHHHHH
T ss_pred HHHHHcCCC-eEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeee----------cCCChHHHHHHHHHHH
Confidence 345567876 455555433 2 34567 88888999999999843211 111 1234455566677777
Q ss_pred Hhc-CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 135 VNC-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 135 ~~~-~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
++. +||.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 176 ~~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg 214 (276)
T 2h0a_A 176 EKASPPLNVFAGA--------DQ--VALGVLEEAVRLGLTPGRDVRVLG 214 (276)
T ss_dssp TTCCSSEEEECSS--------HH--HHHHHHHHHHTTSCTTTTSEEEEE
T ss_pred hCCCCCCEEEECC--------cH--HHHHHHHHHHHcCCCCCCCeEEEE
Confidence 654 588888762 22 3334555665443 24555543
No 45
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=59.96 E-value=36 Score=29.08 Aligned_cols=95 Identities=8% Similarity=0.053 Sum_probs=58.2
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++ ....+. .|+.+...+.+.+++++..||.
T Consensus 168 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~--------~~~~~~~~~~~~~ll~~~~~~a 234 (333)
T 3jvd_A 168 SVLGGSGM-NIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFG--------HYSVESGEEMAQVVFNNGLPDA 234 (333)
T ss_dssp HHCCSSSC-EEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEEC--------CSSHHHHHHHHHHHHHTCCCSE
T ss_pred HHHHCCCC-eEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecC--------CCCHHHHHHHHHHHhcCCCCcE
Confidence 55678886 3455554333334567888899999999983 222111 1345666677888888766999
Q ss_pred EEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 142 IITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 142 V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 235 i~~~n--------d~--~A~g~~~al~~~G~~vP~disvig 265 (333)
T 3jvd_A 235 LIVAS--------PR--LMAGVMRAFTRLNVRVPHDVVIGG 265 (333)
T ss_dssp EEECC--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEECC--------HH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 99872 33 3345566665543 24555543
No 46
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=59.93 E-value=35 Score=29.91 Aligned_cols=85 Identities=14% Similarity=0.230 Sum_probs=49.8
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCC-CCch-HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA-DGMG-NIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~-~~~~-~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
+.|+++++-. + +.+..|..+.++|++|. .++|+.+. .+.+ ........+.|+..|+| + +. |+ .
T Consensus 3 ~mrIvf~Gt~-~----fa~~~L~~L~~~~~~i~-~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp---v--~~-~~---~ 67 (314)
T 1fmt_A 3 SLRIIFAGTP-D----FAARHLDALLSSGHNVV-GVFTQPDRPAGRGKKLMPSPVKVLAEEKGLP---V--FQ-PV---S 67 (314)
T ss_dssp CCEEEEEECS-H----HHHHHHHHHHHTTCEEE-EEECCCCBC------CBCCHHHHHHHHTTCC---E--EC-CS---C
T ss_pred CCEEEEEecC-H----HHHHHHHHHHHCCCcEE-EEEeCCCCccccccccCcCHHHHHHHHcCCc---E--Ee-cC---C
Confidence 4688888864 2 56788889999998875 45566432 1111 11123456678889994 2 22 21 1
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+ ..+ .+.+.+++.+||++++..
T Consensus 68 ~----~~~----~~~~~l~~~~~Dliv~~~ 89 (314)
T 1fmt_A 68 L----RPQ----ENQQLVAELQADVMVVVA 89 (314)
T ss_dssp S----CSH----HHHHHHHHTTCSEEEEES
T ss_pred C----CCH----HHHHHHHhcCCCEEEEee
Confidence 1 112 245566788999998864
No 47
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=59.78 E-value=70 Score=27.23 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=55.8
Q ss_pred CcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEecC
Q 025219 68 HNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFD 146 (256)
Q Consensus 68 ~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d 146 (256)
+.-.+++++..........|.+-.+++++..|. ......-. ..|+.+...+.+.+++++. +||.|++.+
T Consensus 144 ~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~L~~~~~~~aI~~~~ 213 (350)
T 3h75_A 144 HGIELLAFSGLKVTPAAQLRERGLRRALAEHPQ--VHLRQLVY--------GEWNRERAYRQAQQLLKRYPKTQLVWSAN 213 (350)
T ss_dssp CCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTT--EEEEEEEE--------CTTCHHHHHHHHHHHHHHCTTEEEEEESS
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC--eEEEEEee--------CCCcHHHHHHHHHHHHHhCCCcCEEEECC
Confidence 535666665443333466788889999999886 22222111 1256677777888888775 478888862
Q ss_pred CCCCCCCchHHHHHHHHHHHHhhcCC---CceeEEEe
Q 025219 147 NYGVSGHCNHRDVHHGIWSYLNGTSE---RNIEAWEL 180 (256)
Q Consensus 147 ~~g~d~H~DH~~v~~av~~a~~~~~~---~~~~~~e~ 180 (256)
| ..+..+.+|++..+. +++.+.-.
T Consensus 214 --------d--~~a~g~~~al~~~G~~vP~di~vvg~ 240 (350)
T 3h75_A 214 --------D--EMALGAMQAARELGRKPGTDLLFSGV 240 (350)
T ss_dssp --------H--HHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred --------h--HHHHHHHHHHHHcCCCCCCCeEEEec
Confidence 2 234456666655432 35666544
No 48
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=59.66 E-value=36 Score=28.27 Aligned_cols=95 Identities=8% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc----
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC---- 137 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~---- 137 (256)
.|.+.|++= +.+++..........|.+-.+++++..|++. .... ..|+.+...+.+.+++++.
T Consensus 125 ~L~~~G~~~-I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~---~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 191 (295)
T 3hcw_A 125 HVIEQGVDE-LIFITEKGNFEVSKDRIQGFETVASQFNLDY---QIIE---------TSNEREVILNYMQNLHTRLKDPN 191 (295)
T ss_dssp HHHHHCCSE-EEEEEESSCCHHHHHHHHHHHHHHHHTTCEE---EEEE---------ECSCHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHcCCcc-EEEEcCCccchhHHHHHHHHHHHHHHcCCCe---eEEe---------ccCCHHHHHHHHHHHHhhcccCC
Confidence 456778763 3444322222235678888999999999832 2111 1234555666777777765
Q ss_pred CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 138 SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
+||.||+.+ | ..+..+.++++..+ ++++.+.-
T Consensus 192 ~~~ai~~~~--------d--~~A~g~~~al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 192 IKQAIISLD--------A--MLHLAILSVLYELNIEIPKDVMTAT 226 (295)
T ss_dssp SCEEEEESS--------H--HHHHHHHHHHHHTTCCTTTTEEEEE
T ss_pred CCcEEEECC--------h--HHHHHHHHHHHHcCCCCCCceEEEE
Confidence 699999873 2 23445566665543 34565543
No 49
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=58.98 E-value=30 Score=28.83 Aligned_cols=98 Identities=13% Similarity=-0.037 Sum_probs=53.9
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++ -+||
T Consensus 120 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 189 (294)
T 3qk7_A 120 RLLELGHQ-RIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQK---------ADPTRPGGYLAASRLLALEVPPT 189 (294)
T ss_dssp HHHHTTCC-CEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEE---------ECSSHHHHHHHHHHHHHSSSCCS
T ss_pred HHHHCCCc-eEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeec---------CCCCHHHHHHHHHHHHcCCCCCc
Confidence 45567765 223333222222345788888899988887432111111 123455666677777775 4689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 190 ai~~~n--------d~--~A~g~~~al~~~G~~vP~di~vig 221 (294)
T 3qk7_A 190 AIITDC--------NM--LGDGVASALDKAGLLGGEGISLIA 221 (294)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCSSTTSCEEEE
T ss_pred EEEECC--------HH--HHHHHHHHHHHcCCCCCCceEEEe
Confidence 999873 33 3344666665543 24555543
No 50
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=56.64 E-value=72 Score=27.62 Aligned_cols=89 Identities=16% Similarity=0.147 Sum_probs=57.2
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025219 59 TINYLTSRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (256)
Q Consensus 59 tl~~l~~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (256)
-++++.++|....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++=++-
T Consensus 22 ~v~~l~~~g~~P~Lavilvg~dpas~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~i~~lN~D~ 89 (281)
T 2c2x_A 22 RVAALDAAGRTPGLGTILVGDDPGSQAYVRGK--HADCAKVGI---TSIRRDLPAD-------ISTATLNETIDELNANP 89 (281)
T ss_dssp HHHHHHHTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcCCCceEEEEEeCCChhhHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCCC
Confidence 3455666786556666655543 233445554 489999999 4555666541 14578888888887776
Q ss_pred CCCEEEecCCCCCCCCchHHHHHH
Q 025219 138 SIDLIITFDNYGVSGHCNHRDVHH 161 (256)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~v~~ 161 (256)
+.|=|+.. .+.-.|.|-..+-+
T Consensus 90 ~v~GIlvq--lPlP~~id~~~i~~ 111 (281)
T 2c2x_A 90 DCTGYIVQ--LPLPKHLDENAALE 111 (281)
T ss_dssp TCCEEEEC--SCCCTTSCHHHHHH
T ss_pred CCCEEEEe--CCCCCCCCHHHHHh
Confidence 77778888 44446777766543
No 51
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=56.61 E-value=47 Score=27.40 Aligned_cols=98 Identities=6% Similarity=0.039 Sum_probs=54.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++... ... ....|+.+...+.+.+++++. +||
T Consensus 121 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~---~~~------~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (288)
T 3gv0_A 121 RLAQCGRK-RIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFP---IDA------VTIETPLEKIRDFGQRLMQSSDRPD 190 (288)
T ss_dssp HHHHTTCC-EEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECC---CCS------CCTTSCHHHHHHHHHHHTTSSSCCS
T ss_pred HHHHCCCC-eEEEEcCCcccchHHHHHHHHHHHHHHcCCCcch---hhe------eccccchHHHHHHHHHHHhCCCCCc
Confidence 44566765 3344433222223566888888899888873211 000 011245566677788888764 689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 191 ai~~~~--------d~--~A~g~~~al~~~g~~vP~di~vig 222 (288)
T 3gv0_A 191 GIVSIS--------GS--STIALVAGFEAAGVKIGEDVDIVS 222 (288)
T ss_dssp EEEESC--------HH--HHHHHHHHHHTTTCCTTTSCEEEE
T ss_pred EEEEcC--------cH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 999872 33 3344566665543 24555543
No 52
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=56.43 E-value=67 Score=26.34 Aligned_cols=45 Identities=11% Similarity=0.123 Sum_probs=27.6
Q ss_pred HHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 92 HRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 92 ~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
.+.|+..|+| +...+..++. +.++--+.+.+.+++++||+|++..
T Consensus 43 ~~~A~~~gIp---~~~~~~~~~~-------~r~~~~~~~~~~l~~~~~Dliv~ag 87 (212)
T 1jkx_A 43 LERARQAGIA---THTLIASAFD-------SREAYDRELIHEIDMYAPDVVVLAG 87 (212)
T ss_dssp HHHHHHTTCE---EEECCGGGCS-------SHHHHHHHHHHHHGGGCCSEEEESS
T ss_pred HHHHHHcCCc---EEEeCccccc-------chhhccHHHHHHHHhcCCCEEEEeC
Confidence 4566778993 4444322221 2233344567788999999999873
No 53
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=55.98 E-value=61 Score=24.24 Aligned_cols=76 Identities=14% Similarity=0.214 Sum_probs=52.9
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDK 119 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~ 119 (256)
-.+++|..--|-|- .-..|....+.|.+|.+++-... .-|++|+.+-.+.-|+ ++..
T Consensus 78 ldvvvivttddkew--ikdfieeakergvevfvvynnkd------ddrrkeaqqefrsdgv---dvrt------------ 134 (162)
T 2l82_A 78 LDVVVIVTTDDKEW--IKDFIEEAKERGVEVFVVYNNKD------DDRRKEAQQEFRSDGV---DVRT------------ 134 (162)
T ss_dssp CCEEEEEECCCHHH--HHHHHHHHHHTTCEEEEEEECSC------HHHHHHHHHHHCCSSC---EEEE------------
T ss_pred CcEEEEEecCcHHH--HHHHHHHHHhcCcEEEEEecCCC------chhHHHHHHHhhhcCc---eeee------------
Confidence 34666666545554 46678888899999988875443 5788998887777777 2321
Q ss_pred cCChHHHHHHHHHHHHhcC
Q 025219 120 LWNHKSLAKIVEEEVVNCS 138 (256)
Q Consensus 120 ~~~~~~l~~~l~~~i~~~~ 138 (256)
..+.+++++.+.+++++..
T Consensus 135 vsdkeelieqvrrfvrkvg 153 (162)
T 2l82_A 135 VSDKEELIEQVRRFVRKVG 153 (162)
T ss_dssp ESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhc
Confidence 2256788888888888754
No 54
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=55.71 E-value=46 Score=29.13 Aligned_cols=85 Identities=13% Similarity=0.303 Sum_probs=50.0
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~-~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
..|+++++.. | +.-++|..|.++|++|. .++|..+.. +. .+.......+.|+.+|++ + +...+.
T Consensus 2 ~mrivf~Gtp--~---fa~~~L~~L~~~~~~v~-~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp---v--~~~~~~--- 67 (314)
T 3tqq_A 2 SLKIVFAGTP--Q---FAVPTLRALIDSSHRVL-AVYTQPDRPSGRGQKIMESPVKEIARQNEIP---I--IQPFSL--- 67 (314)
T ss_dssp CCEEEEEECS--G---GGHHHHHHHHHSSSEEE-EEECCCC----------CCHHHHHHHHTTCC---E--ECCSCS---
T ss_pred CcEEEEECCC--H---HHHHHHHHHHHCCCeEE-EEEeCCCCccccCCccCCCHHHHHHHHcCCC---E--ECcccC---
Confidence 3678888875 2 33478999999999874 455654421 11 122334556788889994 2 222221
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..+ .+.+.+++.+||++++..
T Consensus 68 -----~~~----~~~~~l~~~~~Dliv~~~ 88 (314)
T 3tqq_A 68 -----RDE----VEQEKLIAMNADVMVVVA 88 (314)
T ss_dssp -----SSH----HHHHHHHTTCCSEEEEES
T ss_pred -----CCH----HHHHHHHhcCCCEEEEcC
Confidence 112 345667888999998874
No 55
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=55.41 E-value=36 Score=28.01 Aligned_cols=99 Identities=7% Similarity=-0.000 Sum_probs=54.4
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccC----ChHHHHHHHHHHHH
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLW----NHKSLAKIVEEEVV 135 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~----~~~~l~~~l~~~i~ 135 (256)
..+.+.|++ .+.+++..........|.+-.+++++..|++... ..+... ..| +.+...+.+.++++
T Consensus 115 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~--------~~~~~~~~~~~~~~~~~~~l~ 185 (288)
T 2qu7_A 115 KRVLESTCK-EVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSD--------QQLGTNAQIYSGYEATKTLLS 185 (288)
T ss_dssp HHHHTSSCC-CEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECC--------SSCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCC-cEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEecc--------CCccccCCHHHHHHHHHHHHh
Confidence 345667875 2344443222223567888889999999974221 111000 113 33445566777777
Q ss_pred hcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 136 NCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 136 ~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
+ +||.||+.+ |..+ ..+.++++..+ ++++.+.-
T Consensus 186 ~-~~~ai~~~~--------d~~a--~g~~~al~~~g~~vP~di~vvg 221 (288)
T 2qu7_A 186 K-GIKGIVATN--------HLLL--LGALQAIKESEKEIKKDVIIVG 221 (288)
T ss_dssp T-TCCEEEECS--------HHHH--HHHHHHHHHSSCCBTTTBEEEE
T ss_pred c-CCCEEEECC--------cHHH--HHHHHHHHHhCCCCCCceEEEE
Confidence 7 999999862 3333 34556665543 24555543
No 56
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=54.67 E-value=28 Score=28.66 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEecCCCCCCCCchHHHHHHH
Q 025219 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (256)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~v~~a 162 (256)
...|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++. +||.||+.+ | ..+..
T Consensus 142 ~~~R~~gf~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ai~~~~--------d--~~a~g 202 (289)
T 3g85_A 142 MDNRNKGFIETCHKNGIKISENHIIA---------AENSIHGGVDAAKKLMKLKNTPKALFCNS--------D--SIALG 202 (289)
T ss_dssp HHHHHHHHHHHHHHTTCBCCGGGEEE---------CCSSHHHHHHHHHHHTTSSSCCSEEEESS--------H--HHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChhheec---------cCCCHHHHHHHHHHHHcCCCCCcEEEEcC--------C--HHHHH
Confidence 45688888888888887432111111 1234556667777777754 689998862 2 23344
Q ss_pred HHHHHhhcC---CCceeEEE
Q 025219 163 IWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 163 v~~a~~~~~---~~~~~~~e 179 (256)
+.++++..+ ++++.+.-
T Consensus 203 ~~~al~~~g~~vP~di~vig 222 (289)
T 3g85_A 203 VISVLNKRQISIPDDIEIVA 222 (289)
T ss_dssp HHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHcCCCCCCceEEEE
Confidence 556665443 24555543
No 57
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=53.62 E-value=48 Score=28.95 Aligned_cols=86 Identities=15% Similarity=0.138 Sum_probs=49.3
Q ss_pred EEEEecCchhhhcchHHHHH---HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc
Q 025219 42 VLLVIAHPDDESMFFSPTIN---YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD 118 (256)
Q Consensus 42 vLvv~aHPDDE~l~~Ggtl~---~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~ 118 (256)
+|+++=|.|.. +....++. ...+-| +|+++++-.+ . ...+.+.+..+|+ ++++..+.+.+.
T Consensus 2 ilv~~e~~~g~-l~~~~~~eal~aA~~Lg-~V~av~~G~~-~-------~~~~~~~a~a~Ga--Dkv~~v~d~~l~---- 65 (307)
T 1efp_A 2 VLLLGEVTNGA-LNRDATAKAVAAVKALG-DVTVLCAGAS-A-------KAAAEEAAKIAGV--AKVLVAEDALYG---- 65 (307)
T ss_dssp EEEECCBSSSC-BCHHHHHHHHHHHGGGS-CEEEEEEETT-C-------HHHHHHHHTSTTE--EEEEEEECGGGT----
T ss_pred EEEEEeccCCE-eCchhhHHHHHHHHHhC-CEEEEEECCc-h-------HHHHHHHHHhcCC--CEEEEecCchhc----
Confidence 67777774432 22011222 222225 7887777543 1 1222445566799 778888765432
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..+.+...+.|.++ +.+||+|++..
T Consensus 66 -~~~~~~~a~~La~~--~~~pd~VL~g~ 90 (307)
T 1efp_A 66 -HRLAEPTAALIVGL--AGDYSHIAAPA 90 (307)
T ss_dssp -TCCHHHHHHHHHHH--HTTCSEEEEES
T ss_pred -cCCHHHHHHHHHHH--ccCCCEEEEeC
Confidence 13456677777777 55899999883
No 58
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Probab=53.07 E-value=74 Score=24.30 Aligned_cols=82 Identities=12% Similarity=0.181 Sum_probs=44.7
Q ss_pred EEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCC
Q 025219 43 LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWN 122 (256)
Q Consensus 43 Lvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~ 122 (256)
|.+++.|..+ ....++++|.+|.+...+..+.... .+..+.++..|. ++..+.. |..+ .+
T Consensus 22 l~~s~~p~~a------~a~~La~~Ga~vvi~~r~~~e~~~~-----~~~~~~~~~~G~---~~~~i~~-Dv~~-----~~ 81 (157)
T 3gxh_A 22 LLSSGLPNEQ------QFSLLKQAGVDVVINLMPDSSKDAH-----PDEGKLVTQAGM---DYVYIPV-DWQN-----PK 81 (157)
T ss_dssp EEEEBCCCHH------HHHHHHHTTCCEEEECSCTTSTTSC-----TTHHHHHHHTTC---EEEECCC-CTTS-----CC
T ss_pred eeEcCCCCHH------HHHHHHHcCCCEEEECCCccccccc-----ccHHHHHHHcCC---eEEEecC-CCCC-----CC
Confidence 7889998754 4667889999985432222222111 123345566787 3444433 3211 12
Q ss_pred hHHHHHHHHHHHHhcCCCEEEec
Q 025219 123 HKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 123 ~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
.+++.+.+..+.+++..|++ .+
T Consensus 82 ~~~v~~~~~~i~~~~G~dVL-Vn 103 (157)
T 3gxh_A 82 VEDVEAFFAAMDQHKGKDVL-VH 103 (157)
T ss_dssp HHHHHHHHHHHHHTTTSCEE-EE
T ss_pred HHHHHHHHHHHHhcCCCCEE-EE
Confidence 35666666666665666655 55
No 59
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=52.95 E-value=69 Score=26.35 Aligned_cols=92 Identities=11% Similarity=0.192 Sum_probs=52.7
Q ss_pred CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc---CCCEE
Q 025219 66 RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC---SIDLI 142 (256)
Q Consensus 66 ~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~---~Pd~V 142 (256)
.|+ ..+++++..........|.+-.+++++..|++.+..... . ..|+.+...+.+.+++++. +||.|
T Consensus 138 ~g~-~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~-~--------~~~~~~~~~~~~~~~l~~~~~~~~~ai 207 (309)
T 2fvy_A 138 DGQ-IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD-T--------AMWDTAQAKDKMDAWLSGPNANKIEVV 207 (309)
T ss_dssp SSS-EEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEE-E--------CTTCHHHHHHHHHHHHTSTTGGGCCEE
T ss_pred CCc-eEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEe-c--------CCCCHHHHHHHHHHHHHhCCCCCccEE
Confidence 455 345555433222345678888999999999732111111 1 1245556667778888764 68999
Q ss_pred EecCCCCCCCCchHHHHHHHHHHHHhhcCCC-ceeEE
Q 025219 143 ITFDNYGVSGHCNHRDVHHGIWSYLNGTSER-NIEAW 178 (256)
Q Consensus 143 ~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~-~~~~~ 178 (256)
|+.+ |.. +..+.++++..+ . ++.+.
T Consensus 208 ~~~~--------d~~--a~g~~~al~~~g-~~di~vi 233 (309)
T 2fvy_A 208 IANN--------DAM--AMGAVEALKAHN-KSSIPVF 233 (309)
T ss_dssp EESS--------HHH--HHHHHHHHHHTT-CTTSCEE
T ss_pred EECC--------chh--HHHHHHHHHHcC-CCCceEE
Confidence 9862 333 334566665544 3 55544
No 60
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=52.52 E-value=17 Score=29.02 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=30.0
Q ss_pred CcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEEEeC
Q 025219 40 KNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILCMSN 77 (256)
Q Consensus 40 ~~vLvv~aHPD-DE~l~~Ggtl~~l~~~G~~V~vv~lT~ 77 (256)
+++|+|.+||+ ... .+...+....+...+|.+.-+-+
T Consensus 1 MkiLii~ghP~~~~S-~~~~~l~~~~~~~~~v~v~dL~~ 38 (177)
T 3ha2_A 1 MQTLIIVAHPELARS-NTQPFFKAAIENFSNVTWHPLVA 38 (177)
T ss_dssp CCEEEEECCTTTTTC-SSHHHHHHHHTTCTTEEEEECCT
T ss_pred CeEEEEEcCCCcccC-HHHHHHHHHHhcCCCEEEEECCC
Confidence 47999999999 554 67778888877778898888877
No 61
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=52.37 E-value=54 Score=27.05 Aligned_cols=98 Identities=8% Similarity=0.042 Sum_probs=52.9
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~P 139 (256)
..|.+.|++ .+.+++..........|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++. +|
T Consensus 121 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~ 190 (290)
T 2rgy_A 121 ATLIEHGHR-KLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIE---------SDFSPEGGYAATCQLLESKAPF 190 (290)
T ss_dssp HHHHHTTCC-SEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEE---------CCSSHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHCCCc-eEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEe---------cCCChhHHHHHHHHHHhCCCCC
Confidence 345567765 233343322222346688888899998887422111110 1134455556677777653 68
Q ss_pred CEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
|.||+.+ |. .+..+.++++..+ ++++.+.
T Consensus 191 ~ai~~~~--------d~--~A~g~~~al~~~G~~vP~di~vv 222 (290)
T 2rgy_A 191 TGLFCAN--------DT--MAVSALARFQQLGISVPGDVSVI 222 (290)
T ss_dssp SEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cEEEECC--------cH--HHHHHHHHHHHcCCCCCCceEEE
Confidence 9999862 22 3344566665443 2455554
No 62
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=52.16 E-value=64 Score=26.87 Aligned_cols=100 Identities=13% Similarity=0.139 Sum_probs=58.0
Q ss_pred HHH-hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc--C
Q 025219 62 YLT-SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC--S 138 (256)
Q Consensus 62 ~l~-~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~--~ 138 (256)
.+. +.|++ .+++++..........|.+-.+++++..|..+ ++.+.... ....|+.+...+.+.+++++. +
T Consensus 116 ~L~~~~G~~-~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~ 188 (313)
T 3m9w_A 116 ALVDIVPQG-NYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSG-KIKVVGDQ-----WVDGWLPENALKIMENALTANNNK 188 (313)
T ss_dssp HHHHHCSSE-EEEEEESCTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-----ECGGGCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhCCCC-cEEEEECCCCCccHHHHHHHHHHHHHhhccCC-CEEEEeec-----cCCCcCHHHHHHHHHHHHHhCCCC
Confidence 445 67887 56666543333345668888888888874321 23332210 011356677778888888875 7
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC-CceeEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE-RNIEAW 178 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~-~~~~~~ 178 (256)
|+.||+.+ | ..+..+.+|++..+. .++.+.
T Consensus 189 ~~ai~~~~--------d--~~a~g~~~al~~~G~~~di~vi 219 (313)
T 3m9w_A 189 IDAVVASN--------D--ATAGGAIQALSAQGLSGKVAIS 219 (313)
T ss_dssp CCEEEESS--------H--HHHHHHHHHHHTTTCTTTSEEC
T ss_pred eeEEEECC--------C--chHHHHHHHHHHcCCCCCcEEE
Confidence 89999873 2 344456666655433 234443
No 63
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=51.30 E-value=78 Score=27.76 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=21.6
Q ss_pred CCcEEEEecCch-hhhcchHHHHHHHHhCCCcEEEEE
Q 025219 39 KKNVLLVIAHPD-DESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 39 ~~~vLvv~aHPD-DE~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
.++||++ +.|- =-..-+-....+|.++|++|++++
T Consensus 12 ~~~Il~~-~~~~~GHv~p~l~la~~L~~~Gh~V~~~~ 47 (424)
T 2iya_A 12 PRHISFF-NIPGHGHVNPSLGIVQELVARGHRVSYAI 47 (424)
T ss_dssp CCEEEEE-CCSCHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cceEEEE-eCCCCcccchHHHHHHHHHHCCCeEEEEe
Confidence 3577776 4442 223344455666778999987764
No 64
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=51.13 E-value=49 Score=28.05 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=56.0
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cC
Q 025219 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CS 138 (256)
Q Consensus 60 l~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~ 138 (256)
...|.+.|++= +.+++..........|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++ -+
T Consensus 173 ~~~L~~~G~~~-I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~~ 242 (338)
T 3dbi_A 173 VAELINAGHQE-IAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN---------GKWTPASGAEGVEMLLERGAK 242 (338)
T ss_dssp HHHHHHTTCCS-EEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEC---------CCSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCE-EEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEe---------CCCCHHHHHHHHHHHHcCCCC
Confidence 34566778752 33333322223456788889999999998432111111 124555666677777754 46
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
||.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 243 ~~ai~~~n--------d~--~A~g~~~al~~~G~~vP~di~vvg 276 (338)
T 3dbi_A 243 FSALVASN--------DD--MAIGAMKALHERGVAVPEQVSVIG 276 (338)
T ss_dssp CSEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred CeEEEECC--------hH--HHHHHHHHHHHcCCCCCCCeEEEE
Confidence 89999872 33 3344566665543 24555543
No 65
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=50.86 E-value=98 Score=26.48 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEecCCCCCCCCchHHHHHH
Q 025219 83 MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHH 161 (256)
Q Consensus 83 ~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~v~~ 161 (256)
....|.+-.+++++..|++.....+.... .|+.+.-.+.+.+++++. +||.||+.+ |. .+.
T Consensus 220 ~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------D~--~A~ 281 (366)
T 3h5t_A 220 VQRDRVRGAMEVFIEAGIDPGTVPIMECW--------INNRQHNFEVAKELLETHPDLTAVLCTV--------DA--LAF 281 (366)
T ss_dssp THHHHHHHHHHHHHHHTCCGGGSCEEEES--------SCCHHHHHHHHHHHHHHCTTCCEEEESS--------HH--HHH
T ss_pred hHHHHHHHHHHHHHHCCCCCCcceEEEcC--------CCCHHHHHHHHHHHHcCCCCCcEEEECC--------cH--HHH
Confidence 35678899999999999854321122111 134455556667777654 689999872 33 334
Q ss_pred HHHHHHhhcC---CCceeEE
Q 025219 162 GIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 162 av~~a~~~~~---~~~~~~~ 178 (256)
.+.++++..+ ++++.+.
T Consensus 282 g~~~al~~~G~~vP~disvi 301 (366)
T 3h5t_A 282 GVLEYLKSVGKSAPADLSLT 301 (366)
T ss_dssp HHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHHcCCCCCCceEEE
Confidence 4566665543 2455554
No 66
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=50.27 E-value=66 Score=28.16 Aligned_cols=85 Identities=20% Similarity=0.237 Sum_probs=50.4
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cc-hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GM-GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~-~~-~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
.+|+++++.. | |.-++|..|.+.|++|. .++|..+.. +. .........+.|..+|+| + +...+..
T Consensus 4 mmrIvf~Gtp--~---fa~~~L~~L~~~~~~v~-~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIp---v--~~~~~~~-- 70 (317)
T 3rfo_A 4 MIKVVFMGTP--D---FSVPVLRRLIEDGYDVI-GVVTQPDRPVGRKKVLTPTPVKVEAEKHGIP---V--LQPLRIR-- 70 (317)
T ss_dssp TSEEEEECCS--T---THHHHHHHHHHTTCEEE-EEECCCCCEETTTTEECCCHHHHHHHHTTCC---E--ECCSCTT--
T ss_pred ceEEEEEeCC--H---HHHHHHHHHHHCCCcEE-EEEeCCCcccCCCcccCCCHHHHHHHHcCCC---E--EccccCC--
Confidence 4688888875 1 34578999999999874 455655431 11 112233456778889994 2 2211211
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+ ++. .+.+++.+||++++..
T Consensus 71 -----~-~~~----~~~l~~~~~Dliv~~~ 90 (317)
T 3rfo_A 71 -----E-KDE----YEKVLALEPDLIVTAA 90 (317)
T ss_dssp -----S-HHH----HHHHHHHCCSEEEESS
T ss_pred -----C-HHH----HHHHHhcCCCEEEEcC
Confidence 1 222 3446778999998874
No 67
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=50.26 E-value=44 Score=27.37 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=51.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (256)
.+.+.|++ .+.+++..........|.+-.+++++..|++...... .. ..|+.+...+.+.+++++ -+||
T Consensus 120 ~L~~~G~~-~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~--~~-------~~~~~~~~~~~~~~~l~~~~~~~ 189 (289)
T 1dbq_A 120 YLIERGHR-EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWI--VQ-------GDFEPESGYRAMQQILSQPHRPT 189 (289)
T ss_dssp HHHHTTCC-SEEEECCC------CHHHHHHHHHHHHTTCCCCGGGB--CC-------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-eEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHe--Ee-------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 45567875 2334432212223457888888999988874221100 00 124555556667777765 4689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
.|++.+ |..+ ..+.++++..+ ++++.+.-
T Consensus 190 ai~~~~--------d~~a--~g~~~al~~~G~~vP~di~vvg 221 (289)
T 1dbq_A 190 AVFCGG--------DIMA--MGALCAADEMGLRVPQDVSLIG 221 (289)
T ss_dssp EEEESC--------HHHH--HHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEEECC--------cHHH--HHHHHHHHHcCCCCCCceEEEe
Confidence 998862 3333 34556665443 24555543
No 68
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=50.05 E-value=46 Score=29.22 Aligned_cols=85 Identities=14% Similarity=0.274 Sum_probs=50.0
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC-Cch-HHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD-GMG-NIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~-~~~-~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
..|+++++.. | +.-.+|..|.++|++|. .++|+.+.. +.+ +.......+.|+.+|+| + +...+.
T Consensus 7 ~mrivf~Gt~--~---fa~~~L~~L~~~~~~v~-~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp---v--~~~~~~--- 72 (318)
T 3q0i_A 7 SLRIVFAGTP--D---FAARHLAALLSSEHEII-AVYTQPERPAGRGKKLTASPVKTLALEHNVP---V--YQPENF--- 72 (318)
T ss_dssp CCEEEEECCS--H---HHHHHHHHHHTSSSEEE-EEECCCC---------CCCHHHHHHHHTTCC---E--ECCSCS---
T ss_pred CCEEEEEecC--H---HHHHHHHHHHHCCCcEE-EEEcCCCCcccccccCCCCHHHHHHHHcCCC---E--EccCcC---
Confidence 4688888874 2 33478889999999874 455654421 111 12223456788889994 2 221121
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..+ .+.+.+++.+||++++..
T Consensus 73 -----~~~----~~~~~l~~~~~Dliv~~~ 93 (318)
T 3q0i_A 73 -----KSD----ESKQQLAALNADLMVVVA 93 (318)
T ss_dssp -----CSH----HHHHHHHTTCCSEEEESS
T ss_pred -----CCH----HHHHHHHhcCCCEEEEeC
Confidence 112 345667888999998864
No 69
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=48.90 E-value=95 Score=25.50 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=55.5
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSI 139 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~P 139 (256)
..|.+.|++ .+.+++... ......|.+-.+++++..|++... .+.. . .|+.+...+.+.+++++ -+|
T Consensus 119 ~~L~~~G~~-~I~~i~~~~-~~~~~~R~~Gf~~al~~~g~~~~~-~~~~-~--------~~~~~~~~~~~~~~l~~~~~~ 186 (289)
T 3k9c_A 119 DHLTELGHR-NIAHIDGAD-APGGADRRAGFLAAMDRHGLSASA-TVVT-G--------GTTETEGAEGMHTLLEMPTPP 186 (289)
T ss_dssp HHHHHTTCC-SEEEECCTT-STTHHHHHHHHHHHHHHTTCGGGE-EEEC-C--------CSSHHHHHHHHHHHHTSSSCC
T ss_pred HHHHHCCCC-cEEEEeCCC-CccHHHHHHHHHHHHHHCCCCCCc-cEEE-C--------CCCHHHHHHHHHHHHcCCCCC
Confidence 345677875 233343322 225677888899999999984322 2221 1 13455666677777775 368
Q ss_pred CEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
|.||+.+ |. .+..+.++++..+ ++++.+.
T Consensus 187 ~ai~~~~--------d~--~A~g~~~al~~~g~~vP~di~vi 218 (289)
T 3k9c_A 187 TAVVAFN--------DR--CATGVLDLLVRSGRDVPADISVV 218 (289)
T ss_dssp SEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CEEEECC--------hH--HHHHHHHHHHHcCCCCCCceEEE
Confidence 9999873 22 3445566665543 2455554
No 70
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=48.58 E-value=83 Score=25.52 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=56.1
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (256)
.|.+.|++ .+.+++.. ... ...|.+-.+++++..|++.. ... .. ..|+.+...+.+.+++++. +||
T Consensus 112 ~L~~~G~~-~i~~i~~~-~~~-~~~R~~gf~~~l~~~~~~~~--~~~-~~-------~~~~~~~~~~~~~~~l~~~~~~~ 178 (280)
T 3gyb_A 112 HLIDLGHT-HIAHLRVG-SGA-GLRRFESFEATMRAHGLEPL--SND-YL-------GPAVEHAGYTETLALLKEHPEVT 178 (280)
T ss_dssp HHHHTTCC-SEEEECCS-SHH-HHHHHHHHHHHHHHTTCCCE--ECC-CC-------SCCCHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHCCCC-eEEEEeCC-Cch-HHHHHHHHHHHHHHcCcCCC--ccc-cc-------CCCCHHHHHHHHHHHHhCCCCCC
Confidence 45677876 23334332 222 67788889999999998431 111 11 1245566677778888764 689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEEe
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWEL 180 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e~ 180 (256)
.||+.+ |. .+..+.++++..+ ++++.+.-.
T Consensus 179 ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg~ 211 (280)
T 3gyb_A 179 AIFSSN--------DI--TAIGALGAARELGLRVPEDLSIIGY 211 (280)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHHTCCTTTTCEEEEE
T ss_pred EEEECC--------hH--HHHHHHHHHHHcCCCCCCeeEEEEE
Confidence 998872 32 3344555655433 245655543
No 71
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=48.21 E-value=97 Score=26.83 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=54.6
Q ss_pred HHHHHhCCCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 025219 60 INYLTSRRHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (256)
Q Consensus 60 l~~l~~~G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~ 138 (256)
++++.++|....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++-.+-+
T Consensus 24 v~~l~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~~ 91 (285)
T 3p2o_A 24 NQFLKSKGIESCLAVILVGDNPASQTYVKSK--AKACEECGI---KSLVYHLNEN-------ITQNELLALINTLNHDDS 91 (285)
T ss_dssp HHHHHTTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcCCCCeEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCCC
Confidence 445556666666666655543 223344554 489999999 4556666541 145788888888777667
Q ss_pred CCEEEecCCCCCCCCchHHHHHH
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHH 161 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~ 161 (256)
.+=|+..=| .-.|.|-..+-+
T Consensus 92 v~GIlvqlP--lp~~id~~~v~~ 112 (285)
T 3p2o_A 92 VHGILVQLP--LPDHICKDLILE 112 (285)
T ss_dssp CCEEEECSC--CCTTSCHHHHHH
T ss_pred CCEEEecCC--CCCCcCHHHHHh
Confidence 777887733 335666555433
No 72
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=47.97 E-value=52 Score=25.90 Aligned_cols=63 Identities=11% Similarity=0.105 Sum_probs=35.7
Q ss_pred EEEEEeCCCCCCc-hHHHHHHHHHHHHHcCCCCCcEEEc-cCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 71 HILCMSNGNADGM-GNIRKDELHRACAVLKIPLEQVKVL-DLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 71 ~vv~lT~G~~~~~-~~~R~~E~~~A~~~LGv~~~~~~~l-~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
.+-++|.|+.-+. .+.=..-+.+.++.+|+ ++... -.|| +.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 12 ~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 12 RIAILTVSNRRGEEDDTSGHYLRDSAQEAGH---HVVDKAIVKE---------NRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp EEEEEEECSSCCGGGCHHHHHHHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred EEEEEEEeCCCCcccCccHHHHHHHHHHCCC---eEeEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEeC
Confidence 4445555554221 11112335566677888 23222 2233 346778888888775568999998
No 73
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=47.93 E-value=50 Score=27.19 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccCChHHHHHHHHHHHH-hc--CCCEEEecCCCCCCCCchHHHH
Q 025219 84 GNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV-NC--SIDLIITFDNYGVSGHCNHRDV 159 (256)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~-~~--~Pd~V~t~d~~g~d~H~DH~~v 159 (256)
...|.+-.+++++..|++... ..+. ..|+.+...+.+.++++ +. +||.||+.+ |..
T Consensus 140 ~~~R~~Gf~~~l~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~~--------d~~-- 199 (287)
T 3bbl_A 140 GNDRLQGYLEAMQTAQLPIETGYILR----------GEGTFEVGRAMTLHLLDLSPERRPTAIMTLN--------DTM-- 199 (287)
T ss_dssp HHHHHHHHHHHHHHTTCCCCGGGEEE----------CCSSHHHHHHHHHHHHTSCTTTSCSEEEESS--------HHH--
T ss_pred HHHHHHHHHHHHHHcCCCCChhhEEe----------CCCCHHHHHHHHHHHHhhCCCCCCcEEEECC--------cHH--
Confidence 456778888888888874221 1111 11345555667777777 54 689999862 333
Q ss_pred HHHHHHHHhhcC---CCceeEEE
Q 025219 160 HHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 160 ~~av~~a~~~~~---~~~~~~~e 179 (256)
+..+.++++..+ ++++.+.-
T Consensus 200 a~g~~~al~~~G~~vP~di~vig 222 (287)
T 3bbl_A 200 AIGAMAAARERGLTIGTDLAIIG 222 (287)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEE
T ss_pred HHHHHHHHHHcCCCCCCCEEEEE
Confidence 344556665443 24555543
No 74
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=47.87 E-value=77 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=28.2
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.|+..|+| +...+..++. +.++.-+.+.+.+++++||+|++..
T Consensus 51 ~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 94 (209)
T 4ds3_A 51 AKAEAAGIA---TQVFKRKDFA-------SKEAHEDAILAALDVLKPDIICLAG 94 (209)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred HHHHHcCCC---EEEeCccccC-------CHHHHHHHHHHHHHhcCCCEEEEec
Confidence 467778994 4444433321 2333345677888999999999874
No 75
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=47.76 E-value=74 Score=27.88 Aligned_cols=80 Identities=14% Similarity=0.139 Sum_probs=52.1
Q ss_pred CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 67 RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 67 G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
|....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++-++-+.+=|+..
T Consensus 51 g~~P~LavIlVG~dpaS~~Yv~~K--~k~c~~vGi---~s~~~~lp~~-------~se~ell~~I~~LN~D~~V~GIlVQ 118 (303)
T 4b4u_A 51 GRTPILATILVGDDGASATYVRMK--GNACRRVGM---DSLKIELPQE-------TTTEQLLAEIEKLNANPDVHGILLQ 118 (303)
T ss_dssp SCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCTTCCEEEEC
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEecCcc-------CCHHHHHHHHHHhcCCCCccEEEEe
Confidence 77666666666653 233444555 489999999 4555666541 1457888888888777677778888
Q ss_pred CCCCCCCCchHHHHH
Q 025219 146 DNYGVSGHCNHRDVH 160 (256)
Q Consensus 146 d~~g~d~H~DH~~v~ 160 (256)
.+.-.|.|-..+-
T Consensus 119 --lPLP~hid~~~i~ 131 (303)
T 4b4u_A 119 --HPVPAQIDERACF 131 (303)
T ss_dssp --SSCCTTSCHHHHH
T ss_pred --CCCccccChHHHH
Confidence 4444677765543
No 76
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=46.95 E-value=68 Score=26.34 Aligned_cols=98 Identities=14% Similarity=0.067 Sum_probs=52.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (256)
.+.+.|++- +.+++..........|.+-.+++++..|++........ ..|+.+...+.+.++++.-+||.
T Consensus 119 ~L~~~G~~~-i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~a 188 (290)
T 3clk_A 119 LLINEGHRQ-IGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKP---------GDYSYTSGEQAMKAFGKNTDLTG 188 (290)
T ss_dssp HHHTTTCCS-EEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEEC---------CCSSHHHHHHHHHHHCTTCCCSE
T ss_pred HHHHcCCCE-EEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEc---------CCCChhhHHHHHHHHhccCCCcE
Confidence 455677652 33443322223456788889999999887432110110 11344445556666665346899
Q ss_pred EEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 142 IITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 142 V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
||+.+ |.. +..+.++++..+ ++++.+.-
T Consensus 189 i~~~~--------d~~--a~g~~~al~~~g~~vP~di~vvg 219 (290)
T 3clk_A 189 IIAAS--------DMT--AIGILNQASSFGIEVPKDLSIVS 219 (290)
T ss_dssp EEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEEE
T ss_pred EEECC--------cHH--HHHHHHHHHHcCCCCCCceEEEE
Confidence 98862 333 334555665443 24555543
No 77
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=46.57 E-value=1.1e+02 Score=25.88 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=54.7
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~P 139 (256)
..|.+.|++- +.+++ |........|.+-.+++++..|++.....+.... .|+.+...+.+.+++++. +|
T Consensus 171 ~~L~~~G~~~-I~~i~-~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~ 240 (339)
T 3h5o_A 171 RHLLSRGKRR-IGFLG-AQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQ--------PSSMQMGADMLDRALAERPDC 240 (339)
T ss_dssp HHHHHTTCCS-EEEEE-ESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECS--------CCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHCCCCe-EEEEe-CCCCccHHHHHHHHHHHHHHCCCCCCChheEecC--------CCCHHHHHHHHHHHHcCCCCC
Confidence 3566778752 22222 2222234668888999999999832222222211 134455566777777764 68
Q ss_pred CEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
|.||+.+ |. .+..+..+++..+ ++++.+.
T Consensus 241 ~ai~~~n--------D~--~A~g~~~al~~~G~~vP~disvv 272 (339)
T 3h5o_A 241 DALFCCN--------DD--LAIGALARSQQLGIAVPERLAIA 272 (339)
T ss_dssp CEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred cEEEECC--------hH--HHHHHHHHHHHcCCCCCCCEEEE
Confidence 9999872 32 3444556665543 2455544
No 78
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=46.56 E-value=29 Score=28.86 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=51.0
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC-C-CCCCCccccCChHH--HHHHHHHHHHh
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL-V-DFQDGFDKLWNHKS--LAKIVEEEVVN 136 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~-~-d~~dg~~~~~~~~~--l~~~l~~~i~~ 136 (256)
..|.+.|++ .+.+++..........|.+-.+++++..|++.....+..- + +. +.+. +.+.+.+++++
T Consensus 124 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~ 194 (301)
T 3miz_A 124 RYLLERGHR-RIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPV--------GAENNYVFAAATEMLKQ 194 (301)
T ss_dssp HHHHTTTCC-SEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESST--------TSCEECHHHHHHHHHTS
T ss_pred HHHHHcCCC-eEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCc--------CccccHHHHHHHHHHcC
Confidence 356678876 3444543332234567888899999999985433322221 0 11 1111 11455666654
Q ss_pred c-CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC
Q 025219 137 C-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (256)
Q Consensus 137 ~-~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~ 171 (256)
. +||.||+.+ |. .+..+.++++..+
T Consensus 195 ~~~~~ai~~~~--------d~--~A~g~~~al~~~g 220 (301)
T 3miz_A 195 DDRPTAIMSGN--------DE--MAIQIYIAAMALG 220 (301)
T ss_dssp TTCCSEEEESS--------HH--HHHHHHHHHHTTT
T ss_pred CCCCcEEEECC--------HH--HHHHHHHHHHHcC
Confidence 3 689999872 22 4455666766544
No 79
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=46.43 E-value=1.1e+02 Score=24.83 Aligned_cols=92 Identities=7% Similarity=0.051 Sum_probs=54.3
Q ss_pred CCc----EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025219 67 RHN----LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (256)
Q Consensus 67 G~~----V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (256)
|++ -.+++++..........|.+-.+++++.. |++ +..... ..|+.+...+.+.+++++. +||
T Consensus 129 g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~ 197 (293)
T 3l6u_A 129 KQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLS---IVDSVS--------GNYDPVTSERVMRQVIDSGIPFD 197 (293)
T ss_dssp HHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHTTCCCS
T ss_pred cCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcE---Eeeecc--------CCCCHHHHHHHHHHHHHhCCCCC
Confidence 655 45666654333334567888899999888 762 211111 1245667777788888764 689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~e 179 (256)
.||+.+ |. .+..+.++++..+.+++.+.-
T Consensus 198 ai~~~~--------d~--~a~g~~~al~~~g~~di~vig 226 (293)
T 3l6u_A 198 AVYCHN--------DD--IAMGVLEALKKAKISGKIVVG 226 (293)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEECC--------ch--HHHHHHHHHHhCCCCCeEEEE
Confidence 998872 22 334456666655444555543
No 80
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=46.21 E-value=71 Score=27.14 Aligned_cols=76 Identities=9% Similarity=0.054 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEecCCCCCCCCchHHHHHHH
Q 025219 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (256)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~v~~a 162 (256)
...|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++. +||.||+.+ |. .+..
T Consensus 201 ~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------d~--~A~g 261 (344)
T 3kjx_A 201 ARKRFEGFTEVLGKNGVEIEDREFYS---------GGSALAKGREMTQAMLERSPDLDFLYYSN--------DM--IAAG 261 (344)
T ss_dssp HHHHHHHHHHHHHHTTCCCSCEEECS---------SCCCHHHHHHHHHHHHHHSTTCCEEEESS--------HH--HHHH
T ss_pred HHHHHHHHHHHHHHcCCCCChheEEe---------CCCCHHHHHHHHHHHHhcCCCCCEEEECC--------HH--HHHH
Confidence 45688888899999888543332221 1234555666777778765 789999862 32 3344
Q ss_pred HHHHHhhcC---CCceeEE
Q 025219 163 IWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 163 v~~a~~~~~---~~~~~~~ 178 (256)
+..+++..+ ++++.+.
T Consensus 262 ~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 262 GLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHHcCCCCCCceEEE
Confidence 555665543 2455443
No 81
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=45.59 E-value=88 Score=27.30 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=36.1
Q ss_pred CCCCCcEEEEecC--chhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 025219 36 TGDKKNVLLVIAH--PDDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (256)
Q Consensus 36 ~~~~~~vLvv~aH--PDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (256)
+..+.+|-+|+|= .+.+.+ --.+.++.+.|.+|.+--.+... ..+..+.|.+|+.+|.+-=.+
T Consensus 14 L~~Gd~I~ivaPSs~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i 81 (311)
T 1zl0_A 14 QPIDGRVALIAPASAIATDVL--EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDI 81 (311)
T ss_dssp CCCCSEEEEECCSBCCCHHHH--HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTE
T ss_pred CCCcCEEEEEeCCCCCCHHHH--HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCC
Confidence 3556677777762 233333 44567777788877543222111 134567788888877754443
No 82
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=45.57 E-value=54 Score=27.30 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=53.5
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHH-----HHh
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE-----VVN 136 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~-----i~~ 136 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++.....+.. ..|+.+...+.+.++ +++
T Consensus 125 ~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~l~~ 194 (303)
T 3kke_A 125 HLITLGHS-RIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVD---------AGWEADAGSAALNTLYRGANLGK 194 (303)
T ss_dssp HHHHTTCC-SEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEE---------CCSSHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHCCCC-eEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEe---------cCCChHHHHHHHHHhcchhhhcC
Confidence 55677765 233443322223456788888999999988532111111 113445555566666 654
Q ss_pred -cCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 137 -CSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 137 -~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
-+||.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 195 ~~~~~ai~~~n--------d~--~A~g~~~al~~~G~~vP~di~vig 231 (303)
T 3kke_A 195 PDGPTAVVVAS--------VN--AAVGALSTALRLGLRVPEDLSIVG 231 (303)
T ss_dssp TTSCSEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred CCCCcEEEECC--------HH--HHHHHHHHHHHcCCCCCCceEEEE
Confidence 3689999872 33 3344556665543 24555543
No 83
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=45.44 E-value=1.2e+02 Score=24.37 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=55.7
Q ss_pred HHHhC----CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025219 62 YLTSR----RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (256)
Q Consensus 62 ~l~~~----G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (256)
.+.+. |++ .+.+++..........|.+-.+++++.. |+ .+. .... ..|+.+...+.+.+++++
T Consensus 117 ~l~~~~~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~---~~~--~~~~------~~~~~~~~~~~~~~~l~~ 184 (276)
T 3ksm_A 117 ALLATLDLSKER-NIALLRLRAGNASTDQREQGFLDVLRKHDKI---RII--AAPY------AGDDRGAARSEMLRLLKE 184 (276)
T ss_dssp HHHHHSCTTSCE-EEEECBCCTTCHHHHHHHHHHHHHHTTCTTE---EEE--ECCB------CCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCcCCCc-eEEEEEcCCCchhHHHHHHHHHHHHHhCCCc---EEE--EEec------CCCcHHHHHHHHHHHHHh
Confidence 44455 764 4555543322234567888888888877 66 222 1111 124566777788888887
Q ss_pred c-CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC-CCceeEEEe
Q 025219 137 C-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS-ERNIEAWEL 180 (256)
Q Consensus 137 ~-~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~-~~~~~~~e~ 180 (256)
. +||.|++.+ |.. +..+.++++..+ ++++.+.-.
T Consensus 185 ~~~~~ai~~~~--------d~~--a~g~~~al~~~g~p~di~vig~ 220 (276)
T 3ksm_A 185 TPTIDGLFTPN--------EST--TIGALVAIRQSGMSKQFGFIGF 220 (276)
T ss_dssp CSCCCEEECCS--------HHH--HHHHHHHHHHTTCTTSSEEEEE
T ss_pred CCCceEEEECC--------chh--hhHHHHHHHHcCCCCCeEEEEe
Confidence 6 689998762 333 334555655443 356666543
No 84
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=45.13 E-value=88 Score=25.60 Aligned_cols=94 Identities=11% Similarity=0.041 Sum_probs=50.3
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHH--HHHhc-C
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEE--EVVNC-S 138 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~--~i~~~-~ 138 (256)
.|.+.|++- +.+++..........|.+-.+++++..|++.. +...+ |+.+...+.+.+ ++++. +
T Consensus 118 ~L~~~G~~~-I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~-----------~~~~~~~~~~~~~~~l~~~~~ 184 (285)
T 3c3k_A 118 QLVKSGKKR-IALINHDLAYQYAQHRESGYLNRLKFHGLDYS-RISYA-----------ENLDYMAGKLATFSLLKSAVK 184 (285)
T ss_dssp HHHHTTCCC-EEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-EEEEC-----------SSSSHHHHHHHHHHHHSSSSC
T ss_pred HHHHcCCCe-EEEEeCCCccccHHHHHHHHHHHHHHcCCCce-EeecC-----------CChHHHHHHHHHHHHHcCCCC
Confidence 455677652 33333322222356688888899999898433 21111 222333455666 66654 6
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
||.||+.+ |.. +..+.++++..+ ++++.+.
T Consensus 185 ~~ai~~~~--------d~~--A~g~~~al~~~g~~vP~di~vv 217 (285)
T 3c3k_A 185 PDAIFAIS--------DVL--AAGAIQALTESGLSIPQDVAVV 217 (285)
T ss_dssp CSEEEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEE
T ss_pred CeEEEECC--------HHH--HHHHHHHHHHcCCCCCCceEEE
Confidence 89999862 222 344556665433 2455554
No 85
>1pdo_A Mannose permease; phosphoenolpyruvate dependent phosphotransferase system, phosphotransferase; 1.70A {Escherichia coli} SCOP: c.54.1.1 PDB: 1vrc_A 1vsq_A* 2jzo_A 2jzn_A
Probab=45.13 E-value=72 Score=23.92 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=45.5
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEecCC
Q 025219 71 HILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDN 147 (256)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~ 147 (256)
.++.+|.|. =.+++.++++.+ |- .+++..++++... +.+++.+.+.+.+++.+. .+++..|-
T Consensus 3 ~iii~sHG~-------~A~gl~~~~~~i~G~-~~~v~ai~~~~~~-------~~~~~~~~i~~~i~~~~~~~gvliLtDl 67 (135)
T 1pdo_A 3 AIVIGTHGW-------AAEQLLKTAEMLLGE-QENVGWIDFVPGE-------NAETLIEKYNAQLAKLDTTKGVLFLVDT 67 (135)
T ss_dssp EEEEECSBT-------HHHHHHHHHHHHHCC-CSSEEEECBCTTC-------CHHHHHHHHHHHHTTSCCTTCEEEEESS
T ss_pred eEEEEeChH-------HHHHHHHHHHHHcCC-cCCEEEEEeeCCC-------CHHHHHHHHHHHHHhcCCCCCEEEEEEC
Confidence 467777773 246777787775 74 3688888876421 456788889999988764 57888887
Q ss_pred CCC
Q 025219 148 YGV 150 (256)
Q Consensus 148 ~g~ 150 (256)
.|+
T Consensus 68 ~GG 70 (135)
T 1pdo_A 68 WGG 70 (135)
T ss_dssp TTS
T ss_pred CCC
Confidence 664
No 86
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=44.36 E-value=44 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEec
Q 025219 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
+.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 50 d~~~I~~al~~a~~~~~~DlVitT 73 (195)
T 1di6_A 50 EQAIIEQTLCELVDEMSCHLVLTT 73 (195)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC
Confidence 346778888888876679999998
No 87
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=44.25 E-value=95 Score=27.46 Aligned_cols=87 Identities=13% Similarity=0.134 Sum_probs=55.3
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcc-cc
Q 025219 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFD-KL 120 (256)
Q Consensus 58 gtl~~l~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~-~~ 120 (256)
+.+.++.++- .=++=++++.|+.. +.+--+-.|..+-+..+|+ ..+..++.|+.+|..+ +.
T Consensus 20 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgvp~~Kd~~gs~A 97 (328)
T 1w1z_A 20 AALRNLVQENTLTVNDLVFPLFVMPGTNAVEEVSSMPGSFRFTIDRAVEECKELYDLGI--QGIDLFGIPEQKTEDGSEA 97 (328)
T ss_dssp HHHHHHHCCCCCCGGGEEEEEEEESSSSCEEEETTEEEEEEEEHHHHHHHHHHHHHHTC--CEEEEEECCSSCCSSCGGG
T ss_pred hHHHHHHhcCcCCHHHceeeEEEecCCCCccccCCCCCeeEeCHHHHHHHHHHHHHCCC--CEEEEECCCCCCCcccccc
Confidence 4555665432 12667788888753 1233344455556667899 5677777776655322 34
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
|+++.++..-.+.|++.-||+++..|
T Consensus 98 ~~~~g~v~rair~iK~~~p~l~vitD 123 (328)
T 1w1z_A 98 YNDNGILQQAIRAIKKAVPELCIMTD 123 (328)
T ss_dssp GCTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 67777887777888888899876544
No 88
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=44.25 E-value=1.3e+02 Score=24.69 Aligned_cols=98 Identities=8% Similarity=0.033 Sum_probs=55.8
Q ss_pred HHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025219 62 YLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (256)
Q Consensus 62 ~l~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (256)
.+.+. |++ .+.+++ |........|.+-.+++++..|.+.+...... ..|+.+...+.+.+++++. +
T Consensus 119 ~l~~~~~g~~-~i~~i~-~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~ 187 (305)
T 3g1w_A 119 KMAELLDGEG-EVAVIT-LPNQLNHQERTTGFKETLEAEFPAIEVIAVED---------GRGDSLHSRRVAHQLLEDYPN 187 (305)
T ss_dssp HHHHHTTTCE-EEEEEE-CTTCHHHHHHHHHHHHHHHHHCTTEEEEEEEE---------CTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCc-EEEEEe-CCCcccHHHHHHHHHHHHHhhCCCCEEEEEec---------CCCCHHHHHHHHHHHHHhCCC
Confidence 44555 765 344454 33333456688888999998887322111111 1245566677788888765 5
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC-CceeEEEe
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE-RNIEAWEL 180 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~-~~~~~~e~ 180 (256)
||.|++.+ |.. +..+.++++..+. .++.+.-.
T Consensus 188 ~~ai~~~~--------d~~--a~g~~~al~~~g~~~di~vig~ 220 (305)
T 3g1w_A 188 LAGIFATE--------ANG--GVGVGDAVRLESRAGEIQIISF 220 (305)
T ss_dssp EEEEEESS--------HHH--HHHHHHHHHHTTCTTTSEEEEE
T ss_pred ceEEEECC--------Ccc--hhhHHHHHHhcCCCCCeEEEEe
Confidence 88888862 233 3455566655433 35555543
No 89
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=43.97 E-value=1.3e+02 Score=24.54 Aligned_cols=111 Identities=6% Similarity=0.008 Sum_probs=59.7
Q ss_pred chhhhcchHHHH-HHHHh-CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHH
Q 025219 49 PDDESMFFSPTI-NYLTS-RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSL 126 (256)
Q Consensus 49 PDDE~l~~Ggtl-~~l~~-~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l 126 (256)
+|+... |-.+ ..+.+ .|++-.+++++..........|.+-.+++++..|. .+.+.... . ...|+.+..
T Consensus 107 ~d~~~~--g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~---~~~~~~~~-~----~~~~~~~~~ 176 (303)
T 3d02_A 107 IDNEKF--AAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYP---DMHEVTRR-M----PVAESVDDS 176 (303)
T ss_dssp SCHHHH--HHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCT---TEEESSSC-B----SCTTCHHHH
T ss_pred cCHHHH--HHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHHHHHHHHhhCC---CCEEEEee-c----CCCCCHHHH
Confidence 466542 3333 34445 78865555554332222345677778888887653 23333211 0 113556666
Q ss_pred HHHHHHHHHhc-CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC-CceeEEE
Q 025219 127 AKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE-RNIEAWE 179 (256)
Q Consensus 127 ~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~-~~~~~~e 179 (256)
.+.+.+++++. +||.|++.+ |. .+..+.++++..+. .++.+.-
T Consensus 177 ~~~~~~~l~~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~~dv~vig 221 (303)
T 3d02_A 177 RRTTLDLMKTYPDLKAVVSFG--------SN--GPIGAGRAVKEKRAKNKVAVYG 221 (303)
T ss_dssp HHHHHHHHHHCTTEEEEEESS--------TT--HHHHHHHHHHHTTCTTTCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEeC--------Cc--chhHHHHHHHhcCCCCCeEEEE
Confidence 67778888765 578888873 11 23445566655433 3555553
No 90
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=43.66 E-value=70 Score=28.14 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=36.2
Q ss_pred CCCCCcEEEEecC--ch---hhhcchHHHHHHHHhCCCcEEEEEEeC---CCCCCchHHHHHHHHHHHHHcCC
Q 025219 36 TGDKKNVLLVIAH--PD---DESMFFSPTINYLTSRRHNLHILCMSN---GNADGMGNIRKDELHRACAVLKI 100 (256)
Q Consensus 36 ~~~~~~vLvv~aH--PD---DE~l~~Ggtl~~l~~~G~~V~vv~lT~---G~~~~~~~~R~~E~~~A~~~LGv 100 (256)
+..+.+|-+|+|= .+ .+.+ --.+.+|.+.|.+|.+---+. |-..+..+.|.+|+.+|.+-=.+
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i 79 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENR--RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNV 79 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHH--HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTE
T ss_pred CCCcCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCC
Confidence 4567778888653 22 2332 334667778888875422111 11124578888888888764333
No 91
>3lfh_A Manxa, phosphotransferase system, mannose/fructose-speci component IIA; PTS; 1.80A {Thermoanaerobacter tengcongensis} SCOP: c.54.1.0
Probab=43.36 E-value=82 Score=24.13 Aligned_cols=67 Identities=22% Similarity=0.262 Sum_probs=45.2
Q ss_pred cEEEEEEeCCCCCCchHHHHHHHHHHHHH-cCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C--CCEEEe
Q 025219 69 NLHILCMSNGNADGMGNIRKDELHRACAV-LKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S--IDLIIT 144 (256)
Q Consensus 69 ~V~vv~lT~G~~~~~~~~R~~E~~~A~~~-LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~--Pd~V~t 144 (256)
.+.++.+|-|. =.+++.++++. +|- .+++..++++... +.+++.+.+.+.+++. . -.+++.
T Consensus 3 ~igiii~sHG~-------~A~gl~~~~~~i~G~-~~~v~av~~~~~~-------~~~~~~~~i~~~i~~~~~~~~gvliL 67 (144)
T 3lfh_A 3 EKFVLIITHGD-------FGKGLLSGAEVIIGK-QENVHTVGLNLGD-------NIEVVRKEVEKIIKEKLQEDKEIIIV 67 (144)
T ss_dssp CEEEEEEEETT-------HHHHHHHHHHHHHCC-CSSEEEEEECTTC-------CHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred cceEEEEeCcH-------HHHHHHHHHHHHcCC-CCcEEEEEccCCC-------CHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence 36788888883 24666667666 564 3688888876421 4567888888888877 4 346777
Q ss_pred cCCCCC
Q 025219 145 FDNYGV 150 (256)
Q Consensus 145 ~d~~g~ 150 (256)
.|-.|+
T Consensus 68 tDl~GG 73 (144)
T 3lfh_A 68 VDLFGG 73 (144)
T ss_dssp ESSSSS
T ss_pred EeCCCC
Confidence 776663
No 92
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=43.36 E-value=1.3e+02 Score=24.37 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=53.9
Q ss_pred HHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-
Q 025219 62 YLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC- 137 (256)
Q Consensus 62 ~l~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~- 137 (256)
.+.+ .|++ .+++++..........|.+-.+++++.. |+ .+.+..... ...|+.+...+.+.+++++.
T Consensus 117 ~l~~~~~g~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~ 187 (291)
T 3l49_A 117 QMVADLGGKG-NVLVFNGFYSVPVCKIRYDQMKYVLEAFPDV-----KIIEPELRD---VIPNTIQSAYSNVTDMLTKYP 187 (291)
T ss_dssp HHHHHHTTCE-EEEEECSCTTSHHHHHHHHHHHHHHHTCTTE-----EECSSCBCC---CSSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCc-eEEEEeCCCCCchHHHHHHHHHHHHHHCCCC-----EEEeeeccC---CCCCCHHHHHHHHHHHHHhCC
Confidence 4455 6764 3444432222223456778888888877 44 222211000 01234566677788888876
Q ss_pred ---CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEEE
Q 025219 138 ---SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (256)
Q Consensus 138 ---~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~e 179 (256)
+||.||+.+ |. .+..+.++++..+.+++.+.-
T Consensus 188 ~~~~~~ai~~~~--------d~--~a~g~~~al~~~g~~di~vvg 222 (291)
T 3l49_A 188 NEGDVGAIWACW--------DV--PMIGATQALQAAGRTDIRTYG 222 (291)
T ss_dssp STTSCCEEEESS--------HH--HHHHHHHHHHHTTCCSCEEEE
T ss_pred CcCCcCEEEECC--------Cc--hHHHHHHHHHHcCCCCeEEEE
Confidence 589998862 22 344556666654433555543
No 93
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=43.27 E-value=1.1e+02 Score=26.18 Aligned_cols=95 Identities=11% Similarity=0.055 Sum_probs=50.4
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd 140 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++...+ . . ..|+.+.-.+.+.+++++. +||
T Consensus 173 ~L~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~~~-~--~--------~~~~~~~~~~~~~~ll~~~~~~~ 240 (349)
T 1jye_A 173 HLVALGHQ-QIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAE-R--E--------GDWSAMSGFQQTMQMLNEGIVPT 240 (349)
T ss_dssp HHHHHTCC-SEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEE-E--E--------CCSSHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHCCCC-EEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcccc-c--c--------CCCChHHHHHHHHHHHhCCCCCC
Confidence 45566764 23333322111234567788888888888843211 1 0 1234444455666667653 689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
.||+.+ |. .+..+.++++..+ ++++.+.
T Consensus 241 ai~~~n--------D~--~A~g~~~al~~~G~~vP~disvv 271 (349)
T 1jye_A 241 AMLVAN--------DQ--MALGAMRAITESGLRVGADISVV 271 (349)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCCBTTTBEEE
T ss_pred EEEECC--------hH--HHHHHHHHHHHcCCCCCCcEEEE
Confidence 999872 33 3344566665543 2455443
No 94
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=41.95 E-value=56 Score=25.88 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCCCCC-CCchHHHHHHHHHHH
Q 025219 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWSY 166 (256)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~v~~av~~a 166 (256)
+.+.+.+.|.+.+.+.+.|+|+|. .|.+ ++-|+ +.+++.++
T Consensus 52 d~~~I~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~ea~~~~ 93 (178)
T 2pbq_A 52 ERDLIEKTLIELADEKGCSLILTT--GGTGPAPRDV--TPEATEAV 93 (178)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCCc--hHHHHHHH
Confidence 346778888888765578999998 3322 44454 34444443
No 95
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=41.69 E-value=76 Score=24.80 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCCCCcEEEc-cCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 90 ELHRACAVLKIPLEQVKVL-DLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l-~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
-+.+.++.+|+ ++... -.+| +.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 35 ~l~~~L~~~G~---~v~~~~iv~D---------d~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 35 LLHELLKEAGH---KVTSYEIVKD---------DKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHHTC---EEEEEEEECS---------SHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHHCCC---eEeEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEEc
Confidence 35556677798 23222 2233 346778888887765578999998
No 96
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=41.45 E-value=88 Score=27.34 Aligned_cols=87 Identities=13% Similarity=0.123 Sum_probs=53.8
Q ss_pred HHHHHhCC--CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025219 60 INYLTSRR--HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (256)
Q Consensus 60 l~~l~~~G--~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (256)
++++.++| ....+.++--|+. ....-.|.++ ++|+.+|+ +.....+|.. -+.+++.+.|.++=++
T Consensus 24 v~~l~~~~~~~~P~LavilvG~dpaS~~Yv~~k~--k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~D 91 (301)
T 1a4i_A 24 VTQLKEQVPGFTPRLAILQVGNRDDSNLYINVKL--KAAEEIGI---KATHIKLPRT-------TTESEVMKYITSLNED 91 (301)
T ss_dssp HHHHHHHSTTCCCEEEEEEESCCHHHHHHHHHHH--HHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCCEEEEEEeCCChhHHHHHHHHH--HHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCC
Confidence 44555554 4455555555543 3344455554 88999999 4555566541 1457888888888777
Q ss_pred cCCCEEEecCCCCCCCC--chHHHHH
Q 025219 137 CSIDLIITFDNYGVSGH--CNHRDVH 160 (256)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H--~DH~~v~ 160 (256)
-+.|=|+..=| .-.| .|-..+-
T Consensus 92 ~~V~GIlvqlP--LP~~~~id~~~i~ 115 (301)
T 1a4i_A 92 STVHGFLVQLP--LDSENSINTEEVI 115 (301)
T ss_dssp TTCCEEEECSS--CCCSSCCCHHHHH
T ss_pred CCCcEEEEecc--CCCCCccCHHHHH
Confidence 77777888844 4466 6666543
No 97
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=41.43 E-value=25 Score=28.50 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=26.9
Q ss_pred CcEEEEecCchhhh-cchHHHHHHHHhCCCcEEEEEEeC
Q 025219 40 KNVLLVIAHPDDES-MFFSPTINYLTSRRHNLHILCMSN 77 (256)
Q Consensus 40 ~~vLvv~aHPDDE~-l~~Ggtl~~l~~~G~~V~vv~lT~ 77 (256)
+++|+|.+||+-+. -.+...+..+.+.|.+|.++-+.+
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~ 40 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYA 40 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchh
Confidence 57999999999774 223334445556788999888754
No 98
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A 4afr_A
Probab=40.84 E-value=68 Score=28.85 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC-CEEEec
Q 025219 90 ELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI-DLIITF 145 (256)
Q Consensus 90 E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P-d~V~t~ 145 (256)
.+.+.++.+|.+.+++.+|-..+...+....-..+.+.+.+..++++.+| |+++.|
T Consensus 118 ~m~~~L~~~GF~~~~i~~L~D~~~~p~~~~~pTr~nI~~aL~~L~~~a~pgD~l~fy 174 (367)
T 4af8_A 118 QMLATLQKRGLPINEAVILVDEDNFPGRTDQPTRDNIVRYMAWLVKDAKPGDVLFFH 174 (367)
T ss_dssp HHHHHHHHTTCCCSEEEEEECCTTCTTCCBCCCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred HHHHHHHHcCCCchheEEecccccccccccCCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 34556666899777777764332110111122457888899999998887 555544
No 99
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=40.73 E-value=63 Score=27.42 Aligned_cols=97 Identities=11% Similarity=0.097 Sum_probs=53.7
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (256)
.|.+.|++ .+.+++..........|.+-.+++++..|++.....+. . ..|+.+...+.+.+++++ -+||
T Consensus 171 ~L~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~---~------~~~~~~~~~~~~~~ll~~~~~~~ 240 (340)
T 1qpz_A 171 YLIERGHR-EIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIV---Q------GDFEPESGYRAMQQILSQPHRPT 240 (340)
T ss_dssp HHHHHTCC-CEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBC---C------CCSSHHHHHHHHHHHHTSSSCCS
T ss_pred HHHHCCCC-EEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheE---e------CCCCHHHHHHHHHHHHcCCCCCc
Confidence 45667875 33444322222235678888899999988742211000 0 124555556667777765 4689
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
.||+.+ |.. +..+.++++..+ ++++.+.
T Consensus 241 ai~~~n--------d~~--A~g~~~al~~~G~~vP~disvi 271 (340)
T 1qpz_A 241 AVFCGG--------DIM--AMGALCAADEMGLRVPQDVSLI 271 (340)
T ss_dssp EEEESS--------HHH--HHHHHHHHHHTTCCTTTTCEEE
T ss_pred EEEECC--------HHH--HHHHHHHHHHcCCCCCCCeEEE
Confidence 999862 333 334566665543 2455554
No 100
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=40.64 E-value=54 Score=27.69 Aligned_cols=89 Identities=15% Similarity=0.020 Sum_probs=49.1
Q ss_pred HHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCc-EEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025219 62 YLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQ-VKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~-~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (256)
.|.+.|++- +.+++... .......|.+-.+++++..|++... ..+. ..|+.+...+.+.+++++. +
T Consensus 171 ~L~~~G~~~-I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~----------~~~~~~~~~~~~~~ll~~~~~ 239 (332)
T 2hsg_A 171 SLIDSGHKN-IAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVE----------GDYTYDSGIEAVEKLLEEDEK 239 (332)
T ss_dssp HHHTTTCSC-EEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEE----------CCSSHHHHHHHHHHHHHSSSC
T ss_pred HHHHCCCCE-EEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEe----------CCCCHHHHHHHHHHHHcCCCC
Confidence 556678752 33343321 1122456888888888888874321 1111 1134455566677777754 6
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS 171 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~ 171 (256)
||.||+.+ |.. +..+.++++..+
T Consensus 240 ~~ai~~~n--------d~~--A~g~~~al~~~G 262 (332)
T 2hsg_A 240 PTAIFVGT--------DEM--ALGVIHGAQDRG 262 (332)
T ss_dssp CSEEEESS--------HHH--HHHHHHHHHHTT
T ss_pred CeEEEECC--------hHH--HHHHHHHHHHcC
Confidence 89999862 333 334566665543
No 101
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=40.45 E-value=95 Score=25.34 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=53.7
Q ss_pred HHHhCCC---cEEEEEEeC-CCCCC-chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025219 62 YLTSRRH---NLHILCMSN-GNADG-MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (256)
Q Consensus 62 ~l~~~G~---~V~vv~lT~-G~~~~-~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (256)
.+.+.|+ +|.++.... |..+. ....|.+-.+++++..|.+.+ .......+ |+.+...+.+.+++++
T Consensus 127 ~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~~--------~~~~~~~~~~~~~l~~ 197 (304)
T 3gbv_A 127 MLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPACN-ILELNLHA--------DLNIEDSRMLDDFFRE 197 (304)
T ss_dssp HHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTSE-EEEEEEES--------SCSSCHHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCcE-EEEeeecC--------CCHHHHHHHHHHHHHh
Confidence 4556676 344443322 43332 356788889999999988432 22111111 2223345566777776
Q ss_pred c-CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEEEe
Q 025219 137 C-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWEL 180 (256)
Q Consensus 137 ~-~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~e~ 180 (256)
. +|+.||+.+ |. + ..+.++++..+.+++.+.-.
T Consensus 198 ~~~~~ai~~~~--------d~-a--~g~~~al~~~g~~di~vig~ 231 (304)
T 3gbv_A 198 HPDVKHGITFN--------SK-V--YIIGEYLQQRRKSDFSLIGY 231 (304)
T ss_dssp CTTCCEEEESS--------SC-T--HHHHHHHHHTTCCSCEEEEE
T ss_pred CCCeEEEEEcC--------cc-h--HHHHHHHHHcCCCCcEEEEe
Confidence 5 689999873 12 2 23555555444355655543
No 102
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=40.42 E-value=84 Score=27.45 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=40.4
Q ss_pred CCCCCcEEEEecC-----chhhhcchHHHHHHHHhCCCcEEEEEEe-C--CCCCCchHHHHHHHHHHHHHcCC
Q 025219 36 TGDKKNVLLVIAH-----PDDESMFFSPTINYLTSRRHNLHILCMS-N--GNADGMGNIRKDELHRACAVLKI 100 (256)
Q Consensus 36 ~~~~~~vLvv~aH-----PDDE~l~~Ggtl~~l~~~G~~V~vv~lT-~--G~~~~~~~~R~~E~~~A~~~LGv 100 (256)
+.++.+|-+|+|= ++++.+ --.+.+|.+.|.+|.+---. . +-..+..+.|.+|+.+|.+-=.+
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i 79 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQV--EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSV 79 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHH--HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTE
T ss_pred CCCCCEEEEEeCCCCcCccCHHHH--HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCC
Confidence 5678889999763 344544 33478888999987542111 1 11235678899999988765444
No 103
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.92 E-value=74 Score=26.15 Aligned_cols=73 Identities=10% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SI 139 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~P 139 (256)
..|.+.|++- +.+++..........|.+-.+++++..|++ ...+.. . .|+.+...+.+.+++++. +|
T Consensus 131 ~~L~~~G~~~-I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~--~~~~~~-~--------~~~~~~~~~~~~~~l~~~~~~ 198 (293)
T 2iks_A 131 EELRKFPAET-VLYLGALPELSVSFLREQGFRTAWKDDPRE--VHFLYA-N--------SYEREAAAQLFEKWLETHPMP 198 (293)
T ss_dssp HHHHTSCCSS-EEEEEECTTSHHHHHHHHHHHHHHTTCCCC--EEEEEE-S--------SSCHHHHHHHHHHHTTTSCCC
T ss_pred HHHHHCCCCE-EEEEecCcccccHHHHHHHHHHHHHHcCCC--ccEEEc-C--------CCChhhHHHHHHHHHhcCCCC
Confidence 3556778652 233332211223467888889999988872 111111 1 134455556677777654 58
Q ss_pred CEEEec
Q 025219 140 DLIITF 145 (256)
Q Consensus 140 d~V~t~ 145 (256)
|.||+.
T Consensus 199 ~ai~~~ 204 (293)
T 2iks_A 199 QALFTT 204 (293)
T ss_dssp SEEEES
T ss_pred CEEEEC
Confidence 999987
No 104
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=39.48 E-value=1e+02 Score=25.35 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=27.8
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.|+..|+| +..++..++. +.++--+.+.+.+++++||+|++..
T Consensus 48 ~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 91 (215)
T 3tqr_A 48 KRAQQADIP---THIIPHEEFP-------SRTDFESTLQKTIDHYDPKLIVLAG 91 (215)
T ss_dssp HHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHTTCCSEEEESS
T ss_pred HHHHHcCCC---EEEeCccccC-------chhHhHHHHHHHHHhcCCCEEEEcc
Confidence 456778994 4445433221 2233345677888999999999874
No 105
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=39.31 E-value=96 Score=27.51 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=56.0
Q ss_pred CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHH-HHHcCCCCCcEEEccCCCCCCCcc
Q 025219 40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRA-CAVLKIPLEQVKVLDLVDFQDGFD 118 (256)
Q Consensus 40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A-~~~LGv~~~~~~~l~~~d~~dg~~ 118 (256)
+-+.++++-|+=.- +.+.+..+.+. .+. .++.|.. -+..++.+. .+.+|++.-+ +.|+-.. + +..
T Consensus 11 ~~~~v~GtRpe~~k--~~p~~~~l~~~-~~~-~~~~tgq-------h~~~~~~~~~~~~~~i~~~~-~~l~~~~-~-~~~ 76 (385)
T 4hwg_A 11 KVMTIVGTRPELIK--LCCVISEFDKH-TKH-ILVHTGQ-------NYAYELNQVFFDDMGIRKPD-YFLEVAA-D-NTA 76 (385)
T ss_dssp EEEEEECSHHHHHH--HHHHHHHHHHH-SEE-EEEECSC-------HHHHHHTHHHHC-CCCCCCS-EECCCCC-C-CSH
T ss_pred heeEEEEcCHhHHH--HHHHHHHHHhc-CCE-EEEEeCC-------CCChhHHHHHHhhCCCCCCc-eecCCCC-C-CHH
Confidence 44667788886554 68889888876 443 4454543 254556554 4678884223 3465421 1 111
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
. ....+...+.+++++.+||+|++++
T Consensus 77 ~--~~~~~~~~l~~~l~~~kPD~Vlv~g 102 (385)
T 4hwg_A 77 K--SIGLVIEKVDEVLEKEKPDAVLFYG 102 (385)
T ss_dssp H--HHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred H--HHHHHHHHHHHHHHhcCCcEEEEEC
Confidence 1 1235677789999999999999983
No 106
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=37.67 E-value=1.2e+02 Score=24.63 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh--cCCCEEEecCCCCCCCCchHHHHHH
Q 025219 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN--CSIDLIITFDNYGVSGHCNHRDVHH 161 (256)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~--~~Pd~V~t~d~~g~d~H~DH~~v~~ 161 (256)
...|.+-.+++++..|++. .+.. ..|+.+...+.+.+++++ -+||.||+.+ |. .+.
T Consensus 133 ~~~R~~gf~~~l~~~g~~~---~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~--------d~--~a~ 190 (277)
T 3cs3_A 133 SQERLAVSTRELTRFGIPY---EIIQ---------GDFTEPSGYAAAKKILSQPQTEPVDVFAFN--------DE--MAI 190 (277)
T ss_dssp HHHHHHHHHHHHHHTTCCE---EEEE---------CCSSHHHHHHHHHHHTTSCCCSSEEEEESS--------HH--HHH
T ss_pred HHHHHHHHHHHHHHcCCCe---eEEe---------CCCChhHHHHHHHHHHhcCCCCCcEEEEcC--------hH--HHH
Confidence 4567777888888888732 2111 113445555667777765 3688888862 22 344
Q ss_pred HHHHHHhhcC
Q 025219 162 GIWSYLNGTS 171 (256)
Q Consensus 162 av~~a~~~~~ 171 (256)
.+.++++..+
T Consensus 191 g~~~al~~~g 200 (277)
T 3cs3_A 191 GVYKYVAETN 200 (277)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHHHcC
Confidence 4566665543
No 107
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=37.66 E-value=50 Score=28.74 Aligned_cols=82 Identities=21% Similarity=0.238 Sum_probs=44.9
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCcccc
Q 025219 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120 (256)
Q Consensus 41 ~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~ 120 (256)
|+++++.+ + +.+..|..+.++|++|. .++|+-+... ++.......+.|+.+|+| +...+ +.
T Consensus 2 rivf~gt~---~--fa~~~L~~L~~~~~~i~-~Vvt~~d~~~-g~~~~~~v~~~A~~~gIp---v~~~~--~~------- 62 (305)
T 2bln_A 2 KTVVFAYH---D--MGCLGIEALLAAGYEIS-AIFTHTDNPG-EKAFYGSVARLAAERGIP---VYAPD--NV------- 62 (305)
T ss_dssp EEEEEECH---H--HHHHHHHHHHHTTCEEE-EEECCCC-------CCCCHHHHHHHHTCC---EECCS--CC-------
T ss_pred EEEEEEcC---H--HHHHHHHHHHHCCCcEE-EEEcCCCCCC-CCcCccHHHHHHHHcCCC---EECCC--cC-------
Confidence 56666543 1 45677888889999875 4456643210 111112245567778994 22211 11
Q ss_pred CChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 121 WNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 121 ~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..++ +.+.+++.+||++++..
T Consensus 63 -~~~~----~~~~l~~~~~Dliv~~~ 83 (305)
T 2bln_A 63 -NHPL----WVERIAQLSPDVIFSFY 83 (305)
T ss_dssp -CSHH----HHHHHHHTCCSEEEEES
T ss_pred -CcHH----HHHHHHhcCCCEEEEec
Confidence 1122 44567788999998864
No 108
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.65 E-value=94 Score=25.25 Aligned_cols=74 Identities=18% Similarity=0.126 Sum_probs=39.0
Q ss_pred HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCCC
Q 025219 62 YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSID 140 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~Pd 140 (256)
.+.+.|++= +.+++..........|.+-..++++..|++........ ..|+.+...+.+.+++++ -+||
T Consensus 133 ~l~~~G~~~-I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~ 202 (296)
T 3brq_A 133 ELINAGHQE-IAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIAN---------GKWTPASGAEGVEMLLERGAKFS 202 (296)
T ss_dssp HHHHTTCCS-EEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEEC---------CCSSHHHHHHHHHHHHTC--CCS
T ss_pred HHHHCCCce-EEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEe---------CCCChhHHHHHHHHHHhCCCCCC
Confidence 445667542 23333221122345677778888888887422110110 123445555666777764 4689
Q ss_pred EEEec
Q 025219 141 LIITF 145 (256)
Q Consensus 141 ~V~t~ 145 (256)
.||+.
T Consensus 203 ai~~~ 207 (296)
T 3brq_A 203 ALVAS 207 (296)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99886
No 109
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A*
Probab=36.86 E-value=29 Score=31.34 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=20.2
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCCc
Q 025219 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (256)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (256)
+.+.+..++++++||+|+.. -|.|.|.
T Consensus 235 ~~~~l~p~l~~F~PdlIvvs--aG~Da~~ 261 (375)
T 1c3p_A 235 LEKSLEIVKEVFEPEVYLLQ--LGTDPLL 261 (375)
T ss_dssp HHHHHHHHHHHCCCSEEEEE--CCSTTBT
T ss_pred HHHHHHHHHHHhCCCEEEEE--CCccccC
Confidence 34456678899999999987 6766554
No 110
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=36.79 E-value=58 Score=26.86 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=51.0
Q ss_pred HHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-cCC
Q 025219 62 YLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-CSI 139 (256)
Q Consensus 62 ~l~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~~P 139 (256)
.|.+.|++- +.+++... .......|.+-.+++++..|++.....+.. ..|+.+...+.+.+++++ -+|
T Consensus 127 ~L~~~G~~~-I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~ 196 (289)
T 2fep_A 127 LLVDKGHTD-IAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAE---------GDYTYDSGLEALQHLMSLDKKP 196 (289)
T ss_dssp HHHHTTCSS-EEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEE---------CCSCHHHHHHHHHHHTTSSSCC
T ss_pred HHHHCCCCe-EEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEee---------CCCCHHHHHHHHHHHHcCCCCC
Confidence 455677642 33333221 112245677788888888887432110110 123455556667777765 368
Q ss_pred CEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 140 DLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 140 d~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
|.||+.+ |. .+..+.++++..+ ++++.+.
T Consensus 197 ~ai~~~~--------d~--~A~g~~~al~~~G~~vP~di~vv 228 (289)
T 2fep_A 197 TAILSAT--------DE--MALGIIHAAQDQGLSIPEDLDII 228 (289)
T ss_dssp SEEEESS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CEEEECC--------HH--HHHHHHHHHHHcCCCCCCCeEEE
Confidence 9998862 22 3344566665443 2455554
No 111
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=36.47 E-value=42 Score=28.28 Aligned_cols=75 Identities=12% Similarity=0.095 Sum_probs=38.8
Q ss_pred HHHHHHhCCCcEEEEEEeCCCC-CCc--hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHH
Q 025219 59 TINYLTSRRHNLHILCMSNGNA-DGM--GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV 135 (256)
Q Consensus 59 tl~~l~~~G~~V~vv~lT~G~~-~~~--~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~ 135 (256)
++..+.++|++|..+..+.+.. ++. -....+-+++.|+.||+| ++..+.+... .++ .+.+.+.++
T Consensus 20 al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIp---l~~v~~~g~~--------~~e-~e~l~~~l~ 87 (237)
T 3rjz_A 20 ALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIP---LVKGFTQGEK--------EKE-VEDLKRVLS 87 (237)
T ss_dssp HHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCC---EEEEEC--------------C-HHHHHHHHT
T ss_pred HHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCC---EEEEECCCCc--------hHH-HHHHHHHHH
Confidence 3556678999988776554432 110 001112345578999994 5566655310 111 345556666
Q ss_pred hcCCCEEEec
Q 025219 136 NCSIDLIITF 145 (256)
Q Consensus 136 ~~~Pd~V~t~ 145 (256)
+...+.|++=
T Consensus 88 ~~~i~~vv~G 97 (237)
T 3rjz_A 88 GLKIQGIVAG 97 (237)
T ss_dssp TSCCSEEECC
T ss_pred hcCCcEEEEC
Confidence 6667776653
No 112
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=36.14 E-value=1.4e+02 Score=24.40 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=50.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
.++|++|+.+|=- .-|-|-.++ +++++|++|.++.-+ +...+|..+.++.+|-+ +..++.. |..
T Consensus 4 l~gK~alVTGaa~---~~GIG~aiA~~la~~Ga~Vvi~~r~--------~~~~~~~~~~~~~~~~~--~~~~~~~-Dv~- 68 (256)
T 4fs3_A 4 LENKTYVIMGIAN---KRSIAFGVAKVLDQLGAKLVFTYRK--------ERSRKELEKLLEQLNQP--EAHLYQI-DVQ- 68 (256)
T ss_dssp CTTCEEEEECCCS---TTCHHHHHHHHHHHTTCEEEEEESS--------GGGHHHHHHHHGGGTCS--SCEEEEC-CTT-
T ss_pred CCCCEEEEECCCC---CchHHHHHHHHHHHCCCEEEEEECC--------HHHHHHHHHHHHhcCCC--cEEEEEc-cCC-
Confidence 3567788877532 124555555 577899987655421 23445666666667652 3333221 211
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+++.+.+.++.+++ ++|+++-.
T Consensus 69 ------~~~~v~~~~~~~~~~~G~iD~lvnn 93 (256)
T 4fs3_A 69 ------SDEEVINGFEQIGKDVGNIDGVYHS 93 (256)
T ss_dssp ------CHHHHHHHHHHHHHHHCCCSEEEEC
T ss_pred ------CHHHHHHHHHHHHHHhCCCCEEEec
Confidence 3456666677777665 57887643
No 113
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=35.76 E-value=83 Score=27.31 Aligned_cols=86 Identities=12% Similarity=0.143 Sum_probs=52.4
Q ss_pred HHHHHhCC-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025219 60 INYLTSRR-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (256)
Q Consensus 60 l~~l~~~G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (256)
+.++.++| ....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++=++-
T Consensus 23 v~~l~~~~~~~P~LavilvG~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~D~ 90 (288)
T 1b0a_A 23 VQARIAAGLRAPGLAVVLVGSNPASQIYVASK--RKACEEVGF---VSRSYDLPET-------TSEAELLELIDTLNADN 90 (288)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EECCEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEeCCChhHHHHHHHH--HHHHHHcCC---EEEEEECCCC-------CCHHHHHHHHHHhcCCC
Confidence 45566666 4455555555543 333445554 489999999 3334444431 14577888888777766
Q ss_pred CCCEEEecCCCCCCCCchHHHH
Q 025219 138 SIDLIITFDNYGVSGHCNHRDV 159 (256)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~v 159 (256)
+.|=|+..= +.-.|.|-..+
T Consensus 91 ~V~GIlvql--PLP~~id~~~i 110 (288)
T 1b0a_A 91 TIDGILVQL--PLPAGIDNVKV 110 (288)
T ss_dssp TCCEEEECS--SCCTTSCHHHH
T ss_pred CCcEEEEeC--CCCCCCCHHHH
Confidence 677788884 44467776654
No 114
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=35.42 E-value=2.6e+02 Score=25.41 Aligned_cols=81 Identities=19% Similarity=0.095 Sum_probs=46.7
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcC-CCCCcEEEccCCCCCCC
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLK-IPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LG-v~~~~~~~l~~~d~~dg 116 (256)
.++|+.+.+- ||-. + +....+.+.|.++..+..+.++ +.-++++++.++.+| . ...++.-+|
T Consensus 311 ~gkrv~i~~~-~~~~-~---~l~~~L~elG~~vv~v~~~~~~-----~~~~~~~~~ll~~~~~~---~~~v~~~~d---- 373 (458)
T 1mio_B 311 QGKKVALLGD-PDEI-I---ALSKFIIELGAIPKYVVTGTPG-----MKFQKEIDAMLAEAGIE---GSKVKVEGD---- 373 (458)
T ss_dssp TTCEEEEEEC-HHHH-H---HHHHHHHTTTCEEEEEEESSCC-----HHHHHHHHHHHHTTTCC---SCEEEESCB----
T ss_pred CCCEEEEEcC-chHH-H---HHHHHHHHCCCEEEEEEeCCCC-----HHHHHHHHHHHHhcCCC---CCEEEECCC----
Confidence 5667766653 5433 3 4444556889998887776652 222344444455555 3 222332222
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
...+.+.+++.+||+++..
T Consensus 374 ----------~~~l~~~i~~~~pDl~ig~ 392 (458)
T 1mio_B 374 ----------FFDVHQWIKNEGVDLLISN 392 (458)
T ss_dssp ----------HHHHHHHHHHSCCSEEEES
T ss_pred ----------HHHHHHHHHhcCCCEEEeC
Confidence 1236777888899999976
No 115
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=35.21 E-value=1.3e+02 Score=26.00 Aligned_cols=88 Identities=16% Similarity=0.267 Sum_probs=51.6
Q ss_pred HHHHHhC-CCcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025219 60 INYLTSR-RHNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (256)
Q Consensus 60 l~~l~~~-G~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (256)
++++.++ |....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++-.+-
T Consensus 24 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~ 91 (285)
T 3l07_A 24 VQEYKHHTAITPKLVAIIVGNDPASKTYVASK--EKACAQVGI---DSQVITLPEH-------TTESELLELIDQLNNDS 91 (285)
T ss_dssp HHHHHHHHCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHHTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEECCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 3444444 44555555555543 233344554 489999999 4556666541 14577777777776666
Q ss_pred CCCEEEecCCCCCCCCchHHHHHH
Q 025219 138 SIDLIITFDNYGVSGHCNHRDVHH 161 (256)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~v~~ 161 (256)
+.+=|+..=| .-.|.|-..+-+
T Consensus 92 ~v~GIlvqlP--lp~~id~~~v~~ 113 (285)
T 3l07_A 92 SVHAILVQLP--LPAHINKNNVIY 113 (285)
T ss_dssp TCCEEEECSS--CCTTSCHHHHHH
T ss_pred CCcEEEEcCC--CCCCcCHHHHHh
Confidence 6677887733 335666555433
No 116
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=35.20 E-value=62 Score=29.07 Aligned_cols=60 Identities=8% Similarity=0.073 Sum_probs=33.9
Q ss_pred CCCCCcEEEEecCc-----hhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHH
Q 025219 36 TGDKKNVLLVIAHP-----DDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAV 97 (256)
Q Consensus 36 ~~~~~~vLvv~aHP-----DDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~ 97 (256)
+..+.+|-+|+|=- +.+.+ --.+.+|.+.|.+|.+--.+... ..+..+.|.+|+.+|.+-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~D 107 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRF--FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYN 107 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHH--HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTC
T ss_pred CCCcCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhC
Confidence 45677788887631 22222 33466777788876543222111 134567788888877653
No 117
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=34.85 E-value=2.8e+02 Score=25.79 Aligned_cols=84 Identities=13% Similarity=0.024 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
..++|+.+.+ -||= . -|....|.+.|.+|..+..+.++ +.-++++++.++.+..+. ...++.-+|
T Consensus 358 l~Gkrv~i~g-d~~~-~---~~la~~L~ElGm~vv~v~~~~~~-----~~~~~~~~~ll~~~~~~~-~~~v~~~~d---- 422 (519)
T 1qgu_B 358 LHGKKFGLYG-DPDF-V---MGLTRFLLELGCEPTVILSHNAN-----KRWQKAMNKMLDASPYGR-DSEVFINCD---- 422 (519)
T ss_dssp HTTCEEEEES-CHHH-H---HHHHHHHHHTTCEEEEEEETTCC-----HHHHHHHHHHHHHSTTCT-TCEEEESCC----
T ss_pred cCCCEEEEEC-CchH-H---HHHHHHHHHCCCEEEEEEeCCCC-----HHHHHHHHHHHHhcCCCC-CCEEEECCC----
Confidence 4567888775 3432 2 34455566899999887777652 222444555555563311 233343222
Q ss_pred ccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 117 FDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
. ..+.+.+++.+||++++.
T Consensus 423 ------~----~~l~~~i~~~~pDLiig~ 441 (519)
T 1qgu_B 423 ------L----WHFRSLMFTRQPDFMIGN 441 (519)
T ss_dssp ------H----HHHHHHHHHHCCSEEEEC
T ss_pred ------H----HHHHHHHhhcCCCEEEEC
Confidence 1 235666777799999976
No 118
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=34.22 E-value=1.8e+02 Score=23.36 Aligned_cols=74 Identities=9% Similarity=0.150 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEecCCCCCCCCchHHHHHHH
Q 025219 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIITFDNYGVSGHCNHRDVHHG 162 (256)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~d~~g~d~H~DH~~v~~a 162 (256)
...|.+-.+++++..|++ +..... ..|+.+.-.+.+.+++++. +|+.||+.+ | ..+..
T Consensus 138 ~~~R~~Gf~~al~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~ai~~~n--------D--~~A~g 196 (271)
T 2dri_A 138 ARERGEGFQQAVAAHKFN---VLASQP--------ADFDRIKGLNVMQNLLTAHPDVQAVFAQN--------D--EMALG 196 (271)
T ss_dssp HHHHHHHHHHHHHHHTCE---EEEEEE--------CTTCHHHHHHHHHHHHHHCTTCCEEEESS--------H--HHHHH
T ss_pred HhHHHHHHHHHHhcCCCE---EEEecC--------CCCCHHHHHHHHHHHHHhCCCccEEEECC--------C--cHHHH
Confidence 467888889999888872 211100 1244555566677777654 589999873 3 33456
Q ss_pred HHHHHhhcCCCceeEE
Q 025219 163 IWSYLNGTSERNIEAW 178 (256)
Q Consensus 163 v~~a~~~~~~~~~~~~ 178 (256)
+.+|++..+..++.+.
T Consensus 197 ~~~al~~~g~~dv~vv 212 (271)
T 2dri_A 197 ALRALQTAGKSDVMVV 212 (271)
T ss_dssp HHHHHHHHTCCSCEEE
T ss_pred HHHHHHHcCCCCcEEE
Confidence 6667765544455543
No 119
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=34.04 E-value=2e+02 Score=24.35 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSID 140 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd 140 (256)
..|.+.|++ .+.+++..........|.+-.+++++..|++. .+.+ .. .|+.+...+.+.+++++..|
T Consensus 177 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~-~~v~--~~--------~~~~~~~~~~~~~ll~~~~~- 243 (348)
T 3bil_A 177 ELLAHNNAL-PIGYLSGPMDTSTGRERLEDFKAACANSKIGE-QLVF--LG--------GYEQSVGFEGATKLLDQGAK- 243 (348)
T ss_dssp HHHHHTTCC-SEEEECCCTTSHHHHHHHHHHHHHHHHTTCCC-CEEE--CC--------CSSHHHHHHHHHHHHHTTCS-
T ss_pred HHHHHCCCC-eEEEEeCCCCCccHHHHHHHHHHHHHHcCcCc-cEEE--cC--------CCCHHHHHHHHHHHHcCCCC-
Confidence 355667765 23334322112235678888899999988732 2222 11 13445556667777776558
Q ss_pred EEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEE
Q 025219 141 LIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWE 179 (256)
Q Consensus 141 ~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e 179 (256)
.||+.+ |. .+..+.++++..+ ++++.+.-
T Consensus 244 ai~~~n--------D~--~A~g~~~al~~~G~~vP~disvvG 275 (348)
T 3bil_A 244 TLFAGD--------SM--MTIGVIEACHKAGLVIGKDVSVIG 275 (348)
T ss_dssp EEEESS--------HH--HHHHHHHHHHHTTCCBTTTBEEEE
T ss_pred EEEEcC--------hH--HHHHHHHHHHHcCCCCCCCeEEEE
Confidence 888762 32 3444566665443 24555543
No 120
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=33.77 E-value=2.8e+02 Score=25.86 Aligned_cols=82 Identities=18% Similarity=0.054 Sum_probs=46.5
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc--CCCCCcEEEccCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVL--KIPLEQVKVLDLVDFQ 114 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L--Gv~~~~~~~l~~~d~~ 114 (256)
..++|+.+. +-||=. -|....+.+.|.+|..+..++++ +.-.+++++.++.+ |. ...++.-+|
T Consensus 362 l~GKrvaI~-gd~~~~----~~la~fL~elGm~vv~v~~~~~~-----~~~~~~~~~~l~~~~~~~---~~~v~~~~D-- 426 (523)
T 3u7q_B 362 LHGKRFALW-GDPDFV----MGLVKFLLELGCEPVHILCHNGN-----KRWKKAVDAILAASPYGK---NATVYIGKD-- 426 (523)
T ss_dssp HTTCEEEEE-CSHHHH----HHHHHHHHHTTCEEEEEEETTCC-----HHHHHHHHHHHHTSGGGT---TCEEEESCC--
T ss_pred cCCCEEEEE-CCchHH----HHHHHHHHHcCCEEEEEEeCCCC-----HHHHHHHHHHHhhccCCC---CcEEEECCC--
Confidence 456787777 455433 24555566899998777766553 12233344444432 22 123333222
Q ss_pred CCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 115 DGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 115 dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
. ..+.+.+++.+||++++.
T Consensus 427 --------~----~~l~~~i~~~~pDLlig~ 445 (523)
T 3u7q_B 427 --------L----WHLRSLVFTDKPDFMIGN 445 (523)
T ss_dssp --------H----HHHHHHHHHTCCSEEEEC
T ss_pred --------H----HHHHHHHHhcCCCEEEEC
Confidence 1 235667788899999986
No 121
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=33.71 E-value=2.1e+02 Score=24.73 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=51.0
Q ss_pred HHHHHhCC-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc
Q 025219 60 INYLTSRR-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC 137 (256)
Q Consensus 60 l~~l~~~G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~ 137 (256)
++++.++| ....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++-++-
T Consensus 25 v~~l~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d~ 92 (286)
T 4a5o_A 25 VTERRQQGLRVPGLAVILVGTDPASQVYVAHK--RKDCEEVGF---LSQAYDLPAE-------TSQDDLLALIDRLNDDP 92 (286)
T ss_dssp HHHHHHTTCCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTCT
T ss_pred HHHHHhcCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHHhCCC
Confidence 44555555 4355555544543 233344554 489999999 4556666541 14577788887776666
Q ss_pred CCCEEEecCCCCCCCCchHHHH
Q 025219 138 SIDLIITFDNYGVSGHCNHRDV 159 (256)
Q Consensus 138 ~Pd~V~t~d~~g~d~H~DH~~v 159 (256)
+.|=|+..=| .-.|.|-..+
T Consensus 93 ~v~GIlVqlP--LP~~id~~~v 112 (286)
T 4a5o_A 93 AIDGILVQLP--LPAHLDASLL 112 (286)
T ss_dssp TCCEEEECSS--CCTTSCHHHH
T ss_pred CCCEEEEcCC--CCCCcCHHHH
Confidence 6777887733 3356665543
No 122
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=33.71 E-value=65 Score=26.44 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=50.9
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcE-EEccCCCCCCCccccCChHHHHHHHHHHHH-hcC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQV-KVLDLVDFQDGFDKLWNHKSLAKIVEEEVV-NCS 138 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~-~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~-~~~ 138 (256)
..|.+.|++ .+++++..........|.+-.+++++..|++.... ...+. |+.+...+.+.++++ .-+
T Consensus 118 ~~L~~~G~~-~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~ 186 (291)
T 3egc_A 118 EYLIARGHT-RIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGG----------VRADNGRDGAIKVLTGADR 186 (291)
T ss_dssp HHHHHTTCC-SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC----------------CCHHHHHHHHTC-CC
T ss_pred HHHHHcCCC-EEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCC----------CChhHHHHHHHHHHhCCCC
Confidence 355677865 23334332222345678888999999999853221 11111 122223344556664 346
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEEEe
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAWEL 180 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~e~ 180 (256)
||.||+.+ |. .+..+.++++..+ ++++.+.-.
T Consensus 187 ~~ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vvg~ 221 (291)
T 3egc_A 187 PTALLTSS--------HR--ITEGAMQALNVLGLRYGPDVEIVSF 221 (291)
T ss_dssp CSEEEESS--------HH--HHHHHHHHHHHHTCCBTTTBEEEEE
T ss_pred CcEEEECC--------cH--HHHHHHHHHHHcCCCCCCceEEEEe
Confidence 89999863 33 3344555655443 246655543
No 123
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=33.09 E-value=1.8e+02 Score=23.96 Aligned_cols=96 Identities=5% Similarity=-0.078 Sum_probs=51.6
Q ss_pred HHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025219 62 YLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (256)
Q Consensus 62 ~l~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (256)
.+.+. |++- +.+++..........|.+-.+++++..|++ +...-. ..|+.+...+.+.+++++. +
T Consensus 115 ~L~~~~~G~~~-I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~---~~~~~~--------~~~~~~~~~~~~~~~l~~~~~ 182 (313)
T 2h3h_A 115 IMKELLGGKGK-VVIGTGSLTAMNSLQRIQGFKDAIKDSEIE---IVDILN--------DEEDGARAVSLAEAALNAHPD 182 (313)
T ss_dssp HHHHHHTSCSE-EEEEESCSSCHHHHHHHHHHHHHHTTSSCE---EEEEEE--------CSSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHcCCCCE-EEEEECCCCCccHHHHHHHHHHHhcCCCCE---EEEeec--------CCCCHHHHHHHHHHHHHHCcC
Confidence 34454 6652 334433222223466878888888887772 211100 1245566667777888765 5
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC-CCceeEEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS-ERNIEAWE 179 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~-~~~~~~~e 179 (256)
||.|++.+ |.. +..+.++++..+ +.++.+.-
T Consensus 183 ~~ai~~~~--------d~~--a~g~~~al~~~G~p~dv~vvg 214 (313)
T 2h3h_A 183 LDAFFGVY--------AYN--GPAQALVVKNAGKVGKVKIVC 214 (313)
T ss_dssp CCEEEECS--------TTH--HHHHHHHHHHTTCTTTSEEEE
T ss_pred ceEEEEcC--------CCc--cHHHHHHHHHcCCCCCeEEEE
Confidence 79999873 222 334555665443 34555543
No 124
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=33.02 E-value=99 Score=27.58 Aligned_cols=62 Identities=13% Similarity=0.103 Sum_probs=39.3
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC-----chHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 025219 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG-----MGNIRKDELHRACAVLKIPLEQVKVLDLV 111 (256)
Q Consensus 42 vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~-----~~~~R~~E~~~A~~~LGv~~~~~~~l~~~ 111 (256)
++.++-=.|=-+ ++..+.++|.+|..+++..|..+. ....-.+.+++.|+.||++ ++++++.
T Consensus 13 lVa~SGGvDSsv-----~a~lL~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp---~~vv~~~ 79 (376)
T 2hma_A 13 VVGMSGGVDSSV-----TALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIP---YYSVNFE 79 (376)
T ss_dssp EEECCSSHHHHH-----HHHHHHHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCC---EEEEECH
T ss_pred EEEEeCHHHHHH-----HHHHHHHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCc---EEEEeCh
Confidence 333555444332 344566789999999998875421 1233456678889999994 5666653
No 125
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=32.93 E-value=1.5e+02 Score=26.80 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecCCCCCC-CCchHHHHHHHHHH
Q 025219 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWS 165 (256)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~v~~av~~ 165 (256)
+.+.++.+|+ ++..++ .+| +.+.+.+.|.+.+. +.|+|+|. .|.+ ++-|+ +.+++.+
T Consensus 209 L~~~l~~~G~---~v~~~~iv~D---------d~~~i~~al~~a~~--~~Dlvitt--GG~s~g~~D~--t~~al~~ 267 (411)
T 1g8l_A 209 VHLMLEQLGC---EVINLGIIRD---------DPHALRAAFIEADS--QADVVISS--GGVSVGEADY--TKTILEE 267 (411)
T ss_dssp HHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHH--HCSEEEEC--SSSCSSSCSH--HHHHHHH
T ss_pred HHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHhh--cCCEEEEC--CCCCCCCccc--HHHHHHh
Confidence 5667777898 333332 233 34677778887776 57999997 3322 45555 3444443
No 126
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=32.91 E-value=34 Score=28.32 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=27.2
Q ss_pred CCcEEEEecCchhhhcchHHHHHHHH-----hCCCcEEEEEEeC
Q 025219 39 KKNVLLVIAHPDDESMFFSPTINYLT-----SRRHNLHILCMSN 77 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~-----~~G~~V~vv~lT~ 77 (256)
++++|+|.+||.-. +....|++.. ++|++|.++-+.+
T Consensus 1 ~mkiLiI~gspr~~--S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEPK--SFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECCSCTT--SHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCC--CHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 36899999999976 3455554433 4689999998865
No 127
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=32.89 E-value=1.2e+02 Score=24.12 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=53.8
Q ss_pred HHHHHhCCCcEEEEEEeCC-CCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC
Q 025219 60 INYLTSRRHNLHILCMSNG-NADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS 138 (256)
Q Consensus 60 l~~l~~~G~~V~vv~lT~G-~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~ 138 (256)
...|.+.|++ .+.+++.. ........|.+-.+++++..|++. . .. .. .|+.+...+.+.++++ -+
T Consensus 107 ~~~L~~~G~~-~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~-~--~~-~~--------~~~~~~~~~~~~~~l~-~~ 172 (255)
T 1byk_A 107 MQRLYDQGHR-NISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP-V--AA-LP--------GLAMKQGYENVAKVIT-PE 172 (255)
T ss_dssp HHHHHHTTCC-CEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC-E--EE-CC--------CSCHHHHHHHSGGGCC-TT
T ss_pred HHHHHHcCCC-eEEEEecCCCCcccHHHHHHHHHHHHHHcCCCc-c--ee-ec--------CCccchHHHHHHHHhc-CC
Confidence 3456678886 34444432 122345678888999999999842 1 11 11 1334444445555554 46
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~e 179 (256)
|+.||+.+ |. .+..+.++++..+.+++.+.-
T Consensus 173 ~~ai~~~~--------d~--~A~g~~~al~~~g~~di~vig 203 (255)
T 1byk_A 173 TTALLCAT--------DT--LALGASKYLQEQRIDTLQLAS 203 (255)
T ss_dssp CCEEEESS--------HH--HHHHHHHHHHHTTCCSCEEEE
T ss_pred CCEEEEeC--------hH--HHHHHHHHHHHcCCCcEEEEE
Confidence 89998862 32 344556666554435555543
No 128
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=32.83 E-value=85 Score=25.22 Aligned_cols=81 Identities=9% Similarity=0.076 Sum_probs=42.8
Q ss_pred CcEEEEEEeCCCC---CCchHHHHHHHHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEE
Q 025219 68 HNLHILCMSNGNA---DGMGNIRKDELHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLII 143 (256)
Q Consensus 68 ~~V~vv~lT~G~~---~~~~~~R~~E~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~ 143 (256)
.+..+.++|.|+. +. .+.=..-+.+.++.+|+ ++.... .|| +.+.+.+.|.+.+. .+.|+|+
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~---~v~~~~iv~D---------d~~~I~~al~~a~~-~~~DlVI 94 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGF---VVDGVVAVEA---------DEVDIRNALNTAVI-GGVDLVV 94 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTE---EEEEEEEECS---------CHHHHHHHHHHHHH-TTCSEEE
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHh-CCCCEEE
Confidence 3455666666642 22 22223345566777887 233222 233 34667777777663 3689999
Q ss_pred ecCCCCCCCCchHHHHHHHHHH
Q 025219 144 TFDNYGVSGHCNHRDVHHGIWS 165 (256)
Q Consensus 144 t~d~~g~d~H~DH~~v~~av~~ 165 (256)
|. |+.+-.+.-.+.+++.+
T Consensus 95 tt---GGts~g~~D~t~eal~~ 113 (185)
T 3rfq_A 95 SV---GGTGVTPRDVTPESTRE 113 (185)
T ss_dssp EE---SCCSSSTTCCHHHHHHT
T ss_pred EC---CCCCCCCcccHHHHHHH
Confidence 98 33333333334444443
No 129
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=32.75 E-value=1.2e+02 Score=26.85 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=47.9
Q ss_pred EEEEEEeCCCCC--------C---chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc-cccCChHHHHHHHHHHHHhc
Q 025219 70 LHILCMSNGNAD--------G---MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF-DKLWNHKSLAKIVEEEVVNC 137 (256)
Q Consensus 70 V~vv~lT~G~~~--------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~-~~~~~~~~l~~~l~~~i~~~ 137 (256)
++=++++.|... | .+--+-.|..+-+..+|+ ..+..++.|+..|.. .+.|+++.++..-.+.|++.
T Consensus 31 I~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgvp~~Kd~~gs~A~~~~g~v~rair~iK~~ 108 (323)
T 1l6s_A 31 VLPIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGI--RSVMTFGISHHTDETGSDAWREDGLVARMSRICKQT 108 (323)
T ss_dssp EEEEEEETTCSSCEECTTSTTCEEEEGGGHHHHHHHHHHHTC--CEEEEEEECSSCBSSCGGGGSTTSHHHHHHHHHHHH
T ss_pred eeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEeCCCCCCCccccccCCCCCcHHHHHHHHHHH
Confidence 666778888652 1 222333444455666899 467777777655432 23467777777777778887
Q ss_pred CCCEEEecC
Q 025219 138 SIDLIITFD 146 (256)
Q Consensus 138 ~Pd~V~t~d 146 (256)
-||+++..|
T Consensus 109 ~pdl~vitD 117 (323)
T 1l6s_A 109 VPEMIVMSD 117 (323)
T ss_dssp CTTSEEEEE
T ss_pred CCCeEEEEe
Confidence 899876544
No 130
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=32.69 E-value=1.3e+02 Score=25.85 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcCCCEEEecC
Q 025219 125 SLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
.....+.+++++.+||+|+++.
T Consensus 86 ~~~~~l~~~l~~~~~Dvv~~~~ 107 (394)
T 2jjm_A 86 ALASKMAEVAQRENLDILHVHY 107 (394)
T ss_dssp HHHHHHHHHHHHHTCSEEEECS
T ss_pred HHHHHHHHHHHHcCCCEEEEcc
Confidence 3456788889999999999984
No 131
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=32.19 E-value=42 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCCCCC-CCchHHHHHHHHHHH
Q 025219 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWSY 166 (256)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~v~~av~~a 166 (256)
+.+.+.+.|.+.+++.+.|+|+|. .|.+ ++-|+ +.+++.++
T Consensus 46 d~~~i~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~ea~~~~ 87 (164)
T 2is8_A 46 EPPMIKKVLRLWADREGLDLILTN--GGTGLAPRDR--TPEATREL 87 (164)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEc--CCCCCCCCCC--hHHHHHHH
Confidence 346778888888775578999998 3322 45555 34444443
No 132
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=31.70 E-value=1.3e+02 Score=26.16 Aligned_cols=87 Identities=16% Similarity=0.097 Sum_probs=52.3
Q ss_pred HHHHHhC-C-CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025219 60 INYLTSR-R-HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (256)
Q Consensus 60 l~~l~~~-G-~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (256)
++++.++ | ....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|.. -+.+++.+.+.++-++
T Consensus 26 v~~l~~~~~~~~P~Lavilvg~dpaS~~Yv~~k--~k~~~~~Gi---~~~~~~lp~~-------~s~~ell~~I~~lN~d 93 (300)
T 4a26_A 26 VAALRELYGGRVPGLASIIVGQRMDSKKYVQLK--HKAAAEVGM---ASFNVELPED-------ISQEVLEVNVEKLNND 93 (300)
T ss_dssp HHHHHHHTTTCCCEEEEEEESCCHHHHHHHHHH--HHHHHHTTC---EEEEEEECTT-------CCHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCCCceEEEEEeCCCHHHHHHHHHH--HHHHHHcCC---eEEEEECCCC-------CCHHHHHHHHHHhcCC
Confidence 3444443 5 5556555555543 233445554 489999999 4556666541 1457778778777666
Q ss_pred cCCCEEEecCCCCCCCCchHHHHH
Q 025219 137 CSIDLIITFDNYGVSGHCNHRDVH 160 (256)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H~DH~~v~ 160 (256)
-+.|=|+..=| .-.|.|-..+-
T Consensus 94 ~~v~GIlVqlP--LP~~id~~~v~ 115 (300)
T 4a26_A 94 PNCHGIIVQLP--LPKHLNENRAI 115 (300)
T ss_dssp TTCCEEEECSC--CCTTSCHHHHH
T ss_pred CCCCEEEEcCC--CCCCCCHHHHH
Confidence 66777887733 33566655543
No 133
>3ipr_A PTS system, IIA component; stranded parallel beta-sheet flanked by 3 alpha-helices on EACH SIDE, transferase; 2.50A {Enterococcus faecalis} SCOP: c.54.1.0
Probab=31.53 E-value=1.4e+02 Score=22.83 Aligned_cols=65 Identities=15% Similarity=0.263 Sum_probs=42.6
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHH-cCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC--CEEEecCC
Q 025219 71 HILCMSNGNADGMGNIRKDELHRACAV-LKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI--DLIITFDN 147 (256)
Q Consensus 71 ~vv~lT~G~~~~~~~~R~~E~~~A~~~-LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P--d~V~t~d~ 147 (256)
.++.+|.|. =.+++.++++. +|- .+++..++++... +.+.+.+.+.+.+++... .+++..|-
T Consensus 3 giii~sHg~-------~A~gl~~~~~~i~G~-~~~i~av~~~~~~-------~~~~~~~~i~~~i~~~~~~~gvlvLtDl 67 (150)
T 3ipr_A 3 GIVIATHGA-------LSDGAKDAATVIMGA-TENIETVNLNSGD-------DVQALGGQIKTAIENVQQGDGVLVMVDL 67 (150)
T ss_dssp EEEEEEETT-------HHHHHHHHHHHHHSC-CCSEEEEEECTTC-------CHHHHHHHHHHHHHHHCSSSCEEEEESS
T ss_pred EEEEEECcH-------HHHHHHHHHHHHcCC-CCCEEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCCEEEEEeC
Confidence 467777772 23556666665 564 3578888876421 456778888888888754 37777777
Q ss_pred CCC
Q 025219 148 YGV 150 (256)
Q Consensus 148 ~g~ 150 (256)
.|+
T Consensus 68 ~GG 70 (150)
T 3ipr_A 68 LSA 70 (150)
T ss_dssp TTS
T ss_pred CCC
Confidence 664
No 134
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.31 E-value=83 Score=27.66 Aligned_cols=63 Identities=10% Similarity=0.070 Sum_probs=39.0
Q ss_pred CCCCCcEEEEecCc-----hhhhcchHHHHHHHHhCCCcEEEEEEeCCC---CCCchHHHHHHHHHHHHHcCC
Q 025219 36 TGDKKNVLLVIAHP-----DDESMFFSPTINYLTSRRHNLHILCMSNGN---ADGMGNIRKDELHRACAVLKI 100 (256)
Q Consensus 36 ~~~~~~vLvv~aHP-----DDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~---~~~~~~~R~~E~~~A~~~LGv 100 (256)
+..+.+|-+|+|=- +.+.+ --.+.+|.+.|.+|.+--.+... ..+..+.|.+|+.+|.+-=.+
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~--~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i 80 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRF--ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNV 80 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHH--HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTE
T ss_pred CCCCCEEEEEeCCCCccccCHHHH--HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCC
Confidence 56788888888642 22332 34467788899987652111111 134578899999998864333
No 135
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=31.28 E-value=1.6e+02 Score=24.21 Aligned_cols=88 Identities=13% Similarity=-0.050 Sum_probs=45.3
Q ss_pred hhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHH
Q 025219 52 ESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVE 131 (256)
Q Consensus 52 E~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~ 131 (256)
-.+++-|-...+.+.|....+++ |+.+.... |..+-.+..|+ .+ ..+|.-+|.. +....|.
T Consensus 27 ~~i~~DgGa~~l~~~g~~Pd~iv---GDfDSi~~----~~~~~~~~~~~---~i--~~~p~eKD~T-------D~e~Al~ 87 (222)
T 3lm8_A 27 LWIGVDKGTVTLLDAGIIPVEAF---GDFDSITE----QERRRIEKAAP---AL--HVYQAEKDQT-------DLDLALD 87 (222)
T ss_dssp EEEEETHHHHHHHHHTCCCSEEE---SCSTTSCH----HHHHHHHHHCT---TC--EEECCCSSSC-------HHHHHHH
T ss_pred EEEEECHHHHHHHHcCCCCcEEE---eCcccCCH----HHHHHHHhcCC---eE--EEeCCCCCCC-------HHHHHHH
Confidence 34556666667777776655444 55554422 22333344565 22 2233222221 2222333
Q ss_pred HHHHhcCCCEEEecCCCCCCCCchHHHHHH
Q 025219 132 EEVVNCSIDLIITFDNYGVSGHCNHRDVHH 161 (256)
Q Consensus 132 ~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~ 161 (256)
..++ ..++.|+.. .+..+-.||....-
T Consensus 88 ~a~~-~g~~~I~i~--Ga~GgR~DH~lani 114 (222)
T 3lm8_A 88 WALE-KQPDIIQIF--GITGGRADHFLGNI 114 (222)
T ss_dssp HHHH-HCCSEEEEE--SCCCSCHHHHHHHH
T ss_pred HHHH-cCCCEEEEE--cCCCCchhHHHHHH
Confidence 3333 367888887 44568999987543
No 136
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=31.19 E-value=2.5e+02 Score=24.27 Aligned_cols=73 Identities=18% Similarity=-0.049 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCC---CCccccCChH---HHHHHHH
Q 025219 58 PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ---DGFDKLWNHK---SLAKIVE 131 (256)
Q Consensus 58 gtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~---dg~~~~~~~~---~l~~~l~ 131 (256)
-.|.+..+.|. .+++|+.+ .|..+++..+|. ++.....+-.. -|.....+.+ +.++.+.
T Consensus 154 e~I~~A~~~gL-~Ti~~v~~-----------~eeA~amA~agp---DiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~ 218 (286)
T 2p10_A 154 EMIAEAHKLDL-LTTPYVFS-----------PEDAVAMAKAGA---DILVCHMGLTTGGAIGARSGKSMDDCVSLINECI 218 (286)
T ss_dssp HHHHHHHHTTC-EECCEECS-----------HHHHHHHHHHTC---SEEEEECSCC---------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-eEEEecCC-----------HHHHHHHHHcCC---CEEEECCCCCCCCcccCCCcccHHHhHHHHHHHH
Confidence 35666777776 44555544 344556678898 56665555111 1222222333 4777888
Q ss_pred HHHHhcCCCEEEec
Q 025219 132 EEVVNCSIDLIITF 145 (256)
Q Consensus 132 ~~i~~~~Pd~V~t~ 145 (256)
+.+++.+||+++..
T Consensus 219 ~a~~~vnpdvivLc 232 (286)
T 2p10_A 219 EAARTIRDDIIILS 232 (286)
T ss_dssp HHHHHHCSCCEEEE
T ss_pred HHHHHhCCCcEEEe
Confidence 88899999987665
No 137
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=30.10 E-value=2.8e+02 Score=24.19 Aligned_cols=76 Identities=14% Similarity=-0.004 Sum_probs=45.4
Q ss_pred HHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh-c
Q 025219 61 NYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN-C 137 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~-~ 137 (256)
..|.+.|++= +.+++...... ....|.+-.+++++..|++. ..+..... ..++.+...+.+.+++++ -
T Consensus 132 ~~L~~~G~r~-I~~i~~~~~~~~~~~~~R~~Gf~~al~~~g~~~--~~~~~~~~------~~~~~~~~~~~~~~~l~~~~ 202 (412)
T 4fe7_A 132 LHLKEKGVNR-FAFYGLPESSGKRWATEREYAFRQLVAEEKYRG--VVYQGLET------APENWQHAQNRLADWLQTLP 202 (412)
T ss_dssp HHHHHTTCCE-EEEECCCTTSCCHHHHHHHHHHHHHHTTSSSCC--EEECCSCS------SCSSHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCce-EEEecccccccccHHHHHHHHHHHHHHHcCCCc--cccccccc------cccchhhHHHHHHHHHHhCC
Confidence 4567889863 34443322222 26778888999999999842 22222111 112344556667777766 4
Q ss_pred CCCEEEec
Q 025219 138 SIDLIITF 145 (256)
Q Consensus 138 ~Pd~V~t~ 145 (256)
+||.||+.
T Consensus 203 ~~~aI~~~ 210 (412)
T 4fe7_A 203 PQTGIIAV 210 (412)
T ss_dssp TTEEEEES
T ss_pred CCeEEEEE
Confidence 68888887
No 138
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=29.78 E-value=92 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEecCCCCCC-CCchHHHHHHHHHHH
Q 025219 122 NHKSLAKIVEEEVVNCSIDLIITFDNYGVS-GHCNHRDVHHGIWSY 166 (256)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d-~H~DH~~v~~av~~a 166 (256)
+.+.+.+.|.+.+...+.|+|+|. .|.+ ++-|+ +.+++.++
T Consensus 55 d~~~i~~~l~~~~~~~~~DlVitt--GG~g~g~~D~--t~~a~~~~ 96 (167)
T 1uuy_A 55 EVERIKDILQKWSDVDEMDLILTL--GGTGFTPRDV--TPEATKKV 96 (167)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE--SCCSSSTTCC--HHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--CCCCCCCCCc--hHHHHHHH
Confidence 346777888887764578999998 3322 44454 44444444
No 139
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A*
Probab=29.77 E-value=30 Score=31.19 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCCCEEEecCCCCCCCCc------------hHHHHHHHHHHHHh
Q 025219 128 KIVEEEVVNCSIDLIITFDNYGVSGHC------------NHRDVHHGIWSYLN 168 (256)
Q Consensus 128 ~~l~~~i~~~~Pd~V~t~d~~g~d~H~------------DH~~v~~av~~a~~ 168 (256)
+.+...+++++||+|+.. -|.|.|. ++....+.+.+...
T Consensus 247 ~~v~p~l~~f~PdlIvvs--aG~Da~~~DpLg~l~lt~~g~~~~~~~l~~~a~ 297 (369)
T 1zz1_A 247 QVVLPALRAYRPQLIIVG--SGFDASMLDPLARMMVTADGFRQMARRTIDCAA 297 (369)
T ss_dssp HTHHHHHHHHCCSEEEEE--ECCTTBTTCTTCCCBBCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEe--CCccCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 347778899999999986 5655543 45666666665543
No 140
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A*
Probab=29.64 E-value=42 Score=30.50 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCCch
Q 025219 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (256)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (256)
+.+.|..++++++||+|+.. -|.|.|.+
T Consensus 244 ~~~~l~p~~~~F~PdlIvvs--aG~Da~~~ 271 (388)
T 3ew8_A 244 CESVLKEVYQAFNPKAVVLQ--LGADTIAG 271 (388)
T ss_dssp HHHHHHHHHHHHCCSEEEEE--CCSTTBTT
T ss_pred HHHHHHHHHHHhCCCEEEEE--CCccCCCC
Confidence 34556778899999999987 66666553
No 141
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=29.17 E-value=1.6e+02 Score=24.16 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=24.8
Q ss_pred HHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 93 RACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 93 ~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.|+..|+| +...+..++ .. +.+.+.+++.+||+|+...
T Consensus 52 ~~A~~~gIp---~~~~~~~~~--------~~----~~~~~~L~~~~~Dlivlag 90 (215)
T 3kcq_A 52 LIAQSYGIP---TFVVKRKPL--------DI----EHISTVLREHDVDLVCLAG 90 (215)
T ss_dssp HHHHHTTCC---EEECCBTTB--------CH----HHHHHHHHHTTCSEEEESS
T ss_pred HHHHHcCCC---EEEeCcccC--------Ch----HHHHHHHHHhCCCEEEEeC
Confidence 456778994 444443221 11 4566777889999999874
No 142
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=29.16 E-value=77 Score=25.84 Aligned_cols=99 Identities=12% Similarity=0.126 Sum_probs=51.8
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcC--
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCS-- 138 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~-- 138 (256)
..|.+.|++- +.+++.. .......|.+-.+++++..|++.....+..... .+..+...+.+.+++++..
T Consensus 130 ~~L~~~G~~~-i~~i~~~-~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~ 200 (298)
T 3tb6_A 130 EHLLSLGHTH-MMGIFKA-DDTQGVKRMNGFIQAHRERELFPSPDMIVTFTT-------EEKESKLLEKVKATLEKNSKH 200 (298)
T ss_dssp HHHHHTTCCS-EEEEEES-SSHHHHHHHHHHHHHHHHTTCCCCGGGEEEECH-------HHHTTHHHHHHHHHHHHTTTS
T ss_pred HHHHHCCCCc-EEEEcCC-CCccHHHHHHHHHHHHHHcCCCCCcceEEEecc-------cchhhhHHHHHHHHHhcCCCC
Confidence 3556778752 2223221 123456788889999999988532211221110 0011123556677777653
Q ss_pred -CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcC---CCceeEE
Q 025219 139 -IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTS---ERNIEAW 178 (256)
Q Consensus 139 -Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~---~~~~~~~ 178 (256)
||.||+.+ |. .+..+.++++..+ ++++.+.
T Consensus 201 ~~~ai~~~~--------d~--~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 201 MPTAILCYN--------DE--IALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp CCSEEECSS--------HH--HHHHHHHHHHHTTCCTTTTCEEE
T ss_pred CCeEEEEeC--------cH--HHHHHHHHHHHcCCCCCCceEEE
Confidence 89998862 33 3344556665543 2455554
No 143
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=29.06 E-value=94 Score=24.90 Aligned_cols=24 Identities=13% Similarity=0.170 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEec
Q 025219 122 NHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
+.+.+.+.|.+.+.+.+.|+|+|.
T Consensus 62 d~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 62 EIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp CHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEc
Confidence 346778888888776679999998
No 144
>3iuu_A MLRC-like, putative metallopeptidase; YP_676511.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 2.13A {Mesorhizobium SP}
Probab=28.86 E-value=3.6e+02 Score=25.12 Aligned_cols=104 Identities=14% Similarity=0.097 Sum_probs=61.9
Q ss_pred hHHHHHHHHhCCCcEEEEEEeCCCCCCch-----HHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCccccCCh-HHHH
Q 025219 56 FSPTINYLTSRRHNLHILCMSNGNADGMG-----NIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGFDKLWNH-KSLA 127 (256)
Q Consensus 56 ~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~-----~~R~~E~~~A~~~LGv~~~~~~~l~~~d~--~dg~~~~~~~-~~l~ 127 (256)
.||.+....+.|+++.-.......++|.. +.=+.|+....+...+ +-.+|+..-. -+|.+ +. -++.
T Consensus 48 ~~g~~~~a~~~g~elvp~l~A~A~P~G~V~~~aye~l~~eil~l~~a~p~---Dgv~L~LHGAmv~eg~~---D~EGdlL 121 (495)
T 3iuu_A 48 LSGIVKTAEALGYRCVPSISARARPGGAIEQKVFDNIVDEFVQAARMQDF---DAICLDLHGATLAEHTL---DTEGYLL 121 (495)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEECSEECBCHHHHHHHHHHHHHHHHHSCC---SEEEEEECSCCCBSSCS---SHHHHHH
T ss_pred hHHHHHHHHHCCcEEeeeEEEeecCCccccHHHHHHHHHHHHHHHhcCCC---CEEEEeccCcEeecCCC---CchHHHH
Confidence 67888888889999887777666665421 2223555544445555 3456665321 01111 12 2445
Q ss_pred HHHHHHHHhcCCCE--EEecCCCC-----------------CCCCchHHHHHHHHHHHHh
Q 025219 128 KIVEEEVVNCSIDL--IITFDNYG-----------------VSGHCNHRDVHHGIWSYLN 168 (256)
Q Consensus 128 ~~l~~~i~~~~Pd~--V~t~d~~g-----------------~d~H~DH~~v~~av~~a~~ 168 (256)
+.+.+++ .||+ +.+.|+|+ .+.|.|-..+++-+.+.+.
T Consensus 122 ~rvR~~v---Gp~vpI~~slDlH~Nvt~~mv~~aD~l~~yrtyPH~D~~etg~raa~lL~ 178 (495)
T 3iuu_A 122 SRLREVV---GNDIMISLALDLHAYLTPQMVEQATIITSFRTTPHADIEETGVRAMTLLD 178 (495)
T ss_dssp HHHHHHH---TTTSEEEEEECTTCCCCHHHHHHCSEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHh---CCCCeEEEEeCCCCCccHHHHhhCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence 5554444 5664 55677776 3789999988877766653
No 145
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=28.70 E-value=84 Score=29.90 Aligned_cols=72 Identities=22% Similarity=0.241 Sum_probs=39.7
Q ss_pred hHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHH
Q 025219 56 FSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVV 135 (256)
Q Consensus 56 ~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~ 135 (256)
.+..|..+.++|++|.. ++|+-+... ++.......+.|+..|+| +...+ +. ..+ .+.+.++
T Consensus 12 ~~~~l~~l~~~~~~i~~-v~t~~~~~~-~~~~~~~~~~~a~~~~ip---~~~~~--~~--------~~~----~~~~~l~ 72 (660)
T 1z7e_A 12 GCLGIEALLAAGYEISA-IFTHTDNPG-EKAFYGSVARLAAERGIP---VYAPD--NV--------NHP----LWVERIA 72 (660)
T ss_dssp HHHHHHHHHHTTCEEEE-EECCCC---------CCHHHHHHHHTCC---EECCS--CT--------TSH----HHHHHHH
T ss_pred HHHHHHHHHhCCCCEEE-EEeCCCCCc-cCcCccHHHHHHHHcCCC---EeccC--CC--------CcH----HHHHHHH
Confidence 46678888888998754 456643211 122223356677788994 22211 11 112 2445667
Q ss_pred hcCCCEEEecC
Q 025219 136 NCSIDLIITFD 146 (256)
Q Consensus 136 ~~~Pd~V~t~d 146 (256)
+++||+|++..
T Consensus 73 ~~~~d~iv~~~ 83 (660)
T 1z7e_A 73 QLSPDVIFSFY 83 (660)
T ss_dssp HHCCSEEEEES
T ss_pred hcCCCEEEEcC
Confidence 78999998863
No 146
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens}
Probab=28.40 E-value=33 Score=31.00 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCCc
Q 025219 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (256)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (256)
+.+.+..++++++||+|+.. -|.|.|.
T Consensus 236 ~~~~l~p~~~~f~Pd~Ivvs--aG~Da~~ 262 (376)
T 4a69_A 236 FQPVINQVVDFYQPTCIVLQ--CGADSLG 262 (376)
T ss_dssp HHHHHHHHHHHHCCSEEEEE--CCGGGBT
T ss_pred HHHHHHHHHHHhCCCEEEEe--CcccCCC
Confidence 44556778899999999976 5555443
No 147
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=28.37 E-value=2.5e+02 Score=23.09 Aligned_cols=86 Identities=9% Similarity=0.102 Sum_probs=48.4
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++=- |-|-.++ +++++|++|.++.-.+ ..+.++..+..+..|. ++.++.. |..
T Consensus 29 l~gk~~lVTGas~-----GIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~l~~~~~---~~~~~~~-Dv~- 91 (271)
T 3v2g_A 29 LAGKTAFVTGGSR-----GIGAAIAKRLALEGAAVALTYVNA-------AERAQAVVSEIEQAGG---RAVAIRA-DNR- 91 (271)
T ss_dssp CTTCEEEEETTTS-----HHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred CCCCEEEEeCCCc-----HHHHHHHHHHHHCCCEEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEC-CCC-
Confidence 4567788888742 4454444 5678999876554222 2344555555555665 3443321 211
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 92 ------d~~~v~~~~~~~~~~~g~iD~lvnn 116 (271)
T 3v2g_A 92 ------DAEAIEQAIRETVEALGGLDILVNS 116 (271)
T ss_dssp ------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CHHHHHHHHHHHHHHcCCCcEEEEC
Confidence 3456666666666665 67888754
No 148
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=28.16 E-value=2e+02 Score=23.24 Aligned_cols=91 Identities=9% Similarity=0.035 Sum_probs=50.5
Q ss_pred CCc-EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEE
Q 025219 67 RHN-LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLII 143 (256)
Q Consensus 67 G~~-V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~ 143 (256)
|++ +.+++++..........|.+-.+++++.. |++ +...-. ..|+.+...+.+.+++++. +||.|+
T Consensus 128 G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~~g~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~~~ai~ 196 (290)
T 2fn9_A 128 DAKEIPYAELLGILSAQPTWDRSNGFHSVVDQYPEFK---MVAQQS--------AEFDRDTAYKVTEQILQAHPEIKAIW 196 (290)
T ss_dssp SCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTSTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cccceeEEEEEcCCCCchHHHHHHHHHHHHHhCCCCE---EEEecc--------CCCCHHHHHHHHHHHHHhCCCCcEEE
Confidence 665 33455543322233567888888998887 662 211101 1244555566777777764 689999
Q ss_pred ecCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEE
Q 025219 144 TFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAW 178 (256)
Q Consensus 144 t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~ 178 (256)
+.+ |.. +..+.++++..+.+++.+.
T Consensus 197 ~~~--------d~~--a~g~~~al~~~g~~dv~vi 221 (290)
T 2fn9_A 197 CGN--------DAM--ALGAMKACEAAGRTDIYIF 221 (290)
T ss_dssp ESS--------HHH--HHHHHHHHHHTTCTTCEEE
T ss_pred ECC--------chH--HHHHHHHHHHCCCCCeEEE
Confidence 862 333 3455666655443455544
No 149
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=27.91 E-value=72 Score=27.45 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCCcEEEEecCchh-hhcchHHHHHHHHhCCCcEEEEE
Q 025219 37 GDKKNVLLVIAHPDD-ESMFFSPTINYLTSRRHNLHILC 74 (256)
Q Consensus 37 ~~~~~vLvv~aHPDD-E~l~~Ggtl~~l~~~G~~V~vv~ 74 (256)
.+.+|||++. .|-- -..-+=+....|+++|++|++++
T Consensus 20 ~~~MRIL~~~-~p~~GHv~P~l~LA~~L~~rGh~Vt~~t 57 (400)
T 4amg_A 20 FQSMRALFIT-SPGLSHILPTVPLAQALRALGHEVRYAT 57 (400)
T ss_dssp -CCCEEEEEC-CSSHHHHGGGHHHHHHHHHTTCEEEEEE
T ss_pred CCCCeEEEEC-CCchhHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4568999764 4421 23334456667889999998764
No 150
>1sfs_A Hypothetical protein; structural genomics, unknown function, possible bacterial lysozyme, PSI, protein structure initiative; 1.07A {Geobacillus stearothermophilus} SCOP: c.1.8.8
Probab=27.89 E-value=1.6e+02 Score=24.89 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCC
Q 025219 59 TINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDF 113 (256)
Q Consensus 59 tl~~l~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~ 113 (256)
=+..+.+.|.++.-++-..++..+ .|..-.+...++++.||+|+.-++|.+..|+
T Consensus 74 Ev~~i~a~Gl~i~PIYq~~~~~~g~~qG~~dA~~Av~~A~~lG~p~gtiyFAviED~ 130 (240)
T 1sfs_A 74 EIVRIRNYGVKVLPIYNAFREAVGYANGQVAARNAVFHARRLGIPKNKLLFANIEDF 130 (240)
T ss_dssp HHHHHHHTTCEEEEEECCCSCBCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEECCTT
T ss_pred HHHHHHHCCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcccC
Confidence 345555566666666554443322 3444455667788899999877888887664
No 151
>3obk_A Delta-aminolevulinic acid dehydratase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; HET: PBG; 2.50A {Toxoplasma gondii ME49}
Probab=27.65 E-value=1.7e+02 Score=26.09 Aligned_cols=88 Identities=9% Similarity=0.087 Sum_probs=51.3
Q ss_pred HHHHHHHHhCC-----CcEEEEEEeCCCCC-------C---chHHHHHHHHHHHHHcCCCCCcEEEccC--CCCCCCc-c
Q 025219 57 SPTINYLTSRR-----HNLHILCMSNGNAD-------G---MGNIRKDELHRACAVLKIPLEQVKVLDL--VDFQDGF-D 118 (256)
Q Consensus 57 Ggtl~~l~~~G-----~~V~vv~lT~G~~~-------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~--~d~~dg~-~ 118 (256)
...+.++.++- .=|+=++++.|+.. | .+--+-.|..+-+..+|+ ..+..++. |+.+|.. .
T Consensus 29 ~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~av~LFgv~~p~~KD~~gs 106 (356)
T 3obk_A 29 NRAVRQLVQENLVKPSSLIYPLFVHDEETSVPIPSMPGQSRLSMEDLLKEVGEARSYGI--KAFMLFPKVDDELKSVMAE 106 (356)
T ss_dssp SHHHHHHHCCCCCCGGGEEEEEEEESSSSCEECTTSTTCEEECHHHHHHHHHHHHHTTC--CEEEEEEECCGGGCBSSCG
T ss_pred CHHHHHHHhhcCCCHHHceeeEEEecCCCCcccCCCCCceEECHHHHHHHHHHHHHCCC--CEEEEecCCCcccCCcccc
Confidence 45667777542 22667778887642 1 223334444455667999 45665565 3333322 2
Q ss_pred ccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 119 KLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 119 ~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+.|+++.++..-.+.|++.-||+++..|
T Consensus 107 ~A~~~~g~v~rAir~iK~~~P~l~VitD 134 (356)
T 3obk_A 107 ESYNPDGLLPRAIMALKEAFPDVLLLAD 134 (356)
T ss_dssp GGGCTTSHHHHHHHHHHHHSTTCEEEEE
T ss_pred cccCCCChHHHHHHHHHHHCCCCEEEEe
Confidence 3467777777666677776799876544
No 152
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=27.48 E-value=2e+02 Score=22.23 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCCCcEEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 91 LHRACAVLKIPLEQVKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
+.+.++.+|+ ++.... .+| +.+.+.+.+.+.....+.|+|+|.
T Consensus 45 L~~~L~~~G~---~v~~~~iV~D---------d~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 45 IKQLLIENGH---KIIGYSLVPD---------DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHTTC---EEEEEEEECS---------CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHCCC---EEEEEEEeCC---------CHHHHHHHHHHHHhcCCCCEEEec
Confidence 4566777898 333222 233 346677777777777789999998
No 153
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=26.68 E-value=65 Score=23.15 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=27.9
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEe-CC-CCCCchHHHHHHHHHH-HHHcCCCCCcEE
Q 025219 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMS-NG-NADGMGNIRKDELHRA-CAVLKIPLEQVK 106 (256)
Q Consensus 42 vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT-~G-~~~~~~~~R~~E~~~A-~~~LGv~~~~~~ 106 (256)
..+|.-||++. +.+||+ .....++.++ .| -.....+.=.+++.++ .+.||+++++++
T Consensus 37 ~~~v~~~~~~~-~~~~g~-------~~~~~~v~i~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~ 96 (115)
T 2xcz_A 37 YVMTSLQCGVP-MTFSGN-------TEPTCYVEVKSIGALDGSRTQEVSELVCGHIEQNLGIPADRIY 96 (115)
T ss_dssp GCEEEEECSCC-CCBTTB-------CSSCEEEEEEESSCCCTTHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred HEEEEEECCCc-eEECCC-------CCcEEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEE
Confidence 34455576555 566774 1233444443 22 2222222223444444 456899988865
No 154
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A*
Probab=26.55 E-value=30 Score=31.61 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCCc
Q 025219 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHC 154 (256)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~ 154 (256)
+.+.+..++++++||+|+.. -|.|.|.
T Consensus 267 ~~~~v~p~~~~f~Pdlivvs--aG~Da~~ 293 (413)
T 2vqm_A 267 FRTVVMPIASEFAPDVVLVS--SGFDAVE 293 (413)
T ss_dssp HHHTHHHHHHHHCCSEEEEE--ECCTTBS
T ss_pred HHHHHHHHHHhcCCCEEEEe--CChhhcC
Confidence 34456678899999999987 6777664
No 155
>3bed_A PTS system, IIA component; mannose/sorbose, phosphotransferase system, structural genom APC28805, PSI-2, protein structure initiative; HET: MSE MLY; 1.45A {Enterococcus faecalis} SCOP: c.54.1.1
Probab=26.49 E-value=1.2e+02 Score=22.90 Aligned_cols=66 Identities=11% Similarity=0.136 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCC-CEEEecCC
Q 025219 70 LHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSI-DLIITFDN 147 (256)
Q Consensus 70 V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~P-d~V~t~d~ 147 (256)
+.++.+|.|. -.+++.++++.+ |- .+++..++++... +.+++.+.+.+.+++... .+++..|-
T Consensus 6 i~iiivsHG~-------~A~gl~~~~~~i~G~-~~~i~ai~~~~~~-------~~~~~~~~i~~~i~~~~~~gvliLtDl 70 (142)
T 3bed_A 6 PKLILMSHGR-------MAEETLASTQMIVGE-LADAAIVSMTAED-------GLSGTQAKLAAILKEAGNVPTLVLADL 70 (142)
T ss_dssp SEEEEEEETT-------HHHHHHHHHHHHHCT-TCCCEEEEECTTT-------HHHHHHHHHHHHHHHHCSCCEEEEESS
T ss_pred ccEEEEcChH-------HHHHHHHHHHHHcCC-CCCEEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 4677888883 346777777775 74 3578888875421 345677888888887653 47777776
Q ss_pred CCC
Q 025219 148 YGV 150 (256)
Q Consensus 148 ~g~ 150 (256)
.|+
T Consensus 71 ~GG 73 (142)
T 3bed_A 71 XGG 73 (142)
T ss_dssp TTS
T ss_pred CCC
Confidence 664
No 156
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=26.37 E-value=62 Score=26.72 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=26.5
Q ss_pred CCCCcEEEEecCchhhh--cchHHHHHH-----HHhCCCcEEEEEEeCC
Q 025219 37 GDKKNVLLVIAHPDDES--MFFSPTINY-----LTSRRHNLHILCMSNG 78 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~--l~~Ggtl~~-----l~~~G~~V~vv~lT~G 78 (256)
...+++|+|.+||+-+. =+....|++ +.++|++|.++.+..+
T Consensus 23 ~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~ 71 (218)
T 3rpe_A 23 NAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQG 71 (218)
T ss_dssp -CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred ccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCc
Confidence 34578999999997320 122333332 2357999999998653
No 157
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=25.97 E-value=2.7e+02 Score=22.72 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 91 LHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 91 ~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..+.|+..|+| +..++..++. +.++--+.+.+.+++.+||+|++..
T Consensus 44 v~~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dliv~ag 89 (211)
T 3p9x_A 44 VVERVKVHEIP---VCALDPKTYP-------SKEAYEIEVVQQLKEKQIDFVVLAG 89 (211)
T ss_dssp HHHHHHTTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHcCCC---EEEeChhhcC-------chhhhHHHHHHHHHhcCCCEEEEeC
Confidence 34566778994 3444432221 2233345677888899999999873
No 158
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=25.94 E-value=1.8e+02 Score=23.87 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=34.9
Q ss_pred cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 69 NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 69 ~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
+| ++++|+-+. ...+.|+..|+| +...+..+.. +.++.-+.+.+.+++++||+|++..
T Consensus 40 eI-~~Vis~~~a---------~~~~~A~~~gIp---~~~~~~~~~~-------~r~~~d~~~~~~l~~~~~Dlivlag 97 (215)
T 3da8_A 40 RV-VAVGVDREC---------RAAEIAAEASVP---VFTVRLADHP-------SRDAWDVAITAATAAHEPDLVVSAG 97 (215)
T ss_dssp EE-EEEEESSCC---------HHHHHHHHTTCC---EEECCGGGSS-------SHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred eE-EEEEeCCch---------HHHHHHHHcCCC---EEEeCccccc-------chhhhhHHHHHHHHhhCCCEEEEcC
Confidence 55 445677542 124557778994 3444432221 2334445678888999999999873
No 159
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=25.84 E-value=1.5e+02 Score=26.53 Aligned_cols=62 Identities=15% Similarity=0.179 Sum_probs=39.4
Q ss_pred EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCc-----hHHHHHHHHHHHHHcCCCCCcEEEccCC
Q 025219 42 VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGM-----GNIRKDELHRACAVLKIPLEQVKVLDLV 111 (256)
Q Consensus 42 vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~-----~~~R~~E~~~A~~~LGv~~~~~~~l~~~ 111 (256)
++.++-=-|--+ ++..+.++|.+|..+++..+..++. ...-.+.+++.|+.||++ ++++++.
T Consensus 21 vVa~SGGvDSsv-----~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp---~~vvd~~ 87 (380)
T 2der_A 21 IVGMSGGVDSSV-----SAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIE---LHTVNFA 87 (380)
T ss_dssp EEECCSCSTTHH-----HHHHHHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCC---EEEEECH
T ss_pred EEEEEChHHHHH-----HHHHHHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCc---EEEEeCc
Confidence 444555555443 4455667899999999987754321 122345577889999994 5666653
No 160
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=25.76 E-value=56 Score=27.62 Aligned_cols=41 Identities=10% Similarity=0.127 Sum_probs=26.0
Q ss_pred HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCC
Q 025219 61 NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPL 102 (256)
Q Consensus 61 ~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~ 102 (256)
..|.+.|++ .+.+++..........|.+-.+++++..|++.
T Consensus 165 ~~L~~~G~~-~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 165 DHLYEKGCR-KILHIKGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp HHHHHTTCC-SEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHCCCC-eEEEEeCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 356678876 33444432222235678888999999999853
No 161
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=25.73 E-value=1.1e+02 Score=26.44 Aligned_cols=81 Identities=10% Similarity=0.096 Sum_probs=48.1
Q ss_pred cccCCCCCc-EEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-------CCCCCc
Q 025219 33 FLTTGDKKN-VLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVL-------KIPLEQ 104 (256)
Q Consensus 33 ~~~~~~~~~-vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-------Gv~~~~ 104 (256)
..|.+..++ ++.++. .|-.+ +...+.++|.+|..+.+-.| +...+..++.|+.| |+ .
T Consensus 173 GlP~g~~~kvlvllSG-vDS~v-----aa~ll~~~G~~v~~v~~~~~------~~~~~~a~~~a~~l~~~~~~~~i---~ 237 (307)
T 1vbk_A 173 GLPIGTEGRMIGILHD-ELSAL-----AIFLMMKRGVEVIPVYIGKD------DKNLEKVRSLWNLLKRYSYGSKG---F 237 (307)
T ss_dssp SBCTTTTCEEEEECSS-HHHHH-----HHHHHHHBTCEEEEEEESCS------SHHHHHHHHHHHHHHTTCTTSCC---C
T ss_pred CCCcCCCCcEEEEEeC-CcHHH-----HHHHHHhCCCeEEEEEEEEC------HHHHHHHHHHHHHHhhhccCCCC---c
Confidence 355555555 555677 77654 23345679999999888622 12234456777777 33 2
Q ss_pred EEEcc-CCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 105 VKVLD-LVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 105 ~~~l~-~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
+++.+ + .+.. ++.++.+.|.|+|-
T Consensus 238 ~~vv~~~-------------~~~~----~~A~~~ga~~I~tG 262 (307)
T 1vbk_A 238 LVVAESF-------------DRVL----KLIRDFGVKGVIKG 262 (307)
T ss_dssp CEEESSH-------------HHHH----HHHHHHTCCEEECC
T ss_pred EEEeCCC-------------HHHH----HHHHHcCCCEEEEC
Confidence 23333 2 1111 55667799999885
No 162
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens}
Probab=25.62 E-value=40 Score=30.37 Aligned_cols=28 Identities=7% Similarity=0.115 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCCch
Q 025219 126 LAKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (256)
Q Consensus 126 l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (256)
+.+.+..++++++||+|+.. -|.|.|.+
T Consensus 235 ~~~~~~~~~~~f~Pd~ivvs--aG~D~~~~ 262 (367)
T 3max_A 235 FKPIISKVMEMYQPSAVVLQ--CGADSLSG 262 (367)
T ss_dssp HHHHHHHHHHHHCCSEEEEE--CCGGGBTT
T ss_pred HHHHHHHHHHHhCCCEEEEE--CCccCcCC
Confidence 34456678899999999986 56554443
No 163
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=25.60 E-value=2.4e+02 Score=23.26 Aligned_cols=73 Identities=10% Similarity=0.044 Sum_probs=42.4
Q ss_pred hHHHHHHHHhC--CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHH
Q 025219 56 FSPTINYLTSR--RHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEE 133 (256)
Q Consensus 56 ~Ggtl~~l~~~--G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~ 133 (256)
...++..+.+. |++= +.++++.. ...+..|.+..+++++..|++ +......+ .++..+.+.++
T Consensus 126 ~~~~~~~l~~~~Pg~~~-I~~i~~~~-~~~~~~r~~g~~~al~~~gi~---~~~~~~~~----------~~~~~~~~~~l 190 (302)
T 2qh8_A 126 VEQHVELIKEILPNVKS-IGVVYNPG-EANAVSLMELLKLSAAKHGIK---LVEATALK----------SADVQSATQAI 190 (302)
T ss_dssp HHHHHHHHHHHSTTCCE-EEEEECTT-CHHHHHHHHHHHHHHHHTTCE---EEEEECSS----------GGGHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcE-EEEEecCC-CcchHHHHHHHHHHHHHcCCE---EEEEecCC----------hHHHHHHHHHH
Confidence 34556666665 8763 44444332 223567889999999999983 22211111 12334445555
Q ss_pred HHhcCCCEEEec
Q 025219 134 VVNCSIDLIITF 145 (256)
Q Consensus 134 i~~~~Pd~V~t~ 145 (256)
.. +||.||+.
T Consensus 191 ~~--~~dai~~~ 200 (302)
T 2qh8_A 191 AE--KSDVIYAL 200 (302)
T ss_dssp GG--GCSEEEEC
T ss_pred hc--cCCEEEEC
Confidence 43 79999986
No 164
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.38 E-value=2.7e+02 Score=24.92 Aligned_cols=45 Identities=13% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHHH--HHHHhCCCcEEEEEEeCCC-CCCchHHHHHHHHHHHHHcCCC
Q 025219 57 SPTI--NYLTSRRHNLHILCMSNGN-ADGMGNIRKDELHRACAVLKIP 101 (256)
Q Consensus 57 Ggtl--~~l~~~G~~V~vv~lT~G~-~~~~~~~R~~E~~~A~~~LGv~ 101 (256)
||-+ ..|.+.|++-.+.+-..-. .......|.+-.++||+-.|++
T Consensus 143 Ggy~A~~~Li~~Ghk~Ia~Isgp~~~~~~~~~~R~~Gyk~Al~e~Gi~ 190 (371)
T 3qi7_A 143 RGKVLAERSKEMGAKAFIHYASTDDLKDVNIAKRLEMIKETCKNIGLP 190 (371)
T ss_dssp HHHHHHHHHHHTTCSCEEEEEETTGGGSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCCEEEEEeccccccchhHHHHHHHHHHHHHHcCCC
Confidence 5544 3667889874333322111 1123456999999999999994
No 165
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=25.03 E-value=2.6e+02 Score=22.17 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=46.0
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl-~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++= =|.|-.+ .++.++|++|.++. .. ..+.++..+.++..|.+...+...+...
T Consensus 12 l~~k~vlITGas-----~gIG~~ia~~l~~~G~~V~~~~--r~------~~~~~~~~~~~~~~~~~~~~~~~~d~d~--- 75 (247)
T 3i1j_A 12 LKGRVILVTGAA-----RGIGAAAARAYAAHGASVVLLG--RT------EASLAEVSDQIKSAGQPQPLIIALNLEN--- 75 (247)
T ss_dssp TTTCEEEESSTT-----SHHHHHHHHHHHHTTCEEEEEE--SC------HHHHHHHHHHHHHTTSCCCEEEECCTTT---
T ss_pred CCCCEEEEeCCC-----ChHHHHHHHHHHHCCCEEEEEe--cC------HHHHHHHHHHHHhcCCCCceEEEecccc---
Confidence 346677777764 1334444 45678999865543 22 3344555555555664222333344311
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
-+.+.+.+.+.++.+++ ++|+++--
T Consensus 76 -----~~~~~~~~~~~~~~~~~g~id~lv~n 101 (247)
T 3i1j_A 76 -----ATAQQYRELAARVEHEFGRLDGLLHN 101 (247)
T ss_dssp -----CCHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred -----CCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 13345555555555544 68987754
No 166
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=24.84 E-value=2.2e+02 Score=22.15 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEecC
Q 025219 124 KSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
..+.+.|.++|++++||.+..=.
T Consensus 45 ~~i~~~l~~~i~~~~Pd~vaiE~ 67 (158)
T 1hjr_A 45 KLIYAGVTEIITQFQPDYFAIEQ 67 (158)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEee
Confidence 46677799999999999987643
No 167
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=24.83 E-value=2.5e+02 Score=24.82 Aligned_cols=88 Identities=11% Similarity=0.022 Sum_probs=54.3
Q ss_pred HHHHHHHHhCC-----CcEEEEEEeCCCCC--------C---chHHHHHHHHHHHHHcCCCCCcEEEccC-CCC-CCCc-
Q 025219 57 SPTINYLTSRR-----HNLHILCMSNGNAD--------G---MGNIRKDELHRACAVLKIPLEQVKVLDL-VDF-QDGF- 117 (256)
Q Consensus 57 Ggtl~~l~~~G-----~~V~vv~lT~G~~~--------~---~~~~R~~E~~~A~~~LGv~~~~~~~l~~-~d~-~dg~- 117 (256)
.+.+.++.++- .=|+=++++.|+.. | .+--+-.|..+-+..+|+ ..+..++. |+. +|..
T Consensus 21 ~~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgv~~~~~KD~~g 98 (337)
T 1w5q_A 21 DDFSRRLVRENVLTVDDLILPVFVLDGVNQRESIPSMPGVERLSIDQLLIEAEEWVALGI--PALALFPVTPVEKKSLDA 98 (337)
T ss_dssp SHHHHHHHCCCCCCGGGEEEEEEEESSSSCEEECTTSTTCEEEEHHHHHHHHHHHHHTTC--CEEEEEECCCGGGCBSSC
T ss_pred ChHHHHHHhcCCCCHHHceeeEEEecCCCCccccCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEecCCCcccCCccc
Confidence 34566666542 12667788888753 1 233344455556667999 46777776 432 3321
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
.+.|+++.++..-.+.|++.-||+++..|
T Consensus 99 s~A~~~~g~v~rair~iK~~~pdl~vitD 127 (337)
T 1w5q_A 99 AEAYNPEGIAQRATRALRERFPELGIITD 127 (337)
T ss_dssp GGGGCTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred CccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23567777887777888888899876544
No 168
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=24.72 E-value=2.5e+02 Score=26.30 Aligned_cols=92 Identities=11% Similarity=0.149 Sum_probs=57.7
Q ss_pred HHHHHHHHhCCCcEEEEEEeCCCC---C---------CchHHHH-------HHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219 57 SPTINYLTSRRHNLHILCMSNGNA---D---------GMGNIRK-------DELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (256)
Q Consensus 57 Ggtl~~l~~~G~~V~vv~lT~G~~---~---------~~~~~R~-------~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (256)
.+.|....+.|..|..|++-+.+. . ..+..|. +++.+.++.+|+ .++++. |
T Consensus 20 N~AL~~A~~~~~~vlpvfi~dp~~~~~~~~~~~~g~~~~g~~r~~Fl~~sL~~L~~~L~~~G~---~L~v~~------G- 89 (537)
T 3fy4_A 20 NPALEYASKGSEFMYPVFVIDPHYMESDPSAFSPGSSRAGVNRIRFLLESLKDLDSSLKKLGS---RLLVFK------G- 89 (537)
T ss_dssp CHHHHHHHTTCSCEEEEEEECHHHHSCCTTSSSSBCSSCBHHHHHHHHHHHHHHHHHHHHTTC---CCEEEE------S-
T ss_pred hHHHHHHHhcCCCEEEEEEeChhhhcccccccccccccCCHHHHHHHHHHHHHHHHHHHHcCC---ceEEEE------C-
Confidence 345666666777787777765321 0 1344443 678888888998 344432 1
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhh
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNG 169 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~ 169 (256)
+ ..+.|.+++++.+.+.|++. .+..++-+.--.++.++++.
T Consensus 90 ----~---~~~vl~~L~~~~~~~~V~~n----~~~~p~~~~RD~~v~~~l~~ 130 (537)
T 3fy4_A 90 ----E---PGEVLVRCLQEWKVKRLCFE----YDTDPYYQALDVKVKDYASS 130 (537)
T ss_dssp ----C---HHHHHHHHHTTSCEEEEEEC----CCCSHHHHHHHHHHHHHHHH
T ss_pred ----C---HHHHHHHHHHHcCCCEEEEe----ccccHHHHHHHHHHHHHHHH
Confidence 1 23457888889999999886 23456766666667766654
No 169
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=24.67 E-value=2.3e+02 Score=22.98 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=53.4
Q ss_pred cEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCE--EEec
Q 025219 69 NLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDL--IITF 145 (256)
Q Consensus 69 ~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~--V~t~ 145 (256)
++.++.... ........|.+-.+++++..|.+..++..... ..|+.+...+.+.+++++. +|+. |++.
T Consensus 134 ~i~~~~~~~-~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~a~~i~~~ 204 (306)
T 8abp_A 134 ESAVMAITA-NELDTARRRTTGSMDALKAAGFPEKQIYQVPT--------KSNDIPGAFDAANSMLVQHPEVKHWLIVGM 204 (306)
T ss_dssp GEEEEEEEC-TTSHHHHHHHHHHHHHHHHHTCCGGGEEEEEC--------SSSSHHHHHHHHHHHHTTCTTCSEEEEECS
T ss_pred ceEEEEecC-CCChHHHHHHHHHHHHHHhcCCCCcEEEeecc--------CCCChHHHHHHHHHHHHhCCCCceEEEEeC
Confidence 555554322 22234567889999999999875333332222 1245666777788888764 3565 6554
Q ss_pred CCCCCCCCchHHHHHHHHHHHHhhcCCC--ceeEEEe
Q 025219 146 DNYGVSGHCNHRDVHHGIWSYLNGTSER--NIEAWEL 180 (256)
Q Consensus 146 d~~g~d~H~DH~~v~~av~~a~~~~~~~--~~~~~e~ 180 (256)
.|..+ ..+.+|++..+.+ ++.+.-.
T Consensus 205 --------nD~~A--~g~~~al~~~g~~v~di~vvG~ 231 (306)
T 8abp_A 205 --------NDSTV--LGGVRATEGQGFKAADIIGIGI 231 (306)
T ss_dssp --------SHHHH--HHHHHHHHHTTCCGGGEEEEEE
T ss_pred --------CcHHH--HHHHHHHHHcCCCCCceEEEEe
Confidence 24333 4566677665543 6665543
No 170
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=24.46 E-value=1.5e+02 Score=27.20 Aligned_cols=78 Identities=14% Similarity=0.153 Sum_probs=48.6
Q ss_pred HHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC-C---------CCC-c-cc-cC-----
Q 025219 60 INYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD-F---------QDG-F-DK-LW----- 121 (256)
Q Consensus 60 l~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d-~---------~dg-~-~~-~~----- 121 (256)
+..+.++|.+|..+++-.|... + .+++++.|+.+|+ ..++++|..+ + +.+ . .. ..
T Consensus 31 a~~Lke~G~eViavt~d~Gq~~---E--le~A~~vA~~lGi--~~~~VvDl~eef~~~v~~p~i~~na~yeg~Y~~g~~l 103 (421)
T 1vl2_A 31 LKWLCEKGFDVIAYVANVGQKD---D--FVAIKEKALKTGA--SKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAI 103 (421)
T ss_dssp HHHHHHTTCEEEEEEEESSCCC---C--HHHHHHHHHHHTC--SEEEEEECHHHHHHHTHHHHHTTTCCBTTTBCCHHHH
T ss_pred HHHHHHCCCeEEEEEEEcCCHH---H--HHHHHHHHHHcCC--ceEEEEecHHHHHHhhhhHHHhcCCcccCceeCCCcc
Confidence 4455678999999999888531 1 3567788999999 3456666532 1 000 0 00 11
Q ss_pred ChHHHHHHHHHHHHhcCCCEEEe
Q 025219 122 NHKSLAKIVEEEVVNCSIDLIIT 144 (256)
Q Consensus 122 ~~~~l~~~l~~~i~~~~Pd~V~t 144 (256)
....+...+.++.++...|.|.+
T Consensus 104 ~Rp~i~~~l~~~A~~~Gad~IA~ 126 (421)
T 1vl2_A 104 ARPLIAKRQVEIAEKEGAQYVAH 126 (421)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEC
T ss_pred cHHHHHHHHHHHHHHcCCCEEEE
Confidence 12334566777778889999876
No 171
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=24.16 E-value=57 Score=25.83 Aligned_cols=41 Identities=12% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCC
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNG 78 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G 78 (256)
..+++++|.+.++=|.+-+-.....+.++|.+|.++..+.|
T Consensus 6 ~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~ 46 (177)
T 4hcj_A 6 KTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIG 46 (177)
T ss_dssp CCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSE
T ss_pred cCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 34466666555443333356788889999999998876655
No 172
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=24.12 E-value=88 Score=26.97 Aligned_cols=41 Identities=20% Similarity=0.048 Sum_probs=26.1
Q ss_pred CCcEEEEecCchhhhcchHHH-----HHHHHhCCCcEEEEEEeCCC
Q 025219 39 KKNVLLVIAHPDDESMFFSPT-----INYLTSRRHNLHILCMSNGN 79 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggt-----l~~l~~~G~~V~vv~lT~G~ 79 (256)
++|||+|+.+.--...|..++ ...|.++|++|++++...+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~ 47 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTPSHGR 47 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEEECTTC
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 578999997632222333333 34556789999999965543
No 173
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=24.10 E-value=69 Score=27.43 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=25.6
Q ss_pred CCCCcEEEEecCchhhh----cchHHHHHHHHhCCCcEEEEEEeCCC
Q 025219 37 GDKKNVLLVIAHPDDES----MFFSPTINYLTSRRHNLHILCMSNGN 79 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~----l~~Ggtl~~l~~~G~~V~vv~lT~G~ 79 (256)
...++||++++.+-+.. ..+-..+..|.+.|++|.+++...+.
T Consensus 18 ~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~ 64 (406)
T 2gek_A 18 GSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPH 64 (406)
T ss_dssp ---CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTT
T ss_pred CCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCcc
Confidence 45678999997754331 11112344556789999988876654
No 174
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=23.63 E-value=2.9e+02 Score=22.35 Aligned_cols=96 Identities=8% Similarity=0.188 Sum_probs=52.7
Q ss_pred HHHHhC-C--CcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025219 61 NYLTSR-R--HNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (256)
Q Consensus 61 ~~l~~~-G--~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (256)
..|.+. | ++ .+.+++..........|.+-.+++++.. |++ +...- ...|+.+.-.+.+.+++++
T Consensus 123 ~~L~~~~G~~~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~---~~~~~--------~~~~~~~~~~~~~~~ll~~ 190 (288)
T 1gud_A 123 SFIIDKLGAEGG-EVAIIEGKAGNASGEARRNGATEAFKKASQIK---LVASQ--------PADWDRIKALDVATNVLQR 190 (288)
T ss_dssp HHHHHHHGGGCE-EEEEEECSTTCHHHHHHHHHHHHHHHTCTTEE---EEEEE--------ECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCC-EEEEEeCCCCCchHhHHHHHHHHHHHhCCCcE---EEEee--------cCCccHHHHHHHHHHHHHh
Confidence 345566 7 43 4555543222223456888888888866 662 21110 0124555556667777766
Q ss_pred c-CCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC-CceeEE
Q 025219 137 C-SIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE-RNIEAW 178 (256)
Q Consensus 137 ~-~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~-~~~~~~ 178 (256)
. +||.||+.+ |. .+..+.+|++..+. +++.+.
T Consensus 191 ~~~~~ai~~~n--------D~--~A~g~~~al~~~G~~~dv~vv 224 (288)
T 1gud_A 191 NPNIKAIYCAN--------DT--MAMGVAQAVANAGKTGKVLVV 224 (288)
T ss_dssp CTTCCEEEESS--------HH--HHHHHHHHHHHTTCTTTSEEE
T ss_pred CCCceEEEECC--------Cc--hHHHHHHHHHhcCCCCCeEEE
Confidence 4 589999872 22 34556667665432 345544
No 175
>2pqp_A HD7A, histone deacetylase 7A; HDAC, structural genomics, structural genomics consortium, SGC; HET: TSN; 1.80A {Homo sapiens} PDB: 2pqo_A* 2nvr_A 3c0y_A 3c0z_A 3c10_A* 2vqm_A* 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A*
Probab=23.61 E-value=39 Score=31.05 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=21.1
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCCch
Q 025219 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (256)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (256)
.+.+..++++++||+|+.. -|.|.|.+
T Consensus 297 ~~~l~p~~~~F~PdlIvvs--aG~Da~~g 323 (421)
T 2pqp_A 297 RIVVMPIAREFSPDLVLVS--AGFDAAEG 323 (421)
T ss_dssp HHTHHHHHHHHCCSEEEEE--ECCTTBTT
T ss_pred HHHHHHHHHHhCCCEEEEe--CCcccccc
Confidence 3446677899999999987 68887764
No 176
>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}
Probab=23.40 E-value=3.2e+02 Score=22.66 Aligned_cols=86 Identities=7% Similarity=0.060 Sum_probs=46.9
Q ss_pred CCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
.++++|+.++= =|-|-.++ +++++|++|.++.... ...+.++..+..+..|. ++.++.. |..
T Consensus 48 ~~k~vlVTGas-----~GIG~aia~~la~~G~~V~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~-Dv~-- 110 (294)
T 3r3s_A 48 KDRKALVTGGD-----SGIGRAAAIAYAREGADVAINYLPA------EEEDAQQVKALIEECGR---KAVLLPG-DLS-- 110 (294)
T ss_dssp TTCEEEEETTT-----SHHHHHHHHHHHHTTCEEEEECCGG------GHHHHHHHHHHHHHTTC---CEEECCC-CTT--
T ss_pred CCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEeCCc------chhHHHHHHHHHHHcCC---cEEEEEe-cCC--
Confidence 46778888874 24455554 5678999876543221 12233444445555665 4444331 221
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 111 -----d~~~v~~~~~~~~~~~g~iD~lv~n 135 (294)
T 3r3s_A 111 -----DESFARSLVHKAREALGGLDILALV 135 (294)
T ss_dssp -----SHHHHHHHHHHHHHHHTCCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3455555555555554 68887754
No 177
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=23.39 E-value=49 Score=27.40 Aligned_cols=35 Identities=11% Similarity=0.071 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhcCCCE-EEecCCCCCCCCchHHHHHHHHHH
Q 025219 125 SLAKIVEEEVVNCSIDL-IITFDNYGVSGHCNHRDVHHGIWS 165 (256)
Q Consensus 125 ~l~~~l~~~i~~~~Pd~-V~t~d~~g~d~H~DH~~v~~av~~ 165 (256)
++.+.+.+.+...+++. ++|| .|+||........+
T Consensus 66 ~~~~~l~~~~~~~~i~~IilTH------~H~DH~gg~~~l~~ 101 (262)
T 3hnn_A 66 IYLEALQQTVNLKKLDYVILGH------FSPNRIPTFKALLE 101 (262)
T ss_dssp HHHHHHHHHSCGGGEEEEECSS------CCGGGHHHHHHHHH
T ss_pred HHHHHHHHhCChhhCCEEEECC------CCcchhchHHHHHH
Confidence 34444444433234554 5566 69999876554443
No 178
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=23.38 E-value=1.8e+02 Score=25.55 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=51.0
Q ss_pred CCCCcEEEEecCchhhhcchHHHHHHHH----hCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTINYLT----SRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVD 112 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~~l~----~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d 112 (256)
..++++++| ||. +--|||+...+ ++|.+...+++|-|-..+.+..|-++ -++ +.+.+.+--.
T Consensus 211 v~gk~viIV----DDi-i~TG~Tl~~a~~~L~~~Ga~~v~~~~tH~v~~~~a~e~l~~-------~~i--~~vv~t~tip 276 (326)
T 3s5j_B 211 VKDRVAILV----DDM-ADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINN-------ACF--EAVVVTNTIP 276 (326)
T ss_dssp CTTSEEEEE----EEE-ESSCHHHHHHHHHHHHTTCSEEEEEEEEECCCTTHHHHHHH-------SCC--SEEEEETTSC
T ss_pred CCCCEEEEE----ccc-cCCcHHHHHHHHHHHHcCCCEEEEEEEecccCchHHHHHhh-------CCC--CEEEEecCCC
Confidence 456777777 665 57899988765 57988777777765433323333222 356 5677666422
Q ss_pred CCC------CccccCChHHHHHHHHHHHHhcCCCEEEec
Q 025219 113 FQD------GFDKLWNHKSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 113 ~~d------g~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
... .....--...+.+.|.++........+|.+
T Consensus 277 ~~~~~~~~~k~~~lsva~lla~aI~~i~~~~svs~lf~~ 315 (326)
T 3s5j_B 277 QEDKMKHCSKIQVIDISMILAEAIRRTHNGESVSYLFSH 315 (326)
T ss_dssp CHHHHHTCTTEEEECCHHHHHHHHHHHHHTCCSGGGGTC
T ss_pred ChhhhccCCCeEEEEcHHHHHHHHHHHHcCCCHHHHhCc
Confidence 110 000010113455555555555555555554
No 179
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=23.15 E-value=76 Score=23.44 Aligned_cols=55 Identities=22% Similarity=0.246 Sum_probs=35.1
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccC
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDL 110 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~ 110 (256)
++.|||+| ||+..-+-.+-..+.+.|++|. -+.++| +|+.+.++.-.. ++.++|.
T Consensus 7 r~~rILiV----dD~~~~~~~l~~~L~~~G~~v~-~~a~~g----------~eAl~~~~~~~~---DlvllDi 61 (123)
T 2lpm_A 7 RRLRVLVV----EDESMIAMLIEDTLCELGHEVA-ATASRM----------QEALDIARKGQF---DIAIIDV 61 (123)
T ss_dssp CCCCEEEE----SSSTTTSHHHHHHHHHHCCCCC-BCSCCH----------HHHHHHHHHCCS---SEEEECS
T ss_pred CCCEEEEE----eCCHHHHHHHHHHHHHCCCEEE-EEECCH----------HHHHHHHHhCCC---CEEEEec
Confidence 35689998 8888777777667777898852 133444 344444444333 6888875
No 180
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=22.94 E-value=54 Score=24.17 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=29.3
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeC--CCCCCchHHHHHHHHHH-HHHcCCCCCcEE
Q 025219 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSN--GNADGMGNIRKDELHRA-CAVLKIPLEQVK 106 (256)
Q Consensus 41 ~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~--G~~~~~~~~R~~E~~~A-~~~LGv~~~~~~ 106 (256)
+.++|.-||++ .|.+||+ .....++.++. |-.....+.=.+++.++ .+.||+++++++
T Consensus 36 ~~~~V~~~~~~-~~~~gg~-------~dp~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~ 96 (125)
T 2wkb_A 36 AYIMSNYDYQK-NLRFSGS-------NEGYCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVY 96 (125)
T ss_dssp TTCEEEEEECT-TCEETTB-------CSSCEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred HHEEEEEEcCC-ceEeCCC-------CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEE
Confidence 35556667655 4667775 13444444442 22222223333454444 457999998865
No 181
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=22.54 E-value=3e+02 Score=22.11 Aligned_cols=96 Identities=9% Similarity=0.141 Sum_probs=51.7
Q ss_pred HHHhC-CCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-C
Q 025219 62 YLTSR-RHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-S 138 (256)
Q Consensus 62 ~l~~~-G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~ 138 (256)
.|.+. |..-.+.+++..........|.+-.+++++.. |++ +..... ..|+.+...+.+.+++++. +
T Consensus 115 ~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~---~~~~~~--------~~~~~~~~~~~~~~ll~~~~~ 183 (283)
T 2ioy_A 115 FIAKALKGKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIK---IVAKQA--------ADFDRSKGLSVMENILQAQPK 183 (283)
T ss_dssp HHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEE---EEEEEE--------CTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCE---EEeecc--------CCCCHHHHHHHHHHHHHhCCC
Confidence 44555 52234555553322223456777788888776 651 211100 1244555556667777654 5
Q ss_pred CCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEE
Q 025219 139 IDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAW 178 (256)
Q Consensus 139 Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~ 178 (256)
|+.||+.+ | ..+..+.++++..+.+++.+.
T Consensus 184 ~~ai~~~n--------D--~~A~g~~~al~~~G~~di~vi 213 (283)
T 2ioy_A 184 IDAVFAQN--------D--EMALGAIKAIEAANRQGIIVV 213 (283)
T ss_dssp CCEEEESS--------H--HHHHHHHHHHHHTTCCCCEEE
T ss_pred ccEEEECC--------c--hHHHHHHHHHHHCCCCCcEEE
Confidence 89999873 2 234556677765443455543
No 182
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}
Probab=22.28 E-value=2.7e+02 Score=22.43 Aligned_cols=87 Identities=16% Similarity=0.131 Sum_probs=45.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++=- -|.|-.++ ++.++|++|.++. .. ..+.++..+..+..+- .++.++.. |..
T Consensus 20 l~~k~vlITGasg----~GIG~~~a~~l~~~G~~V~~~~--r~------~~~~~~~~~~l~~~~~--~~~~~~~~-Dl~- 83 (266)
T 3o38_A 20 LKGKVVLVTAAAG----TGIGSTTARRALLEGADVVISD--YH------ERRLGETRDQLADLGL--GRVEAVVC-DVT- 83 (266)
T ss_dssp TTTCEEEESSCSS----SSHHHHHHHHHHHTTCEEEEEE--SC------HHHHHHHHHHHHTTCS--SCEEEEEC-CTT-
T ss_pred CCCCEEEEECCCC----CchHHHHHHHHHHCCCEEEEec--CC------HHHHHHHHHHHHhcCC--CceEEEEe-CCC-
Confidence 4567788887631 24555554 5678999865443 21 2233444444433442 24444332 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 84 ------~~~~v~~~~~~~~~~~g~id~li~~ 108 (266)
T 3o38_A 84 ------STEAVDALITQTVEKAGRLDVLVNN 108 (266)
T ss_dssp ------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CHHHHHHHHHHHHHHhCCCcEEEEC
Confidence 3345555555555554 67887754
No 183
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=22.03 E-value=98 Score=23.07 Aligned_cols=41 Identities=17% Similarity=0.301 Sum_probs=26.4
Q ss_pred CCCcEEEEecCc--hhhhcchHHHHHHH-HhCCCcEEEEEEeCC
Q 025219 38 DKKNVLLVIAHP--DDESMFFSPTINYL-TSRRHNLHILCMSNG 78 (256)
Q Consensus 38 ~~~~vLvv~aHP--DDE~l~~Ggtl~~l-~~~G~~V~vv~lT~G 78 (256)
..+++++|.-++ |-+....+-.++.. .+.|++|.+....+|
T Consensus 14 ~~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dG 57 (134)
T 3mc3_A 14 QXXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXG 57 (134)
T ss_dssp CCCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTG
T ss_pred ccceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCc
Confidence 356777777776 55666666666653 468999974444444
No 184
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=21.98 E-value=2.7e+02 Score=24.34 Aligned_cols=83 Identities=8% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHhCC--CcEEEEEEeCCCC-CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHh
Q 025219 60 INYLTSRR--HNLHILCMSNGNA-DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVN 136 (256)
Q Consensus 60 l~~l~~~G--~~V~vv~lT~G~~-~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~ 136 (256)
++++.++| ....+.++--|+. ....-.|.+ .++|+.+|+ +.....+|. .+++.+.|.++=++
T Consensus 25 v~~l~~~~~~~~P~Lavilvg~dpas~~Yv~~k--~k~~~~~Gi---~~~~~~l~~----------~~~l~~~i~~lN~d 89 (320)
T 1edz_A 25 VEEYKKTHNGQGPLLVGFLANNDPAAKMYATWT--QKTSESMGF---RYDLRVIED----------KDFLEEAIIQANGD 89 (320)
T ss_dssp HHHHHHHTTTCCCEEEEEECCCCHHHHHHHHHH--HHHHHHHTC---EEEEEECSS----------GGGHHHHHHHHHHC
T ss_pred HHHHHHcCCCCCCeEEEEEECCchhHHHHHHHH--HHHHHHcCC---EEEEEECCC----------hHHHHHHHHHHcCC
Confidence 44555555 4455656555543 233344544 489999999 445555542 14577777777776
Q ss_pred cCCCEEEecCCCCCCCCchHHHH
Q 025219 137 CSIDLIITFDNYGVSGHCNHRDV 159 (256)
Q Consensus 137 ~~Pd~V~t~d~~g~d~H~DH~~v 159 (256)
-+.|=|+.+ .+.-.|.|-..+
T Consensus 90 ~~v~GIlvq--lPlp~~~~~~~i 110 (320)
T 1edz_A 90 DSVNGIMVY--FPVFGNAQDQYL 110 (320)
T ss_dssp TTCCEEEEC--SCSSSSHHHHHH
T ss_pred CCCCEEEEe--CCCCCCCCHHHH
Confidence 667778888 444466665543
No 185
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=21.97 E-value=3.2e+02 Score=22.18 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=54.1
Q ss_pred hhhcchHHHHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHH
Q 025219 51 DESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIV 130 (256)
Q Consensus 51 DE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l 130 (256)
|-.++|-|-...+.+.|....+++ |+.+... .|..+..+..|+ . +..+|.-+|. .+....|
T Consensus 20 ~~~i~~DgGa~~l~~~g~~Pd~iv---GDfDSi~----~~~~~~~~~~~~---~--i~~~~~eKD~-------TD~e~Al 80 (218)
T 3ihk_A 20 DYFVGIDKGSSFLLKNQLPLDLAI---GDFDSVS----AEEFKQIKAKAK---K--LVMAPAEKND-------TDTELAL 80 (218)
T ss_dssp SEEEEETHHHHHHHHTTCCCSEEE---ECCTTSC----HHHHHHHHTTCS---S--EEECCSSCSS-------CHHHHHH
T ss_pred CEEEEEcHHHHHHHHcCCCCCEEE---eCcccCC----HHHHHHHHhcCC---e--EEECCCCCCC-------CHHHHHH
Confidence 567888888889999998766555 6665543 222333444565 2 2333333332 1233445
Q ss_pred HHHHHhcCCCEEEecCCCCCCCCchHHHHHHH
Q 025219 131 EEEVVNCSIDLIITFDNYGVSGHCNHRDVHHG 162 (256)
Q Consensus 131 ~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~a 162 (256)
..++++..++-|+.. .+-.+-.||....-.
T Consensus 81 ~~a~~~~~~~~I~i~--Ga~GGR~DH~lani~ 110 (218)
T 3ihk_A 81 KTIFDCFGRVEIIVF--GAFGGRIDHMLSNIF 110 (218)
T ss_dssp HHHHHHTSSCEEEEE--SCSSSCHHHHHHHHT
T ss_pred HHHHHhCCCCEEEEE--CCCCCchhhHHHHHH
Confidence 555555567777777 445689999776543
No 186
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=21.95 E-value=3.3e+02 Score=24.11 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=55.2
Q ss_pred HHHHHHHhCC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCC---CCCCc-
Q 025219 58 PTINYLTSRR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVD---FQDGF- 117 (256)
Q Consensus 58 gtl~~l~~~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d---~~dg~- 117 (256)
+.+.++.++- .=++=++++.|... +.+--+-.|..+-+..+|+ ..+..++.|+ .+|..
T Consensus 25 ~~~R~lv~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~lGi--~~v~LFgv~~~~~~KD~~g 102 (342)
T 1h7n_A 25 PLLRQWQSERQLTKNMLIFPLFISDNPDDFTEIDSLPNINRIGVNRLKDYLKPLVAKGL--RSVILFGVPLIPGTKDPVG 102 (342)
T ss_dssp HHHHHHTCSSCCCGGGEEEEEEEESSTTCEEECTTSTTCEEECHHHHHHHHHHHHHTTC--CEEEEEEECCSTTCCBTTC
T ss_pred HHHHHHHhcCcCCHHHceeeEEEecCCCCceeCCCCCCceeeCHHHHHHHHHHHHHCCC--CEEEEecccCccCCCCccc
Confidence 5677777542 12677888888753 1233444555556677999 4576667643 23322
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
.+.|+.+.++.+-.+.|++.-||+++..|
T Consensus 103 s~A~~~~g~v~rair~iK~~~pdl~VitD 131 (342)
T 1h7n_A 103 TAADDPAGPVIQGIKFIREYFPELYIICD 131 (342)
T ss_dssp GGGGCTTSHHHHHHHHHHHHCTTSEEEEE
T ss_pred cccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23467777777777788887899877544
No 187
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=21.92 E-value=3.4e+02 Score=22.46 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=57.0
Q ss_pred chhhhcchHHHH-HHHHh--CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHc-CCCCCcEEEccCCCCCCCccccCChH
Q 025219 49 PDDESMFFSPTI-NYLTS--RRHNLHILCMSNGNADGMGNIRKDELHRACAVL-KIPLEQVKVLDLVDFQDGFDKLWNHK 124 (256)
Q Consensus 49 PDDE~l~~Ggtl-~~l~~--~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~L-Gv~~~~~~~l~~~d~~dg~~~~~~~~ 124 (256)
+|++.. |-.+ ..|.+ .|++ .+.+++..........|.+-.+++++.. |++ +...-. ..|+.+
T Consensus 116 ~D~~~~--g~~a~~~L~~~~~G~~-~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~---~~~~~~--------~~~~~~ 181 (332)
T 2rjo_A 116 YDGVAY--GEETATQLFKSMGGKG-GVVALGGIFSNVPAIERKAGLDAALKKFPGIQ---LLDFQV--------ADWNSQ 181 (332)
T ss_dssp CCHHHH--HHHHHHHHHHHTTTCE-EEEEEECCTTCHHHHHHHHHHHHHHHTCTTEE---EEEEEE--------CTTCHH
T ss_pred cChHHH--HHHHHHHHHHHcCCCC-eEEEEECCCCCccHHHHHHHHHHHHHhCCCcE---EEeecc--------CCCCHH
Confidence 455542 2223 34455 5875 3444543322234567888899999988 772 211100 123455
Q ss_pred HHHHHHHHHHHh--cCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC-CceeEE
Q 025219 125 SLAKIVEEEVVN--CSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE-RNIEAW 178 (256)
Q Consensus 125 ~l~~~l~~~i~~--~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~-~~~~~~ 178 (256)
...+.+.+++++ -+||.||+.+ |..+ ..+.++++..+. +++.+.
T Consensus 182 ~~~~~~~~ll~~~~~~~~aI~~~n--------d~~A--~g~~~al~~~G~~~di~vv 228 (332)
T 2rjo_A 182 KAFPIMQAWMTRFNSKIKGVWAAN--------DDMA--LGAIEALRAEGLAGQIPVT 228 (332)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEESS--------HHHH--HHHHHHHHHTTCBTTBCEE
T ss_pred HHHHHHHHHHHhcCCCeeEEEECC--------CchH--HHHHHHHHHcCCCCCCEEE
Confidence 556667777775 3689998862 3333 345666655432 245444
No 188
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.87 E-value=27 Score=31.72 Aligned_cols=36 Identities=11% Similarity=0.041 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhcCCCE-EEecCCCCCCCCchHHHHHHHHHH
Q 025219 124 KSLAKIVEEEVVNCSIDL-IITFDNYGVSGHCNHRDVHHGIWS 165 (256)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~-V~t~d~~g~d~H~DH~~v~~av~~ 165 (256)
+++.+.|.+++...++|. |+|| .|+||........+
T Consensus 75 ~~~l~~l~~~i~~~~IdyIi~TH------~h~DH~G~l~~l~~ 111 (410)
T 4dik_A 75 KEFIDALSKIVDPKEITHIIVNH------TEPDASGSLPATLK 111 (410)
T ss_dssp HHHHHHHTTTSCGGGCCEEECSC------CCHHHHTTHHHHHH
T ss_pred HHHHHHHHHhcCcccCCEEEeCc------CCcchhhhHHHHHH
Confidence 456666666655556774 5555 69999865444433
No 189
>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*
Probab=21.72 E-value=3.3e+02 Score=22.58 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=44.2
Q ss_pred CCCCcEEEEecCchhhhcchHH-HHHHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSP-TINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Gg-tl~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++=- .-|.|- +..+++++|++|.++.-+. ...++..+.++..|- ......|..
T Consensus 28 l~~k~vlVTGasg---~~GIG~~ia~~la~~G~~V~~~~r~~--------~~~~~~~~~~~~~~~--~~~~~~Dv~---- 90 (296)
T 3k31_A 28 MEGKKGVIIGVAN---DKSLAWGIAKAVCAQGAEVALTYLSE--------TFKKRVDPLAESLGV--KLTVPCDVS---- 90 (296)
T ss_dssp TTTCEEEEECCCS---TTSHHHHHHHHHHHTTCEEEEEESSG--------GGHHHHHHHHHHHTC--CEEEECCTT----
T ss_pred cCCCEEEEEeCCC---CCCHHHHHHHHHHHCCCEEEEEeCCh--------HHHHHHHHHHHhcCC--eEEEEcCCC----
Confidence 3467788887621 013443 4556778999876554321 112223333344453 223334432
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 91 ------d~~~v~~~~~~~~~~~g~iD~lVnn 115 (296)
T 3k31_A 91 ------DAESVDNMFKVLAEEWGSLDFVVHA 115 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHSCCSEEEEC
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3355555566665554 68988754
No 190
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=21.55 E-value=2.7e+02 Score=21.14 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=23.3
Q ss_pred CCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEE
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCM 75 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~l 75 (256)
...|||+++ |=.+.|.++.+.+.......|.-...
T Consensus 19 ~~prVl~iG---DSit~G~~~~l~~~l~~~~~v~~~~~ 53 (200)
T 4h08_A 19 DLPHVLLIG---NSITRGYYGKVEAALKEKAYVGRLSN 53 (200)
T ss_dssp SSCEEEEEE---SHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCCeEEEEc---hhHHhhhHHHHHHHhccCCeEEEEec
Confidence 344799986 66777888888777655555544433
No 191
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=21.45 E-value=42 Score=24.10 Aligned_cols=58 Identities=14% Similarity=0.147 Sum_probs=28.1
Q ss_pred cEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEe-CC-CCCCchHHHHHHHHH-HHHHcCCCCCcEE
Q 025219 41 NVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMS-NG-NADGMGNIRKDELHR-ACAVLKIPLEQVK 106 (256)
Q Consensus 41 ~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT-~G-~~~~~~~~R~~E~~~-A~~~LGv~~~~~~ 106 (256)
+.++|.-||++. |.+||+ . ....++.++ .| -.....+.-.+++.+ ..+.||+++++++
T Consensus 35 ~~~~v~~~~~~~-~~~~g~-----~--~~~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~ 95 (113)
T 1hfo_A 35 SYVAVHINTDQQ-LSFGGS-----T--NPAAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMY 95 (113)
T ss_dssp GGCEEEEECSCE-EEETTB-----C--SSCEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred HHEEEEEeCCcc-EEecCC-----C--CCeEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEE
Confidence 344556676554 567774 1 344444443 22 111111111233333 3456899988865
No 192
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=20.99 E-value=3.5e+02 Score=22.21 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=44.7
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl-~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++=- |-|-.+ .+++++|++|.++...+ ..+.++..+.++..|. ++.++.. |..
T Consensus 27 ~~~k~~lVTGas~-----GIG~aia~~la~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv~- 89 (280)
T 4da9_A 27 KARPVAIVTGGRR-----GIGLGIARALAASGFDIAITGIGD-------AEGVAPVIAELSGLGA---RVIFLRA-DLA- 89 (280)
T ss_dssp CCCCEEEEETTTS-----HHHHHHHHHHHHTTCEEEEEESCC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred cCCCEEEEecCCC-----HHHHHHHHHHHHCCCeEEEEeCCC-------HHHHHHHHHHHHhcCC---cEEEEEe-cCC-
Confidence 3456788877642 344444 45678999876554222 2233444444444554 3444321 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 90 ------d~~~v~~~~~~~~~~~g~iD~lvnn 114 (280)
T 4da9_A 90 ------DLSSHQATVDAVVAEFGRIDCLVNN 114 (280)
T ss_dssp ------SGGGHHHHHHHHHHHHSCCCEEEEE
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 2234445555555554 68988755
No 193
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=20.83 E-value=1.9e+02 Score=25.53 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=49.6
Q ss_pred HHHHHHHh-CC-----CcEEEEEEeCCCCC-----------CchHHHHHHHHHHHHHcCCCCCcEEEccCCCC--CCCc-
Q 025219 58 PTINYLTS-RR-----HNLHILCMSNGNAD-----------GMGNIRKDELHRACAVLKIPLEQVKVLDLVDF--QDGF- 117 (256)
Q Consensus 58 gtl~~l~~-~G-----~~V~vv~lT~G~~~-----------~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~--~dg~- 117 (256)
+.+.++.+ +- .=++=++++.|... +.+--+-.|..+-+..+|+ ..+..++.|+. +|..
T Consensus 14 ~~~R~lv~~Et~L~~~dLI~PlFV~eg~~~~~~I~SMPGv~r~sid~l~~~~~~~~~~Gi--~~v~LFgvp~~~~Kd~~g 91 (330)
T 1pv8_A 14 PLLRAWQTATTTLNASNLIYPIFVTDVPDDIQPITSLPGVARYGVKRLEEMLRPLVEEGL--RCVLIFGVPSRVPKDERG 91 (330)
T ss_dssp HHHHHHHTTTTCCCGGGEEEEEEECSCTTCEEECSSSTTCEEECHHHHHHHHHHHHHHTC--CEEEEEECC---------
T ss_pred HHHHHHHhcCCccCHHHceeeEEEecCCCCccccCCCCCceeecHHHHHHHHHHHHHCCC--CEEEEecCCcccCCCccc
Confidence 46677775 22 12667788888652 1233444555556667899 56777777754 3322
Q ss_pred cccCChHHHHHHHHHHHHhcCCCEEEecC
Q 025219 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFD 146 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d 146 (256)
.+.|+++.++.+-.+.|++.-||+++..|
T Consensus 92 s~A~~~~g~v~~air~iK~~~pdl~vitD 120 (330)
T 1pv8_A 92 SAADSEESPAIEAIHLLRKTFPNLLVACD 120 (330)
T ss_dssp -----CCSHHHHHHHHHHHHSTTSEEEEE
T ss_pred cccCCCCChHHHHHHHHHHHCCCeEEEEe
Confidence 23466777777777777877899876544
No 194
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=20.78 E-value=1.3e+02 Score=23.44 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCCh---HHHHHHHHHHHHhcCCCEEEec
Q 025219 84 GNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNH---KSLAKIVEEEVVNCSIDLIITF 145 (256)
Q Consensus 84 ~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~---~~l~~~l~~~i~~~~Pd~V~t~ 145 (256)
...-.+|....++.+|+ +++....|.-+.+.. -++ .++.+.+.+.++....++.-+|
T Consensus 57 v~~av~eI~~~a~kv~~--~~ivlYPyAHLSs~L---a~P~~A~~iL~~le~~L~~~g~eV~raP 116 (143)
T 2hl0_A 57 SLKAIEEISKVAEQVKA--ENVFVYPFAHLSSEL---AKPSVAMDILNRVYQGLKERGFNVGKAP 116 (143)
T ss_dssp HHHHHHHHHHHHHHHTC--CEEEEEECGGGCSSB---CCHHHHHHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHHHHhcCC--CEEEEeccccccCcc---CChHHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 34445889999999999 778777765433222 133 3556667777777667777666
No 195
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B}
Probab=20.75 E-value=63 Score=29.07 Aligned_cols=28 Identities=11% Similarity=0.042 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCCchH
Q 025219 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156 (256)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH 156 (256)
.+.+...+++++||+|+.. -|.|.|.+-
T Consensus 280 ~~~~l~~l~~f~PdlIvvs--aG~Da~~~D 307 (362)
T 3men_A 280 VDDALRELRRFAPDALVLS--LGFDVYRDD 307 (362)
T ss_dssp HHHHHHHHHHHCCSEEEEE--ECSTTBTTC
T ss_pred HHHHHHHHHhcCCCEEEEE--CcccCcCCC
Confidence 3344457899999999987 566666543
No 196
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2
Probab=20.71 E-value=3.3e+02 Score=21.76 Aligned_cols=78 Identities=15% Similarity=0.161 Sum_probs=41.5
Q ss_pred CCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219 39 KKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117 (256)
Q Consensus 39 ~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~ 117 (256)
++++|+.++- =|.|-.++ ++.++|++|.++. .. . ..+.+..+.+|+ .....|..
T Consensus 5 ~k~vlVTGas-----~giG~~ia~~l~~~G~~V~~~~--r~------~---~~~~~~~~~~~~---~~~~~D~~------ 59 (245)
T 1uls_A 5 DKAVLITGAA-----HGIGRATLELFAKEGARLVACD--IE------E---GPLREAAEAVGA---HPVVMDVA------ 59 (245)
T ss_dssp TCEEEEESTT-----SHHHHHHHHHHHHTTCEEEEEE--SC------H---HHHHHHHHTTTC---EEEECCTT------
T ss_pred CCEEEEECCC-----CHHHHHHHHHHHHCCCEEEEEe--CC------H---HHHHHHHHHcCC---EEEEecCC------
Confidence 4678888764 24454444 5667899876543 21 1 122233344454 33334432
Q ss_pred cccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 118 DKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 118 ~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 60 ----~~~~~~~~~~~~~~~~g~id~lvn~ 84 (245)
T 1uls_A 60 ----DPASVERGFAEALAHLGRLDGVVHY 84 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHSSCCEEEEC
T ss_pred ----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 2345555556665555 57888754
No 197
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=20.64 E-value=3.5e+02 Score=22.14 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=41.7
Q ss_pred CCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl-~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
.++++|+.++= =|-|-.+ .+++++|++|.++. . +.+.+.+.++.+|. ++.++.. |..
T Consensus 27 ~~k~~lVTGas-----~GIG~aia~~la~~G~~V~~~~--r---------~~~~~~~~~~~~~~---~~~~~~~-Dv~-- 84 (272)
T 4dyv_A 27 GKKIAIVTGAG-----SGVGRAVAVALAGAGYGVALAG--R---------RLDALQETAAEIGD---DALCVPT-DVT-- 84 (272)
T ss_dssp -CCEEEETTTT-----SHHHHHHHHHHHHTTCEEEEEE--S---------CHHHHHHHHHHHTS---CCEEEEC-CTT--
T ss_pred CCCEEEEeCCC-----cHHHHHHHHHHHHCCCEEEEEE--C---------CHHHHHHHHHHhCC---CeEEEEe-cCC--
Confidence 45667777664 2344444 45678999865542 2 12233444555553 3333321 211
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++--
T Consensus 85 -----d~~~v~~~~~~~~~~~g~iD~lVnn 109 (272)
T 4dyv_A 85 -----DPDSVRALFTATVEKFGRVDVLFNN 109 (272)
T ss_dssp -----SHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3345555555555555 68988754
No 198
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=20.51 E-value=3.6e+02 Score=22.23 Aligned_cols=94 Identities=9% Similarity=-0.020 Sum_probs=51.4
Q ss_pred CCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhc-CCCEEEe
Q 025219 66 RRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNC-SIDLIIT 144 (256)
Q Consensus 66 ~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t 144 (256)
.|+. .+++++..........|.+-..++++..+. .+.+.... ...|+.+...+.+.+++++. +|+.|++
T Consensus 126 ~g~~-~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~ll~~~~~~~aI~~ 195 (316)
T 1tjy_A 126 KEKA-KVAFFYSSPTVTDQNQWVKEAKAKISQEHP---GWEIVTTQ------FGYNDATKSLQTAEGIIKAYPDLDAIIA 195 (316)
T ss_dssp SSSE-EEEEEESCSSCHHHHHHHHHHHHHHHHHCT---TEEEEEEE------ECTTCHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCCC-EEEEEEcCCCChhHHHHHHHHHHHHHhhCC---CcEEEEec------cCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 4765 455554322222356788888888865532 22222210 11366677777788888775 5889998
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHhhcCCCceeEEE
Q 025219 145 FDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWE 179 (256)
Q Consensus 145 ~d~~g~d~H~DH~~v~~av~~a~~~~~~~~~~~~e 179 (256)
.+ |. .+..+.+|++..+..++.+.-
T Consensus 196 ~n--------D~--~A~g~~~al~~~G~~dv~VvG 220 (316)
T 1tjy_A 196 PD--------AN--ALPAAAQAAENLKRNNLAIVG 220 (316)
T ss_dssp CS--------TT--HHHHHHHHHHHTTCCSCEEEE
T ss_pred CC--------Cc--cHHHHHHHHHHcCCCCEEEEE
Confidence 73 22 334456666544323454443
No 199
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=20.28 E-value=3.5e+02 Score=21.91 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=44.1
Q ss_pred CCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219 38 DKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG 116 (256)
Q Consensus 38 ~~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg 116 (256)
.++++|+.++= =|.|-.++ +++++|++|.+++..+ ..+.++..+.++..|. ++.++.. |..
T Consensus 25 ~~k~vlITGas-----~gIG~a~a~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dl~-- 86 (272)
T 4e3z_A 25 DTPVVLVTGGS-----RGIGAAVCRLAARQGWRVGVNYAAN-------REAADAVVAAITESGG---EAVAIPG-DVG-- 86 (272)
T ss_dssp CSCEEEETTTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---EEEEEEC-CTT--
T ss_pred CCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEcCCC-------hhHHHHHHHHHHhcCC---cEEEEEc-CCC--
Confidence 45567766653 23444444 5668999875543222 2334444455555554 4444332 221
Q ss_pred ccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 117 FDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 117 ~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 87 -----~~~~v~~~~~~~~~~~g~id~li~n 111 (272)
T 4e3z_A 87 -----NAADIAAMFSAVDRQFGRLDGLVNN 111 (272)
T ss_dssp -----CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred -----CHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 3345555555555554 68887754
No 200
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A*
Probab=20.28 E-value=58 Score=28.99 Aligned_cols=27 Identities=11% Similarity=0.094 Sum_probs=18.8
Q ss_pred HHHHHHHHHhcCCCEEEecCCCCCCCCch
Q 025219 127 AKIVEEEVVNCSIDLIITFDNYGVSGHCN 155 (256)
Q Consensus 127 ~~~l~~~i~~~~Pd~V~t~d~~g~d~H~D 155 (256)
.+.+...+++++||+|+.. -|.|.|.+
T Consensus 262 ~~~~l~~l~~f~Pd~ivvs--aG~D~~~~ 288 (341)
T 3q9b_A 262 LTDSLKRIAAFGAEAIVVS--LGVDTFEQ 288 (341)
T ss_dssp HHHHHHHHHHHTCSCEEEE--ECCTTBTT
T ss_pred HHHHHHHHHhhCCCEEEEe--CCccccCC
Confidence 3344456899999999986 56665543
No 201
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A
Probab=20.20 E-value=2.6e+02 Score=21.98 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred CcEEEEEEeCCCCCC------chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCE
Q 025219 68 HNLHILCMSNGNADG------MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDL 141 (256)
Q Consensus 68 ~~V~vv~lT~G~~~~------~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~ 141 (256)
..+-++-+-++.... ...++++|..+..+.+.-. +.++.||-. +..++.+++++.|.+....-..++
T Consensus 35 ~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg~~il~~i~~~-~~vI~LD~~------Gk~~sS~~fA~~l~~~~~~g~~~i 107 (163)
T 4fak_A 35 TKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQ-STVITLEIQ------GKMLSSEGLAQELNQRMTQGQSDF 107 (163)
T ss_dssp CEEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTCCTT-SEEEEEEEE------EEECCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEecccccccccchhhHHHHHHHHHHHHHHhCCCC-CEEEEEcCC------CCcCCHHHHHHHHHHHHhcCCcce
Confidence 467778877654321 1345677877777777532 245566631 245788899999999887777888
Q ss_pred EEecCCCCCCCCchH
Q 025219 142 IITFDNYGVSGHCNH 156 (256)
Q Consensus 142 V~t~d~~g~d~H~DH 156 (256)
+|.- .|.+|+.+-
T Consensus 108 ~FvI--GG~~Gl~~~ 120 (163)
T 4fak_A 108 VFVI--GGSNGLHKD 120 (163)
T ss_dssp EEEE--CBTTBCCHH
T ss_pred EEEE--ECCCccCHH
Confidence 8887 677787763
No 202
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=20.18 E-value=3.5e+02 Score=21.93 Aligned_cols=86 Identities=10% Similarity=0.122 Sum_probs=46.8
Q ss_pred CCCCcEEEEecCchhhhcchHHHH-HHHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTI-NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl-~~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++= =|-|-.+ .++.++|++|.++...+ ..+.++..+.++..|. ++.++.. |..
T Consensus 16 l~~k~~lVTGas-----~gIG~aia~~l~~~G~~V~~~~~~~-------~~~~~~~~~~~~~~~~---~~~~~~~-Dv~- 78 (270)
T 3is3_A 16 LDGKVALVTGSG-----RGIGAAVAVHLGRLGAKVVVNYANS-------TKDAEKVVSEIKALGS---DAIAIKA-DIR- 78 (270)
T ss_dssp CTTCEEEESCTT-----SHHHHHHHHHHHHTTCEEEEEESSC-------HHHHHHHHHHHHHTTC---CEEEEEC-CTT-
T ss_pred cCCCEEEEECCC-----chHHHHHHHHHHHCCCEEEEEcCCC-------HHHHHHHHHHHHhcCC---cEEEEEc-CCC-
Confidence 456778877764 2444444 45678999876543222 2333444455555665 3444321 221
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 79 ------~~~~v~~~~~~~~~~~g~id~lvnn 103 (270)
T 3is3_A 79 ------QVPEIVKLFDQAVAHFGHLDIAVSN 103 (270)
T ss_dssp ------SHHHHHHHHHHHHHHHSCCCEEECC
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3455566666666655 57887644
No 203
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=20.13 E-value=3.6e+02 Score=22.06 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=45.1
Q ss_pred CCCCcEEEEecCchhhhcchHHHHH-HHHhCCCcEEEEEEeCCCCCCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCC
Q 025219 37 GDKKNVLLVIAHPDDESMFFSPTIN-YLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQD 115 (256)
Q Consensus 37 ~~~~~vLvv~aHPDDE~l~~Ggtl~-~l~~~G~~V~vv~lT~G~~~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~d 115 (256)
..++++|+.++= =|-|-.++ +++++|++|.++. +. ..+.+|..+.++..|... .....|..
T Consensus 26 l~~k~~lVTGas-----~GIG~aia~~la~~G~~V~~~~--r~------~~~~~~~~~~~~~~~~~~-~~~~~Dv~---- 87 (270)
T 3ftp_A 26 LDKQVAIVTGAS-----RGIGRAIALELARRGAMVIGTA--TT------EAGAEGIGAAFKQAGLEG-RGAVLNVN---- 87 (270)
T ss_dssp TTTCEEEETTCS-----SHHHHHHHHHHHHTTCEEEEEE--SS------HHHHHHHHHHHHHHTCCC-EEEECCTT----
T ss_pred CCCCEEEEECCC-----CHHHHHHHHHHHHCCCEEEEEe--CC------HHHHHHHHHHHHhcCCcE-EEEEEeCC----
Confidence 345667776653 24454444 5678999875443 21 234445555555556521 22333332
Q ss_pred CccccCChHHHHHHHHHHHHhc-CCCEEEec
Q 025219 116 GFDKLWNHKSLAKIVEEEVVNC-SIDLIITF 145 (256)
Q Consensus 116 g~~~~~~~~~l~~~l~~~i~~~-~Pd~V~t~ 145 (256)
+.+.+.+.+.++.+++ ++|+++-.
T Consensus 88 ------d~~~v~~~~~~~~~~~g~iD~lvnn 112 (270)
T 3ftp_A 88 ------DATAVDALVESTLKEFGALNVLVNN 112 (270)
T ss_dssp ------CHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred ------CHHHHHHHHHHHHHHcCCCCEEEEC
Confidence 3345555566666555 57887654
No 204
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=20.12 E-value=1.9e+02 Score=22.72 Aligned_cols=24 Identities=8% Similarity=0.003 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCEEEecCC
Q 025219 124 KSLAKIVEEEVVNCSIDLIITFDN 147 (256)
Q Consensus 124 ~~l~~~l~~~i~~~~Pd~V~t~d~ 147 (256)
..+.+.|.++|++++||.+..=.+
T Consensus 49 ~~I~~~l~~~i~~~~Pd~vaiE~~ 72 (166)
T 4ep4_A 49 GRIHARVLEVLHRFRPEAVAVEEQ 72 (166)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCEEEEeeh
Confidence 467788999999999999887543
Done!