Query 025220
Match_columns 256
No_of_seqs 129 out of 1471
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 03:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025220.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025220hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 3.8E-30 8.3E-35 216.6 19.2 222 2-223 72-298 (302)
2 PTZ00343 triose or hexose phos 100.0 3.7E-28 8E-33 207.7 21.9 218 2-219 121-349 (350)
3 KOG1441 Glucose-6-phosphate/ph 100.0 9.4E-29 2E-33 204.3 12.6 223 1-225 89-314 (316)
4 PLN00411 nodulin MtN21 family 100.0 2.2E-26 4.8E-31 196.2 21.2 212 7-223 90-333 (358)
5 PF06027 DUF914: Eukaryotic pr 99.9 9.7E-26 2.1E-30 188.7 19.0 217 2-224 86-311 (334)
6 PF08449 UAA: UAA transporter 99.9 1.9E-25 4.1E-30 187.9 20.7 219 2-223 71-302 (303)
7 TIGR00950 2A78 Carboxylate/Ami 99.9 3.9E-23 8.4E-28 170.4 20.5 203 3-213 55-259 (260)
8 PRK11689 aromatic amino acid e 99.9 6.9E-23 1.5E-27 171.8 22.3 205 5-221 71-290 (295)
9 PRK11453 O-acetylserine/cystei 99.9 1.1E-22 2.3E-27 171.0 22.9 213 8-221 72-290 (299)
10 PRK15430 putative chlorampheni 99.9 1.1E-22 2.3E-27 170.7 20.0 207 3-220 81-287 (296)
11 PRK11272 putative DMT superfam 99.9 1.9E-21 4.1E-26 162.9 22.0 206 6-221 80-288 (292)
12 KOG1444 Nucleotide-sugar trans 99.9 3.2E-22 7E-27 162.2 15.4 225 2-226 84-308 (314)
13 KOG1443 Predicted integral mem 99.9 1.5E-21 3.2E-26 156.5 14.8 217 2-218 91-315 (349)
14 PRK10532 threonine and homoser 99.9 2.9E-20 6.3E-25 155.8 22.9 202 2-220 78-283 (293)
15 KOG1442 GDP-fucose transporter 99.9 2.5E-23 5.5E-28 164.1 3.0 226 1-228 108-337 (347)
16 TIGR03340 phn_DUF6 phosphonate 99.8 9.7E-21 2.1E-25 157.8 12.3 204 4-215 72-280 (281)
17 KOG1580 UDP-galactose transpor 99.8 5.1E-20 1.1E-24 142.6 9.4 213 2-217 92-312 (337)
18 COG0697 RhaT Permeases of the 99.8 9.5E-18 2.1E-22 140.0 22.7 205 3-219 78-288 (292)
19 KOG2765 Predicted membrane pro 99.8 8.9E-19 1.9E-23 144.3 15.5 218 2-221 162-393 (416)
20 KOG2234 Predicted UDP-galactos 99.8 5.7E-18 1.2E-22 139.5 19.6 216 2-223 99-327 (345)
21 PF04142 Nuc_sug_transp: Nucle 99.8 4.3E-18 9.4E-23 138.0 18.3 203 2-208 24-243 (244)
22 KOG3912 Predicted integral mem 99.8 1.7E-18 3.8E-23 137.3 13.9 215 3-218 94-334 (372)
23 PF03151 TPT: Triose-phosphate 99.8 8.2E-18 1.8E-22 127.6 14.7 143 76-218 1-153 (153)
24 COG2962 RarD Predicted permeas 99.8 5.2E-17 1.1E-21 130.4 19.5 210 2-223 79-288 (293)
25 KOG1581 UDP-galactose transpor 99.8 3.3E-17 7.1E-22 131.7 18.3 218 2-222 90-317 (327)
26 COG5070 VRG4 Nucleotide-sugar 99.8 5.8E-18 1.3E-22 130.2 10.9 222 2-225 75-303 (309)
27 TIGR00688 rarD rarD protein. T 99.7 1.1E-16 2.4E-21 131.6 17.4 179 2-193 77-255 (256)
28 KOG4510 Permease of the drug/m 99.7 1.7E-18 3.6E-23 136.6 5.7 208 7-223 109-330 (346)
29 TIGR00776 RhaT RhaT L-rhamnose 99.7 3.5E-16 7.6E-21 130.7 19.6 201 3-218 67-288 (290)
30 KOG1583 UDP-N-acetylglucosamin 99.7 1.2E-16 2.7E-21 126.6 9.1 214 7-224 76-320 (330)
31 COG5006 rhtA Threonine/homoser 99.6 3.6E-14 7.9E-19 111.5 17.0 203 2-220 78-284 (292)
32 KOG2766 Predicted membrane pro 99.6 1.4E-15 2.9E-20 119.5 6.9 196 13-218 96-299 (336)
33 KOG1582 UDP-galactose transpor 99.6 7.9E-15 1.7E-19 116.2 10.8 218 2-220 113-334 (367)
34 TIGR00803 nst UDP-galactose tr 99.4 1.6E-12 3.5E-17 104.6 9.9 189 19-216 2-222 (222)
35 COG2510 Predicted membrane pro 99.3 2.2E-11 4.8E-16 86.0 9.9 135 76-217 4-138 (140)
36 PF00892 EamA: EamA-like trans 99.3 3.8E-11 8.1E-16 87.4 10.7 124 85-217 1-125 (126)
37 KOG4314 Predicted carbohydrate 99.3 7.6E-11 1.7E-15 89.6 11.4 209 5-218 63-276 (290)
38 TIGR00688 rarD rarD protein. T 99.1 8E-09 1.7E-13 85.0 16.3 139 75-217 2-141 (256)
39 PRK15430 putative chlorampheni 99.1 9.4E-09 2E-13 86.4 15.9 142 70-217 3-144 (296)
40 PLN00411 nodulin MtN21 family 98.9 5.7E-08 1.2E-12 83.4 15.9 137 77-219 15-157 (358)
41 TIGR03340 phn_DUF6 phosphonate 98.9 6.3E-08 1.4E-12 80.8 15.8 133 77-218 3-135 (281)
42 PF06800 Sugar_transport: Suga 98.9 7.2E-08 1.6E-12 78.5 14.9 200 2-215 52-268 (269)
43 PF13536 EmrE: Multidrug resis 98.7 2.8E-08 6.1E-13 71.2 4.4 65 6-71 46-110 (113)
44 PF05653 Mg_trans_NIPA: Magnes 98.6 4.7E-07 1E-11 75.9 9.5 64 4-67 59-122 (300)
45 PRK11689 aromatic amino acid e 98.6 3.2E-06 6.8E-11 71.1 14.4 130 75-218 4-137 (295)
46 TIGR00950 2A78 Carboxylate/Ami 98.5 1.9E-06 4.2E-11 70.8 12.7 118 88-218 2-119 (260)
47 PRK11272 putative DMT superfam 98.5 1E-05 2.2E-10 67.9 16.8 129 78-218 11-141 (292)
48 COG2962 RarD Predicted permeas 98.5 6.3E-06 1.4E-10 67.1 14.1 140 73-219 5-145 (293)
49 PRK11453 O-acetylserine/cystei 98.5 8.4E-06 1.8E-10 68.6 14.9 124 78-218 7-132 (299)
50 PTZ00343 triose or hexose phos 98.5 1.5E-05 3.2E-10 68.6 16.5 134 77-217 51-185 (350)
51 PRK02971 4-amino-4-deoxy-L-ara 98.4 1.3E-05 2.8E-10 58.6 13.2 118 75-218 2-122 (129)
52 TIGR00817 tpt Tpt phosphate/ph 98.3 3.6E-05 7.7E-10 64.9 15.9 122 87-216 14-135 (302)
53 PF13536 EmrE: Multidrug resis 98.3 2.2E-05 4.7E-10 56.2 11.9 73 148-221 36-109 (113)
54 PF00892 EamA: EamA-like trans 98.3 4.4E-07 9.5E-12 65.8 3.0 61 5-65 64-124 (126)
55 PRK15051 4-amino-4-deoxy-L-ara 98.3 1.3E-06 2.7E-11 62.2 4.8 64 3-66 45-108 (111)
56 PRK13499 rhamnose-proton sympo 98.2 0.00022 4.9E-09 60.6 17.3 215 2-219 80-342 (345)
57 TIGR00776 RhaT RhaT L-rhamnose 98.1 5.1E-05 1.1E-09 63.6 12.3 131 76-219 2-137 (290)
58 PF06027 DUF914: Eukaryotic pr 98.1 0.00013 2.8E-09 61.9 14.5 139 75-219 13-152 (334)
59 PF08449 UAA: UAA transporter 98.1 0.00013 2.9E-09 61.5 14.7 127 87-222 12-140 (303)
60 PF04657 DUF606: Protein of un 98.1 0.00034 7.4E-09 51.8 13.9 131 77-215 3-138 (138)
61 COG2510 Predicted membrane pro 98.0 4.7E-06 1E-10 59.3 3.1 65 3-67 75-139 (140)
62 KOG2922 Uncharacterized conser 98.0 6E-05 1.3E-09 62.2 9.1 66 4-69 73-138 (335)
63 PRK15051 4-amino-4-deoxy-L-ara 98.0 0.00011 2.5E-09 52.2 9.4 56 162-217 53-108 (111)
64 COG0697 RhaT Permeases of the 97.9 0.00087 1.9E-08 55.6 15.4 140 74-221 6-146 (292)
65 PF04142 Nuc_sug_transp: Nucle 97.8 0.00013 2.9E-09 59.4 8.9 77 146-222 17-93 (244)
66 PRK02971 4-amino-4-deoxy-L-ara 97.7 6.6E-05 1.4E-09 54.8 5.0 66 3-68 56-123 (129)
67 PRK10532 threonine and homoser 97.7 0.0021 4.6E-08 53.9 14.5 125 74-216 11-135 (293)
68 PF07857 DUF1632: CEO family ( 97.7 0.00021 4.6E-09 58.1 7.7 132 76-223 1-139 (254)
69 PRK10452 multidrug efflux syst 97.6 0.00073 1.6E-08 48.5 9.3 54 166-219 50-104 (120)
70 COG4975 GlcU Putative glucose 97.6 5.2E-06 1.1E-10 65.8 -2.3 202 3-218 67-285 (288)
71 PRK10650 multidrug efflux syst 97.5 0.0053 1.2E-07 43.3 12.2 52 166-217 55-107 (109)
72 PRK10452 multidrug efflux syst 97.5 0.00019 4.1E-09 51.5 4.9 65 3-67 38-103 (120)
73 COG3238 Uncharacterized protei 97.5 0.012 2.7E-07 43.7 14.0 138 74-218 4-146 (150)
74 PRK09541 emrE multidrug efflux 97.4 0.0026 5.7E-08 45.0 9.1 53 166-218 50-103 (110)
75 PRK09541 emrE multidrug efflux 97.3 0.0004 8.6E-09 49.2 4.7 65 3-67 38-103 (110)
76 PRK11431 multidrug efflux syst 97.3 0.0031 6.8E-08 44.2 8.9 53 166-218 49-102 (105)
77 COG2076 EmrE Membrane transpor 97.3 0.0031 6.8E-08 43.9 8.3 54 166-219 50-104 (106)
78 PRK11431 multidrug efflux syst 97.3 0.00072 1.6E-08 47.4 5.2 63 3-65 37-100 (105)
79 PRK10650 multidrug efflux syst 97.2 0.00089 1.9E-08 47.2 5.0 63 3-65 43-106 (109)
80 PRK13499 rhamnose-proton sympo 97.1 0.01 2.2E-07 50.6 11.6 141 74-222 6-157 (345)
81 KOG2234 Predicted UDP-galactos 97.1 0.047 1E-06 46.2 15.1 139 79-217 19-163 (345)
82 PF03151 TPT: Triose-phosphate 97.0 0.0018 3.9E-08 48.6 5.7 64 3-66 89-152 (153)
83 COG2076 EmrE Membrane transpor 97.0 0.0019 4E-08 45.0 4.9 63 3-65 38-101 (106)
84 PF00893 Multi_Drug_Res: Small 96.9 0.003 6.5E-08 43.4 5.6 56 3-58 37-93 (93)
85 KOG4510 Permease of the drug/m 96.7 0.00095 2.1E-08 53.9 1.9 136 75-222 38-173 (346)
86 PF06800 Sugar_transport: Suga 96.4 0.033 7.1E-07 45.8 9.2 80 144-223 43-127 (269)
87 PF05653 Mg_trans_NIPA: Magnes 96.3 0.039 8.5E-07 46.4 9.5 117 73-217 5-121 (300)
88 PF00893 Multi_Drug_Res: Small 95.6 0.065 1.4E-06 36.7 6.5 45 165-209 48-93 (93)
89 PF10639 UPF0546: Uncharacteri 95.5 0.031 6.8E-07 39.6 4.7 61 5-65 51-112 (113)
90 KOG2765 Predicted membrane pro 95.3 0.026 5.6E-07 48.0 4.5 79 145-223 158-236 (416)
91 COG5006 rhtA Threonine/homoser 95.3 0.029 6.2E-07 45.2 4.4 58 7-64 222-279 (292)
92 KOG1580 UDP-galactose transpor 95.1 0.099 2.2E-06 41.8 6.7 129 85-223 23-162 (337)
93 TIGR00803 nst UDP-galactose tr 94.3 0.056 1.2E-06 43.3 3.8 60 5-64 162-221 (222)
94 KOG1581 UDP-galactose transpor 93.4 3.2 6.8E-05 34.7 12.3 134 81-223 20-160 (327)
95 COG4975 GlcU Putative glucose 93.4 0.043 9.3E-07 44.1 1.6 130 76-219 3-137 (288)
96 PF06379 RhaT: L-rhamnose-prot 93.1 3.9 8.5E-05 34.8 12.7 145 74-224 6-159 (344)
97 PF10639 UPF0546: Uncharacteri 93.0 0.31 6.7E-06 34.6 5.3 52 164-215 59-111 (113)
98 KOG4314 Predicted carbohydrate 92.6 0.062 1.3E-06 41.7 1.4 63 158-220 65-127 (290)
99 KOG3912 Predicted integral mem 90.5 1.6 3.5E-05 36.1 7.5 70 149-218 89-158 (372)
100 KOG1441 Glucose-6-phosphate/ph 87.4 0.63 1.4E-05 39.4 3.3 123 89-217 31-176 (316)
101 PRK02237 hypothetical protein; 84.4 8.7 0.00019 26.9 7.1 48 172-219 59-106 (109)
102 KOG2922 Uncharacterized conser 84.1 0.35 7.5E-06 40.5 0.2 118 73-218 19-136 (335)
103 KOG1444 Nucleotide-sugar trans 82.8 28 0.00061 29.4 13.9 133 76-217 13-148 (314)
104 PF02694 UPF0060: Uncharacteri 82.7 1.2 2.7E-05 30.9 2.4 40 30-69 66-105 (107)
105 PF02694 UPF0060: Uncharacteri 82.2 7.8 0.00017 27.0 6.1 48 172-219 57-104 (107)
106 COG1742 Uncharacterized conser 81.9 2.6 5.6E-05 29.1 3.7 40 30-69 67-106 (109)
107 PF07168 Ureide_permease: Urei 81.8 1.5 3.3E-05 36.6 3.0 132 81-217 2-145 (336)
108 PRK02237 hypothetical protein; 81.1 1.5 3.2E-05 30.6 2.3 40 30-69 68-107 (109)
109 PF08507 COPI_assoc: COPI asso 80.8 4.6 9.9E-05 29.7 5.1 35 183-218 71-105 (136)
110 PF05297 Herpes_LMP1: Herpesvi 79.6 0.59 1.3E-05 38.4 0.0 100 19-119 47-150 (381)
111 PF05977 MFS_3: Transmembrane 76.9 61 0.0013 29.8 14.9 19 175-193 349-367 (524)
112 PF04657 DUF606: Protein of un 76.1 6.8 0.00015 28.9 4.8 61 3-63 72-137 (138)
113 PF05961 Chordopox_A13L: Chord 76.0 3.5 7.5E-05 26.0 2.7 26 201-226 5-30 (68)
114 PF06679 DUF1180: Protein of u 74.2 5.7 0.00012 30.2 4.0 12 240-251 137-148 (163)
115 PF01102 Glycophorin_A: Glycop 73.8 3.1 6.6E-05 30.0 2.4 10 241-250 106-115 (122)
116 KOG1479 Nucleoside transporter 71.8 72 0.0016 28.2 11.8 23 195-217 177-201 (406)
117 PHA03049 IMV membrane protein; 70.6 8.3 0.00018 24.2 3.4 26 201-226 5-30 (68)
118 PF04342 DUF486: Protein of un 68.5 6.3 0.00014 27.4 2.8 29 187-215 77-105 (108)
119 PRK06638 NADH:ubiquinone oxido 64.5 68 0.0015 25.2 10.9 48 75-126 30-77 (198)
120 PF04342 DUF486: Protein of un 64.3 14 0.00031 25.7 3.9 59 7-65 47-106 (108)
121 PF11446 DUF2897: Protein of u 63.5 11 0.00025 22.9 3.0 14 206-219 8-21 (55)
122 COG3086 RseC Positive regulato 62.5 29 0.00063 25.7 5.5 28 167-194 69-96 (150)
123 KOG2766 Predicted membrane pro 61.6 2.1 4.6E-05 34.9 -0.5 59 159-217 91-149 (336)
124 PF15102 TMEM154: TMEM154 prot 60.5 8.3 0.00018 28.6 2.4 23 204-226 67-89 (146)
125 KOG1442 GDP-fucose transporter 60.4 6 0.00013 32.7 1.8 53 163-215 119-171 (347)
126 TIGR00892 2A0113 monocarboxyla 59.0 1.2E+02 0.0026 27.0 10.1 14 201-214 402-415 (455)
127 PRK02463 OxaA-like protein pre 55.8 87 0.0019 26.6 8.1 39 178-217 210-248 (307)
128 COG1742 Uncharacterized conser 55.6 30 0.00066 24.0 4.3 46 174-219 60-105 (109)
129 PF06379 RhaT: L-rhamnose-prot 54.1 1.4E+02 0.0031 25.7 16.2 208 10-218 88-340 (344)
130 COG3169 Uncharacterized protei 53.4 20 0.00042 24.6 3.1 41 176-216 69-113 (116)
131 PRK13108 prolipoprotein diacyl 53.1 1.8E+02 0.0038 26.4 10.4 24 198-221 254-277 (460)
132 PRK14397 membrane protein; Pro 51.8 1.3E+02 0.0027 24.3 8.9 11 210-220 168-178 (222)
133 PF15471 TMEM171: Transmembran 50.8 17 0.00036 29.9 2.8 20 200-219 161-180 (319)
134 KOG1623 Multitransmembrane pro 50.4 76 0.0017 25.9 6.6 45 173-217 161-205 (243)
135 COG5336 Uncharacterized protei 48.8 93 0.002 21.9 6.9 39 183-221 56-95 (116)
136 TIGR00910 2A0307_GadC glutamat 47.6 2.2E+02 0.0048 25.9 13.1 16 104-119 330-345 (507)
137 COG5070 VRG4 Nucleotide-sugar 47.6 17 0.00036 29.3 2.3 55 6-60 235-289 (309)
138 PRK15432 autoinducer 2 ABC tra 46.0 62 0.0013 27.9 5.9 22 200-221 288-309 (344)
139 PF04246 RseC_MucC: Positive r 46.0 45 0.00098 24.2 4.4 26 169-194 64-89 (135)
140 TIGR02840 spore_YtaF putative 45.7 60 0.0013 25.7 5.3 47 171-217 32-80 (206)
141 PLN02776 prenyltransferase 44.1 2.1E+02 0.0046 24.7 14.6 20 39-58 115-134 (341)
142 COG4657 RnfA Predicted NADH:ub 42.9 26 0.00056 26.5 2.6 12 44-55 94-105 (193)
143 TIGR00939 2a57 Equilibrative N 42.1 2.6E+02 0.0055 25.1 9.7 14 203-216 179-192 (437)
144 PF15345 TMEM51: Transmembrane 42.0 35 0.00076 27.4 3.4 23 204-226 67-89 (233)
145 KOG4831 Unnamed protein [Funct 41.0 57 0.0012 22.8 3.9 53 164-216 70-123 (125)
146 PRK10862 SoxR reducing system 39.9 72 0.0016 24.0 4.7 24 170-193 72-95 (154)
147 PF07444 Ycf66_N: Ycf66 protei 39.2 35 0.00077 22.8 2.6 25 197-221 4-28 (84)
148 KOG1583 UDP-N-acetylglucosamin 38.9 24 0.00053 29.3 2.1 50 177-226 96-145 (330)
149 PF11027 DUF2615: Protein of u 38.5 1.1E+02 0.0023 21.4 5.0 23 201-223 55-77 (103)
150 COG1971 Predicted membrane pro 37.9 65 0.0014 25.2 4.2 45 172-216 40-85 (190)
151 COG3169 Uncharacterized protei 35.1 33 0.00071 23.6 2.0 30 36-65 84-113 (116)
152 PF13038 DUF3899: Domain of un 34.4 21 0.00046 24.0 1.1 19 199-217 3-21 (92)
153 COG4736 CcoQ Cbb3-type cytochr 34.2 29 0.00062 21.6 1.4 21 204-224 16-36 (60)
154 PF03348 Serinc: Serine incorp 33.9 63 0.0014 28.9 4.1 23 198-220 283-305 (429)
155 PRK12437 prolipoprotein diacyl 33.4 47 0.001 27.5 3.1 23 198-220 235-257 (269)
156 PHA02644 hypothetical protein; 32.9 48 0.001 21.8 2.4 9 240-248 85-93 (112)
157 PLN00028 nitrate transmembrane 31.1 3.9E+02 0.0084 23.9 12.5 19 174-192 384-402 (476)
158 PRK15120 lipopolysaccharide AB 30.0 3E+02 0.0065 23.7 7.7 68 52-119 274-341 (366)
159 PF12259 DUF3609: Protein of u 29.8 52 0.0011 28.6 2.9 49 203-251 306-359 (361)
160 PRK10644 arginine:agmatin anti 29.6 4E+02 0.0087 23.6 11.3 41 181-222 389-430 (445)
161 PRK14778 lipoprotein signal pe 29.0 72 0.0016 24.9 3.2 10 149-158 85-94 (186)
162 PF11044 TMEMspv1-c74-12: Plec 28.8 14 0.00031 21.1 -0.5 11 210-220 20-30 (49)
163 PF14851 FAM176: FAM176 family 28.7 1E+02 0.0022 23.2 3.8 7 172-178 19-25 (153)
164 PTZ00207 hypothetical protein; 28.3 4.8E+02 0.01 24.5 9.0 28 169-196 483-510 (591)
165 KOG0847 Transcription factor, 27.8 30 0.00064 27.5 0.9 19 201-219 201-219 (288)
166 PF15048 OSTbeta: Organic solu 27.4 1.2E+02 0.0025 22.0 3.7 22 196-217 30-55 (125)
167 KOG0847 Transcription factor, 27.2 58 0.0013 25.9 2.4 19 237-255 251-269 (288)
168 PF05337 CSF-1: Macrophage col 26.8 21 0.00046 29.4 0.0 21 202-222 234-254 (285)
169 TIGR00905 2A0302 transporter, 26.6 4.7E+02 0.01 23.4 10.5 22 201-222 417-438 (473)
170 PF02447 GntP_permease: GntP f 26.6 4.8E+02 0.01 23.5 13.4 22 192-213 165-186 (441)
171 PF12606 RELT: Tumour necrosis 26.4 1.5E+02 0.0033 17.6 3.5 13 208-220 13-25 (50)
172 PF03739 YjgP_YjgQ: Predicted 26.0 3.1E+02 0.0067 23.3 7.1 63 53-115 281-343 (354)
173 PF08693 SKG6: Transmembrane a 24.4 49 0.0011 18.7 1.2 18 204-221 21-38 (40)
174 PF06570 DUF1129: Protein of u 24.4 3.5E+02 0.0076 21.2 7.4 22 76-97 180-201 (206)
175 PF12768 Rax2: Cortical protei 23.9 1.2E+02 0.0025 25.5 3.8 17 207-223 243-259 (281)
176 PF02487 CLN3: CLN3 protein; 23.5 5.3E+02 0.011 22.9 11.6 39 30-68 69-109 (402)
177 PRK00052 prolipoprotein diacyl 23.2 90 0.0019 25.9 3.0 22 198-219 237-258 (269)
178 KOG1443 Predicted integral mem 22.9 3.8E+02 0.0083 22.9 6.5 57 162-218 100-156 (349)
179 PF11045 YbjM: Putative inner 22.6 3.1E+02 0.0067 19.9 10.2 90 111-208 7-97 (125)
180 KOG2822 Sphingoid base-phospha 22.5 1.9E+02 0.0042 25.2 4.9 21 176-196 310-330 (407)
181 COG3366 Uncharacterized protei 22.5 1.7E+02 0.0037 24.8 4.5 39 179-218 106-144 (311)
182 MTH00057 ND6 NADH dehydrogenas 22.4 3.8E+02 0.0082 20.8 8.6 24 188-211 133-156 (186)
183 KOG4812 Golgi-associated prote 22.3 1.3E+02 0.0028 24.5 3.5 22 197-218 218-239 (262)
184 KOG4831 Unnamed protein [Funct 22.1 75 0.0016 22.2 1.9 55 11-65 68-123 (125)
185 PF11384 DUF3188: Protein of u 21.8 77 0.0017 18.7 1.7 20 201-220 28-47 (49)
186 PF10753 DUF2566: Protein of u 21.8 1.9E+02 0.0041 17.6 3.4 32 26-57 7-38 (55)
187 COG3238 Uncharacterized protei 21.6 1.8E+02 0.0039 21.8 4.0 54 11-64 85-143 (150)
188 PRK10655 potE putrescine trans 21.3 5.7E+02 0.012 22.5 10.4 23 201-223 409-431 (438)
189 PF01988 VIT1: VIT family; In 21.2 34 0.00073 27.2 0.1 37 180-216 12-48 (213)
190 TIGR02865 spore_II_E stage II 21.1 7.8E+02 0.017 24.0 12.5 43 22-64 11-53 (764)
191 PF15055 DUF4536: Domain of un 20.9 86 0.0019 18.4 1.7 21 203-223 8-28 (47)
192 PF05297 Herpes_LMP1: Herpesvi 20.9 28 0.00061 29.0 -0.4 18 164-181 126-143 (381)
193 KOG1582 UDP-galactose transpor 20.7 5.2E+02 0.011 21.8 6.9 48 175-222 135-182 (367)
194 PRK11469 hypothetical protein; 20.0 2.8E+02 0.006 21.6 5.0 45 172-216 40-85 (188)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=3.8e-30 Score=216.55 Aligned_cols=222 Identities=28% Similarity=0.455 Sum_probs=184.2
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l 81 (256)
|++++....+.|.+++|++++++++++++.|+++++++++++|||++++++.+++++++|+.+....+.+.+..|+++++
T Consensus 72 g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l 151 (302)
T TIGR00817 72 AIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAM 151 (302)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999998876666666778999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchh--hhhcc--CCCChhHHHHHHHHHH-HH
Q 025220 82 FGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIM--DWLST--HPSPWSAFIIIFSSGV-LA 156 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~-~~ 156 (256)
.+++++|++.++.||..++++.|+.++..|+...+.+.++|.....|+.+.. ++... .......+......+. +.
T Consensus 152 ~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (302)
T TIGR00817 152 ISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFF 231 (302)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHH
Confidence 9999999999999998765568999999999999999999988776654321 11110 0011112222323333 33
Q ss_pred HHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 157 FCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
...+...+..+++++|.++++..+++|++++++|++++||++++.+++|+++++.|+.+|++.|.+|
T Consensus 232 ~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~ 298 (302)
T TIGR00817 232 HFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQK 298 (302)
T ss_pred HHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccC
Confidence 3455667788999999999999999999999999999999999999999999999999999765433
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.96 E-value=3.7e-28 Score=207.67 Aligned_cols=218 Identities=26% Similarity=0.437 Sum_probs=186.5
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l 81 (256)
|+++...+...+.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+...++.+.++.|+++++
T Consensus 121 gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l 200 (350)
T PTZ00343 121 GLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAM 200 (350)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHH
Confidence 56666667778899999999999999999999999999999999999999999999999999998888888889999999
Q ss_pred HHHHHHHHHHHHHHHHhccC-----CCChHHHHHHHhHHHHHHHHHHHHHhcCcchhh-hh----ccCC-CChhHHHHHH
Q 025220 82 FGCLATSTKTILAESLLHSY-----KFDSINTVYYMAPFATMILSIPALLLEGSGIMD-WL----STHP-SPWSAFIIIF 150 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~-~~~~~~~~~~ 150 (256)
++++++|.+.++.||..++. +.++.++..+..+++.++++|.....|...... +. .... .....+..++
T Consensus 201 ~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 280 (350)
T PTZ00343 201 LSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIF 280 (350)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHH
Confidence 99999999999999988643 367887888889999999999887776543211 10 0011 1122344566
Q ss_pred HHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 151 SSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
.+++..++++...|..+++++|.++++.++++|++++++|++++||++++.+++|.++++.|+.+|++.
T Consensus 281 ~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 281 FSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 778888888888999999999999999999999999999999999999999999999999999999875
No 3
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=9.4e-29 Score=204.25 Aligned_cols=223 Identities=43% Similarity=0.686 Sum_probs=198.0
Q ss_pred CchHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHH
Q 025220 1 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAA 80 (256)
Q Consensus 1 l~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~ 80 (256)
+|++++...+++|.++.++|++++|++++++|+++.++++++.+|++++..+.+++..+.|+.+.+..|.++++.|.+.+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--ccCCCChHHHHHHHhHHHHHHHH-HHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHH
Q 025220 81 LFGCLATSTKTILAESLL--HSYKFDSINTVYYMAPFATMILS-IPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 157 (256)
Q Consensus 81 l~a~~~~a~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (256)
+++.+.+++++++.|+.. ++++.|+++++.|+.+++...++ |.....|+.....+ .........+ ...+..++++
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~sv~~f 246 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGF-LTAPWFVTFL-ILLLNSVLAF 246 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeee-eccccchhhH-HHHHHHHHHH
Confidence 999999999999999999 46789999999999999999998 77777666543111 1111122223 3444449999
Q ss_pred HHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccccC
Q 025220 158 CLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQ 225 (256)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~ 225 (256)
++|...|+++.++||++.++.+.+|.++.+..|+++|++++++.+..|+++.+.|+.+|++.|.++.+
T Consensus 247 ~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 247 LLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred HHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999998876544
No 4
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.95 E-value=2.2e-26 Score=196.22 Aligned_cols=212 Identities=12% Similarity=0.197 Sum_probs=165.2
Q ss_pred HHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHH------hccccChhhhhhhhhhhhceeEeeec-cc---------
Q 025220 7 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLV------WRKYFDWRIWASLVPIVGGILLTSVT-EL--------- 70 (256)
Q Consensus 7 ~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~------~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~--------- 70 (256)
+...+.+.+++|++++++.++.++.|++++++++++ +|||++++++.|+++++.|+.++... +.
T Consensus 90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~ 169 (358)
T PLN00411 90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP 169 (358)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 455578999999999999999999999999999999 69999999999999999999876531 11
Q ss_pred --------------ccc-hhhHHHHHHHHHHHHHHHHHHHHHhccCCCCh-HHHHHHHhHHHHHHHHHHHHHhcCcchhh
Q 025220 71 --------------SFN-MFGFCAALFGCLATSTKTILAESLLHSYKFDS-INTVYYMAPFATMILSIPALLLEGSGIMD 134 (256)
Q Consensus 71 --------------~~~-~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (256)
..+ ..|+.+.+.++++||.|.++.|+..++ .++ ....+|+..++.....+.....++.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 112 349999999999999999999998773 444 45566777777666666666555432222
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHH
Q 025220 135 WLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCT 214 (256)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~ 214 (256)
|.... .... ..++..++...+....+++++++.+|.+++++.+++|++++++|++++||++++.+++|+++++.|+.
T Consensus 248 ~~~~~--~~~~-~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~ 324 (358)
T PLN00411 248 WIIHF--DITL-ITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFY 324 (358)
T ss_pred ceecc--chHH-HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 21111 1122 23444445444555677789999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhccc
Q 025220 215 FYGYIRHLL 223 (256)
Q Consensus 215 ~~~~~~~~~ 223 (256)
+.++.++++
T Consensus 325 l~~~~~~~~ 333 (358)
T PLN00411 325 AVMWGKANE 333 (358)
T ss_pred HHHhhhhhh
Confidence 988755544
No 5
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.94 E-value=9.7e-26 Score=188.68 Aligned_cols=217 Identities=18% Similarity=0.260 Sum_probs=184.5
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc---------cc
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL---------SF 72 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------~~ 72 (256)
+++-.....+.+.|++|++++.++++.++..+++++++++++|+|+++.++.|++++++|+.++...|. +.
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~ 165 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN 165 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence 445556777888999999999999999999999999999999999999999999999999988776541 23
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHH
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
...|+++++.++++||.++++.|+..+ +.+..+.+.+.++++.++..+....+|..++.... .+...+.+++..
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~--~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~----w~~~~~~~~v~~ 239 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVK--KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIH----WTSQVIGLLVGY 239 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcc--cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccC----CChhhHHHHHHH
Confidence 478999999999999999999999998 56889999999999999998888888877655321 123345566666
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhcccc
Q 025220 153 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLS 224 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~ 224 (256)
+++.+..+...-..++.++|+..++-.....+.+++++++++|+++++..++|.+++++|.++|+..++++.
T Consensus 240 ~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~ 311 (334)
T PF06027_consen 240 ALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEE 311 (334)
T ss_pred HHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccc
Confidence 666666666677789999999999988889999999999999999999999999999999999987665443
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.94 E-value=1.9e-25 Score=187.88 Aligned_cols=219 Identities=24% Similarity=0.395 Sum_probs=191.9
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccccc---------
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSF--------- 72 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~--------- 72 (256)
++++.++..++|.|++|+|.++.+++|++.|+++++++++++|||++++++.++++.++|+++....|.+.
T Consensus 71 ~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~ 150 (303)
T PF08449_consen 71 SFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSF 150 (303)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccc
Confidence 67889999999999999999999999999999999999999999999999999999999999987755211
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhc--Cc-chhhhhccCCCChhHHHH
Q 025220 73 -NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLE--GS-GIMDWLSTHPSPWSAFII 148 (256)
Q Consensus 73 -~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~ 148 (256)
...|+++.+.+.++.|...+++||..++++.++.+.++|.+.++.+..++.....+ .. +..++.. ..+..+..
T Consensus 151 ~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~---~~p~~~~~ 227 (303)
T PF08449_consen 151 SSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS---AHPSVLLY 227 (303)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HhHHHHHH
Confidence 12399999999999999999999999988999999999999999999887777632 21 1112222 22345778
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 149 IFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
++..+++++..+...+..+++.+|.+.+++.++|.+++++++++++++++++.+|+|.++++.|..+|.+.|+++
T Consensus 228 l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 228 LLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 888888888888888889999999999999999999999999999999999999999999999999999887765
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.92 E-value=3.9e-23 Score=170.37 Aligned_cols=203 Identities=16% Similarity=0.116 Sum_probs=166.8
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc-cccchhhHHHHH
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-LSFNMFGFCAAL 81 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-~~~~~~g~~~~l 81 (256)
+.+++...+.+.|++++|++++.++.++.|+++++++++++|||++++++.++.+++.|+.++...+ .+.+..|+.+++
T Consensus 55 ~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l 134 (260)
T TIGR00950 55 LQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGL 134 (260)
T ss_pred HHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHH
Confidence 3467788899999999999999999999999999999999999999999999999999988876443 345568999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHH-HHH
Q 025220 82 FGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF-CLN 160 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (256)
.++++++.+.++.||..++.+.++.....+....+.+.+.+.....++... .+...+..++..++++. ..+
T Consensus 135 ~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 135 GSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQ--------ALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCC--------cchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987443445556557788888877777665443211 12233445555665554 445
Q ss_pred HHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHH
Q 025220 161 FSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGC 213 (256)
Q Consensus 161 ~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~ 213 (256)
...++.+++.++.+.+.+.+++|+++.+++++++||++++.+++|.++++.|+
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 56677899999999999999999999999999999999999999999999886
No 8
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.92 E-value=6.9e-23 Score=171.78 Aligned_cols=205 Identities=13% Similarity=0.102 Sum_probs=155.7
Q ss_pred HHHHHHhhhhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccc---------
Q 025220 5 FCINIVLGNVSLR----YIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELS--------- 71 (256)
Q Consensus 5 ~~~~~~~~~~al~----~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~--------- 71 (256)
++....+.+.+++ +.+++.+.++.++.|+++.+++++++|||++++++.++++++.|+.++..++.+
T Consensus 71 ~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~ 150 (295)
T PRK11689 71 FVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINN 150 (295)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhc
Confidence 4445555555554 568888999999999999999999999999999999999999999888754321
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHH
Q 025220 72 --FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIII 149 (256)
Q Consensus 72 --~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
.+..|+.+.+.++++||.|.++.||..+ +.++..... ..+...+.+.... ++.... ..+...+..+
T Consensus 151 ~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~~~---~~~~~~l~~~~~~-~~~~~~------~~~~~~~~~l 218 (295)
T PRK11689 151 IASNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITLFF---ILTALALWIKYFL-SPQPAM------VFSLPAIIKL 218 (295)
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhHHH---HHHHHHHHHHHHH-hcCccc------cCCHHHHHHH
Confidence 2345999999999999999999999865 456665432 2222333332222 221111 1123345455
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 150 FSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
+..++.+...+.++++.+++.+|.+.+.+.+++|+++.+++++++||++++.+++|+++++.|+.+....++
T Consensus 219 ~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 219 LLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 556655555667778899999999999999999999999999999999999999999999999988765443
No 9
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=1.1e-22 Score=171.04 Aligned_cols=213 Identities=13% Similarity=0.186 Sum_probs=161.5
Q ss_pred HHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc---cccchhhHHHHHHH
Q 025220 8 NIVLGNVSLRY-IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFGFCAALFG 83 (256)
Q Consensus 8 ~~~~~~~al~~-~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~g~~~~l~a 83 (256)
...+.+.++++ .|++.+.++.++.|+++.+++++++|||++++++.+++++++|+.++..++ .+.++.|+.+++.+
T Consensus 72 ~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~a 151 (299)
T PRK11453 72 QFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAA 151 (299)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHH
Confidence 44466678887 689999999999999999999999999999999999999999998876542 22345799999999
Q ss_pred HHHHHHHHHHHHHHhccC-CCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHH-
Q 025220 84 CLATSTKTILAESLLHSY-KFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNF- 161 (256)
Q Consensus 84 ~~~~a~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 161 (256)
++++|.+.++.||..++. ..+......+....+...........++++... ......+...+..++..++++....+
T Consensus 152 al~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~i~~t~~~~~ 230 (299)
T PRK11453 152 AFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-HSLVTIDMTTILSLMYLAFVATIVGYG 230 (299)
T ss_pred HHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-hhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986532 122334445555554444443333444332110 01111233456677777777775544
Q ss_pred HHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 162 SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
.++..+++.++.+.+.+.+++|+++.+++++++||++++.+++|+++++.|+.+..+.++
T Consensus 231 l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 555778999999999999999999999999999999999999999999999998766554
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.91 E-value=1.1e-22 Score=170.72 Aligned_cols=207 Identities=12% Similarity=0.086 Sum_probs=155.2
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHHH
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALF 82 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l~ 82 (256)
+..+....+.+++++++|++++.++.++.|+++++++++++|||++++++.++++++.|+.++...+.+. ..+++.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~l~ 156 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIALG 156 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHHHH
Confidence 4466788999999999999999999999999999999999999999999999999999999875432221 246888
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 025220 83 GCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFS 162 (256)
Q Consensus 83 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (256)
++++||.|.++.||..++...+......+..+.+.....+. .+.+ ...+ ...+...+..+...++.+...+.+
T Consensus 157 aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~---~~~~~~~~~~~~~~g~~t~i~~~~ 229 (296)
T PRK15430 157 LAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSS-TSHM---GQNPMSLNLLLIAAGIVTTVPLLC 229 (296)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCC-cccc---cCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998754222233333444444443332211 1111 1100 111112233444455556666777
Q ss_pred HHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 163 IFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 163 ~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
.+..+++.+|.+.+.+.+++|+++.+++++++||++++.+++|+++++.|+.+.....
T Consensus 230 ~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 230 FTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999998888876543
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.89 E-value=1.9e-21 Score=162.89 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=164.0
Q ss_pred HHHHHhhhhhc-cccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeec-ccccchhhHHHHHHH
Q 025220 6 CINIVLGNVSL-RYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT-ELSFNMFGFCAALFG 83 (256)
Q Consensus 6 ~~~~~~~~~al-~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~g~~~~l~a 83 (256)
+....+.+.+. ++++++.+.++.++.|+++++++++ +|||++++++.+++++++|+.++..+ +.+.+..|+.+++.+
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a 158 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIA 158 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHH
Confidence 34566778888 9999999999999999999999986 69999999999999999999877543 334456799999999
Q ss_pred HHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHH-HHHH
Q 025220 84 CLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFC-LNFS 162 (256)
Q Consensus 84 ~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 162 (256)
+++||.+.+..||..+ + ++.....++...+...+.+.....+.+... ..+...+..+...++++.. ....
T Consensus 159 ~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 159 SASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERLTA------LPTLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcccc------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999754 2 345566788888877777665543322100 0122345556666666553 3446
Q ss_pred HHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 163 IFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 163 ~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
.++.+++.++.+.+.+.+++|+++.+++++++||++++.+++|+.+++.|+.+.++.++
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 66789999999999999999999999999999999999999999999999999876444
No 12
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3.2e-22 Score=162.20 Aligned_cols=225 Identities=22% Similarity=0.360 Sum_probs=200.3
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l 81 (256)
+++|.++...+..+++|+++++++++|+.+|+++++....++|+|+++..|.++..+.+|.......|.+.+..|+.|.+
T Consensus 84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~ 163 (314)
T KOG1444|consen 84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWAL 163 (314)
T ss_pred HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHH
Q 025220 82 FGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNF 161 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (256)
..+++.+.+.++.||-.+..+.+.+.+++|+++.+.+.+.....++++.+-.............+..+.++|++++..++
T Consensus 164 ~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy 243 (314)
T KOG1444|consen 164 ANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISY 243 (314)
T ss_pred HHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999877899999999999999999988888887654111111122334567789999999999999
Q ss_pred HHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccccCC
Q 025220 162 SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
..+++.+.+|+++.++++......+.+..++.+|++.++...+|..+.+.|.++|++.+.++.+.
T Consensus 244 ~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~ 308 (314)
T KOG1444|consen 244 TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQ 308 (314)
T ss_pred HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccC
Confidence 99999999999999999977777777777778889999999999999999999999988765443
No 13
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=156.49 Aligned_cols=217 Identities=25% Similarity=0.397 Sum_probs=193.9
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l 81 (256)
++.-++...++|++++|++++.+++.|++.++|+.+++.++.-||+++.-..-+.++-+|+.+.++.+.+++..|..+..
T Consensus 91 alata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~ 170 (349)
T KOG1443|consen 91 ALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVL 170 (349)
T ss_pred hhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccC---CCChHHHHHHHhHHHHHHHHHHHHHhcCcchh---hhhccCCC--ChhHHHHHHHHH
Q 025220 82 FGCLATSTKTILAESLLHSY---KFDSINTVYYMAPFATMILSIPALLLEGSGIM---DWLSTHPS--PWSAFIIIFSSG 153 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~ 153 (256)
.++++.+++..+.|+..++. +.+|+..++...+.....++|..+.+|++... ......+. ..+....+.+.|
T Consensus 171 ~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g 250 (349)
T KOG1443|consen 171 AASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGG 250 (349)
T ss_pred HHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHH
Confidence 99999999999999998643 36899999999999999999999999997543 11222222 334456788888
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
..+++.-.+-|....+++..+.++.+-.+.+.+.+++..+.+++++-..|.|..++..|+..+..
T Consensus 251 ~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 251 LLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 88888888889999999999999999999999999999999999999999999999999999843
No 14
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.88 E-value=2.9e-20 Score=155.76 Aligned_cols=202 Identities=11% Similarity=0.047 Sum_probs=153.9
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc---cccchhhHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFGFC 78 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~g~~ 78 (256)
|++++....+.+++++++|++.+.++..+.|+++.+++ +|++++. .++.+++.|+.++...+ .+.+..|+.
T Consensus 78 g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~l 151 (293)
T PRK10532 78 GVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAA 151 (293)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHH
Confidence 44567777888899999999999999999999999876 3555544 45667789987765322 223467999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHH
Q 025220 79 AALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFC 158 (256)
Q Consensus 79 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (256)
+++.++++||.|.+..||..+ +.++... .+....+...+.+.....+... ......+..++..++++..
T Consensus 152 l~l~aa~~~a~~~v~~r~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~l~lgv~~t~ 220 (293)
T PRK10532 152 LALGAGACWAIYILSGQRAGA--EHGPATV-AIGSLIAALIFVPIGALQAGEA--------LWHWSILPLGLAVAILSTA 220 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cCCchHH-HHHHHHHHHHHHHHHHHccCcc--------cCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 4566665 4556666666666555433210 0122234344556666554
Q ss_pred HH-HHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 159 LN-FSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 159 ~~-~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
.. ...++.+++.+|.+++++.+++|+++.+++++++||++++.+++|+++++.|+..+.+..
T Consensus 221 ~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 221 LPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44 466788999999999999999999999999999999999999999999999999987543
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.5e-23 Score=164.05 Aligned_cols=226 Identities=19% Similarity=0.286 Sum_probs=199.8
Q ss_pred CchHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc---cccchhhH
Q 025220 1 MSFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFGF 77 (256)
Q Consensus 1 l~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~g~ 77 (256)
+++++.+++.+.|++++|.+++++++-|++..+|+.+++++++|+|-+.....++.++++|..+-..++ ....+.|.
T Consensus 108 lsvVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~Gv 187 (347)
T KOG1442|consen 108 LSVVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGV 187 (347)
T ss_pred hhheeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhh
Confidence 467788899999999999999999999999999999999999999999999999999999998877766 55678999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcc-hhhhhccCCCChhHHHHHHHHHHHH
Q 025220 78 CAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSG-IMDWLSTHPSPWSAFIIIFSSGVLA 156 (256)
Q Consensus 78 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (256)
++++.+.++-|+..+++||.....+-.-+.+.+|+++.++++.+|...+....+ +.++ .+.....+|.++.++|+++
T Consensus 188 ifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~--~~l~a~~Fw~~mtLsglfg 265 (347)
T KOG1442|consen 188 IFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGF--PHLPAIKFWILMTLSGLFG 265 (347)
T ss_pred HHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCc--ccchHHHHHHHHHHHHHHH
Confidence 999999999999999999988655667788899999999999999887765432 2222 1223467889999999999
Q ss_pred HHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccccCCCC
Q 025220 157 FCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQQPP 228 (256)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~~~ 228 (256)
+..++...+.+|-+||.++++-.+.+.....++++..++|..+...|-|-.+++.|..+|++.|..+++++.
T Consensus 266 F~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~ 337 (347)
T KOG1442|consen 266 FAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMRKAS 337 (347)
T ss_pred HHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999998876665543
No 16
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.85 E-value=9.7e-21 Score=157.79 Aligned_cols=204 Identities=11% Similarity=0.115 Sum_probs=150.4
Q ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc-ccchhhHHHHHH
Q 025220 4 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL-SFNMFGFCAALF 82 (256)
Q Consensus 4 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-~~~~~g~~~~l~ 82 (256)
.......+.+.++++.|++.+..+.++.|+++.+++++++|||++++++.|+.+++.|+.++..++. +.+..|+.+++.
T Consensus 72 ~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~ 151 (281)
T TIGR03340 72 ANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALA 151 (281)
T ss_pred HHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence 3556677888999999999999999999999999999999999999999999999999987764432 234568889999
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHH-HHHHHH---hcCcchhhhhccCCCChhHHHHHHHHHHHHHH
Q 025220 83 GCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMIL-SIPALL---LEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFC 158 (256)
Q Consensus 83 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (256)
++++++.|.+..|+..+ +.++.....+....+.... .|.... .+.... . ......+..+...++.+..
T Consensus 152 aal~~a~~~i~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~s~l 223 (281)
T TIGR03340 152 AALGTAIYSLSDKAAAL--GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSM---F---PYARQILPSATLGGLMIGG 223 (281)
T ss_pred HHHHHHHhhhhcccccc--chhcccccHHHHHHHHHHHHHHHHHHHHHHhccch---h---hhHHHHHHHHHHHHHHHHH
Confidence 99999999999887643 2333221111111222221 222221 111110 0 0111223334455555555
Q ss_pred HHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHH
Q 025220 159 LNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTF 215 (256)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~ 215 (256)
.+...++.+++.++.+.+...+++|+++.+++++++||++++.+++|+++++.|+.+
T Consensus 224 ~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 224 AYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 566777889999999999999999999999999999999999999999999999875
No 17
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.82 E-value=5.1e-20 Score=142.59 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=183.4
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc-------ccch
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL-------SFNM 74 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~-------~~~~ 74 (256)
++-|-+.++.+|.|+||+|-++..+-+++-||-++++++++.|++.+|+++.+++.+++|+++..+.+. +...
T Consensus 92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g 171 (337)
T KOG1580|consen 92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFG 171 (337)
T ss_pred HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccc
Confidence 456788999999999999999999999999999999999999999999999999999999998876542 2335
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcC-cchhhhhccCCCChhHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEG-SGIMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
.|-++.+++--..++....++|+.+.+..+.-+++++.++.+.+.+....++... +.+..+...+ +..++-+...+
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~Rh---P~~~~~l~l~a 248 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRH---PYVFWDLTLLA 248 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhc---cHHHHHHHHHH
Confidence 7889999999999999999999988778888999999999998877665555432 3333443333 44567777888
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
+.+.+.+...|..+...+|.+-|++.+.+..++++.|+++++.++++.||+|.++++.+...=.
T Consensus 249 i~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 249 IASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 8888888888899999999999999999999999999999999999999999999999887643
No 18
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=9.5e-18 Score=140.01 Aligned_cols=205 Identities=19% Similarity=0.266 Sum_probs=162.6
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHH-HHhccccChhhhhhhhhhhhceeEeeecccccc---hhhHH
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQW-LVWRKYFDWRIWASLVPIVGGILLTSVTELSFN---MFGFC 78 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~-i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~---~~g~~ 78 (256)
+.......+.+.++++++++.++++.++.|+++.++++ +++|||++++++.++++.+.|+.++..++...+ ..|+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~ 157 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLL 157 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHH
Confidence 45667788889999999999999999999999999997 677999999999999999999999987665443 58999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHH-HHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHH
Q 025220 79 AALFGCLATSTKTILAESLLHSYKFDSINTVY-YMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 157 (256)
Q Consensus 79 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (256)
+++.+++++|.+.+..|+.. +.++..... +... ..............+ .......+..+...++++.
T Consensus 158 ~~l~a~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~ 225 (292)
T COG0697 158 LALAAALLWALYTALVKRLS---RLGPVTLALLLQLL--LALLLLLLFFLSGFG-------APILSRAWLLLLYLGVFST 225 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHH--HHHHHHHHHHhcccc-------ccCCHHHHHHHHHHHHHHH
Confidence 99999999999999999986 345655555 3333 111111111111111 1122334556666666666
Q ss_pred H-HHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 158 C-LNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 158 ~-~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
. .+...+...++.++...+...+++|+.+.++++++++|+++..+++|..+++.|+.+...+
T Consensus 226 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 226 GLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 4 5666778899999999999999999999999999999999999999999999999998765
No 19
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.81 E-value=8.9e-19 Score=144.27 Aligned_cols=218 Identities=15% Similarity=0.203 Sum_probs=177.7
Q ss_pred chHHHHHH----HhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc-------
Q 025220 2 SFVFCINI----VLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL------- 70 (256)
Q Consensus 2 ~~~~~~~~----~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~------- 70 (256)
+++||.-+ ..+|.|+.+++++..+++.++.-+|+..++.++..||+++.+.+++++.++|+++++.+|.
T Consensus 162 sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~ 241 (416)
T KOG2765|consen 162 SLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLP 241 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCC
Confidence 45555544 4566799999999999999999999999999999999999999999999999999988742
Q ss_pred -ccchhhHHHHHHHHHHHHHHHHHHHHHhccC--CCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHH
Q 025220 71 -SFNMFGFCAALFGCLATSTKTILAESLLHSY--KFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFI 147 (256)
Q Consensus 71 -~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (256)
+....|+++++++++.||.|.++.||...++ ++|.-....+.+++..+++.|...+.+......+.-+. ...+..
T Consensus 242 a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~--~~q~~~ 319 (416)
T KOG2765|consen 242 ASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPS--STQFSL 319 (416)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCC--CceeEe
Confidence 3347899999999999999999999988654 68888888899999999998877766544333221111 122223
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 148 IIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
.+....+..+...+++-+..-.++|....+-+.+..+.+++.++++-+.++|+.+++|.+.++.|.+..++...
T Consensus 320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 33444444445668888888899999999999999999999999999999999999999999999999887543
No 20
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.81 E-value=5.7e-18 Score=139.52 Aligned_cols=216 Identities=13% Similarity=0.246 Sum_probs=179.4
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc-----------c
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-----------L 70 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-----------~ 70 (256)
+++|+++..+.+.++.+.+++++++..++-.+.|+++.++++|||.++.||.++++.+.|+.++..+. .
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~ 178 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSA 178 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999876221 2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchh--hhhccCCCChhHHHH
Q 025220 71 SFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIM--DWLSTHPSPWSAFII 148 (256)
Q Consensus 71 ~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 148 (256)
+..+.|....+.+++..++..++.||..++.+.+-+........++.++.+......|+.... +++ .+.+...|+.
T Consensus 179 ~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff--~G~s~~vw~v 256 (345)
T KOG2234|consen 179 QNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFF--YGYSSIVWLV 256 (345)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCcc--ccccHHHHHH
Confidence 345789999999999999999999999987676666666666777766666666666655442 222 3344556777
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 149 IFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
++..++.|...+... |+.+-..-+....+..+++.+.++.++|.++|.....|..+++.++.+|+..++++
T Consensus 257 Vl~~a~gGLlvs~v~----KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 257 VLLNAVGGLLVSLVM----KYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHhccchhHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 788887777766554 88888888888888999999999999999999999999999999999999655554
No 21
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.81 E-value=4.3e-18 Score=137.96 Aligned_cols=203 Identities=21% Similarity=0.317 Sum_probs=162.9
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc-----------
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL----------- 70 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----------- 70 (256)
+++|++...+.+.++++++++++++++++..+++++++++++|||+++++|.++++.+.|+.+...++.
T Consensus 24 A~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~ 103 (244)
T PF04142_consen 24 ALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSV 103 (244)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999999998754321
Q ss_pred ------ccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChh
Q 025220 71 ------SFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWS 144 (256)
Q Consensus 71 ------~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (256)
.....|..+.+.++++.++..++.||..|+.+.+.+....+....+.+..++.....++.++.+.-...+.+..
T Consensus 104 ~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~ 183 (244)
T PF04142_consen 104 HHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWW 183 (244)
T ss_pred ccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchH
Confidence 11357999999999999999999999998777677777777777777777666555544332211111222334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHH
Q 025220 145 AFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAI 208 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~l 208 (256)
.|..+...++.|..... ++|+.+...-+....+..+++.+.++.+|+.++|....+|..+
T Consensus 184 ~~~~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 184 VWIVIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 55555555555555443 4599999999999999999999999999999999999999765
No 22
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.80 E-value=1.7e-18 Score=137.31 Aligned_cols=215 Identities=17% Similarity=0.222 Sum_probs=171.0
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc----------cc
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL----------SF 72 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~----------~~ 72 (256)
+|=.....++|.++++++++.+|++|....+|+.+++..+++++++.++|+++.....|++++...|. +.
T Consensus 94 l~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ 173 (372)
T KOG3912|consen 94 LCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSS 173 (372)
T ss_pred HHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCcccccc
Confidence 34456678899999999999999999999999999999999999999999999999999998865542 23
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHh----cCcc--------hhhh----h
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLL----EGSG--------IMDW----L 136 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~--------~~~~----~ 136 (256)
...|+.+.+++-+.-|...++.+|..++.+++|.+.+.|..+++.+++....... .+.. +.+| -
T Consensus 174 iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~ 253 (372)
T KOG3912|consen 174 IITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFA 253 (372)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHH
Confidence 4579999999999999999999999998899999999999999976654333322 1101 1111 1
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 137 STHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
...+.+ .....+....+.-.++|+......|..|+++-.++..+|....+++++.+..|.+...|+.|.++.+.|+.+|
T Consensus 254 ~~~e~p-~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 254 ALQESP-SLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HhcCCc-hhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 1122222222222355677777789999999999999999999999999999999999999999999999999
Q ss_pred Hh
Q 025220 217 GY 218 (256)
Q Consensus 217 ~~ 218 (256)
+-
T Consensus 333 ~~ 334 (372)
T KOG3912|consen 333 NQ 334 (372)
T ss_pred HH
Confidence 84
No 23
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.78 E-value=8.2e-18 Score=127.61 Aligned_cols=143 Identities=33% Similarity=0.586 Sum_probs=127.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-----CCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCC-----CChhH
Q 025220 76 GFCAALFGCLATSTKTILAESLLHS-----YKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHP-----SPWSA 145 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 145 (256)
|.++++.+.++.|++.++.|+..++ .+.|+.+++.|.++.+++.++|.....|++.......... .....
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999999977 6899999999999999999999999998876442222111 13466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 146 FIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
+..++..|+++++.++..+.+++++||.+.++.+.+|.+..+++|+++++|++++.++.|.++.+.|..+|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 7889999999999999999999999999999999999999999999999999999999999999999999974
No 24
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.78 E-value=5.2e-17 Score=130.38 Aligned_cols=210 Identities=15% Similarity=0.163 Sum_probs=172.9
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l 81 (256)
++..+.+.....+|.+.-.+-++++-+...|++.++++.+++|||+++.|++++.++.+|+........+.+|....+
T Consensus 79 a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l-- 156 (293)
T COG2962 79 ALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL-- 156 (293)
T ss_pred HHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH--
Confidence 345677788888899988888999999999999999999999999999999999999999999888888888865444
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHH
Q 025220 82 FGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNF 161 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (256)
+++|+.|...-|+. +.|+.+-.....+.-.+..+....+.+..+. +... .+...+.++++.|..+..--.
T Consensus 157 --a~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~--~~~~--~~~~~~~LLv~aG~vTavpL~ 226 (293)
T COG2962 157 --ALSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFLADSGQ--FLQQ--NANSLWLLLVLAGLVTAVPLL 226 (293)
T ss_pred --HHHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHHhcCch--hhhc--CCchHHHHHHHhhHHHHHHHH
Confidence 57899998888876 7799988888888877777777666655432 1111 123346677777777775544
Q ss_pred HHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 162 SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
+.-...++.+-.+.+++++.+|....+++++++||+++..++++.+.+.+|..+|..+..++
T Consensus 227 lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~ 288 (293)
T COG2962 227 LFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT 288 (293)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456899999999999999999999999999999999999999999999999999876543
No 25
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.78 E-value=3.3e-17 Score=131.71 Aligned_cols=218 Identities=17% Similarity=0.193 Sum_probs=186.0
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc---------cc
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL---------SF 72 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~---------~~ 72 (256)
|....+...+++-|++|++-++..+.+++--+-+++.+.++.|+|++..++++.+++.+|+.+....+. +.
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 344556778889999999999999999999999999999999999999999999999999998766431 23
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCc-chhhhhccCCCChhHHHHHHH
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGS-GIMDWLSTHPSPWSAFIIIFS 151 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (256)
...|+.+....-.+.++.+..++++.+++++++.+++++.+++.++.-......-+.. +...+... .+..+.-++.
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~---hp~~~~Di~l 246 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKE---HPDVAFDILL 246 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHc---ChhHHHHHHH
Confidence 5789999999999999999999999999999999999999999888776553222221 11133333 3445777888
Q ss_pred HHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhcc
Q 025220 152 SGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 222 (256)
.+.++...|...|..+++-++.+...+++.|.+++++++.+.+|++++..||.|..+++.|+.+-...+++
T Consensus 247 ~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 247 YSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 88888888888899999999999999999999999999999999999999999999999999987776665
No 26
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.76 E-value=5.8e-18 Score=130.18 Aligned_cols=222 Identities=15% Similarity=0.250 Sum_probs=194.8
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccccc-------ch
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSF-------NM 74 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~-------~~ 74 (256)
+.+.......+..++||++++.+++.++++.+.++.....+++.|++-.+..+..+++..-+...++|.+. -.
T Consensus 75 SfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN 154 (309)
T COG5070 75 SFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN 154 (309)
T ss_pred HHHHHHHHHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC
Confidence 56677788888999999999999999999999999999999999999999999999999988888888643 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 154 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.|++|....++..|.+....|+..+-.+......++|.++.+.+++....+.+|++...+.... ........+..+|+
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~ann--l~~d~l~am~ISgl 232 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANN--LSVDSLMAMFISGL 232 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcC--CChHHHHHHHHHHH
Confidence 6999999999999999999999887667788899999999999999999999988765432221 22334567889999
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccccC
Q 025220 155 LAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQ 225 (256)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~ 225 (256)
++++.+++.-|+++-++.++.++++.++.....+.|.++|||+.+.+.+..+.+-.++..+|...+.++.+
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999987765444
No 27
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.75 E-value=1.1e-16 Score=131.62 Aligned_cols=179 Identities=9% Similarity=0.062 Sum_probs=128.7
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAAL 81 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l 81 (256)
+++.+....+.+++++++++++++++.++.|+++++++++++|||+++++++++++++.|+.++..++.+.. .+++
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l 152 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEAL 152 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHH
Confidence 345677889999999999999999999999999999999999999999999999999999987654322211 4578
Q ss_pred HHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHH
Q 025220 82 FGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNF 161 (256)
Q Consensus 82 ~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (256)
.+++++|.|.+..||..++ +..+...+ .....+...+.....+.+.... ......|..++..++++...+.
T Consensus 153 ~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~g~~t~i~~~ 223 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLLQTDFATVQQ-----TNPFPIWLLLVLAGLITGTPLL 223 (256)
T ss_pred HHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHHHhccCcccc-----cCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999997542 32222221 2222222222211111111100 0111235555566666666677
Q ss_pred HHHHHhhccChhHHHHHhhhhHHHHHHHHHhh
Q 025220 162 SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLI 193 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l 193 (256)
+....+++.++.+.+.+.+++|+++.++++++
T Consensus 224 l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 224 AFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999999999999999999999764
No 28
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.74 E-value=1.7e-18 Score=136.57 Aligned_cols=208 Identities=14% Similarity=0.158 Sum_probs=174.6
Q ss_pred HHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc--------------cc
Q 025220 7 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------------SF 72 (256)
Q Consensus 7 ~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--------------~~ 72 (256)
.....+++|++|++.+.+.++..++|.++.+++|+++||++++.+.++....+.|++++.-++. +.
T Consensus 109 tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~ 188 (346)
T KOG4510|consen 109 TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEY 188 (346)
T ss_pred hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccc
Confidence 4567789999999999999999999999999999999999999999999999999999864321 23
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHH
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
+..|-..++.+.+.-|-..++.|++.+ +.|....+.|..+++.+..++.......... +....-+++++..
T Consensus 189 ~~~gt~aai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-------P~cgkdr~l~~~l 259 (346)
T KOG4510|consen 189 DIPGTVAAISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIGAVQL-------PHCGKDRWLFVNL 259 (346)
T ss_pred cCCchHHHHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhccceec-------CccccceEEEEEe
Confidence 457888999999999999999999977 7788888899999888887766554432211 1122336678888
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 153 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
|++++..+.+....+++--|...++..+...+++.++.+++|+|.+++..|+|+++++.+.++....|..+
T Consensus 260 GvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 260 GVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred hhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 99999999888888888778888999999999999999999999999999999999999998887666543
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.74 E-value=3.5e-16 Score=130.68 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=155.5
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHH-HHHHHHHHHHHHHhccccChhh----hhhhhhhhhceeEeeecccc------
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKS-FTPATTVVLQWLVWRKYFDWRI----WASLVPIVGGILLTSVTELS------ 71 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~-~~pi~~~i~~~i~~~~~~~~~~----~~~~~l~~~Gv~~~~~~~~~------ 71 (256)
++.+....+++.+.++++++.+..+.+ +.++++.+.+.+++|||.++++ ..|+++++.|+.+....+.+
T Consensus 67 ~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~ 146 (290)
T TIGR00776 67 AFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKS 146 (290)
T ss_pred HHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccccccccc
Confidence 446666789999999999999999988 8889999999999999999999 99999999999988654321
Q ss_pred -cc-hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhH---HHHHHHHHHHHHhcCcchhhhhccCCCChhHH
Q 025220 72 -FN-MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAP---FATMILSIPALLLEGSGIMDWLSTHPSPWSAF 146 (256)
Q Consensus 72 -~~-~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (256)
.+ ..|..+++.++++|+.|.+..|+. +.||....+.+.. .+..+..+.. ....+ + .+...+
T Consensus 147 ~~~~~~Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~---~-----~~~~~~ 212 (290)
T TIGR00776 147 EFNFKKGILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH--ILAKP---L-----KKYAIL 212 (290)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH--hcccc---h-----HHHHHH
Confidence 23 679999999999999999999976 4688877444443 3333332221 10000 0 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-ccChhHHHHHhhhhHHHHHHHHHhhccCcccchhh----hhHHHHHHHHHHHHh
Q 025220 147 IIIFSSGVLAFCLNFSIFYVIH-STTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNA----VGCAITLIGCTFYGY 218 (256)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~----~G~~li~~g~~~~~~ 218 (256)
..+..|++....+...+...+ +.++.+.+++.+.+|+.+.++++++++|+.++.++ +|.++++.|+.+...
T Consensus 213 -~~~~~Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 213 -LNILPGLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred -HHHHHHHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 333377775444555556677 89999999999999999999999999999999999 999999999988654
No 30
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.69 E-value=1.2e-16 Score=126.64 Aligned_cols=214 Identities=17% Similarity=0.318 Sum_probs=175.3
Q ss_pred HHHHhhhhhccc-cchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc---cc-----------
Q 025220 7 INIVLGNVSLRY-IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LS----------- 71 (256)
Q Consensus 7 ~~~~~~~~al~~-~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~----------- 71 (256)
+.....|+++++ +|.+...++|+..++.++++++++.|+|++.+|+.+++...+|+++.+..+ ..
T Consensus 76 ~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~ 155 (330)
T KOG1583|consen 76 IVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSA 155 (330)
T ss_pred eeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcc
Confidence 344567777775 788889999999999999999999999999999999999999999987532 10
Q ss_pred ---cc--hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhh----------
Q 025220 72 ---FN--MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWL---------- 136 (256)
Q Consensus 72 ---~~--~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 136 (256)
.. ..|+.+...+.+..|...+++|...++++-|+-+.++|......+..+. ..++-..+|.
T Consensus 156 ~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf----~~~div~~~~~~~~se~~~~ 231 (330)
T KOG1583|consen 156 QSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLF----MGDDIVSHWRLAFKSESYLI 231 (330)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHH----hcchHHHHHHHHhcCcceec
Confidence 01 2588888899999999999999999999999999999999877666542 2222111111
Q ss_pred -ccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHH
Q 025220 137 -STHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTF 215 (256)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~ 215 (256)
......+..|+++++.++..+.+.-..+.+..++++.+.++.-++|..++.++|+..|+.++++..|+|..+++.|..+
T Consensus 232 p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~ 311 (330)
T KOG1583|consen 232 PLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLL 311 (330)
T ss_pred cccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHH
Confidence 1111235678899999999998888888888999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccc
Q 025220 216 YGYIRHLLS 224 (256)
Q Consensus 216 ~~~~~~~~~ 224 (256)
|....++.+
T Consensus 312 fa~~~~~~~ 320 (330)
T KOG1583|consen 312 FANVWNHPK 320 (330)
T ss_pred HHHHHcCcc
Confidence 987655443
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.63 E-value=3.6e-14 Score=111.46 Aligned_cols=203 Identities=16% Similarity=0.100 Sum_probs=158.1
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc---cccchhhHH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE---LSFNMFGFC 78 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~---~~~~~~g~~ 78 (256)
|+..+.+..+.|.+++.+|.+++..+..+.|+...+++ .||. ++...+.+.+.|+.++.-.. .+.|..|..
T Consensus 78 GvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~----sRr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~ 151 (292)
T COG5006 78 GVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLS----SRRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVA 151 (292)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHh----ccch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHH
Confidence 45677888899999999999999999999999988764 3333 34555666777776654322 456789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHH
Q 025220 79 AALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFC 158 (256)
Q Consensus 79 ~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (256)
+++.++.||+.|.+..||..+ ..|..+-+...+.++.++.+|+.....++... .+.....-+..++++..
T Consensus 152 ~Al~AG~~Wa~YIv~G~r~g~--~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~--------~p~ll~laLgvavlSSa 221 (292)
T COG5006 152 LALGAGACWALYIVLGQRAGR--AEHGTAGVAVGMLVAALIVLPIGAAQAGPALF--------SPSLLPLALGVAVLSSA 221 (292)
T ss_pred HHHHHhHHHHHHHHHcchhcc--cCCCchHHHHHHHHHHHHHhhhhhhhcchhhc--------ChHHHHHHHHHHHHhcc
Confidence 999999999999999999976 45777788888888999999888765555432 12233344445555544
Q ss_pred H-HHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 159 L-NFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 159 ~-~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
. +.+-...++|.++.+++++..+||.++.+.|++++||++|+.||.|++.++.+..-.+...
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~ 284 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA 284 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence 3 3344556899999999999999999999999999999999999999999999887655433
No 32
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.61 E-value=1.4e-15 Score=119.50 Aligned_cols=196 Identities=15% Similarity=0.244 Sum_probs=161.2
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc--------ccchhhHHHHHHHH
Q 025220 13 NVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--------SFNMFGFCAALFGC 84 (256)
Q Consensus 13 ~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--------~~~~~g~~~~l~a~ 84 (256)
..|.||++....+++.+-..+.+.+++|+++|.|..+.+..|++++++|+..+...|. +.+..|+.+.++++
T Consensus 96 V~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GA 175 (336)
T KOG2766|consen 96 VKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGA 175 (336)
T ss_pred eeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecc
Confidence 3588999999999999999999999999999999999999999999999999876652 33468999999999
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 025220 85 LATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIF 164 (256)
Q Consensus 85 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (256)
-+||..++..+.+.+ +.|-.+++...+++|.++..+. +.++..+.... +. . ......+....+-++.+...-
T Consensus 176 TlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl---~w-~-~~i~~yl~f~L~MFllYsl~p 247 (336)
T KOG2766|consen 176 TLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ-FIFERHHVSTL---HW-D-SAIFLYLRFALTMFLLYSLAP 247 (336)
T ss_pred eeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeE---ee-h-HHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999988 7899999999999999998877 56666544311 11 1 112333334455555555666
Q ss_pred HHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 165 YVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 165 ~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
.++|.++++..++--.....+++++ ..||-+.+|...+..+.+..|..+|..
T Consensus 248 il~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 248 ILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 7789899998888888889999887 778888999999999999999999944
No 33
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.60 E-value=7.9e-15 Score=116.19 Aligned_cols=218 Identities=16% Similarity=0.208 Sum_probs=183.2
Q ss_pred chHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc----cccchhhH
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE----LSFNMFGF 77 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~----~~~~~~g~ 77 (256)
+.+..+.+.++|-++.|++-++-.+.+++-.+-+++.+.++.++|..+.+..+..+..+|.++.+..| ++++..|+
T Consensus 113 a~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv 192 (367)
T KOG1582|consen 113 AFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGV 192 (367)
T ss_pred HhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeH
Confidence 45667788899999999999999999999999999999999999999999999999999999887766 45677899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHH
Q 025220 78 CAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 157 (256)
Q Consensus 78 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (256)
++...+-++.|.--.+++|.+++.+-+..++++|...++.+.++.......+. +..|..-.+.+.....+..+-+..++
T Consensus 193 ~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~-f~a~~fcaehp~~tyGy~~~~s~~gy 271 (367)
T KOG1582|consen 193 MMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGEL-FSAWTFCAEHPVRTYGYAFLFSLAGY 271 (367)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccc-hhhhHHHHhCcHhHHHHHHHHHHHhH
Confidence 99999999999999999999987777888999999999998887766655432 22333233334445666666666666
Q ss_pred HHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 158 CLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
..+......++..+|..+..+.+.|...++++|+++|..++|.+..-|..+++.|+++-.+.+
T Consensus 272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccC
Confidence 665556666888999999999999999999999999999999999999999999999866544
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.40 E-value=1.6e-12 Score=104.63 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=127.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc-------------------c--------c
Q 025220 19 IPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE-------------------L--------S 71 (256)
Q Consensus 19 ~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~-------------------~--------~ 71 (256)
++++.....++..++++++..+...++|++..++++..+...|++.....+ . +
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 466778888899999999999988888888888888888888876422111 1 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHH----HHh-cCcchhhhhccCCCChhHH
Q 025220 72 FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPA----LLL-EGSGIMDWLSTHPSPWSAF 146 (256)
Q Consensus 72 ~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~ 146 (256)
..+.|....+.+.++.+...++.|+..++.+.+ .|....+..+..+.. ... +......+....+.+...+
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTAVW 156 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchHHH
Confidence 335677778888888899999999987643222 333333333322221 111 1111111111122233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 147 IIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
..++..++ .+.+..+.+|+.++.+.+....++++++.+++++++||++++.++.|..+++.|+.+|
T Consensus 157 ~~~~~~a~----~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 157 IVGLLNVG----GGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHHHHHHh----cCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 33333333 3334566789999999999999999999999999999999999999999999987765
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.32 E-value=2.2e-11 Score=86.02 Aligned_cols=135 Identities=18% Similarity=0.135 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHH
Q 025220 76 GFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL 155 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
..++++++++++++..+..|--.+ +.||......+++.....+....+...+.+. ......+.|..++.+|+.
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~-----~~~~~~k~~lflilSGla 76 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQA-----GGEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceec-----ccccCcceehhhhHHHHH
Confidence 357899999999999999998777 7899999999999887777766665544332 212345567888899977
Q ss_pred HHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 156 AFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
+...-++.|+.++.-.+.....+.-..+++++++++++++|++|..+++|++++++|.++..
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 77777788889999999999999999999999999999999999999999999999987654
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.30 E-value=3.8e-11 Score=87.44 Aligned_cols=124 Identities=17% Similarity=0.308 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHH-HHHHHHHH
Q 025220 85 LATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL-AFCLNFSI 163 (256)
Q Consensus 85 ~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 163 (256)
++||.+.+..|+..+ +.|+....+++...+.+ .++.....+..+... .....+......+.+ ....+...
T Consensus 1 ~~~a~~~~~~k~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLK--KISPLSITFWRFLIAGI-LLILLLILGRKPFKN------LSPRQWLWLLFLGLLGTALAYLLY 71 (126)
T ss_pred ceeeeHHHHHHHHhc--cCCHHHHHHHHHHHHHH-HHHHHHhhccccccC------CChhhhhhhhHhhccceehHHHHH
Confidence 467889999999988 68999999999999987 666655555443111 112223344455555 35666677
Q ss_pred HHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 164 FYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 164 ~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
+...++.++...+.+..++|+++.++++++++|++++.+++|.++++.|+.+..
T Consensus 72 ~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 72 FYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999999999999999998754
No 37
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.27 E-value=7.6e-11 Score=89.65 Aligned_cols=209 Identities=16% Similarity=0.192 Sum_probs=152.7
Q ss_pred HHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeeccc--ccchhhHHHHHH
Q 025220 5 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTEL--SFNMFGFCAALF 82 (256)
Q Consensus 5 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~--~~~~~g~~~~l~ 82 (256)
..+....+..+++.++++.++.+..+.--|+.+++++.+++|+...+.++..+++.|++++++.|. ...+.|..+++.
T Consensus 63 Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~ 142 (290)
T KOG4314|consen 63 WTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVG 142 (290)
T ss_pred EecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHH
Confidence 344555677899999999999999999999999999999999999999999999999999987664 346899999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHH---HHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHH
Q 025220 83 GCLATSTKTILAESLLHSYKFDSINTVYYMAPFAT---MILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCL 159 (256)
Q Consensus 83 a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (256)
+++..|+|.+..|+.....+..... .+.+..++ .+.....+.......++|......+ |..+...+.+....
T Consensus 143 SA~~aAlYKV~FK~~iGnAn~Gdaa--~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~P---WG~l~G~A~L~lAF 217 (290)
T KOG4314|consen 143 SAFMAALYKVLFKMFIGNANFGDAA--HFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAP---WGCLCGAAGLSLAF 217 (290)
T ss_pred HHHHHHHHHHHHHHHhccCcchhHH--HHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCC---chhhhhHHHHHHHH
Confidence 9999999999999998643333222 22222221 1211111111222222332222222 44455555566666
Q ss_pred HHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 160 NFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 160 ~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
++.....+....|...|+-+.+..+....++.+.-+-..+...+.|-.++.+|..+.-.
T Consensus 218 N~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 218 NFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred hhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheec
Confidence 76666667788899888888888888888887777767899999999999999988654
No 38
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.09 E-value=8e-09 Score=84.98 Aligned_cols=139 Identities=9% Similarity=0.134 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcc-hhhhhccCCCChhHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSG-IMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
.|..+.+.++++|+...+..|.. . +.+|.++.+++..++.+++.+......... ........ .....+..+...+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRI-QKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCc-ccchHHHHHHHHH
Confidence 37889999999999999999983 4 589999999999999888776654433211 00000000 0111233455666
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
++......+.++..+++++.+++++.++.|+++.++++++++|+++..++.|.++.++|+.+..
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 6656666777788999999999999999999999999999999999999999999999988653
No 39
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.06 E-value=9.4e-09 Score=86.38 Aligned_cols=142 Identities=6% Similarity=0.007 Sum_probs=107.6
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHH
Q 025220 70 LSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIII 149 (256)
Q Consensus 70 ~~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
.+....|..+.+.++++|+...+..|.. . +.+|.++.+++..++.+++.+......+... ..... .....+...
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 76 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSY--LKTLI-QTPQKIFML 76 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHH--HHHHH-cCHHHHHHH
Confidence 3344679999999999999999999864 3 6899999999999998877766544322111 00000 012222233
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 150 FSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
...++.......+.++.++++++..++++.++.|+++.++++++++|+++..++.|.++.+.|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 34444444556677888999999999999999999999999999999999999999999999988764
No 40
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.94 E-value=5.7e-08 Score=83.42 Aligned_cols=137 Identities=15% Similarity=0.147 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHH
Q 025220 77 FCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLA 156 (256)
Q Consensus 77 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (256)
+...+..-++|+.+.++.|...+. +++|....+++..++.++++++....+..... .......+..+...|+++
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~-----~~~~~~~~~~l~l~g~~g 88 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL-----PPLSVSILSKIGLLGFLG 88 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhccc-----CcchHHHHHHHHHHHHHH
Confidence 456677889999999999999864 89999999999999999998887665432100 001122345566667666
Q ss_pred HHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhh------ccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 157 FCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLI------FRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l------~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
..++...+..++++++..++++.++.|+++.++++++ ++|+++..+++|.++.+.|+.+....
T Consensus 89 ~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~ 157 (358)
T PLN00411 89 SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFY 157 (358)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHc
Confidence 5555567778999999999999999999999999999 69999999999999999999886543
No 41
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.93 E-value=6.3e-08 Score=80.78 Aligned_cols=133 Identities=13% Similarity=0.181 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHH
Q 025220 77 FCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLA 156 (256)
Q Consensus 77 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (256)
..+.+.+++++|.+.+..||..++ .++ ...+....+.+.+.|........ ..+.. .....+......++..
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~--~~~--~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~ 73 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK--EPD--FLWWALLAHSVLLTPYGLWYLAQ--VGWSR---LPATFWLLLAISAVAN 73 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc--hhH--HHHHHHHHHHHHHHHHHHHhccc--CCCCC---cchhhHHHHHHHHHHH
Confidence 467899999999999999988763 233 34555666666666665542111 01111 1122244555666666
Q ss_pred HHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 157 FCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
.......+...++.++...+.+.+..|+++.++++++++|+++..+++|.++++.|+.+...
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 74 MVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67777778889999999999999999999999999999999999999999999999987653
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.92 E-value=7.2e-08 Score=78.47 Aligned_cols=200 Identities=15% Similarity=0.104 Sum_probs=146.8
Q ss_pred chHHHHHHHhhhhhccccchhHHH-HHHHHHHHHHHHHHHHHhccccChhhhh----hhhhhhhceeEeeeccccc----
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQ-TIKSFTPATTVVLQWLVWRKYFDWRIWA----SLVPIVGGILLTSVTELSF---- 72 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~-ii~~~~pi~~~i~~~i~~~~~~~~~~~~----~~~l~~~Gv~~~~~~~~~~---- 72 (256)
|++.+......+.++++++++..- +-.....+.+.++++++++|..+..++. ++++.++|+++.+..|.+.
T Consensus 52 G~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~ 131 (269)
T PF06800_consen 52 GAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSS 131 (269)
T ss_pred HHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 467778888889999999888654 4446788889999999999988877764 8889999999887755322
Q ss_pred ----chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHH
Q 025220 73 ----NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFII 148 (256)
Q Consensus 73 ----~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (256)
...|....+.+.+.|-.|.+..|.. +.|++...+=+++-..+....+.... +.... + ...+.
T Consensus 132 ~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~~~-~~~~~---~------k~~~~ 197 (269)
T PF06800_consen 132 SKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNLFS-KKPFF---E------KKSWK 197 (269)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhhcc-ccccc---c------cchHH
Confidence 2458999999999999999998764 67888887766553333333332222 11111 0 01234
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhh----hhHHHHHHHHHH
Q 025220 149 IFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNA----VGCAITLIGCTF 215 (256)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~----~G~~li~~g~~~ 215 (256)
-+..|++-...+...+...++.+..+.=.+..+..+++.+.++++++|+-+..++ +|.++++.|..+
T Consensus 198 nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 198 NILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 4566666666777777778888888888889999999999999999999887654 678888777654
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.66 E-value=2.8e-08 Score=71.24 Aligned_cols=65 Identities=26% Similarity=0.546 Sum_probs=60.0
Q ss_pred HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccc
Q 025220 6 CINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELS 71 (256)
Q Consensus 6 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~ 71 (256)
..++.+.++|+++.| +....+.++.|+++++++++++|||++++++.++.+++.|++++..+|.+
T Consensus 46 ~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 46 GVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 378899999999999 58999999999999999999999999999999999999999988876643
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.56 E-value=4.7e-07 Score=75.87 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=58.0
Q ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeee
Q 025220 4 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 67 (256)
Q Consensus 4 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~ 67 (256)
.+++....+..|+.+.|.+..+=+.....++.++++..++|||++++++.|..+++.|..++..
T Consensus 59 ~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 59 LMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred HHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence 3456667888999999999999999999999999999999999999999999999999887653
No 45
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.55 E-value=3.2e-06 Score=71.07 Aligned_cols=130 Identities=12% Similarity=0.123 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 154 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.++.+.+.++++|+...+..|...+ +.+|....+++...+.+++.+.. ..+... ... +...+..++
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~--~~~P~~~~~~R~~~a~l~l~~~~---~~~~~~------~~~---~~~~~~~~l 69 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE--SLGPVGGAAMIYSVSGLLLLLTV---GFPRLR------QFP---KRYLLAGGL 69 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc--cCChHHHHHHHHHHHHHHHHHHc---cccccc------ccc---HHHHHHHhH
Confidence 4567788999999999999998877 78999999999999888776542 111111 111 111222233
Q ss_pred HHHHHHHHHHHHh----hccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 155 LAFCLNFSIFYVI----HSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 155 ~~~~~~~~~~~~~----~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
....+..+.+... +..++...+++.++.|+++.++++++++|++++.+++|.++.++|+.+...
T Consensus 70 ~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~ 137 (295)
T PRK11689 70 LFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLG 137 (295)
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheec
Confidence 2222333333322 456788889999999999999999999999999999999999999988653
No 46
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.54 E-value=1.9e-06 Score=70.82 Aligned_cols=118 Identities=11% Similarity=0.029 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 025220 88 STKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVI 167 (256)
Q Consensus 88 a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (256)
+...+..|...++ ..++....+++...+.+++.+..... .+ .......+...++.....+...+..+
T Consensus 2 g~~~~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~--~~----------~~~~~~~~~~~~~~~~l~~~~~~~a~ 68 (260)
T TIGR00950 2 GTTGVVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR--PP----------LKRLLRLLLLGALQIGVFYVLYFVAV 68 (260)
T ss_pred cchHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc--cC----------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666766543 67999999999998888777654332 10 11112333444444445666777889
Q ss_pred hccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 168 HSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 168 ~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
+++++...+++..+.|+++.+++.++++|++++.+++|..+.++|+.+...
T Consensus 69 ~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 69 KRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred HhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 999999999999999999999999999999999999999999999988753
No 47
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.52 E-value=1e-05 Score=67.92 Aligned_cols=129 Identities=13% Similarity=0.011 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHH
Q 025220 78 CAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 157 (256)
Q Consensus 78 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (256)
...+...+.|+...+..|.... +.+|....+++..++++++++.......... ....+......|.+..
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~---------~~~~~~~~~~~g~~~~ 79 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLLLRGHPLP---------TLRQWLNAALIGLLLL 79 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---------cHHHHHHHHHHHHHHH
Confidence 4466788999999999998876 7899999999999999888877654321100 1112333444554443
Q ss_pred -HHHHHHHHHh-hccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 158 -CLNFSIFYVI-HSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 158 -~~~~~~~~~~-~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
......+... ++.++...+++.++.|+++.+++.+ ++|+++..++.|..+.++|+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 80 AVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 3334445555 8888889999999999999999985 7999999999999999999988753
No 48
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.50 E-value=6.3e-06 Score=67.07 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=108.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHH
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
+..|+++++.+-+.|+....+.|.+. +.++.++..++.+.+.+.+.....+....... .+ ....++.+..+...
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~--~~-~~~~p~~~~~~~l~ 78 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE---PLPATEILAHRVIWSFPFMLALLFLLRQWREL--KQ-LLKQPKTLLMLALT 78 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HH-HHhCcHHHHHHHHH
Confidence 35799999999999999999999774 67999999999999999887776665443221 11 12233445555555
Q ss_pred HHHHHHHHHHH-HHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 153 GVLAFCLNFSI-FYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 153 ~~~~~~~~~~~-~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
+..-. .|... .|..++-....+|.-.+.+|.+.+++|.++++|+++..|++..++..+|+..-.+.
T Consensus 79 a~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 79 ALLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 54443 34433 36778888999999999999999999999999999999999999999999876543
No 49
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.47 E-value=8.4e-06 Score=68.62 Aligned_cols=124 Identities=11% Similarity=0.101 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHH
Q 025220 78 CAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAF 157 (256)
Q Consensus 78 ~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (256)
.+.+.++++|+...+..|...+ +.+|....+++..++.+.+++... ... .. +..+...+.+..
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~~~l~~~~~---~~~---------~~---~~~~~~~g~~~~ 69 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH--NMPPLMLAGLRFMLVAFPAIFFVA---RPK---------VP---LNLLLGYGLTIS 69 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHhc---CCC---------Cc---hHHHHHHHHHHH
Confidence 5678899999999999998876 789999999999987665544321 111 01 111222333332
Q ss_pred HHH-HHHHHHhhc-cChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 158 CLN-FSIFYVIHS-TTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 158 ~~~-~~~~~~~~~-~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
..+ ...+...++ .++...+++..+.|+++.++++++++|+++..+++|.++.++|+.+...
T Consensus 70 ~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 70 FGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 222 233445565 5778889999999999999999999999999999999999999887653
No 50
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.46 E-value=1.5e-05 Score=68.61 Aligned_cols=134 Identities=8% Similarity=-0.066 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHH
Q 025220 77 FCAALFGCLATSTKTILAESLLHSYKFD-SINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL 155 (256)
Q Consensus 77 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
..+.+.--.+...+++..|+..+ ..+ |+.+..++..++.+...+.... ......+. ......+..++..|++
T Consensus 51 ~~~~~~wy~~s~~~~~~nK~vl~--~~~~P~~l~~~~~~~~~l~~~~~~~~-~~~~~~~~----~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 51 ALLFLTWYALNVLYVVDNKLALN--MLPLPWTISSLQLFVGWLFALLYWAT-GFRKIPRI----KSLKLFLKNFLPQGLC 123 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--hCChhHHHHHHHHHHHHHHHHHHHHh-CCCCCCCC----CCHHHHHHHHHHHHHH
Confidence 33444444445666788888887 568 9999999999987665443321 11100000 0011234566677777
Q ss_pred HHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 156 AFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
+...+...+..++++++..++++..+.|+++++++.++++|+++..++.|.+++++|+.+..
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 76655556677899999999999999999999999999999999999999999999999765
No 51
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.43 E-value=1.3e-05 Score=58.57 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 154 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.|+.+.+.+.++.+..+++.|+-.++. .+...... .. ... .. .. .+ ...+..|+
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~--g~~~~~~~-~~----~~~-~~-~~-------------~p----~~~i~lgl 55 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRL--PLLSHAWD-FI----AAL-LA-FG-------------LA----LRAVLLGL 55 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhC--CCccchhH-HH----HHH-HH-Hh-------------cc----HHHHHHHH
Confidence 477889999999999999999887632 22211111 00 000 00 00 00 01223333
Q ss_pred HHHHH-HHHHHHHhhccChhHHHHHhhhhHHHHHHHHHh--hccCcccchhhhhHHHHHHHHHHHHh
Q 025220 155 LAFCL-NFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWL--IFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 155 ~~~~~-~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~--l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
..+.. ...+...+++.+...+..+....++...+.++. ++||++|+.+++|.+++++|+++.++
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 33333 334556789999888888888887777777775 89999999999999999999999865
No 52
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.35 E-value=3.6e-05 Score=64.90 Aligned_cols=122 Identities=5% Similarity=-0.060 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 025220 87 TSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYV 166 (256)
Q Consensus 87 ~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (256)
...++++.|+..++ -..|..+.+++...+.+...+... ..... ........+..++..|++........+..
T Consensus 14 ~~~~~~~NK~~l~~-~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 85 (302)
T TIGR00817 14 NVYFNIYNKKLLNV-FPYPYFKTLISLAVGSLYCLLSWS-SGLPK------RLKISSALLKLLLPVAIVHTIGHVTSNVS 85 (302)
T ss_pred HHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHHHHH-hCCCC------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777762 256888888888877665543311 11110 01112333555666777766666677788
Q ss_pred hhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 167 IHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 167 ~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
++++++..++++..+.|+++.+++.++++|+++..++.|.++++.|+.+.
T Consensus 86 l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 86 LSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999764
No 53
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.31 E-value=2.2e-05 Score=56.16 Aligned_cols=73 Identities=22% Similarity=0.399 Sum_probs=58.6
Q ss_pred HHHHHHHHHH-HHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 148 IIFSSGVLAF-CLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 148 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
.....|.++. ......++..++.++ ....+..+.|+++.+++.++++|++++.++.|.+++++|+.+......
T Consensus 36 ~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 36 WLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3444455444 444555667888885 777999999999999999999999999999999999999999876443
No 54
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.31 E-value=4.4e-07 Score=65.75 Aligned_cols=61 Identities=23% Similarity=0.487 Sum_probs=57.6
Q ss_pred HHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 5 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 5 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
.+....+.++++++++++..+.+.++.|+++.+++++++||+++++++.|+.+++.|+.++
T Consensus 64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4778899999999999999999999999999999999999999999999999999998754
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.28 E-value=1.3e-06 Score=62.25 Aligned_cols=64 Identities=20% Similarity=0.360 Sum_probs=59.7
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 66 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~ 66 (256)
+++++.+.+...+++.+|++.+..+-++.++++.+++++++|||+++++++|+.+++.|++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 4578888999999999999999999999999999999999999999999999999999987654
No 56
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.20 E-value=0.00022 Score=60.55 Aligned_cols=215 Identities=10% Similarity=0.083 Sum_probs=135.1
Q ss_pred chHHHHHHHhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhcccc---C----hhhhhhhhhhhhceeEeee----cc
Q 025220 2 SFVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYF---D----WRIWASLVPIVGGILLTSV----TE 69 (256)
Q Consensus 2 ~~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~~~~---~----~~~~~~~~l~~~Gv~~~~~----~~ 69 (256)
|++.+........++++++++...-+ ..+.-+...++..++++|.. + ..-..+++++++|+++.+. .|
T Consensus 80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~ 159 (345)
T PRK13499 80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45677788888899999999976544 46788889999999988654 2 3356788899999998876 33
Q ss_pred c---------ccchhhHHHHHHHHHHHHHHH-------HHHHHHhccCCCChHHHHHHHhH---HHHHHHHHHHHHh---
Q 025220 70 L---------SFNMFGFCAALFGCLATSTKT-------ILAESLLHSYKFDSINTVYYMAP---FATMILSIPALLL--- 127 (256)
Q Consensus 70 ~---------~~~~~g~~~~l~a~~~~a~~~-------v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--- 127 (256)
. .....|+++++++.+.++.|+ ...+.... .+.++.....-+.. .+..+.-+.....
T Consensus 160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~ 238 (345)
T PRK13499 160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAA-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLA 238 (345)
T ss_pred cccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 123579999999999999999 54444322 35666655544444 3333322211111
Q ss_pred cCcchhhhhccCCCC----hhHHHHHHHHHHHHHHHHHHHHHHhhccChh----HHHHHhhhhHHHHHHHHHhhccCccc
Q 025220 128 EGSGIMDWLSTHPSP----WSAFIIIFSSGVLAFCLNFSIFYVIHSTTAV----TFNVAGNLKVAVAVLVSWLIFRNPIS 199 (256)
Q Consensus 128 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~s~~~~l~~v~~~l~~~~l~~e~~s 199 (256)
.+.+..... ....+ .+-...-++.|+.-+..+.......++.+.. ...+-+.+..+++.+.++ +++|.-+
T Consensus 239 k~~~~~~~~-~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~ 316 (345)
T PRK13499 239 KNKDLSLKA-DFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKG 316 (345)
T ss_pred hCCCcccch-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccC
Confidence 111111011 11111 1223334555666555555555544444222 333555778899999998 4899777
Q ss_pred ------chhhhhHHHHHHHHHHHHhh
Q 025220 200 ------GMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 200 ------~~~~~G~~li~~g~~~~~~~ 219 (256)
..-+.|.++++.|..+....
T Consensus 317 a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 317 ASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhhc
Confidence 45689999999999887653
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.14 E-value=5.1e-05 Score=63.58 Aligned_cols=131 Identities=14% Similarity=0.117 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHH
Q 025220 76 GFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL 155 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
|.++++.++++|+...+..|+.. +.++.+.. ...++..+..........+.. .....+..-+..|+.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~--------~~~~~~~~g~l~G~~ 68 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG---GGPYSQTL--GTTFGALILSIAIAIFVLPEF--------WALSIFLVGLLSGAF 68 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC---CCHHHHHH--HHHHHHHHHHHHHHHHhCCcc--------cccHHHHHHHHHHHH
Confidence 57889999999999999999874 45665554 344444444433333222211 113344556666666
Q ss_pred HHHHHHHHHHHhhccChhHHHHHhh-hhHHHHHHHHHhhccCcccchh----hhhHHHHHHHHHHHHhh
Q 025220 156 AFCLNFSIFYVIHSTTAVTFNVAGN-LKVAVAVLVSWLIFRNPISGMN----AVGCAITLIGCTFYGYI 219 (256)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~s~~~~-l~~v~~~l~~~~l~~e~~s~~~----~~G~~li~~g~~~~~~~ 219 (256)
-...|...+...++.+....-.+.+ +.++++.+++.++++|+.+..+ ++|.++++.|+.+....
T Consensus 69 w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~ 137 (290)
T TIGR00776 69 WALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRS 137 (290)
T ss_pred HHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEec
Confidence 6667788888899988888777767 8888999999999999999999 99999999999887543
No 58
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=98.13 E-value=0.00013 Score=61.92 Aligned_cols=139 Identities=12% Similarity=0.205 Sum_probs=93.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCC-hHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFD-SINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
.+.+++-.-+++-+...+..+.+.++ +.+ |..-.++......++..+......+. ..+....... |+..+..+
T Consensus 13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~--~~~~~~~~~~---~w~y~lla 86 (334)
T PF06027_consen 13 IVLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALVYTPILLYRRGF--KKWLKVLKRP---WWKYFLLA 86 (334)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHHHhhhhhhcccc--ccchhhcchh---HHHHHHHH
Confidence 45555555566666666666666543 333 33333333333334444443332222 1222211111 34444457
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
++-...|+......++++.+...++.....+++.+++++++++++++.+++|.++++.|+.+....
T Consensus 87 ~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 87 LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 888888999999999999999999999999999999999999999999999999999999886554
No 59
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=98.13 E-value=0.00013 Score=61.52 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhccCCCC--hHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHH
Q 025220 87 TSTKTILAESLLHSYKFD--SINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIF 164 (256)
Q Consensus 87 ~a~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (256)
+-.+.+.+|++.++...+ +..+.+.+.....+...+......... ....+ +.-....+++......+.+
T Consensus 12 ~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF08449_consen 12 CCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK------SRKIP---LKKYAILSFLFFLASVLSN 82 (303)
T ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC------CCcCh---HHHHHHHHHHHHHHHHHHH
Confidence 444668888888655445 778888888877766665544433111 11112 2233444556666666777
Q ss_pred HHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhcc
Q 025220 165 YVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 165 ~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 222 (256)
..+++.+..+..+....+++.++++++++++++.+..++.+.+++.+|+.++...+.+
T Consensus 83 ~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~ 140 (303)
T PF08449_consen 83 AALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSS 140 (303)
T ss_pred HHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccc
Confidence 8889999999999999999999999999999999999999999999999998875543
No 60
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=98.06 E-value=0.00034 Score=51.76 Aligned_cols=131 Identities=13% Similarity=0.200 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHH
Q 025220 77 FCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLA 156 (256)
Q Consensus 77 ~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (256)
..+++.+..+-+.+..+.-++.++.+ ||+...+.....+.+.+.......++.+... ..+.+ | +....|+++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~~~~~---~~~~p---~-w~~lGG~lG 74 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRPSLAS---LSSVP---W-WAYLGGLLG 74 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhcccccch---hccCC---h-HHhccHHHH
Confidence 56788888999999999988887432 5999999999999988887777766553222 22223 2 233488888
Q ss_pred HHHHHHHHHHhhccChhHHHHHhhh-hHHHHHHHHHh-h---ccCcccchhhhhHHHHHHHHHH
Q 025220 157 FCLNFSIFYVIHSTTAVTFNVAGNL-KVAVAVLVSWL-I---FRNPISGMNAVGCAITLIGCTF 215 (256)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~s~~~~l-~~v~~~l~~~~-l---~~e~~s~~~~~G~~li~~g~~~ 215 (256)
..+-.......++.++.....+... +-+.+.+++.+ + -.+++++.+++|.++++.|+.+
T Consensus 75 ~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 75 VFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 8887777788899988877776666 67777888875 2 3478899999999999999863
No 61
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.01 E-value=4.7e-06 Score=59.34 Aligned_cols=65 Identities=20% Similarity=0.210 Sum_probs=60.3
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 67 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~ 67 (256)
+.-+++..+++.|++--+++...=+..+.|.++++++++++|||++..+|+|+.+++.|+++++.
T Consensus 75 la~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 75 LAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 45577889999999999999999999999999999999999999999999999999999998753
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=6e-05 Score=62.21 Aligned_cols=66 Identities=9% Similarity=0.137 Sum_probs=58.5
Q ss_pred HHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc
Q 025220 4 VFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 69 (256)
Q Consensus 4 ~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 69 (256)
.+.+.-...+-|..+-|.+..+-+.++..+..++++..++|||+++...+|..++++|..+++...
T Consensus 73 tm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 73 TMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred HHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 345556677888999999999999999999999999999999999999999999999988877644
No 63
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.95 E-value=0.00011 Score=52.21 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 162 SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
.....+++.+...+-....+.++.+.++|++++||++++.+++|.++++.|+.+..
T Consensus 53 ~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 53 LWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34456788888888888889999999999999999999999999999999998764
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.90 E-value=0.00087 Score=55.59 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=96.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHH
Q 025220 74 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 74 ~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
..+....+..++.++......|+.... ..+......++.........+.... +.... ..... . .+...+..+
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~-~--~~~~~~~~~ 77 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLLLL-EPRGL---RPALR-P--WLLLLLLAL 77 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHh-hcccc---ccccc-c--hHHHHHHHH
Confidence 356677788889999999999988763 3556666665666665552222211 11000 00110 1 233444444
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHH-hhccCcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSW-LIFRNPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~-~l~~e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
+.........+..++++++.....+....|++..+++. ++++|+++..++.|..+.+.|+.+......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~ 146 (292)
T COG0697 78 LGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGG 146 (292)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCC
Confidence 44445556667779999999999999999999999996 777999999999999999999999765433
No 65
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.82 E-value=0.00013 Score=59.41 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhcc
Q 025220 146 FIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 222 (256)
.+.....+++-...|.+.+..+++.+|.+..++...+.+++.++++++++++++..||++..+.+.|+.+.+.....
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 45667777777788888999999999999999999999999999999999999999999999999999998765443
No 66
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.72 E-value=6.6e-05 Score=54.82 Aligned_cols=66 Identities=18% Similarity=0.254 Sum_probs=59.5
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHH--HhccccChhhhhhhhhhhhceeEeeec
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWL--VWRKYFDWRIWASLVPIVGGILLTSVT 68 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i--~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 68 (256)
.++++.+.+++.+++..|++.+.-+.+..+.++.+.++. +++|+++..+++|+.++++|+.++...
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 467889999999999999999999999999888888885 899999999999999999999887643
No 67
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.69 E-value=0.0021 Score=53.92 Aligned_cols=125 Identities=14% Similarity=0.051 Sum_probs=88.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHH
Q 025220 74 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 74 ~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
..|..+.+.++++++......|...+ +.+|..+.+++..++++++++...... ... ....+......|
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~--~~~~~~~~~~R~~~a~l~l~~~~~~~~-~~~---------~~~~~~~~~~~g 78 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP--LVGAPGVTALRLALGTLILIAIFKPWR-LRF---------AKEQRLPLLFYG 78 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH--HcCHHHHHHHHHHHHHHHHHHHHhHHh-ccC---------CHHHHHHHHHHH
Confidence 56889999999999999999998887 689999999999999888775532111 100 111122333444
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
++....+...++.+++.++...+++....|+++.+++. |++. +..+..+.++|+.+.
T Consensus 79 ~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~~----~~~~--~~~~~~i~~~Gv~li 135 (293)
T PRK10532 79 VSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFSS----RRPV--DFVWVVLAVLGLWFL 135 (293)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc----CChH--HHHHHHHHHHHHhee
Confidence 44445556667778999999999999999999988762 4433 345556666776654
No 68
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.66 E-value=0.00021 Score=58.11 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHH
Q 025220 76 GFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL 155 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
|++.++.|+++++...+=.||.-. -|++-..+++.....+......+..+.+.+. ...++.|.+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~---gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~-------------p~amlgG~l 64 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT---GDGFFFQWVMCSGIFLVGLVVNLILGFPPFY-------------PWAMLGGAL 64 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC---CCcHHHHHHHHHHHHHHHHHHHHhcCCCcce-------------eHHHhhhhh
Confidence 567889999999999999997743 4777777777766655555555544443322 233445555
Q ss_pred HHHHHHHHHHHhhccC-hhHHHHHhhhhHHHHHHHHHh-hccCcc-----cchhhhhHHHHHHHHHHHHhhhccc
Q 025220 156 AFCLNFSIFYVIHSTT-AVTFNVAGNLKVAVAVLVSWL-IFRNPI-----SGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 156 ~~~~~~~~~~~~~~~~-~~~~s~~~~l~~v~~~l~~~~-l~~e~~-----s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
-...|.+..-.++..+ +.-..+.+...-+.+...+-+ +|+++. .....+|.+++++|..+|..-|...
T Consensus 65 W~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 65 WATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 5555555555555543 334445555666777777755 565432 5578899999999999998765544
No 69
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.64 E-value=0.00073 Score=48.52 Aligned_cols=54 Identities=17% Similarity=0.258 Sum_probs=44.2
Q ss_pred HhhccC-hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 166 VIHSTT-AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 166 ~~~~~~-~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
.+++.+ ...+++...+..+.+.+.++++|+|++|+.+++|+.++++|+...+..
T Consensus 50 al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 50 AVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 345553 335666667788999999999999999999999999999999987543
No 70
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.60 E-value=5.2e-06 Score=65.79 Aligned_cols=202 Identities=14% Similarity=0.114 Sum_probs=139.2
Q ss_pred hHHHHHHHhhhhhccccchhHHHH-HHHHHHHHHHHHHHHHhccccChhhh----hhhhhhhhceeEeeecccc------
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQT-IKSFTPATTVVLQWLVWRKYFDWRIW----ASLVPIVGGILLTSVTELS------ 71 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~i-i~~~~pi~~~i~~~i~~~~~~~~~~~----~~~~l~~~Gv~~~~~~~~~------ 71 (256)
++-+.....++.|+++++++.+.= -..+..+-+.+++++.++|..+..+. .++.+.+.|+.+-++.|.+
T Consensus 67 ~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~ 146 (288)
T COG4975 67 AFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEEN 146 (288)
T ss_pred hHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccC
Confidence 344555667788999998887643 34567778889999999999887765 6788999999998887631
Q ss_pred --cchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHH
Q 025220 72 --FNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIII 149 (256)
Q Consensus 72 --~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (256)
..-.|....+.+.+.|-.|.+..+.. +.|.+....-+..-.....+......+..... ...+.-
T Consensus 147 ~~n~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~~~~~~~~----------K~t~~n 212 (288)
T COG4975 147 PSNLKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFFKMEKRFN----------KYTWLN 212 (288)
T ss_pred hHhhhhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhcccccchH----------HHHHHH
Confidence 12358888888999999999988876 45666555554443222223233322212111 123455
Q ss_pred HHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhh----hhHHHHHHHHHHHHh
Q 025220 150 FSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNA----VGCAITLIGCTFYGY 218 (256)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~----~G~~li~~g~~~~~~ 218 (256)
+..|+.-...|..++...++.+..+.=.++-+-.+++.+=++++++|+-|..++ +|.++++.|..+...
T Consensus 213 ii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~ 285 (288)
T COG4975 213 IIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGI 285 (288)
T ss_pred HhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhe
Confidence 667777777777777777776665555566677788889999999999999876 677777777766543
No 71
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.52 E-value=0.0053 Score=43.30 Aligned_cols=52 Identities=15% Similarity=0.444 Sum_probs=44.0
Q ss_pred HhhccC-hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 166 VIHSTT-AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 166 ~~~~~~-~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
.+|+.+ ...+++...+..+.+.+.++++|+|++++.+++|+.+++.|+...+
T Consensus 55 al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 55 AVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 345554 3467788888889999999999999999999999999999998764
No 72
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.52 E-value=0.00019 Score=51.52 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=59.2
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 67 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~ 67 (256)
++++.++.+...+++++|++.+..+- ...-+.++++++++++|+++..+++++.++++|++.+-.
T Consensus 38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 56888999999999999999998885 689999999999999999999999999999999987643
No 73
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.47 E-value=0.012 Score=43.68 Aligned_cols=138 Identities=13% Similarity=0.114 Sum_probs=93.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHH
Q 025220 74 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 74 ~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
+...+.++.+..+...+.-..-++.+..+ +|....+.....+...+.......++.+... .....+ ++..+.|
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a--~~~~~p----wW~~~GG 76 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLA--AVASAP----WWAWIGG 76 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh--hccCCc----hHHHHcc
Confidence 35577888899999999999888877433 6888888888888888777766655433222 122223 2344556
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhh-hHHHHHHHHHhhcc----CcccchhhhhHHHHHHHHHHHHh
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNL-KVAVAVLVSWLIFR----NPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~v~~~l~~~~l~~----e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
+++..+-........+.++.....+-.. +-+.+.+++.+=+. .+++..++.|.+++++|+.+.+.
T Consensus 77 ~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 77 LLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred chhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 7777666666666777776655444433 66666776655443 58899999999999999666544
No 74
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.37 E-value=0.0026 Score=45.01 Aligned_cols=53 Identities=11% Similarity=0.291 Sum_probs=44.2
Q ss_pred HhhccCh-hHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 166 VIHSTTA-VTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 166 ~~~~~~~-~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
.+++.+. ..+++...+..+.+.++++++|+|++++.+++|+.+++.|+...+.
T Consensus 50 al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 50 TLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3566543 3566667778889999999999999999999999999999999864
No 75
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.34 E-value=0.0004 Score=49.18 Aligned_cols=65 Identities=20% Similarity=0.395 Sum_probs=57.9
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIK-SFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 67 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~-~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~ 67 (256)
+++++++.+...+++.+|++.+.-+- ...-+.+.++++++++|++++.++.++.++++|++.+-.
T Consensus 38 ~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 46788888889999999999998885 478889999999999999999999999999999987643
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.31 E-value=0.0031 Score=44.19 Aligned_cols=53 Identities=11% Similarity=0.139 Sum_probs=45.4
Q ss_pred HhhccC-hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 166 VIHSTT-AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 166 ~~~~~~-~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
.+|+.+ ...+++..-+..+.+.+.++++|+|++++.+++|+.+++.|+...+.
T Consensus 49 al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 49 AMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 345553 45678888889999999999999999999999999999999998754
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.25 E-value=0.0031 Score=43.89 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=46.1
Q ss_pred HhhccC-hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 166 VIHSTT-AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 166 ~~~~~~-~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
.+|+.+ .+.+++..-.-.+.+.+.++++|+|++++.+++|..++++|+...+..
T Consensus 50 alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 50 ALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 346654 346788888899999999999999999999999999999999987653
No 78
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.25 E-value=0.00072 Score=47.41 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=56.4
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHH-HHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKS-FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~-~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
++++.++.+...+++.+|++.+-.+-. ...+.+.+.+++++||++++.++.++.+.+.|++.+
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l 100 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGL 100 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhh
Confidence 467888888999999999998776665 788999999999999999999999999999998765
No 79
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.18 E-value=0.00089 Score=47.22 Aligned_cols=63 Identities=16% Similarity=0.337 Sum_probs=55.2
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHH-HHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKS-FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~-~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
+.++.++.+...+++.+|++.+-.+-. ...+.+.+.+++++||++++.++.++.+++.|++.+
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 467778888889999999998776654 778889999999999999999999999999998753
No 80
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.11 E-value=0.01 Score=50.63 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHH--HHHHHHH-HhcCcchhhhhccCCCChhHHHHHH
Q 025220 74 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATM--ILSIPAL-LLEGSGIMDWLSTHPSPWSAFIIIF 150 (256)
Q Consensus 74 ~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (256)
..|+++.+++++|++.+.+-.||. + .-+++.. |. ..+.. ++.|... ....+++.+.... .+...+..-.
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~~-k---~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~--~~~~~~~~~~ 77 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKKV-K---KWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSS--FSGSTLLPVF 77 (345)
T ss_pred HHHHHHHHHHHHHhhccccccccc-C---CCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHh--cCHHHHHHHH
Confidence 579999999999999999999983 3 2444544 33 22221 1122111 1111333322222 2344566677
Q ss_pred HHHHHHHHHHHHHHHHhhccChhH-HHHHhhhhHHHHHHHHHhhccCcc-------cchhhhhHHHHHHHHHHHHhhhcc
Q 025220 151 SSGVLAFCLNFSIFYVIHSTTAVT-FNVAGNLKVAVAVLVSWLIFRNPI-------SGMNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~l~~v~~~l~~~~l~~e~~-------s~~~~~G~~li~~g~~~~~~~~~~ 222 (256)
++|++-...|...+...++.+... ..+..-+.-+.+.+++.+++||=. ....++|.+++++|+.+..+.-.+
T Consensus 78 l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~ 157 (345)
T PRK13499 78 LFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQL 157 (345)
T ss_pred HHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 777777777777777777776543 344445678889999999998632 234678999999999998875433
No 81
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.047 Score=46.17 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc--CCCChHHHHHHHhHHHHHHHHHHHHHhcCc---chhh-hhccCCCChhHHHHHHHH
Q 025220 79 AALFGCLATSTKTILAESLLHS--YKFDSINTVYYMAPFATMILSIPALLLEGS---GIMD-WLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 79 ~~l~a~~~~a~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~ 152 (256)
..+...+-.+......|+..+. .+..|.+.++..-+.-.++.....+..++. .... ........+.-..-+...
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vP 98 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVP 98 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHH
Confidence 3344445555555556655432 357788888777776666555444443311 1110 000001111123344555
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 153 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
+++-...|-..|....+.+|.++.+...++...+.++++++++++++..||...++...|+...+
T Consensus 99 a~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 99 ALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 55555666677788999999999999999999999999999999999999999999999999987
No 82
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.00 E-value=0.0018 Score=48.60 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=58.6
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTS 66 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~ 66 (256)
++........+..++++++-+.+++.....+.+.++++++++|+++..++.|+.+++.|.++..
T Consensus 89 ~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 89 LLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 4555677888899999999999999999999999999999999999999999999999988754
No 83
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0019 Score=45.00 Aligned_cols=63 Identities=16% Similarity=0.243 Sum_probs=55.5
Q ss_pred hHHHHHHHhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
++++.++.+-..+++.+|++.+-.+ .....+.+++.++++++|+.+..+++++.+.+.|++.+
T Consensus 38 v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~L 101 (106)
T COG2076 38 VGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGL 101 (106)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHh
Confidence 4678888889999999999987655 45788899999999999999999999999999998754
No 84
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.90 E-value=0.003 Score=43.36 Aligned_cols=56 Identities=9% Similarity=0.247 Sum_probs=35.0
Q ss_pred hHHHHHHHhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccChhhhhhhhhh
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPI 58 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~ 58 (256)
.+++.++.+...+++.+|.+.+--+ .....+.+.+.+..+++|+++..++.++.++
T Consensus 37 ~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 37 VGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 3688899999999999999998555 5699999999999999999999999998763
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.67 E-value=0.00095 Score=53.91 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 154 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
.|..+.-.+ ..+-...+..++.. ..||...-....+.......|.......+- +-+ ...+ -.+++=|+
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~---e~~p~e~a~~r~l~~mlit~pcliy~~~~v---~gp---~g~R--~~LiLRg~ 105 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVL---ENDPMELASFRLLVRMLITYPCLIYYMQPV---IGP---EGKR--KWLILRGF 105 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhh---ccChhHhhhhhhhhehhhhheEEEEEeeee---ecC---CCcE--EEEEeehh
Confidence 566666666 66666667777665 347777766664443333333322222111 000 0111 12334455
Q ss_pred HHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhcc
Q 025220 155 LAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 222 (256)
.++..-+..|+..++.+-..+.++....|+++.++++.+++|+.|.....|..+.+.|+++..+..-.
T Consensus 106 mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFl 173 (346)
T KOG4510|consen 106 MGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFL 173 (346)
T ss_pred hhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcc
Confidence 55555556677778888888889999999999999999999999999999999999999998765443
No 86
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.38 E-value=0.033 Score=45.78 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHh-hhhHHHHHHHHHhhccCcccchhh----hhHHHHHHHHHHHHh
Q 025220 144 SAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAG-NLKVAVAVLVSWLIFRNPISGMNA----VGCAITLIGCTFYGY 218 (256)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~l~~v~~~l~~~~l~~e~~s~~~~----~G~~li~~g~~~~~~ 218 (256)
..++.-.++|++-...+...+...++.+..++..+. .++-+.+.++++++|||--+..++ .+.+++++|+.+.++
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 346667788888888888888888887777666655 447788999999999997766554 477888899988776
Q ss_pred hhccc
Q 025220 219 IRHLL 223 (256)
Q Consensus 219 ~~~~~ 223 (256)
.++++
T Consensus 123 ~~~~~ 127 (269)
T PF06800_consen 123 QDKKS 127 (269)
T ss_pred ccccc
Confidence 54433
No 87
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.31 E-value=0.039 Score=46.43 Aligned_cols=117 Identities=16% Similarity=0.168 Sum_probs=77.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHH
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
...|..+++.++++.+...+++||-..+.+.++..-- .. +...+ ..+ .|+.-...
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~--------~~~~l--------------~~~-~W~~G~~~ 59 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SG--------GRSYL--------------RRP-LWWIGLLL 59 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--ch--------hhHHH--------------hhH-HHHHHHHH
Confidence 3579999999999999999999987643211111000 00 00000 001 12222222
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 153 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
...+...+ +......++...+.++.+.-++..+++..+++|+++...++|..+++.|..+.-
T Consensus 60 ~~~g~~~~---~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 60 MVLGEILN---FVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HhcchHHH---HHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 22333333 334566677788888889999999999999999999999999999999988764
No 88
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.61 E-value=0.065 Score=36.71 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=25.3
Q ss_pred HHhhccChh-HHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHH
Q 025220 165 YVIHSTTAV-TFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAIT 209 (256)
Q Consensus 165 ~~~~~~~~~-~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li 209 (256)
..+|+.+.. .+.+...+..+...+.|+++|+|++|+.+++|+.++
T Consensus 48 ~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 48 LALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 345666443 456777788899999999999999999999999875
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.51 E-value=0.031 Score=39.56 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=52.1
Q ss_pred HHHHHHhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 5 FCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 5 ~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
+-.....+++.+...|.+.+.-+ +++.=++|++.++++.+|..+++.+.|+.+++.|+.+.
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 44455667778888888887766 58999999999999999999999999999999999875
No 90
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=95.33 E-value=0.026 Score=47.97 Aligned_cols=79 Identities=6% Similarity=-0.009 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 145 AFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
..-.-+..|.+-+..++.....+++++.....++.....+++..++..+.+|++|..+.++..+.+.|+++.++.+.++
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 3445667778888889988889999999999999999999999999999999999999999999999999988766544
No 91
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.30 E-value=0.029 Score=45.22 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=51.6
Q ss_pred HHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeE
Q 025220 7 INIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 64 (256)
Q Consensus 7 ~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~ 64 (256)
+-+.+...++..+|..++.++-++.|.+.++.++++++|++|..||.++..++.+.+-
T Consensus 222 lPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 222 LPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred cchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 3445666899999999999999999999999999999999999999999888877653
No 92
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=95.07 E-value=0.099 Score=41.76 Aligned_cols=129 Identities=11% Similarity=0.128 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhcc-CCCC---------hHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHH
Q 025220 85 LATSTKTILAESLLHS-YKFD---------SINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGV 154 (256)
Q Consensus 85 ~~~a~~~v~~~~~~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (256)
+||=.|.+.++|+.++ ++.+ ...+++++...-.+..=....+.+....+ ..+.+.+ ..+-
T Consensus 23 vCYF~yGI~QEkitrGkYg~~g~~~E~FTfalaLVf~qC~~N~vfAkvl~~ir~~~~~D--------~t~~~~Y--aAcs 92 (337)
T KOG1580|consen 23 VCYFVYGIQQEKITRGKYGLPGESIEKFTFALALVFFQCTANTVFAKVLFLIRKKTEID--------NTPTKMY--AACS 92 (337)
T ss_pred heehhhhhHHHHhhccccCCCCcchheehHHHHHHHHHHHHHHHHHHhheeeccccccc--------CCcchHH--HHHH
Confidence 5788888999998863 2221 23344554444443332222222212221 1112222 2233
Q ss_pred HHHHHHH-HHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 155 LAFCLNF-SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 155 ~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
.+++..+ .....++..+=-+.-+-...+|+-..++|+++.+...++.......+++.|+.++.+..++.
T Consensus 93 ~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv 162 (337)
T KOG1580|consen 93 ASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKV 162 (337)
T ss_pred HHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhcccccc
Confidence 3333332 33455666665566677788999999999999999999999999999999999998764443
No 93
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=94.26 E-value=0.056 Score=43.34 Aligned_cols=60 Identities=5% Similarity=-0.017 Sum_probs=53.4
Q ss_pred HHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeE
Q 025220 5 FCINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 64 (256)
Q Consensus 5 ~~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~ 64 (256)
.+....+..+.+++.+..+..+...+.++++.++++++++++++..++.|..+.+.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 344445667889999999999999999999999999999999999999999999999865
No 94
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=93.44 E-value=3.2 Score=34.74 Aligned_cols=134 Identities=12% Similarity=0.056 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHHHhcc------CCC-ChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHH
Q 025220 81 LFGCLATSTKTILAESLLHS------YKF-DSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSG 153 (256)
Q Consensus 81 l~a~~~~a~~~v~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
..--..+-.+.+++||+..+ ++. ++.-+.+.+.+.+.+..... ....... .....+ |+.....+
T Consensus 20 ~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~--l~~~k~~----~~~~ap---l~~y~~is 90 (327)
T KOG1581|consen 20 SGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAM--LKWWKKE----LSGVAP---LYKYSLIS 90 (327)
T ss_pred HHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHH--Hhccccc----CCCCCc---hhHHhHHH
Confidence 33344566778888888742 122 45556667777665555322 2222111 111122 34444555
Q ss_pred HHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccc
Q 025220 154 VLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
+.......+.+-.+|+.|=-+..+....+.+..++++.++++.+.++...+-..++-.|+..+...++.+
T Consensus 91 ~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 91 FTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 5555555666777899998889999999999999999999999999999999999999999988765543
No 95
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.43 E-value=0.043 Score=44.07 Aligned_cols=130 Identities=14% Similarity=0.156 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHH
Q 025220 76 GFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVL 155 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (256)
.+++++.-++.|+.......|... +|.+-..-..+ ++++.....+++..|.. ....+..-..+|++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~-GALifaiiv~~~~~p~~---------T~~~~iv~~isG~~ 68 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTL-GALIFAIIVFLFVSPEL---------TLTIFIVGFISGAF 68 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhccH-HHHHHHHHHheeecCcc---------chhhHHHHHHhhhH
Confidence 456778888888888777776632 44443333333 34444433333332221 22234556667777
Q ss_pred HHHHHHHHHHHhhccChhHHHHHhh-hhHHHHHHHHHhhccCcccchhh----hhHHHHHHHHHHHHhh
Q 025220 156 AFCLNFSIFYVIHSTTAVTFNVAGN-LKVAVAVLVSWLIFRNPISGMNA----VGCAITLIGCTFYGYI 219 (256)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~s~~~~-l~~v~~~l~~~~l~~e~~s~~~~----~G~~li~~g~~~~~~~ 219 (256)
-...+...+...+..+..++..+.+ .+-+-+.+++++.|||=-++.++ +..++++.|+.+..+.
T Consensus 69 Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~ 137 (288)
T COG4975 69 WSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ 137 (288)
T ss_pred hhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence 7777777888777777666655544 47788999999999997777654 4556667777776543
No 96
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.06 E-value=3.9 Score=34.83 Aligned_cols=145 Identities=15% Similarity=0.152 Sum_probs=78.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHH-HhcCcchhhhhccCCCChhHHHHHHHH
Q 025220 74 MFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPAL-LLEGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 74 ~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
..|+++-.+++++.+.+.+=.||.. .=+++..+...-+-.-+..|... ...-|+..+.....+.. .++...+.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk----~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~--~l~~~~l~ 79 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK----GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPAS--TLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC----CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChh--HHHHHHHH
Confidence 5799999999999999999999873 24445444333333334444333 33455555444444333 23333333
Q ss_pred HHHHHHHHHHHHHHhhccC-hhHHHHHhhhhHHHHHHHHHhhc-------cCcccchhhhhHHHHHHHHHHHHhhhcccc
Q 025220 153 GVLAFCLNFSIFYVIHSTT-AVTFNVAGNLKVAVAVLVSWLIF-------RNPISGMNAVGCAITLIGCTFYGYIRHLLS 224 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~-~~~~s~~~~l~~v~~~l~~~~l~-------~e~~s~~~~~G~~li~~g~~~~~~~~~~~~ 224 (256)
|++--..+...=..+++.+ +...++..-+-.+++.++.-++. +++-....++|.+++++|+.+..+.-..|+
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 3332222221112234433 22344444444445555433332 233345788999999999999987654433
No 97
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=93.02 E-value=0.31 Score=34.58 Aligned_cols=52 Identities=25% Similarity=0.392 Sum_probs=40.2
Q ss_pred HHHhhccChhHHH-HHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHH
Q 025220 164 FYVIHSTTAVTFN-VAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTF 215 (256)
Q Consensus 164 ~~~~~~~~~~~~s-~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~ 215 (256)
++.+++.+-..+. +.+.+.-+++.+.++++..|..+...++|+++++.|+.+
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 3445665544333 446788899999999998888899999999999999764
No 98
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=92.63 E-value=0.062 Score=41.71 Aligned_cols=63 Identities=10% Similarity=0.227 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 158 CLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
..++.....+++.+|+.++.+...+..+..+++++++++++...+++..++.+.|+++..+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 456666677899999999999999999999999999999999999999999999988876543
No 99
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=90.54 E-value=1.6 Score=36.05 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 149 IFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
++..+++-......++..+..+++....++.-...+++-+++..+++.++++.||.|+..+.+|.+....
T Consensus 89 fl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~ 158 (372)
T KOG3912|consen 89 FLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGS 158 (372)
T ss_pred ecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeee
Confidence 3346666666667777788889999999998889999999999999999999999999999999987653
No 100
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=87.45 E-value=0.63 Score=39.40 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=74.2
Q ss_pred HHHHHHHHHhccC-CCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHh
Q 025220 89 TKTILAESLLHSY-KFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVI 167 (256)
Q Consensus 89 ~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (256)
..+++.|+..+++ -.-|..+...+...+....+....+...+... . .....+.-++-.+++...........+
T Consensus 31 ~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~-~-----~~~~~~~~llpl~~~~~~~~v~~n~Sl 104 (316)
T KOG1441|consen 31 GVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSK-I-----SSKLPLRTLLPLGLVFCISHVLGNVSL 104 (316)
T ss_pred eeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc-c-----ccccchHHHHHHHHHHHHHHHhcchhh
Confidence 3445566666532 23455555554444433333333222222111 0 011224445555555555556666778
Q ss_pred hccChhHHHHHhhhhHHHHHHHHHhhccCcccc----------------------hhhhhHHHHHHHHHHHH
Q 025220 168 HSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISG----------------------MNAVGCAITLIGCTFYG 217 (256)
Q Consensus 168 ~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~----------------------~~~~G~~li~~g~~~~~ 217 (256)
++.+...+..+..++|++++++++++.+|+.+. ..+.|....+++.....
T Consensus 105 ~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~a 176 (316)
T KOG1441|consen 105 SYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFA 176 (316)
T ss_pred hccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766 35566666666665544
No 101
>PRK02237 hypothetical protein; Provisional
Probab=84.40 E-value=8.7 Score=26.88 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=41.1
Q ss_pred hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 172 AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 172 ~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
...++-.+-.-.+.++++++.+-+++++...++|..++++|+.+....
T Consensus 59 GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 59 GRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 345667777788999999999999999999999999999999876543
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.10 E-value=0.35 Score=40.54 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=78.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHH
Q 025220 73 NMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 73 ~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
+..|.++++.+++..+...++.||-.++.+. .-..++.+..... . .+.|+.-.+.
T Consensus 19 ~~~G~~LaissS~~Ig~sfilkKkgl~r~~~--------------------~~~ra~~gg~~yl--~---~~~Ww~G~lt 73 (335)
T KOG2922|consen 19 NIIGLVLAISSSIFIGSSFILKKKGLKRAGA--------------------SGLRAGEGGYGYL--K---EPLWWAGMLT 73 (335)
T ss_pred ceeeeeehhhccEEEeeehhhhHHHHHHHhh--------------------hcccccCCCcchh--h---hHHHHHHHHH
Confidence 4578999999999999999999887652110 0011111111111 1 1234554445
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 153 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
-..|-..|+.. ....++.-...++.+..+.+.+++..+++|+++....+|++++++|....-.
T Consensus 74 m~vGei~NFaA---YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ 136 (335)
T KOG2922|consen 74 MIVGEIANFAA---YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVI 136 (335)
T ss_pred HHHHhHhhHHH---HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEE
Confidence 55555555544 3445666677778888899999999999999999999999999999776543
No 103
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.82 E-value=28 Score=29.43 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCChHH-HHHHHhHHHHHHHHHHHHHh--cCcchhhhhccCCCChhHHHHHHHH
Q 025220 76 GFCAALFGCLATSTKTILAESLLHSYKFDSIN-TVYYMAPFATMILSIPALLL--EGSGIMDWLSTHPSPWSAFIIIFSS 152 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
....++.-+++.-+..+..|.....++.+..- ++.+|++.+.+.....-..- +.++.+ + ...+-|+ -.
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~-~-----~~~kk~~---P~ 83 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLD-L-----RTAKKWF---PV 83 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcC-h-----HHHHHHc---cH
Confidence 34555666666667777777777665554433 34588888777665443321 111111 1 0111111 11
Q ss_pred HHHHHHHHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 153 GVLAFCLNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
.++-++..+..-..+++.+.....++..+.++.+.+-...+++..++...+.....+++|...+.
T Consensus 84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhc
Confidence 11111122222344688888889999999999999999999999999999999999999887764
No 104
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.69 E-value=1.2 Score=30.92 Aligned_cols=40 Identities=15% Similarity=0.181 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc
Q 025220 30 FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 69 (256)
Q Consensus 30 ~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 69 (256)
...+.+.+..+.+-++||++.++++..++++|+.++...+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 4566777888889999999999999999999998876543
No 105
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=82.15 E-value=7.8 Score=27.03 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=41.1
Q ss_pred hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 172 AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 172 ~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
.-.++...-.-.+.++++++.+-+++++...++|..+++.|+.+..+.
T Consensus 57 GRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 57 GRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 335667777788999999999999999999999999999999886553
No 106
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=81.92 E-value=2.6 Score=29.14 Aligned_cols=40 Identities=15% Similarity=0.173 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc
Q 025220 30 FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 69 (256)
Q Consensus 30 ~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 69 (256)
...+.+.+..+..-+++|++.++.+..+++.|+.++..++
T Consensus 67 vyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 67 VYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred hHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 3556677788888899999999999999999998887654
No 107
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=81.76 E-value=1.5 Score=36.59 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHHh-c--------CcchhhhhccCCCChhHHHHHHH
Q 025220 81 LFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALLL-E--------GSGIMDWLSTHPSPWSAFIIIFS 151 (256)
Q Consensus 81 l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~ 151 (256)
+++.+|++.+...+|..-++-+. .+..+|-..++.++......+. . ++++. .+..+.++..+...+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~--~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl--~qL~Q~n~~sv~~A~a 77 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL--PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFL--TQLSQANWPSVLFAMA 77 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc--cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHH--HHHhcCChHHHHHHHH
Confidence 34667788888777776553222 2334555555555443333232 1 12222 2223344444544555
Q ss_pred HHHHHHHHHHHHHHHhhccChh-HHHHHhhhhHHHHHHHHHhhccCccc--chhhhhHHHHHHHHHHHH
Q 025220 152 SGVLAFCLNFSIFYVIHSTTAV-TFNVAGNLKVAVAVLVSWLIFRNPIS--GMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~v~~~l~~~~l~~e~~s--~~~~~G~~li~~g~~~~~ 217 (256)
.|++--..|++..+.+...+-. +.-+-..+.-++++.+.+++ +.+.+ ..-..|.+++++++++-.
T Consensus 78 GGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga 145 (336)
T PF07168_consen 78 GGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGA 145 (336)
T ss_pred hhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHH
Confidence 5555555555554443332211 01111111223333333333 34444 245567777777776643
No 108
>PRK02237 hypothetical protein; Provisional
Probab=81.10 E-value=1.5 Score=30.64 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecc
Q 025220 30 FTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTE 69 (256)
Q Consensus 30 ~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~ 69 (256)
...+.+.+..+..-++||++.++++..++++|+.++...+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 3456666888889999999999999999999998775543
No 109
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=80.83 E-value=4.6 Score=29.66 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=19.3
Q ss_pred HHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 183 VAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 183 ~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
-.+-+++|.+.+++ --...++|..+...|++....
T Consensus 71 Glfyif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 71 GLFYIFLGTLCLGQ-SILSIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666555 223445666666777665443
No 110
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=79.56 E-value=0.59 Score=38.41 Aligned_cols=100 Identities=13% Similarity=0.106 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHH--HHHhccccChhhhhhhhhhhhceeEeeecc--cccchhhHHHHHHHHHHHHHHHHHH
Q 025220 19 IPVSFMQTIKSFTPATTVVLQ--WLVWRKYFDWRIWASLVPIVGGILLTSVTE--LSFNMFGFCAALFGCLATSTKTILA 94 (256)
Q Consensus 19 ~~~~~~~ii~~~~pi~~~i~~--~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~--~~~~~~g~~~~l~a~~~~a~~~v~~ 94 (256)
.+-+-.+++.+...+++.++- .+|.|+-+...-.+|++++.+-..+...-. .+.-+.|+++.++.+...-....|.
T Consensus 47 ~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym 126 (381)
T PF05297_consen 47 LTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYM 126 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556665555444433 334455567777777777776666554333 2233456555544443332223332
Q ss_pred HHHhccCCCChHHHHHHHhHHHHHH
Q 025220 95 ESLLHSYKFDSINTVYYMAPFATMI 119 (256)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (256)
. +.++++.+-++++.+...++..+
T Consensus 127 ~-lLr~~GAs~WtiLaFcLAF~Lai 150 (381)
T PF05297_consen 127 W-LLRELGASFWTILAFCLAFLLAI 150 (381)
T ss_dssp -------------------------
T ss_pred H-HHHHhhhHHHHHHHHHHHHHHHH
Confidence 2 44556778888876655544433
No 111
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=76.88 E-value=61 Score=29.76 Aligned_cols=19 Identities=16% Similarity=-0.157 Sum_probs=10.5
Q ss_pred HHHHhhhhHHHHHHHHHhh
Q 025220 175 FNVAGNLKVAVAVLVSWLI 193 (256)
Q Consensus 175 ~s~~~~l~~v~~~l~~~~l 193 (256)
..+.....|+-+.++|.+.
T Consensus 349 ~~~~~g~~~lGsll~G~la 367 (524)
T PF05977_consen 349 QMVFFGGMPLGSLLWGFLA 367 (524)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444666666666554
No 112
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=76.12 E-value=6.8 Score=28.89 Aligned_cols=61 Identities=7% Similarity=0.163 Sum_probs=46.9
Q ss_pred hHHHHHHHhhhhhccccchhHHHHHHHH-HHHHHHHHHHH----HhccccChhhhhhhhhhhhcee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTIKSF-TPATTVVLQWL----VWRKYFDWRIWASLVPIVGGIL 63 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii~~~-~pi~~~i~~~i----~~~~~~~~~~~~~~~l~~~Gv~ 63 (256)
++-+....+..+....++++....+.-. +-+...+++.+ ..|+++++++.+++.+.++|+.
T Consensus 72 ~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 72 LLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4455666777788888888887776654 56666777775 4578999999999999999975
No 113
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=75.99 E-value=3.5 Score=25.98 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHhhhccccCC
Q 025220 201 MNAVGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
.-++++..+++|..+|....+++..+
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~~q 30 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKTTQ 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34678888899999998776654443
No 114
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=74.24 E-value=5.7 Score=30.16 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=6.4
Q ss_pred cccccccccccc
Q 025220 240 NLMELLPLVNDK 251 (256)
Q Consensus 240 ~~~~~~~~~~~~ 251 (256)
++.|..|+.++|
T Consensus 137 ~~~Em~pL~~dd 148 (163)
T PF06679_consen 137 ENVEMAPLEEDD 148 (163)
T ss_pred ccceecccCCCc
Confidence 455666663333
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=73.76 E-value=3.1 Score=29.97 Aligned_cols=10 Identities=20% Similarity=-0.021 Sum_probs=0.0
Q ss_pred cccccccccc
Q 025220 241 LMELLPLVND 250 (256)
Q Consensus 241 ~~~~~~~~~~ 250 (256)
+++..|+...
T Consensus 106 ~d~~~p~~~~ 115 (122)
T PF01102_consen 106 DDTDVPLSSV 115 (122)
T ss_dssp ----------
T ss_pred CCCCCCccee
Confidence 3444555433
No 116
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=71.77 E-value=72 Score=28.23 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=13.7
Q ss_pred cCcccc--hhhhhHHHHHHHHHHHH
Q 025220 195 RNPISG--MNAVGCAITLIGCTFYG 217 (256)
Q Consensus 195 ~e~~s~--~~~~G~~li~~g~~~~~ 217 (256)
+++-+. ...++.++.++.+..|.
T Consensus 177 ~~~~sA~~yF~~s~~~~llC~i~y~ 201 (406)
T KOG1479|consen 177 DSRTSALIYFITSTVILLLCFVLYL 201 (406)
T ss_pred CCCceeehhHHHHHHHHHHHHHHHH
Confidence 444433 34456666677777776
No 117
>PHA03049 IMV membrane protein; Provisional
Probab=70.61 E-value=8.3 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhccccCC
Q 025220 201 MNAVGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
.-++++..+++|..+|...+++...+
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~~~q 30 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKTTTS 30 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccC
Confidence 34677788889999998776654443
No 118
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=68.45 E-value=6.3 Score=27.42 Aligned_cols=29 Identities=14% Similarity=0.022 Sum_probs=24.7
Q ss_pred HHHHHhhccCcccchhhhhHHHHHHHHHH
Q 025220 187 VLVSWLIFRNPISGMNAVGCAITLIGCTF 215 (256)
Q Consensus 187 ~l~~~~l~~e~~s~~~~~G~~li~~g~~~ 215 (256)
..++++.++|++++.++.|.++++.++..
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 35678899999999999999999887654
No 119
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=64.50 E-value=68 Score=25.22 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMILSIPALL 126 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (256)
....+.+.+-++.|...+...-- =+...+++-|.+-+..++++..++.
T Consensus 30 ~s~l~Li~~f~~vA~l~~ll~a~----Fla~~qIiVYvGAI~VLflFvIMll 77 (198)
T PRK06638 30 HSALFLILTFLSIAGLYFLLGAE----FLGVVQIIVYVGAVMVLFLFVVMML 77 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444455555555555544432 2356677778777776666655554
No 120
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=64.32 E-value=14 Score=25.68 Aligned_cols=59 Identities=8% Similarity=0.245 Sum_probs=37.6
Q ss_pred HHHHhhhhhccccchhHHHHHHHH-HHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 7 INIVLGNVSLRYIPVSFMQTIKSF-TPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 7 ~~~~~~~~al~~~~~~~~~ii~~~-~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
.+...+-.+.+..+.+.--+++=. +...-+.++.+++||++++....|.++.++++.++
T Consensus 47 l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 47 LQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred HhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 333333445555555554444432 22233456788999999999999999988887654
No 121
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=63.50 E-value=11 Score=22.88 Aligned_cols=14 Identities=7% Similarity=0.171 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhh
Q 025220 206 CAITLIGCTFYGYI 219 (256)
Q Consensus 206 ~~li~~g~~~~~~~ 219 (256)
++++++|+++-+..
T Consensus 8 IIviVlgvIigNia 21 (55)
T PF11446_consen 8 IIVIVLGVIIGNIA 21 (55)
T ss_pred HHHHHHHHHHhHHH
Confidence 45555666655543
No 122
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=62.52 E-value=29 Score=25.71 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=21.0
Q ss_pred hhccChhHHHHHhhhhHHHHHHHHHhhc
Q 025220 167 IHSTTAVTFNVAGNLKVAVAVLVSWLIF 194 (256)
Q Consensus 167 ~~~~~~~~~s~~~~l~~v~~~l~~~~l~ 194 (256)
+..-+....+.+.|+-|.++++++.+++
T Consensus 69 i~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 69 IEEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777888888888888888777664
No 123
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=61.64 E-value=2.1 Score=34.89 Aligned_cols=59 Identities=14% Similarity=0.321 Sum_probs=49.2
Q ss_pred HHHHHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 159 LNFSIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
.|+....+.++++-+..+++..-..+...+++|++++.+..+.++.|.++++.|+.+.-
T Consensus 91 aNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV 149 (336)
T KOG2766|consen 91 ANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVV 149 (336)
T ss_pred ccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEE
Confidence 34333345677888888888888899999999999999999999999999999988754
No 124
>PF15102 TMEM154: TMEM154 protein family
Probab=60.49 E-value=8.3 Score=28.56 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHhhhccccCC
Q 025220 204 VGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 204 ~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
++.++++..++++.+.||++.++
T Consensus 67 LLvlLLl~vV~lv~~~kRkr~K~ 89 (146)
T PF15102_consen 67 LLVLLLLSVVCLVIYYKRKRTKQ 89 (146)
T ss_pred HHHHHHHHHHHheeEEeecccCC
Confidence 33444555566665555544443
No 125
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=6 Score=32.73 Aligned_cols=53 Identities=13% Similarity=0.285 Sum_probs=45.3
Q ss_pred HHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHH
Q 025220 163 IFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTF 215 (256)
Q Consensus 163 ~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~ 215 (256)
..++++..+...+-+-..+..++++++++.+++++-+..-..++.+++.|..+
T Consensus 119 nnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l 171 (347)
T KOG1442|consen 119 NNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL 171 (347)
T ss_pred cceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee
Confidence 34567888887777778888999999999999999999999999999888765
No 126
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=59.00 E-value=1.2e+02 Score=27.01 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHHH
Q 025220 201 MNAVGCAITLIGCT 214 (256)
Q Consensus 201 ~~~~G~~li~~g~~ 214 (256)
..+.+.++.+++.+
T Consensus 402 ~f~~~~~~~li~~~ 415 (455)
T TIGR00892 402 IFYASGSIVVSAGL 415 (455)
T ss_pred HHHHhhHHHHHHHH
Confidence 33444444444443
No 127
>PRK02463 OxaA-like protein precursor; Provisional
Probab=55.77 E-value=87 Score=26.57 Aligned_cols=39 Identities=13% Similarity=0.010 Sum_probs=21.7
Q ss_pred HhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 178 AGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 178 ~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
.++.-|+..+++++.+ .-.+.....++.++.++=-++.+
T Consensus 210 m~~~~Pim~~~~~~~~-PagL~lYW~~snlfsi~Q~~i~~ 248 (307)
T PRK02463 210 MMYMMPIMMVVFSFSS-PAGVGLYWLVGGFFSIIQQLITT 248 (307)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555332 23445556666666666655555
No 128
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=55.64 E-value=30 Score=24.03 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=38.0
Q ss_pred HHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 174 TFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 174 ~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
.++-.+-.-.+.++++.+.+=+..++...+.|..++++|..+....
T Consensus 60 vYAAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 60 VYAAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 4555666678889999999999999999999999999997765543
No 129
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=54.06 E-value=1.4e+02 Score=25.65 Aligned_cols=208 Identities=14% Similarity=0.171 Sum_probs=108.8
Q ss_pred HhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhc-------cccChhhhhhhhhhhhceeEeeec----c-------c
Q 025220 10 VLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWR-------KYFDWRIWASLVPIVGGILLTSVT----E-------L 70 (256)
Q Consensus 10 ~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~-------~~~~~~~~~~~~l~~~Gv~~~~~~----~-------~ 70 (256)
...-.+++|+.++.-+-+ ..+.-.+-.++-.++.+ ++-....+++++++++|+++.... | .
T Consensus 88 ltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~~~~~ 167 (344)
T PF06379_consen 88 LTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELGEEAK 167 (344)
T ss_pred hhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhccchh
Confidence 344467788877765433 33444444444444433 233457789999999999987531 1 1
Q ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHh------ccCCCChHHHH---HHHhHHHHH-HHHHHHHHh--cCcchh---h
Q 025220 71 SFN-MFGFCAALFGCLATSTKTILAESLL------HSYKFDSINTV---YYMAPFATM-ILSIPALLL--EGSGIM---D 134 (256)
Q Consensus 71 ~~~-~~g~~~~l~a~~~~a~~~v~~~~~~------~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~--~~~~~~---~ 134 (256)
+.+ ..|.+.++++.+..|..+.-.+.-. .+.+.+|+... ......+.. .-+...+.. ...+.+ +
T Consensus 168 efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s~~~d 247 (344)
T PF06379_consen 168 EFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWSWKGD 247 (344)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCccccc
Confidence 122 3699999999999999988776432 11233443221 111111222 222222221 111111 1
Q ss_pred hhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh----ccChhHHHHHhhhhHHHHHHHHHhhccC------cccchhhh
Q 025220 135 WLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIH----STTAVTFNVAGNLKVAVAVLVSWLIFRN------PISGMNAV 204 (256)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~l~~v~~~l~~~~l~~e------~~s~~~~~ 204 (256)
+-...+....-.+.-++.|+.-+...+..-+.-. +.+...-.+.+.+..+++-+++..+ +| +.-..-+.
T Consensus 248 ~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l-kEWKg~s~kt~~vl~~ 326 (344)
T PF06379_consen 248 YSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL-KEWKGASKKTIRVLVL 326 (344)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCcccHHHHHH
Confidence 1101111112233344444444433222212222 2346677888888999999999665 44 22234578
Q ss_pred hHHHHHHHHHHHHh
Q 025220 205 GCAITLIGCTFYGY 218 (256)
Q Consensus 205 G~~li~~g~~~~~~ 218 (256)
|+++++.++.+..+
T Consensus 327 G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 327 GIAVLILSVVIVGY 340 (344)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888777544
No 130
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.40 E-value=20 Score=24.65 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=30.5
Q ss_pred HHHhhhhHHHH----HHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 176 NVAGNLKVAVA----VLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 176 s~~~~l~~v~~----~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
+-+..++.+++ +.+|++.++|++.+.++.|..++..|+...
T Consensus 69 ~QLK~mQEVItL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 69 AQLKTMQEVITLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 33444444444 356888899999999999999998887764
No 131
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=53.09 E-value=1.8e+02 Score=26.36 Aligned_cols=24 Identities=4% Similarity=-0.111 Sum_probs=19.5
Q ss_pred ccchhhhhHHHHHHHHHHHHhhhc
Q 025220 198 ISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 198 ~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
++..|++.+.++++|++++.+.++
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~~ 277 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAPK 277 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhc
Confidence 788999999999999887755443
No 132
>PRK14397 membrane protein; Provisional
Probab=51.82 E-value=1.3e+02 Score=24.29 Aligned_cols=11 Identities=0% Similarity=0.265 Sum_probs=5.4
Q ss_pred HHHHHHHHhhh
Q 025220 210 LIGCTFYGYIR 220 (256)
Q Consensus 210 ~~g~~~~~~~~ 220 (256)
+...++|.+++
T Consensus 168 ~a~lvi~rHr~ 178 (222)
T PRK14397 168 VMALVYWSHRE 178 (222)
T ss_pred HHHHHHHHHHH
Confidence 34455565543
No 133
>PF15471 TMEM171: Transmembrane protein family 171
Probab=50.76 E-value=17 Score=29.90 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.7
Q ss_pred chhhhhHHHHHHHHHHHHhh
Q 025220 200 GMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 200 ~~~~~G~~li~~g~~~~~~~ 219 (256)
..|++|-.+++.|.+.+-.+
T Consensus 161 slQImGPlIVl~GLCFFVVA 180 (319)
T PF15471_consen 161 SLQIMGPLIVLVGLCFFVVA 180 (319)
T ss_pred ehhhhhhHHHHHhhhhhhee
Confidence 46899999999999987654
No 134
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=50.40 E-value=76 Score=25.89 Aligned_cols=45 Identities=24% Similarity=0.129 Sum_probs=25.7
Q ss_pred hHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHH
Q 025220 173 VTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 173 ~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~ 217 (256)
...+....+....=.+.|.++.+.-+-....+|..+.+.-..+|-
T Consensus 161 f~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~ 205 (243)
T KOG1623|consen 161 FPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYF 205 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhh
Confidence 334444443333333445555333334566789999888888883
No 135
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.76 E-value=93 Score=21.89 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhcc-CcccchhhhhHHHHHHHHHHHHhhhc
Q 025220 183 VAVAVLVSWLIFR-NPISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 183 ~v~~~l~~~~l~~-e~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
.++++.++|++=+ -.-+|+.++...++=.|.-..+..|+
T Consensus 56 ilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 56 ILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666665522 23456666666665444444444443
No 136
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=47.59 E-value=2.2e+02 Score=25.93 Aligned_cols=16 Identities=6% Similarity=0.046 Sum_probs=9.0
Q ss_pred ChHHHHHHHhHHHHHH
Q 025220 104 DSINTVYYMAPFATMI 119 (256)
Q Consensus 104 ~~~~~~~~~~~~~~~~ 119 (256)
.|...+..+..++.++
T Consensus 330 ~P~~a~~~~~~i~~l~ 345 (507)
T TIGR00910 330 VPVPLVIIQGIITSIA 345 (507)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4565666666655443
No 137
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=47.58 E-value=17 Score=29.27 Aligned_cols=55 Identities=4% Similarity=-0.080 Sum_probs=38.8
Q ss_pred HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhh
Q 025220 6 CINIVLGNVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVG 60 (256)
Q Consensus 6 ~~~~~~~~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~ 60 (256)
.+...++-|+++-++..++.++..+.-...++.+.+++.+..++....++++.+.
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 3344555677788888888888888877777777777777777766666555443
No 138
>PRK15432 autoinducer 2 ABC transporter permease LsrC; Provisional
Probab=46.03 E-value=62 Score=27.93 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=13.6
Q ss_pred chhhhhHHHHHHHHHHHHhhhc
Q 025220 200 GMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 200 ~~~~~G~~li~~g~~~~~~~~~ 221 (256)
+.+++..+++++.+.+..+.++
T Consensus 288 ~~~ii~g~lll~vl~~~~~~~~ 309 (344)
T PRK15432 288 WNDFIAGLVLLGVLVFDGRLRC 309 (344)
T ss_pred HHHHHHHHHhhhhhhHHHHHHH
Confidence 4567777777766666554433
No 139
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=45.95 E-value=45 Score=24.24 Aligned_cols=26 Identities=8% Similarity=-0.004 Sum_probs=18.3
Q ss_pred ccChhHHHHHhhhhHHHHHHHHHhhc
Q 025220 169 STTAVTFNVAGNLKVAVAVLVSWLIF 194 (256)
Q Consensus 169 ~~~~~~~s~~~~l~~v~~~l~~~~l~ 194 (256)
..+....+.+.|+-|++.++.+.++.
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888888887776664
No 140
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=45.73 E-value=60 Score=25.70 Aligned_cols=47 Identities=11% Similarity=0.104 Sum_probs=27.3
Q ss_pred ChhHHHHHhhhhHHHHHHHHHhhccCccc-chhhh-hHHHHHHHHHHHH
Q 025220 171 TAVTFNVAGNLKVAVAVLVSWLIFRNPIS-GMNAV-GCAITLIGCTFYG 217 (256)
Q Consensus 171 ~~~~~s~~~~l~~v~~~l~~~~l~~e~~s-~~~~~-G~~li~~g~~~~~ 217 (256)
.+...+.+..+-|..+..++..+-+--.. ..+++ +.+++++|..+..
T Consensus 32 ~~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 32 SNLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 44556666666777777777666543222 23444 4555666766543
No 141
>PLN02776 prenyltransferase
Probab=44.14 E-value=2.1e+02 Score=24.71 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=11.8
Q ss_pred HHHHhccccChhhhhhhhhh
Q 025220 39 QWLVWRKYFDWRIWASLVPI 58 (256)
Q Consensus 39 ~~i~~~~~~~~~~~~~~~l~ 58 (256)
-+-.+|++-.+..++|.+..
T Consensus 115 vYt~lKR~t~~~~~lG~~~G 134 (341)
T PLN02776 115 VYTPLKQIHPANTWVGAVVG 134 (341)
T ss_pred HHHhHccCCchhHHHHHHHH
Confidence 33346776666666666555
No 142
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=42.86 E-value=26 Score=26.55 Aligned_cols=12 Identities=0% Similarity=-0.177 Sum_probs=5.1
Q ss_pred ccccChhhhhhh
Q 025220 44 RKYFDWRIWASL 55 (256)
Q Consensus 44 ~~~~~~~~~~~~ 55 (256)
|..|+..+.+|+
T Consensus 94 KtsP~LYr~LGI 105 (193)
T COG4657 94 KTSPTLYRLLGI 105 (193)
T ss_pred ccCHHHHHHHHH
Confidence 334444444444
No 143
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=42.09 E-value=2.6e+02 Score=25.06 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=7.0
Q ss_pred hhhHHHHHHHHHHH
Q 025220 203 AVGCAITLIGCTFY 216 (256)
Q Consensus 203 ~~G~~li~~g~~~~ 216 (256)
..+.+++++.+..|
T Consensus 179 ~~a~~v~l~~i~~~ 192 (437)
T TIGR00939 179 GTPCVVQLICIVCY 192 (437)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 144
>PF15345 TMEM51: Transmembrane protein 51
Probab=42.04 E-value=35 Score=27.43 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHhhhccccCC
Q 025220 204 VGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 204 ~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
.|.++.++.+++--+.|+++++.
T Consensus 67 ~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 67 SGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 46777778888776655554443
No 145
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=41.04 E-value=57 Score=22.81 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=37.5
Q ss_pred HHHhhccChh-HHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 164 FYVIHSTTAV-TFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 164 ~~~~~~~~~~-~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
|+.+++.+-+ ..-+.+.+.-.++.++|..+.-|......+.|..+++.|+.+.
T Consensus 70 ~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 70 YLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 3334544332 2334455667888999988877788889999999999998763
No 146
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=39.86 E-value=72 Score=23.98 Aligned_cols=24 Identities=4% Similarity=0.022 Sum_probs=14.3
Q ss_pred cChhHHHHHhhhhHHHHHHHHHhh
Q 025220 170 TTAVTFNVAGNLKVAVAVLVSWLI 193 (256)
Q Consensus 170 ~~~~~~s~~~~l~~v~~~l~~~~l 193 (256)
.+..+.+.+.|+-|.+.++.+..+
T Consensus 72 ~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 72 GSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666676666665444
No 147
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=39.16 E-value=35 Score=22.78 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=21.0
Q ss_pred cccchhhhhHHHHHHHHHHHHhhhc
Q 025220 197 PISGMNAVGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 197 ~~s~~~~~G~~li~~g~~~~~~~~~ 221 (256)
.+++..++|.++++.|..+|..++.
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~ 28 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFF 28 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999976443
No 148
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=38.90 E-value=24 Score=29.34 Aligned_cols=50 Identities=8% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhccccCC
Q 025220 177 VAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 177 ~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
++..-.++..++.++++.+.+.+..|+....++-+|+.+.+..+.++.+.
T Consensus 96 IfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 96 IFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred EEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 33344567889999999999999999999999999999998876655443
No 149
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=38.50 E-value=1.1e+02 Score=21.36 Aligned_cols=23 Identities=13% Similarity=0.041 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q 025220 201 MNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
..++.++.+++++++|..+.++.
T Consensus 55 ~~~~~~~w~~~A~~ly~~RP~s~ 77 (103)
T PF11027_consen 55 MFMMMMLWMVLAMALYLLRPSSL 77 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCchhh
Confidence 35556667777788887655433
No 150
>COG1971 Predicted membrane protein [Function unknown]
Probab=37.90 E-value=65 Score=25.17 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=27.3
Q ss_pred hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHH-HHHHHHHH
Q 025220 172 AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAI-TLIGCTFY 216 (256)
Q Consensus 172 ~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~l-i~~g~~~~ 216 (256)
+...+......|.++...+.++=+-.-.+.+|+|.++ .++|+.+.
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~~lG~~mI 85 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLIILGLKMI 85 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777666544456667666554 45665553
No 151
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.13 E-value=33 Score=23.57 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=24.8
Q ss_pred HHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 36 VVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 36 ~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
..++.+.+||.+++..+.+..++.+|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 356888899999999999998888887653
No 152
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=34.43 E-value=21 Score=24.02 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=12.9
Q ss_pred cchhhhhHHHHHHHHHHHH
Q 025220 199 SGMNAVGCAITLIGCTFYG 217 (256)
Q Consensus 199 s~~~~~G~~li~~g~~~~~ 217 (256)
+...++|..+.++|..++-
T Consensus 3 N~~Fl~~l~lliig~~~~v 21 (92)
T PF13038_consen 3 NILFLVGLILLIIGGFLFV 21 (92)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445677778877777664
No 153
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.21 E-value=29 Score=21.57 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHhhhcccc
Q 025220 204 VGCAITLIGCTFYGYIRHLLS 224 (256)
Q Consensus 204 ~G~~li~~g~~~~~~~~~~~~ 224 (256)
+-+.++++|++++.+++.++.
T Consensus 16 ~~~~l~fiavi~~ayr~~~K~ 36 (60)
T COG4736 16 IAFTLFFIAVIYFAYRPGKKG 36 (60)
T ss_pred HHHHHHHHHHHHHHhcccchh
Confidence 445677788888777655443
No 154
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=33.90 E-value=63 Score=28.85 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=16.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhhh
Q 025220 198 ISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 198 ~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
-+...++|.++.+..+.....+.
T Consensus 283 ~~~~~iig~i~~~~~v~yss~ra 305 (429)
T PF03348_consen 283 NTWQSIIGLIFTFVSVLYSSFRA 305 (429)
T ss_pred chHHHHHHHHHHHHHHHHhcccc
Confidence 34556899999888887776544
No 155
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.41 E-value=47 Score=27.53 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=18.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhhh
Q 025220 198 ISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 198 ~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
+|..|+++..+++.|+.+..+.+
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999987764433
No 156
>PHA02644 hypothetical protein; Provisional
Probab=32.90 E-value=48 Score=21.81 Aligned_cols=9 Identities=33% Similarity=0.021 Sum_probs=3.8
Q ss_pred ccccccccc
Q 025220 240 NLMELLPLV 248 (256)
Q Consensus 240 ~~~~~~~~~ 248 (256)
..++..|+-
T Consensus 85 nedekkpek 93 (112)
T PHA02644 85 NEDEKKPEK 93 (112)
T ss_pred cccccCCCC
Confidence 334444443
No 157
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=31.14 E-value=3.9e+02 Score=23.91 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=7.9
Q ss_pred HHHHHhhhhHHHHHHHHHh
Q 025220 174 TFNVAGNLKVAVAVLVSWL 192 (256)
Q Consensus 174 ~~s~~~~l~~v~~~l~~~~ 192 (256)
..++.+....+-..+.+++
T Consensus 384 ~~g~~~~~g~lg~~i~~~l 402 (476)
T PLN00028 384 ISGLTGAGGNVGAVLTQLL 402 (476)
T ss_pred hhhhhhccccHHHHHHHHH
Confidence 3444444333444444443
No 158
>PRK15120 lipopolysaccharide ABC transporter permease LptF; Provisional
Probab=30.03 E-value=3e+02 Score=23.74 Aligned_cols=68 Identities=10% Similarity=-0.005 Sum_probs=40.6
Q ss_pred hhhhhhhhhceeEeeecccccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHHHHHH
Q 025220 52 WASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPFATMI 119 (256)
Q Consensus 52 ~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (256)
+.+++++++|+-+.....-+....+...+++-.+.|=.-....+.......++|+...+.-++....+
T Consensus 274 l~~l~l~llavpl~~~~~R~g~~~~i~~~i~~~~~y~~l~~~~~~l~~~g~lpp~la~Wlp~i~~~~~ 341 (366)
T PRK15120 274 FSVFIMALMVVPLSVVNPRQGRVLSMLPAMLLYLIFFLLQTSLRSNGGKGKLDPMIWMWAVNLIYLAL 341 (366)
T ss_pred HHHHHHHHHHhhhcccCCccccchhHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHH
Confidence 34556666677665443333334466666666665555555666666666788887777666654433
No 159
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=29.76 E-value=52 Score=28.60 Aligned_cols=49 Identities=14% Similarity=0.035 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHHHhhhccccCCCC-----CCCCCCCCCCCcccccccccccc
Q 025220 203 AVGCAITLIGCTFYGYIRHLLSQQPP-----PGTPRTPRTPRNLMELLPLVNDK 251 (256)
Q Consensus 203 ~~G~~li~~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 251 (256)
.+++++++++..|+-...+++..++. ......+.+++.+...-|++++.
T Consensus 306 ~~vli~vl~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (361)
T PF12259_consen 306 AIVLIIVLISLAWLYRTFRRRQLRSAQNPVNVVDGLQDSKNETQTCNLPLLEKQ 359 (361)
T ss_pred HHHHHHHHHHHHhheeehHHHHhhhccCCccccccccccccccccCCCcccccC
Confidence 34555555566665433222222111 12233344455555566666553
No 160
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=29.60 E-value=4e+02 Score=23.60 Aligned_cols=41 Identities=7% Similarity=-0.013 Sum_probs=19.4
Q ss_pred hhHHHHHHHHHhhccCcccc-hhhhhHHHHHHHHHHHHhhhcc
Q 025220 181 LKVAVAVLVSWLIFRNPISG-MNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 181 l~~v~~~l~~~~l~~e~~s~-~~~~G~~li~~g~~~~~~~~~~ 222 (256)
.-++++++...++.-. .++ .-..+......|...|...+++
T Consensus 389 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~ 430 (445)
T PRK10644 389 AVTLIAFVYCIWAVVG-SGAKEVMWSFVTLMVITAFYALNYNR 430 (445)
T ss_pred HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555444321 122 2334444556666666554443
No 161
>PRK14778 lipoprotein signal peptidase; Provisional
Probab=29.05 E-value=72 Score=24.88 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 025220 149 IFSSGVLAFC 158 (256)
Q Consensus 149 ~~~~~~~~~~ 158 (256)
+++.|.++-+
T Consensus 85 LIlGGAlGNl 94 (186)
T PRK14778 85 FILGGALGNL 94 (186)
T ss_pred HHHHHHHhhH
Confidence 3333333333
No 162
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=28.76 E-value=14 Score=21.11 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=6.0
Q ss_pred HHHHHHHHhhh
Q 025220 210 LIGCTFYGYIR 220 (256)
Q Consensus 210 ~~g~~~~~~~~ 220 (256)
.+|...|+.-+
T Consensus 20 ~iGl~IyQkik 30 (49)
T PF11044_consen 20 WIGLSIYQKIK 30 (49)
T ss_pred HHHHHHHHHHH
Confidence 35556666544
No 163
>PF14851 FAM176: FAM176 family
Probab=28.70 E-value=1e+02 Score=23.23 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=3.1
Q ss_pred hhHHHHH
Q 025220 172 AVTFNVA 178 (256)
Q Consensus 172 ~~~~s~~ 178 (256)
|-+++++
T Consensus 19 PE~~aLY 25 (153)
T PF14851_consen 19 PERFALY 25 (153)
T ss_pred hHHHHHH
Confidence 4444443
No 164
>PTZ00207 hypothetical protein; Provisional
Probab=28.34 E-value=4.8e+02 Score=24.52 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=22.3
Q ss_pred ccChhHHHHHhhhhHHHHHHHHHhhccC
Q 025220 169 STTAVTFNVAGNLKVAVAVLVSWLIFRN 196 (256)
Q Consensus 169 ~~~~~~~s~~~~l~~v~~~l~~~~l~~e 196 (256)
+.-...++....-.|+-+.+++..++||
T Consensus 483 k~~g~~yN~~~~a~pigs~~~n~~l~G~ 510 (591)
T PTZ00207 483 KDPAKHYNFCFLGSVLSAIFLNRLLYGE 510 (591)
T ss_pred cchHHHhhHHhHHHHHHHHHHHHHHHHH
Confidence 4456678888888999999998888764
No 165
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=27.77 E-value=30 Score=27.50 Aligned_cols=19 Identities=5% Similarity=-0.013 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHhh
Q 025220 201 MNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~ 219 (256)
-+-.|+...-.++...+++
T Consensus 201 A~~lgmteSqvkVWFQNRR 219 (288)
T KOG0847|consen 201 AQELNMTESQVKVWFQNRR 219 (288)
T ss_pred hccccccHHHHHHHHhcch
Confidence 3445667777777666654
No 166
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=27.36 E-value=1.2e+02 Score=21.96 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=9.6
Q ss_pred Ccccchhh----hhHHHHHHHHHHHH
Q 025220 196 NPISGMNA----VGCAITLIGCTFYG 217 (256)
Q Consensus 196 e~~s~~~~----~G~~li~~g~~~~~ 217 (256)
|..++..+ ..++..++|+++..
T Consensus 30 ED~tpWNysiL~Ls~vvlvi~~~LLg 55 (125)
T PF15048_consen 30 EDATPWNYSILALSFVVLVISFFLLG 55 (125)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55555433 22333345555443
No 167
>KOG0847 consensus Transcription factor, contains HOX domain [Transcription]
Probab=27.21 E-value=58 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=9.8
Q ss_pred CCCccccccccccccccCC
Q 025220 237 TPRNLMELLPLVNDKLDDK 255 (256)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (256)
.++++.-..|+..+.+|+|
T Consensus 251 eeeDDeYNkPLDPnSDDEK 269 (288)
T KOG0847|consen 251 EEEDDEYNKPLDPNSDDEK 269 (288)
T ss_pred cccccccCCCCCCCcchHH
Confidence 3344444556655555554
No 168
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=26.79 E-value=21 Score=29.43 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhhcc
Q 025220 202 NAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 202 ~~~G~~li~~g~~~~~~~~~~ 222 (256)
.++...+.+.|.++|.++++.
T Consensus 234 SiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 234 SIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ---------------------
T ss_pred chhhhhhhccceeeecccccc
Confidence 445567777888888765543
No 169
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=26.62 E-value=4.7e+02 Score=23.43 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=16.5
Q ss_pred hhhhhHHHHHHHHHHHHhhhcc
Q 025220 201 MNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~~~ 222 (256)
....|.++..+|..+|.+.+++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~ 438 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKE 438 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888889998888875553
No 170
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=26.60 E-value=4.8e+02 Score=23.50 Aligned_cols=22 Identities=5% Similarity=-0.029 Sum_probs=13.4
Q ss_pred hhccCcccchhhhhHHHHHHHH
Q 025220 192 LIFRNPISGMNAVGCAITLIGC 213 (256)
Q Consensus 192 ~l~~e~~s~~~~~G~~li~~g~ 213 (256)
-.+|..++..-+.|..+.+.+.
T Consensus 165 ~~lg~dlG~~il~Gl~vaip~~ 186 (441)
T PF02447_consen 165 GALGADLGLVILYGLIVAIPAM 186 (441)
T ss_pred HHhCCChhHHHHHhHHHHHHHH
Confidence 3446667776666766655544
No 171
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.42 E-value=1.5e+02 Score=17.64 Aligned_cols=13 Identities=15% Similarity=0.457 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhh
Q 025220 208 ITLIGCTFYGYIR 220 (256)
Q Consensus 208 li~~g~~~~~~~~ 220 (256)
+.++|+.+.+..|
T Consensus 13 ~~lLg~~I~~~~K 25 (50)
T PF12606_consen 13 MGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHhh
Confidence 3455555555444
No 172
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=25.99 E-value=3.1e+02 Score=23.29 Aligned_cols=63 Identities=11% Similarity=-0.040 Sum_probs=30.2
Q ss_pred hhhhhhhhceeEeeecccccchhhHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhHH
Q 025220 53 ASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHSYKFDSINTVYYMAPF 115 (256)
Q Consensus 53 ~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~ 115 (256)
.+++++++|+.+......+....+...+++..+.|=......+...++..++|....+.-.+.
T Consensus 281 ~~l~~~lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~l~p~~a~w~p~ii 343 (354)
T PF03739_consen 281 SCLILVLLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGENGNLPPFIAAWLPNII 343 (354)
T ss_pred HHHHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 344444455444433332233334555555555555555555555554456666555444443
No 173
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=24.39 E-value=49 Score=18.67 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHhhhc
Q 025220 204 VGCAITLIGCTFYGYIRH 221 (256)
Q Consensus 204 ~G~~li~~g~~~~~~~~~ 221 (256)
+|.++++++..++.++|+
T Consensus 21 V~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 21 VGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred hHHHHHHHHHHhheEEec
Confidence 455566666666644333
No 174
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.38 E-value=3.5e+02 Score=21.22 Aligned_cols=22 Identities=14% Similarity=0.258 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 025220 76 GFCAALFGCLATSTKTILAESL 97 (256)
Q Consensus 76 g~~~~l~a~~~~a~~~v~~~~~ 97 (256)
+....++++++++++..+-||.
T Consensus 180 ~~~~iiig~i~~~~~~~lkkk~ 201 (206)
T PF06570_consen 180 PWVYIIIGVIAFALRFYLKKKY 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666665555544
No 175
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=23.91 E-value=1.2e+02 Score=25.46 Aligned_cols=17 Identities=24% Similarity=0.172 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhhhccc
Q 025220 207 AITLIGCTFYGYIRHLL 223 (256)
Q Consensus 207 ~li~~g~~~~~~~~~~~ 223 (256)
+++++|+++....|+++
T Consensus 243 ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 243 LLVLIGIILAYIRRRRQ 259 (281)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 45566777766555543
No 176
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=23.50 E-value=5.3e+02 Score=22.92 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=27.5
Q ss_pred HHHHHHH--HHHHHHhccccChhhhhhhhhhhhceeEeeec
Q 025220 30 FTPATTV--VLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 68 (256)
Q Consensus 30 ~~pi~~~--i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 68 (256)
..|-+.. +.-++++|-++..|.+.+.++...|..+++..
T Consensus 69 i~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~ 109 (402)
T PF02487_consen 69 ILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS 109 (402)
T ss_pred HHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec
Confidence 3444443 34444556677899999999999999988764
No 177
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=23.23 E-value=90 Score=25.86 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=18.6
Q ss_pred ccchhhhhHHHHHHHHHHHHhh
Q 025220 198 ISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 198 ~s~~~~~G~~li~~g~~~~~~~ 219 (256)
+|..|+++..+++.|+.+.-+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999998876544
No 178
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=22.94 E-value=3.8e+02 Score=22.91 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=39.8
Q ss_pred HHHHHhhccChhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 162 SIFYVIHSTTAVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
...+..+.+.-.-+.+.....+++..++|.++-=|++++.-..-..++..|+.++.+
T Consensus 100 LSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~ 156 (349)
T KOG1443|consen 100 LSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTY 156 (349)
T ss_pred cccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEe
Confidence 344556666666677777777888888888877788877766666666666665544
No 179
>PF11045 YbjM: Putative inner membrane protein of Enterobacteriaceae; InterPro: IPR020368 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=22.59 E-value=3.1e+02 Score=19.88 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=45.5
Q ss_pred HHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHhhh-hHHHHHHH
Q 025220 111 YMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFNVAGNL-KVAVAVLV 189 (256)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l-~~v~~~l~ 189 (256)
|.+.+++.++....+..-..+..+.......+....+.+++.|..+... ++-+.......+.+ ..++-.++
T Consensus 7 W~g~i~cfvLf~vVfl~~~~~~~g~~~~~~~~e~GLLlFlLPG~vas~l--------S~~~rv~~pL~GAllAap~clLl 78 (125)
T PF11045_consen 7 WAGVICCFVLFIVVFLFLKFHVKGAFRASGHPELGLLLFLLPGAVASFL--------SRRRRVLSPLLGALLAAPVCLLL 78 (125)
T ss_pred chHHHHHHHHHHHHHHHhhcccccccCCCCCCCchhHHHHhhHHHHHHH--------cCCcchHHHHHHHHHHHHHHHHH
Confidence 4445555555444444333333222222233333466677777765543 33444444444443 33445555
Q ss_pred HHhhccCcccchhhhhHHH
Q 025220 190 SWLIFRNPISGMNAVGCAI 208 (256)
Q Consensus 190 ~~~l~~e~~s~~~~~G~~l 208 (256)
-.+.+.+.-|..|-+...+
T Consensus 79 ~~~~~~~~rs~wQelAw~~ 97 (125)
T PF11045_consen 79 MHLWFAPSRSFWQELAWLF 97 (125)
T ss_pred HHHHHcccchHHHHHHHHH
Confidence 6677778888887555444
No 180
>KOG2822 consensus Sphingoid base-phosphate phosphatase [Lipid transport and metabolism]
Probab=22.54 E-value=1.9e+02 Score=25.24 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=12.7
Q ss_pred HHHhhhhHHHHHHHHHhhccC
Q 025220 176 NVAGNLKVAVAVLVSWLIFRN 196 (256)
Q Consensus 176 s~~~~l~~v~~~l~~~~l~~e 196 (256)
.+..++.|+..-+..+.+++.
T Consensus 310 ~~~~~l~rvlvgl~~i~i~K~ 330 (407)
T KOG2822|consen 310 PLSLFLPRVLVGLPTILIWKF 330 (407)
T ss_pred cHhhhcccceehhhhHHHHHH
Confidence 455556566666666666654
No 181
>COG3366 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.47 E-value=1.7e+02 Score=24.83 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=25.1
Q ss_pred hhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHh
Q 025220 179 GNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 179 ~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~ 218 (256)
...-|+...++|+.....-......++..-.++|. ++..
T Consensus 106 ~f~~Pv~lpiLG~~~GliYv~i~~~va~~~tlig~-l~g~ 144 (311)
T COG3366 106 TFYAPVALPILGLELGLIYVGIRVLVALLKTLIGV-LYGK 144 (311)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 33445566666666655556677778888888888 4443
No 182
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=22.37 E-value=3.8e+02 Score=20.82 Aligned_cols=24 Identities=0% Similarity=0.044 Sum_probs=16.5
Q ss_pred HHHHhhccCcccchhhhhHHHHHH
Q 025220 188 LVSWLIFRNPISGMNAVGCAITLI 211 (256)
Q Consensus 188 l~~~~l~~e~~s~~~~~G~~li~~ 211 (256)
-+|..++.|-.-+..+.|..+.++
T Consensus 133 ~iG~~Lyt~Y~l~fe~~s~lLLvA 156 (186)
T MTH00057 133 VLGRVLYTDYYYLFILASFILLVA 156 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777644
No 183
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=22.27 E-value=1.3e+02 Score=24.52 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=17.2
Q ss_pred cccchhhhhHHHHHHHHHHHHh
Q 025220 197 PISGMNAVGCAITLIGCTFYGY 218 (256)
Q Consensus 197 ~~s~~~~~G~~li~~g~~~~~~ 218 (256)
..+.+.|++-+++++|.+++-+
T Consensus 218 y~n~q~wLwwi~~vlG~ll~lr 239 (262)
T KOG4812|consen 218 YFNGQYWLWWIFLVLGLLLFLR 239 (262)
T ss_pred ccccchHHHHHHHHHHHHHHHH
Confidence 4456889999999999887643
No 184
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=22.09 E-value=75 Score=22.24 Aligned_cols=55 Identities=24% Similarity=0.112 Sum_probs=40.4
Q ss_pred hhhhhccccchhHHH-HHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEe
Q 025220 11 LGNVSLRYIPVSFMQ-TIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLT 65 (256)
Q Consensus 11 ~~~~al~~~~~~~~~-ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~ 65 (256)
+++.-++..|.+.+. +-++++-.|+.+.+..+..|-..++.+++..+.+.|+.+.
T Consensus 68 ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 68 LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 444555555555443 3445678889999998888888999999999999998754
No 185
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=21.83 E-value=77 Score=18.75 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=13.2
Q ss_pred hhhhhHHHHHHHHHHHHhhh
Q 025220 201 MNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~ 220 (256)
.-.+|.++++.|.+...+++
T Consensus 28 ~~~~Gi~Lii~g~v~r~~~r 47 (49)
T PF11384_consen 28 AILIGIGLIISGGVGRRRRR 47 (49)
T ss_pred HHHHhHHHHhhhhhhhhhhc
Confidence 34577788888777765443
No 186
>PF10753 DUF2566: Protein of unknown function (DUF2566); InterPro: IPR019689 This entry is represented by Pseudomonas phage PaP3, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=21.76 E-value=1.9e+02 Score=17.56 Aligned_cols=32 Identities=3% Similarity=0.227 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccChhhhhhhhh
Q 025220 26 TIKSFTPATTVVLQWLVWRKYFDWRIWASLVP 57 (256)
Q Consensus 26 ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l 57 (256)
+++...-...+++.+++.||+.+.|...++++
T Consensus 7 ~~Y~ig~~is~~iT~flskDs~~iRllsa~lI 38 (55)
T PF10753_consen 7 IFYAIGAVISALITFFLSKDSLRIRLLSAILI 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45556667788888999999887777766554
No 187
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.56 E-value=1.8e+02 Score=21.82 Aligned_cols=54 Identities=9% Similarity=0.170 Sum_probs=35.0
Q ss_pred hhhhhccccchhHHHH-HHHHHHHHHHHHHHHHh----ccccChhhhhhhhhhhhceeE
Q 025220 11 LGNVSLRYIPVSFMQT-IKSFTPATTVVLQWLVW----RKYFDWRIWASLVPIVGGILL 64 (256)
Q Consensus 11 ~~~~al~~~~~~~~~i-i~~~~pi~~~i~~~i~~----~~~~~~~~~~~~~l~~~Gv~~ 64 (256)
.+.....-+.+++.+. +-.-.-+..++++.+=. +++++..++.++++.++|+.+
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~ 143 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILL 143 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 3334445555554444 34456666666666533 578899999999999999543
No 188
>PRK10655 potE putrescine transporter; Provisional
Probab=21.28 E-value=5.7e+02 Score=22.51 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHhhhccc
Q 025220 201 MNAVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~~~~ 223 (256)
....|....+.|...|...++|.
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~ 431 (438)
T PRK10655 409 AMLYGSIVTFLGWTLYGLISPRF 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34568888899999886644443
No 189
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=21.22 E-value=34 Score=27.22 Aligned_cols=37 Identities=14% Similarity=-0.030 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 180 NLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 180 ~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
-+-..++++.|.--.+......-..|.+-.++|.+-.
T Consensus 12 Glv~~~~lv~G~a~a~~~~~~vl~~gla~~iAga~SM 48 (213)
T PF01988_consen 12 GLVTTFGLVAGVAGAGVSSSVVLLAGLAGLIAGAISM 48 (213)
T ss_pred hHHHHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHH
Confidence 3344566666666666665566666666666665543
No 190
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=21.05 E-value=7.8e+02 Score=24.00 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeE
Q 025220 22 SFMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILL 64 (256)
Q Consensus 22 ~~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~ 64 (256)
+-+.++..+.|+-.+.++.+...+|.+...+.+.+..++|.+-
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t 53 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAIS 53 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 4456778889999999999887777655556677777777653
No 191
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=20.89 E-value=86 Score=18.40 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHhhhccc
Q 025220 203 AVGCAITLIGCTFYGYIRHLL 223 (256)
Q Consensus 203 ~~G~~li~~g~~~~~~~~~~~ 223 (256)
+-|..++-+|.++|...|++.
T Consensus 8 vSG~GLig~G~Yv~~~ark~~ 28 (47)
T PF15055_consen 8 VSGGGLIGAGAYVYAQARKRM 28 (47)
T ss_pred ecccchHHHHHHHHHHHhhcc
Confidence 346677778888888766654
No 192
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.86 E-value=28 Score=28.96 Aligned_cols=18 Identities=6% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHhhccChhHHHHHhhh
Q 025220 164 FYVIHSTTAVTFNVAGNL 181 (256)
Q Consensus 164 ~~~~~~~~~~~~s~~~~l 181 (256)
.+++++.+|+--.++..+
T Consensus 126 m~lLr~~GAs~WtiLaFc 143 (381)
T PF05297_consen 126 MWLLRELGASFWTILAFC 143 (381)
T ss_dssp ------------------
T ss_pred HHHHHHhhhHHHHHHHHH
Confidence 456888888866665544
No 193
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=20.71 E-value=5.2e+02 Score=21.80 Aligned_cols=48 Identities=6% Similarity=0.049 Sum_probs=40.1
Q ss_pred HHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhhcc
Q 025220 175 FNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIRHL 222 (256)
Q Consensus 175 ~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~~~ 222 (256)
--++...+-+-..+-|+++-|.+.+........+..+|..|++.+..+
T Consensus 135 QviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~ 182 (367)
T KOG1582|consen 135 QVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQ 182 (367)
T ss_pred HHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccc
Confidence 445666777788888999999999999999999999999999876543
No 194
>PRK11469 hypothetical protein; Provisional
Probab=20.04 E-value=2.8e+02 Score=21.62 Aligned_cols=45 Identities=11% Similarity=0.127 Sum_probs=27.7
Q ss_pred hhHHHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHH-HHHHHHH
Q 025220 172 AVTFNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAIT-LIGCTFY 216 (256)
Q Consensus 172 ~~~~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li-~~g~~~~ 216 (256)
+...+.+..+.|..+...+..+-+-.....+|+|..+. .+|..+.
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~lG~~mi 85 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMI 85 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666777888888887765544445566666544 4455544
Done!