Query 025220
Match_columns 256
No_of_seqs 129 out of 1471
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 06:01:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.8 1.2E-08 4.1E-13 74.2 6.7 61 160-220 44-105 (137)
2 3b5d_A Multidrug transporter E 98.3 4.6E-07 1.6E-11 63.5 4.5 66 3-68 38-104 (110)
3 2i68_A Protein EMRE; transmemb 98.3 4.6E-07 1.6E-11 65.8 3.5 65 3-67 38-103 (137)
4 3b5d_A Multidrug transporter E 98.3 6.2E-06 2.1E-10 57.7 8.9 58 162-219 46-104 (110)
5 3l1l_A Arginine/agmatine antip 68.4 24 0.00082 29.8 8.7 24 201-224 409-432 (445)
6 4djk_A Probable glutamate/gamm 31.7 2.4E+02 0.0082 24.0 9.3 14 204-217 450-463 (511)
7 2zxe_G FXYD10, phospholemman-l 23.5 47 0.0016 20.6 2.0 17 204-220 26-42 (74)
8 2jo1_A Phospholemman; FXYD1, N 23.4 1.1E+02 0.0037 18.8 3.5 17 204-220 23-39 (72)
9 2jwa_A Receptor tyrosine-prote 17.9 1.3E+02 0.0043 16.6 2.8 24 203-226 21-44 (44)
10 2b2h_A AMT-1, ammonium transpo 15.2 5.2E+02 0.018 21.7 9.2 151 23-176 222-372 (399)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.78 E-value=1.2e-08 Score=74.18 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=42.7
Q ss_pred HHHHHHHhhccChhHHHHH-hhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 160 NFSIFYVIHSTTAVTFNVA-GNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 160 ~~~~~~~~~~~~~~~~s~~-~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
.++....+++.++..+..+ ..+.|+++.++++++++|++++.+++|++++++|+++.+..+
T Consensus 44 ~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3455567899999977777 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.33 E-value=4.6e-07 Score=63.48 Aligned_cols=66 Identities=20% Similarity=0.406 Sum_probs=60.7
Q ss_pred hHHHHHHHhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeec
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVT 68 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~ 68 (256)
+++++.+.+...++++.|.+.+..+ ..+.|+++++++++++||++++.++.++.+++.|++++...
T Consensus 38 ~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4678888999999999999999888 89999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.27 E-value=4.6e-07 Score=65.82 Aligned_cols=65 Identities=20% Similarity=0.419 Sum_probs=49.6
Q ss_pred hHHHHHHHhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeee
Q 025220 3 FVFCINIVLGNVSLRYIPVSFMQTI-KSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSV 67 (256)
Q Consensus 3 ~~~~~~~~~~~~al~~~~~~~~~ii-~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~ 67 (256)
+++++.+.+.+.+++.+|++.+..+ .++.|++++++++++++|++++.+++|+.++++|++++..
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4688899999999999999999888 8999999999999999999999999999999999987754
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.26 E-value=6.2e-06 Score=57.66 Aligned_cols=58 Identities=10% Similarity=0.175 Sum_probs=50.7
Q ss_pred HHHHHhhccChhHHHHH-hhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHHHhh
Q 025220 162 SIFYVIHSTTAVTFNVA-GNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFYGYI 219 (256)
Q Consensus 162 ~~~~~~~~~~~~~~s~~-~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~~~~ 219 (256)
+....+|+.+...+..+ ..+.|+.+.++++++++|++++.+++|..+++.|+...+..
T Consensus 46 ~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44456788888877666 79999999999999999999999999999999999998653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=68.39 E-value=24 Score=29.75 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=17.4
Q ss_pred hhhhhHHHHHHHHHHHHhhhcccc
Q 025220 201 MNAVGCAITLIGCTFYGYIRHLLS 224 (256)
Q Consensus 201 ~~~~G~~li~~g~~~~~~~~~~~~ 224 (256)
..+.|.+.++.|+.+|...+++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcc
Confidence 455688888899988887665543
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=31.74 E-value=2.4e+02 Score=23.97 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=6.2
Q ss_pred hhHHHHHHHHHHHH
Q 025220 204 VGCAITLIGCTFYG 217 (256)
Q Consensus 204 ~G~~li~~g~~~~~ 217 (256)
.+..+++.++.++.
T Consensus 450 ~~~~~~~~~i~~~~ 463 (511)
T 4djk_A 450 VVSFLVVLALPFIL 463 (511)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=23.48 E-value=47 Score=20.55 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHhhh
Q 025220 204 VGCAITLIGCTFYGYIR 220 (256)
Q Consensus 204 ~G~~li~~g~~~~~~~~ 220 (256)
++.++.+.|+++....|
T Consensus 26 fA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 26 VAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHcCc
Confidence 44455566666654433
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=23.41 E-value=1.1e+02 Score=18.77 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHhhh
Q 025220 204 VGCAITLIGCTFYGYIR 220 (256)
Q Consensus 204 ~G~~li~~g~~~~~~~~ 220 (256)
++.++.+.|+++....|
T Consensus 23 fA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 23 IAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 44455566666554433
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=17.92 E-value=1.3e+02 Score=16.61 Aligned_cols=24 Identities=4% Similarity=-0.172 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHhhhccccCC
Q 025220 203 AVGCAITLIGCTFYGYIRHLLSQQ 226 (256)
Q Consensus 203 ~~G~~li~~g~~~~~~~~~~~~~~ 226 (256)
++-.+++.+++.+|-++++.++++
T Consensus 21 vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred HHHHHHHHHHHHhheehhhhhccC
No 10
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=15.23 E-value=5.2e+02 Score=21.71 Aligned_cols=151 Identities=10% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccChhhhhhhhhhhhceeEeeecccccchhhHHHHHHHHHHHHHHHHHHHHHhccCC
Q 025220 23 FMQTIKSFTPATTVVLQWLVWRKYFDWRIWASLVPIVGGILLTSVTELSFNMFGFCAALFGCLATSTKTILAESLLHSYK 102 (256)
Q Consensus 23 ~~~ii~~~~pi~~~i~~~i~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~v~~~~~~~~~~ 102 (256)
+..+..+..-+...+++++. +|++.. ...-...-..+.+-..-+.-.++...+.++++++..-....+.+|+.-++.
T Consensus 222 nT~lAaaag~l~~~~~~~~~--gk~~~~-~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~iDD~ 298 (399)
T 2b2h_A 222 VTNTSAAVAGFVWMVIGWIK--GKPGSL-GIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDES 298 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SCCCHH-HHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCHH-HHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Q ss_pred CChHHHHHHHhHHHHHHHHHHHHHhcCcchhhhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHhhccChhHHH
Q 025220 103 FDSINTVYYMAPFATMILSIPALLLEGSGIMDWLSTHPSPWSAFIIIFSSGVLAFCLNFSIFYVIHSTTAVTFN 176 (256)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 176 (256)
+|...+=....+.+.+......-........-+.....+.......+......+....+..+..++++...+.+
T Consensus 299 l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il~~~~glRv~ 372 (399)
T 2b2h_A 299 LDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVS 372 (399)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCC
T ss_pred CCceeccchhhHHHHHHHHHHccccccCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Done!