Query 025220
Match_columns 256
No_of_seqs 129 out of 1471
Neff 9.8
Searched_HMMs 13730
Date Mon Mar 25 06:01:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025220.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025220hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 25.9 20 0.0015 21.6 2.4 19 207-225 29-47 (91)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 24.8 23 0.0017 15.6 1.8 18 75-92 3-20 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 22.4 84 0.0061 22.0 5.7 31 184-214 95-125 (222)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 9.5 1.9E+02 0.014 17.1 4.1 20 205-224 38-57 (100)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 8.6 3.6E+02 0.026 19.6 15.5 15 204-218 189-203 (447)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 8.0 1.3E+02 0.0098 20.4 3.1 42 175-216 68-109 (199)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.3 2.5E+02 0.018 16.8 4.1 17 207-223 46-62 (107)
8 d1u7ga_ f.44.1.1 (A:) Ammonium 6.1 5.2E+02 0.038 19.4 13.9 75 42-121 249-325 (383)
9 d2axta1 f.26.1.1 (A:10-344) Ph 3.8 6.8E+02 0.049 18.4 4.8 26 195-220 182-207 (335)
10 d1gl4a1 d.22.1.2 (A:399-631) D 3.6 97 0.0071 22.1 -0.2 36 13-49 42-77 (233)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=25.92 E-value=20 Score=21.62 Aligned_cols=19 Identities=16% Similarity=-0.186 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhccccC
Q 025220 207 AITLIGCTFYGYIRHLLSQ 225 (256)
Q Consensus 207 ~li~~g~~~~~~~~~~~~~ 225 (256)
.+.+.|.+.|...|+|+++
T Consensus 29 ~v~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 29 VIPAILMAVGFAWKYRASN 47 (91)
T ss_dssp TTHHHHHHHTTTTTTTTST
T ss_pred HHHHHHHHHhhheeeeccC
Confidence 4456677777766665544
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.81 E-value=23 Score=15.56 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 025220 75 FGFCAALFGCLATSTKTI 92 (256)
Q Consensus 75 ~g~~~~l~a~~~~a~~~v 92 (256)
.|.+..-+++++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777888888888743
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=22.38 E-value=84 Score=22.01 Aligned_cols=31 Identities=13% Similarity=-0.058 Sum_probs=22.5
Q ss_pred HHHHHHHHhhccCcccchhhhhHHHHHHHHH
Q 025220 184 AVAVLVSWLIFRNPISGMNAVGCAITLIGCT 214 (256)
Q Consensus 184 v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~ 214 (256)
+.+.+.+..+.+.+++....+|.++.+.-..
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhhhhh
Confidence 4556667778899999998888877544433
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.48 E-value=1.9e+02 Score=17.11 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHhhhcccc
Q 025220 205 GCAITLIGCTFYGYIRHLLS 224 (256)
Q Consensus 205 G~~li~~g~~~~~~~~~~~~ 224 (256)
++.+.+.+.+.|...|+|++
T Consensus 38 ~I~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 38 AITIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHHhhhhhcc
Confidence 33445666666665555433
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.55 E-value=3.6e+02 Score=19.62 Aligned_cols=15 Identities=7% Similarity=0.091 Sum_probs=6.7
Q ss_pred hhHHHHHHHHHHHHh
Q 025220 204 VGCAITLIGCTFYGY 218 (256)
Q Consensus 204 ~G~~li~~g~~~~~~ 218 (256)
.+....+.++..+..
T Consensus 189 ~~~~~~~~~~~~~~~ 203 (447)
T d1pw4a_ 189 PAFCAILVALFAFAM 203 (447)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHh
Confidence 344444444544443
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=8.04 E-value=1.3e+02 Score=20.40 Aligned_cols=42 Identities=10% Similarity=0.007 Sum_probs=26.7
Q ss_pred HHHHhhhhHHHHHHHHHhhccCcccchhhhhHHHHHHHHHHH
Q 025220 175 FNVAGNLKVAVAVLVSWLIFRNPISGMNAVGCAITLIGCTFY 216 (256)
Q Consensus 175 ~s~~~~l~~v~~~l~~~~l~~e~~s~~~~~G~~li~~g~~~~ 216 (256)
...+...-.+........+++.+++.....+..+.+....-+
T Consensus 68 i~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 68 IPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred eeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhccc
Confidence 333334444555555567788888888888877776665544
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.29 E-value=2.5e+02 Score=16.80 Aligned_cols=17 Identities=12% Similarity=-0.056 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhccc
Q 025220 207 AITLIGCTFYGYIRHLL 223 (256)
Q Consensus 207 ~li~~g~~~~~~~~~~~ 223 (256)
.+.+.|.+.|...+.|+
T Consensus 46 ~~~V~~~~~~~~~~~r~ 62 (107)
T d3ehbb2 46 TIFVCLLLLICIVRFNR 62 (107)
T ss_dssp HHHHHHHHHHHHHHSBT
T ss_pred HHHHHHHHHHHhhhhhc
Confidence 34456666666555543
No 8
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.12 E-value=5.2e+02 Score=19.41 Aligned_cols=75 Identities=12% Similarity=-0.095 Sum_probs=31.9
Q ss_pred HhccccChhhhhhhhhhhhceeEeeec-ccccchhhHHHHHHHHHHHHHH-HHHHHHHhccCCCChHHHHHHHhHHHHHH
Q 025220 42 VWRKYFDWRIWASLVPIVGGILLTSVT-ELSFNMFGFCAALFGCLATSTK-TILAESLLHSYKFDSINTVYYMAPFATMI 119 (256)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~~~~~~g~~~~l~a~~~~a~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (256)
+.++|++...... -.+.|.+-++-. +.-.++...+.+.++++..-.. ..+.+|. + -.||..........+..-
T Consensus 249 ~~~~k~~~~~~~n--G~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~-~--iDD~~~~~~vHg~~Gi~G 323 (383)
T d1u7ga_ 249 ALRGLPSLLGACS--GAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLL-R--VDDPCDVFGVHGVCGIVG 323 (383)
T ss_dssp HHHSSCCHHHHHH--HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH-C--SCCGGGHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHH--HhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhc-c--cccccceEeehhhhHHHH
Confidence 4455666554332 112233322222 2222344456665555444333 3333444 2 235555555555544433
Q ss_pred HH
Q 025220 120 LS 121 (256)
Q Consensus 120 ~~ 121 (256)
.+
T Consensus 324 ~l 325 (383)
T d1u7ga_ 324 CI 325 (383)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 9
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.79 E-value=6.8e+02 Score=18.43 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.2
Q ss_pred cCcccchhhhhHHHHHHHHHHHHhhh
Q 025220 195 RNPISGMNAVGCAITLIGCTFYGYIR 220 (256)
Q Consensus 195 ~e~~s~~~~~G~~li~~g~~~~~~~~ 220 (256)
+-..+|..++|++.+..|.++..++.
T Consensus 182 N~~ynPFHml~Ia~~fG~aLl~AMHG 207 (335)
T d2axta1 182 NILMHPFHQLGVAGVFGGALFCAMHG 207 (335)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcChHHHHhHHHHHHHHHHHHHHH
Confidence 34567778888888888888877654
No 10
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.62 E-value=97 Score=22.15 Aligned_cols=36 Identities=11% Similarity=0.295 Sum_probs=27.7
Q ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHhccccCh
Q 025220 13 NVSLRYIPVSFMQTIKSFTPATTVVLQWLVWRKYFDW 49 (256)
Q Consensus 13 ~~al~~~~~~~~~ii~~~~pi~~~i~~~i~~~~~~~~ 49 (256)
+.+++-+|.+....++.+.|+...+ +|+|-||....
T Consensus 42 ytaIs~IP~~~G~~L~~L~~ig~~i-gWlFA~e~~~a 77 (233)
T d1gl4a1 42 YTAISTIPETVGYSLLPLAPIGGII-GWMFAVEQDGF 77 (233)
T ss_dssp EEEEESCCHHHHGGGTTCTHHHHHH-HHHTCEECTTC
T ss_pred EEEccCCChhHhhhhhhhhhhcCce-eeeEEeecCCc
Confidence 4577788888888888888887766 88888776653
Done!