BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025221
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 108 bits (269), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 7 EVRKGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGK 65
E+ KGPWT++ED ++ VQ +G +RW IAK + G R GK CR RW N+L+P +K+
Sbjct: 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 112
Query: 66 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
T +E+R++ + H + GNRW+ IA+ LPGRTDN IKN+W + MR+K
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/107 (48%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 7 EVRKGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGK 65
E+ KGPWT++ED ++ VQ +G +RW IAK + G R GK CR RW N+L+P +K+
Sbjct: 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 58
Query: 66 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
T +E+R++ + H + GNRW+ IA+ LPGRTDN IKN+W + MR+K
Sbjct: 59 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 107 bits (266), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/107 (47%), Positives = 75/107 (70%), Gaps = 3/107 (2%)
Query: 7 EVRKGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGK 65
E+ KGPWT++ED ++ VQ +G +RW IAK + G R GK CR RW N+L+P +K+
Sbjct: 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG--RIGKQCRERWHNHLNPEVKKTS 81
Query: 66 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
T +E+R++ + H + GNRW+ IA+ LPGRTDN +KN+W + MR+K
Sbjct: 82 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 107 bits (266), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 3/104 (2%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGKMTP 68
KGPWT++ED ++ VQ +G +RW IAK + G R GK CR RW N+L+P +K+ T
Sbjct: 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNPEVKKTSWTE 61
Query: 69 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
+E+R++ + H + GNRW+ IA+ LPGRTDN IKN+W + MR+K
Sbjct: 62 EEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 61 LKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHM 108
L +G T +E++ V++L K+G RWS IA+ L GR + + W H+
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 72/104 (69%), Gaps = 3/104 (2%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHPGLKRGKMTP 68
KGPWT++ED ++ V+ +G ++W IAK + G R GK CR RW N+L+P +K+ T
Sbjct: 7 KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKG--RLGKQCRERWHNHLNPEVKKSSWTE 64
Query: 69 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
+E+R++ E H GNRW+ IA+ LPGRTDN +KN+W + +++K
Sbjct: 65 EEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 59 PGLKRGKMTPQEERLVLELHAKWGNR-WSRIARKLPGRTDNEIKNYWRTHM 108
P L +G T +E++ V+EL K+G + W+ IA+ L GR + + W H+
Sbjct: 3 PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL 53
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 1/102 (0%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQ 69
KGP+TE ED L+ +V+ G + W I NR+ K CR RW N+L P + + TP+
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 70 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111
E+ + + K G++WS IA+ +PGRTDN IKN W + + K+
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 67/107 (62%), Gaps = 1/107 (0%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQ 69
K +TE+ED+ L V +G + W I+++ + R + CR RW NY++P L+ +P+
Sbjct: 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPE 59
Query: 70 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERK 116
E+ L+ + +A++G +W++I++ L R+DN I+N W R +A+ +K
Sbjct: 60 EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWV 54
+R PW+ +ED+LL +G +W+ I+K NR+ + R RW+
Sbjct: 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISKFLK-NRSDNNIRNRWM 95
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLK 62
V + +K +T +ED +L V G W IA + NR + CR RW NYL P +
Sbjct: 4 VNLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSIS 61
Query: 63 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRT 106
T +E+ L+++ ++G +W+ IA+ PGRTD IKN W T
Sbjct: 62 HTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 61 LKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
+K+ T +E+R++ + H + GNRW+ IA+ LPGRTDN IKN+W + MR+K
Sbjct: 1 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 61 LKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112
+K+ T +E+R++ + H + GNRW+ IA+ LPGRTDN IKN+W + MR+K
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHP 59
KGPWT++ED L+ VQ +G +RW IAK + G R GK CR RW N+L+P
Sbjct: 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 61 LKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHM 108
L +G T +E++ +++L K+G RWS IA+ L GR + + W H+
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVNYLHP 59
KGPWT++ED ++ VQ +G +RW IAK + G R GK CR RW N+L+P
Sbjct: 3 KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG--RIGKQCRERWHNHLNP 51
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 61 LKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHM 108
L +G T +E++ V++L K+G RWS IA+ L GR + + W H+
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59
KGPWT++ED ++ VQ +G +RW IAK R GK CR RW N+L+P
Sbjct: 3 KGPWTKEEDQRVIELVQKYGPKRWSVIAK-HLKGRIGKQCRERWHNHLNP 51
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 61 LKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHM 108
L +G T +E++ V+EL K+G RWS IA+ L GR + + W H+
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 13 WTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57
WT +ED L V+ FG + W F+A NRT + C+ RW+ L
Sbjct: 11 WTHEEDEQLRALVRQFGQQDWKFLAS-HFPNRTDQQCQYRWLRVL 54
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 13 WTEQEDILLVNFVQLFGDRRWDFIAKVSGLNR-TGKSCRLRWVNYLHPGLKR 63
W ED +L V +G +W IA + L+R + K C+ RW +L P +K+
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASL--LHRKSAKQCKARWYEWLDPSIKK 61
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 33.5 bits (75), Expect = 0.11, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 65 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 113
K T +E+ L + AK+G RW++I++ + RT ++K+Y R + + K +
Sbjct: 11 KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVK 59
>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
pdb|1MBF|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1
Length = 53
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59
K WT +ED L V+ G W IA NRT C+ RW L+P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1
Length = 52
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59
K WT +ED L V+ G W IA NRT C+ RW L+P
Sbjct: 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNP 51
>pdb|2LLK|A Chain A, Solution Nmr Structure Of The N-Terminal Myb-Like 1 Domain
Of The Human Cyclin-D-Binding Transcription Factor 1
(Hdmp1), Northeast Structural Genomics Consortium (Nesg)
Target Id Hr8011a
Length = 73
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 64 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWR 105
GK TP+E + EL K GN W+ I L GR+ + +K+ R
Sbjct: 24 GKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64
>pdb|2ROH|A Chain A, The Dna Binding Domain Of Rtbp1
Length = 122
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 9/74 (12%)
Query: 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRW---DFIAKVSGLNRTGKSCRLRWVNYLH--- 58
Q +R+ P+T E LLV V+ G RW F A + +RT + +W +H
Sbjct: 27 QRRIRR-PFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85
Query: 59 --PGLKRGKMTPQE 70
P +RG PQE
Sbjct: 86 IAPQQRRGAPVPQE 99
>pdb|2BMM|A Chain A, X-Ray Structure Of A Novel Thermostable Hemoglobin From
The Actinobacterium Thermobifida Fusca
Length = 123
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 9/62 (14%)
Query: 57 LHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARK---------LPGRTDNEIKNYWRTH 107
L P + P EERL L L WG + R+ P R E ++ W TH
Sbjct: 30 LRPMYPEEDLGPAEERLRLFLMQYWGGPRTYSERRGHPRLRMRHFPYRIGAEERDRWLTH 89
Query: 108 MR 109
MR
Sbjct: 90 MR 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,717,777
Number of Sequences: 62578
Number of extensions: 293069
Number of successful extensions: 795
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 44
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)