Query 025221
Match_columns 256
No_of_seqs 229 out of 1425
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 06:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 3.1E-35 1.1E-39 229.4 9.3 104 7-111 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 3.4E-35 1.2E-39 230.4 8.5 105 10-115 1-105 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 1E-34 3.5E-39 234.3 8.6 108 3-111 20-127 (128)
4 3osg_A MYB21; transcription-DN 100.0 5.5E-34 1.9E-38 229.7 10.3 105 5-111 6-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 4.8E-34 1.6E-38 231.4 9.0 103 10-113 2-104 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.9E-32 6.5E-37 228.4 8.3 108 3-111 51-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 2.1E-30 7.3E-35 216.0 4.6 102 7-109 3-105 (159)
8 2dim_A Cell division cycle 5-l 99.9 1.4E-22 4.7E-27 147.2 2.7 66 5-71 4-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 2.8E-21 9.7E-26 155.4 4.9 73 36-109 1-74 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 6E-20 2E-24 160.9 6.3 105 6-111 4-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 3.3E-19 1.1E-23 130.7 3.6 59 50-109 10-68 (73)
12 2juh_A Telomere binding protei 99.7 1.8E-18 6.3E-23 138.0 5.0 84 4-87 11-103 (121)
13 2d9a_A B-MYB, MYB-related prot 99.7 3.6E-18 1.2E-22 120.2 4.7 57 5-62 3-59 (60)
14 2din_A Cell division cycle 5-l 99.7 8.5E-18 2.9E-22 120.5 5.6 59 56-115 2-60 (66)
15 2cu7_A KIAA1915 protein; nucle 99.7 8.7E-18 3E-22 122.5 5.7 58 57-114 3-60 (72)
16 1gvd_A MYB proto-oncogene prot 99.7 5.6E-18 1.9E-22 115.9 4.2 52 8-60 1-52 (52)
17 2roh_A RTBP1, telomere binding 99.7 1.7E-17 5.8E-22 132.5 5.7 80 5-84 26-114 (122)
18 1guu_A C-MYB, MYB proto-oncoge 99.7 1.1E-17 3.6E-22 114.4 3.5 52 8-60 1-52 (52)
19 1ity_A TRF1; helix-turn-helix, 99.7 1.9E-17 6.3E-22 119.8 4.5 63 4-67 4-68 (69)
20 3sjm_A Telomeric repeat-bindin 99.6 6.6E-17 2.2E-21 115.5 3.4 56 7-62 8-64 (64)
21 2d9a_A B-MYB, MYB-related prot 99.6 1.4E-16 4.9E-21 111.9 4.8 54 58-111 3-57 (60)
22 1guu_A C-MYB, MYB proto-oncoge 99.6 2E-16 6.7E-21 108.0 4.8 50 61-110 1-51 (52)
23 2din_A Cell division cycle 5-l 99.6 3.9E-17 1.3E-21 117.0 1.1 59 3-64 2-60 (66)
24 1x41_A Transcriptional adaptor 99.6 1.5E-16 5.2E-21 112.0 4.1 56 5-61 3-58 (60)
25 1gvd_A MYB proto-oncogene prot 99.6 3.5E-16 1.2E-20 106.9 4.8 49 61-109 1-50 (52)
26 1w0t_A Telomeric repeat bindin 99.6 4.4E-16 1.5E-20 106.9 4.3 49 62-110 1-52 (53)
27 1x41_A Transcriptional adaptor 99.6 9.5E-16 3.3E-20 107.9 4.8 53 58-110 3-56 (60)
28 1w0t_A Telomeric repeat bindin 99.6 5.4E-16 1.9E-20 106.4 3.4 49 9-58 1-51 (53)
29 1ity_A TRF1; helix-turn-helix, 99.6 1.7E-15 5.7E-20 109.4 5.5 56 56-111 3-61 (69)
30 2yum_A ZZZ3 protein, zinc fing 99.6 6.2E-16 2.1E-20 113.3 2.1 60 5-65 3-67 (75)
31 2dim_A Cell division cycle 5-l 99.6 2.1E-15 7E-20 109.2 4.7 55 58-112 4-59 (70)
32 2elk_A SPCC24B10.08C protein; 99.6 1.6E-15 5.4E-20 106.2 3.8 52 6-57 5-56 (58)
33 2yum_A ZZZ3 protein, zinc fing 99.5 1.7E-15 5.8E-20 111.0 3.5 56 58-113 3-64 (75)
34 2ltp_A Nuclear receptor corepr 99.3 4.5E-16 1.5E-20 118.1 0.0 57 56-112 9-65 (89)
35 2cu7_A KIAA1915 protein; nucle 99.5 1.7E-15 5.8E-20 110.3 2.4 58 4-63 3-60 (72)
36 3sjm_A Telomeric repeat-bindin 99.5 7.1E-15 2.4E-19 104.9 5.2 51 61-111 9-62 (64)
37 2elk_A SPCC24B10.08C protein; 99.5 6.9E-15 2.4E-19 102.9 5.0 50 59-108 5-56 (58)
38 2llk_A Cyclin-D-binding MYB-li 99.5 1.2E-14 4.2E-19 106.3 4.3 57 2-62 15-71 (73)
39 3zqc_A MYB3; transcription-DNA 99.5 1.4E-14 4.7E-19 116.8 2.9 84 3-92 47-130 (131)
40 2aje_A Telomere repeat-binding 99.5 2.3E-14 8E-19 111.7 4.1 81 4-84 7-96 (105)
41 2cqr_A RSGI RUH-043, DNAJ homo 99.4 8.1E-14 2.8E-18 101.9 5.1 51 59-109 14-68 (73)
42 2ckx_A NGTRF1, telomere bindin 99.4 1.3E-13 4.6E-18 103.1 5.4 69 11-80 1-79 (83)
43 1x58_A Hypothetical protein 49 99.4 2.6E-13 9.1E-18 95.6 4.7 50 61-110 6-58 (62)
44 2ckx_A NGTRF1, telomere bindin 99.4 6.6E-13 2.3E-17 99.4 6.1 49 64-112 1-54 (83)
45 2yus_A SWI/SNF-related matrix- 99.4 2.2E-13 7.5E-18 101.1 3.5 48 60-107 15-62 (79)
46 1gv2_A C-MYB, MYB proto-oncoge 99.4 2.8E-13 9.6E-18 104.9 4.1 55 3-59 49-103 (105)
47 2yus_A SWI/SNF-related matrix- 99.4 3.5E-13 1.2E-17 100.0 4.3 50 6-57 14-63 (79)
48 2ltp_A Nuclear receptor corepr 99.0 9.6E-14 3.3E-18 105.2 0.0 54 4-59 10-63 (89)
49 3osg_A MYB21; transcription-DN 99.3 9.3E-13 3.2E-17 105.4 5.3 52 58-109 6-57 (126)
50 2juh_A Telomere binding protei 99.3 1.2E-12 4.1E-17 104.3 5.2 55 57-111 11-70 (121)
51 2k9n_A MYB24; R2R3 domain, DNA 99.3 6.2E-13 2.1E-17 103.5 3.4 55 3-59 46-100 (107)
52 2aje_A Telomere repeat-binding 99.3 1.6E-12 5.4E-17 101.3 5.5 53 59-111 9-66 (105)
53 2cqr_A RSGI RUH-043, DNAJ homo 99.3 4.2E-13 1.4E-17 98.1 1.9 53 5-58 13-68 (73)
54 1ign_A Protein (RAP1); RAP1,ye 99.3 1.2E-12 4.1E-17 114.8 4.3 54 59-112 4-63 (246)
55 2cjj_A Radialis; plant develop 99.3 6.2E-12 2.1E-16 96.0 6.3 52 62-113 7-62 (93)
56 2roh_A RTBP1, telomere binding 99.2 7.2E-12 2.5E-16 99.9 5.4 54 58-111 26-84 (122)
57 2cjj_A Radialis; plant develop 99.1 3.6E-11 1.2E-15 91.7 2.1 48 9-57 7-57 (93)
58 3hm5_A DNA methyltransferase 1 99.0 2.4E-10 8.1E-15 87.0 5.6 67 45-115 16-87 (93)
59 2eqr_A N-COR1, N-COR, nuclear 99.0 2.7E-10 9.2E-15 80.2 4.4 47 62-108 11-57 (61)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.3E-09 4.4E-14 79.3 4.6 50 60-110 5-58 (72)
61 2eqr_A N-COR1, N-COR, nuclear 98.8 2.4E-09 8.4E-14 75.2 3.7 50 6-57 8-57 (61)
62 2iw5_B Protein corest, REST co 98.8 2.9E-09 1E-13 92.6 4.9 50 61-110 131-180 (235)
63 1x58_A Hypothetical protein 49 98.8 2.1E-09 7E-14 75.7 2.9 49 8-58 6-57 (62)
64 2cqq_A RSGI RUH-037, DNAJ homo 98.7 3.6E-09 1.2E-13 76.9 2.5 51 6-58 4-57 (72)
65 2xag_B REST corepressor 1; ami 98.6 2.2E-08 7.5E-13 96.0 3.3 47 64-110 381-427 (482)
66 1wgx_A KIAA1903 protein; MYB D 98.5 5.9E-08 2E-12 70.6 4.4 49 62-110 7-59 (73)
67 1fex_A TRF2-interacting telome 98.5 4.4E-08 1.5E-12 68.5 2.2 48 10-58 2-58 (59)
68 1wgx_A KIAA1903 protein; MYB D 98.4 1.8E-07 6E-12 68.1 4.2 51 8-59 6-59 (73)
69 2iw5_B Protein corest, REST co 98.4 1.4E-07 4.8E-12 82.1 3.5 49 8-58 131-179 (235)
70 1fex_A TRF2-interacting telome 98.4 2.9E-07 1E-11 64.3 4.0 47 63-109 2-58 (59)
71 4eef_G F-HB80.4, designed hema 98.2 4.9E-07 1.7E-11 65.5 2.2 43 63-105 20-66 (74)
72 2yqk_A Arginine-glutamic acid 98.2 2.2E-06 7.6E-11 60.4 5.4 47 59-105 5-52 (63)
73 1ug2_A 2610100B20RIK gene prod 98.1 2.5E-06 8.5E-11 64.1 5.0 49 65-113 35-86 (95)
74 2lr8_A CAsp8-associated protei 97.4 3.9E-07 1.3E-11 64.9 0.0 46 65-111 16-64 (70)
75 4iej_A DNA methyltransferase 1 98.0 5.9E-06 2E-10 62.6 5.5 61 51-115 22-87 (93)
76 4eef_G F-HB80.4, designed hema 98.0 8E-07 2.8E-11 64.4 0.5 45 9-54 19-66 (74)
77 1ofc_X ISWI protein; nuclear p 98.0 9.3E-06 3.2E-10 73.8 7.4 101 11-112 111-277 (304)
78 2yqk_A Arginine-glutamic acid 97.9 9.1E-06 3.1E-10 57.2 3.8 49 5-55 4-53 (63)
79 2crg_A Metastasis associated p 97.7 5E-05 1.7E-09 54.5 5.1 43 63-105 8-51 (70)
80 4a69_C Nuclear receptor corepr 97.6 5.1E-05 1.7E-09 57.6 4.7 44 63-106 43-86 (94)
81 2xag_B REST corepressor 1; ami 97.6 2.5E-05 8.6E-10 74.9 3.5 48 8-57 378-425 (482)
82 3hm5_A DNA methyltransferase 1 97.5 5.4E-05 1.9E-09 57.4 3.1 50 8-58 28-81 (93)
83 2crg_A Metastasis associated p 97.3 0.00012 4.2E-09 52.5 3.0 45 9-55 7-52 (70)
84 4a69_C Nuclear receptor corepr 97.3 0.00013 4.5E-09 55.3 3.0 44 10-55 43-86 (94)
85 2ebi_A DNA binding protein GT- 97.2 0.00013 4.5E-09 54.0 2.6 51 63-113 4-68 (86)
86 2ebi_A DNA binding protein GT- 97.1 9.5E-05 3.2E-09 54.7 0.5 50 8-57 2-63 (86)
87 1ug2_A 2610100B20RIK gene prod 97.1 0.00021 7.3E-09 53.6 2.4 46 11-57 34-81 (95)
88 4b4c_A Chromodomain-helicase-D 96.9 0.0017 5.8E-08 55.2 6.9 47 65-111 136-197 (211)
89 2y9y_A Imitation switch protei 96.9 0.0029 9.8E-08 58.9 8.5 104 11-114 124-295 (374)
90 2lr8_A CAsp8-associated protei 95.9 0.00019 6.5E-09 51.1 0.0 46 11-58 15-62 (70)
91 4iej_A DNA methyltransferase 1 95.4 0.0096 3.3E-07 44.9 3.1 49 8-57 28-80 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.6 0.063 2.2E-06 37.7 5.2 48 62-109 6-58 (64)
93 1irz_A ARR10-B; helix-turn-hel 92.9 0.1 3.4E-06 36.6 3.8 51 6-56 3-56 (64)
94 1ofc_X ISWI protein; nuclear p 92.7 0.15 5.1E-06 46.2 5.7 46 63-108 110-156 (304)
95 4b4c_A Chromodomain-helicase-D 91.0 0.28 9.6E-06 41.2 5.2 50 62-111 6-60 (211)
96 2xb0_X Chromo domain-containin 90.0 0.19 6.4E-06 44.8 3.4 28 11-38 169-196 (270)
97 2y9y_A Imitation switch protei 79.2 2 6.7E-05 39.9 4.7 32 9-40 227-261 (374)
98 2xb0_X Chromo domain-containin 75.5 4.7 0.00016 35.7 5.9 48 63-110 3-55 (270)
99 2rq5_A Protein jumonji; develo 71.2 1.9 6.5E-05 33.7 2.1 46 31-79 64-113 (121)
100 2li6_A SWI/SNF chromatin-remod 70.5 1.6 5.6E-05 33.5 1.6 39 20-59 53-98 (116)
101 1ig6_A MRF-2, modulator recogn 65.8 2.8 9.5E-05 31.6 2.0 40 20-59 37-87 (107)
102 2o8x_A Probable RNA polymerase 64.9 5.2 0.00018 26.5 3.1 42 69-111 18-59 (70)
103 2jrz_A Histone demethylase jar 62.8 2.4 8.3E-05 32.6 1.1 40 20-59 44-93 (117)
104 1ku3_A Sigma factor SIGA; heli 62.4 6.2 0.00021 26.8 3.1 45 66-112 11-59 (73)
105 1u78_A TC3 transposase, transp 60.1 45 0.0015 24.7 8.1 90 9-104 3-100 (141)
106 2p7v_B Sigma-70, RNA polymeras 58.0 6.2 0.00021 26.4 2.5 41 70-111 9-53 (68)
107 3cz6_A DNA-binding protein RAP 56.1 7.7 0.00026 31.9 3.0 30 6-38 110-147 (168)
108 1c20_A DEAD ringer protein; DN 54.4 3 0.0001 32.5 0.3 40 20-59 56-106 (128)
109 2eqy_A RBP2 like, jumonji, at 54.1 4.3 0.00015 31.4 1.2 39 20-58 46-94 (122)
110 2jxj_A Histone demethylase jar 53.3 3 0.0001 30.6 0.2 39 20-58 40-88 (96)
111 1k78_A Paired box protein PAX5 52.9 38 0.0013 25.8 6.7 93 10-107 30-142 (149)
112 3hug_A RNA polymerase sigma fa 52.3 14 0.00048 26.2 3.7 42 69-111 40-81 (92)
113 2lm1_A Lysine-specific demethy 50.8 3.3 0.00011 31.1 0.0 39 20-58 48-96 (107)
114 2q1z_A RPOE, ECF SIGE; ECF sig 49.0 22 0.00074 27.8 4.7 31 80-111 149-179 (184)
115 2cxy_A BAF250B subunit, HBAF25 48.9 6 0.00021 30.6 1.3 39 20-58 55-103 (125)
116 2li6_A SWI/SNF chromatin-remod 47.0 8.8 0.0003 29.3 2.0 39 73-111 53-99 (116)
117 3i4p_A Transcriptional regulat 46.3 15 0.00053 28.9 3.4 43 69-112 3-46 (162)
118 1x3u_A Transcriptional regulat 45.9 26 0.00088 23.6 4.2 42 66-110 17-58 (79)
119 2k27_A Paired box protein PAX- 45.4 64 0.0022 24.8 7.0 77 11-92 24-111 (159)
120 2kk0_A AT-rich interactive dom 45.1 12 0.0004 29.8 2.5 54 20-73 68-134 (145)
121 3ulq_B Transcriptional regulat 44.2 27 0.00092 25.0 4.2 47 62-111 26-72 (90)
122 1je8_A Nitrate/nitrite respons 42.7 23 0.0008 24.6 3.6 43 65-110 21-63 (82)
123 2cxy_A BAF250B subunit, HBAF25 42.5 45 0.0015 25.5 5.5 42 73-114 55-108 (125)
124 3c57_A Two component transcrip 42.1 24 0.00082 25.3 3.6 44 65-111 27-70 (95)
125 2lm1_A Lysine-specific demethy 42.0 21 0.00071 26.5 3.3 39 73-111 48-98 (107)
126 2jrz_A Histone demethylase jar 41.7 18 0.0006 27.6 2.9 40 73-112 44-95 (117)
127 1kkx_A Transcription regulator 41.3 2.4 8.3E-05 33.0 -2.1 38 20-58 52-96 (123)
128 1kkx_A Transcription regulator 41.2 12 0.0004 29.0 1.8 41 73-113 52-100 (123)
129 1fse_A GERE; helix-turn-helix 40.9 27 0.00093 23.0 3.6 45 64-111 10-54 (74)
130 2eqy_A RBP2 like, jumonji, at 39.6 87 0.003 23.8 6.7 41 73-113 46-98 (122)
131 2yqf_A Ankyrin-1; death domain 39.2 23 0.00079 26.5 3.2 36 66-102 13-48 (111)
132 3i4p_A Transcriptional regulat 39.1 9.6 0.00033 30.2 1.1 44 16-61 3-46 (162)
133 1or7_A Sigma-24, RNA polymeras 38.9 33 0.0011 26.8 4.3 31 80-111 154-184 (194)
134 1tty_A Sigma-A, RNA polymerase 38.7 24 0.00083 24.7 3.1 41 70-111 22-66 (87)
135 2jpc_A SSRB; DNA binding prote 37.8 33 0.0011 21.8 3.5 39 71-111 3-41 (61)
136 3e7l_A Transcriptional regulat 35.9 20 0.00069 23.8 2.2 29 16-45 19-47 (63)
137 2cuf_A FLJ21616 protein; homeo 35.4 1.2E+02 0.0041 21.6 6.6 51 62-114 10-79 (95)
138 2rnj_A Response regulator prot 35.1 30 0.001 24.4 3.2 44 65-111 29-72 (91)
139 2dbb_A Putative HTH-type trans 34.6 43 0.0015 25.6 4.3 43 69-112 9-52 (151)
140 2of5_H Leucine-rich repeat and 32.7 27 0.00092 26.5 2.7 31 71-102 13-43 (118)
141 1xsv_A Hypothetical UPF0122 pr 32.4 51 0.0018 24.5 4.2 41 70-111 29-69 (113)
142 2of5_A Death domain-containing 32.0 31 0.0011 26.2 2.9 41 58-102 14-54 (114)
143 3cz6_A DNA-binding protein RAP 30.6 37 0.0013 27.8 3.3 17 59-75 110-126 (168)
144 3mzy_A RNA polymerase sigma-H 30.4 44 0.0015 25.0 3.6 31 80-111 122-152 (164)
145 2o71_A Death domain-containing 29.8 33 0.0011 26.1 2.7 39 60-102 16-54 (115)
146 1rp3_A RNA polymerase sigma fa 29.1 56 0.0019 26.2 4.3 39 72-111 193-231 (239)
147 2p1m_A SKP1-like protein 1A; F 28.7 29 0.001 27.6 2.4 36 34-77 119-154 (160)
148 2lfw_A PHYR sigma-like domain; 28.5 42 0.0014 25.9 3.2 42 69-111 96-137 (157)
149 1wxp_A THO complex subunit 1; 28.3 44 0.0015 24.9 3.2 30 72-102 19-48 (110)
150 2e1c_A Putative HTH-type trans 27.9 47 0.0016 26.5 3.5 42 69-111 27-69 (171)
151 1hlv_A CENP-B, major centromer 27.8 1.8E+02 0.0061 21.2 7.6 93 9-111 4-111 (131)
152 2cyy_A Putative HTH-type trans 27.6 53 0.0018 25.2 3.7 43 69-112 7-50 (151)
153 2kk0_A AT-rich interactive dom 27.1 42 0.0014 26.5 3.0 41 73-113 68-121 (145)
154 2dms_A Homeobox protein OTX2; 26.9 1.5E+02 0.0052 20.2 7.2 46 62-108 10-59 (80)
155 2e1c_A Putative HTH-type trans 26.5 31 0.0011 27.6 2.2 44 16-61 27-70 (171)
156 1p4w_A RCSB; solution structur 26.0 91 0.0031 22.6 4.6 46 63-111 32-77 (99)
157 1ntc_A Protein (nitrogen regul 24.5 45 0.0015 23.8 2.5 29 16-45 51-79 (91)
158 3eyi_A Z-DNA-binding protein 1 24.3 44 0.0015 23.6 2.2 37 13-50 7-43 (72)
159 1ntc_A Protein (nitrogen regul 24.3 82 0.0028 22.3 3.9 35 68-103 50-84 (91)
160 1tc3_C Protein (TC3 transposas 24.2 99 0.0034 17.8 3.8 38 65-104 5-42 (51)
161 1s7o_A Hypothetical UPF0122 pr 22.3 81 0.0028 23.5 3.7 43 66-110 23-65 (113)
162 2dn0_A Zinc fingers and homeob 22.3 1.2E+02 0.004 20.7 4.3 49 56-105 5-57 (76)
163 1qgp_A Protein (double strande 22.2 61 0.0021 22.5 2.8 44 67-111 12-59 (77)
164 2cg4_A Regulatory protein ASNC 21.7 81 0.0028 24.1 3.7 43 69-112 8-51 (152)
165 3v7d_A Suppressor of kinetocho 20.8 39 0.0013 27.2 1.7 36 33-76 126-161 (169)
166 2jvw_A Uncharacterized protein 20.7 53 0.0018 24.0 2.1 46 18-76 18-70 (88)
167 2dmq_A LIM/homeobox protein LH 20.6 2.1E+02 0.007 19.4 7.6 45 62-107 10-58 (80)
168 1umq_A Photosynthetic apparatu 20.1 55 0.0019 23.3 2.2 30 15-45 40-69 (81)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=3.1e-35 Score=229.45 Aligned_cols=104 Identities=49% Similarity=0.949 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCccc
Q 025221 7 EVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWS 86 (256)
Q Consensus 7 ~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~ 86 (256)
++++|+||+|||++|+++|.+||..+|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhh-cCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 4789999999999999999999988999999999 699999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHhHHH
Q 025221 87 RIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 87 ~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
.||++|||||+++|++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=3.4e-35 Score=230.45 Aligned_cols=105 Identities=33% Similarity=0.716 Sum_probs=100.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCcccccc
Q 025221 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIA 89 (256)
Q Consensus 10 kg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia 89 (256)
||+||+|||++|+++|..||..+|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHT-TTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhc-CCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 6899999999999999999988999999999 599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHHHHHhh
Q 025221 90 RKLPGRTDNEIKNYWRTHMRKKAQER 115 (256)
Q Consensus 90 ~~l~gRt~~~~knrw~~~lrk~~~~~ 115 (256)
++|+|||+++||+||+.++++..+..
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999876543
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1e-34 Score=234.29 Aligned_cols=108 Identities=47% Similarity=0.906 Sum_probs=102.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcC
Q 025221 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWG 82 (256)
Q Consensus 3 ~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G 82 (256)
+++|.+++|+||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus 20 ~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G 98 (128)
T 1h8a_C 20 VLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 98 (128)
T ss_dssp --CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHS-SSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC
T ss_pred hhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHh-cCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC
Confidence 58899999999999999999999999988899999999 69999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 83 NRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 83 ~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
++|+.||++|||||+++|++||+.+++++
T Consensus 99 ~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 99 NRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999875
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=5.5e-34 Score=229.72 Aligned_cols=105 Identities=36% Similarity=0.653 Sum_probs=100.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCc
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNR 84 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~ 84 (256)
.+..++|+||+|||++|+++|..||. +|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATF-PNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTC-TTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHc-CCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999996 999999999 5999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 85 WSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 85 W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
|+.||+.|+|||+++||+||+.++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999873
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=4.8e-34 Score=231.40 Aligned_cols=103 Identities=41% Similarity=0.756 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCcccccc
Q 025221 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIA 89 (256)
Q Consensus 10 kg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia 89 (256)
||+||+|||++|+.+|..||..+|..||+.| |+|++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFL-PNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSC-TTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHH-CCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 7999999999999999999988999999999 699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHhHHHHH
Q 025221 90 RKLPGRTDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 90 ~~l~gRt~~~~knrw~~~lrk~~~ 113 (256)
++|+|||+++|++||+.+++++..
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred HHcCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999988643
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.9e-32 Score=228.45 Aligned_cols=108 Identities=48% Similarity=0.920 Sum_probs=104.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcC
Q 025221 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWG 82 (256)
Q Consensus 3 ~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G 82 (256)
+++|.+++|+||+|||++|+.+|..||..+|..||+.| |+|++.||++||.++|+|.+++++||+|||++|++++.+||
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g 129 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG 129 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTS-TTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHc-CCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence 57899999999999999999999999987899999999 69999999999999999999999999999999999999999
Q ss_pred CccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 83 NRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 83 ~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
++|+.||++|||||+++|||||+.+++++
T Consensus 130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=2.1e-30 Score=216.04 Aligned_cols=102 Identities=36% Similarity=0.700 Sum_probs=60.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCC-cc
Q 025221 7 EVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN-RW 85 (256)
Q Consensus 7 ~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~-~W 85 (256)
.+++|+||+|||++|+++|.+||..+|..||+.| ++|+++||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 4689999999999999999999988999999999 599999999999999999999999999999999999999997 79
Q ss_pred ccccccCCCCCHHHHHHHHHHHhH
Q 025221 86 SRIARKLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 86 ~~Ia~~l~gRt~~~~knrw~~~lr 109 (256)
..||..|+|||+.||++||.++|+
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhC
Confidence 999999999999999999998874
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-22 Score=147.20 Aligned_cols=66 Identities=26% Similarity=0.607 Sum_probs=63.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHH
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEE 71 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED 71 (256)
.+.+++|+||+|||++|+++|.+||..+|..||+.| ++|+++||++||.++|+|.+++++||+|||
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l-~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLL-HRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHS-TTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHh-cCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 478999999999999999999999988999999999 599999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.83 E-value=2.8e-21 Score=155.44 Aligned_cols=73 Identities=37% Similarity=0.749 Sum_probs=50.2
Q ss_pred hhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhH
Q 025221 36 IAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 36 IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lr 109 (256)
||+.| |+|++.||+.||.++|+|.+++++||+|||++|+++|++||. +|..||..|+|||+.||++||.++|+
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred Ccccc-CCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 78889 799999999999999999999999999999999999999997 79999999999999999999998875
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.79 E-value=6e-20 Score=160.94 Aligned_cols=105 Identities=25% Similarity=0.382 Sum_probs=93.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC-----chhhhhhcccccccccccchhhhccCCCCc------------------
Q 025221 6 EEVRKGPWTEQEDILLVNFVQLFGDRR-----WDFIAKVSGLNRTGKSCRLRWVNYLHPGLK------------------ 62 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~~lv~~~g~~~-----W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~------------------ 62 (256)
+.+++++||+|||++|+++|+++|..+ |..||+.| ||||+.|||.||+.+|.+.++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L-pGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn 82 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV-PNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN 82 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS-TTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc-CCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence 467899999999999999999998643 99999999 799999999999999999987
Q ss_pred -----------CCCCCHHHHHHHHHHHhh-c-------------------------------------------------
Q 025221 63 -----------RGKMTPQEERLVLELHAK-W------------------------------------------------- 81 (256)
Q Consensus 63 -----------k~~WT~EED~~Ll~lv~~-~------------------------------------------------- 81 (256)
+..||.+||..|...+++ |
T Consensus 83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 162 (246)
T 1ign_A 83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT 162 (246)
T ss_dssp BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence 899999999999998876 1
Q ss_pred ----CC----ccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 82 ----GN----RWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 82 ----G~----~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
|. .|.+||+.+|+||.+++|+||+.++++.
T Consensus 163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 11 6999999999999999999999999876
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-19 Score=130.65 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=48.1
Q ss_pred cchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhH
Q 025221 50 RLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 50 r~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lr 109 (256)
--||.++|+|.+++++||+|||++|+++|++||++|+.||+.| |||+++||+||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999 9999999999997654
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=1.8e-18 Score=137.97 Aligned_cols=84 Identities=24% Similarity=0.374 Sum_probs=77.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcc---cccccccccchhhhccC-----CCCcCC-CCCHHHHHHH
Q 025221 4 QQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSG---LNRTGKSCRLRWVNYLH-----PGLKRG-KMTPQEERLV 74 (256)
Q Consensus 4 l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lg---p~Rt~~qcr~Rw~~~L~-----p~l~k~-~WT~EED~~L 74 (256)
+.+..++++||+|||+.|+++|++||.++|..|++.+. ++||+.+|++||+++|. |.++++ +|+++|+..|
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 35678999999999999999999999889999998742 58999999999999998 999999 9999999999
Q ss_pred HHHHhhcCCcccc
Q 025221 75 LELHAKWGNRWSR 87 (256)
Q Consensus 75 l~lv~~~G~~W~~ 87 (256)
++++..+||+|.+
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999987
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3.6e-18 Score=120.17 Aligned_cols=57 Identities=33% Similarity=0.624 Sum_probs=54.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCc
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLK 62 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~ 62 (256)
.|.+++++||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHF-PNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHC-SSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-cCCCHHHHHHHHHHHcCCccC
Confidence 588999999999999999999999987999999999 699999999999999999875
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-18 Score=120.47 Aligned_cols=59 Identities=24% Similarity=0.289 Sum_probs=56.2
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHHHHhh
Q 025221 56 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQER 115 (256)
Q Consensus 56 ~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~~~~ 115 (256)
+|+|.+++++||+|||++|+++|++||++|..||. |+|||++|||+||+.+|++..+..
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999987654
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.71 E-value=8.7e-18 Score=122.52 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=54.9
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHHHHh
Q 025221 57 LHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQE 114 (256)
Q Consensus 57 L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~~~ 114 (256)
++|.+++++||+|||++|+++|.+||++|..||++|+|||++|||+||+.+++++.+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999987554
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.70 E-value=5.6e-18 Score=115.86 Aligned_cols=52 Identities=50% Similarity=0.958 Sum_probs=49.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCC
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPG 60 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~ 60 (256)
+++|+||+|||++|+++|.+||..+|..||+.| ++|+++||++||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHL-KGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTS-TTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 589999999999999999999977899999999 6999999999999999984
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.69 E-value=1.7e-17 Score=132.54 Aligned_cols=80 Identities=29% Similarity=0.401 Sum_probs=73.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcc---cccccccccchhhhcc-----CCCCcCCCCCHHH-HHHHH
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSG---LNRTGKSCRLRWVNYL-----HPGLKRGKMTPQE-ERLVL 75 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lg---p~Rt~~qcr~Rw~~~L-----~p~l~k~~WT~EE-D~~Ll 75 (256)
....++++||+|||+.|+++|++||.++|..|++.+. ++||+.||++||++++ +|.++++.|+++| +..|+
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 3457899999999999999999999889999998641 5899999999999999 8999999999999 89999
Q ss_pred HHHhhcCCc
Q 025221 76 ELHAKWGNR 84 (256)
Q Consensus 76 ~lv~~~G~~ 84 (256)
+++..||++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999985
No 18
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.68 E-value=1.1e-17 Score=114.40 Aligned_cols=52 Identities=37% Similarity=0.655 Sum_probs=48.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCC
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPG 60 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~ 60 (256)
+++|+||+|||++|+++|.+||..+|..||+.| ++|++.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYL-PNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTS-TTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHc-CCCCHHHHHHHHHHHcCcC
Confidence 579999999999999999999977999999999 6999999999999999984
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.68 E-value=1.9e-17 Score=119.77 Aligned_cols=63 Identities=22% Similarity=0.311 Sum_probs=58.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccc--ccccccccchhhhccCCCCcCCCCC
Q 025221 4 QQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGL--NRTGKSCRLRWVNYLHPGLKRGKMT 67 (256)
Q Consensus 4 l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp--~Rt~~qcr~Rw~~~L~p~l~k~~WT 67 (256)
..+..++++||+|||++|+++|++||.++|..||+.| + +|++.||++||.++|+|.+.++..+
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS-CCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc-CcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 3577899999999999999999999988999999999 7 9999999999999999999988754
No 20
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=6.6e-17 Score=115.52 Aligned_cols=56 Identities=29% Similarity=0.458 Sum_probs=49.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcc-cccccccccchhhhccCCCCc
Q 025221 7 EVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSG-LNRTGKSCRLRWVNYLHPGLK 62 (256)
Q Consensus 7 ~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lg-p~Rt~~qcr~Rw~~~L~p~l~ 62 (256)
..++++||+|||++|+++|++||.++|..||+.++ .+||+.||++||++++.+.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 46899999999999999999999889999999862 389999999999999998774
No 21
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.4e-16 Score=111.92 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=50.8
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcC-CccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||+++|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 5789999999999999999999999 59999999999999999999999998753
No 22
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.63 E-value=2e-16 Score=108.05 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=46.2
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 61 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 61 l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999999863
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.9e-17 Score=117.01 Aligned_cols=59 Identities=22% Similarity=0.436 Sum_probs=54.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCC
Q 025221 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64 (256)
Q Consensus 3 ~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~ 64 (256)
.|+|.+++++||+|||++|+++|+.||. +|..||+ + ++||+.||++||.++|+|.++++
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~-~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-I-IGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-H-HSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-c-cCcCHHHHHHHHHHHhChHhcCC
Confidence 5899999999999999999999999995 9999999 6 57999999999999999877654
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.5e-16 Score=112.02 Aligned_cols=56 Identities=21% Similarity=0.400 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCC
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGL 61 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l 61 (256)
.+.+++++||+|||++|+++|++||.++|..||+.| ++||+.||++||.++|.+..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~-~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQM-CTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHH-TTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHh-CCCCHHHHHHHHHHHccCCC
Confidence 367899999999999999999999988999999999 59999999999999998653
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.61 E-value=3.5e-16 Score=106.88 Aligned_cols=49 Identities=35% Similarity=0.748 Sum_probs=46.6
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhH
Q 025221 61 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 61 l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lr 109 (256)
+++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||.++|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999998 69999999999999999999999886
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=4.4e-16 Score=106.90 Aligned_cols=49 Identities=29% Similarity=0.434 Sum_probs=46.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcC-CccccccccCC--CCCHHHHHHHHHHHhHH
Q 025221 62 KRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRt~~~~knrw~~~lrk 110 (256)
++++||+|||++|+++|.+|| ++|+.||..|+ |||+.||++||+++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 59999999999 99999999999999875
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=9.5e-16 Score=107.90 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=49.5
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcC-CccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
.+.+.+++||+|||++|+++|++|| ++|.+||++|+|||+.|||+||.++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678999999999999999999999 7999999999999999999999998763
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=5.4e-16 Score=106.43 Aligned_cols=49 Identities=27% Similarity=0.407 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhhhhccc--ccccccccchhhhccC
Q 025221 9 RKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGL--NRTGKSCRLRWVNYLH 58 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp--~Rt~~qcr~Rw~~~L~ 58 (256)
++|+||+|||++|+++|++||.++|..||+.+ + +||+.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~-~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY-KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS-CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc-CCCCCCHHHHHHHHHHHHc
Confidence 58999999999999999999988999999999 7 8999999999999875
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.58 E-value=1.7e-15 Score=109.44 Aligned_cols=56 Identities=29% Similarity=0.391 Sum_probs=52.0
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHhhcC-CccccccccCC--CCCHHHHHHHHHHHhHHH
Q 025221 56 YLHPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 56 ~L~p~l~k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~--gRt~~~~knrw~~~lrk~ 111 (256)
..++...+++||+|||++|+++|.+|| ++|+.||..|+ |||+.|||+||+++|+..
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~ 61 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCC
Confidence 456678899999999999999999999 59999999999 999999999999999875
No 30
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.2e-16 Score=113.32 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=54.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CCchhhhhhcccccccccccchhhhccCCCCcCCC
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGD-----RRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGK 65 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~-----~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~ 65 (256)
.|.+++++||+|||++|+++|..||. .+|..||+.| ++||+.||+.||+++|.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~-~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL-GNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH-SSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhcCC
Confidence 58899999999999999999999996 6899999999 599999999999999988766553
No 31
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=109.19 Aligned_cols=55 Identities=25% Similarity=0.430 Sum_probs=51.4
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcC-CccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.|||+||+++|+..+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcc
Confidence 4678999999999999999999999 799999999999999999999999998653
No 32
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.56 E-value=1.6e-15 Score=106.17 Aligned_cols=52 Identities=25% Similarity=0.473 Sum_probs=47.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhcc
Q 025221 6 EEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L 57 (256)
..+.+++||+|||++|+++|++||.++|..||+.|+.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999998899999999933899999999999876
No 33
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-15 Score=110.98 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=51.9
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcC------CccccccccCCCCCHHHHHHHHHHHhHHHHH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWG------NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G------~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~~ 113 (256)
+|.+.+++||+|||++|+++|.+|| ++|..||.+|+|||..||++||+++|++..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7999999999999999999999999887543
No 34
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.31 E-value=4.5e-16 Score=118.06 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=53.9
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 56 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 56 ~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
.++|.+++++||+|||++|+++|.+||++|..||.+|+|||++|||+||+.++++..
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 567889999999999999999999999999999999999999999999999998753
No 35
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.53 E-value=1.7e-15 Score=110.32 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=53.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcC
Q 025221 4 QQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKR 63 (256)
Q Consensus 4 l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k 63 (256)
..|.+++|+||+|||++|+++|+.||. +|..||+.| ++||+.||+.||.++|.+.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~-~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLI-GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHH-SSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999995 999999999 6999999999999999765554
No 36
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.53 E-value=7.1e-15 Score=104.93 Aligned_cols=51 Identities=35% Similarity=0.545 Sum_probs=46.1
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCC-ccccccccCC--CCCHHHHHHHHHHHhHHH
Q 025221 61 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLP--GRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 61 l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~--gRt~~~~knrw~~~lrk~ 111 (256)
.++++||+|||++|+++|.+||. +|..||+.++ |||+.|||+||+++++..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 47889999999999999999995 8999999865 999999999999998753
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.53 E-value=6.9e-15 Score=102.86 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=46.5
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcC-CccccccccCC-CCCHHHHHHHHHHHh
Q 025221 59 PGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP-GRTDNEIKNYWRTHM 108 (256)
Q Consensus 59 p~l~k~~WT~EED~~Ll~lv~~~G-~~W~~Ia~~l~-gRt~~~~knrw~~~l 108 (256)
..+.+++||+|||++|+++|++|| .+|..||++|+ |||+.|||+||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999 79999999999 999999999998874
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-14 Score=106.30 Aligned_cols=57 Identities=19% Similarity=0.226 Sum_probs=47.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCc
Q 025221 2 VVQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLK 62 (256)
Q Consensus 2 ~~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~ 62 (256)
-.++|++++|+||+|||++|+++|++||. +|..||+.| +||+.||++||.. |....+
T Consensus 15 ~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 15 YFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp ----CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred eecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence 35889999999999999999999999995 699999999 6999999999985 544443
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.46 E-value=1.4e-14 Score=116.84 Aligned_cols=84 Identities=21% Similarity=0.330 Sum_probs=62.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcC
Q 025221 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWG 82 (256)
Q Consensus 3 ~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G 82 (256)
+|+|.+++|+||+|||++|+.+|..|| .+|..||+.| |+||+.||+.||.++|++.+..+.|+.+- +......+
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l-~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk 120 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLI-PGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKK 120 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTS-TTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC--
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHc-CCCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhh
Confidence 578999999999999999999999999 6899999999 69999999999999999999999887652 11112334
Q ss_pred CccccccccC
Q 025221 83 NRWSRIARKL 92 (256)
Q Consensus 83 ~~W~~Ia~~l 92 (256)
.+|..|++.|
T Consensus 121 ~~~~~i~k~~ 130 (131)
T 3zqc_A 121 RKAADVPKKL 130 (131)
T ss_dssp ----------
T ss_pred hhhhhcchhc
Confidence 5677777665
No 40
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.46 E-value=2.3e-14 Score=111.66 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=70.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcc---cccccccccchhhhcc-----CCCCcCCCCCHHHHHH-H
Q 025221 4 QQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSG---LNRTGKSCRLRWVNYL-----HPGLKRGKMTPQEERL-V 74 (256)
Q Consensus 4 l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lg---p~Rt~~qcr~Rw~~~L-----~p~l~k~~WT~EED~~-L 74 (256)
..+..++++||+|||+.|+++|++||.++|..|++.+. ++||+.+|++||++++ +|.++++.=+++|--. +
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 45678999999999999999999999889999998652 5899999999999999 6999999888877766 8
Q ss_pred HHHHhhcCCc
Q 025221 75 LELHAKWGNR 84 (256)
Q Consensus 75 l~lv~~~G~~ 84 (256)
++|+..+|+.
T Consensus 87 ~~~~~~~~~~ 96 (105)
T 2aje_A 87 LNAHGYWTQQ 96 (105)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8998888763
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=8.1e-14 Score=101.93 Aligned_cols=51 Identities=14% Similarity=0.317 Sum_probs=47.5
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcC----CccccccccCCCCCHHHHHHHHHHHhH
Q 025221 59 PGLKRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 59 p~l~k~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~lr 109 (256)
+...+++||.|||++|++++..|| ++|.+||++|||||.++|++||+.+++
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456788999999999999999999 689999999999999999999998875
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.42 E-value=1.3e-13 Score=103.14 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhh----cccccccccccchhhhcc-----CCCCcCC-CCCHHHHHHHHHHHhh
Q 025221 11 GPWTEQEDILLVNFVQLFGDRRWDFIAKV----SGLNRTGKSCRLRWVNYL-----HPGLKRG-KMTPQEERLVLELHAK 80 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~~~W~~IA~~----lgp~Rt~~qcr~Rw~~~L-----~p~l~k~-~WT~EED~~Ll~lv~~ 80 (256)
++||+|||+.|+++|++||.++|..|++. + ++||+.+|++||+++| +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~-~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNA-DHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTC-TTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhcccc-CCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998899999985 7 6999999999999998 6776665 5677777888888764
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=2.6e-13 Score=95.64 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=46.8
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCCcccccc---ccCCCCCHHHHHHHHHHHhHH
Q 025221 61 LKRGKMTPQEERLVLELHAKWGNRWSRIA---RKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 61 l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia---~~l~gRt~~~~knrw~~~lrk 110 (256)
.++.+||+|||+.|+++|++||.+|..|+ .+|+|||..+||+||++++|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46889999999999999999999999999 578999999999999999875
No 44
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.37 E-value=6.6e-13 Score=99.37 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHhhcCC-cccccccc----CCCCCHHHHHHHHHHHhHHHH
Q 025221 64 GKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 64 ~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRt~~~~knrw~~~lrk~~ 112 (256)
.+||+|||++|+++|++||. +|+.|++. |+|||+++||+||++++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999998 99999995 899999999999999998764
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=101.08 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=45.3
Q ss_pred CCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHH
Q 025221 60 GLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTH 107 (256)
Q Consensus 60 ~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~ 107 (256)
...+++||+|||++|+++|++||.+|.+||++|++||..||++||.++
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999866
No 46
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.36 E-value=2.8e-13 Score=104.86 Aligned_cols=55 Identities=31% Similarity=0.545 Sum_probs=51.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCC
Q 025221 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59 (256)
Q Consensus 3 ~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p 59 (256)
+++|.+++|+||+|||++|+.+|..|| .+|..||+.| |+||+.||+.||..+|..
T Consensus 49 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l-~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 49 HLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLL-PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp TTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTC-TTCCHHHHHHHHHHHTC-
T ss_pred ccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHc-CCCCHHHHHHHHHHHHhc
Confidence 578999999999999999999999999 5899999999 699999999999998865
No 47
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.36 E-value=3.5e-13 Score=99.99 Aligned_cols=50 Identities=26% Similarity=0.597 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhcc
Q 025221 6 EEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L 57 (256)
....+++||+|||++|+++|++|| .+|..||++|+ +||+.||+.||.++.
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRLP 63 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTSC
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 456789999999999999999999 89999999995 999999999999983
No 48
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.02 E-value=9.6e-14 Score=105.17 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=50.1
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCC
Q 025221 4 QQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59 (256)
Q Consensus 4 l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p 59 (256)
..|.+++|+||+|||++|+++|..||. +|..||+.| ++||+.||+.||.++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l-~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMV-GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 567899999999999999999999995 899999999 599999999999998863
No 49
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.33 E-value=9.3e-13 Score=105.44 Aligned_cols=52 Identities=25% Similarity=0.576 Sum_probs=48.7
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lr 109 (256)
.+..++++||+|||++|+++|.+||.+|..||..|+|||..||+.||+++|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4567899999999999999999999999999999999999999999999884
No 50
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.32 E-value=1.2e-12 Score=104.34 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=50.9
Q ss_pred cCCCCcCCCCCHHHHHHHHHHHhhcCC-cccccccc----CCCCCHHHHHHHHHHHhHHH
Q 025221 57 LHPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 57 L~p~l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRt~~~~knrw~~~lrk~ 111 (256)
+.+..++++||+|||++|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 556788999999999999999999998 99999998 48999999999999999864
No 51
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.31 E-value=6.2e-13 Score=103.52 Aligned_cols=55 Identities=29% Similarity=0.587 Sum_probs=51.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCC
Q 025221 3 VQQEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59 (256)
Q Consensus 3 ~l~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p 59 (256)
+|+|.+++|+||+|||++|+.+|..|| .+|..||+.| |+||+.||+.||..++..
T Consensus 46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l-~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 46 YINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFL-KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHH-SSSCHHHHHHHHHHHHHH
T ss_pred HHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHC-CCCCHHHHHHHHHHHHhh
Confidence 478999999999999999999999999 5899999999 699999999999987754
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.31 E-value=1.6e-12 Score=101.29 Aligned_cols=53 Identities=21% Similarity=0.344 Sum_probs=48.7
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCC-ccccccccC----CCCCHHHHHHHHHHHhHHH
Q 025221 59 PGLKRGKMTPQEERLVLELHAKWGN-RWSRIARKL----PGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 59 p~l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l----~gRt~~~~knrw~~~lrk~ 111 (256)
+..++++||+|||++|+++|++||. +|+.|++.+ +|||+.+||+||+++++..
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4568899999999999999999998 999999965 8999999999999999863
No 53
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.31 E-value=4.2e-13 Score=98.11 Aligned_cols=53 Identities=23% Similarity=0.465 Sum_probs=47.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CCCchhhhhhcccccccccccchhhhccC
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFG---DRRWDFIAKVSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g---~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
.+...+++||+|||++|+.+|+.|| ..+|..||++| |+||..||+.||.+++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v-pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV-PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC-SSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999998 35899999999 69999999999998775
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.29 E-value=1.2e-12 Score=114.76 Aligned_cols=54 Identities=24% Similarity=0.503 Sum_probs=47.8
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCCc------cccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 59 PGLKRGKMTPQEERLVLELHAKWGNR------WSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 59 p~l~k~~WT~EED~~Ll~lv~~~G~~------W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
+.+++++||+|||++|+++|.++|++ |..||++|+|||+++||+||+.+|+++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhc
Confidence 35788999999999999999999985 9999999999999999999999998864
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.26 E-value=6.2e-12 Score=95.95 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=46.9
Q ss_pred cCCCCCHHHHHHHHHHHhhcC----CccccccccCCCCCHHHHHHHHHHHhHHHHH
Q 025221 62 KRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~~ 113 (256)
.+++||.|||++|++++..|| ++|.+||..|||||.++|++||+.+++....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ 62 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999999996 6899999999999999999999999877543
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.23 E-value=7.2e-12 Score=99.94 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=49.0
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcCC-cccccccc----CCCCCHHHHHHHHHHHhHHH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~----l~gRt~~~~knrw~~~lrk~ 111 (256)
....++++||+|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 34567899999999999999999998 99999996 48999999999999999875
No 57
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.06 E-value=3.6e-11 Score=91.72 Aligned_cols=48 Identities=17% Similarity=0.421 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCchhhhhhcccccccccccchhhhcc
Q 025221 9 RKGPWTEQEDILLVNFVQLFG---DRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g---~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L 57 (256)
.++.||+|||++|.+++..|+ ..+|..||+.| |+||..+|+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~v-pGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHS-TTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 478999999999999999997 45799999999 6999999999999865
No 58
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.03 E-value=2.4e-10 Score=87.00 Aligned_cols=67 Identities=19% Similarity=0.261 Sum_probs=60.7
Q ss_pred ccccccchhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCccccccccC-----CCCCHHHHHHHHHHHhHHHHHhh
Q 025221 45 TGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKL-----PGRTDNEIKNYWRTHMRKKAQER 115 (256)
Q Consensus 45 t~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l-----~gRt~~~~knrw~~~lrk~~~~~ 115 (256)
...=+.++|.++|.+ .+||.||+..|++|+++||.+|..|+..+ ++||..+||+||..+.++....+
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345678899999976 89999999999999999999999999999 58999999999999999887765
No 59
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=80.18 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=43.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHh
Q 025221 62 KRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHM 108 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~l 108 (256)
..++||+||++++++++..||.+|..||..|+|||..+|+++|....
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 45789999999999999999999999999999999999999997644
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.89 E-value=1.3e-09 Score=79.32 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=45.0
Q ss_pred CCcCCCCCHHHHHHHHHHHhhcC----CccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 60 GLKRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 60 ~l~k~~WT~EED~~Ll~lv~~~G----~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
..+.+.||.||+++|.+++..|+ .+|.+||..| |||..+|++||+.+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34677899999999999999997 5899999998 99999999999988654
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=2.4e-09 Score=75.22 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhcc
Q 025221 6 EEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L 57 (256)
.....++||+||++++.+++..|| .+|..||+.| |+|+..||+++|....
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l-~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYL-ERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHC-TTSCHHHHHHHHHHHT
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHc-CCCCHHHHHHHHHHhc
Confidence 345678999999999999999999 6999999999 6999999999987644
No 62
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.81 E-value=2.9e-09 Score=92.62 Aligned_cols=50 Identities=18% Similarity=0.348 Sum_probs=46.8
Q ss_pred CcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 61 LKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 61 l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
...++||+||++++++++.+||++|..||+.|++||.+|||++|....++
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999988876
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.80 E-value=2.1e-09 Score=75.74 Aligned_cols=49 Identities=16% Similarity=0.290 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhh---hhcccccccccccchhhhccC
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIA---KVSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA---~~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
.++++||+|||+.|++.|++||. +|..|+ .++ ++||..++++||++...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~-~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQ-KGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCC-TTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCc-cCcccchHHHHHHHHHh
Confidence 47899999999999999999996 999999 466 59999999999998764
No 64
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.73 E-value=3.6e-09 Score=76.94 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=44.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCCchhhhhhcccccccccccchhhhccC
Q 025221 6 EEVRKGPWTEQEDILLVNFVQLFG---DRRWDFIAKVSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~~lv~~~g---~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
...+++.||.|||++|.+++..|+ ..+|..||+.+| ||..+|+.||..+..
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 345788999999999999999997 457999999985 999999999987654
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.56 E-value=2.2e-08 Score=95.95 Aligned_cols=47 Identities=19% Similarity=0.403 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 64 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 64 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
.+||.||.+++++++.+||.+|..||..++.||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999765543
No 66
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.55 E-value=5.9e-08 Score=70.63 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=44.0
Q ss_pred cCCCCCHHHHHHHHHHHhhcCC----ccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 62 KRGKMTPQEERLVLELHAKWGN----RWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
....||.+|+++|.+++..|+. +|.+||..++|||..+|+.||..+++.
T Consensus 7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3467999999999999999984 799999999999999999999988554
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.48 E-value=4.4e-08 Score=68.48 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCchhhhh-hcccccccccccchhhhccC
Q 025221 10 KGPWTEQEDILLVNFVQLF--------GDRRWDFIAK-VSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 10 kg~WT~EED~~L~~lv~~~--------g~~~W~~IA~-~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
+.+||+|||+.|+++|.++ |..-|..+|+ .+ |++|-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~-~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSL-TQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCS-SSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHC-CCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 4445999999 78 79999999999999884
No 68
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=1.8e-07 Score=68.10 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCchhhhhhcccccccccccchhhhccCC
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGD---RRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~---~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p 59 (256)
.....||.+|+++|..++..|+. .+|..||..+ ++||..+|+.||...+..
T Consensus 6 ~~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V-~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAV-GSRSPEECQRKYMENPRG 59 (73)
T ss_dssp CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHT-TTSCHHHHHHHHHHSSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHc-CCCCHHHHHHHHHHHHhc
Confidence 34568999999999999999974 4799999999 499999999999987643
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.39 E-value=1.4e-07 Score=82.07 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccC
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
...++||+||++++++++.+|| ++|..||+.|+ +||..||+.+|.++..
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 4567999999999999999999 68999999995 9999999999998774
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.36 E-value=2.9e-07 Score=64.26 Aligned_cols=47 Identities=21% Similarity=0.408 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhc--------CC-ccccccc-cCCCCCHHHHHHHHHHHhH
Q 025221 63 RGKMTPQEERLVLELHAKW--------GN-RWSRIAR-KLPGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~--------G~-~W~~Ia~-~l~gRt~~~~knrw~~~lr 109 (256)
+.+||+|||+.|++.|.++ |+ -|.+|++ .++++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 65 5999999 7999999999999998764
No 71
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.19 E-value=4.9e-07 Score=65.51 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----ccccccccCCCCCHHHHHHHHH
Q 025221 63 RGKMTPQEERLVLELHAKWGN----RWSRIARKLPGRTDNEIKNYWR 105 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~gRt~~~~knrw~ 105 (256)
...||.+|+++|.+++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 8999999999999999999874
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.19 E-value=2.2e-06 Score=60.39 Aligned_cols=47 Identities=17% Similarity=0.293 Sum_probs=43.6
Q ss_pred CCCcCCCCCHHHHHHHHHHHhhcCCccccccc-cCCCCCHHHHHHHHH
Q 025221 59 PGLKRGKMTPQEERLVLELHAKWGNRWSRIAR-KLPGRTDNEIKNYWR 105 (256)
Q Consensus 59 p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~-~l~gRt~~~~knrw~ 105 (256)
|.+....||+||.++..+.+.+||.+|..|++ .|++||..+|...|.
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 56778899999999999999999999999999 589999999998875
No 73
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.14 E-value=2.5e-06 Score=64.08 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---ccccccccCCCCCHHHHHHHHHHHhHHHHH
Q 025221 65 KMTPQEERLVLELHAKWGN---RWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G~---~W~~Ia~~l~gRt~~~~knrw~~~lrk~~~ 113 (256)
-||.|||+.||...++-|. .|..||+.|.+|+.+||++|++.|++-..+
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 5999999999999999997 899999999999999999999999987644
No 74
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.38 E-value=3.9e-07 Score=64.90 Aligned_cols=46 Identities=22% Similarity=0.350 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHhhcCC---ccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 65 KMTPQEERLVLELHAKWGN---RWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G~---~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
-||.|||+.||..+++-|. .|..||..| ||+++||++|+..+++--
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 4999999999999999998 899999999 999999999999998754
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.04 E-value=5.9e-06 Score=62.57 Aligned_cols=61 Identities=21% Similarity=0.313 Sum_probs=52.9
Q ss_pred chhhhccCCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCC-----CCCHHHHHHHHHHHhHHHHHhh
Q 025221 51 LRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLP-----GRTDNEIKNYWRTHMRKKAQER 115 (256)
Q Consensus 51 ~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~-----gRt~~~~knrw~~~lrk~~~~~ 115 (256)
+.|..+|. ...||.||...|++|+++|+-+|..|+..+. +||..++|+||..+.++....+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 45666664 3689999999999999999999999999873 7999999999999999877655
No 76
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.03 E-value=8e-07 Score=64.38 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCchhhhhhcccccccccccchhh
Q 025221 9 RKGPWTEQEDILLVNFVQLFGD---RRWDFIAKVSGLNRTGKSCRLRWV 54 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g~---~~W~~IA~~lgp~Rt~~qcr~Rw~ 54 (256)
..+.||.||+++|..++..|.. .+|.+||+.| ||||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~V-pGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYV-KGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGS-CSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHc-CCCCHHHHHHHHH
Confidence 3568999999999999999964 3899999999 5999999999985
No 77
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.02 E-value=9.3e-06 Score=73.80 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccc-------hhhh-----------------------c----
Q 025221 11 GPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRL-------RWVN-----------------------Y---- 56 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~-------Rw~~-----------------------~---- 56 (256)
+.||..+...++.++.+||..+|..||..|+ +++...++. ||.. .
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999989999999995 788775522 1100 0
Q ss_pred ---------------c-CCCCcCCCCCHHHHHHHHHHHhhcCC----ccccccc------------cCCCCCHHHHHHHH
Q 025221 57 ---------------L-HPGLKRGKMTPQEERLVLELHAKWGN----RWSRIAR------------KLPGRTDNEIKNYW 104 (256)
Q Consensus 57 ---------------L-~p~l~k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~------------~l~gRt~~~~knrw 104 (256)
+ .+..+...||++||+.||-.+.+||- .|..|.. +|..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 12234567999999999999999995 6999962 45789999999999
Q ss_pred HHHhHHHH
Q 025221 105 RTHMRKKA 112 (256)
Q Consensus 105 ~~~lrk~~ 112 (256)
.+|++-..
T Consensus 270 ~tLi~~ie 277 (304)
T 1ofc_X 270 NTLITLIE 277 (304)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998643
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.88 E-value=9.1e-06 Score=57.23 Aligned_cols=49 Identities=18% Similarity=0.160 Sum_probs=43.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCchhhhh-hcccccccccccchhhh
Q 025221 5 QEEVRKGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVN 55 (256)
Q Consensus 5 ~~~~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~-~lgp~Rt~~qcr~Rw~~ 55 (256)
.|.+....||+||-+++.+++.+|| .+|..|++ .| ++|+..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELL-PNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSC-TTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCcHHHHHHHHhc
Confidence 4678889999999999999999999 58999998 58 59999999887753
No 79
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.68 E-value=5e-05 Score=54.52 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccccccc-cCCCCCHHHHHHHHH
Q 025221 63 RGKMTPQEERLVLELHAKWGNRWSRIAR-KLPGRTDNEIKNYWR 105 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~-~l~gRt~~~~knrw~ 105 (256)
...||+||.++..+.+..||.+|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999886
No 80
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.63 E-value=5.1e-05 Score=57.57 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHH
Q 025221 63 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRT 106 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~ 106 (256)
...||+||.+++.+.+..||.+|..|+..|++||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 45799999999999999999999999999999999999988754
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.62 E-value=2.5e-05 Score=74.87 Aligned_cols=48 Identities=29% Similarity=0.538 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhcc
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L 57 (256)
....+||.||-+++++++.+|| .+|..||+++| +|+..||+..|.++-
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3468999999999999999999 69999999997 999999999987654
No 82
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.49 E-value=5.4e-05 Score=57.36 Aligned_cols=50 Identities=18% Similarity=0.291 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcc----cccccccccchhhhccC
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSG----LNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lg----p~Rt~~qcr~Rw~~~L~ 58 (256)
++.+.||.||+..|.+|+++|+ .+|..|+..+. ++||..++++||.....
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 3448999999999999999999 68999998883 37999999999987653
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.31 E-value=0.00012 Score=52.46 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=39.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhhh-hcccccccccccchhhh
Q 025221 9 RKGPWTEQEDILLVNFVQLFGDRRWDFIAK-VSGLNRTGKSCRLRWVN 55 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g~~~W~~IA~-~lgp~Rt~~qcr~Rw~~ 55 (256)
....||+||-+++.+++..|| .+|..|++ .| ++|+..+|...|..
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v-~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFL-PWKSLTSIIEYYYM 52 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTC-SSSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHc-CCCCHHHHHHHHHh
Confidence 456899999999999999999 58999999 58 69999999887753
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.27 E-value=0.00013 Score=55.26 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhh
Q 025221 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVN 55 (256)
Q Consensus 10 kg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~ 55 (256)
...||+||.+++.+.+..|| .+|..||+.| ++|+..+|.+.|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l-~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFL-ERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTC-TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHc-CCCCHHHHHHHHhc
Confidence 46799999999999999999 6899999999 69999999987753
No 85
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.24 E-value=0.00013 Score=53.95 Aligned_cols=51 Identities=16% Similarity=0.381 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHhhcCC----------ccccccccCC----CCCHHHHHHHHHHHhHHHHH
Q 025221 63 RGKMTPQEERLVLELHAKWGN----------RWSRIARKLP----GRTDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~----------~W~~Ia~~l~----gRt~~~~knrw~~~lrk~~~ 113 (256)
...||.+|-.+||+++.++.. .|..||..|. .||+.||+++|.+|.+.-.+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 457999999999999976431 5999999862 59999999999999987544
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.10 E-value=9.5e-05 Score=54.71 Aligned_cols=50 Identities=26% Similarity=0.573 Sum_probs=40.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---------CCchhhhhhc---ccccccccccchhhhcc
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGD---------RRWDFIAKVS---GLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~---------~~W~~IA~~l---gp~Rt~~qcr~Rw~~~L 57 (256)
.+...||.+|-..|+.+...... .-|..||..| |-.|++.||+.+|.+..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788999999999999876421 1499999765 45799999999998764
No 87
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.10 E-value=0.00021 Score=53.60 Aligned_cols=46 Identities=22% Similarity=0.404 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCchhhhhhcccccccccccchhhhcc
Q 025221 11 GPWTEQEDILLVNFVQLFGD--RRWDFIAKVSGLNRTGKSCRLRWVNYL 57 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~--~~W~~IA~~lgp~Rt~~qcr~Rw~~~L 57 (256)
-.||.|||..|+...++.|. ..|..||+.|| +|+..|+++||+..+
T Consensus 34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM 81 (95)
T ss_dssp SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred EEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence 35999999999999999874 37999999997 999999999998643
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.92 E-value=0.0017 Score=55.20 Aligned_cols=47 Identities=11% Similarity=0.166 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhhcC-Ccccccccc--C------------CCCCHHHHHHHHHHHhHHH
Q 025221 65 KMTPQEERLVLELHAKWG-NRWSRIARK--L------------PGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G-~~W~~Ia~~--l------------~gRt~~~~knrw~~~lrk~ 111 (256)
.||.+||..||..+.+|| .+|..|..- | ..++...+..|-..+|+--
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 599999999999999999 699888542 1 1245667999988777643
No 89
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.88 E-value=0.0029 Score=58.86 Aligned_cols=104 Identities=18% Similarity=0.278 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccc----------------------------------------
Q 025221 11 GPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCR---------------------------------------- 50 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr---------------------------------------- 50 (256)
+.||.-+=..++.++.+||..+-..||..|+++++...++
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999999999999999888999999995466666442
Q ss_pred --------chhhhc-cC--CC-CcCCCCCHHHHHHHHHHHhhcCC----cccccccc------------CCCCCHHHHHH
Q 025221 51 --------LRWVNY-LH--PG-LKRGKMTPQEERLVLELHAKWGN----RWSRIARK------------LPGRTDNEIKN 102 (256)
Q Consensus 51 --------~Rw~~~-L~--p~-l~k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~------------l~gRt~~~~kn 102 (256)
.-|.+. +. ++ .+...||++||+.||-++.+||- .|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 111110 00 11 13456999999999999999994 69888322 57899999999
Q ss_pred HHHHHhHHHHHh
Q 025221 103 YWRTHMRKKAQE 114 (256)
Q Consensus 103 rw~~~lrk~~~~ 114 (256)
|..+|++-..+.
T Consensus 284 Rc~tLi~~IeKE 295 (374)
T 2y9y_A 284 RGNTLLQCLEKE 295 (374)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 999999876544
No 90
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.85 E-value=0.00019 Score=51.10 Aligned_cols=46 Identities=15% Similarity=0.316 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC--CCchhhhhhcccccccccccchhhhccC
Q 025221 11 GPWTEQEDILLVNFVQLFGD--RRWDFIAKVSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~--~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
-.||.|||..|+...++.|. ..|..||+.+ +|++.|+.+||+..+.
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 35999999999999999885 3799999998 5999999999987653
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=95.40 E-value=0.0096 Score=44.89 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=41.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcc----cccccccccchhhhcc
Q 025221 8 VRKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSG----LNRTGKSCRLRWVNYL 57 (256)
Q Consensus 8 ~kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lg----p~Rt~~qcr~Rw~~~L 57 (256)
++...||.||...|..|+++|. .+|-.|+.... ..|+..+.++||....
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 3457899999999999999999 68999997663 2689999999998764
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.55 E-value=0.063 Score=37.69 Aligned_cols=48 Identities=13% Similarity=0.012 Sum_probs=39.6
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCc---cccccccC--CCCCHHHHHHHHHHHhH
Q 025221 62 KRGKMTPQEERLVLELHAKWGNR---WSRIARKL--PGRTDNEIKNYWRTHMR 109 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G~~---W~~Ia~~l--~gRt~~~~knrw~~~lr 109 (256)
.+-.||+|..+.++++|.++|.. +..|-+.| +|.|..+|+.+...+..
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45679999999999999999964 67887765 78999999998765543
No 93
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.89 E-value=0.1 Score=36.64 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC--Cchhhhhhcc-cccccccccchhhhc
Q 025221 6 EEVRKGPWTEQEDILLVNFVQLFGDR--RWDFIAKVSG-LNRTGKSCRLRWVNY 56 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~~lv~~~g~~--~W~~IA~~lg-p~Rt~~qcr~Rw~~~ 56 (256)
+...+-.||+|..++++.+|+..|.. .+..|.+.|+ ++.|..+++-+.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 34567789999999999999999933 2678888775 356777776665544
No 94
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.71 E-value=0.15 Score=46.15 Aligned_cols=46 Identities=20% Similarity=0.314 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHh
Q 025221 63 RGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHM 108 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~l 108 (256)
-+.||..+...++.+..+||. +|..||..++|+|...|+.+.....
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 347999999999999999997 8999999999999999988765444
No 95
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.03 E-value=0.28 Score=41.24 Aligned_cols=50 Identities=18% Similarity=0.251 Sum_probs=42.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcC---Ccccccccc--CCCCCHHHHHHHHHHHhHHH
Q 025221 62 KRGKMTPQEERLVLELHAKWG---NRWSRIARK--LPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G---~~W~~Ia~~--l~gRt~~~~knrw~~~lrk~ 111 (256)
....||+.|-+.|+.++.+|| .+|..|+.. |.+||...|+..+..++..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 446799999999999999999 489999864 78999999999887777654
No 96
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.04 E-value=0.19 Score=44.75 Aligned_cols=28 Identities=32% Similarity=0.505 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhh
Q 025221 11 GPWTEQEDILLVNFVQLFGDRRWDFIAK 38 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~~~W~~IA~ 38 (256)
..|+.+||..|+..|.+||.++|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 3599999999999999999999999974
No 97
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=79.19 E-value=2 Score=39.86 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCchhhhhhc
Q 025221 9 RKGPWTEQEDILLVNFVQLFGD---RRWDFIAKVS 40 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g~---~~W~~IA~~l 40 (256)
++..||.+||..|+.++.+||. ++|+.|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 5667999999999999999998 8999997655
No 98
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=75.52 E-value=4.7 Score=35.68 Aligned_cols=48 Identities=19% Similarity=0.280 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCC---cccccccc--CCCCCHHHHHHHHHHHhHH
Q 025221 63 RGKMTPQEERLVLELHAKWGN---RWSRIARK--LPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~---~W~~Ia~~--l~gRt~~~~knrw~~~lrk 110 (256)
+++||+-|-+.|++.+.+||. +|..|+.. |+.|+...++.-+..++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 578999999999999999994 89999764 7899999999988877764
No 99
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=71.20 E-value=1.9 Score=33.65 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=32.7
Q ss_pred CCchhhhhhccccccc----ccccchhhhccCCCCcCCCCCHHHHHHHHHHHh
Q 025221 31 RRWDFIAKVSGLNRTG----KSCRLRWVNYLHPGLKRGKMTPQEERLVLELHA 79 (256)
Q Consensus 31 ~~W~~IA~~lgp~Rt~----~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~lv~ 79 (256)
+.|..||..||...+. ...+..|.++|.+- ...+++|-..|.+-|.
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 4699999999854433 35678888888652 2377788888776653
No 100
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=70.45 E-value=1.6 Score=33.47 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=29.6
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccccccccchhhhccCC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRTGKSCRLRWVNYLHP 59 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p 59 (256)
+|..+|.+.| .+.|..||..+|... +...+..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 4666777776 347999999998544 78888889888864
No 101
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=65.77 E-value=2.8 Score=31.57 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=28.8
Q ss_pred HHHHHHHHhC-------CCCchhhhhhccccc----ccccccchhhhccCC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNR----TGKSCRLRWVNYLHP 59 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~R----t~~qcr~Rw~~~L~p 59 (256)
+|..+|.+.| .+.|..||..||... .+.+.+..|.++|.+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4666777765 247999999998433 235778888888865
No 102
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=64.89 E-value=5.2 Score=26.48 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 69 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 69 EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+.++.++.++-..|-.+.+||..+ |-+...|+++....+++-
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455566666667788999999999 999999999877666553
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=62.80 E-value=2.4 Score=32.57 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=28.0
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc---cccccchhhhccCC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT---GKSCRLRWVNYLHP 59 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt---~~qcr~Rw~~~L~p 59 (256)
+|..+|.+.| .+.|..||..||...+ +.+.+..|.++|.|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 5777787776 3479999999985432 34567778777753
No 104
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=62.35 E-value=6.2 Score=26.85 Aligned_cols=45 Identities=18% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhh----cCCccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 66 MTPQEERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 66 WT~EED~~Ll~lv~~----~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
.++. ++.++.+.-. .|-.+.+||..+ |-+...|+.+-...+++-.
T Consensus 11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 3444 4445555443 577999999999 9999999998877776644
No 105
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=60.07 E-value=45 Score=24.66 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCC------CCcCCCCCHHHHHHHHHHHhhcC
Q 025221 9 RKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHP------GLKRGKMTPQEERLVLELHAKWG 82 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p------~l~k~~WT~EED~~Ll~lv~~~G 82 (256)
+....|.++-..++.++. -| ..-..||+.+| .+...++ ||.+.... .......+++++..|+++...-+
T Consensus 3 r~~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~ 77 (141)
T 1u78_A 3 RGSALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSC 77 (141)
T ss_dssp CSCCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCC
T ss_pred CcccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCC
Confidence 446788998888888774 45 46789999997 4444443 33332211 11223478888888888733222
Q ss_pred CccccccccCCC--CCHHHHHHHH
Q 025221 83 NRWSRIARKLPG--RTDNEIKNYW 104 (256)
Q Consensus 83 ~~W~~Ia~~l~g--Rt~~~~knrw 104 (256)
-.-.+|+..| | -+...|.+..
T Consensus 78 ~s~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 78 KTARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp CCHHHHHHHT-TCCSCHHHHHHHH
T ss_pred CCHHHHHHHH-CCCccHHHHHHHH
Confidence 2346788887 5 5666676544
No 106
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=57.98 E-value=6.2 Score=26.44 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=30.5
Q ss_pred HHHHHHHHHh----hcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 70 EERLVLELHA----KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 70 ED~~Ll~lv~----~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
.++.++.++- ..|-.+.+||..+ |-+...|+.+....+++-
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 4444555544 3577999999999 999999999877766653
No 107
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=56.14 E-value=7.7 Score=31.89 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCCCCchhhhh
Q 025221 6 EEVRKGPWTEQEDILLV--------NFVQLFGDRRWDFIAK 38 (256)
Q Consensus 6 ~~~kkg~WT~EED~~L~--------~lv~~~g~~~W~~IA~ 38 (256)
|....|-||+|.|+.|. +++++|| |..|..
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG---~erie~ 147 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHG---TGRMEM 147 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHC---HHHHHH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 56788999999999875 5778887 555553
No 108
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=54.38 E-value=3 Score=32.50 Aligned_cols=40 Identities=30% Similarity=0.431 Sum_probs=27.7
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc----cccccchhhhccCC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT----GKSCRLRWVNYLHP 59 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt----~~qcr~Rw~~~L~p 59 (256)
+|..+|.+.| .+.|..||..||...+ +...+..|.++|.|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4666777776 1379999999984433 34567778888754
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=54.07 E-value=4.3 Score=31.42 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=26.1
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc---cccccchhhhccC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT---GKSCRLRWVNYLH 58 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt---~~qcr~Rw~~~L~ 58 (256)
+|..+|.+.| .+.|..||..||...+ +...+..|.++|.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 5667777776 3479999999984332 2355666776664
No 110
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=53.32 E-value=3 Score=30.64 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=25.5
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc---cccccchhhhccC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT---GKSCRLRWVNYLH 58 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt---~~qcr~Rw~~~L~ 58 (256)
+|..+|.+.| .+.|..||..+|...+ +.+.+..|.++|.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 4566666664 2479999999974332 3356677777764
No 111
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=52.88 E-value=38 Score=25.76 Aligned_cols=93 Identities=16% Similarity=0.129 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhc------cCCCCc----CCCCCHHHHHHHHHHHh
Q 025221 10 KGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNY------LHPGLK----RGKMTPQEERLVLELHA 79 (256)
Q Consensus 10 kg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~------L~p~l~----k~~WT~EED~~Ll~lv~ 79 (256)
....|.++-..++.++. .| ..-..||+.+| .+...++ ||.+. +.+... ....++++.+.|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34689999888888884 45 46789999997 4433333 33332 222111 23478888888888887
Q ss_pred hcCC-ccccccccC-------CC--CCHHHHHHHHHHH
Q 025221 80 KWGN-RWSRIARKL-------PG--RTDNEIKNYWRTH 107 (256)
Q Consensus 80 ~~G~-~W~~Ia~~l-------~g--Rt~~~~knrw~~~ 107 (256)
+... .-.+|+..| .| -+...|.+..+..
T Consensus 105 ~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 105 QNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp HCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred hCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 6432 223455444 02 4556665544433
No 112
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.27 E-value=14 Score=26.21 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 69 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 69 EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+.++.++.++-..|-.-.+||..| |-+...|+.+....+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345556666666788889999999 999999999887766654
No 113
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=50.85 E-value=3.3 Score=31.08 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=26.0
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc---cccccchhhhccC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT---GKSCRLRWVNYLH 58 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt---~~qcr~Rw~~~L~ 58 (256)
+|..+|.+.| .+.|..||..+|...+ +.+.+..|.++|.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 4666777766 2369999999984332 3456667777664
No 114
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=48.98 E-value=22 Score=27.75 Aligned_cols=31 Identities=16% Similarity=0.051 Sum_probs=25.5
Q ss_pred hcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 80 KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 80 ~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
..|-...+||..| |-+...|+++....+++-
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3466889999999 999999999887776654
No 115
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=48.91 E-value=6 Score=30.63 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=26.7
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc---cccccchhhhccC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT---GKSCRLRWVNYLH 58 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt---~~qcr~Rw~~~L~ 58 (256)
+|..+|.+.| .+.|..||..+|...+ +.+.+..|.++|.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 4666777765 2379999999985432 3466777777774
No 116
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=47.00 E-value=8.8 Score=29.26 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=30.4
Q ss_pred HHHHHHhhcC--------CccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 73 LVLELHAKWG--------NRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 73 ~Ll~lv~~~G--------~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
.|..+|.+.| +.|..||..|.--....+|..|..+|-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 4777788887 37999999984444789999998888653
No 117
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=46.31 E-value=15 Score=28.94 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 69 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 69 EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
+-|..|+++.++.|. .+.+||+.+ |=|...|+.|.+.+.....
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 467888888888876 899999999 9999999999988877653
No 118
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=45.94 E-value=26 Score=23.60 Aligned_cols=42 Identities=17% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 66 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 66 WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
.|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455554444 445 5677888999999 88999999988777665
No 119
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.36 E-value=64 Score=24.82 Aligned_cols=77 Identities=16% Similarity=0.095 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhcc------CCCCc----CCCCCHHHHHHHHHHHhh
Q 025221 11 GPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYL------HPGLK----RGKMTPQEERLVLELHAK 80 (256)
Q Consensus 11 g~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L------~p~l~----k~~WT~EED~~Ll~lv~~ 80 (256)
.+.|.++-..++.++. .| ..-..||+.+| .+...+ .||.+.. .+... ....++++.+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV-~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCV-SKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHH-HHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHH-HHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689999888888884 46 46889999997 443333 3344332 22111 234788888888888765
Q ss_pred cCC-ccccccccC
Q 025221 81 WGN-RWSRIARKL 92 (256)
Q Consensus 81 ~G~-~W~~Ia~~l 92 (256)
... .-.+|+..|
T Consensus 99 ~~~~s~~~i~~~l 111 (159)
T 2k27_A 99 NPTMFAWEIRDRL 111 (159)
T ss_dssp CSSSCHHHHHHHH
T ss_pred CccchHHHHHHHH
Confidence 432 223444444
No 120
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=45.07 E-value=12 Score=29.77 Aligned_cols=54 Identities=30% Similarity=0.430 Sum_probs=34.0
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccc----cccccchhhhccCC--CCcCCCCCHHHHHH
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRT----GKSCRLRWVNYLHP--GLKRGKMTPQEERL 73 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt----~~qcr~Rw~~~L~p--~l~k~~WT~EED~~ 73 (256)
+|..+|.+.| .+.|..||..||...+ +.+.+..|.++|.| ...+|.=.++|-+.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~ 134 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQA 134 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 4666777765 2479999999985432 34678888888865 22334444444433
No 121
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=44.24 E-value=27 Score=25.02 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=36.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 62 KRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...+++|-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34468888877766555 677888999999 999999999998887763
No 122
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.66 E-value=23 Score=24.61 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 65 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+++-...+++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467776665554 4 5777889999999 89999999988777665
No 123
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=42.49 E-value=45 Score=25.51 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=31.1
Q ss_pred HHHHHHhhcC--------CccccccccCCCCC----HHHHHHHHHHHhHHHHHh
Q 025221 73 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKAQE 114 (256)
Q Consensus 73 ~Ll~lv~~~G--------~~W~~Ia~~l~gRt----~~~~knrw~~~lrk~~~~ 114 (256)
.|..+|.+.| +.|.+||..|.--+ ...+|+.|.++|-.--..
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5677778877 47999999983322 468899999988875444
No 124
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=42.11 E-value=24 Score=25.29 Aligned_cols=44 Identities=25% Similarity=0.217 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 65 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+-...+++-
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 466666665555 4 6777888999999 999999999887777664
No 125
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=41.95 E-value=21 Score=26.51 Aligned_cols=39 Identities=10% Similarity=0.314 Sum_probs=28.8
Q ss_pred HHHHHHhhcC--------CccccccccCCCCC----HHHHHHHHHHHhHHH
Q 025221 73 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKK 111 (256)
Q Consensus 73 ~Ll~lv~~~G--------~~W~~Ia~~l~gRt----~~~~knrw~~~lrk~ 111 (256)
.|..+|.+.| +.|.+||..|.--. ...+|..|..+|-.-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 5677777777 47999999983322 468899888887654
No 126
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=41.67 E-value=18 Score=27.59 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=30.1
Q ss_pred HHHHHHhhcC--------CccccccccCCCCC----HHHHHHHHHHHhHHHH
Q 025221 73 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKA 112 (256)
Q Consensus 73 ~Ll~lv~~~G--------~~W~~Ia~~l~gRt----~~~~knrw~~~lrk~~ 112 (256)
.|..+|.+.| +.|.+|+..|.--. ...+|..|..+|-.--
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 5777788888 47999999983322 5688999998887643
No 127
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.28 E-value=2.4 Score=33.02 Aligned_cols=38 Identities=21% Similarity=0.377 Sum_probs=25.1
Q ss_pred HHHHHHHHhC-------CCCchhhhhhcccccccccccchhhhccC
Q 025221 20 LLVNFVQLFG-------DRRWDFIAKVSGLNRTGKSCRLRWVNYLH 58 (256)
Q Consensus 20 ~L~~lv~~~g-------~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~ 58 (256)
+|..+|.+.| .+.|..||..||... +...+..|.++|.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILL 96 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHH
Confidence 3555555554 235999999997444 6677777777764
No 128
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=41.15 E-value=12 Score=29.03 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.9
Q ss_pred HHHHHHhhcCC--------ccccccccCCCCCHHHHHHHHHHHhHHHHH
Q 025221 73 LVLELHAKWGN--------RWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 73 ~Ll~lv~~~G~--------~W~~Ia~~l~gRt~~~~knrw~~~lrk~~~ 113 (256)
.|..+|.+.|. .|.+|+..|.--....+|+.|.++|-.--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 46777777773 799999998444489999999999887544
No 129
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=40.92 E-value=27 Score=23.02 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 64 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 64 ~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
...|+.|-+.|.. + ..|..-.+||..+ |-+...|+.+...++++-
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3577777766655 4 5677888999999 889999999887776653
No 130
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.60 E-value=87 Score=23.79 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=30.4
Q ss_pred HHHHHHhhcC--------CccccccccCCCCC----HHHHHHHHHHHhHHHHH
Q 025221 73 LVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 73 ~Ll~lv~~~G--------~~W~~Ia~~l~gRt----~~~~knrw~~~lrk~~~ 113 (256)
.|..+|.+.| +.|.+|+..|.--. ...+|..|.++|-.--.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 5677788887 37999999983321 36889999988887544
No 131
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=39.23 E-value=23 Score=26.47 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 025221 66 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 102 (256)
Q Consensus 66 WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~kn 102 (256)
=+..-+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 13 GTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp CSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred hHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 367778888888999999999999999 777776654
No 132
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=39.10 E-value=9.6 Score=30.20 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCC
Q 025221 16 QEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGL 61 (256)
Q Consensus 16 EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l 61 (256)
+-|.+|+.++++.|.-.+..||+.+| -+...|+.|..+....++
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45888999999988789999999996 777788888777654443
No 133
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=38.88 E-value=33 Score=26.85 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=25.1
Q ss_pred hcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 80 KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 80 ~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
..|-...+||..| |-+...|+++....+++-
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3466889999999 999999999877766654
No 134
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=38.66 E-value=24 Score=24.74 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=29.9
Q ss_pred HHHHHHHHHhh----cCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 70 EERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 70 ED~~Ll~lv~~----~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
.++.++.+.-- .|-.+.+||..+ |-+...|+.+-...+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34444555443 567899999999 999999999877666553
No 135
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=37.79 E-value=33 Score=21.83 Aligned_cols=39 Identities=31% Similarity=0.253 Sum_probs=29.7
Q ss_pred HHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 71 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 71 D~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+..++.++ ..|-.-.+||..| |-+...|+.+....+++-
T Consensus 3 e~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKLI-DEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHHH-HTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 34455553 5577778999999 999999999888777664
No 136
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=35.89 E-value=20 Score=23.79 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhcccccc
Q 025221 16 QEDILLVNFVQLFGDRRWDFIAKVSGLNRT 45 (256)
Q Consensus 16 EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt 45 (256)
-|.+.|..++..++ ++....|+.+|-.|+
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 47778888888888 789999999985553
No 137
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=35.39 E-value=1.2e+02 Score=21.61 Aligned_cols=51 Identities=14% Similarity=0.106 Sum_probs=32.4
Q ss_pred cCCCCCHHHHHHHHHHHhhcCC----ccccccccCCC---------------CCHHHHHHHHHHHhHHHHHh
Q 025221 62 KRGKMTPQEERLVLELHAKWGN----RWSRIARKLPG---------------RTDNEIKNYWRTHMRKKAQE 114 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G~----~W~~Ia~~l~g---------------Rt~~~~knrw~~~lrk~~~~ 114 (256)
.+..||+++-..|...+..-.. .=..||..+ | -+..+|++-+.+ -|.+.++
T Consensus 10 ~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l-~~~~~~~~~~~~~~~~ls~~qV~~WFqN-RR~k~kr 79 (95)
T 2cuf_A 10 SRFTWRKECLAVMESYFNENQYPDEAKREEIANAC-NAVIQKPGKKLSDLERVTSLKVYNWFAN-RRKEIKR 79 (95)
T ss_dssp CSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHH-HHHHCCTTCCCCTTTCCCHHHHHHHHHH-HHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CchhhcccccccccCcCCHHHHHHHHHH-HHHHHHH
Confidence 4557999998888888876321 234566666 4 688888875444 4444333
No 138
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=35.15 E-value=30 Score=24.37 Aligned_cols=44 Identities=20% Similarity=0.091 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 65 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
..|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+-...+++-
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 356666555544 4 5677888999999 999999999887776653
No 139
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=34.59 E-value=43 Score=25.60 Aligned_cols=43 Identities=9% Similarity=0.111 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 69 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 69 EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
+-|..|+.++.+.|. .+.+||+.+ |=+...|..+.+.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 445667777777665 899999999 8899999999988877653
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.70 E-value=27 Score=26.49 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=25.0
Q ss_pred HHHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 025221 71 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 102 (256)
Q Consensus 71 D~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~kn 102 (256)
+..|..+....|..|..+|+.| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567777888999999999999 777776654
No 141
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.37 E-value=51 Score=24.49 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 70 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 70 ED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
.++.++.++-..|-...+||..+ |-+...|+.+-...+++-
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44556666667788889999999 999999998877666553
No 142
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=32.01 E-value=31 Score=26.21 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=27.3
Q ss_pred CCCCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 025221 58 HPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 102 (256)
Q Consensus 58 ~p~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~kn 102 (256)
.+.+-...=|.+ .|..+....|..|..+|+.| |=+..+|..
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 344444455555 45556788999999999998 766666543
No 143
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=30.62 E-value=37 Score=27.80 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=14.6
Q ss_pred CCCcCCCCCHHHHHHHH
Q 025221 59 PGLKRGKMTPQEERLVL 75 (256)
Q Consensus 59 p~l~k~~WT~EED~~Ll 75 (256)
|....|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 55678999999999987
No 144
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=30.45 E-value=44 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=24.7
Q ss_pred hcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 80 KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 80 ~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
..|-...+||..| |-+...|+++....+++-
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3466889999999 999999999877666553
No 145
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=29.77 E-value=33 Score=26.09 Aligned_cols=39 Identities=15% Similarity=0.356 Sum_probs=26.6
Q ss_pred CCcCCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 025221 60 GLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 102 (256)
Q Consensus 60 ~l~k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~kn 102 (256)
.+-...=|.+ .|..+....|..|..+|+.| |=+..+|..
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred hhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3334445555 45556788899999999998 766665543
No 146
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=29.07 E-value=56 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 72 RLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 72 ~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+.++.++-..|-...+||..| |-+...|+.+....+++-
T Consensus 193 r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 193 KLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 333444444567889999999 999999998876666553
No 147
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=28.71 E-value=29 Score=27.58 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=27.4
Q ss_pred hhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHHH
Q 025221 34 DFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLEL 77 (256)
Q Consensus 34 ~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~l 77 (256)
..||.++. |+|+.+||..+. + ...+|+||++.|++-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I-~nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------I-KNDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------C-CCCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHHh
Confidence 47888884 899999888652 2 336999999988763
No 148
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=28.52 E-value=42 Score=25.89 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 69 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 69 EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
++++.++.+....|-.-.+||..| |-+...|+++-..-+++-
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEI 137 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 445555666556677889999999 999999999877665554
No 149
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=28.28 E-value=44 Score=24.89 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=22.4
Q ss_pred HHHHHHHhhcCCccccccccCCCCCHHHHHH
Q 025221 72 RLVLELHAKWGNRWSRIARKLPGRTDNEIKN 102 (256)
Q Consensus 72 ~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~kn 102 (256)
..|..+....|..|..+|++| |=+..+|.+
T Consensus 19 ~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 19 EQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 345566677799999999999 767666644
No 150
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=27.87 E-value=47 Score=26.45 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 69 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 69 EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+-|..|+.++.+.|. .+.+||+.+ |-+...|+.|.+.+....
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 456677777777775 899999999 889999999988887654
No 151
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=27.82 E-value=1.8e+02 Score=21.24 Aligned_cols=93 Identities=14% Similarity=0.022 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhc----cC---------CCC--cCCCCCHHHHHH
Q 025221 9 RKGPWTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNY----LH---------PGL--KRGKMTPQEERL 73 (256)
Q Consensus 9 kkg~WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~----L~---------p~l--~k~~WT~EED~~ 73 (256)
++..+|.|+-..++.++...|...=..||+.+|..+ ..+ .+|.+. +. +.. .+..-.++-|+.
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~--stl-~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~ 80 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPP--STL-STILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGL 80 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCH--HHH-HHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCH--HHH-HHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHH
Confidence 567899999999999987766332237999887432 222 122211 11 111 123356677888
Q ss_pred HHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 74 VLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 74 Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
|++-+.....+ .+| =|...|+.+...+....
T Consensus 81 L~~Wi~~~~~~------g~p-vs~~~I~~kA~~i~~~~ 111 (131)
T 1hlv_A 81 LIAWFQQIRAA------GLP-VKGIILKEKALRIAEEL 111 (131)
T ss_dssp HHHHHHHHGGG------TCC-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC------CCC-CCHHHHHHHHHHHHHHh
Confidence 88877665432 111 27778888887776553
No 152
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=27.62 E-value=53 Score=25.17 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 69 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 69 EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
+-|..|+.++.+.|. .+.+||+.+ |-+...|..|.+.+.....
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-CSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 345567777777665 899999999 8899999999988877643
No 153
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=27.12 E-value=42 Score=26.46 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=30.2
Q ss_pred HHHHHHhhcC--------CccccccccCCC--C---CHHHHHHHHHHHhHHHHH
Q 025221 73 LVLELHAKWG--------NRWSRIARKLPG--R---TDNEIKNYWRTHMRKKAQ 113 (256)
Q Consensus 73 ~Ll~lv~~~G--------~~W~~Ia~~l~g--R---t~~~~knrw~~~lrk~~~ 113 (256)
.|..+|.+.| +.|.+|+..|.- . ....+|..|..+|-.--.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 5677788887 479999999822 2 256899999988876543
No 154
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=26.88 E-value=1.5e+02 Score=20.19 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=32.8
Q ss_pred cCCCCCHHHHHHHHHHHhhcC--C--ccccccccCCCCCHHHHHHHHHHHh
Q 025221 62 KRGKMTPQEERLVLELHAKWG--N--RWSRIARKLPGRTDNEIKNYWRTHM 108 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G--~--~W~~Ia~~l~gRt~~~~knrw~~~l 108 (256)
.+..+|.+.-..|...+..-. . .=..||..+ |=+..+|+.-|.+..
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNRR 59 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKI-NLPESRVQVWFKNRR 59 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-TCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-CcCHHHhhhhhHHHh
Confidence 456799999999988886633 2 235678777 889999987554433
No 155
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=26.45 E-value=31 Score=27.56 Aligned_cols=44 Identities=18% Similarity=0.222 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCC
Q 025221 16 QEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGL 61 (256)
Q Consensus 16 EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l 61 (256)
+-|.+|+.+++..+...+.+||+.+| -+...|+.|..+....++
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCC
Confidence 45778888888888788999999997 677778777766554443
No 156
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=26.05 E-value=91 Score=22.61 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 63 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 63 k~~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
....|+.|-+.|.-++ .|-.-.+||..| |-+...|+.+-..++++-
T Consensus 32 ~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA--EGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHH--HTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 3457888877765543 577788999999 889999999888777764
No 157
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.45 E-value=45 Score=23.76 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCchhhhhhcccccc
Q 025221 16 QEDILLVNFVQLFGDRRWDFIAKVSGLNRT 45 (256)
Q Consensus 16 EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt 45 (256)
-|.+.|.+++..++ ++....|+.+|-.|+
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 36777888888887 688999999985554
No 158
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=24.28 E-value=44 Score=23.57 Aligned_cols=37 Identities=27% Similarity=0.341 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCchhhhhhccccccccccc
Q 025221 13 WTEQEDILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCR 50 (256)
Q Consensus 13 WT~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr 50 (256)
.|...++++..+....|...=-.||+.+| -|+++++-
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VN 43 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVN 43 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcC
Confidence 45565788899999999877788999998 78898873
No 159
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=24.28 E-value=82 Score=22.28 Aligned_cols=35 Identities=17% Similarity=0.083 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHH
Q 025221 68 PQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNY 103 (256)
Q Consensus 68 ~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knr 103 (256)
.-|.+.|.+++..+|.+-++.|+.| |=+...+..+
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~rk 84 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLL-GWGAATLTAK 84 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHHH
Confidence 3477888899999998889999998 7777766554
No 160
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=24.19 E-value=99 Score=17.81 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHH
Q 025221 65 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYW 104 (256)
Q Consensus 65 ~WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw 104 (256)
..++++-..++.++ .-|....+||+.| |-+...|+...
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666677665 3477788999998 88888887643
No 161
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=22.31 E-value=81 Score=23.47 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhhcCCccccccccCCCCCHHHHHHHHHHHhHH
Q 025221 66 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 110 (256)
Q Consensus 66 WT~EED~~Ll~lv~~~G~~W~~Ia~~l~gRt~~~~knrw~~~lrk 110 (256)
.++. ++.++.++-..|-.-.+||..+ |-+...|+.+....+++
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444 4455566666788889999999 99999999987766654
No 162
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=1.2e+02 Score=20.67 Aligned_cols=49 Identities=6% Similarity=0.150 Sum_probs=35.3
Q ss_pred ccCCCCcCCCCCHHHHHHHHHHHhhcC--C--ccccccccCCCCCHHHHHHHHH
Q 025221 56 YLHPGLKRGKMTPQEERLVLELHAKWG--N--RWSRIARKLPGRTDNEIKNYWR 105 (256)
Q Consensus 56 ~L~p~l~k~~WT~EED~~Ll~lv~~~G--~--~W~~Ia~~l~gRt~~~~knrw~ 105 (256)
.++|...+..+|.+.-..|...+.... . .=..||..+ |=+..+|+.-+.
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFq 57 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFS 57 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhH
Confidence 356677788999999999988886532 2 224567776 778899887443
No 163
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.16 E-value=61 Score=22.48 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHhhcC---C-ccccccccCCCCCHHHHHHHHHHHhHHH
Q 025221 67 TPQEERLVLELHAKWG---N-RWSRIARKLPGRTDNEIKNYWRTHMRKK 111 (256)
Q Consensus 67 T~EED~~Ll~lv~~~G---~-~W~~Ia~~l~gRt~~~~knrw~~~lrk~ 111 (256)
+.+.|..|+.++.+.| . .=.+||+.| |-+...|..+-..+.+..
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~L-gvs~~tV~~~L~~L~~~G 59 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKL-GTPKKEINRVLYSLAKKG 59 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHH-CCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 5677788999999988 3 568999999 778888887766555543
No 164
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=21.71 E-value=81 Score=24.07 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhhcCC-ccccccccCCCCCHHHHHHHHHHHhHHHH
Q 025221 69 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKKA 112 (256)
Q Consensus 69 EED~~Ll~lv~~~G~-~W~~Ia~~l~gRt~~~~knrw~~~lrk~~ 112 (256)
+-|..|+.++.+.|. .+.+||+.+ |-+...|..|.+.+.+...
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF-GVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHcCC
Confidence 345667777777665 799999999 8899999999988877654
No 165
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=20.82 E-value=39 Score=27.21 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=27.3
Q ss_pred chhhhhhcccccccccccchhhhccCCCCcCCCCCHHHHHHHHH
Q 025221 33 WDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLE 76 (256)
Q Consensus 33 W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l~k~~WT~EED~~Ll~ 76 (256)
=..||.++. |+|+.++|..+. + ...+|+||++.+++
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I-~nd~t~eEe~~ir~ 161 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------I-VNDFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------C-CCCCCHHHHHHHHT
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------C-CCCCCHHHHHHHHH
Confidence 357888884 899999888653 2 33599999998765
No 166
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=20.67 E-value=53 Score=24.00 Aligned_cols=46 Identities=15% Similarity=0.406 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCCCchhhhhhcccccccccccchhhhccCCCC-------cCCCCCHHHHHHHHH
Q 025221 18 DILLVNFVQLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGL-------KRGKMTPQEERLVLE 76 (256)
Q Consensus 18 D~~L~~lv~~~g~~~W~~IA~~lgp~Rt~~qcr~Rw~~~L~p~l-------~k~~WT~EED~~Ll~ 76 (256)
+..|.++|+.|| |+.+++.+. -.|.. .+|++ .+.+|..+..+.|.-
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lYL 70 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIYL 70 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHHH
Confidence 578999999999 999998773 22322 25554 467888887766543
No 167
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.61 E-value=2.1e+02 Score=19.42 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=32.1
Q ss_pred cCCCCCHHHHHHHHHHHhhcC--C--ccccccccCCCCCHHHHHHHHHHH
Q 025221 62 KRGKMTPQEERLVLELHAKWG--N--RWSRIARKLPGRTDNEIKNYWRTH 107 (256)
Q Consensus 62 ~k~~WT~EED~~Ll~lv~~~G--~--~W~~Ia~~l~gRt~~~~knrw~~~ 107 (256)
.+..+|.+.-..|...+.... . .=..||..+ |=+..+|+.-+.+.
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l-~l~~~qV~~WFqNr 58 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKT-GLTKRVLQVWFQNA 58 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHT-CCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHh-CCCHHHhhHccHHH
Confidence 456799999999888876533 2 235678877 88999998754443
No 168
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.12 E-value=55 Score=23.29 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhCCCCchhhhhhcccccc
Q 025221 15 EQEDILLVNFVQLFGDRRWDFIAKVSGLNRT 45 (256)
Q Consensus 15 ~EED~~L~~lv~~~g~~~W~~IA~~lgp~Rt 45 (256)
.-|.+.|.+++++++ ++....|+.+|-.|+
T Consensus 40 ~~Er~~I~~aL~~~~-GN~s~AA~~LGISR~ 69 (81)
T 1umq_A 40 RVRWEHIQRIYEMCD-RNVSETARRLNMHRR 69 (81)
T ss_dssp HHHHHHHHHHHHHTT-SCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHhCCCHH
Confidence 446777888888887 688999999985554
Done!