Query 025222
Match_columns 256
No_of_seqs 257 out of 1775
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 03:45:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025222.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025222hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04897 heat shock protein Ht 100.0 8.6E-31 1.9E-35 239.4 13.2 209 41-255 3-246 (298)
2 PRK02870 heat shock protein Ht 100.0 1.2E-28 2.7E-33 228.1 14.3 217 37-255 9-272 (336)
3 PRK02391 heat shock protein Ht 100.0 1.6E-27 3.5E-32 217.7 20.5 159 96-255 50-233 (296)
4 PRK03001 M48 family peptidase; 100.0 1.5E-27 3.2E-32 216.6 19.7 158 98-256 43-222 (283)
5 PRK03072 heat shock protein Ht 100.0 1.5E-27 3.3E-32 217.1 19.8 162 94-256 42-227 (288)
6 PRK01345 heat shock protein Ht 100.0 1.5E-27 3.3E-32 219.8 19.8 159 97-256 42-223 (317)
7 PRK03982 heat shock protein Ht 100.0 7.2E-27 1.6E-31 212.6 20.3 158 97-255 43-226 (288)
8 PRK01265 heat shock protein Ht 99.9 1.1E-25 2.3E-30 207.5 20.9 159 96-255 55-243 (324)
9 PRK05457 heat shock protein Ht 99.9 3.9E-25 8.4E-30 201.0 20.4 160 94-255 46-236 (284)
10 COG0501 HtpX Zn-dependent prot 99.9 1E-22 2.2E-27 184.4 17.7 161 92-254 63-249 (302)
11 PF01435 Peptidase_M48: Peptid 99.9 9.1E-23 2E-27 176.8 7.6 134 118-252 26-179 (226)
12 COG4783 Putative Zn-dependent 99.7 7.3E-16 1.6E-20 146.3 14.9 163 87-256 33-226 (484)
13 PF05569 Peptidase_M56: BlaR1 99.7 1.6E-15 3.4E-20 138.2 16.5 120 118-247 136-255 (299)
14 KOG2719 Metalloprotease [Gener 99.6 4.7E-14 1E-18 133.0 18.2 131 116-247 210-378 (428)
15 KOG2661 Peptidase family M48 [ 99.5 2.6E-13 5.7E-18 123.7 11.9 133 118-256 207-360 (424)
16 COG4219 MecR1 Antirepressor re 99.5 1.2E-12 2.6E-17 119.3 14.9 146 90-246 103-248 (337)
17 COG4784 Putative Zn-dependent 99.5 4.2E-13 9.1E-18 123.0 11.2 133 119-255 60-210 (479)
18 PF06114 DUF955: Domain of unk 97.8 0.00012 2.5E-09 56.4 8.0 35 162-200 28-62 (122)
19 PF04228 Zn_peptidase: Putativ 97.5 0.001 2.2E-08 61.1 10.2 106 125-246 99-223 (292)
20 PF01863 DUF45: Protein of unk 97.2 0.0012 2.7E-08 56.5 7.0 69 124-197 113-181 (205)
21 PRK04351 hypothetical protein; 96.6 0.01 2.2E-07 49.3 8.0 67 122-192 3-73 (149)
22 COG1451 Predicted metal-depend 96.5 0.016 3.5E-07 51.3 8.5 71 125-200 125-195 (223)
23 smart00731 SprT SprT homologue 96.1 0.016 3.4E-07 47.7 6.0 67 124-193 2-72 (146)
24 PF13203 DUF2201_N: Putative m 95.8 0.026 5.6E-07 51.3 6.7 37 164-200 44-80 (292)
25 PF10263 SprT-like: SprT-like 95.7 0.08 1.7E-06 43.4 8.7 30 164-193 44-73 (157)
26 PF10463 Peptidase_U49: Peptid 95.0 0.022 4.7E-07 49.9 3.2 42 178-246 99-140 (206)
27 COG2856 Predicted Zn peptidase 94.7 0.034 7.4E-07 48.9 3.9 32 159-194 55-86 (213)
28 PF04450 BSP: Peptidase of pla 94.7 0.071 1.5E-06 46.6 5.8 51 145-196 57-112 (205)
29 PRK04860 hypothetical protein; 94.4 0.15 3.3E-06 42.8 6.8 66 125-193 9-76 (160)
30 PF13699 DUF4157: Domain of un 94.0 0.14 3.1E-06 37.9 5.2 59 130-194 8-75 (79)
31 PF10026 DUF2268: Predicted Zn 93.9 0.28 6E-06 42.3 7.6 70 124-194 4-79 (195)
32 PF04298 Zn_peptidase_2: Putat 92.8 6.2 0.00013 35.0 14.4 67 127-198 41-107 (222)
33 COG3091 SprT Zn-dependent meta 92.5 0.35 7.5E-06 40.3 5.7 66 123-193 5-74 (156)
34 PRK09672 phage exclusion prote 91.8 0.17 3.7E-06 46.6 3.5 42 178-246 163-204 (305)
35 PF14247 DUF4344: Domain of un 90.6 1.6 3.5E-05 38.6 8.4 58 132-193 29-105 (220)
36 TIGR00181 pepF oligoendopeptid 89.0 0.3 6.4E-06 48.8 2.8 43 146-194 349-392 (591)
37 COG1164 Oligoendopeptidase F [ 88.2 0.64 1.4E-05 46.9 4.6 49 141-194 345-394 (598)
38 COG4900 Predicted metallopepti 87.3 1.9 4.2E-05 34.2 5.8 72 122-193 6-93 (133)
39 PF02031 Peptidase_M7: Strepto 86.8 2.1 4.6E-05 34.8 5.9 38 151-193 53-90 (132)
40 COG3590 PepO Predicted metallo 86.1 0.15 3.3E-06 50.6 -1.2 49 142-193 442-500 (654)
41 COG2321 Predicted metalloprote 85.5 2 4.4E-05 39.2 5.7 67 127-193 98-180 (295)
42 PF12388 Peptidase_M57: Dual-a 84.9 1.1 2.4E-05 39.4 3.7 35 163-199 118-153 (211)
43 PF08325 WLM: WLM domain; Int 84.1 3.1 6.6E-05 35.8 6.1 32 164-195 65-97 (186)
44 TIGR02289 M3_not_pepF oligoend 84.0 1.3 2.8E-05 44.1 4.2 65 124-194 273-351 (549)
45 PF13485 Peptidase_MA_2: Pepti 83.6 1.6 3.4E-05 33.3 3.7 32 162-196 10-41 (128)
46 COG2738 Predicted Zn-dependent 80.7 12 0.00026 32.7 8.3 67 130-201 47-113 (226)
47 TIGR02290 M3_fam_3 oligoendope 80.5 2 4.3E-05 43.0 4.1 47 143-194 342-389 (587)
48 PF09768 Peptidase_M76: Peptid 80.2 3 6.5E-05 35.5 4.5 67 122-192 15-83 (173)
49 cd06459 M3B_Oligoendopeptidase 78.5 3.1 6.6E-05 39.3 4.5 43 146-193 192-235 (427)
50 cd04279 ZnMc_MMP_like_1 Zinc-d 76.8 1.7 3.7E-05 35.6 2.0 17 177-193 101-117 (156)
51 PF00413 Peptidase_M10: Matrix 76.5 1.8 3.9E-05 34.8 2.1 34 163-196 86-122 (154)
52 cd04268 ZnMc_MMP_like Zinc-dep 76.0 1.7 3.8E-05 35.4 1.9 32 162-193 72-107 (165)
53 COG3864 Uncharacterized protei 75.5 4.5 9.8E-05 37.8 4.5 34 164-197 53-86 (396)
54 cd04270 ZnMc_TACE_like Zinc-de 75.1 2.1 4.5E-05 38.2 2.2 18 176-193 163-180 (244)
55 PF01433 Peptidase_M1: Peptida 72.9 14 0.0003 34.3 7.3 67 125-196 234-311 (390)
56 cd06460 M32_Taq Peptidase fami 71.3 34 0.00073 33.0 9.5 67 125-196 109-175 (396)
57 PF13688 Reprolysin_5: Metallo 70.8 2.3 4.9E-05 36.0 1.4 17 176-192 138-154 (196)
58 PF14891 Peptidase_M91: Effect 70.8 15 0.00033 30.9 6.4 16 178-193 101-116 (174)
59 PF01432 Peptidase_M3: Peptida 69.4 4.7 0.0001 38.8 3.4 45 148-193 197-255 (458)
60 cd06455 M3A_TOP Peptidase M3 T 69.3 3.7 8E-05 40.0 2.7 46 148-194 216-277 (472)
61 PF01447 Peptidase_M4: Thermol 69.1 2.7 5.7E-05 34.9 1.4 42 147-193 106-148 (150)
62 PF13582 Reprolysin_3: Metallo 68.9 2.7 5.9E-05 32.6 1.4 11 182-192 109-119 (124)
63 PF01431 Peptidase_M13: Peptid 68.8 3.4 7.5E-05 35.2 2.1 36 161-196 7-52 (206)
64 cd06258 Peptidase_M3_like The 67.8 5.2 0.00011 37.2 3.2 47 147-194 111-168 (365)
65 TIGR02414 pepN_proteo aminopep 67.0 7 0.00015 41.3 4.3 19 178-196 281-299 (863)
66 cd04269 ZnMc_adamalysin_II_lik 66.6 3.8 8.3E-05 34.6 1.9 16 177-192 128-143 (194)
67 cd06456 M3A_DCP_Oligopeptidase 66.2 6.4 0.00014 38.0 3.6 44 150-194 165-222 (422)
68 PF13574 Reprolysin_2: Metallo 64.4 3.9 8.5E-05 34.4 1.6 13 181-193 112-124 (173)
69 TIGR03793 TOMM_pelo TOMM prope 64.3 23 0.0005 26.1 5.4 55 121-185 15-76 (77)
70 TIGR02412 pepN_strep_liv amino 63.4 14 0.00031 38.7 5.8 67 127-196 230-303 (831)
71 COG4324 Predicted aminopeptida 62.1 6.3 0.00014 36.1 2.5 34 167-200 181-220 (376)
72 KOG1047 Bifunctional leukotrie 61.5 4.4 9.6E-05 40.5 1.5 32 161-194 270-302 (613)
73 PF01421 Reprolysin: Reprolysi 61.4 7.3 0.00016 33.1 2.7 18 176-193 127-144 (199)
74 cd04267 ZnMc_ADAM_like Zinc-de 61.0 3.5 7.7E-05 34.7 0.7 16 177-192 130-145 (192)
75 KOG3314 Ku70-binding protein [ 60.9 27 0.00058 29.8 5.8 67 128-197 42-108 (194)
76 cd04278 ZnMc_MMP Zinc-dependen 60.7 4.2 9.2E-05 33.3 1.1 20 177-196 104-124 (157)
77 PF05572 Peptidase_M43: Pregna 58.5 5.8 0.00013 32.9 1.6 21 177-197 66-87 (154)
78 cd00203 ZnMc Zinc-dependent me 58.5 4.3 9.4E-05 33.0 0.8 16 177-192 93-108 (167)
79 cd04271 ZnMc_ADAM_fungal Zinc- 57.3 3.6 7.8E-05 36.3 0.1 11 182-192 147-157 (228)
80 PF10023 DUF2265: Predicted am 57.1 6.4 0.00014 37.0 1.7 33 168-200 150-188 (337)
81 cd04272 ZnMc_salivary_gland_MP 56.8 6.6 0.00014 34.1 1.7 14 179-192 144-157 (220)
82 KOG1046 Puromycin-sensitive am 56.4 25 0.00053 37.3 6.1 60 132-196 270-340 (882)
83 PF13583 Reprolysin_4: Metallo 55.1 6.4 0.00014 34.1 1.3 16 182-197 139-155 (206)
84 PRK14015 pepN aminopeptidase N 54.0 26 0.00056 37.2 5.7 18 179-196 295-312 (875)
85 TIGR02411 leuko_A4_hydro leuko 52.5 8.4 0.00018 38.9 1.8 34 161-196 261-295 (601)
86 smart00235 ZnMc Zinc-dependent 50.2 8.8 0.00019 30.5 1.3 12 181-192 87-98 (140)
87 KOG3624 M13 family peptidase [ 46.1 15 0.00033 37.4 2.6 49 144-195 475-533 (687)
88 TIGR02421 QEGLA conserved hypo 45.4 34 0.00074 32.6 4.6 61 122-189 136-197 (366)
89 cd04327 ZnMc_MMP_like_3 Zinc-d 44.5 17 0.00038 31.0 2.3 17 177-193 89-105 (198)
90 PF02163 Peptidase_M50: Peptid 44.3 16 0.00035 30.6 2.1 14 180-193 7-20 (192)
91 cd04277 ZnMc_serralysin_like Z 43.8 16 0.00035 30.6 2.0 35 163-197 94-131 (186)
92 cd04276 ZnMc_MMP_like_2 Zinc-d 43.4 17 0.00037 31.5 2.1 31 163-193 92-129 (197)
93 cd03082 TRX_Fd_NuoE_W_FDH_beta 42.9 75 0.0016 22.7 5.1 52 127-185 19-70 (72)
94 cd04273 ZnMc_ADAMTS_like Zinc- 40.4 5.2 0.00011 34.4 -1.6 13 180-192 140-152 (207)
95 COG3930 Uncharacterized protei 40.3 28 0.0006 33.2 3.1 47 142-190 210-256 (434)
96 PRK10911 oligopeptidase A; Pro 40.3 23 0.00051 36.3 2.9 19 175-194 459-477 (680)
97 PF08014 DUF1704: Domain of un 40.2 51 0.0011 31.1 4.9 65 123-194 112-180 (349)
98 PF01400 Astacin: Astacin (Pep 38.3 47 0.001 28.3 4.0 63 124-193 23-92 (191)
99 cd05709 S2P-M50 Site-2 proteas 38.0 23 0.00049 29.5 2.0 12 181-192 9-20 (180)
100 cd03063 TRX_Fd_FDH_beta TRX-li 36.6 1.3E+02 0.0027 22.9 5.7 69 122-199 16-88 (92)
101 PF12725 DUF3810: Protein of u 36.4 21 0.00046 33.2 1.7 19 175-193 191-209 (318)
102 cd06163 S2P-M50_PDZ_RseP-like 36.2 22 0.00048 30.3 1.7 12 182-193 11-22 (182)
103 cd06161 S2P-M50_SpoIVFB SpoIVF 36.2 25 0.00054 30.4 2.0 13 180-192 38-50 (208)
104 PF05548 Peptidase_M11: Gameto 35.9 88 0.0019 29.1 5.7 65 122-193 90-163 (314)
105 PF06861 BALF1: BALF1 protein; 34.9 29 0.00062 29.7 2.1 23 175-197 127-149 (182)
106 PF12315 DUF3633: Protein of u 34.8 24 0.00053 31.0 1.7 20 174-193 87-106 (212)
107 TIGR03296 M6dom_TIGR03296 M6 f 34.1 9.4 0.0002 34.8 -1.0 13 181-193 166-178 (286)
108 cd06164 S2P-M50_SpoIVFB_CBS Sp 33.3 29 0.00063 30.6 2.0 13 180-192 53-65 (227)
109 cd04280 ZnMc_astacin_like Zinc 33.3 46 0.001 28.0 3.2 30 157-193 58-87 (180)
110 PF14521 Aspzincin_M35: Lysine 32.4 65 0.0014 26.4 3.8 29 163-191 77-107 (148)
111 PF06262 DUF1025: Possibl zinc 31.1 47 0.001 25.5 2.6 33 163-195 50-88 (97)
112 PF02074 Peptidase_M32: Carbox 30.9 1.1E+02 0.0023 30.5 5.7 65 125-194 209-273 (494)
113 PF13398 Peptidase_M50B: Pepti 30.6 33 0.00071 29.5 1.8 16 178-193 20-35 (200)
114 cd06160 S2P-M50_like_2 Unchara 30.3 36 0.00078 29.1 2.0 14 179-192 40-53 (183)
115 PF09471 Peptidase_M64: IgA Pe 29.3 33 0.00072 31.1 1.7 16 177-192 213-228 (264)
116 PF01457 Peptidase_M8: Leishma 28.3 53 0.0012 32.5 3.1 33 164-196 194-226 (521)
117 cd06159 S2P-M50_PDZ_Arch Uncha 27.6 39 0.00085 30.6 1.8 13 180-192 118-130 (263)
118 COG0308 PepN Aminopeptidase N 26.8 49 0.0011 35.0 2.6 20 178-197 305-324 (859)
119 COG1905 NuoE NADH:ubiquinone o 26.0 1.4E+02 0.003 25.2 4.7 55 126-185 94-154 (160)
120 COG4307 Uncharacterized protei 25.5 57 0.0012 30.0 2.5 39 151-192 134-183 (349)
121 COG3824 Predicted Zn-dependent 25.2 37 0.0008 27.5 1.1 29 164-192 86-121 (136)
122 cd06162 S2P-M50_PDZ_SREBP Ster 24.5 48 0.001 30.4 1.8 14 180-193 135-148 (277)
123 PRK11767 SpoVR family protein; 24.5 87 0.0019 31.1 3.7 69 124-192 19-121 (498)
124 cd06461 M2_ACE Peptidase famil 24.1 1.7E+02 0.0037 28.9 5.7 63 124-192 185-259 (477)
125 cd03083 TRX_Fd_NuoE_hoxF TRX-l 23.9 2.6E+02 0.0057 20.1 5.4 33 154-186 47-79 (80)
126 PRK05988 formate dehydrogenase 23.5 1.4E+02 0.003 24.8 4.3 57 125-185 91-152 (156)
127 TIGR00027 mthyl_TIGR00027 meth 23.5 1.8E+02 0.0039 26.1 5.3 72 115-186 105-182 (260)
128 PRK07571 bidirectional hydroge 23.3 2.2E+02 0.0047 24.1 5.5 56 126-185 105-165 (169)
129 cd04281 ZnMc_BMP1_TLD Zinc-dep 22.2 43 0.00092 29.1 1.0 13 181-193 88-100 (200)
130 PF10460 Peptidase_M30: Peptid 22.1 76 0.0017 30.3 2.7 30 164-193 120-152 (366)
131 COG4823 AbiF Abortive infectio 22.1 54 0.0012 29.9 1.7 14 177-190 89-102 (299)
132 PF13402 M60-like: Peptidase M 22.1 3.2E+02 0.0069 24.5 6.8 32 164-195 199-234 (307)
133 cd04283 ZnMc_hatching_enzyme Z 22.0 48 0.001 28.3 1.3 13 181-193 78-90 (182)
134 PF04072 LCM: Leucine carboxyl 21.9 58 0.0013 27.3 1.8 82 104-186 92-181 (183)
135 PRK13267 archaemetzincin-like 21.9 75 0.0016 27.1 2.4 14 179-192 124-137 (179)
136 KOG3714 Meprin A metalloprotea 21.1 46 0.001 32.0 1.1 31 156-193 141-172 (411)
137 PHA02456 zinc metallopeptidase 21.0 55 0.0012 26.2 1.3 27 163-193 66-92 (141)
138 cd02980 TRX_Fd_family Thioredo 20.6 3E+02 0.0065 19.0 5.6 58 122-185 16-75 (77)
139 PF10462 Peptidase_M66: Peptid 20.5 58 0.0013 30.3 1.6 17 179-195 192-209 (305)
140 cd06158 S2P-M50_like_1 Unchara 20.4 67 0.0015 27.2 1.8 13 180-192 9-21 (181)
No 1
>PRK04897 heat shock protein HtpX; Provisional
Probab=99.97 E-value=8.6e-31 Score=239.45 Aligned_cols=209 Identities=18% Similarity=0.237 Sum_probs=148.2
Q ss_pred cccccccc-eeceeeeEeeeeeeeeecCCcccccCccchHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 025222 41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119 (256)
Q Consensus 41 ~~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~hp~d~~~~~~l~~ipgl~~l~~~~~~~~~~r~~~~~~~g~~v~v~~ 119 (256)
|.|+++|+ ||.+++ ..+...+.+.|...+.+..+ +.....++..+ ..++..++.+++...+..+..+ .+++++
T Consensus 3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-a~~v~~ 76 (298)
T PRK04897 3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIALI---IGVIYALIMIFQSTNVVMSMNH-AREVTE 76 (298)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHHH---HHHHHHHHHHHhhHHHHHHhCC-CEECCh
Confidence 67899999 887655 44444444545332211111 11111111111 1234566777778777777664 568899
Q ss_pred CCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHH
Q 025222 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL 199 (256)
Q Consensus 120 ~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~ 199 (256)
+|.|++++.++++|++.|+|.|++|+++++.+|||++|.++.++.|++++|+++.+++||+++|+|||+||++++|..++
T Consensus 77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~ 156 (298)
T PRK04897 77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS 156 (298)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999877788999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH----------hc------------hh---hH-HH------HHHHHH--HHHHHHhHHHHHHHHHHHHHh
Q 025222 200 TFANILTLGAY----------TI------------PG---IG-GM------IAQSLE--EQLFRWLRAAELTCDRAALLV 245 (256)
Q Consensus 200 ~l~~~L~~~~~----------~~------------p~---lg-~~------~~~~l~--~~l~~~sR~~E~~ADr~Al~~ 245 (256)
++...+..... +. +. +. .+ +...+. .....+||.+|++||++|++.
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l 236 (298)
T PRK04897 157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL 236 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 76543321110 00 00 00 00 011111 112478999999999999999
Q ss_pred cCCchHHhcc
Q 025222 246 SQDPKRWSYL 255 (256)
Q Consensus 246 ~~dp~a~~~~ 255 (256)
++||++.+++
T Consensus 237 t~~p~~La~A 246 (298)
T PRK04897 237 TRNPQGLISA 246 (298)
T ss_pred hCCHHHHHHH
Confidence 9999988775
No 2
>PRK02870 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.2e-28 Score=228.07 Aligned_cols=217 Identities=22% Similarity=0.282 Sum_probs=147.4
Q ss_pred cccccccc-cccc-eeceeeeEeeeeeeeeecCCcc------cccCc-cchHHH--HHHHhCCCchH------HHHHHHH
Q 025222 37 GNFKFGSM-KQSR-RMRLVPVCRAAASVVFRDLDAD------DFRHP-LDKQNT--LLLRAIPGLND------LGRALLG 99 (256)
Q Consensus 37 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~gl~~~------~~~hp-~d~~~~--~~l~~ipgl~~------l~~~~~~ 99 (256)
|+-.|++. ++|+ ||.+++ +.+...+.++|...+ .+.|+ +....+ ..++.+|.-.. ++..++.
T Consensus 9 ~~~~~~~~i~~n~~kt~~l~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (336)
T PRK02870 9 GSVDWRKVIRRNRLKTRAVI-ATYLAIFLFIGLLVDAIRIASEYPAASLGKALLALLTFQIFPTATLIMSLVAVISILVT 87 (336)
T ss_pred ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhccccchHHHHHHHHHHHHHHHH
Confidence 44556655 8888 898776 555577777775544 23443 222222 22355452111 1223344
Q ss_pred HHHHHHHHHHHcCCccccCCCC-----cHHHHHHHHHHHHHhCcC-CCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHh
Q 025222 100 TVTEQIMLLENIGTSVLVSKNQ-----LPELHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (256)
Q Consensus 100 ~~~~r~~~~~~~g~~v~v~~~~-----~p~L~~~l~~~~~~l~i~-~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~ 173 (256)
+.+...+.+..++.. .++|++ .|+|++.++++|++.|+| .|++|+++++.+|||++|+++.++.|++++||++
T Consensus 88 y~~~~~~~l~~~~a~-~I~~~~~~p~~~~~L~~~ve~La~~ag~p~~p~V~vi~~~~~NAFA~G~~~~~~~Ivvt~GLL~ 166 (336)
T PRK02870 88 FQNFDKIMLSGTEYK-EITPENALSLQERQLYNVVEELLVAAGLRFMPKVYIIDAPYMNAFASGYSEKSAMVAITTGLLE 166 (336)
T ss_pred HHhhHHHHHHHcCCE-EcCCCCCCchhhHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCceEEecCCCCCcEEEEehHHhh
Confidence 445555555555433 445543 779999999999999999 8999999999999999998766789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH--------H-hch--------h--hHHH----HHHHHH-HHHHH
Q 025222 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA--------Y-TIP--------G--IGGM----IAQSLE-EQLFR 229 (256)
Q Consensus 174 ~L~~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~--------~-~~p--------~--lg~~----~~~~l~-~~l~~ 229 (256)
.+++||+++|+|||+||++++|....+....+.... + .+. . .+.+ +...+. .....
T Consensus 167 ~L~~dEL~aVlAHELgHik~~di~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~ll~~~ 246 (336)
T PRK02870 167 KLDRDELQAVMAHELSHIRHGDIRLTLCVGVLSNIMLIVADFLFYSFMGNRRNSGANRARMIILILRYVLPILTVLLMLF 246 (336)
T ss_pred hCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998776543322110 0 000 0 0101 111111 22357
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHhcc
Q 025222 230 WLRAAELTCDRAALLVSQDPKRWSYL 255 (256)
Q Consensus 230 ~sR~~E~~ADr~Al~~~~dp~a~~~~ 255 (256)
+||.+||+||++|+++++||++.+++
T Consensus 247 iSR~rEy~AD~~Aa~ltg~p~aLasA 272 (336)
T PRK02870 247 LSRTREYMADAGAVELMRDNEPMARA 272 (336)
T ss_pred HHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 89999999999999999999988775
No 3
>PRK02391 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.6e-27 Score=217.71 Aligned_cols=159 Identities=30% Similarity=0.429 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcC
Q 025222 96 ALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL 175 (256)
Q Consensus 96 ~~~~~~~~r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L 175 (256)
.++.+++...+....++ ..+++|.++|++++.++++|++.|++.|++|+++++.+|||++|.++.++.|++++||++.+
T Consensus 50 ~~~~~~~~~~~~~~~~~-~~~~~~~~~p~L~~~v~~la~~~~~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~L 128 (296)
T PRK02391 50 LLAQYFFSDKLALWSMG-ARIVSEDEYPELHAMVERLCALADLPKPRVAVADSDVPNAFATGRSPKNAVVCVTTGLMRRL 128 (296)
T ss_pred HHHHHHHhHHHHHHHcC-CEECChhhCHHHHHHHHHHHHHcCCCCCcEEEEeCCCCceEEecCCCCCcEEEecHHHHhhC
Confidence 34555566666666665 45889999999999999999999999999999999999999999877788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-------ch--------h-hHH-H---HHHH----HH-HHHHHH
Q 025222 176 TRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYT-------IP--------G-IGG-M---IAQS----LE-EQLFRW 230 (256)
Q Consensus 176 ~~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~~-------~p--------~-lg~-~---~~~~----l~-~~l~~~ 230 (256)
|+||+++|+|||+||++++|...++++.++..++.. .. . .+. + +... +. .....+
T Consensus 129 ~~~El~aVlaHElgHi~~~di~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (296)
T PRK02391 129 DPDELEAVLAHELSHVKNRDVAVMTIASFLSTIAFLIVRWGFYFGGFGGRGGGGGGGGILVVILVSLVVWAISFLLIRAL 208 (296)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765443322110 00 0 000 1 1111 11 123578
Q ss_pred hHHHHHHHHHHHHHhcCCchHHhcc
Q 025222 231 LRAAELTCDRAALLVSQDPKRWSYL 255 (256)
Q Consensus 231 sR~~E~~ADr~Al~~~~dp~a~~~~ 255 (256)
||.+|++||++|+..++||++++++
T Consensus 209 SR~rE~~AD~~Aa~ltg~p~~LasA 233 (296)
T PRK02391 209 SRYREFAADRGAAIITGRPSALASA 233 (296)
T ss_pred HHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 9999999999999999999988775
No 4
>PRK03001 M48 family peptidase; Provisional
Probab=99.96 E-value=1.5e-27 Score=216.59 Aligned_cols=158 Identities=22% Similarity=0.321 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCH
Q 025222 98 LGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTR 177 (256)
Q Consensus 98 ~~~~~~r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~ 177 (256)
+.++....+.....+. .++++.|.|++++.++++|++.|++.|++|+++++.+|||++|.+++++.|+++++|++.+++
T Consensus 43 ~~~~~~~~~i~~~~~~-~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~Ivvt~gLl~~l~~ 121 (283)
T PRK03001 43 FSYWFSDKMVLKMYNA-QEVDENTAPQFYRMVRELAQRAGLPMPKVYLINEDQPNAFATGRNPEHAAVAATTGILRVLSE 121 (283)
T ss_pred HHHHHhHHHHHHHcCC-EECCccccHHHHHHHHHHHHHcCCCCCeEEEecCCCcceEEecCCCCCeEEEecHHHHhhCCH
Confidence 3344444444555554 678899999999999999999999999999999999999999986666789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------hc----------hhhHHHHH---HH--HHHHHHHHhHHHH
Q 025222 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------TI----------PGIGGMIA---QS--LEEQLFRWLRAAE 235 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~-------~~----------p~lg~~~~---~~--l~~~l~~~sR~~E 235 (256)
||+++|+|||+||++++|...+++...+..... ++ +....++. .. .......|||.+|
T Consensus 122 ~El~aVlAHElgHi~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SR~~E 201 (283)
T PRK03001 122 REIRGVMAHELAHVKHRDILISTISATMAGAISALANFAMFFGGRDENGRPVNPIAGIAVAILAPLAASLIQMAISRARE 201 (283)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999998876543211110 10 01111111 11 1122357999999
Q ss_pred HHHHHHHHHhcCCchHHhccC
Q 025222 236 LTCDRAALLVSQDPKRWSYLF 256 (256)
Q Consensus 236 ~~ADr~Al~~~~dp~a~~~~f 256 (256)
++||++|++.++||++.++++
T Consensus 202 ~~AD~~a~~l~~~p~~l~~AL 222 (283)
T PRK03001 202 FEADRGGARISGDPQALASAL 222 (283)
T ss_pred HHHhHHHHHHhCCHHHHHHHH
Confidence 999999999999999987753
No 5
>PRK03072 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.5e-27 Score=217.10 Aligned_cols=162 Identities=19% Similarity=0.275 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHh
Q 025222 94 GRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (256)
Q Consensus 94 ~~~~~~~~~~r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~ 173 (256)
+..++.+++...+....++ ..+++|.++|+|++.++++|++.|++.|++|+++++.+|||++|..++++.|++++++++
T Consensus 42 ~~~~~~~~~s~~~~~~~~~-~~~v~~~~~p~L~~~v~~la~~~g~p~p~vyv~~~~~~NAFa~G~~~~~~~v~vt~gLl~ 120 (288)
T PRK03072 42 GMNAYVYWNSDKLALRAMH-AQPVSEVQAPAMYRIVRELSTAARQPMPRLYISPTAAPNAFATGRNPRNAAVCCTEGILQ 120 (288)
T ss_pred HHHHHHHHHhHHHHHHhcC-CEECChhhhHHHHHHHHHHHHHcCCCCCCEEEecCCCCceEEecCCCCCcEEEecHHHHH
Confidence 3445666666666666664 557899999999999999999999999999999999999999997666778999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-------Hhc-----------hh-hHHHHH---HH-H-HHHHHH
Q 025222 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA-------YTI-----------PG-IGGMIA---QS-L-EEQLFR 229 (256)
Q Consensus 174 ~L~~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~-------~~~-----------p~-lg~~~~---~~-l-~~~l~~ 229 (256)
.+++||+++|+|||+||++++|..++++...+.... .+. +. ++.++. .. . ......
T Consensus 121 ~l~~~El~aVlAHElgHi~~~d~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 200 (288)
T PRK03072 121 ILNERELRGVLGHELSHVYNRDILISSVAGALASVITYLANMAMFAGMFGGRRDNDGPNPLALLLVSLLGPIAATVIQLA 200 (288)
T ss_pred hCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999987654332110 000 00 111111 11 1 122357
Q ss_pred HhHHHHHHHHHHHHHhcCCchHHhccC
Q 025222 230 WLRAAELTCDRAALLVSQDPKRWSYLF 256 (256)
Q Consensus 230 ~sR~~E~~ADr~Al~~~~dp~a~~~~f 256 (256)
+||.+|++||++|++.++||+++++++
T Consensus 201 ~SR~rE~~AD~~A~~l~~~p~~La~AL 227 (288)
T PRK03072 201 ISRSREYQADESGAELTGDPLALASAL 227 (288)
T ss_pred HHhHHHHHHhHHHHHHhCCHHHHHHHH
Confidence 899999999999999999999887753
No 6
>PRK01345 heat shock protein HtpX; Provisional
Probab=99.96 E-value=1.5e-27 Score=219.76 Aligned_cols=159 Identities=23% Similarity=0.318 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCC
Q 025222 97 LLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLT 176 (256)
Q Consensus 97 ~~~~~~~r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~ 176 (256)
++.++....+....+ +..+++|.+.|++++.++++|++.|++.|++|+++++.+|||++|.+++++.|+++++|++.++
T Consensus 42 ~~~~~~~~~~~~~~~-~a~~v~~~~~p~L~~~v~~La~~agi~~p~v~vid~~~~NAFa~G~~~~~~~V~vt~gLL~~L~ 120 (317)
T PRK01345 42 LFSYWNSDKMVLRMY-GAQEVDERSAPELYRMVRDLARRAGLPMPKVYIIDNPQPNAFATGRNPENAAVAATTGLLQRLS 120 (317)
T ss_pred HHHHHHhHHHHHHHc-CCeECCcccCHHHHHHHHHHHHHcCCCCCcEEEEcCCCcceEEecCCCCCeEEEechHHHhhCC
Confidence 344445555555545 4567899999999999999999999999999999999999999998666789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------hch-----------hhHHHH---HHHHH--HHHHHHhHH
Q 025222 177 RKELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------TIP-----------GIGGMI---AQSLE--EQLFRWLRA 233 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~-------~~p-----------~lg~~~---~~~l~--~~l~~~sR~ 233 (256)
+||+++|||||+||++++|..++++...+..... .+. .++.++ ...+. .....|||.
T Consensus 121 ~dEL~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~SR~ 200 (317)
T PRK01345 121 PEEVAGVMAHELAHVKNRDTLTMTITATLAGAISMLANFAFFFGGNRENNNGPLGLVGTLAAMIVAPLAAMLVQMAISRT 200 (317)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988876543221110 000 011111 11111 123578999
Q ss_pred HHHHHHHHHHHhcCCchHHhccC
Q 025222 234 AELTCDRAALLVSQDPKRWSYLF 256 (256)
Q Consensus 234 ~E~~ADr~Al~~~~dp~a~~~~f 256 (256)
+|++||++|++.++||+++++++
T Consensus 201 rE~~AD~~A~~ltg~p~~L~~AL 223 (317)
T PRK01345 201 REYAADRRGAEICGNPLWLASAL 223 (317)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999887753
No 7
>PRK03982 heat shock protein HtpX; Provisional
Probab=99.95 E-value=7.2e-27 Score=212.57 Aligned_cols=158 Identities=24% Similarity=0.359 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCC
Q 025222 97 LLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLT 176 (256)
Q Consensus 97 ~~~~~~~r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~ 176 (256)
++.+++...+..... +...+++.+.|++++.++++|++.|++.|++|+++++.+|||++|.+++++.|+++++|++.+|
T Consensus 43 ~~~~~~~~~i~~~~~-~~~~l~~~~~p~L~~~v~~la~~~g~~~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~gLl~~l~ 121 (288)
T PRK03982 43 LISYYYSDKIVLASY-NARIVSEEEAPELYRIVERLAERANIPKPKVAIVPTQTPNAFATGRDPKHAVVAVTEGILNLLN 121 (288)
T ss_pred HHHHHHhHHHHHHhc-CCEECChhhhHHHHHHHHHHHHHcCCCCCeEEEEeCCCcceEEeccCCCCeEEEeehHHHhhCC
Confidence 344445555444443 4567788899999999999999999999999999999999999998776788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----H---h---ch-----------hhHHHHH---HHH--HHHHHHH
Q 025222 177 RKELQAVLAHELGHLKCDHGVWLTFANILTLGA----Y---T---IP-----------GIGGMIA---QSL--EEQLFRW 230 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~----~---~---~p-----------~lg~~~~---~~l--~~~l~~~ 230 (256)
+||++||+|||+||++++|..+.++...+.... . + +. .++.++. ..+ ......+
T Consensus 122 ~~El~AVlAHElgHi~~~h~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 201 (288)
T PRK03982 122 EDELEGVIAHELTHIKNRDTLIQTIAATLAGAIMYLAQWLSWGLWFGGGGRDDRNGGNPIGSLLLIILAPIAATLIQFAI 201 (288)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887654332110 0 0 00 0111111 111 1123578
Q ss_pred hHHHHHHHHHHHHHhcCCchHHhcc
Q 025222 231 LRAAELTCDRAALLVSQDPKRWSYL 255 (256)
Q Consensus 231 sR~~E~~ADr~Al~~~~dp~a~~~~ 255 (256)
||.+|++||++|++.++||++++++
T Consensus 202 SR~~E~~AD~~A~~~~~~p~~l~~a 226 (288)
T PRK03982 202 SRQREFSADEGGARLTGNPLALANA 226 (288)
T ss_pred hHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 9999999999999999999987765
No 8
>PRK01265 heat shock protein HtpX; Provisional
Probab=99.94 E-value=1.1e-25 Score=207.52 Aligned_cols=159 Identities=21% Similarity=0.300 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHcCCccccCCCC--cHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHh
Q 025222 96 ALLGTVTEQIMLLENIGTSVLVSKNQ--LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173 (256)
Q Consensus 96 ~~~~~~~~r~~~~~~~g~~v~v~~~~--~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~ 173 (256)
.++.++....+.....+ ..+++|.+ +|+|++.++++|++.|++.|++|+++++.+|||++|.+.+++.|+++++|++
T Consensus 55 ~~~~~~~sp~li~~~~~-a~~~~p~~~~~~~L~~~v~~la~~~g~~~p~vyv~~~~~~NAfa~G~~~~~~~Ivvt~gLl~ 133 (324)
T PRK01265 55 NIIQWLFGPYMINAAYR-TVEVTPTDPVYGWLYSIVAEVAKYNGIRVPKVYIADVPFPNAFAYGSPIAGKRIAITLPLLK 133 (324)
T ss_pred HHHHHHHhHHHHHHHcC-CeeCCCCCcccHHHHHHHHHHHHHcCCCCCeEEEecCCCCCeEEeccCCCCCEEEEehHHHh
Confidence 34555566666665554 33566655 8999999999999999999999999999999999997656689999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH-------h--c-h---------h----hHHHH---HHHH-HHH
Q 025222 174 LLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAY-------T--I-P---------G----IGGMI---AQSL-EEQ 226 (256)
Q Consensus 174 ~L~~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~-------~--~-p---------~----lg~~~---~~~l-~~~ 226 (256)
.+++||+++|+|||+||++++|...++++..+..... + + . + +..++ ...+ ...
T Consensus 134 ~l~~~El~aVlAHElgHik~~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ll~~~~~~i~~~l 213 (324)
T PRK01265 134 ILNRDEIKAVAGHELGHLKHRDVELLMAIGLIPTLIYYLGYSLFWGGMFGGGGGGRGNNGGLLFLIGIALMAVSFVFNLL 213 (324)
T ss_pred hCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988875533221110 0 0 0 0 00011 1111 123
Q ss_pred HHHHhHHHHHHHHHHHHH-hcCCchHHhcc
Q 025222 227 LFRWLRAAELTCDRAALL-VSQDPKRWSYL 255 (256)
Q Consensus 227 l~~~sR~~E~~ADr~Al~-~~~dp~a~~~~ 255 (256)
.+.+||.+||+||+.|+. .+++|++++++
T Consensus 214 ~~aiSR~rEy~AD~~aa~~~tg~p~~LasA 243 (324)
T PRK01265 214 VLSINRMREAYADVNSALTVPGGAENLQTA 243 (324)
T ss_pred HHHHHHHHHHHHhHHHHHhhcCChHHHHHH
Confidence 457899999999999998 56999988765
No 9
>PRK05457 heat shock protein HtpX; Provisional
Probab=99.94 E-value=3.9e-25 Score=200.98 Aligned_cols=160 Identities=21% Similarity=0.298 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCccccC-CCC--cHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHH
Q 025222 94 GRALLGTVTEQIMLLENIGTSVLVS-KNQ--LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTS 170 (256)
Q Consensus 94 ~~~~~~~~~~r~~~~~~~g~~v~v~-~~~--~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~g 170 (256)
+..++.+.....+....++.. .++ |.+ .|.+++.++++|++.|+|.|++|+++++.+|||++|.++++..|++++|
T Consensus 46 ~~~~~~~~~~~~i~~~~~~a~-~i~~~~~~~~~~L~~~v~~la~~~g~p~p~v~v~~~~~~NAfa~G~~~~~~~V~vt~g 124 (284)
T PRK05457 46 GGSFISLLMSKWMAKRSTGAE-VIEQPRNETERWLVETVARQARQAGIGMPEVAIYHSPEINAFATGASKNNSLVAVSTG 124 (284)
T ss_pred HHHHHHHHHHHHHHHHhcCCe-ECCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEeCCCceEEEecCCCCCeEEEeehH
Confidence 455667777777766666544 443 433 3469999999999999999999999999999999998777888999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhcchHHHHHHHHH-HHH--------HH----hc------hhhHH----HH----HHHH
Q 025222 171 LVELLTRKELQAVLAHELGHLKCDHGVWLTFANIL-TLG--------AY----TI------PGIGG----MI----AQSL 223 (256)
Q Consensus 171 Ll~~L~~~EL~aVlaHElgHi~~~H~~~~~l~~~L-~~~--------~~----~~------p~lg~----~~----~~~l 223 (256)
|++.+|+||++||+|||+||++++|....+++..+ ... .. +. ++++. ++ ...+
T Consensus 125 Ll~~L~~~El~aVlAHElgHi~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 204 (284)
T PRK05457 125 LLQNMSRDEVEAVLAHEISHIANGDMVTMTLIQGVVNTFVIFLSRIIAQIVDRFVSGNEEGNGIGYFIVSIVLEIVFGIL 204 (284)
T ss_pred HhhhCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887544221 100 00 00 11111 11 1111
Q ss_pred H-HHHHHHhHHHHHHHHHHHHHhcCCchHHhcc
Q 025222 224 E-EQLFRWLRAAELTCDRAALLVSQDPKRWSYL 255 (256)
Q Consensus 224 ~-~~l~~~sR~~E~~ADr~Al~~~~dp~a~~~~ 255 (256)
. .....+||.+|++||+.|++.++ |++++++
T Consensus 205 ~~ll~~~~SR~rEy~AD~~Aa~ltg-p~~L~~A 236 (284)
T PRK05457 205 ASIIVMWFSRHREFRADAGGAKLAG-REKMIAA 236 (284)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhC-HHHHHHH
Confidence 1 12357799999999999999997 8877765
No 10
>COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1e-22 Score=184.36 Aligned_cols=161 Identities=27% Similarity=0.387 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCC--cHH----HHHHHHHHHHHhCcC-CCcEEEEeCCCCCEEEEeecCCCCE
Q 025222 92 DLGRALLGTVTEQIMLLENIGTSVLVSKNQ--LPE----LHQLMTEAAEILNLE-APDLYVRQSPVPNAYTLAISGKKPF 164 (256)
Q Consensus 92 ~l~~~~~~~~~~r~~~~~~~g~~v~v~~~~--~p~----L~~~l~~~~~~l~i~-~p~vyv~~~~~~NA~a~G~~~~~~~ 164 (256)
.+...++++...+.+.....+.. .+.+.. .+. +...+.+++...+++ .|++|+++++.+|||++|.+++++.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~~v~i~~~~~~NAFa~g~~~~~~~ 141 (302)
T COG0501 63 AFAALLISLLFSKALVLKSLGAL-TLSEPILLAPRLYAVLLLKVAELARQAGIPHMPEVYILETPQPNAFALGGGPKNGR 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHhcee-ecccccccchHHHHHHHHHHHHHHHHCCCCCCCeeEEecCCCccceecCCCCCCee
Confidence 33555667777777777666552 222222 343 445899999999998 8999999999999999997656789
Q ss_pred EEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHH----Hhchh---------hHHH----HH-HHHHH
Q 025222 165 VVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT-FANILTLGA----YTIPG---------IGGM----IA-QSLEE 225 (256)
Q Consensus 165 Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~~-l~~~L~~~~----~~~p~---------lg~~----~~-~~l~~ 225 (256)
|++++||++.+|+||+++|||||+||++++|...+. +........ ..... .... +. .....
T Consensus 142 V~vt~gLl~~l~~dEl~aVlaHElgHi~~rd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (302)
T COG0501 142 VVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRLTLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATL 221 (302)
T ss_pred EEecHHHHhhCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999833 222211110 00000 0001 11 11223
Q ss_pred HHHHHhHHHHHHHHHHHHHhcCCchHHhc
Q 025222 226 QLFRWLRAAELTCDRAALLVSQDPKRWSY 254 (256)
Q Consensus 226 ~l~~~sR~~E~~ADr~Al~~~~dp~a~~~ 254 (256)
..+.|||.+|++||+.|++.++ ++.+.+
T Consensus 222 ~~~~~SR~~E~~AD~~a~~l~~-~~~l~~ 249 (302)
T COG0501 222 LVLAFSRKREYEADRFAAKLTG-PEKLAS 249 (302)
T ss_pred HHHHHHHHhHHhhhhchhhccC-hHHHHH
Confidence 4578999999999999999999 665544
No 11
>PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification. ; InterPro: IPR001915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M48 (Ste24 endopeptidase family, clan M-); members of both subfamily are represented. The members of this set of proteins are mostly described as probable protease htpX homologue (3.4.24 from EC) or CAAX prenyl protease 1, which proteolytically removes the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and Golgi, binding one zinc ion per subunit. In Saccharomyces cerevisiae (Baker's yeast) Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification is complete. The Ste24p contains multiple predicted membrane spans, a zinc metalloprotease motif (HEXXH), and a COOH-terminal ER retrieval signal (KKXX). The HEXXH protease motif is critical for Ste24p activity, since Ste24p fails to function when conserved residues within this motif are mutated. The Ste24p homologues occur in a diverse group of organisms, including Escherichia coli, Schizosaccharomyces pombe (Fission yeast), Haemophilus influenzae, and Homo sapiens (Human), which indicates that the gene is highly conserved throughout evolution. Ste24p and the proteins related to it define a subfamily of proteins that are likely to function as intracellular, membrane-associated zinc metalloproteases []. HtpX is a zinc-dependent endoprotease member of the membrane-localized proteolytic system in E. coli, which participates in the proteolytic quality control of membrane proteins in conjunction with FtsH, a membrane-bound and ATP-dependent protease. Biochemical characterisation revealed that HtpX undergoes self-degradation upon cell disruption or membrane solubilization. It can also degraded casein and cleaves solubilized membrane proteins, for example, SecY []. Expression of HtpX in the plasma membrane is under the control of CpxR, with the metalloproteinase active site of HtpX located on the cytosolic side of the membrane. This suggests a potential role for HtpX in the response to mis-folded proteins [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 3CQB_A 3C37_B.
Probab=99.87 E-value=9.1e-23 Score=176.81 Aligned_cols=134 Identities=31% Similarity=0.419 Sum_probs=85.9
Q ss_pred CCCCcHHHHHHHHHHHHHh--CcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcc
Q 025222 118 SKNQLPELHQLMTEAAEIL--NLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH 195 (256)
Q Consensus 118 ~~~~~p~L~~~l~~~~~~l--~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H 195 (256)
.|.+.|+|++.++++|++. +.+.|++|+++++.+|||++|.+. ++.|+|++++++.++++|+++|||||+||++++|
T Consensus 26 ~~~~~~~L~~~v~~l~~~~~~~~~~~~v~v~~~~~~NA~~~g~~~-~~~I~v~~~ll~~~~~~el~aVlaHElgH~~~~h 104 (226)
T PF01435_consen 26 TPLEDPELRRIVEELARRAGLGIPPPRVYVIDSPSPNAFATGGGP-RKRIVVTSGLLESLSEDELAAVLAHELGHIKHRH 104 (226)
T ss_dssp -B-HHHHHHHHHHHHHHHHHCTSS--EEEEE--SSEEEEEETTTC---EEEEEHHHHHHSSHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHHHHHHHHHHHHHHhcCCCCCCeEEEEcCCCCcEEEEccCC-CcEEEEeChhhhcccHHHHHHHHHHHHHHHHcCC
Confidence 3778999999999999999 777789999999999999999643 6899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH----HHHh-c---hhh---HH-------HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHH
Q 025222 196 GVWLTFANILTL----GAYT-I---PGI---GG-------MIAQSLEEQLFRWLRAAELTCDRAALLVSQDPKRW 252 (256)
Q Consensus 196 ~~~~~l~~~L~~----~~~~-~---p~l---g~-------~~~~~l~~~l~~~sR~~E~~ADr~Al~~~~dp~a~ 252 (256)
..+.+....+.. .... + ... .. .+..........|+|.+|++||++|+..+++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~E~~AD~~a~~~~~~~~~l 179 (226)
T PF01435_consen 105 ILKSLLISLLLSILFFALLALLIGSMSLFSAFGFIDILGILIAFLFQLLTNAFSRRQEYEADRYAARLGGDPALL 179 (226)
T ss_dssp CCCCCCHHH-HHHHHHHHHT-----HHHHHHHH----------HHSTT------HHHHHHHHHHHHHH------H
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHhhcchhHHHHHHHHHHHHHhcCCcHHH
Confidence 976633222111 1000 0 000 00 00011122456899999999999999999998864
No 12
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.68 E-value=7.3e-16 Score=146.32 Aligned_cols=163 Identities=23% Similarity=0.331 Sum_probs=107.9
Q ss_pred CCCchHHHHHHHHHHHHH----HHHHHHcCCccccCCCCcHHHHHHHHHHHHH----hCcC-CC-cEEEEeCCCCCEEEE
Q 025222 87 IPGLNDLGRALLGTVTEQ----IMLLENIGTSVLVSKNQLPELHQLMTEAAEI----LNLE-AP-DLYVRQSPVPNAYTL 156 (256)
Q Consensus 87 ipgl~~l~~~~~~~~~~r----~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~----l~i~-~p-~vyv~~~~~~NA~a~ 156 (256)
+|++.....+.+++-.|. .+..+..+. +..-.+|+|.+.++++..+ .|.+ .| ++++++++.+|||++
T Consensus 33 lp~ig~~~~s~ls~~qev~~g~~~~~Qlr~~---~~~i~D~el~~yv~~~g~rL~~~a~~~~~~f~f~lV~d~~iNAFA~ 109 (484)
T COG4783 33 LPDIGVSAGSTLSPAQEVALGDPANAQLRGS---VPLIRDPELEEYVNSLGQRLAAAADLVKTPFTFFLVNDDSINAFAT 109 (484)
T ss_pred cchhhhhhhhcCCHHHHHHhhHHHHHHhccC---CCCcCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCccchhhc
Confidence 456655555555554443 333343333 3445678888888776554 4544 34 888999999999998
Q ss_pred eecCCCCEEEECHHHHhcC-CHHHHHHHHHHHHHHHHhcchHHHHH----------HHHH-HHHHHhc-h--hhHHHHH-
Q 025222 157 AISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHLKCDHGVWLTF----------ANIL-TLGAYTI-P--GIGGMIA- 220 (256)
Q Consensus 157 G~~~~~~~Ivl~~gLl~~L-~~~EL~aVlaHElgHi~~~H~~~~~l----------~~~L-~~~~~~~-p--~lg~~~~- 220 (256)
. ..+|+|++||+-.. |++||++|||||+||+..+|..+.+= +.++ ..++... + +...+..
T Consensus 110 ~----Gg~v~vntGLll~ae~esElagViAHEigHv~qrH~aR~~e~~~r~~~~~i~~ml~gi~aa~a~~~ag~a~iag~ 185 (484)
T COG4783 110 P----GGYVVVNTGLLLTAENESELAGVIAHEIGHVAQRHLARSMEQQQRAAPMAIAGMLLGILAALAGADAGMAGIAGA 185 (484)
T ss_pred C----CceEEEehHHHHhcCCHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhchhHHHHHHHHHHHHHhCccccHHHHHHH
Confidence 2 13899999998766 78999999999999999999976542 2121 1111111 1 1111111
Q ss_pred -HHHHHHHHHHhHHHHHHHHHHHHHhc----CCchHHhccC
Q 025222 221 -QSLEEQLFRWLRAAELTCDRAALLVS----QDPKRWSYLF 256 (256)
Q Consensus 221 -~~l~~~l~~~sR~~E~~ADr~Al~~~----~dp~a~~~~f 256 (256)
.+...-...|+|..|.+|||+|+..+ .||++++++|
T Consensus 186 ~a~~~~g~L~~sR~~E~eADr~Gi~~L~raGydp~gM~~ff 226 (484)
T COG4783 186 LAGAAQGQLNFSRQNEQEADRIGITTLVRAGYDPQGMPEFF 226 (484)
T ss_pred HHHhhhhhhhcchhhHHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 11112245899999999999999876 6999998876
No 13
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=99.68 E-value=1.6e-15 Score=138.24 Aligned_cols=120 Identities=29% Similarity=0.411 Sum_probs=95.5
Q ss_pred CCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchH
Q 025222 118 SKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 118 ~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~ 197 (256)
++..++++.+.+++++++.|++.+......+....++++|+ .+|.|+++.++.+.++++|++.|+.||++|++++|.+
T Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~s~~i~sP~~~G~--~~p~I~lP~~~~~~~~~~el~~il~HEl~Hikr~D~~ 213 (299)
T PF05569_consen 136 RPVEDEELQALLEECKEELGIKRPIRIRVSSGISSPFVFGF--LRPVIVLPESLLEDLSEEELRAILLHELAHIKRRDLL 213 (299)
T ss_pred cccCcHHHHHHHHHHHHHhCCCCceEEEEcCCCCCCeeecC--cceEEEecCccccccCHHHHHHHHHHHHHHHHCCChH
Confidence 44566789999999999999885522233344557889997 6899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Q 025222 198 WLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQ 247 (256)
Q Consensus 198 ~~~l~~~L~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~Al~~~~ 247 (256)
++.+..++..+.++.|.++ ++ ..+..+.+|+.||+.++..++
T Consensus 214 ~~~l~~l~~~l~WfnP~~~-~~-------~~~~~~~~E~~cD~~vl~~l~ 255 (299)
T PF05569_consen 214 WKLLAELLCALHWFNPLVW-LL-------RRRIRRDRELACDEAVLRNLG 255 (299)
T ss_pred HHHHHHHHHHHHHhhHHHH-HH-------HHHHHHHHHHhhhHHHHHhcC
Confidence 9999887766555555433 32 235567899999999999853
No 14
>KOG2719 consensus Metalloprotease [General function prediction only]
Probab=99.60 E-value=4.7e-14 Score=133.03 Aligned_cols=131 Identities=26% Similarity=0.263 Sum_probs=96.5
Q ss_pred ccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEe----CCCCCEEEEeecCCCCEEEECHHHH--hc-CCHHHHHHHHHHHH
Q 025222 116 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLV--EL-LTRKELQAVLAHEL 188 (256)
Q Consensus 116 ~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~----~~~~NA~a~G~~~~~~~Ivl~~gLl--~~-L~~~EL~aVlaHEl 188 (256)
+.+|.++.++.+.++++++..|.|..+++|++ +...|||.+|++ ....|+|.+.++ +. +++||+.||+|||+
T Consensus 210 K~~PLe~g~l~~~Ie~la~s~gfp~~k~~vi~~s~rs~hsNAyfyG~~-~~KRIvIyDtLl~~~~~~~~eel~AVl~HEL 288 (428)
T KOG2719|consen 210 KFTPLEEGDLKEKIERLADSVGFPLSKYRVIDGSKRSSHSNAYFYGLC-KNKRIVIYDTLLLEEEHLNNEELVAVLAHEL 288 (428)
T ss_pred CCCCCCCCchHHHHHHHHHhcCCCceEEEEEecCCCCCCCCeeeeecc-ccceEEEehhhhhhhhccccHHHHHHHHHHh
Confidence 45667777899999999999999998899988 347999999985 567899999998 33 58999999999999
Q ss_pred HHHHhcchHHHHHHHHHHHHH--------H------------h-chhh-HHH-HHHHHH--------HHHHHHhHHHHHH
Q 025222 189 GHLKCDHGVWLTFANILTLGA--------Y------------T-IPGI-GGM-IAQSLE--------EQLFRWLRAAELT 237 (256)
Q Consensus 189 gHi~~~H~~~~~l~~~L~~~~--------~------------~-~p~l-g~~-~~~~l~--------~~l~~~sR~~E~~ 237 (256)
||++++|..+++++..+.... + . .|.+ |.+ +..... -.+.-.||..|+.
T Consensus 289 GHW~~~H~~K~~ii~~~~l~l~~llF~~~~~~~~ly~a~Gf~~~~P~~ig~livf~~~l~py~~l~~~~~n~~sR~fEyq 368 (428)
T KOG2719|consen 289 GHWKLNHVLKNIIIMQIHLFLEFLLFGFLYRNPKLYAAFGFIDEQPSLIGFLIVFQFVLAPYRALLNFLMNLISRRFEYQ 368 (428)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHcCcchheeecCCCCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 999999999998653321110 0 0 2322 222 111111 1223458999999
Q ss_pred HHHHHHHhcC
Q 025222 238 CDRAALLVSQ 247 (256)
Q Consensus 238 ADr~Al~~~~ 247 (256)
||++|.+.--
T Consensus 369 AD~fA~klGY 378 (428)
T KOG2719|consen 369 ADAFAKKLGY 378 (428)
T ss_pred HHHHHHHcCC
Confidence 9999987653
No 15
>KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.6e-13 Score=123.70 Aligned_cols=133 Identities=26% Similarity=0.348 Sum_probs=91.7
Q ss_pred CCCCcH---HHHHHHHHHHHHhC----cC--CCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcC-CHHHHHHHHHHH
Q 025222 118 SKNQLP---ELHQLMTEAAEILN----LE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHE 187 (256)
Q Consensus 118 ~~~~~p---~L~~~l~~~~~~l~----i~--~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L-~~~EL~aVlaHE 187 (256)
-|.+.| .+.+.+.++.+..+ +. .-++.|+++|.+|||+.. + ..|++-+|++..+ +++++++|||||
T Consensus 207 Lp~~hp~sl~V~~vlk~iIea~~~~~slsgIkWeihVVndPipNAFvLP--g--GKvfVFtgiLn~ck~ddglAtvLgHE 282 (424)
T KOG2661|consen 207 LPEKHPRSLAVKEVLKHIIEANKDVPSLSGIKWEIHVVNDPIPNAFVLP--G--GKVFVFTGILNSCKDDDGLATVLGHE 282 (424)
T ss_pred CCcCCchhhHHHHHHHHHHHHhccCCcccCceeEEEEecCCCCceeecc--C--CeEEEEechhhcccChHHHHHHHHHH
Confidence 345555 35555666555554 33 348999999999999974 2 3689999999887 789999999999
Q ss_pred HHHHHhcchHHHHH----HHHHHHHHHhchhhHHHHHH-HHHH--HHHHHhHHHHHHHHHHHHHhc----CCchHHhccC
Q 025222 188 LGHLKCDHGVWLTF----ANILTLGAYTIPGIGGMIAQ-SLEE--QLFRWLRAAELTCDRAALLVS----QDPKRWSYLF 256 (256)
Q Consensus 188 lgHi~~~H~~~~~l----~~~L~~~~~~~p~lg~~~~~-~l~~--~l~~~sR~~E~~ADr~Al~~~----~dp~a~~~~f 256 (256)
+||...+|..-+.. ..++...++.+-+ ....+ .+.. ..+.+||+.|.+||.+|+.++ -||+++.++|
T Consensus 283 ~aHaVarH~AEki~k~~~~siLgLvlyt~~~--a~~~n~~Ll~~flrlPfSRKMEtEADyIGLlLma~Acfdpras~tvw 360 (424)
T KOG2661|consen 283 IAHAVARHAAEKIGKVHLLSILGLVLYTMIW--AICPNDKLLEYFLRLPFSRKMETEADYIGLLLMAKACFDPRASSTVW 360 (424)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHh--hccchHHHHHHHhcCcchhhhhhhhhHHHHHHHHHhhcCcccchHHH
Confidence 99999999976542 2233333332211 11111 1111 235789999999999998764 6999988775
No 16
>COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-12 Score=119.28 Aligned_cols=146 Identities=19% Similarity=0.194 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECH
Q 025222 90 LNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHT 169 (256)
Q Consensus 90 l~~l~~~~~~~~~~r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~ 169 (256)
+.|+.+.++..++-...+.........--+...-+..+.+.++.+.+....+.+. ..+...+..++|. .+|.|++++
T Consensus 103 ~lWi~g~li~~~~~~~~~~~~~~r~~~sl~~~e~d~~~~~~~~~~~~~~k~i~ir-~s~~i~~P~v~gl--~kp~IvlP~ 179 (337)
T COG4219 103 LLWIVGALIGLFYFIVARLARFVRKLGSLEPNEVDKRKIVTILKNHQYKKHILIR-KSKAIDGPMVFGL--VKPCIVLPA 179 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccHHHHHHHHHHhhhccCeeEe-ecccCCCceeecc--CcceEEccH
Confidence 4566777776666443333322111111122234567778888888876665333 2334557778887 689999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 025222 170 SLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (256)
Q Consensus 170 gLl~~L~~~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~Al~~~ 246 (256)
.+.+.++++|++.|++||++|+++||...+.+...+..+.++.| +-.+.. ....-++|..||+.++...
T Consensus 180 d~~~r~~~ee~~yIilHEl~Hlk~gD~i~n~i~~~~~~l~WfNP-~v~l~~-------~~~~~D~E~aCDa~vL~~~ 248 (337)
T COG4219 180 DFVERLTDEELKYIILHELSHLKRGDAIINLIVVVLGVLFWFNP-LVHLGK-------RKIRIDQEIACDAAVLARI 248 (337)
T ss_pred HHHhhcCHHhhhhhHhHHHhhhhcccHHHHHHHHHHhHHhhcCh-HHHHHH-------HHHHhhHHHHhhHHHHhcc
Confidence 99999999999999999999999999999998877766554444 333322 2334579999999998765
No 17
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=99.46 E-value=4.2e-13 Score=123.02 Aligned_cols=133 Identities=23% Similarity=0.338 Sum_probs=94.1
Q ss_pred CCCcHHHHHHHHHHHHHhCcC--CC----cEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcC-CHHHHHHHHHHHHHHH
Q 025222 119 KNQLPELHQLMTEAAEILNLE--AP----DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELL-TRKELQAVLAHELGHL 191 (256)
Q Consensus 119 ~~~~p~L~~~l~~~~~~l~i~--~p----~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L-~~~EL~aVlaHElgHi 191 (256)
+-.+|.+..++.++..++-.. .| ++-|+++|.+|||+.. ..+++|+.||+..+ |..|+++||+||+||+
T Consensus 60 eY~D~Kler~Vari~g~lt~~S~~p~q~YriTilnSP~INAFALP----GGYlYitRGLlAland~sEvAAVl~HEmgHV 135 (479)
T COG4784 60 EYRDPKLERMVARIVGALTAVSENPQQTYRITILNSPNINAFALP----GGYLYITRGLLALANDSSEVAAVLAHEMGHV 135 (479)
T ss_pred ccCCHHHHHHHHHHHhHhhhhccCCCceEEEEEecCCCccccccC----CceEEEehhHHHHcCCHHHHHHHHHhhhhhe
Confidence 456888888888887766432 23 6778999999999974 25999999999987 5679999999999999
Q ss_pred HhcchHHHHHHHH----HHHHHHhc---hhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC----CchHHhcc
Q 025222 192 KCDHGVWLTFANI----LTLGAYTI---PGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVSQ----DPKRWSYL 255 (256)
Q Consensus 192 ~~~H~~~~~l~~~----L~~~~~~~---p~lg~~~~~~l~~~l~~~sR~~E~~ADr~Al~~~~----dp~a~~~~ 255 (256)
..+|.....-... +....... ...|.....--...+..|+|.+|++||.+|++..+ ||.+++++
T Consensus 136 tAnHgi~rQ~~e~a~~ia~rvva~vl~~~~agk~A~~rGklrla~fsRnqELqAD~iG~~~lgeAGYDP~A~~rf 210 (479)
T COG4784 136 TANHGIQRQQREAAEVIASRVVAEVLGSDAAGKQALIRGKLRLAQFSRNQELQADAIGIKMLGEAGYDPYAAARF 210 (479)
T ss_pred ecchhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHhhhhHHHhhhccchhhhhhhhhHHHHHhcCCChHHHHHH
Confidence 9999987653221 11111111 11122111111234678999999999999999885 78777654
No 18
>PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function. A conserved H-E-X-X-H motif is suggestive of a catalytic active site and shows similarity to IPR001915 from INTERPRO.; PDB: 3DTE_A 3DTK_A 3DTI_A.
Probab=97.80 E-value=0.00012 Score=56.41 Aligned_cols=35 Identities=31% Similarity=0.545 Sum_probs=28.6
Q ss_pred CCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHHH
Q 025222 162 KPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (256)
Q Consensus 162 ~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~~ 200 (256)
.++|+|++. +++.+..++++||+||+..+|.....
T Consensus 28 ~~~I~in~~----~~~~~~~f~laHELgH~~~~~~~~~~ 62 (122)
T PF06114_consen 28 NPIIFINSN----LSPERQRFTLAHELGHILLHHGDETF 62 (122)
T ss_dssp TTEEEEESS----S-HHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred CCEEEECCC----CCHHHHHHHHHHHHHHHHhhhccccc
Confidence 789999987 68999999999999999987776543
No 19
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=97.45 E-value=0.001 Score=61.06 Aligned_cols=106 Identities=21% Similarity=0.156 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhCcC--CCcEEEEeCCC----------CCEEEEeecCCCCEEEECHHHHhcCC-------HHHHHHHHH
Q 025222 125 LHQLMTEAAEILNLE--APDLYVRQSPV----------PNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVLA 185 (256)
Q Consensus 125 L~~~l~~~~~~l~i~--~p~vyv~~~~~----------~NA~a~G~~~~~~~Ivl~~gLl~~L~-------~~EL~aVla 185 (256)
+.+.+.+.-++.|.+ .|++.++.+.. .||| +++.+..|++...+++.|. +--..+|||
T Consensus 99 le~~W~~~~~~~g~~y~~P~lv~~~~~~~t~CG~a~s~~gpF---YCp~D~tIYlD~~f~~~L~~~~ga~G~~a~ayVlA 175 (292)
T PF04228_consen 99 LEDVWTPQFPQAGLPYRPPKLVLFSGSVQTGCGTASSATGPF---YCPADQTIYLDLSFFDELQQRFGASGDFAQAYVLA 175 (292)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCCCCCCCcCCCCCE---eCCCCCEEEechHHHHHHHHHhCCccHHHHHHHHH
Confidence 345555566667776 67877765332 2333 2345668999988765442 334678999
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 025222 186 HELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (256)
Q Consensus 186 HElgHi~~~H~~~~~l~~~L~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~Al~~~ 246 (256)
||.||..+... .++...-....... ...-..++|..|+.||-+|=..+
T Consensus 176 HEyGHHVQ~l~------Gil~~~~~~~~~~~-------~~~~~~~svr~ELQADC~AGvw~ 223 (292)
T PF04228_consen 176 HEYGHHVQNLL------GILDAVRQAQQGRS-------PAEANELSVRLELQADCFAGVWA 223 (292)
T ss_pred HHHHHHHHHHh------hhHHHHHHHhhccC-------ccccchHHHHHHHHHHHHHHHHh
Confidence 99999875322 11111000000000 00113567889999999886554
No 20
>PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C terminus being the most conserved region, containing three conserved histidines.
Probab=97.17 E-value=0.0012 Score=56.49 Aligned_cols=69 Identities=22% Similarity=0.294 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchH
Q 025222 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 124 ~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~ 197 (256)
.+.+.+...++.+|++.|++.|.+... .+|-+..+..|.++..|+ .++.+-+.+|+.|||+|+.+.+.-
T Consensus 113 ~l~~~~~~~~~~~~~~~~~i~ir~~ks----rWGsc~~~~~I~ln~~L~-~~P~~~idYVvvHEL~Hl~~~nHs 181 (205)
T PF01863_consen 113 YLPERLKKYAKKLGLPPPKIKIRDMKS----RWGSCSSKGNITLNWRLV-MAPPEVIDYVVVHELCHLRHPNHS 181 (205)
T ss_pred HHHHHHHHHHHHcCCCcceEEEeehhh----ccccCCCCCcEEeecccc-cCCccHHHHHHHHHHHHhccCCCC
Confidence 356667778889999988888876543 245444677899999988 589999999999999999875543
No 21
>PRK04351 hypothetical protein; Provisional
Probab=96.64 E-value=0.01 Score=49.35 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHH-hCcCCCcEEEEeCCCC---CEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHH
Q 025222 122 LPELHQLMTEAAEI-LNLEAPDLYVRQSPVP---NAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (256)
Q Consensus 122 ~p~L~~~l~~~~~~-l~i~~p~vyv~~~~~~---NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~ 192 (256)
..+|.+++++++.. ++.+-|.-...+...- .++- .....|.+++-+++..+++++..||+||++|+.
T Consensus 3 ~~~l~~l~~~~s~~~F~~~f~~~v~~n~RlrttgG~~~----l~~~~I~lnp~ll~~~~~~~l~~vv~HElcH~~ 73 (149)
T PRK04351 3 NQELQRLVEEISLEYFGKPFRHQAYFNKRLRTTGGRYL----LKDHHIEFNPKMLEEYGLEELIGIIKHELCHYH 73 (149)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEeccchhhhheee----cCCCeEEeCHHHHhhccHHHHHhhHHHHHHHHH
Confidence 35788899998864 6666443222222211 2221 245689999999999999999999999999984
No 22
>COG1451 Predicted metal-dependent hydrolase [General function prediction only]
Probab=96.46 E-value=0.016 Score=51.26 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHHH
Q 025222 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (256)
Q Consensus 125 L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~~ 200 (256)
+...++..++.+|.+...+.+-+-.. .+|-+.....|.++.-+. ..+++.+.+|++||++|++..+.-..+
T Consensus 125 l~~~~~~~~~~l~~~~~~~~ik~~k~----~WGScs~~~~i~~~~~l~-~~p~~~i~YVvvHELaHLke~nHs~~F 195 (223)
T COG1451 125 LEIRLKEYAKKLGVPPRAIKLKNMKR----RWGSCSKAGEIRFNWRLV-MAPEEVIDYVVVHELAHLKEKNHSKRF 195 (223)
T ss_pred HHHHHHHHHHHhCCCccceeeeeccc----eeeeecCCCcEEeehhhh-cCCHHHHHHHHHHHHHHHhhhhccHHH
Confidence 34455556667777766666664332 223222333788888877 689999999999999999987654443
No 23
>smart00731 SprT SprT homologues. Predicted to have roles in transcription elongation. Contains a conserved HExxH motif, indicating a metalloprotease function.
Probab=96.08 E-value=0.016 Score=47.71 Aligned_cols=67 Identities=21% Similarity=0.254 Sum_probs=43.7
Q ss_pred HHHHHHHHHH-HHhCcC--CCcEEEEeCCCCCEEEEeecC-CCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 124 ELHQLMTEAA-EILNLE--APDLYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 124 ~L~~~l~~~~-~~l~i~--~p~vyv~~~~~~NA~a~G~~~-~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
+|.+.++++- +.++-+ .|.+.... ....+ .|... ....|.++..+++..+++++..||.|||+|...
T Consensus 2 ~L~~~~~~~n~~~F~~~l~~~~i~w~~-r~~~~--~G~~~~~~~~I~ln~~l~~~~~~~~l~~~l~HEm~H~~~ 72 (146)
T smart00731 2 ELTQRLEDASLRVFGRKLPHPKVVWNK-RLRKT--GGRCLLKSAEIRLNPKLLTENGRDRLRETLLHELCHAAL 72 (146)
T ss_pred hHHHHHHHHHHHHHCCCCCCCEEEEeh-hhhhh--hHHhhcCCCEEEeCHHHHhhccHHHHHhhHHHHHHHHHH
Confidence 4555666655 334443 44343333 21111 22211 367899999999988999999999999999997
No 24
>PF13203 DUF2201_N: Putative metallopeptidase domain
Probab=95.79 E-value=0.026 Score=51.33 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=34.4
Q ss_pred EEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHHH
Q 025222 164 FVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLT 200 (256)
Q Consensus 164 ~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~~ 200 (256)
.|+++...+..++.+|+.+|++||+-|+..+|+...-
T Consensus 44 ~l~~nP~~~~~l~~~~~~~~l~HevlH~~~~H~~r~~ 80 (292)
T PF13203_consen 44 RLYYNPEFLESLSPEERVGLLLHEVLHCLLRHPWRRG 80 (292)
T ss_pred EEEECcHHHhcCCHHHHHHHHHHHHHHHHccchhhhc
Confidence 8999999999999999999999999999999986543
No 25
>PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT). SprT is described as a regulator of bolA gene in stationary phase []. The majority of members contain the metallopeptidase zinc binding signature which has a HExxH motif, however there is no evidence for them being metallopeptidases.
Probab=95.69 E-value=0.08 Score=43.45 Aligned_cols=30 Identities=23% Similarity=0.335 Sum_probs=28.6
Q ss_pred EEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 164 FVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 164 ~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.|.|+..+++..+++++..+|.|||.|...
T Consensus 44 ~I~ls~~~~~~~~~~~~~~tL~HEm~H~~~ 73 (157)
T PF10263_consen 44 EIRLSPKLLDRNPEEELIDTLLHEMAHAAA 73 (157)
T ss_pred EEEECHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 799999999988899999999999999987
No 26
>PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This entry contains peptidases belonging to MEROPS peptidase family U49 (Lit peptidase, clan U-). The Lit peptidase from Escherichia coli functions in bacterial cell death in response to infection by Enterobacteria phage T4. Following binding of Gol peptide to domains II and III of elongation factor Tu, the Lit peptidase cleaves domain I of the elongation factor. This prevents binding of guanine nucleotides, shuts down translation and leads to cell death.
Probab=94.98 E-value=0.022 Score=49.89 Aligned_cols=42 Identities=24% Similarity=0.139 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 025222 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~Al~~~ 246 (256)
.-+.+++.||++|+..+|.... -| .++.+.|.+||..|...+
T Consensus 99 ~A~~fil~HE~~Hv~~~h~~~~------------~~---------------~~~~~eE~~AD~~A~~~i 140 (206)
T PF10463_consen 99 CAIAFILLHELAHVVLGHEGDS------------SP---------------SQSIQEEKEADSYATEMI 140 (206)
T ss_pred HHHHHHHHHHHHHHHHcCcccc------------cc---------------chhHHHHHhhhHHHHHHH
Confidence 4678999999999999998765 11 234688888888888764
No 27
>COG2856 Predicted Zn peptidase [Amino acid transport and metabolism]
Probab=94.75 E-value=0.034 Score=48.90 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=27.2
Q ss_pred cCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 159 SGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 159 ~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
...+|.|+++.. .+++.-++++||||||+..+
T Consensus 55 ~~~~~~I~iN~n----~~~~r~rFtlAHELGH~llH 86 (213)
T COG2856 55 DEEKPVIYINAN----NSLERKRFTLAHELGHALLH 86 (213)
T ss_pred eccCceEEEeCC----CCHHHHHHHHHHHHhHHHhc
Confidence 346689999987 38899999999999999864
No 28
>PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [].
Probab=94.71 E-value=0.071 Score=46.60 Aligned_cols=51 Identities=22% Similarity=0.191 Sum_probs=42.5
Q ss_pred EEeCCCCCEEEEeecCCCCEEEECHHHHhcCC-----HHHHHHHHHHHHHHHHhcch
Q 025222 145 VRQSPVPNAYTLAISGKKPFVVVHTSLVELLT-----RKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 145 v~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~-----~~EL~aVlaHElgHi~~~H~ 196 (256)
++++...-|++.| ......|.+++..++... .+|+.+||-||+.|+-+..+
T Consensus 57 ~~~~~~gVA~t~g-d~~~~~I~~S~~~i~~~~~~~~~~~Ei~Gvl~HE~~H~~Q~~~ 112 (205)
T PF04450_consen 57 ILDDMDGVAYTSG-DDDHKEIHFSARYIAKYPADGDVRDEIIGVLYHEMVHCWQWDG 112 (205)
T ss_pred EEECCCeeEEEec-CCCccEEEEeHHHHhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 4666677889988 456779999999999875 35999999999999998654
No 29
>PRK04860 hypothetical protein; Provisional
Probab=94.38 E-value=0.15 Score=42.83 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhCcC--CCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 125 LHQLMTEAAEILNLE--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 125 L~~~l~~~~~~l~i~--~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
+..-++...+.++.+ .|++..-.-... |-...+ ...-|-++.-+++..+++++..||.||++|+..
T Consensus 9 ~~~~~~~a~~~f~~~f~~p~~~f~~R~rt-aG~~~l--~~~~I~~Np~ll~~~~~~~l~~~v~HEl~H~~~ 76 (160)
T PRK04860 9 LRECLAQANLYFKRTFPEPKVSYTQRGTS-AGTAWL--QSNEIRLNPVLLLENQQAFIDEVVPHELAHLLV 76 (160)
T ss_pred HHHHHHHHHHHhCCCCCCCEEEEeecchh-hcchhH--hcCCeeeCHHHHhhCcHHHHHhHHHHHHHHHHH
Confidence 344444455556655 455554332221 322223 345699999999989999999999999999874
No 30
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=93.98 E-value=0.14 Score=37.91 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=38.5
Q ss_pred HHHHHHhCcCCCcEEEEeC---------CCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 130 TEAAEILNLEAPDLYVRQS---------PVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 130 ~~~~~~l~i~~p~vyv~~~---------~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
.++...+|.+...|-|..+ ....|||.| ..|++..+-.+ .+..+=..+|+||++|+.+.
T Consensus 8 ~~~e~~~G~dl~~Vrvh~~~~a~~~~~~~~A~A~T~G-----~~I~f~~g~~~-~~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 8 SRLERAFGADLSDVRVHTGPAASRAAAALGARAFTVG-----NDIYFAPGKYN-PDSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred HHHHHHhCCCccceEEEeCCchhhhhhccCCeEEEEC-----CEEEEcCCCcC-CCCCCcchhHhHHHHHHHhh
Confidence 3445567777666666554 235677765 26999777432 34445567999999999864
No 31
>PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.
Probab=93.87 E-value=0.28 Score=42.27 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCcCCCcEEEEeCCCCCEE------EEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 124 ELHQLMTEAAEILNLEAPDLYVRQSPVPNAY------TLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 124 ~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~------a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
.+.+.+.++.+.+..+.-.|++......|.+ ..|..+....|.+.- +-...+.++|.+++|||+-|..+.
T Consensus 4 ~i~~~~~~~~~~~~~~~i~v~i~p~~~~~~~~~~~~g~~g~~~~~~~i~l~~-~~~~~~~~~l~~~iaHE~hH~~r~ 79 (195)
T PF10026_consen 4 IIEEALEKSIELLPGPDIPVFIFPADPENPFLIPELGGKGGGAIPGYIFLFL-LPNDYSLEELPALIAHEYHHNCRY 79 (195)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEeccCCCcccccccCcccccCCCCEEEEEe-cCCcccHHHHHHHHHHHHHHHHHH
Confidence 3456666777766655334665442222211 112222344677665 444568899999999999999753
No 32
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=92.82 E-value=6.2 Score=35.00 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHH
Q 025222 127 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVW 198 (256)
Q Consensus 127 ~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~ 198 (256)
+..+.+-++.|+..-+|...+..-..-| ++.++.|.++++..+.-+- -=.+|-|||+||-.++..-|
T Consensus 41 e~Ar~iL~~~gl~~V~Ve~~~G~LtDHY----dP~~k~vrLS~~vy~~~Si-aAvaVAAHEvGHAiQ~a~~Y 107 (222)
T PF04298_consen 41 EVARHILDRNGLSDVRVERVPGELTDHY----DPRNKVVRLSEDVYNGRSI-AAVAVAAHEVGHAIQHAEGY 107 (222)
T ss_pred HHHHHHHHHCCCCCeeEEEeCCCCCCCc----CCCCCEEEeCCccCCCCCH-HHHHHHHHHHhHHHhccccC
Confidence 3455566677876444555544222323 4567789999985543332 33478999999999876533
No 33
>COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only]
Probab=92.46 E-value=0.35 Score=40.31 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHhCcC--CCcEEEEeCC--CCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 123 PELHQLMTEAAEILNLE--APDLYVRQSP--VPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 123 p~L~~~l~~~~~~l~i~--~p~vyv~~~~--~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.+|.+.++++.....-+ .|+++.-.-. .-.|| + .+.-|-++.-+++...++.+..|+.|||+|+.-
T Consensus 5 ~~L~~~~~~as~~~~r~~~~p~~~~n~Rg~taG~ay---L--~~~~I~lNP~ll~en~~~f~~~vV~HELaHl~l 74 (156)
T COG3091 5 RKLQQCVEQASLKFFRKFFRPKASYNQRGRTAGGAY---L--LKSEIRLNPKLLEENGEDFIEQVVPHELAHLHL 74 (156)
T ss_pred HHHHHHHHHHHHHhcCCCCCcceehhhhhhhcchhh---c--cccccccCHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 46777888888776644 5665543211 12223 2 233799999999999999999999999999873
No 34
>PRK09672 phage exclusion protein Lit; Provisional
Probab=91.78 E-value=0.17 Score=46.56 Aligned_cols=42 Identities=21% Similarity=0.111 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 025222 178 KELQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALLVS 246 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~~H~~~~~l~~~L~~~~~~~p~lg~~~~~~l~~~l~~~sR~~E~~ADr~Al~~~ 246 (256)
.-++.|+.||++|+..+|..... ..|+++.|.+||.+|...+
T Consensus 163 ~A~a~i~~HEiaHv~~~h~~~~~---------------------------~e~s~~eE~eaDs~At~~i 204 (305)
T PRK09672 163 CALAWILLHEIAHVEFQHSSLES---------------------------NEDSIQEEKEADSYATNWL 204 (305)
T ss_pred HHHHHHHHHHHHHHHhccccccC---------------------------chHHHHHHHHHHHHHHHHH
Confidence 56899999999999999987610 2456789999999998765
No 35
>PF14247 DUF4344: Domain of unknown function (DUF4344)
Probab=90.64 E-value=1.6 Score=38.60 Aligned_cols=58 Identities=19% Similarity=0.263 Sum_probs=38.7
Q ss_pred HHHHhCcCCCcEEE--EeCCCCCEEEEeecCCCCEEEECHHHHhcC---------CH--------HHHHHHHHHHHHHHH
Q 025222 132 AAEILNLEAPDLYV--RQSPVPNAYTLAISGKKPFVVVHTSLVELL---------TR--------KELQAVLAHELGHLK 192 (256)
Q Consensus 132 ~~~~l~i~~p~vyv--~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L---------~~--------~EL~aVlaHElgHi~ 192 (256)
+-..+.+|.| +.| .+....|||- .+....|.+.-.+++.. ++ +-+.+++-||+||-.
T Consensus 29 in~~f~LP~~-l~i~~~~CGe~nA~y---dPe~~~I~iCYEf~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~HE~GHAl 104 (220)
T PF14247_consen 29 INDYFPLPRD-LTIRFAECGEDNAFY---DPENRSITICYEFVDEILDRFAKANDPDEEYGQAAIGNVLFTLYHELGHAL 104 (220)
T ss_pred HhhcCCCCCC-eEEEEeecCCCCCcc---CCCCCEEEECHHHHHHHHHHHHhCCcCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555 333 3467899984 55778899998887632 11 246789999999976
Q ss_pred h
Q 025222 193 C 193 (256)
Q Consensus 193 ~ 193 (256)
-
T Consensus 105 I 105 (220)
T PF14247_consen 105 I 105 (220)
T ss_pred H
Confidence 3
No 36
>TIGR00181 pepF oligoendopeptidase F. This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.
Probab=89.04 E-value=0.3 Score=48.82 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=31.6
Q ss_pred EeCCCCCEEEEeecCCCCEEEEC-HHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 146 RQSPVPNAYTLAISGKKPFVVVH-TSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 146 ~~~~~~NA~a~G~~~~~~~Ivl~-~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
.++....||++|..+..|+|.++ ++ +-+++ ..|+||+||-.|.
T Consensus 349 r~gK~~Ga~~~~~~~~~p~il~N~~~-----~~~dv-~TLaHElGHa~H~ 392 (591)
T TIGR00181 349 NKGKRSGAYSIGGYKVKPYILMNWDG-----TLNSV-FTLAHELGHSMHS 392 (591)
T ss_pred CCCCCCCcccCCCCCCCCeEEEecCC-----CcchH-HHHHHHhhhHHHH
Confidence 45667899999987778999876 22 22333 4799999999854
No 37
>COG1164 Oligoendopeptidase F [Amino acid transport and metabolism]
Probab=88.20 E-value=0.64 Score=46.90 Aligned_cols=49 Identities=31% Similarity=0.512 Sum_probs=35.7
Q ss_pred CcEEEEeCCCCCEEEEeecC-CCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 141 PDLYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 141 p~vyv~~~~~~NA~a~G~~~-~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
.+++-..+..+.||+.|... .+|+|.++-. . +... ..+|+||+||-.|.
T Consensus 345 iD~~~~~gKrsGaYs~~~~~~~~p~IlmN~~---g-t~~d-V~TLaHElGHs~Hs 394 (598)
T COG1164 345 IDVYPRKGKRSGAYSIGFYKGDHPFILMNYD---G-TLRD-VFTLAHELGHSVHS 394 (598)
T ss_pred eeccCCCCCCCCcccCCCCCCCCCeEEEeCC---C-chhH-HHHHHHHccHHHHH
Confidence 35555667889999999876 8899987643 1 2233 35899999999864
No 38
>COG4900 Predicted metallopeptidase [General function prediction only]
Probab=87.32 E-value=1.9 Score=34.24 Aligned_cols=72 Identities=25% Similarity=0.318 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHhCcC---CCcEEEEeCCC--CCEEE--Eeec-------CCCC--EEEECHHHHhcCCHHHHHHHHH
Q 025222 122 LPELHQLMTEAAEILNLE---APDLYVRQSPV--PNAYT--LAIS-------GKKP--FVVVHTSLVELLTRKELQAVLA 185 (256)
Q Consensus 122 ~p~L~~~l~~~~~~l~i~---~p~vyv~~~~~--~NA~a--~G~~-------~~~~--~Ivl~~gLl~~L~~~EL~aVla 185 (256)
.++..+.++.+.-++|++ ..+++++-++. ..|++ +|.+ +-+| .|-+-+.=++.|+-+|---|+.
T Consensus 6 ~~dve~~~~~~V~~lgLdyi~~~rv~vVys~gS~~~A~ARIwg~pki~~e~lglnP~YviEl~sekF~rLs~~ekvKvii 85 (133)
T COG4900 6 LADVEADIKNAVVRLGLDYIFQVRVVVVYSPGSHSKAVARIWGIPKIFQEVLGLNPVYVIELLSEKFKRLSCAEKVKVII 85 (133)
T ss_pred cccHHHHHHHHHHHhCcceeeeeeEEEEECCCCcceehhhhhcccHHHHHHhCCCCeeeeeeehhhcCCCChHHHHHHHH
Confidence 355667788888888876 45777776543 23332 2221 1223 4555566577888889888999
Q ss_pred HHHHHHHh
Q 025222 186 HELGHLKC 193 (256)
Q Consensus 186 HElgHi~~ 193 (256)
||+.||-.
T Consensus 86 HEllHIP~ 93 (133)
T COG4900 86 HELLHIPA 93 (133)
T ss_pred HHHhcCcc
Confidence 99999974
No 39
>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.
Probab=86.84 E-value=2.1 Score=34.78 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=23.7
Q ss_pred CCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 151 PNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 151 ~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.-|.+.|. .+.+|.+...--+..+.-- |.+||+||+..
T Consensus 53 sya~~~g~--G~G~I~l~~~~~qgy~~~R---IaaHE~GHiLG 90 (132)
T PF02031_consen 53 SYASTDGL--GSGYIFLDYQQNQGYNSTR---IAAHELGHILG 90 (132)
T ss_dssp -EEEE-SS--S-EEEEEEHHHHHHS-HHH---HHHHHHHHHHT
T ss_pred cccccCCC--CcEEEEechHHhhCCccce---eeeehhccccC
Confidence 44555554 5679999876444444333 89999999984
No 40
>COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=86.10 E-value=0.15 Score=50.61 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=35.6
Q ss_pred cEEEEeCCCCCEEEEeecCCCCEEEECHHHHhc--CCHH--------HHHHHHHHHHHHHHh
Q 025222 142 DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL--LTRK--------ELQAVLAHELGHLKC 193 (256)
Q Consensus 142 ~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~--L~~~--------EL~aVlaHElgHi~~ 193 (256)
.-+.+.....|||- ++.+.-||++.++|+. .+++ -+-+|||||+||---
T Consensus 442 ~eW~M~pq~VNAYY---np~~N~IVFPAAILQ~PFfd~ea~~a~NYGgIGaVIgHEI~HgFD 500 (654)
T COG3590 442 DEWEMPPQTVNAYY---NPQKNEIVFPAAILQAPFFDPEADSAANYGGIGAVIGHEIGHGFD 500 (654)
T ss_pred hhcCCCHHHhhhhc---CCCCceEeeeHHhcCCCCCCCCcchhhcccCccceehhhhccccc
Confidence 33445555689985 4567789999999985 2322 388999999999763
No 41
>COG2321 Predicted metalloprotease [General function prediction only]
Probab=85.50 E-value=2 Score=39.18 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=41.6
Q ss_pred HHHHHHHHHhCc--CCCcEEEEeCCCC-----CEEEEe--ecCCCCEEEECHHHHhcCC-------HHHHHHHHHHHHHH
Q 025222 127 QLMTEAAEILNL--EAPDLYVRQSPVP-----NAYTLA--ISGKKPFVVVHTSLVELLT-------RKELQAVLAHELGH 190 (256)
Q Consensus 127 ~~l~~~~~~l~i--~~p~vyv~~~~~~-----NA~a~G--~~~~~~~Ivl~~gLl~~L~-------~~EL~aVlaHElgH 190 (256)
+.+..+-+..+- ..|++.++....- +--++| .++...++++.....+.|+ +=.-++|+|||.||
T Consensus 98 d~W~~if~~~~~~Y~~Ptlvlf~~~v~t~CG~assasGPFYCP~D~kvYlDlsFf~~m~~~fga~GdfAqaYViAHEVGH 177 (295)
T COG2321 98 DTWMQIFQESGRTYQKPTLVLFSGQVRTGCGFASSASGPFYCPADTKVYLDLSFFDEMKTKFGASGDFAQAYVIAHEVGH 177 (295)
T ss_pred HHHHHHHHHhcccccCCeEEEecCccccCcCCCCcCCCCeecCCCceEEEehhHHHHHHHHhcCCccHHHHHHHHhhhhH
Confidence 344444444443 3687777653321 111222 2345678999999988774 23578999999999
Q ss_pred HHh
Q 025222 191 LKC 193 (256)
Q Consensus 191 i~~ 193 (256)
..+
T Consensus 178 HVQ 180 (295)
T COG2321 178 HVQ 180 (295)
T ss_pred HHH
Confidence 875
No 42
>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57. The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].
Probab=84.92 E-value=1.1 Score=39.37 Aligned_cols=35 Identities=20% Similarity=0.438 Sum_probs=26.0
Q ss_pred CEEEECHHHHhcCCHHHHHHHHHHHHHHHH-hcchHHH
Q 025222 163 PFVVVHTSLVELLTRKELQAVLAHELGHLK-CDHGVWL 199 (256)
Q Consensus 163 ~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~-~~H~~~~ 199 (256)
+.|.| .+ ++..+.+..+.||.|||||.. -||.=|.
T Consensus 118 ~~I~I-~~-~~~~~~~~~~hvi~HEiGH~IGfRHTD~~ 153 (211)
T PF12388_consen 118 KFIQI-YG-LSNYSVNVIEHVITHEIGHCIGFRHTDYF 153 (211)
T ss_pred ceEEE-Ee-cCCCchhHHHHHHHHHhhhhccccccCcC
Confidence 35666 33 456788889999999999987 3676554
No 43
>PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase. Since the WLM domain contains all known active site residues of zincins, it is predicted to be a catalytically active peptidase domain. The WLM domain is a eukaryotic domain represented in plants, fungi, Plasmodium, and kinetoplastids. By contrast, it is absent in animals, Cryptosporidium, and Microsporidia, suggesting that it has been lost on multiple occasions during the evolution of eukaryotes. The WLM domain is found either in stand-alone form or in association with other domains such as the RanBP2 zinc finger , the ubiquitin domain, or the PUB/PUG domain. This domain could function as a specific de-SUMOylating domain of distinct protein complexes in the nucleus and the cytoplasm []. It has been suggested to form a segregated alpha/beta structure with eight helices and five strands. Proteins containign this domain include yeast WSS1 (a weak suppressor of the Ub-related protein SMT3), and various putative metalloproteases from plant and fungal species.
Probab=84.08 E-value=3.1 Score=35.84 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=22.6
Q ss_pred EEEECHHH-HhcCCHHHHHHHHHHHHHHHHhcc
Q 025222 164 FVVVHTSL-VELLTRKELQAVLAHELGHLKCDH 195 (256)
Q Consensus 164 ~Ivl~~gL-l~~L~~~EL~aVlaHElgHi~~~H 195 (256)
.|.+-+.- -.-++-+++..|+-|||+|+.++.
T Consensus 65 ~lrLR~~~~~~fl~~~~i~~t~lHELaH~~~~~ 97 (186)
T PF08325_consen 65 CLRLRTPDDGGFLPYETILGTMLHELAHNVHGP 97 (186)
T ss_pred EEEeCCCCCCCEeeHHHHHHHHHHHHHhcccCC
Confidence 34444433 223578999999999999999653
No 44
>TIGR02289 M3_not_pepF oligoendopeptidase, M3 family. This family consists of probable oligoendopeptidases in the M3 family, related to lactococcal PepF and group B streptococcal PepB (TIGR00181) but in a distinct clade with considerable sequence differences. The likely substrate is small peptides and not whole proteins, as with PepF, but members are not characterized and the activity profile may differ. Several bacteria have both a member of this family and a member of the PepF family.
Probab=84.00 E-value=1.3 Score=44.07 Aligned_cols=65 Identities=28% Similarity=0.352 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCcCC------------CcEEEEeCCCCCEEEEeecC-CCCEEEEC-HHHHhcCCHHHHHHHHHHHHH
Q 025222 124 ELHQLMTEAAEILNLEA------------PDLYVRQSPVPNAYTLAISG-KKPFVVVH-TSLVELLTRKELQAVLAHELG 189 (256)
Q Consensus 124 ~L~~~l~~~~~~l~i~~------------p~vyv~~~~~~NA~a~G~~~-~~~~Ivl~-~gLl~~L~~~EL~aVlaHElg 189 (256)
++.+.+.++...++... -+++-.++..+.||++++.+ ..|+|.++ ++ +.+++ .+|+||+|
T Consensus 273 ~~~~~~~~~~~~l~~~~~e~~~~~~~~~~iD~~~r~gK~~Gayc~~~~~~~~P~I~~Nf~~-----t~~dv-~TL~HElG 346 (549)
T TIGR02289 273 FLLEKAEKMYKELSLEFYEFFNFMREKNLLDLESRKGKAAGGYCTYLPKYKAPFIFSNFNG-----TSGDI-DVLTHEAG 346 (549)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhcCccccCCCCCCCCCcccCCCCCCCCcEEEEeCCC-----ChhHH-HHHHHHhh
Confidence 45556665555554321 12233456678999998654 57888765 22 34444 37899999
Q ss_pred HHHhc
Q 025222 190 HLKCD 194 (256)
Q Consensus 190 Hi~~~ 194 (256)
|..|.
T Consensus 347 Ha~H~ 351 (549)
T TIGR02289 347 HAFHV 351 (549)
T ss_pred HHHHH
Confidence 99854
No 45
>PF13485 Peptidase_MA_2: Peptidase MA superfamily
Probab=83.55 E-value=1.6 Score=33.32 Aligned_cols=32 Identities=31% Similarity=0.164 Sum_probs=23.2
Q ss_pred CCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcch
Q 025222 162 KPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 162 ~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~ 196 (256)
.+.|++.. +.-+++.+..+++||++|......
T Consensus 10 ~~~i~~~~---~~~~~~~~~~~l~HE~~H~~~~~~ 41 (128)
T PF13485_consen 10 FNRIVVYF---QGSDEDWLDRVLAHELAHQWFGNY 41 (128)
T ss_pred CCEEEEec---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44566543 345778889999999999986554
No 46
>COG2738 Predicted Zn-dependent protease [General function prediction only]
Probab=80.72 E-value=12 Score=32.72 Aligned_cols=67 Identities=15% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchHHHHH
Q 025222 130 TEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTF 201 (256)
Q Consensus 130 ~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~~~~l 201 (256)
+.+...-|+..-++-..+..-.. -.+++++.+-+++.-...-+- .=.+|-|||.||-.+++.-|..+
T Consensus 47 r~iLd~nGl~dV~Ve~v~G~LTD----HYDP~~kvvrLSe~~y~g~Si-a~~aVAAHEVGHAiQd~~~Y~~L 113 (226)
T COG2738 47 RMILDENGLYDVPVEEVPGTLTD----HYDPRRKVVRLSEANYYGPSI-AAIAVAAHEVGHAIQDQEDYAFL 113 (226)
T ss_pred HHHHhhcCCccceeeeecCCccc----ccChhhheeeccccccCCccH-HHHHHHHHHhhHHHhhhcccHHH
Confidence 33444556652224444332222 124567788888875543333 34579999999999877655443
No 47
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family. The M3 family of metallopeptidases contains several distinct clades. Oligoendopeptidase F as characterized in Lactococcus, the functionally equivalent oligoendopeptidase B of group B Streptococcus, and closely related sequences are described by TIGR00181. The present family is quite similar but forms a distinct clade, and a number of species have one member of each. A greater sequence difference separates members of TIGR02289, probable oligoendopeptidases of the M3 family that probably should not be designated PepF.
Probab=80.50 E-value=2 Score=43.02 Aligned_cols=47 Identities=28% Similarity=0.420 Sum_probs=31.4
Q ss_pred EEEEeCCCCCEEEEeecC-CCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 143 LYVRQSPVPNAYTLAISG-KKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 143 vyv~~~~~~NA~a~G~~~-~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
++-.++....||++|+.+ ..|+|.++-. + +-+++ ..|+||+||-.|.
T Consensus 342 ~~~r~gK~~Ga~~~~~~~~~~p~i~~N~~--~--~~~~v-~TL~HE~GHa~H~ 389 (587)
T TIGR02290 342 AEPRPGKRGGAFCTGFPPSKEPRVLMNYD--G--SRRDV-STLAHELGHAYHS 389 (587)
T ss_pred cCCCCCCCCCcccCCCCCCCCCEEEEecC--C--CchhH-HHHHHHhhHHHHH
Confidence 444556778999988654 4588877622 1 23343 4689999999964
No 48
>PF09768 Peptidase_M76: Peptidase M76 family; InterPro: IPR019165 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. Mitochondrial inner membrane protease ATP23 has two roles in the assembly of mitochondrial ATPase. Firstly, it acts as a protease that removes the N-terminal 10 residues of mitochondrial ATPase CF(0) subunit 6 (ATP6) at the intermembrane space side. Secondly, it is involved in the correct assembly of the membrane-embedded ATPase CF(0) particle, probably mediating association of ATP6 with the subunit 9 ring [, ].; GO: 0004222 metalloendopeptidase activity
Probab=80.24 E-value=3 Score=35.53 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHHHhCcC-CC-cEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHH
Q 025222 122 LPELHQLMTEAAEILNLE-AP-DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (256)
Q Consensus 122 ~p~L~~~l~~~~~~l~i~-~p-~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~ 192 (256)
.|.+.-+++++. ++|-+ .+ ..+....-..+ ..-|+.+.++-|+|-..-+ -+..++.-+|+|||-|.-
T Consensus 15 sp~v~fl~~~~~-~~gc~~~~~~~i~c~~C~~~-~~Ggf~p~~~~I~lC~N~~--~~~~~l~~~l~HELIHay 83 (173)
T PF09768_consen 15 SPTVRFLMEALK-KLGCPPVPPRHIKCEPCDSS-VSGGFDPSKKGIVLCQNRI--RSQGHLEDTLTHELIHAY 83 (173)
T ss_pred CcHHHHHHHHHH-HcCCCCCCCCCeEEEECcCC-CcCCccCCCCCEEEeeCCC--CCHHHHHHHHHHHHHHHH
Confidence 455555555544 46655 33 22222211111 3445555345566655533 388999999999999987
No 49
>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.
Probab=78.52 E-value=3.1 Score=39.35 Aligned_cols=43 Identities=35% Similarity=0.574 Sum_probs=28.4
Q ss_pred EeCCCCCEEEEeec-CCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 146 RQSPVPNAYTLAIS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 146 ~~~~~~NA~a~G~~-~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.++....||++++. +..|+|+++-. . +-++ ...++||+||..|
T Consensus 192 r~gK~~gaf~~~~~~~~~p~i~~n~~--~--~~~~-v~tl~HE~GHa~h 235 (427)
T cd06459 192 RKGKRSGAYCTGLPPGKHPFILMNFN--G--TLDD-VFTLAHELGHAFH 235 (427)
T ss_pred CCCCCCCeecCCCCCCCCCeEEecCC--C--Chhh-HHHHHHHhhHHHH
Confidence 44556789998875 45677766532 1 3344 3568999999764
No 50
>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1. A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=76.77 E-value=1.7 Score=35.58 Aligned_cols=17 Identities=47% Similarity=0.632 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025222 177 RKELQAVLAHELGHLKC 193 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~~ 193 (256)
..++..|+.||+||...
T Consensus 101 ~~~~~~~~~HEiGHaLG 117 (156)
T cd04279 101 AENLQAIALHELGHALG 117 (156)
T ss_pred chHHHHHHHHHhhhhhc
Confidence 56899999999999983
No 51
>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site.; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....
Probab=76.54 E-value=1.8 Score=34.84 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=21.1
Q ss_pred CEEEECHHHHhc--CCHHHHHHHHHHHHHHHHh-cch
Q 025222 163 PFVVVHTSLVEL--LTRKELQAVLAHELGHLKC-DHG 196 (256)
Q Consensus 163 ~~Ivl~~gLl~~--L~~~EL~aVlaHElgHi~~-~H~ 196 (256)
..|.+...-.-. .+..++..|+.||+||... +|.
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHaLGL~H~ 122 (154)
T PF00413_consen 86 GDIHFNDDESWTIDDSGNDLQSVAIHEIGHALGLDHS 122 (154)
T ss_dssp TEEEEETTSHEESSSSSEEHHHHHHHHHHHHTTBESS
T ss_pred ccccccccccchhhhhhhhhhhhhhhccccccCcCcC
Confidence 345555432111 2345799999999999973 443
No 52
>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily. This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.
Probab=76.02 E-value=1.7 Score=35.42 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=21.4
Q ss_pred CCEEEECHHHHhc----CCHHHHHHHHHHHHHHHHh
Q 025222 162 KPFVVVHTSLVEL----LTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 162 ~~~Ivl~~gLl~~----L~~~EL~aVlaHElgHi~~ 193 (256)
+..|.+....+.. .+.+++.+++.||+||...
T Consensus 72 ~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLG 107 (165)
T cd04268 72 TGEILLARVYLYSSFVEYSGARLRNTAEHELGHALG 107 (165)
T ss_pred CccEEeeEEEEchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456655543321 2346799999999999983
No 53
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.47 E-value=4.5 Score=37.78 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=31.8
Q ss_pred EEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchH
Q 025222 164 FVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 164 ~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~ 197 (256)
.++++...+..++.+++.|.|-||+-|+...|..
T Consensus 53 ~~y~NPei~~~~p~~~~~aLl~HEV~Hi~l~Hi~ 86 (396)
T COG3864 53 TMYFNPEIFLNCPISEMKALLKHEVYHIMLNHIK 86 (396)
T ss_pred EEEeCHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998883
No 54
>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily. TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.
Probab=75.11 E-value=2.1 Score=38.20 Aligned_cols=18 Identities=50% Similarity=0.495 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 025222 176 TRKELQAVLAHELGHLKC 193 (256)
Q Consensus 176 ~~~EL~aVlaHElgHi~~ 193 (256)
.....+.++||||||-..
T Consensus 163 ~~~~~a~t~AHElGHnlG 180 (244)
T cd04270 163 PTKESDLVTAHELGHNFG 180 (244)
T ss_pred chhHHHHHHHHHHHHhcC
Confidence 345678999999999874
No 55
>PF01433 Peptidase_M1: Peptidase family M1 This is family M1 in the peptidase classification.; InterPro: IPR014782 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M1 (clan MA(E)), the type example being aminopeptidase N from Homo sapiens (Human). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Membrane alanine aminopeptidase (3.4.11.2 from EC) is part of the HEXXH+E group; it consists entirely of aminopeptidases, spread across a wide variety of species []. Functional studies show that CD13/APN catalyzes the removal of single amino acids from the amino terminus of small peptides and probably plays a role in their final digestion; one family member (leukotriene-A4 hydrolase) is known to hydrolyse the epoxide leukotriene-A4 to form an inflammatory mediator []. This hydrolase has been shown to have aminopeptidase activity [], and the zinc ligands of the M1 family were identified by site-directed mutagenesis on this enzyme [] CD13 participates in trimming peptides bound to MHC class II molecules [] and cleaves MIP-1 chemokine, which alters target cell specificity from basophils to eosinophils []. CD13 acts as a receptor for specific strains of RNA viruses (coronaviruses) which cause a relatively large percentage of upper respiratory trace infections. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 2XQ0_A 2XPY_A 2XPZ_A 3SE6_B 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A ....
Probab=72.92 E-value=14 Score=34.34 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhCcC--CCcEEEEeCCC--CCEEEEeecCCCCEEEECHHHHh-c--C----CHHHHHHHHHHHHHHHHh
Q 025222 125 LHQLMTEAAEILNLE--APDLYVRQSPV--PNAYTLAISGKKPFVVVHTSLVE-L--L----TRKELQAVLAHELGHLKC 193 (256)
Q Consensus 125 L~~~l~~~~~~l~i~--~p~vyv~~~~~--~NA~a~G~~~~~~~Ivl~~gLl~-~--L----~~~EL~aVlaHElgHi~~ 193 (256)
..+.++-+.+.+|++ .+++-++.-|. .+++. .-..|.+....+- . . ...++..++|||++|.--
T Consensus 234 ~~~~l~~~~~~~g~~yp~~k~~~v~~p~~~~~~me-----~~g~i~~~~~~l~~~~~~~~~~~~~~~~~~iahElahqWf 308 (390)
T PF01433_consen 234 APKALEYYEEYFGIPYPFKKLDIVAVPDFPFGGME-----NWGLITYRESYLLYDPDISTIGDKQEIASLIAHELAHQWF 308 (390)
T ss_dssp HHHHHHHHHHHHTS--SSSEEEEEEEST-SSSEE-------TTEEEEEGGGTS-STTTS-HHHHHHHHHHHHHHHHTTTB
T ss_pred hHHHHHHHHhhccccceecceeEEEEecccccccc-----ccccccccccccccCcccccchhhhhhHHHHHHHHHHHHh
Confidence 344555556667865 34444444332 33332 2346666666431 1 1 135789999999999877
Q ss_pred cch
Q 025222 194 DHG 196 (256)
Q Consensus 194 ~H~ 196 (256)
|+.
T Consensus 309 Gn~ 311 (390)
T PF01433_consen 309 GNL 311 (390)
T ss_dssp TTT
T ss_pred ccC
Confidence 654
No 56
>cd06460 M32_Taq Peptidase family M32 is a subclass of metallocarboxypeptidases which are distributed mainly in bacteria and archaea, and contain a HEXXH motif that coordinates a divalent cation such as Zn2+ or Co2+, so far only observed in the active site of neutral metallopeptidases but not in carboxypeptidases. M32 includes the thermostable carboxypeptidases (E.C. 3.4.17.19) from Thermus aquaticus (TaqCP) and Pyrococcus furiosus (PfuCP), which have broad specificities toward a wide range of C-terminal substrates that include basic, aromatic, neutral and polar amino acids. These enzymes have a similar fold to the M3 peptidases such as neurolysin and the M2 angiotensin converting enzyme (ACE). Novel peptidases from protozoa Trypanosoma cruzi, a causative agent of Chagas' disease, and Leishmania major, a parasite that causes leishmaniasis, are the first eukaryotic M32 enzymes identified so far, thus making these enzymes an attractive potential target for drug development against these o
Probab=71.28 E-value=34 Score=32.97 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcch
Q 025222 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 125 L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~ 196 (256)
-.+..+++++.+|.+..+-++-.++ ++|++|+++..++| ++..-+ -+--.=..-++||+||-.+...
T Consensus 109 Q~~~~~~~~~~~g~df~~griD~s~--hpF~~~~~~~dvRI--tt~y~~-~d~~~~l~t~iHE~GHalye~~ 175 (396)
T cd06460 109 QEALGRELLEALGFDFDRGRLDVSA--HPFTGGLGPGDVRI--TTRYDE-NDFRSALFSTIHETGHALYEQG 175 (396)
T ss_pred HHHHHHHHHHHhCCcccCCeeecCC--CCCCCCCCCCCceE--EeeeCC-cchHHHHHHHHHHhhHHHHHhc
Confidence 3455667888888775444443333 45998875555555 332111 1111222357899999987663
No 57
>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B ....
Probab=70.84 E-value=2.3 Score=35.95 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHHHHH
Q 025222 176 TRKELQAVLAHELGHLK 192 (256)
Q Consensus 176 ~~~EL~aVlaHElgHi~ 192 (256)
+...-.-++|||+||..
T Consensus 138 ~~~~~~~~~AHEiGH~l 154 (196)
T PF13688_consen 138 PTYNGAITFAHEIGHNL 154 (196)
T ss_dssp -HHHHHHHHHHHHHHHT
T ss_pred CCCceehhhHHhHHHhc
Confidence 45677789999999987
No 58
>PF14891 Peptidase_M91: Effector protein
Probab=70.77 E-value=15 Score=30.87 Aligned_cols=16 Identities=38% Similarity=0.235 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 025222 178 KELQAVLAHELGHLKC 193 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~ 193 (256)
..=..+|+|||+|..+
T Consensus 101 ~~p~v~L~HEL~HA~~ 116 (174)
T PF14891_consen 101 RPPFVVLYHELIHAYD 116 (174)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456799999999983
No 59
>PF01432 Peptidase_M3: Peptidase family M3 This Prosite motif covers only the active site. This family belongs to family M3 of the peptidase classification.; InterPro: IPR001567 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M3 (clan MA(E)), subfamilies M3A and M3B. The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The Thimet oligopeptidase family, is a large family of archaeal, bacterial and eukaryotic oligopeptidases that cleave medium sized peptides. The group contains: mitochondrial intermediate peptidase (3.4.24.59 from EC) Neurolysin, mitochondrial precursor, (3.4.24.16 from EC) Thimet oligopeptidase (3.4.24.15 from EC) Dipeptidyl carboxypeptidase (3.4.15.5 from EC) Oligopeptidase A (3.4.24.70 from EC) Oligoendopeptidase F ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QR4_B 3CE2_A 1Y79_1 2H1J_A 2H1N_A 2O36_A 1S4B_P 2O3E_A 1I1I_P.
Probab=69.37 E-value=4.7 Score=38.85 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=26.2
Q ss_pred CCCCCEEEEeecCC-------CCEEEECHHHHh-------cCCHHHHHHHHHHHHHHHHh
Q 025222 148 SPVPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 148 ~~~~NA~a~G~~~~-------~~~Ivl~~gLl~-------~L~~~EL~aVlaHElgHi~~ 193 (256)
+....|++.++.+. .|..+|...+-. .|+-+++ ..|+||+||..|
T Consensus 197 gK~~ga~~~~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v-~tLfHE~GHa~H 255 (458)
T PF01432_consen 197 GKRSGAFCFTLRPSRSDGERQLPVPYIFCNFTGPSAGKPSLLSHDDV-ETLFHEFGHAMH 255 (458)
T ss_dssp TS-SS-EEEEEEC-BTTSTCECEEEEEEEEE-S-BTTC--B-SHHHH-HHHHHHHHHHHH
T ss_pred CCCCCceeCCccCccccccCCCCceEEEecCCCCCCCCCCccChhhH-HHHHHHHhHHHH
Confidence 44578888887542 144444333322 3467777 578999999986
No 60
>cd06455 M3A_TOP Peptidase M3 Thimet oligopeptidase (TOP; PZ-peptidase; endo-oligopeptidase A; endopeptidase 24.15; soluble metallo-endopeptidase; EC 3.4.24.15) family also includes neurolysin (endopeptidase 24.16, microsomal endopeptidase, mitochondrial oligopeptidase M, neurotensin endopeptidase, soluble angiotensin II-binding protein, thimet oligopeptidase II) which hydrolyzes oligopeptides such as neurotensin, bradykinin and dynorphin A. TOP and neurolysin are neuropeptidases expressed abundantly in the testis, but also found in the liver, lung and kidney. They are involved in the metabolism of neuropeptides under 20 amino acid residues long and cleave most bioactive peptides at the same sites, but recognize different positions on some naturally occurring and synthetic peptides; they cleave at distinct sites on the 13-residue bioactive peptide neurotensin, which modulates central dopaminergic and cholinergic circuits. TOP has been shown to degrade peptides released by the proteasom
Probab=69.29 E-value=3.7 Score=40.04 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=26.5
Q ss_pred CCCCCEEEEeecCCC---------CEEEECHHHHh-------cCCHHHHHHHHHHHHHHHHhc
Q 025222 148 SPVPNAYTLAISGKK---------PFVVVHTSLVE-------LLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 148 ~~~~NA~a~G~~~~~---------~~Ivl~~gLl~-------~L~~~EL~aVlaHElgHi~~~ 194 (256)
+....|++.++.+.+ |.++|-..+-. .|+-+++. .|+||+||-.|.
T Consensus 216 gK~~Ga~~~~~~~~~~~~~g~~~~P~~~i~~Nf~~~~~~~p~ll~~~~V~-TLfHEfGHalH~ 277 (472)
T cd06455 216 GKYGHAANFGLQPGFLLPDGSRQYPVAALVCNFPKPTADKPSLLRHDEVE-TFFHEFGHVIHH 277 (472)
T ss_pred CCCCCccccccccceecCCCCEeCCEEEEECcCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHH
Confidence 345778887764433 43333222111 23456764 689999999963
No 61
>PF01447 Peptidase_M4: Thermolysin metallopeptidase, catalytic domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR013856 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1BQB_A 1U4G_A 1EZM_A 3DBK_A 1ESP_A 1NPC_A 1LND_E ....
Probab=69.08 E-value=2.7 Score=34.95 Aligned_cols=42 Identities=21% Similarity=0.105 Sum_probs=21.1
Q ss_pred eCCCCCEEEEeecCCCCEEEECHHHHhcCCHH-HHHHHHHHHHHHHHh
Q 025222 147 QSPVPNAYTLAISGKKPFVVVHTSLVELLTRK-ELQAVLAHELGHLKC 193 (256)
Q Consensus 147 ~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~-EL~aVlaHElgHi~~ 193 (256)
.....|||.-| ..++...|--..+.+= .=.=|+|||++|-.-
T Consensus 106 g~~~~NAfW~g-----~~m~yGdG~~~~f~~~~~~lDVvaHEltHGVt 148 (150)
T PF01447_consen 106 GKNYNNAFWNG-----SQMVYGDGDGQIFKPFASSLDVVAHELTHGVT 148 (150)
T ss_dssp SSSTT-EEE-S-----SSEEEE---SSSBS-GGG-HHHHHHHHHHHHH
T ss_pred CCCccCccccC-----CEEEEECCCCcccccCccccceeeeccccccc
Confidence 34578999643 2477776633222211 112299999999653
No 62
>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C.
Probab=68.90 E-value=2.7 Score=32.63 Aligned_cols=11 Identities=45% Similarity=0.727 Sum_probs=10.1
Q ss_pred HHHHHHHHHHH
Q 025222 182 AVLAHELGHLK 192 (256)
Q Consensus 182 aVlaHElgHi~ 192 (256)
.+++||+||..
T Consensus 109 ~~~~HEiGH~l 119 (124)
T PF13582_consen 109 DTFAHEIGHNL 119 (124)
T ss_dssp THHHHHHHHHT
T ss_pred eEeeehhhHhc
Confidence 89999999976
No 63
>PF01431 Peptidase_M13: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR018497 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A 3DWB_A 3ZUK_A.
Probab=68.84 E-value=3.4 Score=35.22 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=24.6
Q ss_pred CCCEEEECHHHHhc-C-C--------HHHHHHHHHHHHHHHHhcch
Q 025222 161 KKPFVVVHTSLVEL-L-T--------RKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 161 ~~~~Ivl~~gLl~~-L-~--------~~EL~aVlaHElgHi~~~H~ 196 (256)
....|+|+.++++. + + -.-|-+|||||+.|.--.+.
T Consensus 7 ~~N~i~ip~~~l~~P~f~~~~p~~~~yg~lG~ilahel~hafd~~g 52 (206)
T PF01431_consen 7 RFNSIVIPAGILQPPFFDPNYPPALNYGGLGFILAHELMHAFDPEG 52 (206)
T ss_dssp TTTEEEEEGGGSSTTT--TTS-HHHHHHTHHHHHHHHHHHCTSTTG
T ss_pred ccCEEEecHHHhCCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44578888887763 1 2 13588899999999775443
No 64
>cd06258 Peptidase_M3_like The peptidase M3-like family, also called neurolysin-like family, is part of the "zincins" metallopeptidases, and includes M3, M2 and M32 families of metallopeptidases. The M3 family is subdivided into two subfamilies: the widespread M3A, which comprises a number of high-molecular mass endo- and exopeptidases from bacteria, archaea, protozoa, fungi, plants and animals, and the small M3B, whose members are enzymes primarily from bacteria. Well-known mammalian/eukaryotic M3A endopeptidases are the thimet oligopeptidase (TOP; endopeptidase 3.4.24.15), neurolysin (alias endopeptidase 3.4.24.16), and the mitochondrial intermediate peptidase. The first two are intracellular oligopeptidases, which act only on relatively short substrates of less than 20 amino acid residues, while the latter cleaves N-terminal octapeptides from proteins during their import into the mitochondria. The M3A subfamily also contains several bacterial endopeptidases, collectively called olig
Probab=67.83 E-value=5.2 Score=37.24 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=31.0
Q ss_pred eCCCCCEEEEeecC----CCCEEEECHHHHhc-------CCHHHHHHHHHHHHHHHHhc
Q 025222 147 QSPVPNAYTLAISG----KKPFVVVHTSLVEL-------LTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 147 ~~~~~NA~a~G~~~----~~~~Ivl~~gLl~~-------L~~~EL~aVlaHElgHi~~~ 194 (256)
++....|+++++.+ ..|.+.|....-.. ++-+++. .+.||+||..+.
T Consensus 111 ~gK~~~a~~~~~~~~~~~~~~~~~i~~n~~~~~~~~~~ll~~~~v~-tl~HE~GHa~h~ 168 (365)
T cd06258 111 KGKYPHGFCTGLDPGFNRQDKDVRILANFTSPAAPDPVLLGHDDIN-TLFHEFGHAVHF 168 (365)
T ss_pred CCCCCCCeeccccCCCCCCCCeEEEEccCCCCCCCCCCcCCHHHHH-HHHHHHhHHHHH
Confidence 34567889888642 24666666554432 4667765 478999999964
No 65
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=67.03 E-value=7 Score=41.26 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHhcch
Q 025222 178 KELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~~H~ 196 (256)
+.+..|++||++|-=.|+.
T Consensus 281 ~~i~~VIaHElaHqWfGNl 299 (863)
T TIGR02414 281 ERIESVIAHEYFHNWTGNR 299 (863)
T ss_pred HHHHHHHHHHHHHHHhcce
Confidence 3478999999999877654
No 66
>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily. Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=66.56 E-value=3.8 Score=34.65 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 025222 177 RKELQAVLAHELGHLK 192 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~ 192 (256)
......++|||+||..
T Consensus 128 ~~~~a~~~AHElGH~l 143 (194)
T cd04269 128 LLLFAVTMAHELGHNL 143 (194)
T ss_pred hHHHHHHHHHHHHhhc
Confidence 3577899999999998
No 67
>cd06456 M3A_DCP_Oligopeptidase_A Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70) enzyme. DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from E. coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). Oligopeptidase A (OpdA) may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala.
Probab=66.19 E-value=6.4 Score=37.98 Aligned_cols=44 Identities=27% Similarity=0.425 Sum_probs=27.9
Q ss_pred CCCEEEEeecCC-------CCEEEECHHHHh-------cCCHHHHHHHHHHHHHHHHhc
Q 025222 150 VPNAYTLAISGK-------KPFVVVHTSLVE-------LLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 150 ~~NA~a~G~~~~-------~~~Ivl~~gLl~-------~L~~~EL~aVlaHElgHi~~~ 194 (256)
..+|++.++.+. .|++++.-.+-. .|+-+++. .|.||+||..|.
T Consensus 165 ~~ga~~~~~~~~~~~~~~~~P~~~l~~nf~~~~~~~p~lL~~~~v~-tLfHEfGHalH~ 222 (422)
T cd06456 165 RGGAWMNNLRSQSKNGLGQKPVAYLVCNFTKPAGGKPALLTHDEVT-TLFHEFGHALHH 222 (422)
T ss_pred CCCceeecccccccCCCCCCCEEEEECCCCCCCCCCCCccCHHHHH-HHHHHHHHHHHH
Confidence 467787776432 376665443322 34677775 578999999964
No 68
>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A ....
Probab=64.45 E-value=3.9 Score=34.38 Aligned_cols=13 Identities=46% Similarity=0.583 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHh
Q 025222 181 QAVLAHELGHLKC 193 (256)
Q Consensus 181 ~aVlaHElgHi~~ 193 (256)
.-++|||+||...
T Consensus 112 ~~~~aHElGH~lG 124 (173)
T PF13574_consen 112 IDTFAHELGHQLG 124 (173)
T ss_dssp HHHHHHHHHHHHT
T ss_pred eeeehhhhHhhcC
Confidence 4469999999984
No 69
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=64.32 E-value=23 Score=26.12 Aligned_cols=55 Identities=24% Similarity=0.309 Sum_probs=32.1
Q ss_pred CcHHHHHHH----HHHHHHhCcCCC---cEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHH
Q 025222 121 QLPELHQLM----TEAAEILNLEAP---DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (256)
Q Consensus 121 ~~p~L~~~l----~~~~~~l~i~~p---~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVla 185 (256)
.+|+..+.+ ..+++.+|+..| ++.|.++..-+-+.. + +.+| .+ .++++||.+|-|
T Consensus 15 ~Dp~Fr~~Ll~DPraaL~e~G~~~P~~~~i~VvE~t~~~~~lV-l-P~~P-----~~---~lse~~L~~vag 76 (77)
T TIGR03793 15 EDEAFKQALLTNPKEALEREGVQVPAEVEVKVVEESPTVLYLV-L-PVNP-----DI---ELTDEQLDAVAG 76 (77)
T ss_pred cCHHHHHHHHHCHHHHHHHhCCCCCCceEEEEEEcCCCeEEEE-e-cCCC-----CC---CCCHHHHHHhhC
Confidence 456555555 556777898755 666776543222221 1 1222 22 799999999864
No 70
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=63.44 E-value=14 Score=38.70 Aligned_cols=67 Identities=16% Similarity=0.085 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCcCC--CcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhc--CC---HHHHHHHHHHHHHHHHhcch
Q 025222 127 QLMTEAAEILNLEA--PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVEL--LT---RKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 127 ~~l~~~~~~l~i~~--p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~--L~---~~EL~aVlaHElgHi~~~H~ 196 (256)
+.++-+-+.+|+|- |++-++--|..++- |+ .+-..|.+...++.. .+ .+.+..|++||++|-=-|+.
T Consensus 230 ~~l~~~e~~fg~pYP~~k~d~V~vP~f~~G--aM-En~Glit~~e~~l~~~~~~~~~~~~~~~viaHElAHqWFGnl 303 (831)
T TIGR02412 230 QGLAFFHRKFGYPYPFKKYDQIFVPEFNAG--AM-ENAGCVTFAENFLHRAEATRAEKENRAGVILHEMAHMWFGDL 303 (831)
T ss_pred HHHHHHHHHhCCCCCcccCCEEEcCCCCCC--cc-cccceeeechhhccCCcCCHHHHHHHHHHHHHHHHHHHhCCE
Confidence 34444556778763 44444433332321 12 122367776665421 12 23577899999999887754
No 71
>COG4324 Predicted aminopeptidase [General function prediction only]
Probab=62.10 E-value=6.3 Score=36.10 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.8
Q ss_pred ECHHHHhc---CCHHHHHHHHHHHHHHHH---hcchHHHH
Q 025222 167 VHTSLVEL---LTRKELQAVLAHELGHLK---CDHGVWLT 200 (256)
Q Consensus 167 l~~gLl~~---L~~~EL~aVlaHElgHi~---~~H~~~~~ 200 (256)
+.++|+.. .++.+|+.+|=||++|.+ ++|...+-
T Consensus 181 FdDPlLstmlr~dd~~lA~LIFHELAHQk~Y~~~DtAFNE 220 (376)
T COG4324 181 FDDPLLSTMLRQDDTYLASLIFHELAHQKIYVNNDTAFNE 220 (376)
T ss_pred cccHHHHHHhcCChHHHHHHHHHHHhhheEeecCcchHhH
Confidence 34556654 489999999999999987 56776654
No 72
>KOG1047 consensus Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones; Defense mechanisms; Amino acid transport and metabolism]
Probab=61.54 E-value=4.4 Score=40.46 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=24.1
Q ss_pred CCCEE-EECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 161 KKPFV-VVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 161 ~~~~I-vl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
.+|.+ .++..|+. .+.-+.-|||||++|--.|
T Consensus 270 ENPcltF~TpTlla--GDrsl~~vIaHEIAHSWtG 302 (613)
T KOG1047|consen 270 ENPCLTFVTPTLLA--GDRSLVDVIAHEIAHSWTG 302 (613)
T ss_pred cCcceeeecchhhc--CCcchhhHHHHHhhhhhcc
Confidence 66766 45555554 7778899999999997655
No 73
>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site.; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....
Probab=61.39 E-value=7.3 Score=33.10 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 025222 176 TRKELQAVLAHELGHLKC 193 (256)
Q Consensus 176 ~~~EL~aVlaHElgHi~~ 193 (256)
+....+.++|||+||...
T Consensus 127 ~~~~~a~~~AHelGH~lG 144 (199)
T PF01421_consen 127 SGLSFAVIIAHELGHNLG 144 (199)
T ss_dssp SHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHhcC
Confidence 467889999999999873
No 74
>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup. The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.
Probab=60.98 E-value=3.5 Score=34.74 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025222 177 RKELQAVLAHELGHLK 192 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~ 192 (256)
.-+...++|||+||..
T Consensus 130 ~~~~~~~~aHElGH~l 145 (192)
T cd04267 130 TLLTALTMAHELGHNL 145 (192)
T ss_pred ceeehhhhhhhHHhhc
Confidence 3567889999999998
No 75
>KOG3314 consensus Ku70-binding protein [Replication, recombination and repair]
Probab=60.94 E-value=27 Score=29.77 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=36.4
Q ss_pred HHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhcchH
Q 025222 128 LMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 128 ~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~~ 197 (256)
.+.+..+++|....+-.+.-.+-...-+-|+.+.+. |++-+.-+ -+.+++.-|++|||-|.--.|-+
T Consensus 42 fl~~am~k~~c~~~d~~isc~~C~~~~~GGy~~~~g-IvlCqN~l--~~q~h~n~vv~HElIH~fDd~r~ 108 (194)
T KOG3314|consen 42 FLMEAMEKSGCRVGDNFISCVVCTGPVAGGYTPGRG-IVLCQNRL--TIQDHVNQVVIHELIHAFDDCRA 108 (194)
T ss_pred HHHHHHHHcCCCccCCceEEeeCCCCccCCccCCCc-eEEecccc--chHHHHHHHHHHHHHHHHHhhhh
Confidence 344444566765332333221111112234444555 55555422 27889999999999999855443
No 76
>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).
Probab=60.73 E-value=4.2 Score=33.29 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHh-cch
Q 025222 177 RKELQAVLAHELGHLKC-DHG 196 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~~-~H~ 196 (256)
...+..|+.||+||... +|.
T Consensus 104 ~~~~~~~~~HEiGHaLGL~H~ 124 (157)
T cd04278 104 GTDLFSVAAHEIGHALGLGHS 124 (157)
T ss_pred cchHHHHHHHHhccccccCCC
Confidence 35699999999999873 343
No 77
>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.
Probab=58.54 E-value=5.8 Score=32.93 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHh-cchH
Q 025222 177 RKELQAVLAHELGHLKC-DHGV 197 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~~-~H~~ 197 (256)
.....-++.||+||+.. .|.+
T Consensus 66 ~~~~g~TltHEvGH~LGL~HtF 87 (154)
T PF05572_consen 66 QYNFGKTLTHEVGHWLGLYHTF 87 (154)
T ss_dssp TS-SSHHHHHHHHHHTT---TT
T ss_pred ccccccchhhhhhhhhcccccc
Confidence 44567899999999983 3443
No 78
>cd00203 ZnMc Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.
Probab=58.54 E-value=4.3 Score=33.01 Aligned_cols=16 Identities=50% Similarity=0.623 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 025222 177 RKELQAVLAHELGHLK 192 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~ 192 (256)
..+...+++||+||..
T Consensus 93 ~~~~~~~~~HElGH~L 108 (167)
T cd00203 93 TKEGAQTIAHELGHAL 108 (167)
T ss_pred cccchhhHHHHHHHHh
Confidence 4578999999999998
No 79
>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup. The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.
Probab=57.29 E-value=3.6 Score=36.33 Aligned_cols=11 Identities=55% Similarity=0.848 Sum_probs=10.2
Q ss_pred HHHHHHHHHHH
Q 025222 182 AVLAHELGHLK 192 (256)
Q Consensus 182 aVlaHElgHi~ 192 (256)
.++|||+||..
T Consensus 147 ~t~AHElGHnL 157 (228)
T cd04271 147 QVFAHEIGHTF 157 (228)
T ss_pred eehhhhhhhhc
Confidence 59999999998
No 80
>PF10023 DUF2265: Predicted aminopeptidase (DUF2265); InterPro: IPR014553 This group represents a predicted aminopeptidase.
Probab=57.12 E-value=6.4 Score=37.02 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=24.8
Q ss_pred CHHHHhc---CCHHHHHHHHHHHHHHHH---hcchHHHH
Q 025222 168 HTSLVEL---LTRKELQAVLAHELGHLK---CDHGVWLT 200 (256)
Q Consensus 168 ~~gLl~~---L~~~EL~aVlaHElgHi~---~~H~~~~~ 200 (256)
+++++.. .++.||+.+|=|||+|-. .+|...|=
T Consensus 150 ~DPlLSt~l~~~~~~LA~LIfHELaHq~~Yv~~dt~FNE 188 (337)
T PF10023_consen 150 DDPLLSTMLRYPDGELARLIFHELAHQTLYVKGDTAFNE 188 (337)
T ss_pred CCcccccccCCCchHHHHHHHHHHhhceeecCCCchhhH
Confidence 4445544 488999999999999965 57776663
No 81
>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs. Metalloproteases secreted by the salivary glands of arthropods.
Probab=56.80 E-value=6.6 Score=34.11 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 025222 179 ELQAVLAHELGHLK 192 (256)
Q Consensus 179 EL~aVlaHElgHi~ 192 (256)
.-..++|||+||..
T Consensus 144 ~~~~~~AHElGH~l 157 (220)
T cd04272 144 YGVYTMTHELAHLL 157 (220)
T ss_pred ccHHHHHHHHHHHh
Confidence 44799999999998
No 82
>KOG1046 consensus Puromycin-sensitive aminopeptidase and related aminopeptidases [Amino acid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=56.43 E-value=25 Score=37.32 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHHHhCcC--CCcEEE--EeCCCCCEEEEeecCCCCEEEECHHHHhcCC-------HHHHHHHHHHHHHHHHhcch
Q 025222 132 AAEILNLE--APDLYV--RQSPVPNAYTLAISGKKPFVVVHTSLVELLT-------RKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 132 ~~~~l~i~--~p~vyv--~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~-------~~EL~aVlaHElgHi~~~H~ 196 (256)
..+-.+++ .|++=+ +++-...|+- +-..|......+-.=+ ...++-|||||++|.=-|..
T Consensus 270 ~e~~f~i~yPLpK~D~iavPdf~~GAME-----NwGLvtyre~~lL~~~~~ss~~~k~~va~vIaHElAHQWFGNL 340 (882)
T KOG1046|consen 270 YEDYFGIPYPLPKLDLVAVPDFSAGAME-----NWGLVTYRETALLYDPQTSSSSNKQRVAEVIAHELAHQWFGNL 340 (882)
T ss_pred HHHHhCCCCCCccccEEecCCccccchh-----cCcceeeeehhhccCCCcCcHHHHHHHHHHHHHHHHHHHhcCc
Confidence 33445665 454433 4444334432 2235666555442111 45699999999999887644
No 83
>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like
Probab=55.15 E-value=6.4 Score=34.10 Aligned_cols=16 Identities=38% Similarity=0.584 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHh-cchH
Q 025222 182 AVLAHELGHLKC-DHGV 197 (256)
Q Consensus 182 aVlaHElgHi~~-~H~~ 197 (256)
-+++||+||... +|..
T Consensus 139 ~~~aHEiGH~lGl~H~~ 155 (206)
T PF13583_consen 139 QTFAHEIGHNLGLRHDF 155 (206)
T ss_pred hHHHHHHHHHhcCCCCc
Confidence 459999999983 4443
No 84
>PRK14015 pepN aminopeptidase N; Provisional
Probab=54.00 E-value=26 Score=37.20 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhcch
Q 025222 179 ELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 179 EL~aVlaHElgHi~~~H~ 196 (256)
.+..|++||++|-=.|+.
T Consensus 295 ~i~~vIaHElaHqWFGNl 312 (875)
T PRK14015 295 RIESVIAHEYFHNWTGNR 312 (875)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 488999999999877755
No 85
>TIGR02411 leuko_A4_hydro leukotriene A-4 hydrolase/aminopeptidase. Members of this family represent a distinctive subset within the zinc metallopeptidase family M1 (pfam01433). The majority of the members of pfam01433 are aminopeptidases, but the sequences in this family for which the function is known are leukotriene A-4 hydrolase. A dual epoxide hydrolase and aminopeptidase activity at the same active site is indicated. The physiological substrate for aminopeptidase activity is not known.
Probab=52.48 E-value=8.4 Score=38.94 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=21.4
Q ss_pred CCCEEE-ECHHHHhcCCHHHHHHHHHHHHHHHHhcch
Q 025222 161 KKPFVV-VHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 161 ~~~~Iv-l~~gLl~~L~~~EL~aVlaHElgHi~~~H~ 196 (256)
.+|.+. .+..++ .++.+...|++||++|-=-|..
T Consensus 261 EN~~ltf~~~~ll--~~d~s~~~viaHElAHqWfGNl 295 (601)
T TIGR02411 261 ENPNLTFATPTLI--AGDRSNVDVIAHELAHSWSGNL 295 (601)
T ss_pred ccccceeeccccc--cCChhhhhhHHHHHHhhccCce
Confidence 344443 334433 2445667899999999877744
No 86
>smart00235 ZnMc Zinc-dependent metalloprotease. Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.
Probab=50.24 E-value=8.8 Score=30.55 Aligned_cols=12 Identities=58% Similarity=0.778 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 025222 181 QAVLAHELGHLK 192 (256)
Q Consensus 181 ~aVlaHElgHi~ 192 (256)
.+|+.||+||..
T Consensus 87 ~~~~~HEigHaL 98 (140)
T smart00235 87 TGVAAHELGHAL 98 (140)
T ss_pred cccHHHHHHHHh
Confidence 359999999997
No 87
>KOG3624 consensus M13 family peptidase [Amino acid transport and metabolism]
Probab=46.10 E-value=15 Score=37.40 Aligned_cols=49 Identities=27% Similarity=0.285 Sum_probs=32.2
Q ss_pred EEEeCCCCCEEEEeecCCCCEEEECHHHHhc----------CCHHHHHHHHHHHHHHHHhcc
Q 025222 144 YVRQSPVPNAYTLAISGKKPFVVVHTSLVEL----------LTRKELQAVLAHELGHLKCDH 195 (256)
Q Consensus 144 yv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~----------L~~~EL~aVlaHElgHi~~~H 195 (256)
++......||+-. ..+..|+++-++++. ++=.-+-+|||||++|---.+
T Consensus 475 ~~~~~~~~na~Y~---~~~N~i~~pa~ilq~P~f~~~~P~~~nyg~iG~vigHEl~H~FD~~ 533 (687)
T KOG3624|consen 475 WVGSPAQVNAFYS---PEKNEIVFPAGLLQPPFFDLSYPDYLNYGGIGFVIGHELTHGFDDQ 533 (687)
T ss_pred cccccceeecccc---CCCceEEEehhcccCCCCCcccchhhhhHHHHHHHHHHHhhccccc
Confidence 3333345677643 234578889988874 333568899999999966433
No 88
>TIGR02421 QEGLA conserved hypothetical protein. Members of this family include a possible metal-binding motif HEXXXH and, nearby, a perfectly conserved motif QEGLA. All members belong to the Proteobacteria, including Agrobacterium tumefaciens and several species of Vibrio and Pseudomonas, and are found in only one copy per chromosome (Vibrio vulnificus, with two chromosomes, has two). The function is unknown.
Probab=45.39 E-value=34 Score=32.59 Aligned_cols=61 Identities=15% Similarity=0.247 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHhCcCC-CcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHH
Q 025222 122 LPELHQLMTEAAEILNLEA-PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELG 189 (256)
Q Consensus 122 ~p~L~~~l~~~~~~l~i~~-p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElg 189 (256)
..+..+.+++.++..+... .+|.+.++-..+|.+.| + .|.|+++. .+++.++.+++-||+|
T Consensus 136 A~~a~~~~~~~~~~y~~~~~~~V~~sd~l~a~a~v~~---~--~l~i~~~a--~fs~~~l~~L~~HEig 197 (366)
T TIGR02421 136 ATEAAEILQQRLEDYFGEETIRVTLSDDLPAGAMVSG---D--KLKLNSDA--MFSERDLEALIHHEIG 197 (366)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEECcchhHHHhccC---C--eEEECCCC--CcCHHHHHHHHHHhHH
Confidence 3467778888888777652 33433333345666543 2 68888873 3799999999999998
No 89
>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3. A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=44.47 E-value=17 Score=31.00 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025222 177 RKELQAVLAHELGHLKC 193 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~~ 193 (256)
..+..+++.||+||...
T Consensus 89 ~~~~~~~i~HElgHaLG 105 (198)
T cd04327 89 DPEFSRVVLHEFGHALG 105 (198)
T ss_pred hhhHHHHHHHHHHHHhc
Confidence 34667899999999984
No 90
>PF02163 Peptidase_M50: Peptidase family M50; InterPro: IPR008915 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry contains metallopeptidases belonging to MEROPS peptidase family M50 (S2P protease family, clan MM). Members of the M50 metallopeptidase family include: mammalian sterol-regulatory element binding protein (SREBP) site 2 protease, Escherichia coli protease EcfE, stage IV sporulation protein FB and various hypothetical bacterial and eukaryotic homologues. A number of proteins are classified as non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity.; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3B4R_A 3ID4_A 3ID2_A 2ZPL_B 3ID1_A 2ZPM_A 3ID3_B 2HGA_A.
Probab=44.30 E-value=16 Score=30.62 Aligned_cols=14 Identities=43% Similarity=0.721 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHh
Q 025222 180 LQAVLAHELGHLKC 193 (256)
Q Consensus 180 L~aVlaHElgHi~~ 193 (256)
+-+++.||+||...
T Consensus 7 ~i~i~~HE~gH~~~ 20 (192)
T PF02163_consen 7 LISIVLHELGHALA 20 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccccccccccccc
Confidence 35789999999874
No 91
>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily. Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.
Probab=43.78 E-value=16 Score=30.64 Aligned_cols=35 Identities=17% Similarity=0.069 Sum_probs=23.2
Q ss_pred CEEEECHHHHhcC--CHHHHHHHHHHHHHHHHh-cchH
Q 025222 163 PFVVVHTSLVELL--TRKELQAVLAHELGHLKC-DHGV 197 (256)
Q Consensus 163 ~~Ivl~~gLl~~L--~~~EL~aVlaHElgHi~~-~H~~ 197 (256)
..|.+........ .......++.||+||... +|+.
T Consensus 94 g~i~~~~~~~~~~~~~g~~~~~t~~HEiGHaLGL~H~~ 131 (186)
T cd04277 94 GDIWFNSSYDTNSDSPGSYGYQTIIHEIGHALGLEHPG 131 (186)
T ss_pred ceeEEecCcccccCCCChhhHHHHHHHHHHHhcCCCCC
Confidence 4566766544321 245678999999999984 4553
No 92
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=43.38 E-value=17 Score=31.49 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=23.0
Q ss_pred CEEEECHHHHhcCC-------HHHHHHHHHHHHHHHHh
Q 025222 163 PFVVVHTSLVELLT-------RKELQAVLAHELGHLKC 193 (256)
Q Consensus 163 ~~Ivl~~gLl~~L~-------~~EL~aVlaHElgHi~~ 193 (256)
..|.+..+.+.... .+-+..+++||+||...
T Consensus 92 a~V~l~~~~~~~~~~~~~~~~~~~~~~~~~he~gh~lG 129 (197)
T cd04276 92 ADVILYSGFLRQDQLWYEDLLAASLRYLLAHEVGHTLG 129 (197)
T ss_pred EEEEeCchhhccchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888775432 24589999999999873
No 93
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=42.91 E-value=75 Score=22.72 Aligned_cols=52 Identities=19% Similarity=0.173 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHH
Q 025222 127 QLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (256)
Q Consensus 127 ~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVla 185 (256)
+.++.+.+.++++ .+.+.. +++.|.....|.+.++......++++.+..++.
T Consensus 19 ~l~~~l~~~L~~~--~v~l~~-----~~ClG~C~~gP~v~V~~~~~~~~t~~~i~~~~~ 70 (72)
T cd03082 19 ELLAALEAGLGPE--GVRVVR-----APCVGRCERAPAALVGQRPVDGATPAAVAAAVE 70 (72)
T ss_pred HHHHHHHHHhCCC--eEEEEe-----cCcCCccCCCCeEEECCEEeCCcCHHHHHHHHh
Confidence 3444455555544 333333 346677778899999999999999998887653
No 94
>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.
Probab=40.41 E-value=5.2 Score=34.40 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHH
Q 025222 180 LQAVLAHELGHLK 192 (256)
Q Consensus 180 L~aVlaHElgHi~ 192 (256)
...++|||+||..
T Consensus 140 ~a~~~aHElGH~L 152 (207)
T cd04273 140 SAFTIAHELGHVL 152 (207)
T ss_pred eEEeeeeechhhc
Confidence 5689999999988
No 95
>COG3930 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.30 E-value=28 Score=33.17 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=31.4
Q ss_pred cEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHH
Q 025222 142 DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGH 190 (256)
Q Consensus 142 ~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgH 190 (256)
++|..+.+..-|-+.--...-|.+.|+...+ ++++++.+++.||+|=
T Consensus 210 ~~~~~~~~g~~Ara~v~~d~pp~lli~~~t~--~~~~~V~~Ll~HEigV 256 (434)
T COG3930 210 RVYESDTAGFVARAEVRDDLPPTLLIRRDTL--MEERRVRALLSHEIGV 256 (434)
T ss_pred eeeecCccchhhhHhhcCCCCcceeehhhhh--cCHHHHHHHHHhhhhe
Confidence 4666665555554432122345677887765 6999999999999984
No 96
>PRK10911 oligopeptidase A; Provisional
Probab=40.26 E-value=23 Score=36.34 Aligned_cols=19 Identities=37% Similarity=0.485 Sum_probs=15.2
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 025222 175 LTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 175 L~~~EL~aVlaHElgHi~~~ 194 (256)
|+-+|+. .|.||+||..|+
T Consensus 459 L~~~~v~-tlfHEfGHalH~ 477 (680)
T PRK10911 459 FTHDEVI-TLFHEFGHGLHH 477 (680)
T ss_pred cCHHHHH-HHHHHHhHHHHH
Confidence 4668886 688999999964
No 97
>PF08014 DUF1704: Domain of unknown function (DUF1704); InterPro: IPR012548 This family contains many hypothetical proteins.
Probab=40.18 E-value=51 Score=31.14 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhCc-C--CCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHH-HHHHhc
Q 025222 123 PELHQLMTEAAEILNL-E--APDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHEL-GHLKCD 194 (256)
Q Consensus 123 p~L~~~l~~~~~~l~i-~--~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHEl-gHi~~~ 194 (256)
.+..+.+++.+++..- . ...|.+.++-..+|.+.+ + .|.|+.+. .+++.++.+++-||+ .|+...
T Consensus 112 ~~~~~~~~~~~~~y~~~~~~~~~V~~sddl~a~A~v~~---~--~l~I~~~~--~fs~~~l~~L~~HEigvH~lt~ 180 (349)
T PF08014_consen 112 EEAVSRLQERLKKYFGKEGFEVKVELSDDLLARAMVSG---D--RLKINKNA--MFSERDLEALLHHEIGVHLLTT 180 (349)
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEEcCCcchhhcccC---C--eeEEcCCC--CcCHHHHHHHHHHhhhhhhccc
Confidence 3566777777766521 1 223444444456776543 2 38888862 369999999999999 477643
No 98
>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site.; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....
Probab=38.31 E-value=47 Score=28.29 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhCcC------CCcEEEE-eCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 124 ELHQLMTEAAEILNLE------APDLYVR-QSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 124 ~L~~~l~~~~~~l~i~------~p~vyv~-~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.+.+.+++..+...|. ....|+. .+....--..|..+....|.|..+-. -.+++.||++|...
T Consensus 23 ~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~~~~gC~S~vG~~~g~q~i~l~~~c~-------~~~~i~HEl~HaLG 92 (191)
T PF01400_consen 23 RIRKAMDEWEKNTCIRFVERTENEDDYISFSNGSGCWSYVGRQGGEQTINLGDGCF-------SVGTILHELGHALG 92 (191)
T ss_dssp HHHHHHHHHHHHSSEEEEE-SSSSSSEEEEESSSSEEEESS--SSEEEEEE-TTC--------SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCceEEEeecCccccchhhhcCcceeEEecceeC-------CccchHHHHHHHHh
Confidence 4556666665555442 1123332 22222222235444445566653321 35699999999883
No 99
>cd05709 S2P-M50 Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of this family use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. The domain core structure appears to contain at least three transmembrane helices with a catalytic zinc atom coordinated by three conserved residues contained within the consensus sequence HExxH, together with a conserved aspartate residue. The S2P/M50 family of RIP proteases is widely distributed; in eukaryotic cells, they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum (ER) stress responses. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of sterol regulatory element-bindin
Probab=38.00 E-value=23 Score=29.50 Aligned_cols=12 Identities=50% Similarity=0.675 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHH
Q 025222 181 QAVLAHELGHLK 192 (256)
Q Consensus 181 ~aVlaHElgHi~ 192 (256)
-.|+.||+||..
T Consensus 9 i~i~iHE~gH~~ 20 (180)
T cd05709 9 ISVTVHELGHAL 20 (180)
T ss_pred HHHHHHHHHHHH
Confidence 468999999987
No 100
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=36.61 E-value=1.3e+02 Score=22.91 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEEC--HH--HHhcCCHHHHHHHHHHHHHHHHhcchH
Q 025222 122 LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVH--TS--LVELLTRKELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 122 ~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~--~g--Ll~~L~~~EL~aVlaHElgHi~~~H~~ 197 (256)
..++++.+++..++.|+ ++-+.... +.|+....|.|.+. .+ +....+++....++..-+.- ...|+.
T Consensus 16 A~~V~~al~~ei~~~gl---~v~v~~tG-----C~G~C~~ePlV~V~~p~g~v~Y~~V~~edv~~Iv~~~~~~-~~~h~~ 86 (92)
T cd03063 16 ADEVAEAIEAEAAARGL---AATIVRNG-----SRGMYWLEPLVEVETPGGRVAYGPVTPADVASLLDAGALE-GGEHPL 86 (92)
T ss_pred HHHHHHHHHHHHHHcCC---eEEEEEec-----CceecCCCCEEEEEeCCCcEEEEeCCHHHHHHHHHHHhhc-CCcCch
Confidence 45788888888888887 46666543 44666678999773 34 45668999998888765553 256776
Q ss_pred HH
Q 025222 198 WL 199 (256)
Q Consensus 198 ~~ 199 (256)
+.
T Consensus 87 ~~ 88 (92)
T cd03063 87 CL 88 (92)
T ss_pred hc
Confidence 53
No 101
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=36.42 E-value=21 Score=33.17 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 025222 175 LTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 175 L~~~EL~aVlaHElgHi~~ 193 (256)
+.+-.+-+.++||+||.+.
T Consensus 191 ~p~~~~P~T~~HElAHq~G 209 (318)
T PF12725_consen 191 LPPYSLPFTICHELAHQLG 209 (318)
T ss_pred CCcccccHHHHHHHHHHhC
Confidence 3456788999999999984
No 102
>cd06163 S2P-M50_PDZ_RseP-like RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.
Probab=36.23 E-value=22 Score=30.33 Aligned_cols=12 Identities=42% Similarity=0.836 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHh
Q 025222 182 AVLAHELGHLKC 193 (256)
Q Consensus 182 aVlaHElgHi~~ 193 (256)
.|+-||+||...
T Consensus 11 ~v~iHElGH~~~ 22 (182)
T cd06163 11 LIFVHELGHFLV 22 (182)
T ss_pred HHHHHHHHHHHH
Confidence 578999999863
No 103
>cd06161 S2P-M50_SpoIVFB SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB.
Probab=36.21 E-value=25 Score=30.43 Aligned_cols=13 Identities=54% Similarity=0.784 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 025222 180 LQAVLAHELGHLK 192 (256)
Q Consensus 180 L~aVlaHElgHi~ 192 (256)
+-.|+-||+||..
T Consensus 38 ~~~v~iHElgH~~ 50 (208)
T cd06161 38 FLSVLLHELGHAL 50 (208)
T ss_pred HHHHHHHHHHHHH
Confidence 5679999999986
No 104
>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].
Probab=35.88 E-value=88 Score=29.07 Aligned_cols=65 Identities=18% Similarity=0.226 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHHHh-CcC-----CCcEEEEeCCCCCEEEEee---cCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHH
Q 025222 122 LPELHQLMTEAAEIL-NLE-----APDLYVRQSPVPNAYTLAI---SGKKPFVVVHTSLVELLTRKELQAVLAHELGHLK 192 (256)
Q Consensus 122 ~p~L~~~l~~~~~~l-~i~-----~p~vyv~~~~~~NA~a~G~---~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~ 192 (256)
.-.+.+..++.++.. |+. ...+||++....-.++ |+ +|....+..+..-+ .=.+++.||+||=.
T Consensus 90 ~~~~~~~Ad~~a~~~lG~~~~s~y~h~vyvlP~~~~C~w~-Gla~v~G~~~~~~~~~~~~------~~~~~~~HElgHN~ 162 (314)
T PF05548_consen 90 WYGWADAADAAARAQLGVNAFSSYTHRVYVLPPGFACGWA-GLATVPGSQSWLWISGYGV------QDWATIMHELGHNL 162 (314)
T ss_pred HHHHHHHHHHHHHhhcCcccccccceEEEEcCCCCCCCce-EEeecCCcceeeeecCccc------ccHHHHHHHhhhhc
Confidence 445777777777765 653 2367887754322221 22 12222222221111 11249999999976
Q ss_pred h
Q 025222 193 C 193 (256)
Q Consensus 193 ~ 193 (256)
.
T Consensus 163 G 163 (314)
T PF05548_consen 163 G 163 (314)
T ss_pred c
Confidence 3
No 105
>PF06861 BALF1: BALF1 protein; InterPro: IPR010677 Epstein-Barr virus (strain GD1) (HHV-4), a human tumour DNA virus and a prominent member of gamma-herpesviruses, encodes homologues of cellular antiapoptotic viral Bcl-2 proteins BALF1 and BHRF1. They protect the virus from apoptosis in its host cell during virus synthesis [, ]. The virus infects B lymphocytes to establish a latent infection and yield proliferating, growth-transformed B cells in vitro. Bcl-2 genes are essential for the initial evasion of apoptosis which allows it to establish a latent infection or cause cellular transformation, or both []. Bcl-2 family proteins can inhibit or induce programmed cell death in part by counteracting the activity of other BCL-2 family members. BALF1, inhibits the antiapoptotic activity of EBV BHRF1 and of KSBcl-2 in several transfected cell lines. BALF1 fails, however, to inhibit the cellular BCL-2 family member, BCL-x(L). Thus, BALF1 acts as a negative regulator of the survival function of BHRF1, similar to the counterbalance observed between cellular BCL-2 family members [].
Probab=34.94 E-value=29 Score=29.65 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcchH
Q 025222 175 LTRKELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 175 L~~~EL~aVlaHElgHi~~~H~~ 197 (256)
.+++|-.++++|++||+...|-.
T Consensus 127 ~~d~e~~s~v~~~lA~Fy~~~r~ 149 (182)
T PF06861_consen 127 LNDHENASLVSHALAHFYLRYRR 149 (182)
T ss_pred cCchHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999999988764
No 106
>PF12315 DUF3633: Protein of unknown function (DUF3633); InterPro: IPR022087 This domain family is found in bacteria and eukaryotes, and is approximately 210 amino acids in length. The family is found in association with PF00412 from PFAM.
Probab=34.82 E-value=24 Score=31.02 Aligned_cols=20 Identities=40% Similarity=0.297 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHHHHHHHh
Q 025222 174 LLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 174 ~L~~~EL~aVlaHElgHi~~ 193 (256)
.|++.-.-+|+|||+.|.--
T Consensus 87 GLPrll~gsiLAHE~mHa~L 106 (212)
T PF12315_consen 87 GLPRLLTGSILAHELMHAWL 106 (212)
T ss_pred CCCHHHHhhHHHHHHHHHHh
Confidence 46777889999999999764
No 107
>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.
Probab=34.08 E-value=9.4 Score=34.80 Aligned_cols=13 Identities=54% Similarity=0.659 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHh
Q 025222 181 QAVLAHELGHLKC 193 (256)
Q Consensus 181 ~aVlaHElgHi~~ 193 (256)
.+|++||+||...
T Consensus 166 igv~~HE~gH~lG 178 (286)
T TIGR03296 166 VGVIAHELGHDLG 178 (286)
T ss_pred eeeeehhhhcccC
Confidence 5899999999653
No 108
>cd06164 S2P-M50_SpoIVFB_CBS SpoIVFB Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50B), regulates intramembrane proteolysis (RIP), and is involved in the pro-sigmaK pathway of bacterial spore formation. In this subgroup, SpoIVFB (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. It has been proposed tha
Probab=33.31 E-value=29 Score=30.56 Aligned_cols=13 Identities=54% Similarity=0.797 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHH
Q 025222 180 LQAVLAHELGHLK 192 (256)
Q Consensus 180 L~aVlaHElgHi~ 192 (256)
.-.|+-||+||..
T Consensus 53 ~~~v~iHElgH~~ 65 (227)
T cd06164 53 FASVLLHELGHSL 65 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 4678999999987
No 109
>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site. Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.
Probab=33.27 E-value=46 Score=28.04 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=19.2
Q ss_pred eecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 157 AISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 157 G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
|..+....|-|.++. +..+++.||++|...
T Consensus 58 G~~~~~q~i~l~~~c-------~~~g~v~HE~~HalG 87 (180)
T cd04280 58 GRVGGRQVVSLGSGC-------FSLGTIVHELMHALG 87 (180)
T ss_pred CccCCceeEEeCCCc-------CcCchhHHHHHHHhc
Confidence 433344556665532 226899999999974
No 110
>PF14521 Aspzincin_M35: Lysine-specific metallo-endopeptidase ; PDB: 2X3C_A 2X3A_A 2X3B_A 1GE7_B 1GE6_A 1GE5_A 1G12_A.
Probab=32.41 E-value=65 Score=26.36 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=21.6
Q ss_pred CEEEECHHHHhc--CCHHHHHHHHHHHHHHH
Q 025222 163 PFVVVHTSLVEL--LTRKELQAVLAHELGHL 191 (256)
Q Consensus 163 ~~Ivl~~gLl~~--L~~~EL~aVlaHElgHi 191 (256)
..|.|-....+. -..+--+..|-||++|+
T Consensus 77 ~~IyLc~~F~~~p~~g~~Sk~~TLiHE~SHf 107 (148)
T PF14521_consen 77 YTIYLCPAFFSAPTTGKDSKEGTLIHEWSHF 107 (148)
T ss_dssp TEEEE-HHHHHS-SSSTT-HHHHHHHHHHHS
T ss_pred eEEEEChhhcCCCCCCCCchHHHHHHhhhhh
Confidence 489999999874 23466788999999993
No 111
>PF06262 DUF1025: Possibl zinc metallo-peptidase; InterPro: IPR010428 This is a family of bacterial protein with undetermined function.; PDB: 3E11_A.
Probab=31.07 E-value=47 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.223 Sum_probs=20.3
Q ss_pred CEEEECHHHHhc-C-CH----HHHHHHHHHHHHHHHhcc
Q 025222 163 PFVVVHTSLVEL-L-TR----KELQAVLAHELGHLKCDH 195 (256)
Q Consensus 163 ~~Ivl~~gLl~~-L-~~----~EL~aVlaHElgHi~~~H 195 (256)
..|+|...=++. . ++ +++.-++-||+||+-.-+
T Consensus 50 ~rI~lyR~pl~~~~~~~~eL~~~I~~tlvhEiah~fG~~ 88 (97)
T PF06262_consen 50 DRIVLYRRPLERRARSREELAELIRDTLVHEIAHHFGIS 88 (97)
T ss_dssp EEEEEEHHHHHHT-SSHHHHHHHHHHHHHHHHHHHTT--
T ss_pred CEEEEehHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456666655544 3 44 457778889999987543
No 112
>PF02074 Peptidase_M32: Carboxypeptidase Taq (M32) metallopeptidase; InterPro: IPR001333 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M32 (carboxypeptidase Taq family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. Carboxypeptidase Taq is a zinc-containing thermostable metallopeptidase. It was originally discovered and purified from Thermus aquaticus; optimal enzymatic activity occurs at 80 celcius. Although very little is known about this enzyme, it is thought either to be associated with a membrane or to be particle bound.; GO: 0004181 metallocarboxypeptidase activity, 0006508 proteolysis; PDB: 1K9X_A 1KA4_A 1KA2_A 3DWC_A 1WGZ_A 3HQ2_A 3HOA_B.
Probab=30.93 E-value=1.1e+02 Score=30.46 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHHHHHHHHHhc
Q 025222 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCD 194 (256)
Q Consensus 125 L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~ 194 (256)
=.+..+++++.+|.+...-.+-.+. -.|++|+++ .-+-|++..-+.--..-|.+ ..||.||-.-.
T Consensus 209 Q~~~~~~~~~~~G~d~~~grld~s~--HPFt~~~~~--~DvRiTTry~e~d~~~~l~s-~iHE~GHalYE 273 (494)
T PF02074_consen 209 QKAFSRELLEYLGFDFDRGRLDESA--HPFTTGFGP--NDVRITTRYDEDDFLSALFS-TIHETGHALYE 273 (494)
T ss_dssp HHHHHHHHHHHHT--GCGEEEEE-S--S-EEEEEET--TEEEEEE--BTTBTHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccceEEecCC--CCCCCCCCC--CceeeecccccccHHHHHHH-HHHHHHHHHHH
Confidence 3455667888899986666664443 456777643 46888888665433344444 34999998743
No 113
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=30.63 E-value=33 Score=29.54 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 025222 178 KELQAVLAHELGHLKC 193 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~ 193 (256)
-.+-.++.||+||..-
T Consensus 20 ~~~l~t~~HE~gHal~ 35 (200)
T PF13398_consen 20 FRLLVTFVHELGHALA 35 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566799999999873
No 114
>cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions, relative to the core protein, and no PDZ domains.
Probab=30.31 E-value=36 Score=29.06 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 025222 179 ELQAVLAHELGHLK 192 (256)
Q Consensus 179 EL~aVlaHElgHi~ 192 (256)
=+..+..||+||..
T Consensus 40 l~~~l~iHElgH~~ 53 (183)
T cd06160 40 LLAILGIHEMGHYL 53 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 35567899999986
No 115
>PF09471 Peptidase_M64: IgA Peptidase M64; InterPro: IPR019026 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of highly selective metallo-endopeptidases belonging to the MEROPS peptidase family M64 (IgA peptidase, clan MA). The primary structure of the Clostridium ramosum IgA peptidase shows no significant overall similarity to any other known metallo-endopeptidase []. ; PDB: 3P1V_A 4DF9_D.
Probab=29.31 E-value=33 Score=31.09 Aligned_cols=16 Identities=31% Similarity=0.569 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 025222 177 RKELQAVLAHELGHLK 192 (256)
Q Consensus 177 ~~EL~aVlaHElgHi~ 192 (256)
.+....|+.||+||--
T Consensus 213 ~~~~~~v~vHE~GHsf 228 (264)
T PF09471_consen 213 NPSFKQVVVHEFGHSF 228 (264)
T ss_dssp STTHHHHHHHHHHHHT
T ss_pred cccccceeeeeccccc
Confidence 3368889999999954
No 116
>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site. This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.
Probab=28.31 E-value=53 Score=32.55 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=19.7
Q ss_pred EEEECHHHHhcCCHHHHHHHHHHHHHHHHhcch
Q 025222 164 FVVVHTSLVELLTRKELQAVLAHELGHLKCDHG 196 (256)
Q Consensus 164 ~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~~H~ 196 (256)
.|-++...+.....++..-++.||++|...-..
T Consensus 194 ~in~~p~~i~~~~~~~~~~~~~HEi~HaLGFs~ 226 (521)
T PF01457_consen 194 VININPSYIPSFYFQEFFRTVIHEIAHALGFSS 226 (521)
T ss_dssp EEE--GGG---S--HHHHHHHHHHHHHHTT-SH
T ss_pred EEEEchhHccchhhhcccceeeeeeeeeeeecc
Confidence 556677666555567888999999999985333
No 117
>cd06159 S2P-M50_PDZ_Arch Uncharacterized Archaeal homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group appears to be limited to Archaeal S2P/M50s homologs with additional putative N-terminal transmembrane spanning regions, relative to the core protein, and either one or two PDZ domains present.
Probab=27.58 E-value=39 Score=30.62 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 025222 180 LQAVLAHELGHLK 192 (256)
Q Consensus 180 L~aVlaHElgHi~ 192 (256)
.-+|+.||+||..
T Consensus 118 ~isv~iHElgHa~ 130 (263)
T cd06159 118 VVGVVVHELSHGI 130 (263)
T ss_pred HHHHHHHHHHHHH
Confidence 4569999999986
No 118
>COG0308 PepN Aminopeptidase N [Amino acid transport and metabolism]
Probab=26.81 E-value=49 Score=34.99 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhcchH
Q 025222 178 KELQAVLAHELGHLKCDHGV 197 (256)
Q Consensus 178 ~EL~aVlaHElgHi~~~H~~ 197 (256)
+..+.|++||++|-=.|+-+
T Consensus 305 ~~~~~viaHElaHqWfGnlV 324 (859)
T COG0308 305 ENVEEVIAHELAHQWFGNLV 324 (859)
T ss_pred HHHHHHHHHHHhhhccccee
Confidence 56777999999998877653
No 119
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=26.04 E-value=1.4e+02 Score=25.23 Aligned_cols=55 Identities=18% Similarity=0.350 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCcCCC------cEEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHH
Q 025222 126 HQLMTEAAEILNLEAP------DLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (256)
Q Consensus 126 ~~~l~~~~~~l~i~~p------~vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVla 185 (256)
.++++.+-+++|+..- .+.+ .+..+.|-++.-|.+.|+......+++|.+.-+|.
T Consensus 94 ~~l~~~l~~~lgi~~gett~DG~ftl-----~~v~ClGaC~~AP~vmind~~~~~lt~e~l~eil~ 154 (160)
T COG1905 94 EALLKALEKKLGIKPGETTADGKFTL-----EPVECLGACGQAPVVMINDDVYGRLTPEKLEEILE 154 (160)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEE-----eeeeeecccccCCEEEECCchhccCCHHHHHHHHH
Confidence 5667777778887632 2222 24567887888999999999999999998887764
No 120
>COG4307 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.49 E-value=57 Score=29.98 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=24.1
Q ss_pred CCEEEEeecCCCCEEEECHHHHhcCCHHHHH-----------HHHHHHHHHHH
Q 025222 151 PNAYTLAISGKKPFVVVHTSLVELLTRKELQ-----------AVLAHELGHLK 192 (256)
Q Consensus 151 ~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~-----------aVlaHElgHi~ 192 (256)
.|+ .+|- ++..|.++-.=-+...+|+++ +=.-||+||+.
T Consensus 134 e~v-mTGH--d~GlItln~AEaDda~REq~Rvem~EpYRTlLGHFRHE~GHy~ 183 (349)
T COG4307 134 ENV-MTGH--DNGLITLNLAEADDAHREQLRVEMGEPYRTLLGHFRHEIGHYY 183 (349)
T ss_pred ccc-cccc--cCceEEEeccccchHHHHHHHHHhCCcHHHHHhhhhhhhhhHH
Confidence 344 4564 678888887655444455544 33457888876
No 121
>COG3824 Predicted Zn-dependent protease [General function prediction only]
Probab=25.23 E-value=37 Score=27.46 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEECH-HHHhcCCH------HHHHHHHHHHHHHHH
Q 025222 164 FVVVHT-SLVELLTR------KELQAVLAHELGHLK 192 (256)
Q Consensus 164 ~Ivl~~-gLl~~L~~------~EL~aVlaHElgHi~ 192 (256)
.|.++. .+++...+ |++.-|+-||+||.-
T Consensus 86 rItlYRrailDywae~eetlgd~vthvliHEIgHhF 121 (136)
T COG3824 86 RITLYRRALLDYWAENEETLGDQVTHVLIHEIGHHF 121 (136)
T ss_pred eeeeeHHHHHHHHhhhhhhHhhHhhhhhhhhhhhhc
Confidence 355554 45555543 457888999999964
No 122
>cd06162 S2P-M50_PDZ_SREBP Sterol regulatory element-binding protein (SREBP) Site-2 protease (S2P), a zinc metalloprotease (MEROPS family M50A), regulates intramembrane proteolysis (RIP) of SREBP and is part of a signal transduction mechanism involved in sterol and lipid metabolism. In sterol-depleted mammalian cells, a two-step proteolytic process releases the N-terminal domains of SREBPs from membranes of the endoplasmic reticulum (ER). These domains translocate into the nucleus, where they activate genes of cholesterol and fatty acid biosynthesis. The first cleavage occurs at Site-1 within the ER lumen to generate an intermediate that is subsequently released from the membrane by cleavage at Site-2, which lies within the first transmembrane domain. It is the second proteolytic step that is carried out by the SREBP Site-2 protease (S2P) which is present in this CD family. This group appears to be limited to eumetazoan proteins and contains one PDZ domain.
Probab=24.53 E-value=48 Score=30.39 Aligned_cols=14 Identities=36% Similarity=0.506 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHh
Q 025222 180 LQAVLAHELGHLKC 193 (256)
Q Consensus 180 L~aVlaHElgHi~~ 193 (256)
+-+|+.||+||...
T Consensus 135 ~isvvvHElgHal~ 148 (277)
T cd06162 135 LISGVVHEMGHGVA 148 (277)
T ss_pred HHHHHHHHHHHHHH
Confidence 66899999999863
No 123
>PRK11767 SpoVR family protein; Provisional
Probab=24.50 E-value=87 Score=31.10 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhCcC-CC-cEEEEeCC-CCCEEE-------------------------EeecCCCCEEEECH-----H
Q 025222 124 ELHQLMTEAAEILNLE-AP-DLYVRQSP-VPNAYT-------------------------LAISGKKPFVVVHT-----S 170 (256)
Q Consensus 124 ~L~~~l~~~~~~l~i~-~p-~vyv~~~~-~~NA~a-------------------------~G~~~~~~~Ivl~~-----g 170 (256)
+..+.++++|+.+|++ -| ++-|+... ...+++ .|..+.--=|||++ -
T Consensus 19 ~~~~~I~~iA~~~GLD~yp~~~EIi~~eqml~~~as~GmP~rY~HWsfGk~y~~~~~~Y~~gl~glaYEiVINSnPciAy 98 (498)
T PRK11767 19 RYLDEIERVAKEYGLDTYPNQIEVITAEQMMDAYSSVGMPINYRHWSFGKHFIETEQLYRRGQMGLAYEIVINSNPCIAY 98 (498)
T ss_pred HHHHHHHHHHHHcCCCCCCceEEEECHHHHHHHHHhcCCCCCCCcccccHHHHHHHHHHhcCCCCCceEEEecCchHHHH
Confidence 4466677777778876 34 34455433 233322 12212112356664 3
Q ss_pred HHhcCCHHHHHHHHHH-HHHHHH
Q 025222 171 LVELLTRKELQAVLAH-ELGHLK 192 (256)
Q Consensus 171 Ll~~L~~~EL~aVlaH-ElgHi~ 192 (256)
|++.-+.-.-+-|+|| ++||.-
T Consensus 99 Lme~Ntl~~q~LViAHv~yGHnd 121 (498)
T PRK11767 99 LMEENTMTMQALVIAHACYGHNS 121 (498)
T ss_pred HhccCcHHHHHHHHHHHHHhhhh
Confidence 5555566788889999 599964
No 124
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=24.05 E-value=1.7e+02 Score=28.87 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCcC-CCcEEEE------eCCCCCEEEEe----ec-CCCCEEEECHHHHhcCCHHHHHHHHHHHHHHH
Q 025222 124 ELHQLMTEAAEILNLE-APDLYVR------QSPVPNAYTLA----IS-GKKPFVVVHTSLVELLTRKELQAVLAHELGHL 191 (256)
Q Consensus 124 ~L~~~l~~~~~~l~i~-~p~vyv~------~~~~~NA~a~G----~~-~~~~~Ivl~~gLl~~L~~~EL~aVlaHElgHi 191 (256)
++++..++.-+.+|++ .|+.+.- .+.. ..++.+ ++ .+.++|..+.. .+.+.+.. +-||+||+
T Consensus 185 ~mf~~~~~ff~smgL~dl~~~fw~~s~~~rp~k~-~~~C~~sawd~~~~~d~rI~~c~~----~t~~D~~t-~~HE~GH~ 258 (477)
T cd06461 185 RMFKEAEEFFTSLGLPPMPPSFWTKSMLEKPTDR-EVVCHASAWDFYNGKDFRIKMCTK----VNMEDFVT-VHHEMGHI 258 (477)
T ss_pred HHHHHHHHHHHHCCCCcCChHHHhhccccCCCCC-CCccCcccccCCCCCCcceeeCCC----CCHHHHHH-HHHHHHHH
Confidence 4555566666677876 5544432 2222 334433 32 34567766554 35566655 45999999
Q ss_pred H
Q 025222 192 K 192 (256)
Q Consensus 192 ~ 192 (256)
.
T Consensus 259 ~ 259 (477)
T cd06461 259 Q 259 (477)
T ss_pred H
Confidence 7
No 125
>cd03083 TRX_Fd_NuoE_hoxF TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, hoxF; composed of proteins similar to the NAD-reducing hydrogenase (hoxS) alpha subunit of Alcaligenes eutrophus H16. HoxS is a cytoplasmic hydrogenase catalyzing the oxidation of molecular hydrogen accompanied by the reduction of NAD. It is composed of four structural subunits encoded by the genes hoxF, hoxU, hoxY and hoxH. The hoxF protein (or alpha subunit) is a fusion protein containing an N-terminal NuoE-like domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. HoxF may be involved
Probab=23.85 E-value=2.6e+02 Score=20.05 Aligned_cols=33 Identities=9% Similarity=0.221 Sum_probs=26.4
Q ss_pred EEEeecCCCCEEEECHHHHhcCCHHHHHHHHHH
Q 025222 154 YTLAISGKKPFVVVHTSLVELLTRKELQAVLAH 186 (256)
Q Consensus 154 ~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaH 186 (256)
.+.|+....|.+.+...+...++++.+..++.+
T Consensus 47 gClG~C~~~P~v~V~~~~y~~v~~~~v~~iv~~ 79 (80)
T cd03083 47 SCTGLCDQGPALLINNRVFTRLTPGRIDQIAEL 79 (80)
T ss_pred ceecCcCCCCeEEECCEEECCCCHHHHHHHHhc
Confidence 367777788999998877878899988877753
No 126
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=23.53 E-value=1.4e+02 Score=24.79 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhCcCC----Cc-EEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHH
Q 025222 125 LHQLMTEAAEILNLEA----PD-LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (256)
Q Consensus 125 L~~~l~~~~~~l~i~~----p~-vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVla 185 (256)
=.++++.+.+.+|++. ++ .+-+. ...+.|.++.-|.+.|+..+...++++.+..++.
T Consensus 91 ~~~ll~~l~~~Lgi~~gett~Dg~ftL~----~~~ClG~C~~aP~~~in~~~~~~lt~~~~~~il~ 152 (156)
T PRK05988 91 GDALAAHAKARLGIDFHQTTADGAVTLE----PVYCLGLCACSPAAMLDGEVHGRLDPQRLDALLA 152 (156)
T ss_pred HHHHHHHHHHHhCCCCCCcCCCCeEEEE----eeeecCccCCCCeEEECCEEeCCCCHHHHHHHHH
Confidence 3566777777888763 21 12122 3346777788899999999999999999988875
No 127
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=23.48 E-value=1.8e+02 Score=26.05 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=45.5
Q ss_pred cccCCCCcHHHHHHHHHHHHHhCcCCC-cEEEEe-CCC---CCEE-EEeecCCCCEEEECHHHHhcCCHHHHHHHHHH
Q 025222 115 VLVSKNQLPELHQLMTEAAEILNLEAP-DLYVRQ-SPV---PNAY-TLAISGKKPFVVVHTSLVELLTRKELQAVLAH 186 (256)
Q Consensus 115 v~v~~~~~p~L~~~l~~~~~~l~i~~p-~vyv~~-~~~---~NA~-a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVlaH 186 (256)
+++=+-+.|++.+.=+++-++.+...+ ....+. |-. ..+. ..|+.+.+|.+++..|++-.|+++++..++..
T Consensus 105 ~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~ 182 (260)
T TIGR00027 105 TRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAF 182 (260)
T ss_pred CeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHH
Confidence 455566778877666666665554322 222222 211 1111 23666778999999999999999999888764
No 128
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=23.26 E-value=2.2e+02 Score=24.10 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCcCCCc-----EEEEeCCCCCEEEEeecCCCCEEEECHHHHhcCCHHHHHHHHH
Q 025222 126 HQLMTEAAEILNLEAPD-----LYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLA 185 (256)
Q Consensus 126 ~~~l~~~~~~l~i~~p~-----vyv~~~~~~NA~a~G~~~~~~~Ivl~~gLl~~L~~~EL~aVla 185 (256)
.++++.+.+++|++.-+ .+-+. ...+.|.++.-|.+.|+......++++.+..++.
T Consensus 105 ~~ll~~l~~~Lgi~~gett~DG~ftL~----~~~ClG~C~~AP~~~Vn~~~~~~lt~e~v~~il~ 165 (169)
T PRK07571 105 AAILEDLENELGIKAGETTADGKLSLL----TARCLGACGIAPAVVFDGKVAGKQTPESVLEKVQ 165 (169)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCeEEEE----EecccCccCCCCeEEECCEEeCCCCHHHHHHHHH
Confidence 56777788888986321 12222 2236677778899999999999999999998886
No 129
>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily. BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.
Probab=22.24 E-value=43 Score=29.11 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHh
Q 025222 181 QAVLAHELGHLKC 193 (256)
Q Consensus 181 ~aVlaHElgHi~~ 193 (256)
.+++.||++|...
T Consensus 88 ~Gti~HEl~HaLG 100 (200)
T cd04281 88 FGIVVHELGHVIG 100 (200)
T ss_pred CchHHHHHHHHhc
Confidence 4799999999884
No 130
>PF10460 Peptidase_M30: Peptidase M30; InterPro: IPR019501 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family contains metallopeptidases belonging to MEROPS peptidase family M30 (hyicolysin family, clan MA). Hyicolysin has a zinc ion which is liganded by two histidine and one glutamate residue.
Probab=22.15 E-value=76 Score=30.28 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=22.4
Q ss_pred EEEECHHHHhcC---CHHHHHHHHHHHHHHHHh
Q 025222 164 FVVVHTSLVELL---TRKELQAVLAHELGHLKC 193 (256)
Q Consensus 164 ~Ivl~~gLl~~L---~~~EL~aVlaHElgHi~~ 193 (256)
++++....+..- +.+...+.||||+-|..+
T Consensus 120 ~~YiD~~~~~~~~~~~~~~~~sTlAHEfQHmIn 152 (366)
T PF10460_consen 120 YFYIDSETLYLGGNSGPDTVYSTLAHEFQHMIN 152 (366)
T ss_pred EEEEecHHhhccCCccHHHHHHHHHHHHHHHHH
Confidence 566776665322 357899999999999985
No 131
>COG4823 AbiF Abortive infection bacteriophage resistance protein [Defense mechanisms]
Probab=22.10 E-value=54 Score=29.94 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHH
Q 025222 177 RKELQAVLAHELGH 190 (256)
Q Consensus 177 ~~EL~aVlaHElgH 190 (256)
+-+++.||||++||
T Consensus 89 Et~iKs~iAyllg~ 102 (299)
T COG4823 89 ETEIKSVIAYLLGH 102 (299)
T ss_pred HHHHHHHHHHHhcc
Confidence 35799999999999
No 132
>PF13402 M60-like: Peptidase M60-like family; PDB: 4FCA_A.
Probab=22.10 E-value=3.2e+02 Score=24.48 Aligned_cols=32 Identities=22% Similarity=0.106 Sum_probs=17.6
Q ss_pred EEEECHHHHhc-CCHHHH---HHHHHHHHHHHHhcc
Q 025222 164 FVVVHTSLVEL-LTRKEL---QAVLAHELGHLKCDH 195 (256)
Q Consensus 164 ~Ivl~~gLl~~-L~~~EL---~aVlaHElgHi~~~H 195 (256)
.|..+.+..+. ++.+.+ .=-+.||+||..+.-
T Consensus 199 ~i~~~~~~~~~~l~~~~~~~~~WG~~HE~GH~~Q~~ 234 (307)
T PF13402_consen 199 PIGFPPNWMNELLNPNPLRKGGWGPWHELGHNHQQG 234 (307)
T ss_dssp EEEEETT--HHHH-HHHHHHH-HHHHHHHHHHH-BG
T ss_pred cEEeeCcHHhcccCHhHcCCCCeeehhhhhhhcCcc
Confidence 35555444433 455555 346899999999755
No 133
>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily. Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.
Probab=21.98 E-value=48 Score=28.34 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHh
Q 025222 181 QAVLAHELGHLKC 193 (256)
Q Consensus 181 ~aVlaHElgHi~~ 193 (256)
.+++.||++|...
T Consensus 78 ~G~i~HEl~HaLG 90 (182)
T cd04283 78 KGIIQHELLHALG 90 (182)
T ss_pred cchHHHHHHHHhC
Confidence 5899999999983
No 134
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=21.93 E-value=58 Score=27.26 Aligned_cols=82 Identities=16% Similarity=0.157 Sum_probs=45.1
Q ss_pred HHHHHHHcCCccccCCCCcHHHHHHHHHHHHHhCcC---CCcEEEEeCCC-CCE----EEEeecCCCCEEEECHHHHhcC
Q 025222 104 QIMLLENIGTSVLVSKNQLPELHQLMTEAAEILNLE---APDLYVRQSPV-PNA----YTLAISGKKPFVVVHTSLVELL 175 (256)
Q Consensus 104 r~~~~~~~g~~v~v~~~~~p~L~~~l~~~~~~l~i~---~p~vyv~~~~~-~NA----~a~G~~~~~~~Ivl~~gLl~~L 175 (256)
+.+++......++.=+-+.|++.+.=.++-++.+.. .++ |+--|-. .+- -..|+.++.|.+++..|++-.|
T Consensus 92 r~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~-~v~~Dl~~~~~~~~L~~~g~~~~~ptl~i~Egvl~Yl 170 (183)
T PF04072_consen 92 RAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYR-YVPADLRDDSWIDALPKAGFDPDRPTLFIAEGVLMYL 170 (183)
T ss_dssp HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESS-EEES-TTSHHHHHHHHHCTT-TTSEEEEEEESSGGGS
T ss_pred hHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCccee-EEeccccchhhHHHHHHhCCCCCCCeEEEEcchhhcC
Confidence 444444433355555566777665555544444322 122 3322211 100 0126667899999999999999
Q ss_pred CHHHHHHHHHH
Q 025222 176 TRKELQAVLAH 186 (256)
Q Consensus 176 ~~~EL~aVlaH 186 (256)
+++++..++.+
T Consensus 171 ~~~~~~~ll~~ 181 (183)
T PF04072_consen 171 SPEQVDALLRA 181 (183)
T ss_dssp -HHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99999998864
No 135
>PRK13267 archaemetzincin-like protein; Reviewed
Probab=21.91 E-value=75 Score=27.09 Aligned_cols=14 Identities=36% Similarity=0.634 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 025222 179 ELQAVLAHELGHLK 192 (256)
Q Consensus 179 EL~aVlaHElgHi~ 192 (256)
-+.-...||+||..
T Consensus 124 R~~k~~~HElGH~l 137 (179)
T PRK13267 124 RVRKEVTHELGHTL 137 (179)
T ss_pred HHHHHHHHHHHHHc
Confidence 44556899999995
No 136
>KOG3714 consensus Meprin A metalloprotease [Posttranslational modification, protein turnover, chaperones]
Probab=21.06 E-value=46 Score=32.02 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=20.2
Q ss_pred EeecCCC-CEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 156 LAISGKK-PFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 156 ~G~~~~~-~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.|..+.+ -.|-++.+-.+ .+++.|||+|...
T Consensus 141 VGr~gg~~q~~sl~~~C~~-------~G~i~HEl~HaLG 172 (411)
T KOG3714|consen 141 VGRRGGGQQLLSLGDGCDR-------FGTIVHELMHALG 172 (411)
T ss_pred eCccCCCccceecCCCcCc-------CchhHHHHHHHhh
Confidence 3554433 34555555332 8999999999984
No 137
>PHA02456 zinc metallopeptidase motif-containing protein
Probab=21.00 E-value=55 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=17.1
Q ss_pred CEEEECHHHHhcCCHHHHHHHHHHHHHHHHh
Q 025222 163 PFVVVHTSLVELLTRKELQAVLAHELGHLKC 193 (256)
Q Consensus 163 ~~Ivl~~gLl~~L~~~EL~aVlaHElgHi~~ 193 (256)
.+|.|...--+. --+--++||++|+-+
T Consensus 66 ~~i~IDP~~~~K----GC~~TL~HEL~H~WQ 92 (141)
T PHA02456 66 GWIEIDPDYANK----GCRDTLAHELNHAWQ 92 (141)
T ss_pred eEEEECCccccc----chHHHHHHHHHHHHh
Confidence 356666554333 334467999999875
No 138
>cd02980 TRX_Fd_family Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.
Probab=20.56 E-value=3e+02 Score=18.98 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHHhCcCCCcEEEEeCCCCCEEEEeecCCCCEEEEC--HHHHhcCCHHHHHHHHH
Q 025222 122 LPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVH--TSLVELLTRKELQAVLA 185 (256)
Q Consensus 122 ~p~L~~~l~~~~~~l~i~~p~vyv~~~~~~NA~a~G~~~~~~~Ivl~--~gLl~~L~~~EL~aVla 185 (256)
.+++++.+++..+..+.+ .++-+.... +.|.....|.+.+. ..+...++++.+..++.
T Consensus 16 ~~~l~~~l~~~~~~~~~~-~~v~v~~~~-----Clg~C~~~P~v~i~~~~~~y~~v~~~~~~~il~ 75 (77)
T cd02980 16 AEELLEALEKELGIRGGD-GRVTVERVG-----CLGACGLAPVVVVYPDGVWYGRVTPEDVEEIVE 75 (77)
T ss_pred HHHHHHHHHHHHhhhcCC-CeEEEEEcC-----CcCcccCCCEEEEeCCCeEEccCCHHHHHHHHH
Confidence 567888888877665542 235555443 33444566888888 66777789998888775
No 139
>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.
Probab=20.49 E-value=58 Score=30.28 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHh-cc
Q 025222 179 ELQAVLAHELGHLKC-DH 195 (256)
Q Consensus 179 EL~aVlaHElgHi~~-~H 195 (256)
....+++||+||--. +|
T Consensus 192 s~~~~f~HE~GH~~GL~H 209 (305)
T PF10462_consen 192 SYGNEFSHELGHNFGLGH 209 (305)
T ss_dssp -SHHHHHHHHHHTTT--S
T ss_pred CccceeehhhhhhcCCCC
Confidence 367899999999763 45
No 140
>cd06158 S2P-M50_like_1 Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.
Probab=20.38 E-value=67 Score=27.19 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 025222 180 LQAVLAHELGHLK 192 (256)
Q Consensus 180 L~aVlaHElgHi~ 192 (256)
+-++..||++|-.
T Consensus 9 ~~~i~~HE~aHa~ 21 (181)
T cd06158 9 LLAITLHEFAHAY 21 (181)
T ss_pred HHHHHHHHHHHHH
Confidence 3478999999986
Done!