Query 025223
Match_columns 256
No_of_seqs 214 out of 1352
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 03:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025223.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025223hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02498 omega-3 fatty acid de 100.0 7.1E-54 1.5E-58 413.2 20.7 227 1-238 1-231 (450)
2 PF11960 DUF3474: Domain of un 100.0 7.1E-38 1.5E-42 258.3 10.3 130 1-145 1-135 (136)
3 PLN02598 omega-6 fatty acid de 100.0 3E-33 6.5E-38 269.3 16.7 164 56-237 39-205 (421)
4 PLN02505 omega-6 fatty acid de 100.0 2.3E-31 5E-36 253.4 16.2 137 101-237 23-166 (381)
5 cd03507 Delta12-FADS-like The 99.9 6.2E-23 1.4E-27 182.0 12.1 113 125-237 1-113 (222)
6 COG3239 DesA Fatty acid desatu 99.9 2.5E-21 5.5E-26 182.2 12.3 120 108-227 15-134 (343)
7 cd03511 Rhizopine-oxygenase-li 99.8 7.3E-20 1.6E-24 166.6 14.8 126 122-249 9-135 (285)
8 cd03508 Delta4-sphingolipid-FA 99.8 2.7E-20 5.8E-25 171.8 10.5 133 115-253 2-138 (289)
9 cd03510 Rhizobitoxine-FADS-lik 99.7 2.9E-18 6.2E-23 147.4 8.1 91 138-229 2-93 (175)
10 PLN02579 sphingolipid delta-4 99.7 2E-17 4.4E-22 155.0 12.9 124 102-229 17-147 (323)
11 PLN03198 delta6-acyl-lipid des 99.7 2.7E-17 5.8E-22 162.8 12.9 119 110-228 188-313 (526)
12 PLN03199 delta6-acyl-lipid des 99.7 2.2E-17 4.9E-22 161.7 12.1 119 110-228 113-240 (485)
13 cd03513 CrtW_beta-carotene-ket 99.7 4.2E-17 9.1E-22 146.0 12.3 84 155-239 30-116 (225)
14 cd03514 CrtR_beta-carotene-hyd 99.7 4.3E-17 9.3E-22 143.4 8.9 78 152-229 19-96 (207)
15 cd03509 DesA_FADS-like Fatty a 99.6 4.3E-15 9.3E-20 137.1 11.8 75 160-235 30-106 (288)
16 cd03506 Delta6-FADS-like The D 99.6 1.6E-15 3.4E-20 132.2 7.7 73 160-232 3-75 (204)
17 PF00487 FA_desaturase: Fatty 99.6 4.8E-15 1E-19 126.2 6.5 78 154-231 3-80 (257)
18 KOG4232 Delta 6-fatty acid des 99.5 6.9E-13 1.5E-17 127.4 12.8 124 99-227 87-214 (430)
19 cd01060 Membrane-FADS-like The 99.4 6.2E-13 1.3E-17 104.7 6.1 59 170-228 14-72 (122)
20 KOG2987 Fatty acid desaturase 99.4 9.4E-13 2E-17 120.0 7.7 127 104-233 15-149 (324)
21 cd03512 Alkane-hydroxylase Alk 98.8 2.5E-08 5.3E-13 93.4 9.4 87 153-247 68-156 (314)
22 PLN02220 delta-9 acyl-lipid de 96.0 0.043 9.4E-07 51.6 9.2 48 178-226 80-127 (299)
23 COG1398 OLE1 Fatty-acid desatu 95.8 0.026 5.6E-07 52.6 6.6 50 176-225 67-117 (289)
24 cd03505 Delta9-FADS-like The D 94.7 0.13 2.9E-06 45.0 7.5 47 179-226 28-74 (178)
25 KOG1600 Fatty acid desaturase 91.9 0.7 1.5E-05 44.0 7.8 47 178-224 91-137 (321)
26 PF13829 DUF4191: Domain of un 76.2 8 0.00017 35.2 6.3 59 109-168 8-66 (224)
27 cd03509 DesA_FADS-like Fatty a 58.9 80 0.0017 29.4 9.3 42 173-223 200-243 (288)
28 PF08557 Lipid_DES: Sphingolip 54.2 6.2 0.00013 26.6 0.8 27 102-128 9-38 (39)
29 PF09396 Thrombin_light: Throm 51.4 6.5 0.00014 27.7 0.6 9 7-15 20-28 (49)
30 PF00487 FA_desaturase: Fatty 51.2 31 0.00066 28.9 4.9 13 210-222 219-231 (257)
31 PLN02601 beta-carotene hydroxy 49.9 47 0.001 31.4 6.1 46 160-217 211-259 (303)
32 cd03513 CrtW_beta-carotene-ket 45.7 1.6E+02 0.0034 26.6 8.7 12 211-222 206-217 (225)
33 PLN02434 fatty acid hydroxylas 41.3 1.4E+02 0.0031 27.4 7.8 12 211-222 122-133 (237)
34 PLN02598 omega-6 fatty acid de 30.1 2E+02 0.0043 28.5 7.3 62 161-222 284-351 (421)
35 COG3125 CyoD Heme/copper-type 27.2 3.5E+02 0.0075 22.2 7.1 40 178-217 67-108 (111)
36 PLN02505 omega-6 fatty acid de 26.8 1.5E+02 0.0032 29.0 5.8 37 162-198 260-296 (381)
37 PF04298 Zn_peptidase_2: Putat 26.3 18 0.0004 32.9 -0.5 13 170-182 89-101 (222)
38 PF10520 Kua-UEV1_localn: Kua- 22.2 3.8E+02 0.0083 23.5 7.0 37 175-219 101-137 (178)
39 cd03512 Alkane-hydroxylase Alk 21.2 6.9E+02 0.015 23.4 9.5 13 210-222 264-276 (314)
No 1
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=7.1e-54 Score=413.18 Aligned_cols=227 Identities=76% Similarity=1.296 Sum_probs=190.0
Q ss_pred CccccccccCCCCCCCCCCCCCCCCC---C-CccccccCCcccccCCCCCcccCCCCCCCCceeEEEeeccccCCCCCch
Q 025223 1 MASWVLSECGLKPLPHIFPRPRTGIN---P-SKARFLHSKKSITDLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGED 76 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
||+||||||||||||++|++||+++. | +++++.+.++......+. ..++++.|+|+|+++|++|++...+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 77 (450)
T PLN02498 1 MASWVLSECGLRPLPRIYPRPRTGFISKNNLSKFRFLPSSKSYKRLPFD--LFSRGCSRERNWALNVSAPLTVPSGEEE- 77 (450)
T ss_pred CchhhhhhccCcccccccCCCccccccCCCccccccccccccccccccc--cccccccccccceeeecccCcccCCCcc-
Confidence 99999999999999999999998862 2 256666554332112222 1346677899999999999987556554
Q ss_pred HHhhhhcccCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025223 77 EEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVV 156 (256)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~l~eIR~aIPk~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l 156 (256)
|+++.+...|. +++.++++.++||||++|||++||++||++|++|++.|+++|+++++++++++.++++|++
T Consensus 78 ~~~~~~~~~~~--------~~~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~ 149 (450)
T PLN02498 78 EDEEGVNGVGE--------DEEGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVV 149 (450)
T ss_pred hhhhhhhhccc--------ccccccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 32221122222 1234589999999999999999999999999999999999999998888888777788999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCCCCCCChHHH
Q 025223 157 WPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPVSNSLC 236 (256)
Q Consensus 157 ~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~~P~~~~~~ 236 (256)
|+++|+++|++++++|+++|||||++||+++++|+++|.++++++++||..||.+|..||++||+.++||+|.|.+++.|
T Consensus 150 wpl~w~~~G~~~~gL~vl~HDcgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y 229 (450)
T PLN02498 150 WPLYWFAQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIY 229 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH
Q 025223 237 LW 238 (256)
Q Consensus 237 ~~ 238 (256)
+.
T Consensus 230 ~~ 231 (450)
T PLN02498 230 KS 231 (450)
T ss_pred Hh
Confidence 54
No 2
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=100.00 E-value=7.1e-38 Score=258.32 Aligned_cols=130 Identities=72% Similarity=1.192 Sum_probs=105.5
Q ss_pred CccccccccCCCCCCCCCCCCCCCC----CCCccccccCCcccc-cCCCCCcccCCCCCCCCceeEEEeeccccCCCCCc
Q 025223 1 MASWVLSECGLKPLPHIFPRPRTGI----NPSKARFLHSKKSIT-DLKLPSVKCSGDFSRDRNWGLKVSAPLRVAPLEGE 75 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (256)
||+||||||||||||++|++||+++ +++++++.+++.... ++. ...+.+.++|+|+++||+|++++++++|
T Consensus 1 MAswVLSECGlrPLp~iy~~pr~~~~s~~~~~~~r~~~~~~~~~~~~~----~~~~~~~~~r~w~l~VsaP~~~~~~~~e 76 (136)
T PF11960_consen 1 MASWVLSECGLRPLPRIYPRPRTGFISSTNPSKLRFLPSSKSVNLDSS----SPSSSGFRRRNWALNVSAPLRVPSVEEE 76 (136)
T ss_pred CcceeecccCCCcCccccCCCCCcccccCCCCccccCCcccccccccc----ccccccccccCcceeeeccCcccccccc
Confidence 9999999999999999999999997 366788877765422 222 1234567889999999999999998877
Q ss_pred hHHhhhhcccCCCCCCCCccccCCCCCCCCCCCCCHHHHHHHccccccccCchhHHHHHHHHHHHHHHHH
Q 025223 76 DEEERINGVNGIGNNKGVEEEEGSEFDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLA 145 (256)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~l~eIR~aIPk~~f~~d~~rsl~~l~~~llii~~l~ 145 (256)
|++. .+. .++++.+|||++|||||++|||++||+|||++|+|+++.|+++|++++++++
T Consensus 77 -~~~~----~~~------~~~~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 77 -EEEV----SSN------KEEEEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred -hhhc----ccc------ccccccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 4331 111 1234567999999999999999999999999999999999999999887764
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=3e-33 Score=269.26 Aligned_cols=164 Identities=30% Similarity=0.551 Sum_probs=140.1
Q ss_pred CCceeEEEeeccccCCCCCchHHhh-hhcccCCCCCCCCccccCCCCCCCCC--CCCCHHHHHHHccccccccCchhHHH
Q 025223 56 DRNWGLKVSAPLRVAPLEGEDEEER-INGVNGIGNNKGVEEEEGSEFDPGAP--PPFKLADIRAAIPKHCWVKDPWKSMS 132 (256)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--pp~~l~eIR~aIPk~~f~~d~~rsl~ 132 (256)
...-.-+|++|++.+++ |||+ ++|.|||. +.||| |++|++||+++||++||++|++|++.
T Consensus 39 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~~~~tl~~i~~aiP~~~F~~s~~rs~~ 101 (421)
T PLN02598 39 RQGNIQAVAVPVAPPSA----EERKQLAESYGFT-------------QIGEPLPDNVTLKDVVKTLPKEVFEIDDFKAWK 101 (421)
T ss_pred ccccceeeeecCCCCCH----HHHHHHHHhhChh-------------hcCCcCCCCcCHHHHHHhCCHHHcCCCHHHHHH
Confidence 34455678899877654 4554 89999993 34443 56899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHh
Q 025223 133 YVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISH 212 (256)
Q Consensus 133 ~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H 212 (256)
+++.+++++++.++++. ..+|++++++++++|++++++|+++|||+|+++|+++++|+++|.++++++++||..||.+|
T Consensus 102 ~l~~~i~~~~~~~~~~~-~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~~~~~lN~~vG~~~~~~ll~p~~~wr~~H 180 (421)
T PLN02598 102 TVAITVTSYALGLAAIA-VAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFSKNQLVEDIVGTIAFTPLIYPFEPWRIKH 180 (421)
T ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999987644433332 34688999999999999999999999999999999999999999999988999999999999
Q ss_pred hhhcCCCCCCCCCCCCCCCChHHHH
Q 025223 213 RTHHQNHGHVENDESWHPVSNSLCL 237 (256)
Q Consensus 213 ~~HH~~tn~~e~Dp~~~P~~~~~~~ 237 (256)
..||++||+.++|++|.|.+++.+.
T Consensus 181 ~~HH~~tn~~~~D~~~~p~t~~e~~ 205 (421)
T PLN02598 181 NTHHAHTNKLVMDTAWQPFRPHQFD 205 (421)
T ss_pred HHHccCcCCCCCCCCcCCcCHHHHh
Confidence 9999999999999999999887653
No 4
>PLN02505 omega-6 fatty acid desaturase
Probab=99.97 E-value=2.3e-31 Score=253.44 Aligned_cols=137 Identities=44% Similarity=0.870 Sum_probs=124.5
Q ss_pred CCCCCCCCCCHHHHHHHccccccccCchhHHHHHHHHHHHHHHHHHHHH-HH---H---HHHHHHHHHHHHHHHHHHHHh
Q 025223 101 FDPGAPPPFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAA-YL---N---NWVVWPLYWAAQGTMFWALFV 173 (256)
Q Consensus 101 ~~~~~~pp~~l~eIR~aIPk~~f~~d~~rsl~~l~~~llii~~l~~la~-~~---~---~W~l~~l~~vl~G~~~~~Lfv 173 (256)
..+.++|++|++|||++||++||++|++|++.++++|+++++++++++. ++ + .|++|+++|+++|+++.++|+
T Consensus 23 ~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~v 102 (381)
T PLN02505 23 RVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVWV 102 (381)
T ss_pred cCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999887766554 32 2 356788999999999999999
Q ss_pred hhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCCCCCCChHHHH
Q 025223 174 LGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPVSNSLCL 237 (256)
Q Consensus 174 L~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~~P~~~~~~~ 237 (256)
++|||||+++|+++++|+++|.+++.++++|+..||.+|..||++||+.++|++|.|.+++.+.
T Consensus 103 l~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~ 166 (381)
T PLN02505 103 IAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSALP 166 (381)
T ss_pred HHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCcCHHHHh
Confidence 9999999999999999999999999889999999999999999999999999999999977654
No 5
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=99.89 E-value=6.2e-23 Score=182.00 Aligned_cols=113 Identities=51% Similarity=1.056 Sum_probs=102.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccC
Q 025223 125 KDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVP 204 (256)
Q Consensus 125 ~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p 204 (256)
+|.++++.+++.|+++++++++++....+|++++++++++|+.++++++++|||+|+++++++++|+++|.++++++++|
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p 80 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCC
Confidence 46789999999999988777666544457888999999999999999999999999999999999999999999899999
Q ss_pred hHHhHHHhhhhcCCCCCCCCCCCCCCCChHHHH
Q 025223 205 YHGWRISHRTHHQNHGHVENDESWHPVSNSLCL 237 (256)
Q Consensus 205 ~~~WR~~H~~HH~~tn~~e~Dp~~~P~~~~~~~ 237 (256)
+..||..|..||+++|+.++|+++.|.++..+.
T Consensus 81 ~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~ 113 (222)
T cd03507 81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYA 113 (222)
T ss_pred hHHHHHHHHHHHhccCCCCCCCcccCcCHHHhh
Confidence 999999999999999999999999999986654
No 6
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=99.86 E-value=2.5e-21 Score=182.16 Aligned_cols=120 Identities=33% Similarity=0.546 Sum_probs=105.1
Q ss_pred CCCHHHHHHHccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCc
Q 025223 108 PFKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDH 187 (256)
Q Consensus 108 p~~l~eIR~aIPk~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~ 187 (256)
..+++.++..+|++++++|.......++....+++++.....++.+|+.++++++++|++..++++++|||+||+++|++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r 94 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNR 94 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Confidence 35788999999999999998877766666666665555555566668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCC
Q 025223 188 KLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDES 227 (256)
Q Consensus 188 ~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~ 227 (256)
++||++|+++.++.+.|+..||.+|.+||++||..++|++
T Consensus 95 ~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~ 134 (343)
T COG3239 95 WINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPE 134 (343)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHH
Confidence 9999999999988889999999999999999999999964
No 7
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=99.83 E-value=7.3e-20 Score=166.59 Aligned_cols=126 Identities=20% Similarity=0.149 Sum_probs=97.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhc
Q 025223 122 CWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSI 201 (256)
Q Consensus 122 ~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~l 201 (256)
++++|+++++..++.++++++++.+++....+++..+++.+++|+++.+++.++|||+|+++++++++|+++|.+++.++
T Consensus 9 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~ 88 (285)
T cd03511 9 LMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGLMI 88 (285)
T ss_pred HhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHHh
Confidence 57899999999999988877655544432333444444457889999999999999999999999999999999988899
Q ss_pred ccChHHhHHHhhhhcCCCCCCCCCCCC-CCCChHHHHHHHhhhccchhh
Q 025223 202 LVPYHGWRISHRTHHQNHGHVENDESW-HPVSNSLCLWYLCSDLCCITL 249 (256)
Q Consensus 202 g~p~~~WR~~H~~HH~~tn~~e~Dp~~-~P~~~~~~~~~l~~~l~G~~~ 249 (256)
+.|+..||..|..||+++|+.++||+. .+.++. .+++ ..+.+|...
T Consensus 89 ~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~-~~~~-~~~~~g~~~ 135 (285)
T cd03511 89 LLPPDFFRWSHARHHRYTQIPGRDPELAVPRPPT-LREY-LLALSGLPY 135 (285)
T ss_pred cCChHHHHHHHHHHhcCcCCCCCCCCCCCCCchH-HHHH-HHHHhChHH
Confidence 999999999999999999999899864 344432 3333 335555544
No 8
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=99.82 E-value=2.7e-20 Score=171.84 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=102.1
Q ss_pred HHHcc--ccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcccCCCCccCCchHHH
Q 025223 115 RAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVW-PLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNS 191 (256)
Q Consensus 115 R~aIP--k~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~-~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~ 191 (256)
.++.| |++|++|++..+..++..++.++++.++. ..+|+.. ++++++.|+++.++++++|||+|+++|+++++|+
T Consensus 2 ~~~~pei~~L~~~~~~~~~~~~~~v~~~~~~~~~l~--~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~ 79 (289)
T cd03508 2 LAKYPEIKKLFGPDPLTKWVVLGVVLLQIITAYLLR--DSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNR 79 (289)
T ss_pred cccchHHHHhcCCCcchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHH
Confidence 45666 48899999977666555554443322221 2355544 4566777888889999999999999999999999
Q ss_pred HHHHHHHhhcccChH-HhHHHhhhhcCCCCCCCCCCCCCCCChHHHHHHHhhhccchhhhhhh
Q 025223 192 VVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPVSNSLCLWYLCSDLCCITLFSVL 253 (256)
Q Consensus 192 vvG~l~~l~lg~p~~-~WR~~H~~HH~~tn~~e~Dp~~~P~~~~~~~~~l~~~l~G~~~~~~~ 253 (256)
++|.+++++++.|+. .||..|..||+++|.++.|||+.+. ....+.+|.+|++.+..+
T Consensus 80 ~~g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~----~~~~l~~~~~g~~~~~~~ 138 (289)
T cd03508 80 LFGIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTE----FEGKLFSTVLGKAIWVTL 138 (289)
T ss_pred HHHHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchH----HHHHHHhCchHHHHHHHH
Confidence 999998889999998 6999999999999999999998873 223346788888877644
No 9
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.75 E-value=2.9e-18 Score=147.42 Aligned_cols=91 Identities=30% Similarity=0.438 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHH-HhhcccChHHhHHHhhhhc
Q 025223 138 VVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLL-HSSILVPYHGWRISHRTHH 216 (256)
Q Consensus 138 llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~-~l~lg~p~~~WR~~H~~HH 216 (256)
++++++.++++.+.++|++++++++++|..+.++++++|||+|++++|++++|+++|.++ +.++++|+..||..|..||
T Consensus 2 w~~i~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~HH 81 (175)
T cd03510 2 WLVIAAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKHH 81 (175)
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHHh
Confidence 344555555665567899999999999999999999999999999999999999999865 4789999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 025223 217 QNHGHVENDESWH 229 (256)
Q Consensus 217 ~~tn~~e~Dp~~~ 229 (256)
+++|+ ++||++.
T Consensus 82 ~~~~~-~~Dpd~~ 93 (175)
T cd03510 82 RHLGT-EDDPDLA 93 (175)
T ss_pred CccCC-CCCCcHH
Confidence 99999 7888875
No 10
>PLN02579 sphingolipid delta-4 desaturase
Probab=99.74 E-value=2e-17 Score=155.00 Aligned_cols=124 Identities=22% Similarity=0.272 Sum_probs=93.1
Q ss_pred CCCCCCC-CCHHHHHHHcc--ccccccCchhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHhhh
Q 025223 102 DPGAPPP-FKLADIRAAIP--KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYL--NNWVVWPL-YWAAQGTMFWALFVLG 175 (256)
Q Consensus 102 ~~~~~pp-~~l~eIR~aIP--k~~f~~d~~rsl~~l~~~llii~~l~~la~~~--~~W~l~~l-~~vl~G~~~~~LfvL~ 175 (256)
.-.++|+ .++++|.++.| ++++..|+...... +..+++. + ++++++ .+|+.+++ ++++.|+.++++|+++
T Consensus 17 ~~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~-~~~v~~~--~-~~~~l~~~~~w~~~l~~a~~~~g~~~~~lf~~~ 92 (323)
T PLN02579 17 SYTDEPHASRRREILSKYPQIKELFGPDPWAFPKI-AAVVLLQ--L-CTATLLHDAGWPKILLVAYFFGGFLNHNLFLAI 92 (323)
T ss_pred CCchhhHHHHHHHHHHhchHhhcccCCCchHHHHH-HHHHHHH--H-HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 47788889998 47887777643222 1111111 1 222222 46776666 5677888888999999
Q ss_pred cccCCCCccCCchHHHHHHHHHHhhcccChH-HhHHHhhhhcCCCCCCCCCCCCC
Q 025223 176 HDCGHGSFSNDHKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWH 229 (256)
Q Consensus 176 HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~-~WR~~H~~HH~~tn~~e~Dp~~~ 229 (256)
|||+|+++|+++++|+++|.++++++++|+. +||..|..||+++|.++.|++..
T Consensus 93 HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~ 147 (323)
T PLN02579 93 HELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIP 147 (323)
T ss_pred HHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCC
Confidence 9999999999999999999999889999998 79999999999999999999844
No 11
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=99.73 E-value=2.7e-17 Score=162.82 Aligned_cols=119 Identities=18% Similarity=0.169 Sum_probs=95.7
Q ss_pred CHHHHHHHcc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCch
Q 025223 110 KLADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (256)
Q Consensus 110 ~l~eIR~aIP-k~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~ 188 (256)
.++++|+.+. .++|++++.+....++..++++++++++.+....++..++..+++|+++.++++++|||+|++++++++
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s~~~~~~ 267 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQVFETRW 267 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcH
Confidence 6778888875 689999998777777666555555444433333344455566788999999999999999999999999
Q ss_pred HHHHHHHHHH-hhcccChHHhHHHhhhhcCCCCCCC-----CCCCC
Q 025223 189 LNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVE-----NDESW 228 (256)
Q Consensus 189 lN~vvG~l~~-l~lg~p~~~WR~~H~~HH~~tn~~e-----~Dp~~ 228 (256)
+|+++|.+++ +++|.|+.+||.+|+.||++||..+ .|||-
T Consensus 268 ~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI 313 (526)
T PLN03198 268 LNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDI 313 (526)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCc
Confidence 9999999876 6689999999999999999999987 68863
No 12
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=99.73 E-value=2.2e-17 Score=161.74 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=95.6
Q ss_pred CHHHHHHHcc-ccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCch
Q 025223 110 KLADIRAAIP-KHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHK 188 (256)
Q Consensus 110 ~l~eIR~aIP-k~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~ 188 (256)
.++++++.+. .++|+++++.....++..++++++.++++++..+|++.+++.+++|+.++++++++|||+|++++++++
T Consensus 113 ~y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l~HDa~H~~~~~~~~ 192 (485)
T PLN03199 113 GYRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRK 192 (485)
T ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCch
Confidence 4678999887 589999987765555555544444444444445666667777889999999989999999999999999
Q ss_pred HHHHHHHHHH-hhcccChHHhHHHhhhhcCCCCCC-------CCCCCC
Q 025223 189 LNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHV-------ENDESW 228 (256)
Q Consensus 189 lN~vvG~l~~-l~lg~p~~~WR~~H~~HH~~tn~~-------e~Dp~~ 228 (256)
+|+++|.+++ ++.|.|..+|+.+|..||++||.. +.|||-
T Consensus 193 ~N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI 240 (485)
T PLN03199 193 HGDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDI 240 (485)
T ss_pred HHHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCC
Confidence 9999998886 668999999999999999999974 568863
No 13
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.72 E-value=4.2e-17 Score=145.95 Aligned_cols=84 Identities=25% Similarity=0.445 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCCcc-CCchHHHHHHHHHH-hhcccChHHhHHHhhhhcCCCCCCCCCCCCCCCC
Q 025223 155 VVWPLYWAAQGTMFWALFVLGHDCGHGSFS-NDHKLNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDESWHPVS 232 (256)
Q Consensus 155 ~l~~l~~vl~G~~~~~LfvL~HDcgHgS~f-rn~~lN~vvG~l~~-l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~~P~~ 232 (256)
.+.+++++++|++++++|+++|||+|++++ +++++|+++|.++. ++.+.|+..||.+|.+||+++|++ +|||+.+.+
T Consensus 30 ~~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~ 108 (225)
T cd03513 30 LLIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGN 108 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCC
Confidence 344456778999999999999999999999 79999999999985 678999999999999999999998 999998765
Q ss_pred -hHHHHHH
Q 025223 233 -NSLCLWY 239 (256)
Q Consensus 233 -~~~~~~~ 239 (256)
.+.+.||
T Consensus 109 ~~~~~~wy 116 (225)
T cd03513 109 PSGFLPWY 116 (225)
T ss_pred CCChHHHH
Confidence 3444544
No 14
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=99.70 E-value=4.3e-17 Score=143.42 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCCCC
Q 025223 152 NNWVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWH 229 (256)
Q Consensus 152 ~~W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~~ 229 (256)
..|+.++++.++.|+.+.++++++|||+|+++++++++|+++|.++.++++.|+..||.+|..||+++|++++|||+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~ 96 (207)
T cd03514 19 ISYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF 96 (207)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH
Confidence 346666677778888899999999999999999999999999999988899999999999999999999999999876
No 15
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.61 E-value=4.3e-15 Score=137.10 Aligned_cols=75 Identities=19% Similarity=0.177 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCC--CCCCCCCCCCCChHH
Q 025223 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHG--HVENDESWHPVSNSL 235 (256)
Q Consensus 160 ~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn--~~e~Dp~~~P~~~~~ 235 (256)
+.+++|......++++|||+|+++||++++|+++|.+. +.++.||..||.+|..||++|| +.++||+....+.+.
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~ 106 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQ 106 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHH
Confidence 44566777777789999999999999999999999885 3556999999999999999999 446788765554333
No 16
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=99.60 E-value=1.6e-15 Score=132.20 Aligned_cols=73 Identities=21% Similarity=0.296 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCCCCCCC
Q 025223 160 YWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPVS 232 (256)
Q Consensus 160 ~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~~P~~ 232 (256)
+.+++|+....+++++|||+|+++++++++|+++|.++..+++.|+..||.+|..||++||+.++||++.+.+
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~ 75 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLP 75 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCc
Confidence 4567788888889999999999999999999999999998899999999999999999999999999876533
No 17
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.56 E-value=4.8e-15 Score=126.21 Aligned_cols=78 Identities=38% Similarity=0.644 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCCCCCC
Q 025223 154 WVVWPLYWAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPV 231 (256)
Q Consensus 154 W~l~~l~~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~~P~ 231 (256)
|+.+++++++.|..+..++.++|||+|+++++++++|+++|.+++.+++.|+..||..|..||+++|++++||+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~ 80 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTR 80 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchh
Confidence 555666778888888999999999999999999999999999999889999999999999999999999988876554
No 18
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.45 E-value=6.9e-13 Score=127.41 Aligned_cols=124 Identities=13% Similarity=0.095 Sum_probs=93.9
Q ss_pred CCCCCCCCCC--CCHHHHHHHccc-cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 025223 99 SEFDPGAPPP--FKLADIRAAIPK-HCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMFWALFVLG 175 (256)
Q Consensus 99 ~~~~~~~~pp--~~l~eIR~aIPk-~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~~~LfvL~ 175 (256)
+.++..+..- -..+++|+++++ +++..++...+...+.+++..++.+ .+. |.+.+++.+++|+++++.++++
T Consensus 87 ~~~~~~~d~~~~~~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~-~~i----~~~~l~~a~Ll~~a~~Qs~~l~ 161 (430)
T KOG4232|consen 87 PSLDLEKDGFRNESFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAW-LLI----YLLSLISAVLLGLAWAQSGWLQ 161 (430)
T ss_pred cccccccchhhhHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455544443 255677777874 7788777766555444444332222 221 2335667788999999999999
Q ss_pred cccCCCCccCCchHHHHHHHHHH-hhcccChHHhHHHhhhhcCCCCCCCCCCC
Q 025223 176 HDCGHGSFSNDHKLNSVVGHLLH-SSILVPYHGWRISHRTHHQNHGHVENDES 227 (256)
Q Consensus 176 HDcgHgS~frn~~lN~vvG~l~~-l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~ 227 (256)
||.||.+++||+++|+++-.+++ ...|.|..+|+..|.+||.++|...+||+
T Consensus 162 Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpD 214 (430)
T KOG4232|consen 162 HDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPD 214 (430)
T ss_pred cccccccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCcc
Confidence 99999999999999999999887 78899999999999999999999999995
No 19
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.38 E-value=6.2e-13 Score=104.69 Aligned_cols=59 Identities=37% Similarity=0.535 Sum_probs=55.1
Q ss_pred HHHhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCCCC
Q 025223 170 ALFVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESW 228 (256)
Q Consensus 170 ~LfvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp~~ 228 (256)
+++.++|||+|+++++++++|++++.+++.+.+.|+..|+..|..||++++++++||+.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 67789999999999999999999999999899999999999998899999999888853
No 20
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.38 E-value=9.4e-13 Score=120.01 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=96.0
Q ss_pred CCCCC-CCHHHHHHHcc--ccccccCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccc
Q 025223 104 GAPPP-FKLADIRAAIP--KHCWVKDPWKSMSYVVRDVVV-VFGLAAAAAYLNNWVVWPL-YWAAQGTMFWALFVLGHDC 178 (256)
Q Consensus 104 ~~~pp-~~l~eIR~aIP--k~~f~~d~~rsl~~l~~~lli-i~~l~~la~~~~~W~l~~l-~~vl~G~~~~~LfvL~HDc 178 (256)
-|+|+ -|++||.++.| |++|+.||+.-+ ++..+++ .+.++++.-. ..|...+. +.++.|+....++...||.
T Consensus 15 TeePHasRR~eIL~kyPeIk~Lfg~dp~~kw--vv~~~Vi~Q~~~~~ll~d-l~W~~il~~AYf~gg~iNhsl~LAIHei 91 (324)
T KOG2987|consen 15 TEEPHASRRKEILAKYPEIKSLFGPDPNLKW--VVLGMVILQILAAYLLRD-LDWKWILFIAYFFGGFINHSLTLAIHEI 91 (324)
T ss_pred cCCcchhHHHHHHHhChHHHHHhCCCcchHH--HHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHhhhhhchhHHHHHHHh
Confidence 35565 48999999999 699999998653 3333332 2222222211 23543333 4577888889999899999
Q ss_pred CCCCccCC--chHHHHHHHHHHhhcccChH-HhHHHhhhhcCCCCCCCCCCCCCCCCh
Q 025223 179 GHGSFSND--HKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPVSN 233 (256)
Q Consensus 179 gHgS~frn--~~lN~vvG~l~~l~lg~p~~-~WR~~H~~HH~~tn~~e~Dp~~~P~~~ 233 (256)
+|...|++ +..|+++|.++.+|+++|+. ++|..|.+||++.+.++-|.+-....+
T Consensus 92 SHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~E 149 (324)
T KOG2987|consen 92 SHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFE 149 (324)
T ss_pred hhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhh
Confidence 99999988 88999999999999999998 999999999999999999876544434
No 21
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=98.79 E-value=2.5e-08 Score=93.38 Aligned_cols=87 Identities=21% Similarity=0.222 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhhhcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHh-hhhcCCCCCCCCCCCCCC
Q 025223 153 NWVVWPLYWAAQGTMFWAL-FVLGHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISH-RTHHQNHGHVENDESWHP 230 (256)
Q Consensus 153 ~W~l~~l~~vl~G~~~~~L-fvL~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H-~~HH~~tn~~e~Dp~~~P 230 (256)
+|+..+.+.+..|++...+ ...+||++| |++++|+++|.++..+. ++..|+..| ..||+++++ ++||+-..
T Consensus 68 ~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~t-p~DP~tar 140 (314)
T cd03512 68 SALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVAT-PEDPATAR 140 (314)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCCC-CCCccccc
Confidence 5666666667788887655 588899999 67999999999976544 455699999 589999998 46776555
Q ss_pred CChHHHHHHHhhhccch
Q 025223 231 VSNSLCLWYLCSDLCCI 247 (256)
Q Consensus 231 ~~~~~~~~~l~~~l~G~ 247 (256)
..+..|. |+.|.+.|.
T Consensus 141 ~ge~~y~-f~~r~~~g~ 156 (314)
T cd03512 141 RGESFYR-FLPRALVGS 156 (314)
T ss_pred cCccHHH-HHHHHHHHH
Confidence 5555554 666666663
No 22
>PLN02220 delta-9 acyl-lipid desaturase
Probab=95.99 E-value=0.043 Score=51.60 Aligned_cols=48 Identities=23% Similarity=0.174 Sum_probs=36.2
Q ss_pred cCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCC
Q 025223 178 CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (256)
Q Consensus 178 cgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp 226 (256)
-.|+||--++.+.-++..+..+..-.+.-.|-..|+.||+++.+++ ||
T Consensus 80 ~sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sDt~~-DP 127 (299)
T PLN02220 80 LAHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTDSDR-DP 127 (299)
T ss_pred HHhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC-Cc
Confidence 4788886677776666555555556677799999999999998854 55
No 23
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=95.77 E-value=0.026 Score=52.63 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=40.7
Q ss_pred ccc-CCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCC
Q 025223 176 HDC-GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVEND 225 (256)
Q Consensus 176 HDc-gHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~D 225 (256)
|-| +|.++.-.+.+.-++.....+....|...|-..|+.||+++.+++|+
T Consensus 67 HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~tDTd~DP 117 (289)
T COG1398 67 HRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKTDTDQDP 117 (289)
T ss_pred hhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhcccCCCCCC
Confidence 664 68888888888888876666678888899999999999999776554
No 24
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=94.75 E-value=0.13 Score=44.96 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=38.9
Q ss_pred CCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCCCC
Q 025223 179 GHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDE 226 (256)
Q Consensus 179 gHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~Dp 226 (256)
.|++|--++.+..++..+..+....+...|...|+.||+++.+++ ||
T Consensus 28 aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sDt~~-DP 74 (178)
T cd03505 28 AHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSDTDG-DP 74 (178)
T ss_pred hhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccCCCC-CC
Confidence 699998888888887776666677788899999999999999864 55
No 25
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=91.93 E-value=0.7 Score=44.00 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=35.6
Q ss_pred cCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCCC
Q 025223 178 CGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVEN 224 (256)
Q Consensus 178 cgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e~ 224 (256)
-.|.|+--++.+.-++...-.+.+=.+.-.|-..|+.||++|.++.|
T Consensus 91 wsHRSyKa~kpLr~fla~~~~~A~Qg~~~~WvrdHR~HHk~tdTD~D 137 (321)
T KOG1600|consen 91 WSHRSYKAPKPLRYFLAYCNTLAFQGDIIDWVRDHRVHHKFTDTDAD 137 (321)
T ss_pred cccccccCCccHHHHHHHHHHHhccCChhHHHhhhhhhccccccCCC
Confidence 47889877888877776665544444455899999999999999654
No 26
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=76.22 E-value=8 Score=35.25 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=32.9
Q ss_pred CCHHHHHHHccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025223 109 FKLADIRAAIPKHCWVKDPWKSMSYVVRDVVVVFGLAAAAAYLNNWVVWPLYWAAQGTMF 168 (256)
Q Consensus 109 ~~l~eIR~aIPk~~f~~d~~rsl~~l~~~llii~~l~~la~~~~~W~l~~l~~vl~G~~~ 168 (256)
=++++|+++.-- --+.|++..++.++.-++.+++...+.+.+++|++|++..++.|++.
T Consensus 8 ~~~~Qi~q~y~~-trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 8 GRRKQIWQAYKM-TRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLA 66 (224)
T ss_pred hHHHHHHHHHHH-HHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 367788877641 11245655544444433333333334444678888887777766654
No 27
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=58.88 E-value=80 Score=29.37 Aligned_cols=42 Identities=14% Similarity=-0.036 Sum_probs=23.4
Q ss_pred hhhcccCCCCccCCch--HHHHHHHHHHhhcccChHHhHHHhhhhcCCCCCCC
Q 025223 173 VLGHDCGHGSFSNDHK--LNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVE 223 (256)
Q Consensus 173 vL~HDcgHgS~frn~~--lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~tn~~e 223 (256)
...|.++...-.++.. .+.++..++ .....|.+||.++..+-
T Consensus 200 ~~Eh~~~~~~~~rs~~~~~~~~~~~l~---------~ninyH~~HH~~P~vP~ 243 (288)
T cd03509 200 FLEHRAHERPRGRTVINEAGGPLRLLF---------LNNNLHVVHHDLPTLPW 243 (288)
T ss_pred HhhccCCCCccCCceeeeCcHHHHHHH---------hcCCchHhhcCCCCCCc
Confidence 5678876544333332 233332221 13356999999998863
No 28
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=54.25 E-value=6.2 Score=26.57 Aligned_cols=27 Identities=22% Similarity=0.175 Sum_probs=21.4
Q ss_pred CCCCCCC-CCHHHHHHHcc--ccccccCch
Q 025223 102 DPGAPPP-FKLADIRAAIP--KHCWVKDPW 128 (256)
Q Consensus 102 ~~~~~pp-~~l~eIR~aIP--k~~f~~d~~ 128 (256)
.-.++|+ .++++|.++.| +++|+.|++
T Consensus 9 ~~~~ePH~~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 9 VYTDEPHASRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred eCCCCccHHHHHHHHHhChHHHHHhCCCCC
Confidence 3445666 49999999999 589999876
No 29
>PF09396 Thrombin_light: Thrombin light chain; InterPro: IPR018992 Thrombin is a Na+-activated, allosteric serine protease that functions in blood homeostasis, inflammation and wound healing []. Thrombin (or coagulation factor II) is an enzyme that cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, and (in complex with thrombomodulin) protein C []. Sodium binding is the major driving force behind the procoagulant, prothrombotic and signaling functions of the enzyme, but is dispensable for cleavage of the anticoagulant protein C []. Prothrombin is activated on the surface of a phospholipid membrane where factor Xa removes the activation peptide and cleaves the remaining part into light and heavy chains. This domain corresponds to the light chain of thrombin. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0007596 blood coagulation, 0005576 extracellular region; PDB: 3HKI_D 2OCV_A 3EDX_A 3HK6_C 2PV9_A 2PUX_A 3HK3_A 1HRT_L 1TOC_G 1ETT_L ....
Probab=51.44 E-value=6.5 Score=27.69 Aligned_cols=9 Identities=56% Similarity=1.346 Sum_probs=5.2
Q ss_pred cccCCCCCC
Q 025223 7 SECGLKPLP 15 (256)
Q Consensus 7 ~~~~~~~~~ 15 (256)
.+||+|||=
T Consensus 20 adCG~RPlF 28 (49)
T PF09396_consen 20 ADCGLRPLF 28 (49)
T ss_dssp TTTT--TTT
T ss_pred cccCcchhh
Confidence 369999984
No 30
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=51.25 E-value=31 Score=28.92 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=10.5
Q ss_pred HHhhhhcCCCCCC
Q 025223 210 ISHRTHHQNHGHV 222 (256)
Q Consensus 210 ~~H~~HH~~tn~~ 222 (256)
..|..||.++..+
T Consensus 219 ~~H~~HHl~P~vp 231 (257)
T PF00487_consen 219 NYHIEHHLFPGVP 231 (257)
T ss_pred CChHHhCCCCCcC
Confidence 3599999999764
No 31
>PLN02601 beta-carotene hydroxylase
Probab=49.88 E-value=47 Score=31.41 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-Hhhhcc-cCCCCccCCchHHHHHHHHHHhhcccChH-HhHHHhhhhcC
Q 025223 160 YWAAQGTMFWAL-FVLGHD-CGHGSFSNDHKLNSVVGHLLHSSILVPYH-GWRISHRTHHQ 217 (256)
Q Consensus 160 ~~vl~G~~~~~L-fvL~HD-cgHgS~frn~~lN~vvG~l~~l~lg~p~~-~WR~~H~~HH~ 217 (256)
+++-+|+...|+ +.+.|| ..|+-+--.+.. -.+|. .-+..|..||+
T Consensus 211 fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a------------~~~Y~rrl~~AHklHHa 259 (303)
T PLN02601 211 FGAGLGITVFGMAYMFVHDGLVHKRFPVGPIA------------NVPYLRKVAAAHQLHHT 259 (303)
T ss_pred HHHHHhHHHHHHHHHHHhhhhhccccccCCCC------------CCHHHHHHHHHHHhhcc
Confidence 345567666555 588899 456665211111 12222 44577999999
No 32
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=45.74 E-value=1.6e+02 Score=26.61 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=10.6
Q ss_pred HhhhhcCCCCCC
Q 025223 211 SHRTHHQNHGHV 222 (256)
Q Consensus 211 ~H~~HH~~tn~~ 222 (256)
.|.+||.++..+
T Consensus 206 yH~eHH~fP~~P 217 (225)
T cd03513 206 YHHEHHLSPSTP 217 (225)
T ss_pred cchhhccCCCCC
Confidence 699999999875
No 33
>PLN02434 fatty acid hydroxylase
Probab=41.26 E-value=1.4e+02 Score=27.38 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=9.6
Q ss_pred HhhhhcCCCCCC
Q 025223 211 SHRTHHQNHGHV 222 (256)
Q Consensus 211 ~H~~HH~~tn~~ 222 (256)
.|..||.++++.
T Consensus 122 lHg~HH~~P~D~ 133 (237)
T PLN02434 122 LHGCHHKHPMDG 133 (237)
T ss_pred HHHHhhcCCCCC
Confidence 489999888764
No 34
>PLN02598 omega-6 fatty acid desaturase
Probab=30.15 E-value=2e+02 Score=28.53 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHHh-hcccC-----hHHhHHHhhhhcCCCCCC
Q 025223 161 WAAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLHS-SILVP-----YHGWRISHRTHHQNHGHV 222 (256)
Q Consensus 161 ~vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~l-~lg~p-----~~~WR~~H~~HH~~tn~~ 222 (256)
+++.+..+..+..+.|-.-+-.+..+..+|..-|.+... -.-++ ...--..|..||-++..+
T Consensus 284 ~Lv~~~wl~~it~lhHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP 351 (421)
T PLN02598 284 WLGYHFWMSTFTMVHHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIP 351 (421)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCC
Confidence 333444444445677776666655666666655554421 11111 111224678888888764
No 35
>COG3125 CyoD Heme/copper-type cytochrome/quinol oxidase, subunit 4 [Energy production and conversion]
Probab=27.24 E-value=3.5e+02 Score=22.22 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=25.5
Q ss_pred cCCCCccCCchHHHHHHHHHHh--hcccChHHhHHHhhhhcC
Q 025223 178 CGHGSFSNDHKLNSVVGHLLHS--SILVPYHGWRISHRTHHQ 217 (256)
Q Consensus 178 cgHgS~frn~~lN~vvG~l~~l--~lg~p~~~WR~~H~~HH~ 217 (256)
-.|-+-.+..++|-....+..+ .+.+--..|-..+..||.
T Consensus 67 FlHM~~~~eg~w~~~~~iFt~~i~vivvvGS~Wvm~~~n~~m 108 (111)
T COG3125 67 FLHMNTKSEGRWNMGALIFTIFIIVIVVVGSIWVMHNLNHNM 108 (111)
T ss_pred HhcccCCcccceehHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 3577777888888777665542 344455577776666664
No 36
>PLN02505 omega-6 fatty acid desaturase
Probab=26.81 E-value=1.5e+02 Score=28.95 Aligned_cols=37 Identities=11% Similarity=0.057 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhcccCCCCccCCchHHHHHHHHHH
Q 025223 162 AAQGTMFWALFVLGHDCGHGSFSNDHKLNSVVGHLLH 198 (256)
Q Consensus 162 vl~G~~~~~LfvL~HDcgHgS~frn~~lN~vvG~l~~ 198 (256)
++.+.....++.++|---.--.++...+|-.-|.+..
T Consensus 260 lv~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 260 LIVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 3444455566688998777777788888888886643
No 37
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=26.35 E-value=18 Score=32.88 Aligned_cols=13 Identities=38% Similarity=0.631 Sum_probs=8.6
Q ss_pred HHHhhhcccCCCC
Q 025223 170 ALFVLGHDCGHGS 182 (256)
Q Consensus 170 ~LfvL~HDcgHgS 182 (256)
+..+-+|||||--
T Consensus 89 AvaVAAHEvGHAi 101 (222)
T PF04298_consen 89 AVAVAAHEVGHAI 101 (222)
T ss_pred HHHHHHHHHhHHH
Confidence 3345679999853
No 38
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=22.24 E-value=3.8e+02 Score=23.53 Aligned_cols=37 Identities=35% Similarity=0.379 Sum_probs=23.5
Q ss_pred hcccCCCCccCCchHHHHHHHHHHhhcccChHHhHHHhhhhcCCC
Q 025223 175 GHDCGHGSFSNDHKLNSVVGHLLHSSILVPYHGWRISHRTHHQNH 219 (256)
Q Consensus 175 ~HDcgHgS~frn~~lN~vvG~l~~l~lg~p~~~WR~~H~~HH~~t 219 (256)
.|-=+|...+ ...++..+-..-++.| |..|..||..+
T Consensus 101 ~HkWsH~~~~----~P~~V~~LQ~~gills----r~~H~~HH~aP 137 (178)
T PF10520_consen 101 FHKWSHTYKS----LPPWVRFLQDAGILLS----RKHHRIHHVAP 137 (178)
T ss_pred HHHHHcCCCC----CCHHHHHHHHCCcccC----chhhhccccCc
Confidence 4777777544 4555655555444555 46789999864
No 39
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=21.16 E-value=6.9e+02 Score=23.44 Aligned_cols=13 Identities=23% Similarity=0.342 Sum_probs=10.3
Q ss_pred HHhhhhcCCCCCC
Q 025223 210 ISHRTHHQNHGHV 222 (256)
Q Consensus 210 ~~H~~HH~~tn~~ 222 (256)
..|..||.++...
T Consensus 264 ~rHsdHH~~p~~~ 276 (314)
T cd03512 264 QRHSDHHAHPTRP 276 (314)
T ss_pred chhhhhccCCCCc
Confidence 4699999998654
Done!