Query 025223
Match_columns 256
No_of_seqs 214 out of 1352
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 06:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025223.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025223hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bei_A Prothrombin; serine pro 42.5 7.8 0.00027 25.7 0.8 8 8-15 16-23 (44)
2 1etr_L Epsilon-thrombin; serin 37.2 10 0.00036 25.7 0.8 8 8-15 21-28 (49)
3 3b9f_L Prothrombin; michaelis 37.2 10 0.00036 25.7 0.8 8 8-15 21-28 (49)
4 3rm2_L Thrombin light chain; s 26.9 20 0.00067 22.9 0.8 8 8-15 8-15 (36)
5 3plv_C 66 kDa U4/U6.U5 small n 14.1 61 0.0021 18.2 0.9 8 9-16 14-21 (21)
6 3cqb_A Probable protease HTPX 11.7 33 0.0011 25.8 -1.0 12 171-182 84-95 (107)
7 2l9u_A Receptor tyrosine-prote 11.0 1.5E+02 0.0053 18.7 2.2 21 191-211 12-33 (40)
8 2q14_A Phosphohydrolase; BT420 9.2 1.1E+02 0.0038 28.7 1.5 15 170-184 90-104 (410)
9 3b4r_A Putative zinc metallopr 8.4 1.7E+02 0.0059 24.8 2.2 12 172-183 50-61 (224)
10 2l35_A DAP12-NKG2C_TM; immunor 8.3 5.3E+02 0.018 18.1 4.4 30 122-151 1-30 (63)
No 1
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=42.54 E-value=7.8 Score=25.74 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.7
Q ss_pred ccCCCCCC
Q 025223 8 ECGLKPLP 15 (256)
Q Consensus 8 ~~~~~~~~ 15 (256)
+||+|||=
T Consensus 16 dCG~RPlF 23 (44)
T 3bei_A 16 DCGLRPLF 23 (44)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 69999984
No 2
>1etr_L Epsilon-thrombin; serine proteinase, hydrolase-hydrolase inhibitor complex; HET: MIT; 2.20A {Bos taurus} SCOP: b.47.1.2 PDB: 1bbr_L* 1ets_L* 1ett_L* 1hrt_L 1id5_L 1mkw_L 1mkx_L 1tbq_L 1tbr_L 1toc_A 1ucy_L* 1uvt_L* 1uvu_L* 1vit_L* 1ycp_L 2ody_A*
Probab=37.23 E-value=10 Score=25.69 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.7
Q ss_pred ccCCCCCC
Q 025223 8 ECGLKPLP 15 (256)
Q Consensus 8 ~~~~~~~~ 15 (256)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 1etr_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999985
No 3
>3b9f_L Prothrombin; michaelis complex, acute phase, blood coagulation, cleavage of basic residues, disease mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens} PDB: 1tb6_L* 2b5t_A* 1jou_A* 3gis_A 1jmo_L*
Probab=37.23 E-value=10 Score=25.69 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.7
Q ss_pred ccCCCCCC
Q 025223 8 ECGLKPLP 15 (256)
Q Consensus 8 ~~~~~~~~ 15 (256)
+||+|||=
T Consensus 21 dCG~RPlF 28 (49)
T 3b9f_L 21 DCGLRPLF 28 (49)
T ss_dssp TTTCCTTT
T ss_pred ccccchhH
Confidence 49999985
No 4
>3rm2_L Thrombin light chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_L* 1a3e_L* 1a46_L* 1a4w_L* 1a5g_L* 1a61_L* 1abi_L* 1abj_L* 1ad8_L* 1ae8_L* 1afe_L* 1a3b_L* 1ai8_L* 1aix_L* 1awf_L* 1awh_A* 1ay6_L* 1b5g_L* 1b7x_A 1ba8_A* ...
Probab=26.88 E-value=20 Score=22.85 Aligned_cols=8 Identities=63% Similarity=1.468 Sum_probs=6.6
Q ss_pred ccCCCCCC
Q 025223 8 ECGLKPLP 15 (256)
Q Consensus 8 ~~~~~~~~ 15 (256)
.||+|||=
T Consensus 8 ~CG~rPlf 15 (36)
T 3rm2_L 8 DCGLRPLF 15 (36)
T ss_dssp TTTCCTTT
T ss_pred ccccCchh
Confidence 59999985
No 5
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=14.11 E-value=61 Score=18.17 Aligned_cols=8 Identities=50% Similarity=0.804 Sum_probs=6.6
Q ss_pred cCCCCCCC.....
Q 025223 9 CGLKPLPH..... 16 (256)
Q Consensus 9 ~~~~~~~~..... 16 (256)
-||+|+|.
T Consensus 14 lGLkplp~..... 21 (21)
T 3plv_C 14 LGLKLIPPxxxxx 26 (26)
T ss_dssp TTCCCCCC.....
T ss_pred cCCCCCCC.....
Confidence 69999983
No 6
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=11.68 E-value=33 Score=25.80 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=9.2
Q ss_pred HHhhhcccCCCC
Q 025223 171 LFVLGHDCGHGS 182 (256)
Q Consensus 171 LfvL~HDcgHgS 182 (256)
.++++||.||..
T Consensus 84 ~aVlaHElgH~~ 95 (107)
T 3cqb_A 84 EAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358899999864
No 7
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=11.04 E-value=1.5e+02 Score=18.74 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=12.0
Q ss_pred HHHHHHHH-hhcccChHHhHHH
Q 025223 191 SVVGHLLH-SSILVPYHGWRIS 211 (256)
Q Consensus 191 ~vvG~l~~-l~lg~p~~~WR~~ 211 (256)
-++|..+. +.++..|-.||-.
T Consensus 12 ~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEccc
Confidence 34554443 3456667788843
No 8
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=9.25 E-value=1.1e+02 Score=28.68 Aligned_cols=15 Identities=53% Similarity=0.831 Sum_probs=11.6
Q ss_pred HHHhhhcccCCCCcc
Q 025223 170 ALFVLGHDCGHGSFS 184 (256)
Q Consensus 170 ~LfvL~HDcgHgS~f 184 (256)
.+..|.||.||+-|+
T Consensus 90 ~~AaLlHDiGh~Pfs 104 (410)
T 2q14_A 90 QAAILLHDIGHGPFS 104 (410)
T ss_dssp HHHHHHTTTTCCTTH
T ss_pred HHHHHHhccCCCccc
Confidence 344578999999876
No 9
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=8.40 E-value=1.7e+02 Score=24.83 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=9.3
Q ss_pred HhhhcccCCCCc
Q 025223 172 FVLGHDCGHGSF 183 (256)
Q Consensus 172 fvL~HDcgHgS~ 183 (256)
.++.||.||.-.
T Consensus 50 ~v~~HElgH~~~ 61 (224)
T 3b4r_A 50 SVVLHELGHSYV 61 (224)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367799999865
No 10
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=8.34 E-value=5.3e+02 Score=18.11 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=22.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 025223 122 CWVKDPWKSMSYVVRDVVVVFGLAAAAAYL 151 (256)
Q Consensus 122 ~f~~d~~rsl~~l~~~llii~~l~~la~~~ 151 (256)
|++-|+..-...++.|+++.++++.+.+|+
T Consensus 1 CiELd~~tvaGIIv~DIi~TllLal~VY~~ 30 (63)
T 2l35_A 1 CSTVSPGVLAGIVVGDLVLTVLIALAVYFL 30 (63)
T ss_dssp CCSSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeccchheehhHHHHHHHHHHHHHHHHhh
Confidence 567788888888888988776666555554
Done!