BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025224
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T17|A Chain A, Solution Structure Of The 18 Kda Protein Cc1736 From
Caulobacter Crescentus: The Northeast Structural
Genomics Consortium Target Ccr19
Length = 148
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 13/146 (8%)
Query: 104 RVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDG---SFDAELEIGFKFLVESYV 160
+VL Y+P+QLF++V VD Y FVPW DG + DAE ++GF FL E +
Sbjct: 8 KVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQVGFSFLREKFA 67
Query: 161 SHVELNRPKFVKTTASDSSL----FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQ 216
+ V ++ + D SL F L N W F P + F+++F F S L
Sbjct: 68 TRVRRDK----DARSIDVSLLYGPFKRLNNGWRFM--PEGDATRVEFVIEFAFKSALLDA 121
Query: 217 AASMFFKEVVSRLVGSFSERCRLIYG 242
+ +L+ F R + ++G
Sbjct: 122 MLAANVDRAAGKLIACFEARAQQLHG 147
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 120 VDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYV-------SHVELNRPKFVK 172
++L + C E NP+ + EL++ + +++ ++ +H EL R V
Sbjct: 32 MELSPDLISACLALEKYLDNPNALTERELKVAYTTVLQEWLRLACRSDAHPELVRRHLVT 91
Query: 173 TTASDSSLFDHLINIWEFN 191
A + L D+++NI + N
Sbjct: 92 FRAMSARLLDYVVNIADSN 110
>pdb|3H1T|A Chain A, The Fragment Structure Of A Putative Hsdr Subunit Of A
Type I Restriction Enzyme From Vibrio Vulnificus Yj016
Length = 590
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 18 TTGSRHLISSAKSDGQLRMLNQFRRLCGITGIETSSVHKLIGAHQNISSSLANFCQN 74
TTG L+S + +L F+RLCG GI+ + L+ + ++S + Q
Sbjct: 133 TTGEEQLLSRFPTPDEL-----FKRLCGDEGIKDEDLDTLLSPYHHVSGYSPRYYQQ 184
>pdb|3VI3|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI3|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece
(Ligand-Free Form)
pdb|3VI4|B Chain B, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
pdb|3VI4|D Chain D, Crystal Structure Of Alpha5beta1 Integrin Headpiece In
Complex With Rgd Peptide
Length = 454
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 63/153 (41%), Gaps = 13/153 (8%)
Query: 92 EGDVLSKVYEERRVLGY--SPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFD--AE 147
+G+V +++ ++R+ G SPE FD + V + + W + +L + D F +
Sbjct: 208 KGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAGD 267
Query: 148 LEIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDF 207
++G L H+E N + + D HL+ S F V
Sbjct: 268 GKLGGIVLPNDGQCHLENNM--YTMSHYYDYPSIAHLVQKL------SENNIQTIFAVTE 319
Query: 208 KFHSPLYRQAASMFFKEVVSRLVGSFSERCRLI 240
+F P+Y++ ++ K V L + S +LI
Sbjct: 320 EFQ-PVYKELKNLIPKSAVGTLSANSSNVIQLI 351
>pdb|6FIV|A Chain A, Structural Studies Of Hiv And Fiv Proteases Complexed With
An Efficient Inhibitor Of Fiv Pr
Length = 113
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 81 RRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHN 139
R+ +GVG G+ G V+ E R Y + +F V ++ VP R ++K N
Sbjct: 50 RQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGNVCVLEDNSLIVPLLGRDNMIKFN 108
>pdb|3GGR|B Chain B, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 286
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 4 FMPVSKALGSLVSRTTG-SRHLISSAKSDGQLRMLNQFRRLCGIT 47
++PV K + S+V + S HL+ A DG+L + + +C T
Sbjct: 165 YLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTT 209
>pdb|3G65|C Chain C, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 280
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 4 FMPVSKALGSLVSRTTG-SRHLISSAKSDGQLRMLNQFRRLCGIT 47
++PV K + S+V + S HL+ A DG+L + + +C T
Sbjct: 159 YLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTT 203
>pdb|1FKA|R Chain R, Structure Of Functionally Activated Small Ribosomal
Subunit At 3.3 A Resolution
pdb|1FJG|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotics Streptomycin,
Spectinomycin, And Paromomycin
pdb|1G1X|C Chain C, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
Ribosomal Rna
pdb|1G1X|H Chain H, Structure Of Ribosomal Proteins S15, S6, S18, And 16s
Ribosomal Rna
pdb|1HR0|R Chain R, Crystal Structure Of Initiation Factor If1 Bound To The
30s Ribosomal Subunit
pdb|1HNW|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Tetracycline
pdb|1HNX|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Pactamycin
pdb|1HNZ|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With Hygromycin B
pdb|1GIX|U Chain U, Crystal Structure Of The Ribosome At 5.5 A Resolution.
This File, 1gix, Contains The 30s Ribosome Subunit,
Three Trna, And Mrna Molecules. 50s Ribosome Subunit Is
In The File 1giy
pdb|1IBK|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With The Antibiotic Paromomycin
pdb|1IBL|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site And With The Antibiotic Paromomycin
pdb|1IBM|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In Complex With A Messenger Rna Fragment And
Cognate Transfer Rna Anticodon Stem-Loop Bound At The A
Site
pdb|1JGO|U Chain U, The Path Of Messenger Rna Through The Ribosome. This File,
1jgo, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGP|U Chain U, The Path Of Messenger Rna Through The Ribosome. This File,
1jgp, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1JGQ|U Chain U, The Path Of Messenger Rna Through The Ribosome. This File,
1jgq, Contains The 30s Ribosome Subunit, Three Trna, And
Mrna Molecules. 50s Ribosome Subunit Is In The File 1giy
pdb|1J5E|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit
pdb|1N32|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The First Codon
Position At The A Site With Paromomycin
pdb|1N33|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Bound To Codon And Near-Cognate Transfer Rna
Anticodon Stem-Loop Mismatched At The Second Codon
Position At The A Site With Paromomycin
pdb|1N34|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Codon And
Crystallographically Disordered Near-Cognate Transfer
Rna Anticodon Stem-Loop Mismatched At The First Codon
Position
pdb|1N36|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit In The Presence Of Crystallographically
Disordered Codon And Near-cognate Transfer Rna Anticodon
Stem-loop Mismatched At The Second Codon Position
pdb|1ML5|U Chain U, Structure Of The E. Coli Ribosomal Termination Complex
With Release Factor 2
pdb|1XMO|R Chain R, Crystal Structure Of Mnm5u34t6a37-Trnalysuuu Complexed
With Aag-Mrna In The Decoding Center
pdb|1XMQ|R Chain R, Crystal Structure Of T6a37-Asllysuuu Aaa-Mrna Bound To The
Decoding Center
pdb|1XNQ|R Chain R, Structure Of An Inosine-Adenine Wobble Base Pair Complex
In The Context Of The Decoding Center
pdb|1XNR|R Chain R, Crystal Structure Of An Inosine-Cytosine Wobble Base Pair
In The Context Of The Decoding Center
pdb|1YL4|U Chain U, Crystal Structure Of 70s Ribosome With Thrs Operator And
Trnas. 30s Subunit. The Coordinates For The 50s Subunit
Are In The Pdb Entry 1yl3
pdb|2B64|R Chain R, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Subunit, Trnas, Mrna And
Release Factor Rf1 From A Crystal Structure Of The Whole
Ribosomal Complex". The Entire Crystal Structure
Contains One 70s Ribosome, Trnas, Mrna And Release
Factor Rf1 And Is Described In Remark 400.
pdb|2B9M|R Chain R, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2
From A Crystal Structure Of The Whole Ribosomal Complex.
This File Contains The 30s Ribosomal Subunit, Trnas,
Mrna And Release Factor Rf2 From A Crystal Structure Of
The Whole Ribosomal Complex". The Entire Crystal
Structure Contains One 70s Ribosome, Trnas, Mrna And
Release Factor Rf2 And Is Described In Remark 400.
pdb|2B9O|R Chain R, 30s Ribosomal Subunit, Trnas And Mrna From A Crystal
Structure Of The Whole Ribosomal Complex With A Stop
Codon In The A-Site. This File Contains The 30s Subunit,
Trnas And Mrna From A Crystal Structure Of The Whole
Ribosomal Complex With A Stop Codon In The A-Site And Is
Described In Remark 400.
pdb|2F4V|R Chain R, 30s Ribosome + Designer Antibiotic
pdb|2HHH|R Chain R, Crystal Structure Of Kasugamycin Bound To The 30s
Ribosomal Subunit
pdb|2HGI|U Chain U, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgi Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgj.
pdb|2HGP|U Chain U, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgp Contains 30s Ribosomal Subunit. The 50s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgq.
pdb|2HGR|U Chain U, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgr Contains 30s
Ribosomal Subunit. The 50s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgu.
pdb|2VQE|R Chain R, Modified Uridines With C5-methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-g
Wobble Pairing During Decoding
pdb|2VQF|R Chain R, Modified Uridines With C5-Methylene Substituents At The
First Position Of The Trna Anticodon Stabilize U-G
Wobble Pairing During Decoding
pdb|3OTO|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From A Ksga
Mutant Of Thermus Thermophilus (Hb8)
pdb|3T1H|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aaa-Codon In The A-Site And Paromomycin
pdb|3T1Y|R Chain R, Structure Of The Thermus Thermophilus 30s Ribosomal
Subunit Complexed With A Human Anti-Codon Stem Loop
(Hasl) Of Transfer Rna Lysine 3 (Trnalys3) Bound To An
Mrna With An Aag-Codon In The A-Site And Paromomycin
pdb|4AQY|R Chain R, Structure Of Ribosome-Apramycin Complexes
Length = 88
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 68 LANFCQNNGNVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSP 110
L F G +L RRR G+ G+E +L+K + R+LG P
Sbjct: 40 LKRFLSETGKILPRRR-TGL-SGKEQRILAKTIKRARILGLLP 80
>pdb|1PVJ|A Chain A, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
pdb|1PVJ|B Chain B, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
pdb|1PVJ|C Chain C, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
pdb|1PVJ|D Chain D, Crystal Structure Of The Streptococcal Pyrogenic Exotoxin
B (Speb)- Inhibitor Complex
Length = 368
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 134 EILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
EIL ++ GSFDA + +ESYV ++ N+
Sbjct: 69 EILGYSTSGSFDANGKENIASFMESYVEQIKENK 102
>pdb|1I94|R Chain R, Crystal Structures Of The Small Ribosomal Subunit With
Tetracycline, Edeine And If3
pdb|1I95|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Edeine
pdb|1I96|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With The Translation
Initiation Factor If3 (C-Terminal Domain)
pdb|1I97|R Chain R, Crystal Structure Of The 30s Ribosomal Subunit From
Thermus Thermophilus In Complex With Tetracycline
pdb|2E5L|R Chain R, A Snapshot Of The 30s Ribosomal Subunit Capturing Mrna Via
The Shine- Dalgarno Interaction
pdb|2ZM6|R Chain R, Crystal Structure Of The Thermus Thermophilus 30s
Ribosomal Subunit
Length = 87
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 68 LANFCQNNGNVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSP 110
L F G +L RRR G+ G+E +L+K + R+LG P
Sbjct: 39 LKRFLSETGKILPRRR-TGL-SGKEQRILAKTIKRARILGLLP 79
>pdb|1OQ1|A Chain A, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|B Chain B, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|C Chain C, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
pdb|1OQ1|D Chain D, Crystal Structure Of Protein Of Unknown Function With
Galectin-Like Fold From Bacillus Subtilis
Length = 223
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 182 DHLINIWEFNPGPSPGTCNLYF 203
D +I W+F+P PG C L+F
Sbjct: 61 DGIIVTWDFSPIEQPGLCXLFF 82
>pdb|3EQM|A Chain A, Crystal Structure Of Human Placental Aromatase Cytochrome
P450 In Complex With Androstenedione
pdb|3S79|A Chain A, Human Placental Aromatase Cytochrome P450 (Cyp19a1)
Refined At 2.75 Angstrom
pdb|3S7S|A Chain A, Crystal Structure Of Human Placental Aromatase Complexed
With Breast Cancer Drug Exemestane
pdb|4GL5|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg029 (Compound 4)
pdb|4GL7|A Chain A, Structure Of Human Placental Aromatase Complexed With
Designed Inhibitor Hddg046 (Compound 5)
Length = 503
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 71 FCQNNGNVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWC 130
+C G ++ RFL +G G + ++VY E + S E+ + + ++H
Sbjct: 52 YCMGIGPLISHGRFLWMGIGSACNYYNRVYGEFMRVWISGEETLIISKSSSMFH------ 105
Query: 131 QRSEILKHN 139
I+KHN
Sbjct: 106 ----IMKHN 110
>pdb|1PNS|R Chain R, Crystal Structure Of A Streptomycin Dependent Ribosome
From E. Coli, 30s Subunit Of 70s Ribosome. This File,
1pns, Contains The 30s Subunit, Two Trnas, And One Mrna
Molecule. The 50s Ribosomal Subunit Is In File 1pnu.
pdb|1PNX|R Chain R, Crystal Structure Of The Wild Type Ribosome From E. Coli,
30s Subunit Of 70s Ribosome. This File, 1pnx, Contains
Only Molecules Of The 30s Ribosomal Subunit. The 50s
Subunit Is In The Pdb File 1pny.
pdb|1VOQ|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOS|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOV|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOX|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1VOZ|R Chain R, Crystal Structure Of Five 70s Ribosomes From Escherichia
Coli In Complex With Protein Y. This File Contains The
30s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Five 70s Ribosomes And Is Described
In Remark 400.
pdb|1X18|H Chain H, Contact Sites Of Era Gtpase On The Thermus Thermophilus
30s Subunit
Length = 73
Score = 27.7 bits (60), Expect = 7.3, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 68 LANFCQNNGNVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSP 110
L F G +L RRR G+ G+E +L+K + R+LG P
Sbjct: 25 LKRFLSETGKILPRRR-TGL-SGKEQRILAKTIKRARILGLLP 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,684,265
Number of Sequences: 62578
Number of extensions: 307910
Number of successful extensions: 748
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 14
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)