BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025224
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFA6|CQ10A_XENLA Coenzyme Q-binding protein COQ10 homolog A, mitochondrial
OS=Xenopus laevis GN=coq10b-a PE=2 SV=1
Length = 247
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 98/152 (64%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS +++++VV+ V+ Y FVPWC++S ++ G A+LE+GF ++E
Sbjct: 85 KEYSERRIMGYSMQEMYEVVSNVEEYKLFVPWCKKSTVISKR-TGYAKAQLEVGFPPILE 143
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPS--PGTCNLYFLVDFKFHSPLYR 215
Y S + L RP VK +D LF+HL +IW F+PG P TC + F + F+F S L+
Sbjct: 144 RYTSILTLVRPHLVKAVCTDGRLFNHLESIWRFSPGIPGYPRTCTVDFSISFEFRSLLHS 203
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A++FF EVV ++V +F R IYGPE PI
Sbjct: 204 QLATVFFDEVVKQMVAAFERRAGKIYGPETPI 235
>sp|Q5RD79|CQ10B_PONAB Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Pongo
abelii GN=COQ10B PE=2 SV=1
Length = 238
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR+LGYS ++++DVV+ V+ Y FVPWC++S+++ G LEIGF ++E
Sbjct: 76 KEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKR-SGYCKTRLEIGFPPVLE 134
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL IW F+PG P P TC L F + F+F S L+
Sbjct: 135 RYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 194
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A++FF EVV ++V +F R +YGPE I
Sbjct: 195 QLATLFFDEVVKQMVAAFERRACKLYGPETNI 226
>sp|Q9H8M1|CQ10B_HUMAN Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Homo
sapiens GN=COQ10B PE=2 SV=1
Length = 238
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 97/152 (63%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR+LGYS ++++DVV+ V+ Y FVPWC++S+++ G LEIGF ++E
Sbjct: 76 KEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKR-SGYCKTRLEIGFPPVLE 134
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL IW F+PG P P TC L F + F+F S L+
Sbjct: 135 RYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 194
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A++FF EVV ++V +F R +YGPE I
Sbjct: 195 QLATLFFDEVVKQMVAAFERRACKLYGPETNI 226
>sp|Q3THF9|CQ10B_MOUSE Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Mus
musculus GN=Coq10b PE=2 SV=1
Length = 240
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 97/152 (63%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR+LGYS ++++DVV+ ++ Y FVPWC++S+I+ G LE+GF ++E
Sbjct: 78 KEYSERRILGYSMQEMYDVVSGMEDYQHFVPWCKKSDIISRR-SGYCKTRLEVGFPPVLE 136
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL IW F+PG P P TC L F + F+F S L+
Sbjct: 137 RYTSIVTLVKPHLVKASCTDGKLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 196
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A++FF EVV ++V +F R +YGPE I
Sbjct: 197 QLATLFFDEVVKQMVAAFERRACKLYGPETNI 228
>sp|Q6PBN4|CQ10X_DANRE Coenzyme Q-binding protein COQ10 homolog, mitochondrial OS=Danio
rerio GN=zgc:73324 PE=2 SV=2
Length = 233
Score = 138 bits (347), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
Y E R + YSPEQ++DVVA V+ Y FVPWC++S++ + +G A+LEIGF +VE Y
Sbjct: 78 YSESRSINYSPEQMYDVVANVEQYQQFVPWCKKSKVTR-GRNGDMRAQLEIGFPPIVERY 136
Query: 160 VSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAAS 219
S V + V+ +D SLF+HL +W F PG + +CN+ F V F+F S L+ Q A+
Sbjct: 137 TSEVTVIPNHQVRAVCTDGSLFNHLETLWRFTPGAAGQSCNVEFFVTFEFKSLLHSQLAT 196
Query: 220 MFFKEVVSRLVGSFSERCRLIYG 242
MFF EVV ++V +F R + +YG
Sbjct: 197 MFFDEVVKQMVNAFETRAKKLYG 219
>sp|Q5I0I9|CQ10B_RAT Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Rattus
norvegicus GN=Coq10b PE=2 SV=2
Length = 240
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 96/152 (63%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS ++++DVV+ ++ Y FVPWC++S+IL G LEIGF ++E
Sbjct: 78 KEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDILSRR-SGYCKTRLEIGFPPVLE 136
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPS--PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL +W F+PG P TC L F + F+F S L+
Sbjct: 137 RYTSIVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 196
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A++FF EVV ++V +F R +YGPE I
Sbjct: 197 QLATLFFDEVVKQMVAAFERRACKLYGPETNI 228
>sp|Q567E6|CQ10B_DANRE Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Danio
rerio GN=coq10b PE=2 SV=1
Length = 238
Score = 135 bits (339), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/152 (44%), Positives = 98/152 (64%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS +++++VVA V+ Y FVPWC++S+++ G A+L +GF +VE
Sbjct: 76 KEYSERRIIGYSMQEMYEVVAKVEDYLLFVPWCKKSDVIFRR-SGFCKAKLTVGFPPVVE 134
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
+Y S V RP VK + SD LF+HL +W F+PG P P TC L F + F+F S L+
Sbjct: 135 NYTSLVSTVRPHLVKASCSDGKLFNHLETVWRFSPGLPGYPRTCTLDFAISFEFRSLLHS 194
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A++FF EVV ++V +F R +YGPE I
Sbjct: 195 QLATVFFDEVVKQMVSAFERRASKLYGPETQI 226
>sp|Q96MF6|CQ10A_HUMAN Coenzyme Q-binding protein COQ10 homolog A, mitochondrial OS=Homo
sapiens GN=COQ10A PE=2 SV=2
Length = 247
Score = 134 bits (337), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS +++++VV+ V Y FVPWC++S ++ G A+LE+GF ++E
Sbjct: 85 KAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSR-KGHLKAQLEVGFPPVME 143
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V + +P VK +D LF+HL IW F+PG P+ P TC + F + F+F S L+
Sbjct: 144 RYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHS 203
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYGPEAPI 247
Q A+MFF EVV + V +F R +GPE I
Sbjct: 204 QLATMFFDEVVKQNVAAFERRAATKFGPETAI 235
>sp|Q6GNP0|CQ10B_XENLA Coenzyme Q-binding protein COQ10 homolog B, mitochondrial
OS=Xenopus laevis GN=coq10b PE=2 SV=1
Length = 244
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 92/151 (60%), Gaps = 4/151 (2%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
Y E +VLG+S EQ++D+VA V Y FVPWC RS++L G AELE+GF +VE Y
Sbjct: 85 YSESKVLGFSIEQMYDIVADVQNYKIFVPWCNRSKVLSCK-KGVTRAELEVGFPPVVERY 143
Query: 160 VSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPS--PGTCNLYFLVDFKFHSPLYRQA 217
VS + + V+ D LF+HL +W F+PG S P TC L F V F+F S L+
Sbjct: 144 VSEISVIPLHQVRAVCCDGKLFNHLETVWRFSPGLSGRPDTCTLDFCVSFEFKSLLHSHL 203
Query: 218 ASMFFKEVVSRLVGSFSERCRLIYG-PEAPI 247
AS+FF EVV ++V +F ++ IYG E P+
Sbjct: 204 ASVFFDEVVKQMVCAFEKQAGRIYGRQEVPL 234
>sp|Q556V1|COQ10_DICDI Coenzyme Q-binding protein COQ10, mitochondrial OS=Dictyostelium
discoideum GN=coq10-1 PE=3 SV=1
Length = 205
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 12/187 (6%)
Query: 66 SSLANFCQNN---GNVLQRRRFLGVGDGEEG------DVLSKVYEERRVLGYSPEQLFDV 116
S L + C NN G+ + G D + +++K E + L Y Q++ V
Sbjct: 14 SILKSGCNNNIGYGDRYFFNKLFGSNDASDTHNQPTTKIVTK--EMTKELKYPVNQVYSV 71
Query: 117 VAAVDLYHGFVPWCQRSEILKHNPDGS-FDAELEIGFKFLVESYVSHVELNRPKFVKTTA 175
+ V+ Y F+P+C S ILK D + F+AELE+G + ESYVS V KF+++TA
Sbjct: 72 IIKVEDYKEFLPFCLNSTILKREKDKNHFEAELEVGQGTIKESYVSKVVYKENKFIESTA 131
Query: 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSE 235
+D+ LF LIN W F G +P T + + ++F SP Y FF + ++ SF +
Sbjct: 132 TDTPLFHKLINTWSFKQGQTPNTTIAHCKLIYQFKSPFYATLMENFFASSLDVMINSFDK 191
Query: 236 RCRLIYG 242
RC +YG
Sbjct: 192 RCDELYG 198
>sp|Q8MLL3|COQ10_DROME Coenzyme Q-binding protein COQ10, mitochondrial OS=Drosophila
melanogaster GN=Coq10 PE=2 SV=1
Length = 242
Score = 102 bits (253), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
Y ++ ++GYS + ++ VV+ V YH FVP+ +RS++ +G F A+L +GF L E+Y
Sbjct: 85 YTKKELVGYSMQDMYSVVSDVSNYHKFVPYVKRSDVHSRGSEG-FKADLIVGFPPLNEAY 143
Query: 160 VSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPS--PGTCNLYFLVDFKFHSPLYRQA 217
S V L P VK+ D LF++L+N W F PG P +C L F V F+F S L+
Sbjct: 144 TSQVTLVPPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSCVLDFKVSFEFKSLLHSNV 203
Query: 218 ASMFFKEVVSRLVGSFSERCRLIYGPEA 245
A++FF + ++ +F + R GP +
Sbjct: 204 ANIFFDLICDQMENAFIQEVRRRSGPPS 231
>sp|Q08058|COQ10_YEAST Coenzyme Q-binding protein COQ10, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ10 PE=1
SV=1
Length = 207
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 7/163 (4%)
Query: 81 RRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNP 140
+R F G+ G + + Y R+ + P ++ V+ V Y F+P+C S + K NP
Sbjct: 28 KRNFFGLS-GTNHTIREQRYVLRKAINAPPSTVYAAVSEVAQYKEFIPYCVDSFVDKRNP 86
Query: 141 --DGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDS---SLFDHLINIWEFNPGPS 195
+ A L +GFK E ++ +V T +++ +LF LI+ W P P+
Sbjct: 87 VDNKPLIAGLRVGFKQYDEEFICNVTCKDTDHTYTVVAETISHNLFHLLISKWTIMPHPN 146
Query: 196 -PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237
P + L+ FKF S +Y + +F K V ++ +F++R
Sbjct: 147 RPNAAMVELLLRFKFKSRIYNSVSLIFAKTVTELVMNAFAKRA 189
>sp|Q9USM9|COQ10_SCHPO Coenzyme Q-binding protein coq10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coq10 PE=3 SV=1
Length = 164
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 75/151 (49%), Gaps = 4/151 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSF--DAELEIGFKFL 155
+ Y R++ Y P LF +++ V+ Y FVP+CQ+S++ +++P + A+L +GFK L
Sbjct: 11 ECYRASRLMPYKPSFLFSLISNVNEYERFVPFCQKSKVTEYDPKTGYPTKADLTVGFKGL 70
Query: 156 VESYVSHVELNRPKF-VKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLY 214
E++ S V + V AS LF L W S G + VDF+F S L+
Sbjct: 71 CETFDSKVVCDPVALTVLADASHHRLFRRLKTHWSIEEA-SRGRVRVDLEVDFEFASKLH 129
Query: 215 RQAASMFFKEVVSRLVGSFSERCRLIYGPEA 245
+ V S ++ F ++ ++ + E+
Sbjct: 130 GMMSKFVGSSVASEIIQGFVQQAKIKHKLES 160
>sp|Q9ZDZ7|RATA_RICPR Ribosome association toxin RatA OS=Rickettsia prowazekii (strain
Madrid E) GN=ratA PE=3 SV=1
Length = 146
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
++ ++L Y P++LFD+V + Y F+PWC + I+ N + +EL I K L E Y
Sbjct: 4 FQHTKILPYKPKKLFDLVWDIKSYPQFLPWCAAARIISEN-NQEVISELVIQLKGLSEKY 62
Query: 160 VSHV---ELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQ 216
S V + ++ T + S F++L + W+F P S GT L F ++FK S + +
Sbjct: 63 NSRVINTITDNGIYLIDTVAISGPFEYLKSTWQFIPH-STGT-ELKFFINFKMTSVILDK 120
Query: 217 AASMFFKEVVSRLVGSFSERCR 238
+F +++ +F +R +
Sbjct: 121 LIGSYFTIATEKMILAFEKRAK 142
>sp|Q8FEY4|PAST_ECOL6 Persistence and stress-resistance toxin PasT OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pasT PE=1
SV=1
Length = 158
Score = 64.3 bits (155), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Query: 108 YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
YS EQ++ +V V Y F+P C S IL+ P G A +++ + +++ + +L
Sbjct: 25 YSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP-GQMTAAVDVSKAGISKTFTTRNQLTS 83
Query: 168 PKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVS 227
+ + + D F LI W+F P S C + F +DF+F + L A FKE+ +
Sbjct: 84 NQSILMSLVDGP-FKKLIGGWKFTP-LSQDACRIEFHLDFEFTNKLIELAFGRVFKELAA 141
Query: 228 RLVGSFSERCRLIY 241
+V +F+ R + +Y
Sbjct: 142 NMVQAFTVRAKEVY 155
>sp|Q75CC1|COQ10_ASHGO Coenzyme Q-binding protein COQ10, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COQ10 PE=3 SV=1
Length = 204
Score = 64.3 bits (155), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 10/167 (5%)
Query: 77 NVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEIL 136
+ + RR FLG G D + Y +RV ++ V+ V LY F+P+C S +
Sbjct: 22 SCVSRRTFLGFTGG---DTKEQRYILKRVFNAPLHYVYPAVSEVSLYKLFIPYCTDSFVN 78
Query: 137 KHNPDGSFDAE--LEIGFKFLVESYVSHVELNR-PKFVKTTASDS---SLFDHLINIWEF 190
K P + E L +GF+ E++V V+ P ++ ++S LF+ L W
Sbjct: 79 KRRPGDNMPTEAGLRVGFQQYDETFVCRVDCTTLPGNQRSVVAESLAHHLFETLHTQWLL 138
Query: 191 NPGPS-PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSER 236
+P P+ P + ++ FKF S LY +S+F V ++ +F +R
Sbjct: 139 SPHPTRPDASVVELILRFKFKSQLYNSVSSIFGTRVTQVVMKAFEKR 185
>sp|P0AGL6|RATA_SHIFL Ribosome association toxin RatA OS=Shigella flexneri GN=ratA PE=3
SV=1
Length = 158
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 108 YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
YS EQ++ +V V Y F+P C S IL+ P G A +++ + +++ + +L
Sbjct: 25 YSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP-GQMTAAVDVSKAGISKTFTTRNQLTS 83
Query: 168 PKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVS 227
+ + D F LI W+F P S C + F +DF+F + L A FKE+ +
Sbjct: 84 NQSILMNLVDGP-FKKLIGGWKFTP-LSQEACRIEFHLDFEFTNKLIELAFGRVFKELAA 141
Query: 228 RLVGSFSERCRLIY 241
+V +F+ R + +Y
Sbjct: 142 NMVQAFTVRAKEVY 155
>sp|P0AGL5|RATA_ECOLI Ribosome association toxin RatA OS=Escherichia coli (strain K12)
GN=ratA PE=1 SV=1
Length = 158
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 108 YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
YS EQ++ +V V Y F+P C S IL+ P G A +++ + +++ + +L
Sbjct: 25 YSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP-GQMTAAVDVSKAGISKTFTTRNQLTS 83
Query: 168 PKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVS 227
+ + D F LI W+F P S C + F +DF+F + L A FKE+ +
Sbjct: 84 NQSILMNLVDGP-FKKLIGGWKFTP-LSQEACRIEFHLDFEFTNKLIELAFGRVFKELAA 141
Query: 228 RLVGSFSERCRLIY 241
+V +F+ R + +Y
Sbjct: 142 NMVQAFTVRAKEVY 155
>sp|O68560|RATA_PSEAE Ribosome association toxin RatA OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ratA
PE=3 SV=1
Length = 144
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 3/147 (2%)
Query: 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFL 155
+S + +L Y LFD+V V Y F+PWC S++L+ + + AEL + L
Sbjct: 1 MSTHIQRSALLPYPARALFDLVNDVKRYPEFLPWCSASQVLEES-ESLMRAELTVAKGSL 59
Query: 156 VESYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYR 215
+ + + L ++ + F L +W+F C + + F + PL +
Sbjct: 60 SQRFTTRNVLVPGASIEMNLENGP-FTELHGVWQFK-ALGEKACKITLDLTFDYAGPLVK 117
Query: 216 QAASMFFKEVVSRLVGSFSERCRLIYG 242
F + + +V +F +R + +YG
Sbjct: 118 ATLGPLFTQAANTMVDAFCQRAKQLYG 144
>sp|P0C6Q0|RATA_VIBCH Ribosome association toxin RatA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ratA PE=3
SV=1
Length = 144
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 105 VLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVE 164
++ +S EQ+F +V V Y F+P C S +L+ + + A +++ + +++ + +
Sbjct: 9 LVSFSAEQMFHLVNDVARYPEFLPGCSGSCVLEQS-EAHMVASVDVSKAGISKTFTTSNQ 67
Query: 165 LNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKE 224
L + + D F L W F P C + ++F+F S + A F E
Sbjct: 68 LTPGVSIAMSLVDGP-FKTLRGGWFFTP-LDEAACKVELRLEFEFSSKMIELAFGKIFNE 125
Query: 225 VVSRLVGSFSERCRLIYG 242
+ S +V +F+ R + +YG
Sbjct: 126 LTSNMVNAFTRRAKQVYG 143
>sp|A5F376|RATA_VIBC3 Ribosome association toxin RatA OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=ratA PE=3 SV=2
Length = 144
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 105 VLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVE 164
++ +S EQ+F +V V Y F+P C S +L+ + + A +++ + +++ + +
Sbjct: 9 LVSFSAEQMFHLVNDVARYPEFLPGCSGSCVLEQS-EAHMVASVDVSKAGISKTFTTSNQ 67
Query: 165 LNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKE 224
L + + D F L W F P C + ++F+F S + A F E
Sbjct: 68 LTPGVSIAMSLVDGP-FKTLRGGWFFTP-LDEAACKVELRLEFEFSSKMIELAFGKIFNE 125
Query: 225 VVSRLVGSFSERCRLIYG 242
+ S +V +F+ R + +YG
Sbjct: 126 LTSNMVNAFTRRAKQVYG 143
>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1
SV=2
Length = 2085
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVES 158
+ ++R+ L QL D + + LY+ PW S + + SFD++LE K +ES
Sbjct: 862 INQQRKRL----NQLVDSLQQLRLYNHTAPWSLPSALSTQSNSHSFDSDLECLLKTTIES 917
Query: 159 YV 160
+
Sbjct: 918 HT 919
>sp|Q4R510|FXRD1_MACFA FAD-dependent oxidoreductase domain-containing protein 1 OS=Macaca
fascicularis GN=FOXRED1 PE=2 SV=1
Length = 486
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 132 RSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKF--VKTTASDSSLFDHLINIWE 189
RS + PD A LE+ F E H+ L P F +K + + +D+ N ++
Sbjct: 363 RSPAEEEEPD---PANLEVDHDFFQEKVWPHLALRVPAFETLKVQTAWAGYYDY--NTFD 417
Query: 190 FNP--GPSPGTCNLYFLVDFKFH 210
N GP P N+YF F H
Sbjct: 418 QNGVVGPHPLVVNMYFATGFSGH 440
>sp|Q55CE0|MKCF_DICDI Probable serine/threonine-protein kinase mkcF OS=Dictyostelium
discoideum GN=mkcF PE=3 SV=1
Length = 677
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 75 NGNVLQRRRFLG-VGDGEEGDVLSKVYEERRV----LGYS-PEQLFDVVAAVDLYHGFVP 128
+ ++ +R +F VG G+ G V +Y+++RV + YS P++ +V+ + GF+
Sbjct: 394 SSDIKKRIKFTHMVGRGQYGKVYDALYDKKRVCVKVVNYSTPKEQHNVLQEI----GFLT 449
Query: 129 WCQRSEILKHNPDGSFDAELEIGFKFL 155
C ILK+N + ++L I +F+
Sbjct: 450 QCDHPNILKYNCSVLYGSDLFIVSEFI 476
>sp|Q9GLP0|ITB1_PIG Integrin beta-1 OS=Sus scrofa GN=ITGB1 PE=2 SV=1
Length = 798
Score = 31.2 bits (69), Expect = 7.6, Method: Composition-based stats.
Identities = 46/212 (21%), Positives = 85/212 (40%), Gaps = 16/212 (7%)
Query: 36 MLNQFRRLCGITGIETSS-VHKLIGAHQNIS-SSLANFC---QNNGNVLQRRRFLGVGDG 90
++N+ RR+ I S V K + + + + + L N C QN + + L + D
Sbjct: 169 LMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTSPFSYKNVLSLTD- 227
Query: 91 EEGDVLSKVYEERRVLGY--SPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAEL 148
+G+V +++ ++R+ G SPE FD + V + + W + +L + D F
Sbjct: 228 -KGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSLIGWRNVTRLLVFSTDAGFHFAG 286
Query: 149 EIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFK 208
+ +V H L + + D HL+ S F V +
Sbjct: 287 DGKLGGIVLPNDGHCHLENDVYTMSHYYDYPSIAHLVQKL------SENNIQTIFAVTEE 340
Query: 209 FHSPLYRQAASMFFKEVVSRLVGSFSERCRLI 240
F P+Y++ ++ K V L + S +LI
Sbjct: 341 FQ-PVYKELKNLIPKSAVGTLSANSSNVIQLI 371
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,798,348
Number of Sequences: 539616
Number of extensions: 3940538
Number of successful extensions: 8797
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8749
Number of HSP's gapped (non-prelim): 29
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)