Query 025224
Match_columns 256
No_of_seqs 159 out of 830
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2867 Oligoketide cyclase/li 100.0 1.2E-42 2.7E-47 288.3 15.3 144 97-243 1-145 (146)
2 KOG3177 Oligoketide cyclase/li 100.0 2E-41 4.4E-46 294.3 11.4 210 37-256 17-227 (227)
3 PRK10724 hypothetical protein; 100.0 5.5E-39 1.2E-43 271.7 20.1 146 95-243 12-157 (158)
4 cd07813 COQ10p_like Coenzyme Q 100.0 5.1E-29 1.1E-33 201.7 18.0 138 100-240 1-138 (138)
5 cd08860 TcmN_ARO-CYC_like N-te 99.9 3.6E-25 7.7E-30 184.5 18.3 138 99-239 2-144 (146)
6 PF03364 Polyketide_cyc: Polyk 99.9 1.6E-23 3.5E-28 167.0 14.1 127 106-234 1-130 (130)
7 cd08866 SRPBCC_11 Ligand-bindi 99.9 1.4E-21 2.9E-26 158.2 17.8 136 101-239 2-144 (144)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.9 4.5E-21 9.8E-26 154.8 17.6 138 100-239 1-142 (142)
9 cd07819 SRPBCC_2 Ligand-bindin 99.9 8.8E-21 1.9E-25 151.3 18.1 138 98-237 2-140 (140)
10 cd07817 SRPBCC_8 Ligand-bindin 99.8 3.5E-17 7.6E-22 130.6 15.7 132 100-239 2-135 (139)
11 cd05018 CoxG Carbon monoxide d 99.7 1E-16 2.3E-21 128.3 16.9 136 99-240 2-142 (144)
12 cd07818 SRPBCC_1 Ligand-bindin 99.7 4.7E-16 1E-20 126.8 16.7 138 99-239 3-150 (150)
13 cd08876 START_1 Uncharacterize 99.7 3.3E-16 7.1E-21 134.1 16.5 141 97-238 40-195 (195)
14 cd07824 SRPBCC_6 Ligand-bindin 99.7 5.6E-16 1.2E-20 127.1 16.5 136 99-239 2-144 (146)
15 cd08865 SRPBCC_10 Ligand-bindi 99.7 5.3E-15 1.1E-19 116.9 17.4 136 100-239 1-140 (140)
16 cd07821 PYR_PYL_RCAR_like Pyra 99.6 1.7E-14 3.8E-19 114.1 16.7 135 99-238 2-140 (140)
17 PF10604 Polyketide_cyc2: Poly 99.6 1.3E-12 2.8E-17 103.5 20.9 135 97-238 1-139 (139)
18 cd07820 SRPBCC_3 Ligand-bindin 99.5 1.8E-12 3.9E-17 105.2 16.3 128 100-233 1-132 (137)
19 cd07823 SRPBCC_5 Ligand-bindin 99.5 1.6E-12 3.5E-17 106.6 15.7 133 101-238 2-145 (146)
20 cd08862 SRPBCC_Smu440-like Lig 99.5 5.4E-12 1.2E-16 100.4 17.9 134 99-238 2-137 (138)
21 cd07812 SRPBCC START/RHO_alpha 99.5 7.3E-12 1.6E-16 95.8 16.1 134 101-236 2-140 (141)
22 cd07822 SRPBCC_4 Ligand-bindin 99.4 3.1E-11 6.6E-16 95.6 17.5 137 99-238 1-141 (141)
23 cd07814 SRPBCC_CalC_Aha1-like 99.3 3E-10 6.6E-15 90.2 15.6 135 100-239 2-139 (139)
24 COG5637 Predicted integral mem 99.1 7.8E-10 1.7E-14 95.6 12.7 136 97-239 69-206 (217)
25 cd08877 START_2 Uncharacterize 99.1 2.4E-09 5.3E-14 93.9 14.0 142 97-239 45-214 (215)
26 PF06240 COXG: Carbon monoxide 99.0 2.1E-08 4.5E-13 82.5 16.9 132 103-240 2-138 (140)
27 cd07825 SRPBCC_7 Ligand-bindin 99.0 8.5E-09 1.8E-13 83.1 14.1 135 99-237 1-143 (144)
28 cd08906 START_STARD3-like Chol 99.0 2.5E-08 5.3E-13 88.0 15.3 141 98-239 49-208 (209)
29 cd08905 START_STARD1-like Chol 98.9 3.3E-08 7.1E-13 87.0 13.4 142 98-239 49-208 (209)
30 cd08868 START_STARD1_3_like Ch 98.8 2.6E-07 5.6E-12 80.7 15.5 142 98-240 48-208 (208)
31 cd08911 START_STARD7-like Lipi 98.8 4.1E-07 8.8E-12 79.9 16.8 143 97-239 44-206 (207)
32 cd08870 START_STARD2_7-like Li 98.8 4.7E-07 1E-11 79.4 17.0 142 97-238 49-207 (209)
33 cd08871 START_STARD10-like Lip 98.7 7E-07 1.5E-11 78.7 16.7 144 96-240 45-203 (222)
34 cd08874 START_STARD9-like C-te 98.7 3.3E-07 7.3E-12 80.9 14.0 130 98-228 45-195 (205)
35 cd08903 START_STARD5-like Lipi 98.7 9.5E-07 2.1E-11 77.7 15.9 140 99-239 47-207 (208)
36 smart00234 START in StAR and p 98.6 5.2E-06 1.1E-10 71.4 17.7 143 96-239 43-202 (206)
37 cd07816 Bet_v1-like Ligand-bin 98.6 8.7E-06 1.9E-10 67.7 18.0 112 99-212 2-122 (148)
38 cd00177 START Lipid-binding ST 98.6 6.1E-06 1.3E-10 68.9 16.7 138 96-234 37-189 (193)
39 cd08910 START_STARD2-like Lipi 98.5 2.9E-06 6.2E-11 74.7 13.9 140 96-238 47-205 (207)
40 COG3427 Carbon monoxide dehydr 98.5 1.3E-05 2.9E-10 67.4 17.2 134 99-239 2-141 (146)
41 cd08913 START_STARD14-like Lip 98.5 2.1E-06 4.6E-11 77.6 13.2 126 97-225 80-224 (240)
42 cd08869 START_RhoGAP C-termina 98.5 7.3E-06 1.6E-10 71.4 15.4 136 95-234 41-191 (197)
43 cd08873 START_STARD14_15-like 98.5 4E-06 8.7E-11 75.7 14.0 116 96-212 75-207 (235)
44 cd08872 START_STARD11-like Cer 98.4 9.9E-06 2.2E-10 72.9 15.4 145 96-242 50-229 (235)
45 cd08908 START_STARD12-like C-t 98.4 9.8E-06 2.1E-10 71.7 14.5 133 95-230 49-195 (204)
46 cd08893 SRPBCC_CalC_Aha1-like_ 98.4 1.1E-05 2.3E-10 64.0 13.0 128 100-238 2-135 (136)
47 cd08867 START_STARD4_5_6-like 98.4 2.2E-05 4.7E-10 68.5 16.0 140 98-237 46-205 (206)
48 cd08914 START_STARD15-like Lip 98.3 9.4E-06 2E-10 73.3 11.2 118 97-218 77-213 (236)
49 PF01852 START: START domain; 98.3 0.00026 5.5E-09 60.6 19.5 141 96-239 44-202 (206)
50 cd08898 SRPBCC_CalC_Aha1-like_ 98.3 7.7E-05 1.7E-09 59.8 15.3 131 99-238 2-144 (145)
51 cd08899 SRPBCC_CalC_Aha1-like_ 98.2 2.6E-05 5.6E-10 65.0 12.3 126 98-239 11-137 (157)
52 cd08894 SRPBCC_CalC_Aha1-like_ 98.1 0.00035 7.5E-09 56.7 16.9 131 100-237 2-137 (139)
53 cd08896 SRPBCC_CalC_Aha1-like_ 98.0 0.001 2.3E-08 54.3 17.5 134 100-237 2-144 (146)
54 cd08895 SRPBCC_CalC_Aha1-like_ 97.8 0.0028 6E-08 51.8 16.8 131 100-237 2-144 (146)
55 cd08900 SRPBCC_CalC_Aha1-like_ 97.7 0.007 1.5E-07 49.2 16.8 104 100-207 2-114 (143)
56 cd07826 SRPBCC_CalC_Aha1-like_ 97.6 0.016 3.4E-07 47.3 18.1 132 100-236 2-139 (142)
57 cd08909 START_STARD13-like C-t 97.6 0.0054 1.2E-07 54.4 16.1 131 95-228 49-194 (205)
58 PF08327 AHSA1: Activator of H 97.5 0.007 1.5E-07 47.0 14.4 94 107-207 1-97 (124)
59 cd08891 SRPBCC_CalC Ligand-bin 97.4 0.01 2.2E-07 48.6 14.6 102 100-207 2-115 (149)
60 cd08897 SRPBCC_CalC_Aha1-like_ 97.3 0.013 2.7E-07 47.1 14.3 98 100-205 2-105 (133)
61 cd08904 START_STARD6-like Lipi 97.2 0.026 5.5E-07 50.0 15.8 135 98-233 46-199 (204)
62 cd08901 SRPBCC_CalC_Aha1-like_ 97.0 0.018 4E-07 46.5 12.4 98 100-206 2-99 (136)
63 PF00407 Bet_v_1: Pathogenesis 97.0 0.13 2.8E-06 43.2 17.2 133 98-236 4-147 (151)
64 cd08902 START_STARD4-like Lipi 96.6 0.075 1.6E-06 47.2 13.7 139 98-237 47-201 (202)
65 PF10698 DUF2505: Protein of u 96.3 0.36 7.8E-06 40.6 15.3 129 100-231 1-149 (159)
66 cd08892 SRPBCC_Aha1 Putative h 96.0 0.23 4.9E-06 39.7 12.5 97 100-208 2-100 (126)
67 COG3832 Uncharacterized conser 96.0 0.47 1E-05 39.4 14.4 135 97-236 7-146 (149)
68 COG4276 Uncharacterized conser 94.7 1.5 3.2E-05 37.0 13.1 125 97-229 1-138 (153)
69 PTZ00220 Activator of HSP-90 A 94.5 0.44 9.5E-06 38.7 9.6 92 106-207 1-95 (132)
70 cd08875 START_ArGLABRA2_like C 93.8 2.9 6.2E-05 37.9 14.2 138 99-237 61-228 (229)
71 PF08982 DUF1857: Domain of un 93.0 5 0.00011 33.9 14.0 118 107-237 17-145 (149)
72 cd08864 SRPBCC_DUF3074 DUF3074 92.1 2.3 5E-05 37.7 11.0 111 125-235 67-204 (208)
73 KOG2761 START domain-containin 90.3 13 0.00029 33.5 14.7 139 97-235 52-210 (219)
74 cd08863 SRPBCC_DUF1857 DUF1857 89.7 11 0.00025 31.6 15.6 65 108-177 17-82 (141)
75 PF11687 DUF3284: Domain of un 88.7 11 0.00024 30.3 13.5 105 102-222 3-118 (120)
76 cd08907 START_STARD8-like C-te 88.0 19 0.00041 32.1 14.3 133 95-232 49-197 (205)
77 PLN00188 enhanced disease resi 80.7 36 0.00079 35.7 13.2 119 98-216 227-367 (719)
78 cd07817 SRPBCC_8 Ligand-bindin 45.6 40 0.00087 26.0 4.4 31 208-238 108-138 (139)
79 PLN00095 chlorophyllide a oxyg 31.3 4.9E+02 0.011 25.7 10.1 128 103-231 222-363 (394)
80 PF02974 Inh: Protease inhibit 26.6 81 0.0018 24.5 3.3 26 181-208 9-34 (99)
81 PF12139 APS-reductase_C: Aden 20.8 2.9E+02 0.0062 21.3 5.1 48 120-171 1-49 (83)
No 1
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=100.00 E-value=1.2e-42 Score=288.25 Aligned_cols=144 Identities=33% Similarity=0.630 Sum_probs=138.2
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCC-eEEEEe
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPK-FVKTTA 175 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~-rI~~~~ 175 (256)
|+.++.+++|||+|+|||+||+||++||+|+|||.+++|+++++.+ +.|+++|+++++.++|+|+|+++++. .|.+..
T Consensus 1 m~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~~-l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~l 79 (146)
T COG2867 1 MPQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNERE-LIAELDVGFKGIRETFTTRVTLKPTARSIDMKL 79 (146)
T ss_pred CCeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcce-eEEEEEEEhhheeeeeeeeeeecCchhhhhhhh
Confidence 7899999999999999999999999999999999999999999864 89999999999999999999999988 888888
Q ss_pred cCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025224 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLIYGP 243 (256)
Q Consensus 176 ~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~lyg~ 243 (256)
.+ |||+.|.|.|+|.|+ ++++|+|+|.|||||+|+|++.+++++|+.++++|++||++||+++||-
T Consensus 80 ~~-GPFk~L~~~W~F~pl-~~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF~kRA~~~y~~ 145 (146)
T COG2867 80 ID-GPFKYLKGGWQFTPL-SEDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAFEKRAKEVYGL 145 (146)
T ss_pred hc-CChhhhcCceEEEEC-CCCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 76 999999999999998 4789999999999999999999999999999999999999999999984
No 2
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=100.00 E-value=2e-41 Score=294.30 Aligned_cols=210 Identities=40% Similarity=0.725 Sum_probs=182.7
Q ss_pred ccceeeeccccccccccccccccccccccccccccccCCCcceecceeccCCCCCCCcccccEEEEEEEEcCCHHHHHHH
Q 025224 37 LNQFRRLCGITGIETSSVHKLIGAHQNISSSLANFCQNNGNVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDV 116 (256)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~~~~~~~~~~~~m~~~~~s~~V~a~~eqVfdL 116 (256)
-+++|.+..+.|...+...+++ ....+...+. ...++|+||++.+.. ...-+.|+++++++|+|++||++
T Consensus 17 t~~~~~~~~~~g~r~l~s~~~~-~~~~~~~~~~-------~~p~~R~f~~~~~~~--~~r~k~Y~errligysp~~my~v 86 (227)
T KOG3177|consen 17 TIRIRLAPLSRGSRTLISCRLL-MQRPAQVSTP-------GLPLRRSFFGFSAPF--TNREKAYSERRLIGYSPSEMYSV 86 (227)
T ss_pred hhhhhhhhcccchhhhhhhhhh-ccCcccccCC-------CcchhhheeeecCCc--chHHHHHHHHhhhCCCHHHHHHH
Confidence 4455555444455555555555 5556655552 233899999998743 34667899999999999999999
Q ss_pred HHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecCCccccceeeEEEEeeCC-C
Q 025224 117 VAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGP-S 195 (256)
Q Consensus 117 VaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~~GpFk~L~G~W~f~p~~-~ 195 (256)
|+||+.|.+|+|||++|.|+++++++.+.|+|+|||+++.|+|+|.|++++|+.+.....++++|.+|.+.|+|+|.+ -
T Consensus 87 VS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~E~y~S~Vt~~~p~l~kt~~~d~rLF~~L~t~Wsf~pg~~~ 166 (227)
T KOG3177|consen 87 VSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLDERYTSNVTCVKPHLTKTVCADGRLFNHLITIWSFKPGPNI 166 (227)
T ss_pred HHhHHHhhccccceeccceeecCCCCCceeeEEecCcccchhheeeeEEecccceEEeeccccHHHhhhheeeeccCCCC
Confidence 999999999999999999999998788999999999999999999999999998888888889999999999999985 2
Q ss_pred CCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccccccccC
Q 025224 196 PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLIYGPEAPILENTYEQRV 256 (256)
Q Consensus 196 ~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~lyg~~~~~~~~~~~~~~ 256 (256)
+++|.|+|.++|||+++||++++..||++++++|++||++||+.+|||+..+..+.||+++
T Consensus 167 p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF~~ra~~~~gp~~~i~~~~~~~~~ 227 (227)
T KOG3177|consen 167 PRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAFEQRARKLYGPESLIPRELLESER 227 (227)
T ss_pred CCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccccCchhhhccCC
Confidence 6899999999999999999999999999999999999999999999999999999999864
No 3
>PRK10724 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-39 Score=271.66 Aligned_cols=146 Identities=25% Similarity=0.513 Sum_probs=139.2
Q ss_pred ccccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEE
Q 025224 95 VLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTT 174 (256)
Q Consensus 95 ~~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~ 174 (256)
..|+.++.+++|+||+++||+||+|||+||+|+|||++++|+++++++ ..|+++|+++|+.++|+++++++++++|.+.
T Consensus 12 ~~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~~-~~a~l~v~~~g~~~~f~srv~~~~~~~I~~~ 90 (158)
T PRK10724 12 IVMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPGQ-MTAAVDVSKAGISKTFTTRNQLTSNQSILMQ 90 (158)
T ss_pred CcCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCCE-EEEEEEEeeCCccEEEEEEEEecCCCEEEEE
Confidence 359999999999999999999999999999999999999999998865 7899999999999999999999999999998
Q ss_pred ecCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025224 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLIYGP 243 (256)
Q Consensus 175 ~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~lyg~ 243 (256)
+.+ |||++|+|.|+|+|.+ +++|+|+|+++|+|++|+++.++++++++++++|++||++||+++||-
T Consensus 91 ~~~-GpF~~l~g~W~f~p~~-~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF~~Ra~~~yg~ 157 (158)
T PRK10724 91 LVD-GPFKKLIGGWKFTPLS-QEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSA 157 (158)
T ss_pred ecC-CChhhccceEEEEECC-CCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 876 8999999999999985 578999999999999999999999999999999999999999999984
No 4
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.97 E-value=5.1e-29 Score=201.69 Aligned_cols=138 Identities=36% Similarity=0.731 Sum_probs=129.3
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecCCc
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSS 179 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~~G 179 (256)
++.+..|++|+++||++++|+++||+|+|+|++++|+++.++ ...+++++++.++..+|+++++++++++|.+.+.+ |
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g 78 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDED-ELEAELTVGFGGIRESFTSRVTLVPPESIEAELVD-G 78 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCC-EEEEEEEEeeccccEEEEEEEEecCCCEEEEEecC-C
Confidence 367899999999999999999999999999999999999875 46889999999999999999999998899999876 8
Q ss_pred cccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 180 LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLI 240 (256)
Q Consensus 180 pFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~l 240 (256)
+|+.++|.|+|+|.+ +++|+|+|.++|++++|+++.+++++++++..+|+++|++||+++
T Consensus 79 ~~~~~~g~w~~~p~~-~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f~~~~~~~ 138 (138)
T cd07813 79 PFKHLEGEWRFKPLG-ENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAFEKRAKQL 138 (138)
T ss_pred ChhhceeEEEEEECC-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999994 588999999999999999999999999999999999999999864
No 5
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.94 E-value=3.6e-25 Score=184.46 Aligned_cols=138 Identities=14% Similarity=0.230 Sum_probs=123.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEee--cCeEEEEEEEEEecCCC-eEEEEe
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF--KFLVESYVSHVELNRPK-FVKTTA 175 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~--~g~~e~ytSrv~~d~~~-rI~~~~ 175 (256)
+++++++|++||++||++|+||++||+|+|+|++++|+++++++ ..+++.+.+ +|+..+|+|+++++++. +|.+..
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~-~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~~~ 80 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDT-VRFRLTMHPDANGTVWSWVSERTLDPVNRTVRARR 80 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCe-EEEEEEEEeccCCEEEEEEEEEEecCCCcEEEEEE
Confidence 57899999999999999999999999999999999999998765 467786666 89999999999999877 588754
Q ss_pred cCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS--PLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 176 ~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~--pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
...+||..|.|.|+|+|.+ ++|+|+|.++|++++ |+.+.++....+......+++++++||+
T Consensus 81 ~~~~p~~~m~~~W~f~~~~--~gT~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lk~~aE~ 144 (146)
T cd08860 81 VETGPFAYMNIRWEYTEVP--EGTRMRWVQDFEMKPGAPVDDAAMTDRLNTNTRAQMARIKKKIEA 144 (146)
T ss_pred ecCCCcceeeeeEEEEECC--CCEEEEEEEEEEECCCCccchHHHHHHHhcccHHHHHHHHHHhhh
Confidence 4458999999999999984 469999999999997 8889999999999999999999999986
No 6
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.91 E-value=1.6e-23 Score=166.98 Aligned_cols=127 Identities=20% Similarity=0.376 Sum_probs=116.5
Q ss_pred EcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecCCcccccee
Q 025224 106 LGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLI 185 (256)
Q Consensus 106 V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~~GpFk~L~ 185 (256)
|+||+++||++++|+++||+|+|+|++++|++++++ .+.+++++...++...|+++++++++..|.+.+.. |+|+.++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 78 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQIS-GPFKSFE 78 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSE-TTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecC-CCchhcE
Confidence 789999999999999999999999999999999886 47889999999999999999999998888888854 9999999
Q ss_pred eEEEEeeCCC---CCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHH
Q 025224 186 NIWEFNPGPS---PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFS 234 (256)
Q Consensus 186 G~W~f~p~~~---~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~ 234 (256)
|.|+|.+.++ +..|+|+++++++++.|+++.+++++++.....++++|+
T Consensus 79 g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 79 GSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp EEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999852 346799999999999999999999999999999999996
No 7
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.89 E-value=1.4e-21 Score=158.17 Aligned_cols=136 Identities=15% Similarity=0.160 Sum_probs=110.5
Q ss_pred EEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecC----eEEEEEEEEEecC--CCeEEEE
Q 025224 101 EERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF----LVESYVSHVELNR--PKFVKTT 174 (256)
Q Consensus 101 ~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g----~~e~ytSrv~~d~--~~rI~~~ 174 (256)
+.+..|++||++||++|.|+++||+|+|+|++++++++.+++ ...++....+. +..+.+.+++..+ ++.|.+.
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~ 80 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNR-VVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE 80 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE
Confidence 568899999999999999999999999999999999886653 33444322222 2222232223223 5689998
Q ss_pred ecCCccccceeeEEEEeeCCCC-CeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 175 ASDSSLFDHLINIWEFNPGPSP-GTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 175 ~~~~GpFk~L~G~W~f~p~~~~-~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
..+ |+|++++|.|+|+|.+ + ++|+|+|+++++++.++++.+++.++......++++|+++|+.
T Consensus 81 ~~~-g~~~~~~g~w~~~~~~-~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~lr~~ae~ 144 (144)
T cd08866 81 MVE-GDFKRFEGSWRLEPLA-DGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLAIRAEAES 144 (144)
T ss_pred EcC-CchhceEEEEEEEECC-CCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 865 9999999999999984 4 5899999999999999999999999999999999999999974
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.88 E-value=4.5e-21 Score=154.76 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=117.7
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecC-CCeEEEEecC-
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR-PKFVKTTASD- 177 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~-~~rI~~~~~~- 177 (256)
++++++|++|+++||++++|+++||+|+|+ ..+++++..+++.....+.++..+...+|++..++++ +++|.|....
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEP 79 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeC
Confidence 367899999999999999999999999999 8888888765443333466777888888988888988 6689998753
Q ss_pred CccccceeeEEEEeeCCCCCeeEEEEEEEEEeCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS--PLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 178 ~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~--pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
.|+|+.++|.|+|+|.+ +++|+|+|.++|+++. |+.+.++..+.+..+..++++|+++|++
T Consensus 80 ~~~~~~~~g~w~~~~~~-~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 142 (142)
T cd08861 80 PPPVASMSGEWRFEPLG-GGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAALRAAAER 142 (142)
T ss_pred CCChhhheeEEEEEECC-CCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHHHHHHhhC
Confidence 48999999999999984 4789999999999998 5678888888888999999999999974
No 9
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.87 E-value=8.8e-21 Score=151.32 Aligned_cols=138 Identities=15% Similarity=0.171 Sum_probs=122.9
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCC-eEEEEEEEeecCeEEEEEEEEEecCCCeEEEEec
Q 025224 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDG-SFDAELEIGFKFLVESYVSHVELNRPKFVKTTAS 176 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg-~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~ 176 (256)
..++++..|++||++||++|+|+++||+|+|+|.++++++..+++ ...+++.++..++.+.|+++++++++.+|.|+..
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTLV 81 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEEe
Confidence 368999999999999999999999999999999999998765533 3456778888888889999999988778999987
Q ss_pred CCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 177 DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 177 ~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
+++++..+.|.|+|+|.+ ++|+|++.++++++.|+++.+++.+++.+...+++++++.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~t~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 140 (140)
T cd07819 82 EGEGNRSQEGSYTLTPKG--DGTRVTFDLTVELTVPLPGFLKRKAEPLVLDEALKGLKKRV 140 (140)
T ss_pred cccceeEEEEEEEEEECC--CCEEEEEEEEEEecCCCCHHHHHHhhhHHHHHHHHhHhhhC
Confidence 756689999999999983 58999999999999999999999999999999999998864
No 10
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.76 E-value=3.5e-17 Score=130.58 Aligned_cols=132 Identities=10% Similarity=0.065 Sum_probs=107.1
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-CeEEEEEEEEEe-cCCCeEEEEecC
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYVSHVEL-NRPKFVKTTASD 177 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~~e~ytSrv~~-d~~~rI~~~~~~ 177 (256)
++.++.|++|+++||++++|+++||+|.|+|.+++++... ..++.+... |....|+++++. +++++|.+....
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~ 76 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT-----RSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVE 76 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC-----ceEEEEecCCCCcEEEEEEEeccCCCCEEEEEECC
Confidence 6788999999999999999999999999999999988542 134555555 777889988754 566689998765
Q ss_pred CccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 178 ~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
|+| .+.+.|+|++.+ +++|+|+++++|++.+++.+.+++++++.+..+++++..++.++
T Consensus 77 -~~~-~~~~~~~f~~~~-~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~ 135 (139)
T cd07817 77 -GAD-PNAGSVRFRPAP-GRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLREDLRRFKQ 135 (139)
T ss_pred -CCC-CcceEEEEEECC-CCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHHHHHHHHHH
Confidence 777 889999999984 46899999999999999888777777777777777666666554
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.75 E-value=1e-16 Score=128.31 Aligned_cols=136 Identities=15% Similarity=0.240 Sum_probs=109.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEe---cCCCeEEEEe
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVEL---NRPKFVKTTA 175 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~---d~~~rI~~~~ 175 (256)
.++.++.+++||++||+++.|+++|++|+|+|.++++++. +.+.+.+.++++++..+|+.+.++ +++.++.+..
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP---NEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC---CeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEE
Confidence 5788999999999999999999999999999999888763 235677777777777777655544 4556777765
Q ss_pred cCC--ccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 SDS--SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLI 240 (256)
Q Consensus 176 ~~~--GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~l 240 (256)
... +.+..+.+.|+|.|. +++|+|++.++++++.+ ++.+.+.+++.++.+++++|.++.++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~-l~~l~~~~~~~~~~~~~~~~~~~l~~~ 142 (144)
T cd05018 79 EGKGGAGFVKGTARVTLEPD--GGGTRLTYTADAQVGGK-LAQLGSRLIDGAARKLINQFFENLASK 142 (144)
T ss_pred EEcCCCceEEEEEEEEEEec--CCcEEEEEEEEEEEccC-hhhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 422 347889999999998 37899999999999986 477788888888888888888777653
No 12
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.72 E-value=4.7e-16 Score=126.75 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=100.7
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeC---CC-C-eEEEEEEEeecCeEEEEEEEEEecCCCeEEE
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHN---PD-G-SFDAELEIGFKFLVESYVSHVELNRPKFVKT 173 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~---~d-g-~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~ 173 (256)
.++.++.|++|+++||++++|+++||+|.|||..+..++.. .+ + .....+...-+.....| ....++|+++|.+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~v~~~~p~~~i~~ 81 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM-EITESVPNERIEY 81 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE-EEEecCCCcEEEE
Confidence 57899999999999999999999999999999987766541 11 1 11223332221012223 3456678888888
Q ss_pred EecCCcccc-ceeeEEEEeeCCCCCeeEEEEEEEEEeCchhH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 174 TASDSSLFD-HLINIWEFNPGPSPGTCNLYFLVDFKFHSPLY----RQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 174 ~~~~~GpFk-~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl----~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
.....++++ .+.+.|+|+|. +++|+|++.+++++..+++ +.+++..+++..++.+++|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~--~~gT~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E~ 150 (150)
T cd07818 82 ELRFIKPFEATNDVEFTLEPV--GGGTKVTWGMSGELPFPLKLMYLFLDMDKMIGKDFEKGLANLKAVLEK 150 (150)
T ss_pred EEEecCCccccceEEEEEEEc--CCceEEEEEEEecCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhC
Confidence 886558886 89999999998 3689999999999997754 4555666666677777888887763
No 13
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.72 E-value=3.3e-16 Score=134.13 Aligned_cols=141 Identities=14% Similarity=0.214 Sum_probs=113.3
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecC-e-EEEEEEEEEec--C-CCe-
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSHVELN--R-PKF- 170 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g-~-~e~ytSrv~~d--~-~~r- 170 (256)
+..+..+.+|+++|++||+++.|++.||+|.|+|.+++|+++.+++...+.+.+.... + ...|+...... . ++.
T Consensus 40 ~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~~ 119 (195)
T cd08876 40 LKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGSV 119 (195)
T ss_pred eEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCEE
Confidence 5788999999999999999999999999999999999999998765555666666554 2 34455443332 2 343
Q ss_pred -EEEEecCCc-c-------ccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 171 -VKTTASDSS-L-------FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 171 -I~~~~~~~G-p-------Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
|.+...+.. | ++.+.|.|.|+|.+ +++|+|+|.+.++++++++..+++.+++....+++++|++||+
T Consensus 120 ~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~l~~~~~ 195 (195)
T cd08876 120 TITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLENLRKQLK 195 (195)
T ss_pred EEEeecCCccCCCCCCeEEceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334333221 3 77889999999994 6789999999999999999999999999999999999999984
No 14
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.71 E-value=5.6e-16 Score=127.12 Aligned_cols=136 Identities=13% Similarity=0.188 Sum_probs=104.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEE---EeecCeEEEEEEEEEe-cCCCeEEEE
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELE---IGFKFLVESYVSHVEL-NRPKFVKTT 174 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~---V~~~g~~e~ytSrv~~-d~~~rI~~~ 174 (256)
.+..+..|++|+++||++|+|+++||+|+|+|+++++++..++....+++. .+..+...+++.+++- ++++++.+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~ 81 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVR 81 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEE
Confidence 356778899999999999999999999999999999998522222334443 2344666777777644 677788887
Q ss_pred ecCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP---LYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 175 ~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p---Ll~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
. . |+|+. .+.|+|++. +++|+|++++++++++| ++..+++++++.+..+|++...+-.++
T Consensus 82 ~-~-g~~~~-~~~~~~~~~--~~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~ 144 (146)
T cd07824 82 A-S-GDLEG-VGRWTLAPD--GSGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLAR 144 (146)
T ss_pred E-E-EeeeE-EEEEEEEEc--CCCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHh
Confidence 4 4 77775 799999997 36799999999999998 677777888888777777766655443
No 15
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.68 E-value=5.3e-15 Score=116.88 Aligned_cols=136 Identities=14% Similarity=0.115 Sum_probs=106.8
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCC-eEEEEEEEeecCeEEEEEEEEEe-cCCCeEEEEecC
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDG-SFDAELEIGFKFLVESYVSHVEL-NRPKFVKTTASD 177 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg-~~~Ael~V~~~g~~e~ytSrv~~-d~~~rI~~~~~~ 177 (256)
++.++.|++|+++||+++.|+++|++|.|+|..++++...+.+ .....+.+.++++..+++.+++. ++++.+.+....
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~ 80 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSS 80 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecC
Confidence 3578899999999999999999999999999999988654321 13455666677777778877654 567788887744
Q ss_pred CccccceeeEEEEeeCCCCCeeEEEEEEEEEeCch--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP--LYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 178 ~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p--Ll~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
+++. ..+.|+|.+.+ ++|+|+++++|+++.+ ++..++...++....+++++|+++|++
T Consensus 81 -~~~~-~~~~~~~~~~~--~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~e~ 140 (140)
T cd08865 81 -GPFP-YEDTYTFEPVG--GGTRVRYTAELEPGGFARLLDPLMAPAFRRRARAALENLKALLEA 140 (140)
T ss_pred -CCcc-eEEEEEEEEcC--CceEEEEEEEEccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC
Confidence 6664 68999999983 5799999999998643 456677888888888888888888864
No 16
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.64 E-value=1.7e-14 Score=114.15 Aligned_cols=135 Identities=10% Similarity=0.136 Sum_probs=106.8
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCC-CCeEEEEEEEeecCeEEEEEEEE-EecCC-CeEEEEe
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNP-DGSFDAELEIGFKFLVESYVSHV-ELNRP-KFVKTTA 175 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~-dg~~~Ael~V~~~g~~e~ytSrv-~~d~~-~rI~~~~ 175 (256)
.++.++.|++|+++||+++.|.++|++|.|+|++++++...+ .|. ...+....+ ..+..++ .++++ ++|.+..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~-~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~ 77 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGA-VRTVTLKDG---GTVRERLLALDDAERRYSYRI 77 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCe-EEEEEeCCC---CEEEEEehhcCccCCEEEEEe
Confidence 578899999999999999999999999999999999988653 222 223333322 2233333 35677 7899988
Q ss_pred cCC-ccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 SDS-SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 176 ~~~-GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
..+ .++..+.+.|+|.|.+ +++|+|+++++|+...+++..+++.+........++.++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~ 140 (140)
T cd07821 78 VEGPLPVKNYVATIRVTPEG-DGGTRVTWTAEFDPPEGLTDELARAFLTGVYRAGLAALKAALE 140 (140)
T ss_pred cCCCCCcccceEEEEEEECC-CCccEEEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHHHhhC
Confidence 654 6788899999999984 5689999999999999888888888888888888888888763
No 17
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.57 E-value=1.3e-12 Score=103.49 Aligned_cols=135 Identities=15% Similarity=0.147 Sum_probs=101.7
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCe-EEEEEEEEEecC-CCeEEEE
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFL-VESYVSHVELNR-PKFVKTT 174 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~-~e~ytSrv~~d~-~~rI~~~ 174 (256)
|.+++.+..|++||++||++++|+++|++|.|.+.++++++.++. .....+...+. ...++ ...+++ +..+.++
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~-i~~~~~~~~~~~~~ 76 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGP---GTERTVRVAGRGTVREE-ITEYDPEPRRITWR 76 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECST---EEEEEEEECSCSEEEEE-EEEEETTTTEEEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcccccc---ceeEEEEeccccceeEE-EEEecCCCcEEEEE
Confidence 778999999999999999999999999999999999999984332 23344555552 22222 233455 6788888
Q ss_pred ecCCccccceeeEEEEeeCCCCCeeEEEEEEEEEe--CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKF--HSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 175 ~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef--~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
.. ..++..+.+.|+|+|.+ ++|+|+++++|++ ..++...++...++...++.++.+++.||
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~--~gt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~E 139 (139)
T PF10604_consen 77 FV-PSGFTNGTGRWRFEPVG--DGTRVTWTVEFEPGLPGWLAGPLLRPAVKRIVREALENLKRAAE 139 (139)
T ss_dssp EE-SSSSCEEEEEEEEEEET--TTEEEEEEEEEEESCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE-ecceeEEEEEEEEEEcC--CCEEEEEEEEEEEeccchhhHHHHHHHHHHHHHHHHHHHhcccC
Confidence 85 46777889999999984 5599999999997 23445666777777788888888888775
No 18
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.49 E-value=1.8e-12 Score=105.25 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=98.7
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCC---eEEEEEEEeecCeEEEEEEEEE-ecCCCeEEEEe
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDG---SFDAELEIGFKFLVESYVSHVE-LNRPKFVKTTA 175 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg---~~~Ael~V~~~g~~e~ytSrv~-~d~~~rI~~~~ 175 (256)
++.+..|++|+++||+.++|++++|+|.|.|.+++++...++. -....+.+...++..+|+++++ ++++.++.+++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f~~~~ 80 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPPRRFVDEQ 80 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCCCeEEEEe
Confidence 4678899999999999999999999999999999999754321 0246677777777789998865 45566899988
Q ss_pred cCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHH
Q 025224 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSF 233 (256)
Q Consensus 176 ~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF 233 (256)
.. |+|+..+.+|+|++.+ ++|+|+..++|++....++.++. .-++..+++.|
T Consensus 81 ~~-G~~~~w~h~~~f~~~~--~gT~vt~~v~~~~p~g~lg~~~~---~~~~~~~~~~~ 132 (137)
T cd07820 81 VS-GPFRSWRHTHRFEAIG--GGTLMTDRVEYRLPLGPLGRLAA---PLVVRRYLERF 132 (137)
T ss_pred cc-CCchhCEEEEEEEECC--CceEEEEEEEEeCCchhHHHHHH---HHHHHHHHHHH
Confidence 65 9999999999999983 57999999999986544444433 33344444444
No 19
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.49 E-value=1.6e-12 Score=106.56 Aligned_cols=133 Identities=10% Similarity=0.182 Sum_probs=96.3
Q ss_pred EEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEe---c-CCCeEEEEec
Q 025224 101 EERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVEL---N-RPKFVKTTAS 176 (256)
Q Consensus 101 ~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~---d-~~~rI~~~~~ 176 (256)
+.+..|++||++||+++.|+++|+.|+|.|+..+++. ++.+.++++++.+++...|+-++++ + +++++.+...
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG---DDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEAT 78 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC---CCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEE
Confidence 4678899999999999999999999999998887743 2357889999999998888655444 3 5567766542
Q ss_pred C--C--ccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 025224 177 D--S--SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQA---ASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 177 ~--~--GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l---~~~~~~~v~~~mv~AF~kRA~ 238 (256)
. . +-.-.....|++.|. +++|+|++++++++..||.... ++..++++++..++.+++|++
T Consensus 79 g~~~~~~g~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~~~~l~~~~e 145 (146)
T cd07823 79 GKDARGQGTAEATVTLRLSPA--GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQFAANLEARLA 145 (146)
T ss_pred EecCCCcceEEEEEEEEEEec--CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 0 011245668999995 4789999999999999975433 455555555555555555553
No 20
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.48 E-value=5.4e-12 Score=100.42 Aligned_cols=134 Identities=12% Similarity=0.152 Sum_probs=98.1
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeC-CCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecC
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHN-PDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASD 177 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~-~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~ 177 (256)
.++.++.|++|++.||++++|+++||+|.|.|.+++++... +.| ...++.... +....+ ....+++++++.|...
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G-~~~~~~~~~-~~~~~~-~i~~~~p~~~~~~~~~- 77 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVG-SSFKMKPPG-LVRSTF-TVTELRPGHSFTWTGP- 77 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCC-cEEEEecCC-CCceEE-EEEEecCCCEEEEEec-
Confidence 57889999999999999999999999999999999998865 333 234444432 333333 2346678888888764
Q ss_pred CccccceeeEEEEeeCCCCCeeEEEEEEEEEeCc-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS-PLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 178 ~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~-pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
+++....+.|+|++.+ +++|+++++.+|.-.. ++.+.++...++...++++++|++.++
T Consensus 78 -~~~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lk~~~E 137 (138)
T cd08862 78 -APGISAVHRHEFEAKP-DGGVRVTTSESLSGPLAFLFGLFVGKKLRALLPEWLEGLKAAAE 137 (138)
T ss_pred -CCCEEEEEEEEEEEcC-CCcEEEEEEEEeecchHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 3344456799999973 4789998877665322 234567778888888899999988876
No 21
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.45 E-value=7.3e-12 Score=95.76 Aligned_cols=134 Identities=18% Similarity=0.249 Sum_probs=96.8
Q ss_pred EEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-CeEEEEEEEEEe-cCCCeEEEEecCC
Q 025224 101 EERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYVSHVEL-NRPKFVKTTASDS 178 (256)
Q Consensus 101 ~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~~e~ytSrv~~-d~~~rI~~~~~~~ 178 (256)
+.+..|++|+++||+++.|.++|++|+|+|.+++++...+.. ........+. +....+..+++. +++..+.+.....
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 80 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEGG-VGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGG 80 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCcc-ceeEEEEEecCCccccceEEEEEecCCCceEEEEecC
Confidence 567889999999999999999999999999999998764432 2333333332 334455555444 4445677776543
Q ss_pred ccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchh---HHHHHHHHHHHHHHHHHHHHHHH
Q 025224 179 SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL---YRQAASMFFKEVVSRLVGSFSER 236 (256)
Q Consensus 179 GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pL---l~~l~~~~~~~v~~~mv~AF~kR 236 (256)
+.+....+.|+|.+.+ +++|+|++.+++++..++ +..++..+++..+.+++.+|+++
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T cd07812 81 GGGVDGTGEWRLEPEG-DGGTRVTYTVEYDPPGPLLKVFALLLAGALKRELAALLRALKAR 140 (141)
T ss_pred CCCcceeEEEEEEECC-CCcEEEEEEEEEecCCcchhhhhHHHHHHHHhHHHHHHHHHHhh
Confidence 3334789999999984 348999999999999986 56666666666666666666543
No 22
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.41 E-value=3.1e-11 Score=95.58 Aligned_cols=137 Identities=12% Similarity=0.151 Sum_probs=97.8
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-CeEEEEEEE-EEecCCCeEEEEec
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYVSH-VELNRPKFVKTTAS 176 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~~e~ytSr-v~~d~~~rI~~~~~ 176 (256)
+++.+++|++|+++||+++.|.++|++|.|++..+.......++ ...+..... +....++.. ..+++++++.+...
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~--~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 78 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGA--RLRFVVKLPGGPPRSFKPRVTEVEPPRRLAWRGG 78 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCC--EEEEEEeCCCCCcEEEEEEEEEEcCCCEeEEEec
Confidence 36889999999999999999999999999999887765322222 233333332 233344433 56678889999875
Q ss_pred CCcc-ccceeeEEEEeeCCCCCeeEEEEEEEEE-eCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 177 DSSL-FDHLINIWEFNPGPSPGTCNLYFLVDFK-FHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 177 ~~Gp-Fk~L~G~W~f~p~~~~~~T~V~f~ldFe-f~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
..++ +-...+.|+|.+.+ +++|+|++..+|. +..++...++...+.+..+++++++++.|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~T~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~E 141 (141)
T cd07822 79 LPFPGLLDGEHSFELEPLG-DGGTRFVHRETFSGLLAPLVLLGLGRDLRAGFEAMNEALKARAE 141 (141)
T ss_pred CCCCcEeeEEEEEEEEEcC-CCcEEEEEeeEEEEEEhHHhhhhhHHHHhHhHHHHHHHHHHhhC
Confidence 5332 23567899999983 5789998887665 223455667788888888888888888774
No 23
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.27 E-value=3e-10 Score=90.20 Aligned_cols=135 Identities=12% Similarity=-0.034 Sum_probs=93.5
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEE-EEEEecCCCeEEEEecCC
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKTTASDS 178 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~yt-Srv~~d~~~rI~~~~~~~ 178 (256)
+..++.|++|+++||+++.|.++||+|.|.|..+.+....+ +...... ....+...... ....++++.+|.+.....
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~G-g~~~~~~-~~~~g~~~~~~~~i~~~~~~~~i~~~~~~~ 79 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVG-GRWFFFM-TGPDGEEGWVSGEVLEVEPPRRLVFTWAFS 79 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCC-ceEEEEE-ECCCCCEEeccEEEEEEcCCCeEEEEeccc
Confidence 67889999999999999999999999999855555544433 3333222 22222233333 345567878888887643
Q ss_pred c--cccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 179 S--LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 179 G--pFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
+ ++......|+|.|.+ ++|+|++.+++...... ......-.......+++.+++.|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~T~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~lk~~~E~ 139 (139)
T cd07814 80 DETPGPETTVTVTLEETG--GGTRLTLTHSGFPEEDA-EQEAREGMEEGWTGTLDRLKALLEK 139 (139)
T ss_pred CCCCCCceEEEEEEEECC--CCEEEEEEEEccChHhH-HHHHHhCHhhHHHHHHHHHHHHhhC
Confidence 2 467889999999983 67999999999887533 3334444444566777888877763
No 24
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.14 E-value=7.8e-10 Score=95.59 Aligned_cols=136 Identities=10% Similarity=0.073 Sum_probs=117.9
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEee-cCeEEEEEEEEEecCCC-eEEEE
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF-KFLVESYVSHVELNRPK-FVKTT 174 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~-~g~~e~ytSrv~~d~~~-rI~~~ 174 (256)
-..++...+|+.|++|||++=.|.|..|.|+.|..+++|++... .+|.+.. .+...+|.++++-|.++ +|.|.
T Consensus 69 ~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it~d~~~e~I~W~ 143 (217)
T COG5637 69 PIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR-----SRWKANAPLGLEVEWEAEITKDIPGERIQWE 143 (217)
T ss_pred ceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc-----cceeEcCCCCceEEEeehhhccCCCcEEeee
Confidence 35789999999999999999999999999999999999998754 4678887 67799999999999877 89999
Q ss_pred ecCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 175 ~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
+.+ |-=-...|.=+|.+.+ ++.|+|.+.+.|.+..-+...+..++|.+..++.|.+=.+|-++
T Consensus 144 Sl~-Ga~v~NsG~VrF~~~p-g~~t~V~v~lsY~~Pgg~~~a~va~~fgeepeqqI~~DL~RFk~ 206 (217)
T COG5637 144 SLP-GARVENSGAVRFYDAP-GDSTEVKVTLSYRPPGGLLGAVVAKLFGEEPEQQIQDDLERFKE 206 (217)
T ss_pred cCC-CCcCCCCccEEeeeCC-CCceEEEEEEEecCCccHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 987 6555678999999997 47899999999999999999999999999998888665454443
No 25
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.09 E-value=2.4e-09 Score=93.89 Aligned_cols=142 Identities=15% Similarity=0.187 Sum_probs=107.5
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecC-e-EEEEEEE-E---EecCCCe
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSH-V---ELNRPKF 170 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g-~-~e~ytSr-v---~~d~~~r 170 (256)
+..+.....|++|++++.+++.|++.||+|+|.|.++++++..+......-+.+.+.- + ...+... . .++.++.
T Consensus 45 ~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~~ 124 (215)
T cd08877 45 LLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENGQ 124 (215)
T ss_pred EEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeeccCCC
Confidence 6789999999999999999999999999999999999999886644444445554432 3 2223322 1 1223333
Q ss_pred E--EEEecCCc-----------c--------ccceeeEEEEeeCCCCCeeEEEEEEEEEeCch-hHHHHHHHHHHHHHHH
Q 025224 171 V--KTTASDSS-----------L--------FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP-LYRQAASMFFKEVVSR 228 (256)
Q Consensus 171 I--~~~~~~~G-----------p--------Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p-Ll~~l~~~~~~~v~~~ 228 (256)
| .....++. | .....|.|.|+|.+ ++.|.|++....+++.. ++.++++.+.+.++..
T Consensus 125 i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~-~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~~ 203 (215)
T cd08877 125 IVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS-PTKCYLRFVANVDPKMSLVPKSLLNFVARKFAGL 203 (215)
T ss_pred EEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC-CCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHHH
Confidence 3 33333211 1 13467999999984 68999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHH
Q 025224 229 LVGSFSERCRL 239 (256)
Q Consensus 229 mv~AF~kRA~~ 239 (256)
++.++++.|++
T Consensus 204 ~~~~l~k~~~~ 214 (215)
T cd08877 204 LFEKIQKAAKN 214 (215)
T ss_pred HHHHHHHHHhc
Confidence 99999999875
No 26
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=99.05 E-value=2.1e-08 Score=82.52 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=99.3
Q ss_pred EEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEe---cCCCe--EEEEecC
Q 025224 103 RRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVEL---NRPKF--VKTTASD 177 (256)
Q Consensus 103 s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~---d~~~r--I~~~~~~ 177 (256)
+..|++|+++||+.+.|.+.+-.=+|.|++.+.+. + .+.+.+++++++++-+|.-++++ ++++. +.++-..
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~---~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~~~g~g 77 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-D---EYKGKVKVKVGPIKGTFDGEVRITEIDPPESYTLEFEGRG 77 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-T---EEEEEEEEESCCCEEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-c---EEEEEEEEEeccEEEEEEEEEEEEEcCCCcceEeeeeccC
Confidence 56799999999999999999999999999988776 3 47999999999999999988766 45554 5665543
Q ss_pred CccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLI 240 (256)
Q Consensus 178 ~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~l 240 (256)
.+---...+.=++...++++ |+|+|+.++++..++ ..+.+.+.+.++++|++.|.+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-T~v~~~~~~~~~G~l-a~~g~~~i~~~~~~l~~~f~~~l~~~ 138 (140)
T PF06240_consen 78 RGGGSSASANITLSLEDDGG-TRVTWSADVEVGGPL-ASLGQRLIESVARRLIEQFFENLERK 138 (140)
T ss_dssp CTCCEEEEEEEEEEECCCTC-EEEEEEEEEEEECHH-HHC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccceEEEEEEEEEcCCCCC-cEEEEEEEEEEccCH-HHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 32223333444444443334 999999999998776 56667899999999999998887764
No 27
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.04 E-value=8.5e-09 Score=83.14 Aligned_cols=135 Identities=11% Similarity=0.066 Sum_probs=85.5
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEe----CCCCeEEEEEEEeecCeEEEEEEEE-EecCCCeEEE
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKH----NPDGSFDAELEIGFKFLVESYVSHV-ELNRPKFVKT 173 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r----~~dg~~~Ael~V~~~g~~e~ytSrv-~~d~~~rI~~ 173 (256)
+++.++.|++||++||+++.|.++||+|.|.+....+..- ..++ ...+.+...+....+..++ .++|++++.+
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~--~~~~~~~~~g~~~~~~~~v~~~~p~~~l~~ 78 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGD--VFRMAMRLDGGPYRITNHVVAFEENRLIAW 78 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCC--EEEEEEEcCCCceEEEEEEEEECCCCEEEE
Confidence 4788999999999999999999999999985442222211 1122 2233333334444565554 5678888999
Q ss_pred Eec-CCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHH--HHHHHHHHHHHHHHHHHH
Q 025224 174 TAS-DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAAS--MFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 174 ~~~-~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~--~~~~~v~~~mv~AF~kRA 237 (256)
+.. .+.+.......|+|++.+ +++|+|++..+|.-.. .+..+.+ .....-....++.+++-+
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~-~g~T~vt~~~~~~g~~-~~~~~~~~~~~~~~g~~~~l~~L~~~~ 143 (144)
T cd07825 79 RPGPAGQEPGGHRWRWELEPIG-PGRTRVTETYDWSAVT-DLKELLGFPAFPEVQLEASLDRLATLA 143 (144)
T ss_pred EccCCCCCCCceeEEEEEEECC-CCcEEEEEEEeccCCh-hhhhccccCCCCHHHHHHHHHHHHHHh
Confidence 864 222333456788999983 4789999988777553 3333322 334555566666666544
No 28
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.97 E-value=2.5e-08 Score=87.99 Aligned_cols=141 Identities=10% Similarity=0.216 Sum_probs=102.9
Q ss_pred cEEEEEEEEcCCHHHHH-HHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec----Ce-EEEEEEEEEecCC--C
Q 025224 98 KVYEERRVLGYSPEQLF-DVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK----FL-VESYVSHVELNRP--K 169 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVf-dLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~----g~-~e~ytSrv~~d~~--~ 169 (256)
..+.....+++|++++| +|+.|++.+++|.+-|.+++++++-++.....- .+... .+ ...|+....+.+. .
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y-~v~~p~~~~pv~~RDfV~~r~~~~~~~~ 127 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSY-DVAAGAAGGVVSPRDFVNVRRIERRRDR 127 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEE-EEccccccCCCCCCceEEEEEEEecCCc
Confidence 67888999999999998 699999999999999999999998764433332 33221 23 4456655554332 2
Q ss_pred eEEEEe-cCC-------ccc---cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 FVKTTA-SDS-------SLF---DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 170 rI~~~~-~~~-------GpF---k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
.|.+.. ... |-. .+..|.|.+.+..+++.|+|+|.+..+++.-|+..+++.++.++.-..+.+++++++
T Consensus 128 ~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~~~~~~~~~~~~LR~~~~ 207 (209)
T cd08906 128 YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQSLAATMFEFASHLRQRIR 207 (209)
T ss_pred EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333211 110 111 245687777652246789999999999999999999999999999999999999986
Q ss_pred H
Q 025224 239 L 239 (256)
Q Consensus 239 ~ 239 (256)
.
T Consensus 208 ~ 208 (209)
T cd08906 208 D 208 (209)
T ss_pred h
Confidence 5
No 29
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.89 E-value=3.3e-08 Score=86.98 Aligned_cols=142 Identities=13% Similarity=0.192 Sum_probs=102.7
Q ss_pred cEEEEEEEEcCCHHHHH-HHHHchhcccCCCCCcceEEEEEeCCCCeEEEE-EEEeec--Ce-EEEEEEEEEecC--CCe
Q 025224 98 KVYEERRVLGYSPEQLF-DVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAE-LEIGFK--FL-VESYVSHVELNR--PKF 170 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVf-dLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ae-l~V~~~--g~-~e~ytSrv~~d~--~~r 170 (256)
+.+....++++++++++ .++.|++.+++|.+-|.++++|++-++.....- ....+. .+ ...|+....+.+ .+.
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 67888999999999999 999999999999999999999998765432222 222221 13 334554444432 222
Q ss_pred EEEE-ecCC-------cc--ccceeeEEEEeeCCC-CCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 171 VKTT-ASDS-------SL--FDHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 171 I~~~-~~~~-------Gp--Fk~L~G~W~f~p~~~-~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
|.+. ..++ |. -+...|.|.|+|+++ ++.|+|++.+..+++..|+..+++.++.++.-..+.++++++..
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHHhHHhHHHHHHHHHHHHhc
Confidence 2221 1111 11 134569999999842 37899999999999999999999999999999999999988763
No 30
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.79 E-value=2.6e-07 Score=80.69 Aligned_cols=142 Identities=16% Similarity=0.284 Sum_probs=100.9
Q ss_pred cEEEEEEEEcCCHHHHHH-HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEee----cCe-EEEEEEEEEecC-CC-
Q 025224 98 KVYEERRVLGYSPEQLFD-VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF----KFL-VESYVSHVELNR-PK- 169 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfd-LVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~----~g~-~e~ytSrv~~d~-~~- 169 (256)
+.+..+.+++++++++|+ ++.|++.+++|.+.|.+++++++-+++.... ..+.. ..+ ...|.....+.. ++
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~-y~~~~~~~~~~vs~RDfV~~r~~~~~~~~ 126 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDIS-YQVAAEAGGGLVSPRDFVSLRHWGIRENC 126 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEE-EEEecCcCCCcccccceEEEEEEEecCCe
Confidence 568888899999999986 6789999999999999999999876443222 22221 112 233433333221 12
Q ss_pred -eEEEEecCC-------ccc--cceeeEEEEeeCCC-CCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 -FVKTTASDS-------SLF--DHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 170 -rI~~~~~~~-------GpF--k~L~G~W~f~p~~~-~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
.|...+.++ |.. ....|.|.|+|.++ ++.|+|++.+..+++..++.++++.+...+.-.++++++++++
T Consensus 127 ~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~~~~~~~~~~~Lr~~~~ 206 (208)
T cd08868 127 YLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQALASVLLDFMKHLRKRIA 206 (208)
T ss_pred EEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhhHHHHHHHHHHHHHHHh
Confidence 222333221 111 23458999999852 3679999999999999999999999999999999999999987
Q ss_pred HH
Q 025224 239 LI 240 (256)
Q Consensus 239 ~l 240 (256)
++
T Consensus 207 ~~ 208 (208)
T cd08868 207 TL 208 (208)
T ss_pred hC
Confidence 63
No 31
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.79 E-value=4.1e-07 Score=79.89 Aligned_cols=143 Identities=8% Similarity=0.064 Sum_probs=104.9
Q ss_pred ccEEEEEEEE-cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCC-CeEEEEEEEeecC-e-EEEEEEE--EEecCCC-
Q 025224 97 SKVYEERRVL-GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPD-GSFDAELEIGFKF-L-VESYVSH--VELNRPK- 169 (256)
Q Consensus 97 m~~~~~s~~V-~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~d-g~~~Ael~V~~~g-~-~e~ytSr--v~~d~~~- 169 (256)
+..+....++ +++++++++++.|++.+++|.+.|.+.+++++.++ +....-+.+.+.. + ...|+.. ...++++
T Consensus 44 ~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 123 (207)
T cd08911 44 LYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEENK 123 (207)
T ss_pred cEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCCC
Confidence 4567776666 99999999999999999999999999999998543 3334555555552 3 2334433 3334433
Q ss_pred e--EEEEecCC-------cc--ccceeeEEEEeeCC--CCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 F--VKTTASDS-------SL--FDHLINIWEFNPGP--SPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSER 236 (256)
Q Consensus 170 r--I~~~~~~~-------Gp--Fk~L~G~W~f~p~~--~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kR 236 (256)
. |....+++ |. ...+.|.|.++|.. ++++|++.|....+++..|+..+++.++.....++++.+++-
T Consensus 124 ~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~~~~~~~~l~~l~~a 203 (207)
T cd08911 124 LIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVAMSGMPDFLERLRNA 203 (207)
T ss_pred EEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHHHhhccHHHHHHHHH
Confidence 2 22222221 11 13467999999973 246899999999999999999999999999999999999887
Q ss_pred HHH
Q 025224 237 CRL 239 (256)
Q Consensus 237 A~~ 239 (256)
|++
T Consensus 204 ~~~ 206 (207)
T cd08911 204 ALK 206 (207)
T ss_pred Hhc
Confidence 753
No 32
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.79 E-value=4.7e-07 Score=79.36 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=107.0
Q ss_pred ccEEEEEEEE-cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCC-CeEEEEEEEeecC-e-EEEEEEEEEe--cCCC-
Q 025224 97 SKVYEERRVL-GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPD-GSFDAELEIGFKF-L-VESYVSHVEL--NRPK- 169 (256)
Q Consensus 97 m~~~~~s~~V-~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~d-g~~~Ael~V~~~g-~-~e~ytSrv~~--d~~~- 169 (256)
+..+....++ +++++++++++.|.+.+++|.+.|.+.++++.+++ +.....+.+.+.- + ...|+....+ +.++
T Consensus 49 ~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~~ 128 (209)
T cd08870 49 LYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDRS 128 (209)
T ss_pred ceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCCE
Confidence 5678888888 56999999999999999999999999999999765 3334555555552 3 4446544333 2123
Q ss_pred -eEEEEecCC------cc--ccceeeEEEEeeCC-CCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 -FVKTTASDS------SL--FDHLINIWEFNPGP-SPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 170 -rI~~~~~~~------Gp--Fk~L~G~W~f~p~~-~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
.|.....++ |. .+.+.+.|.++|.+ ++++|++++....+.+..|++.+++.++..++..+++.+.+.++
T Consensus 129 ~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~~~~~~~~l~~l~~a~~ 207 (209)
T cd08870 129 YVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAVKRGMPGFLKKLENALR 207 (209)
T ss_pred EEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 233333222 11 24578999999983 25789999999999999999999999999999999999988774
No 33
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.74 E-value=7e-07 Score=78.71 Aligned_cols=144 Identities=10% Similarity=0.065 Sum_probs=103.4
Q ss_pred cccEEEEEEEE-cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecC-e-EEEEEEEEEe-cCCCe-
Q 025224 96 LSKVYEERRVL-GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSHVEL-NRPKF- 170 (256)
Q Consensus 96 ~m~~~~~s~~V-~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g-~-~e~ytSrv~~-d~~~r- 170 (256)
.+..+..+.++ +++++++++++.|.+.+++|.+.|.+++++++-+++.........+.. + ...|+....+ ..++.
T Consensus 45 ~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~ 124 (222)
T cd08871 45 SIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY 124 (222)
T ss_pred ceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence 46678887776 699999999999999999999999999999986544323333333221 2 2334433322 22232
Q ss_pred E-EEEecCC-------ccc--cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 171 V-KTTASDS-------SLF--DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRLI 240 (256)
Q Consensus 171 I-~~~~~~~-------GpF--k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~l 240 (256)
+ ...+.+. |-. +...+.|.|+|.+ +++|+|++....+++..++.++++.+.......+++.+++-|++.
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~t~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y 203 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG-PKGCTLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKY 203 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEECC-CCCEEEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 2 2222211 111 1246889999984 678999999999999999999999999999999999999888764
No 34
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.72 E-value=3.3e-07 Score=80.90 Aligned_cols=130 Identities=9% Similarity=0.001 Sum_probs=93.0
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec--C--eEEEEEEEEEecCC--C-e
Q 025224 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--F--LVESYVSHVELNRP--K-F 170 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~--g--~~e~ytSrv~~d~~--~-r 170 (256)
+.+.....++++++++++++.|++.+++|.+.|++++|+++-++......+..... . -...|+....+..+ . .
T Consensus 45 ~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~v 124 (205)
T cd08874 45 HGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSV 124 (205)
T ss_pred ceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEE
Confidence 45556778999999999999999999999999999999998654433444444422 1 23445444333222 2 2
Q ss_pred EEEEecCC-----cc-----ccceeeEEEEeeC---CCCCeeEEEEEEEEEeC-chhHHHHHHHHHHHHHHH
Q 025224 171 VKTTASDS-----SL-----FDHLINIWEFNPG---PSPGTCNLYFLVDFKFH-SPLYRQAASMFFKEVVSR 228 (256)
Q Consensus 171 I~~~~~~~-----Gp-----Fk~L~G~W~f~p~---~~~~~T~V~f~ldFef~-~pLl~~l~~~~~~~v~~~ 228 (256)
|..+++++ .+ ...+.|.|.++|. + ++.|+|+|.+..+++ .-++..+++.+..+....
T Consensus 125 i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g-~~~t~vty~~q~DPggg~iP~~l~N~~~~~~p~~ 195 (205)
T cd08874 125 VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEG-NQYTRVIYIAQVALCGPDVPAQLLSSLSKRQPLV 195 (205)
T ss_pred EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCC-CCcEEEEEEEEECCCCCCCCHHHHhHHHHhccHH
Confidence 33444332 11 1356799999998 5 468999999999999 789999999998887543
No 35
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.69 E-value=9.5e-07 Score=77.68 Aligned_cols=140 Identities=13% Similarity=0.172 Sum_probs=98.6
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcc--cCCCCCcceEEEEEeCCCCeEEEEEEEeec---Ce-EEEEEEEEEec--CCCe
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLY--HGFVPWCQRSEILKHNPDGSFDAELEIGFK---FL-VESYVSHVELN--RPKF 170 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~Y--PeFlP~c~~s~VL~r~~dg~~~Ael~V~~~---g~-~e~ytSrv~~d--~~~r 170 (256)
.+....+++++++++|+++.|++.+ ++|.+-|.+++++++-++......+..... .+ ...|+....+. .++.
T Consensus 47 ~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~ 126 (208)
T cd08903 47 LYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGT 126 (208)
T ss_pred EEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCce
Confidence 3888999999999999999999887 999999999999999765433333322111 12 23344433332 2223
Q ss_pred EE--EEecCC-------ccc---cc-eeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 171 VK--TTASDS-------SLF---DH-LINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 171 I~--~~~~~~-------GpF---k~-L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
|. +...++ |.. .+ ..+.|+..|. +++.|+|++.+..+++.-|+..+++.++.++.-..+..+++..
T Consensus 127 i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~-~~~~t~v~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~Lr~~~ 205 (208)
T cd08903 127 ISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG-EPDKTQLVSFFQTDLSGYLPQTVVDSFFPASMAEFYNNLTKAV 205 (208)
T ss_pred EEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC-CCCceEEEEEEEeccCCCcCHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32 323222 222 22 3566666665 3578999999999999999999999999999989999998887
Q ss_pred HH
Q 025224 238 RL 239 (256)
Q Consensus 238 ~~ 239 (256)
++
T Consensus 206 ~~ 207 (208)
T cd08903 206 KA 207 (208)
T ss_pred hh
Confidence 64
No 36
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=98.60 E-value=5.2e-06 Score=71.37 Aligned_cols=143 Identities=8% Similarity=0.027 Sum_probs=102.8
Q ss_pred cccEEEEEEEEcCCHHH-HHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec--Ce-EEEEEEEEEe--cCCC
Q 025224 96 LSKVYEERRVLGYSPEQ-LFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FL-VESYVSHVEL--NRPK 169 (256)
Q Consensus 96 ~m~~~~~s~~V~a~~eq-VfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~--g~-~e~ytSrv~~--d~~~ 169 (256)
.+..+....++++++++ +.+++.|.+.+++|.+.|.++++++.-+++........... ++ ...|.....+ +.++
T Consensus 43 ~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 43 PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 46889999999999997 77899999999999999999999998765432233222222 22 2334332222 2233
Q ss_pred -e-EEEEecCCccc---------cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 -F-VKTTASDSSLF---------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 170 -r-I~~~~~~~GpF---------k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
. |...+.+..-+ ..+.+.|.|+|.+ ++.|+|++....+++..++..+++.+.......+++.+++.++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~D~~G~iP~~lvn~~~~~~~~~~~~~~~~~~~ 201 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHADLKGWLPHWLVRSLIKSGLAEFAKTWVATLQ 201 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEEecCCCccceeehhhhhhhHHHHHHHHHHHHH
Confidence 2 33333322111 3467899999985 5779999999999999999999999999999999998876665
Q ss_pred H
Q 025224 239 L 239 (256)
Q Consensus 239 ~ 239 (256)
.
T Consensus 202 ~ 202 (206)
T smart00234 202 K 202 (206)
T ss_pred H
Confidence 4
No 37
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.59 E-value=8.7e-06 Score=67.65 Aligned_cols=112 Identities=15% Similarity=0.220 Sum_probs=84.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhc-c-cCCCCCcceEEEEEeCC-CCeEEEEEEEeecCeEEEEEEEEE-ecCCC-eEEE
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDL-Y-HGFVPWCQRSEILKHNP-DGSFDAELEIGFKFLVESYVSHVE-LNRPK-FVKT 173 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~-Y-PeFlP~c~~s~VL~r~~-dg~~~Ael~V~~~g~~e~ytSrv~-~d~~~-rI~~ 173 (256)
.++.+..|++|++++|+++.|.+. . +.|.|..+++++++-++ .|. .-.|+..-++-...+..++. +|+.+ ++.+
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~Gs-vR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y 80 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGS-IKLITFGPGGKVKYVKERIDAVDEENKTYKY 80 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCce-EEEEEEcCCCcceEEEEEEEEEcccccEEEE
Confidence 477889999999999999999994 4 66889999999887642 132 33455544442334666655 45534 7888
Q ss_pred EecCCcc----ccceeeEEEEeeCCCCCeeEEEEEEEEEeCch
Q 025224 174 TASDSSL----FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (256)
Q Consensus 174 ~~~~~Gp----Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p 212 (256)
+.+++++ |++..++.+|.|. ++++|.|.+.++|+...+
T Consensus 81 ~vveg~~~~~~~~~y~~t~~v~~~-~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 81 TVIEGDVLKDGYKSYKVEIKFVPK-GDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEecccccCceEEEEEEEEEEEC-CCCCEEEEEEEEEEECCC
Confidence 8877543 7888999999998 468999999999998875
No 38
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.57 E-value=6.1e-06 Score=68.92 Aligned_cols=138 Identities=12% Similarity=0.196 Sum_probs=96.0
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecC-e-EEEEEEE--EEecCCCe-
Q 025224 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSH--VELNRPKF- 170 (256)
Q Consensus 96 ~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g-~-~e~ytSr--v~~d~~~r- 170 (256)
.++.+....+++++++++++++.|++.+++|.|.|.+++|+++.+++............ + ...|... ...+.++.
T Consensus 37 ~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 37 GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 36788999999999999999999999999999999999999997654333333333332 2 1122222 11123232
Q ss_pred -EEEEecCC-------ccc--cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHH
Q 025224 171 -VKTTASDS-------SLF--DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFS 234 (256)
Q Consensus 171 -I~~~~~~~-------GpF--k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~ 234 (256)
+...+.+. +.. ....+.|.|+|. +++.|+|++....+++..++..+++.+.......+++.+.
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~-~~~~~~vt~~~~~D~~g~iP~~~~~~~~~~~~~~~~~~~~ 189 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPL-DPGKTKVTYVLQVDPKGSIPKSLVNSAAKKQLASFLKDLR 189 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEEC-CCCCEEEEEEEeeCCCCCccHHHHHhhhhhccHHHHHHHH
Confidence 22333332 111 122577999999 4689999999999999999999999987766666665553
No 39
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.52 E-value=2.9e-06 Score=74.66 Aligned_cols=140 Identities=14% Similarity=0.145 Sum_probs=99.2
Q ss_pred cccEEEEEEEEc-CCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecC-e-EEEEEEE---EEecCCC
Q 025224 96 LSKVYEERRVLG-YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSH---VELNRPK 169 (256)
Q Consensus 96 ~m~~~~~s~~V~-a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g-~-~e~ytSr---v~~d~~~ 169 (256)
.+..+.....++ ++++++++++.|++.+++|.+.|.+ +++...++....-+.+.+.- + ...|+.. ...+.+.
T Consensus 47 ~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 47 GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 356788888888 7999999999999999999999997 55554434334445554432 2 2334322 1222222
Q ss_pred -eEEE---EecCC-------cc--ccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 -FVKT---TASDS-------SL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSER 236 (256)
Q Consensus 170 -rI~~---~~~~~-------Gp--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kR 236 (256)
.+.+ ...+. |. .....|.|.|+|.+ +++|+++|....+++..++..+++.+.......+++.+.+-
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~-~~~t~i~~~~~~DPgG~IP~wlvN~~~~~~~~~~l~~l~ka 203 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG-KKGSKVFMYYFDNPGGMIPSWLINWAAKNGVPNFLKDMQKA 203 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC-CCceEEEEEEEeCCCCcchHHHHHHHHHHhhHHHHHHHHHH
Confidence 1211 11111 11 13467999999984 67899999999999999999999999999999999999887
Q ss_pred HH
Q 025224 237 CR 238 (256)
Q Consensus 237 A~ 238 (256)
|+
T Consensus 204 ~~ 205 (207)
T cd08910 204 CQ 205 (207)
T ss_pred Hh
Confidence 74
No 40
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.52 E-value=1.3e-05 Score=67.42 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=103.8
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecC----CCeEEEE
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR----PKFVKTT 174 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~----~~rI~~~ 174 (256)
.|+.+..|++|+++||+.+.|-|....-+|.|++.+ ..++ .+.+.+.+..+.++.++..++.+.. ++.|.+.
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e---~~g~-e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVE---TNGD-EYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceee---ecCC-eEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence 467788899999999999999999999999999854 3334 4799999999999999999887743 3466665
Q ss_pred ecC--CccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 175 ASD--SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 175 ~~~--~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
-.- .+-|-.....=.+.|. + ++|+|.|..+.+.. .++.+|-+...+.++++|++.|.+...+
T Consensus 78 g~G~~~~g~~~~~~~v~l~~~-g-~gt~v~w~~~~~~g-g~laqlGsr~i~~~~~kli~~~~~~l~~ 141 (146)
T COG3427 78 GSGGGAAGFADGTVDVQLEPS-G-EGTRVNWFADANVG-GKLAQLGSRLIDSVARKLINRFFDCLSS 141 (146)
T ss_pred eecccccceeeeeeEEEEEEc-C-CCcEEEEEEEcccc-HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 521 1245556677777886 3 45999999999977 4567777788888888888887766554
No 41
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=98.51 E-value=2.1e-06 Score=77.63 Aligned_cols=126 Identities=6% Similarity=-0.060 Sum_probs=86.9
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec---Ce-EEEEEEEEEecC--CCe
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK---FL-VESYVSHVELNR--PKF 170 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~---g~-~e~ytSrv~~d~--~~r 170 (256)
+..+.....+++|++++|+++.|++.+++|.+.|.+++++++-++... .-...... ++ ...|+......+ ++.
T Consensus 80 ~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~g 158 (240)
T cd08913 80 FLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSLSGHGKPQDFVILASRRKPCDNG 158 (240)
T ss_pred ccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEecCCCCCCCCCCeEEEEEEEEeccCCC
Confidence 457788889999999999999999999999999999999998764432 22222221 23 344555443311 111
Q ss_pred ----EEEEecCC-------cc--ccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHH
Q 025224 171 ----VKTTASDS-------SL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEV 225 (256)
Q Consensus 171 ----I~~~~~~~-------Gp--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v 225 (256)
|...+... |- ...+.|.|.+.|.+ ++.|+|+|....+.+ -|+..+++.+.-++
T Consensus 159 ~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~-~~~t~vtY~~~~dPG-~LP~~~~N~~~~~~ 224 (240)
T cd08913 159 DPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEES-DQLTKVSYYNQATPG-VLPYISTDIAGLSS 224 (240)
T ss_pred ccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECC-CCcEEEEEEEEeCCc-cccHHHhhhhhhcc
Confidence 33332211 10 24467999999984 689999999877776 89999988876654
No 42
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.48 E-value=7.3e-06 Score=71.42 Aligned_cols=136 Identities=9% Similarity=0.050 Sum_probs=94.5
Q ss_pred ccccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-Ce-EEEEEEEEEec--CCC-
Q 025224 95 VLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FL-VESYVSHVELN--RPK- 169 (256)
Q Consensus 95 ~~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~-~e~ytSrv~~d--~~~- 169 (256)
..++.+..+..|++++++|++++.|.. ++|.+.|.+++++++-++........+... ++ ...|+....+. .++
T Consensus 41 ~~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g 118 (197)
T cd08869 41 HPLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKG 118 (197)
T ss_pred CcEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCC
Confidence 357889999999999999999998863 999999999999998764432233332221 22 44555553222 222
Q ss_pred --eEEEEecCC------cc--ccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 --FVKTTASDS------SL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFS 234 (256)
Q Consensus 170 --rI~~~~~~~------Gp--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~ 234 (256)
.|...+++. |. ...+.|.|.++|.+ +++|+|+|.+..+++.-++.++++.+- .++.++|+.++
T Consensus 119 ~~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~-~~~t~vty~~~~Dp~G~iP~wl~N~~~-~~~~~~~~~l~ 191 (197)
T cd08869 119 ACVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCG-SGKSRVTHICRVDLRGRSPEWYNKVYG-HLCARELLRIR 191 (197)
T ss_pred cEEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECC-CCCeEEEEEEEECCCCCCCceeecchH-hHHHHHHHHHH
Confidence 344555532 11 13457999999984 689999999999999999999977655 55555555543
No 43
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.47 E-value=4e-06 Score=75.68 Aligned_cols=116 Identities=7% Similarity=-0.081 Sum_probs=80.9
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-Ce-EEEEEEEEEec---CC-C
Q 025224 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FL-VESYVSHVELN---RP-K 169 (256)
Q Consensus 96 ~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~-~e~ytSrv~~d---~~-~ 169 (256)
.+..+.....++++++++|+++.|++.+++|.+.|.+++++++-++......+..... ++ ...|+....+. +. +
T Consensus 75 ~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 75 GVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred CceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 3567888888999999999999999999999999999999998654333344443332 22 34455544432 11 1
Q ss_pred --eEEEEecC-------Ccc--ccceeeEEEEeeCCCCCeeEEEEEEEEEeCch
Q 025224 170 --FVKTTASD-------SSL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (256)
Q Consensus 170 --rI~~~~~~-------~Gp--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p 212 (256)
.|....++ .|- ...+.|.|.++|.+ +++|+|+|....+++.-
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~-~~~t~VtY~~~~dPg~~ 207 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDC-GTCTEVSYYNETNPKLL 207 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECC-CCcEEEEEEEEcCCCcc
Confidence 23344333 111 24567999999984 68999999999998743
No 44
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=98.43 E-value=9.9e-06 Score=72.86 Aligned_cols=145 Identities=4% Similarity=-0.015 Sum_probs=101.7
Q ss_pred cccEEEEEEEEc-CCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-Ce-EEEEEEEEEe-------
Q 025224 96 LSKVYEERRVLG-YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FL-VESYVSHVEL------- 165 (256)
Q Consensus 96 ~m~~~~~s~~V~-a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~-~e~ytSrv~~------- 165 (256)
.+..+....+++ ++++++++++.|.+.+++|...|.+.+|+++-+++....-..+... ++ ...+.....+
T Consensus 50 ~~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~ 129 (235)
T cd08872 50 VLDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALE 129 (235)
T ss_pred eeeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCccc
Confidence 344688888888 9999999999999999999999999999988654332222222221 00 1111111110
Q ss_pred ---------------c----CCC--eEEEEec----CCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHH
Q 025224 166 ---------------N----RPK--FVKTTAS----DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASM 220 (256)
Q Consensus 166 ---------------d----~~~--rI~~~~~----~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~ 220 (256)
. |++ .|++... ..+....-.|.|.|+|. +++|+|+|....+++.-++..+++.
T Consensus 130 ~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~--~~~~~ity~~~~dPgG~iP~wvvn~ 207 (235)
T cd08872 130 EPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD--NILCKITYVANVNPGGWAPASVLRA 207 (235)
T ss_pred cccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCC--CCeEEEEEEEEeCCCCCccHHHHHH
Confidence 0 111 3444331 11222222377999984 4799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC
Q 025224 221 FFKEVVSRLVGSFSERCRLIYG 242 (256)
Q Consensus 221 ~~~~v~~~mv~AF~kRA~~lyg 242 (256)
+.+..+.++|+.|.+-+.+.+.
T Consensus 208 ~~k~~~P~~l~~~~~~~~~~~~ 229 (235)
T cd08872 208 VYKREYPKFLKRFTSYVQEKTK 229 (235)
T ss_pred HHHhhchHHHHHHHHHHHHhcC
Confidence 9999999999999998887654
No 45
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.41 E-value=9.8e-06 Score=71.68 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=91.9
Q ss_pred ccccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-Ce-EEEEEEEEEe--c-CCC
Q 025224 95 VLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FL-VESYVSHVEL--N-RPK 169 (256)
Q Consensus 95 ~~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~-~e~ytSrv~~--d-~~~ 169 (256)
+.++.+..+..++++++++.+++.|. +++|.+.|.+++|+++-++........+... ++ ...|+....+ + +.+
T Consensus 49 s~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 49 PPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred CCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 46889999999999999999999988 9999999999999998664332233332221 12 3344443222 1 222
Q ss_pred --eEEEEecCC------cc-ccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHH
Q 025224 170 --FVKTTASDS------SL-FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLV 230 (256)
Q Consensus 170 --rI~~~~~~~------Gp-Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv 230 (256)
.|...+.+. +. ...+.|.|.|+|.+ +|+|+|+|....+++..++.++++.+-.-.+..++
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g-~g~t~vtyi~~~DPgG~iP~W~~N~~g~~~~~~~~ 195 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCG-SGKSKLTYMCRIDLRGHMPEWYTKSFGHLCAAEVV 195 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECC-CCcEEEEEEEEeCCCCCCcHHHHhhHHHHHHHHHH
Confidence 123332111 11 24468999999984 58999999999999999999999886655554443
No 46
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.39 E-value=1.1e-05 Score=63.98 Aligned_cols=128 Identities=10% Similarity=-0.005 Sum_probs=79.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEE-EEEecCCCeEEEEecCC
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVS-HVELNRPKFVKTTASDS 178 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytS-rv~~d~~~rI~~~~~~~ 178 (256)
+..++.|++||++||+++.|.+.|++|.+.+.- ..+...++.+ .+..+..+ ...... -..++++++|.++....
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~--~~~~~~G~~~--~~~~~~~~-~~~~~~~v~~~~~~~~l~~~~~~~ 76 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTV--ESDWKVGSAF--EYRRGDDG-TVDVEGEVLESDPPRRLVHTWRAV 76 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheeccccc--ccCCcCCCeE--EEEeCCCc-ccccceEEEEecCCCeEEEEEecC
Confidence 567899999999999999999999999987431 1111222322 22222111 111222 33467888887765421
Q ss_pred -c----cccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 179 -S----LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 179 -G----pFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
+ .-.....+|.|.+.+ ++|+|++..+..+..+. ........-..+++.+++.++
T Consensus 77 ~~~~~~~~~~~~v~~~l~~~~--~~t~l~~~~~~~~~~~~----~~~~~~~gw~~~l~~Lk~~~e 135 (136)
T cd08893 77 WDPEMAAEPPSRVTFEIEPVG--DVVKLTVTHDGFPPGSP----TLEGVSGGWPAILSSLKTLLE 135 (136)
T ss_pred CCcccCCCCCEEEEEEEEecC--CcEEEEEEecCCCCchh----HHHhhhcCHHHHHHHHHHHhc
Confidence 1 123567889999973 67999998876544432 223334455667777777765
No 47
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.39 E-value=2.2e-05 Score=68.47 Aligned_cols=140 Identities=11% Similarity=0.084 Sum_probs=96.9
Q ss_pred cEEEEEEEEcCCHHHHHHHHHc--hhcccCCCCCcceEEEEEeCCCCeEEEEEEEee--cC-e-EEEEEEE---EEecCC
Q 025224 98 KVYEERRVLGYSPEQLFDVVAA--VDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF--KF-L-VESYVSH---VELNRP 168 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaD--Ve~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~--~g-~-~e~ytSr---v~~d~~ 168 (256)
+.+..+..++++++++++++.| .+..++|.+.|.+++++++-+++.......... .+ + ...|... ..++..
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 5688999999999999999999 899999999999999999876443222222111 11 2 2223221 112111
Q ss_pred C-eEEEEecCC-------ccc--cceeeEEEEeeCC-CCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 169 K-FVKTTASDS-------SLF--DHLINIWEFNPGP-SPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 169 ~-rI~~~~~~~-------GpF--k~L~G~W~f~p~~-~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
. .+...++++ |.. ....|.|.++|.+ +++.|++++.+..++++.++..+++++........++++++++
T Consensus 126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhhhhhhHHHHHHHHHHhc
Confidence 1 122222211 111 2245889999874 2467999999999999999999999999999888888888765
No 48
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=98.26 E-value=9.4e-06 Score=73.34 Aligned_cols=118 Identities=8% Similarity=-0.046 Sum_probs=81.7
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec--Ce-EEEEEEEEEe---cCCC-
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FL-VESYVSHVEL---NRPK- 169 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~--g~-~e~ytSrv~~---d~~~- 169 (256)
+..+..+..+++|++++|+|+.|++.+++|.+.|.+++++++-++... .-..+... ++ ...++.+..+ .+++
T Consensus 77 ~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg~ 155 (236)
T cd08914 77 VLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDGN 155 (236)
T ss_pred cEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCCC
Confidence 568888889999999999999999999999999999999998654332 22233332 22 3456555443 2122
Q ss_pred --eEEEEecCC-------cc--ccc-eeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHH
Q 025224 170 --FVKTTASDS-------SL--FDH-LINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAA 218 (256)
Q Consensus 170 --rI~~~~~~~-------Gp--Fk~-L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~ 218 (256)
.|....+.+ |. ... +.|. .++|++ +++|+|+|....++ +-|+.++.
T Consensus 156 ~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~-~~~~~VtY~~~~dP-g~lp~~~~ 213 (236)
T cd08914 156 TYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAID-SNSCTVSYFNQISA-SILPYFAG 213 (236)
T ss_pred EEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcC-CCcEEEEEEEEcCC-ccchheEE
Confidence 233444332 11 133 5675 999984 68999999999998 66666554
No 49
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=98.26 E-value=0.00026 Score=60.61 Aligned_cols=141 Identities=13% Similarity=0.168 Sum_probs=100.7
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec---Ce-EEEEEEEEEe--cCCC
Q 025224 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK---FL-VESYVSHVEL--NRPK 169 (256)
Q Consensus 96 ~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~---g~-~e~ytSrv~~--d~~~ 169 (256)
....+.....+++++++++..+.|... +|-+.|.++++++.-+++....-...... ++ ...|.....+ +.++
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~ 121 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG 121 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred cceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence 467788999999999988888888777 99999999999998544432222222221 12 3444432222 2334
Q ss_pred e--EEEEecCCccc----------cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 F--VKTTASDSSLF----------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 170 r--I~~~~~~~GpF----------k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
. |..++++...+ +.+.+.|.|+|.+ ++.|+|++....+++..++.++++.+.+.....+++.+.+++
T Consensus 122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~-~~~~~vt~~~~~D~~G~iP~~~~n~~~~~~~~~~~~~~~~~~ 200 (206)
T PF01852_consen 122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG-DGRTRVTYVSQVDPKGWIPSWLVNMVVKSQPPNFLKNLRKAL 200 (206)
T ss_dssp EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET-TCEEEEEEEEEEESSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc-CCCceEEEEEEECCCCCChHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 33333322111 2446889999994 577999999999999999999999999999999999998888
Q ss_pred HH
Q 025224 238 RL 239 (256)
Q Consensus 238 ~~ 239 (256)
++
T Consensus 201 ~~ 202 (206)
T PF01852_consen 201 KK 202 (206)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 50
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.25 E-value=7.7e-05 Score=59.76 Aligned_cols=131 Identities=9% Similarity=0.057 Sum_probs=76.2
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeE-EEEE-EEEEecCCCeEEEEec
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLV-ESYV-SHVELNRPKFVKTTAS 176 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~-e~yt-Srv~~d~~~rI~~~~~ 176 (256)
+++.++.|++|+++||+++.|.+.|++|.|... .. .+.+. + ....+ .+.+.. ..+. .-..+++++++.++..
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~-~~~~~-~-~~g~~--~~~~~~~~~~~~~i~~~~p~~~l~~~~~ 75 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GP-FVVGE-G-ATGEI--TYPGYEHGVFPVTVVEVDPPRRFSFRWH 75 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CC-cccCC-c-ceeEE--ecCCCCccceEEEEEEeCCCcEEEEEec
Confidence 578899999999999999999999999999753 10 11111 1 11122 222211 2333 3355677788887763
Q ss_pred CCc-----c---ccceeeEEEEeeCCCCCeeEEEEEEE-EEeCch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 177 DSS-----L---FDHLINIWEFNPGPSPGTCNLYFLVD-FKFHSP-LYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 177 ~~G-----p---Fk~L~G~W~f~p~~~~~~T~V~f~ld-Fef~~p-Ll~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
... + -......|+|++. +++|+|++.+. |.-... ..... .......-..+++.+++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~gT~vt~~~~~~~~~~~~~~~~~-~~~~~~gw~~~l~~L~~~le 144 (145)
T cd08898 76 PPAIDPGEDYSAEPSTLVEFTLEPI--AGGTLLTVTESGFDALPAERRAEA-YRMNEGGWDEQLENLVAYVE 144 (145)
T ss_pred CCCcccccccCCCCceEEEEEEEec--CCcEEEEEEEcCCCCCChHHHHHH-HHhhhhhHHHHHHHHHHHhc
Confidence 211 0 1124578999997 37799999986 332110 11111 12344445566666666553
No 51
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.22 E-value=2.6e-05 Score=65.03 Aligned_cols=126 Identities=7% Similarity=-0.067 Sum_probs=80.0
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEE-EEEEecCCCeEEEEec
Q 025224 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKTTAS 176 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~yt-Srv~~d~~~rI~~~~~ 176 (256)
..+..+++|++|+++||+++.|.+.|++|.|.+ . .+...++.+.. ..+-.+ ...+. .-..+++++++.++..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-~---~~~~~G~~~~~--~~~~~~-~~~~~~~v~e~~p~~~l~~~~~ 83 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG-T---GDLRVGGRVEF--VMDDEE-GPNATGTILACEPPRLLAFTWG 83 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-C---CCcccCceEEE--EecCCC-CCccceEEEEEcCCcEEEEEec
Confidence 579999999999999999999999999999932 1 22222232222 222111 11222 2345678888888775
Q ss_pred CCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 177 DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERCRL 239 (256)
Q Consensus 177 ~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~~ 239 (256)
. +. ......|+|++. +++|+|++..++....... ......-..+++.+++.+++
T Consensus 84 ~-~~-~~~~~~~~l~~~--~~gT~v~~~~~~~~~~~~~-----~~~~~GW~~~L~~Lk~~~e~ 137 (157)
T cd08899 84 E-GG-GESEVRFELAPE--GDGTRLTLTHRLLDERFGA-----GAVGAGWHLCLDVLEAALEG 137 (157)
T ss_pred C-CC-CCceEEEEEEEc--CCCEEEEEEEeccCchhhh-----hhhcccHHHHHHHHHHHHcC
Confidence 3 33 445678899987 3679999999886554222 22233345566666666654
No 52
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.14 E-value=0.00035 Score=56.70 Aligned_cols=131 Identities=10% Similarity=0.053 Sum_probs=79.4
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCC-CcceEEE--EEeCCCCeEEEEEEEeecCeEEE-EEEEEEecCCCeEEEEe
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVP-WCQRSEI--LKHNPDGSFDAELEIGFKFLVES-YVSHVELNRPKFVKTTA 175 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP-~c~~s~V--L~r~~dg~~~Ael~V~~~g~~e~-ytSrv~~d~~~rI~~~~ 175 (256)
+..++.|++|+++||+++.|-+.-.+|++ .+-.... .+...+|.+...+. +-.|.... .-.-..++|+++|.++.
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~d~~~GG~~~~~~~-~~~g~~~~~~g~v~e~~p~~~l~~t~ 80 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEFDLRPGGRWRFVMH-GPDGTDYPNRIVFLEIEPPERIVYDH 80 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEEEecCCCEEEEEEE-CCCCCEecceEEEEEEcCCCEEEEEe
Confidence 46688999999999999999999999874 2111111 12222343333222 11232212 22446678888998887
Q ss_pred cCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP-LYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 176 ~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p-Ll~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
...++ ...-.|+|+|. +++|+|++...| .++ ....++.......-..+++.+++.+
T Consensus 81 ~~~~~--~~~v~~~~~~~--~~gT~ltl~~~~--~~~~~~~~~~~~~~~~Gw~~~l~~L~~~l 137 (139)
T cd08894 81 GSGPP--RFRLTVTFEEQ--GGKTRLTWRQVF--PTAAERCEKIKFGAVEGNEQTLDRLAAYL 137 (139)
T ss_pred ccCCC--cEEEEEEEEEC--CCCEEEEEEEEc--CCHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 54321 23467999997 378999999864 333 2233445555566667777666554
No 53
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.01 E-value=0.001 Score=54.32 Aligned_cols=134 Identities=12% Similarity=0.066 Sum_probs=75.1
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCC---cceEEEEEeCCCCeEEEEEEEeecCeEEE-EEEEEEecCCCeEEEEe
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPW---CQRSEILKHNPDGSFDAELEIGFKFLVES-YVSHVELNRPKFVKTTA 175 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~---c~~s~VL~r~~dg~~~Ael~V~~~g~~e~-ytSrv~~d~~~rI~~~~ 175 (256)
+.-++.|++|+++||+++.|=+.+.+|++. .......+-..+|.+...+. +.+|.... +-.-..++|+++|.++.
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~-~~~g~~~~~~g~v~~i~p~~~l~~t~ 80 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLRPGGAFRTVMR-GPDGEEFPNPGCFLEVVPGERLVFTD 80 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEeecCcEEEEEEE-CCCCCEecceEEEEEEeCCCEEEEEE
Confidence 456789999999999999999999999863 21111222223343332222 22233222 33456778888888764
Q ss_pred c--CC-cccc--ceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 S--DS-SLFD--HLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 176 ~--~~-GpFk--~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
. ++ .+-. .....|+|++. +++|+|++...+ +.....+.....-+...-..+++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~~~--~~gT~Ltl~~~~-~~~~~~~~~~~~~~~~GW~~~l~~L~~~l 144 (146)
T cd08896 81 ALTPGWRPAEKPFMTAIITFEDE--GGGTRYTARARH-WTEADRKQHEEMGFHDGWGTAADQLAALA 144 (146)
T ss_pred eecCCcCCCCCCcEEEEEEEEec--CCcEEEEEEEEe-CCHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 2 11 1111 14568999997 478999987543 22112222222223344455555555443
No 54
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.81 E-value=0.0028 Score=51.78 Aligned_cols=131 Identities=12% Similarity=0.150 Sum_probs=76.2
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc-eEEE--EEeCCCCeEEEEEEEee------cCeEEEE-EEEEEecCCC
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ-RSEI--LKHNPDGSFDAELEIGF------KFLVESY-VSHVELNRPK 169 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~-~s~V--L~r~~dg~~~Ael~V~~------~g~~e~y-tSrv~~d~~~ 169 (256)
+..++.|++|+++||+++.|-+...+|.++-. ...+ .+...++.+...+...- .+..... -.-..+++++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~ 81 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE 81 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence 56788999999999999999999999988532 2222 33333443333332211 1111122 2346677888
Q ss_pred eEEEEec-CCccc-cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 FVKTTAS-DSSLF-DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 170 rI~~~~~-~~GpF-k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
+|.++.. .++.. ....-.|+|++. +++|+|++.+.. +.... .......--..+++.+++.+
T Consensus 82 ~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~T~lt~~~~~-~~~~~----~~~~~~~GW~~~l~~L~~~l 144 (146)
T cd08895 82 RIVYTDVFDDPSLSGEMTMTWTLSPV--SGGTDVTIVQSG-IPDGI----PPEDCELGWQESLANLAALV 144 (146)
T ss_pred EEEEEEEecCCCCCceEEEEEEEEec--CCCEEEEEEEeC-CCchh----hhhHHHHHHHHHHHHHHHHh
Confidence 8888753 11111 234678999998 378999999863 22221 12233334455555555443
No 55
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.65 E-value=0.007 Score=49.15 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=65.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCC-----cceEEEEEeCCCCeEEEEEEEeecCeEEEEE-EEEEecCCCeEEE
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPW-----CQRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKT 173 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~-----c~~s~VL~r~~dg~~~Ael~V~~~g~~e~yt-Srv~~d~~~rI~~ 173 (256)
+.-++.+++|+++||+.+.|=+...+|+.. |....+--+ .++.+...+. ..++...... .-..+++|++|.+
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~-~Gg~~~~~~~-~~~g~~~~~~g~~~~~~p~~~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFR-VGGREVSRGG-PKGGPEITVEARYHDIVPDERIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecC-CCCEEEEEEE-CCCCCEEeeeEEEEEecCCceEEE
Confidence 456788999999999999999999999854 232222222 3343333322 1233322323 3456788888876
Q ss_pred Eec---CCccccceeeEEEEeeCCCCCeeEEEEEEEE
Q 025224 174 TAS---DSSLFDHLINIWEFNPGPSPGTCNLYFLVDF 207 (256)
Q Consensus 174 ~~~---~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldF 207 (256)
+.. .+++-....-.|+|.+. +++|+|++.+..
T Consensus 80 t~~~~~~~~~~~~s~v~~~l~~~--~~gT~l~~~~~~ 114 (143)
T cd08900 80 TYTMHIGGTLLSASLATVEFAPE--GGGTRLTLTEQG 114 (143)
T ss_pred EEeeccCCccccceEEEEEEEEC--CCCEEEEEEEEE
Confidence 642 11222233467899987 378999999875
No 56
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.60 E-value=0.016 Score=47.34 Aligned_cols=132 Identities=11% Similarity=-0.050 Sum_probs=76.4
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc-eE--EEEEeCCCCeEEEEEEEeecCeEEE-EEEEEEecCCCeEEEEe
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ-RS--EILKHNPDGSFDAELEIGFKFLVES-YVSHVELNRPKFVKTTA 175 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~-~s--~VL~r~~dg~~~Ael~V~~~g~~e~-ytSrv~~d~~~rI~~~~ 175 (256)
+.-++.+++|+++||+...|=+.+.+|...-- .. ...+-..+|.+...+.- .+|-... .-.-..++|+++|.++.
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~d~r~GG~~~~~~~~-~~g~~~~~~g~~~ei~p~~~l~~t~ 80 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCECDIRVGGSYRYVHRA-PDGEEMGFHGVYHEVTPPERIVQTE 80 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEEeccCCCEEEEEEEC-CCCCEecceEEEEEEcCCCEEEEEe
Confidence 56788999999999999999999999986421 11 11222234443333221 1222112 22345678888887764
Q ss_pred c-CCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhH-HHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 S-DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLY-RQAASMFFKEVVSRLVGSFSER 236 (256)
Q Consensus 176 ~-~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl-~~l~~~~~~~v~~~mv~AF~kR 236 (256)
. ++.+-....-+|+|.+. +++|+|++...| .+.-. +..........-..+++.+++.
T Consensus 81 ~~~~~~~~~s~v~~~l~~~--~~gT~l~l~~~~--~~~~~~~~~~~~~~~~Gw~~~l~~L~~~ 139 (142)
T cd07826 81 EFEGLPDGVALETVTFTEL--GGRTRLTATSRY--PSKEARDGVLASGMEEGMEESYDRLDEL 139 (142)
T ss_pred EecCCCCCceEEEEEEEEC--CCCEEEEEEEEe--CCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3 21222334668999997 378999987654 44322 2233334444445555555443
No 57
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.57 E-value=0.0054 Score=54.41 Aligned_cols=131 Identities=7% Similarity=-0.001 Sum_probs=88.1
Q ss_pred ccccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEe-ecCe-EEEEEEEEEe--c-CCC
Q 025224 95 VLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIG-FKFL-VESYVSHVEL--N-RPK 169 (256)
Q Consensus 95 ~~m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~-~~g~-~e~ytSrv~~--d-~~~ 169 (256)
++++....+..|+++|++|...|.+ ..++|-..|.+++++++-++......-.+. ..++ ...|.....+ + +..
T Consensus 49 ~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 49 NPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred CceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCC
Confidence 4678899999999999999888866 799999999999999986542211111111 1122 3445554444 1 222
Q ss_pred --eEEEEecCC--ccc------cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHH
Q 025224 170 --FVKTTASDS--SLF------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSR 228 (256)
Q Consensus 170 --rI~~~~~~~--GpF------k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~ 228 (256)
.|...++++ .|. ..+.|.|.++|.+ ++.|+|++....++++.+++++.+.+-.-.+..
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~-~g~trvt~i~~vDpkG~~P~W~~n~~g~~~~~~ 194 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCG-SGKSRLTHICRVDLKGHSPEWYNKGFGHLCAAE 194 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECC-CCCEEEEEEEEecCCCCChHHHHHhHHHHHHHH
Confidence 223333221 111 2357889999994 578999999999999999999887755544443
No 58
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.52 E-value=0.007 Score=47.01 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEE-EEEecCCCeEEEEecCC--ccccc
Q 025224 107 GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVS-HVELNRPKFVKTTASDS--SLFDH 183 (256)
Q Consensus 107 ~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytS-rv~~d~~~rI~~~~~~~--GpFk~ 183 (256)
+||+++||+++.|-+.+.+| +-......+...++.+. + ....+....+.. -..+.++++|.++.... .+...
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W--~~~~~~~~~~~~Gg~~~--~-~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~ 75 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW--FTTSEAEMDFRPGGSFR--F-MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPE 75 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH--SEEEEEEEECSTTEEEE--E-EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEE
T ss_pred CcCHHHHHHHHCCHhHHhhc--cCCCcceeeeecCCEEE--E-EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCc
Confidence 58999999999999999999 32222222323334332 2 234444444443 45667888888875321 22456
Q ss_pred eeeEEEEeeCCCCCeeEEEEEEEE
Q 025224 184 LINIWEFNPGPSPGTCNLYFLVDF 207 (256)
Q Consensus 184 L~G~W~f~p~~~~~~T~V~f~ldF 207 (256)
....|+|.+. +++|+|++.++-
T Consensus 76 ~~v~~~~~~~--~~~T~l~~~~~~ 97 (124)
T PF08327_consen 76 SRVTFEFEEE--GGGTRLTLTHSG 97 (124)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEE
T ss_pred eEEEEEEEEc--CCcEEEEEEEEc
Confidence 7889999996 489999999943
No 59
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.39 E-value=0.01 Score=48.59 Aligned_cols=102 Identities=11% Similarity=0.020 Sum_probs=62.1
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc-------eEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEE
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ-------RSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVK 172 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~-------~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~ 172 (256)
++.++.|+||+++||+.+.| ...+|++.-. ....++-..+|.+. . ..-+|-...+-.-..++|+++|.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~--~-~~~~g~~~~~g~v~~v~p~~~l~ 76 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWY--E-IGEDGTECEWGTVLAWEPPSRLV 76 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEE--E-ecCCCcEeceEEEEEEcCCCEEE
Confidence 57899999999999999999 4667765311 11222222334322 1 12123322344556778888887
Q ss_pred EEecCCccc-----cceeeEEEEeeCCCCCeeEEEEEEEE
Q 025224 173 TTASDSSLF-----DHLINIWEFNPGPSPGTCNLYFLVDF 207 (256)
Q Consensus 173 ~~~~~~GpF-----k~L~G~W~f~p~~~~~~T~V~f~ldF 207 (256)
++......+ ....-+|+|++.+ +++|+|++....
T Consensus 77 ~tw~~~~~~~~~~~~~t~vt~~l~~~~-~~gT~ltl~~~~ 115 (149)
T cd08891 77 FTWQINADWRPDPDKASEVEVRFEAVG-AEGTRVELEHRG 115 (149)
T ss_pred EEeccCCCcCcCCCCceEEEEEEEECC-CCCeEEEEEEec
Confidence 765311111 1346789999972 278999999875
No 60
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.34 E-value=0.013 Score=47.12 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=62.6
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCc-----ceEEEEEeCCCCeEEEEEEEeecCeEEEEE-EEEEecCCCeEEE
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWC-----QRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKT 173 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c-----~~s~VL~r~~dg~~~Ael~V~~~g~~e~yt-Srv~~d~~~rI~~ 173 (256)
+..++.+++|+++||+++.|=+.+.+|++.. .... .+...+|.+...+.-.-+.....+. .-..++|+++|.+
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~-~d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~l~~ 80 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAE-NDLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKLIEY 80 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceee-ecCCcCCEEEEEEEcCCCCcccccceEEEEECCCCEEEE
Confidence 5678999999999999999999999996542 2222 2222334333333211111111112 3346788889998
Q ss_pred EecCCccccceeeEEEEeeCCCCCeeEEEEEE
Q 025224 174 TASDSSLFDHLINIWEFNPGPSPGTCNLYFLV 205 (256)
Q Consensus 174 ~~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~l 205 (256)
+..+ + ...+|+|++. +++|+|++..
T Consensus 81 ~~~~-~----~~v~~~l~~~--~~gT~l~l~~ 105 (133)
T cd08897 81 TMED-G----REVEVEFTEE--GDGTKVVETF 105 (133)
T ss_pred EcCC-C----CEEEEEEEEC--CCCEEEEEEE
Confidence 8643 2 3578999997 3789999863
No 61
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=97.20 E-value=0.026 Score=49.97 Aligned_cols=135 Identities=14% Similarity=0.162 Sum_probs=88.5
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEe--e-cC-e-EEEEEEEEEe---cCCC
Q 025224 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIG--F-KF-L-VESYVSHVEL---NRPK 169 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~--~-~g-~-~e~ytSrv~~---d~~~ 169 (256)
+.+..+.+|+++++++|+++.|.+.=.+|=+-|.+.+++++=++... .-..+. + ++ + ...|...+.+ +...
T Consensus 46 kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~-I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~ 124 (204)
T cd08904 46 NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTF-ICHTITQSFAMGSISPRDFVDLVHIKRYEGNM 124 (204)
T ss_pred eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcE-EEEEecccccCCcccCceEEEEEEEEEeCCCE
Confidence 78999999999999999999999999999999999999998654332 222222 1 12 2 2334443332 2211
Q ss_pred eEE-EEecCC-------ccc--cceeeEEEEeeCCC-CCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHH
Q 025224 170 FVK-TTASDS-------SLF--DHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSF 233 (256)
Q Consensus 170 rI~-~~~~~~-------GpF--k~L~G~W~f~p~~~-~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF 233 (256)
.|. ..++++ |-. ...-|.|-+.|+++ ++.|++++.+-.+++..|++.+++.++...+-..+..+
T Consensus 125 ~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~~~~~~~~f~~~~ 199 (204)
T cd08904 125 NIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKTMPTNLVNLILDA 199 (204)
T ss_pred EEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHHhHHHHHHHHHHH
Confidence 222 122111 111 11137799999852 24799999999999999999999886655544444433
No 62
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.05 E-value=0.018 Score=46.52 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=63.5
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecCCc
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSS 179 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~~G 179 (256)
++.++.|++|+++||+.+.|-+...+|.+.....+ -..++.+...... +++ .....-..++|+++|.++....+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~---~~~Gg~~~~~~~~-~~~--~~~g~~~~~~p~~~l~~~w~~~~ 75 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGR---LEEGKTVTWDWEM-YGA--SVPVNVLEIEPNKRIVIEWGDPG 75 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCcc---ccCCCEEEEEEEc-cCC--ceEEEEEEEcCCCEEEEEecCCC
Confidence 57789999999999999999999999765432222 1123332222221 122 11123356688888888764323
Q ss_pred cccceeeEEEEeeCCCCCeeEEEEEEE
Q 025224 180 LFDHLINIWEFNPGPSPGTCNLYFLVD 206 (256)
Q Consensus 180 pFk~L~G~W~f~p~~~~~~T~V~f~ld 206 (256)
+ ...-.|+|++.+ +++|+|++...
T Consensus 76 ~--~s~v~~~l~~~~-~ggT~ltl~~~ 99 (136)
T cd08901 76 E--PTTVEWTFEELD-DGRTFVTITES 99 (136)
T ss_pred C--CEEEEEEEEECC-CCcEEEEEEEC
Confidence 2 245689999973 37899999975
No 63
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=96.96 E-value=0.13 Score=43.20 Aligned_cols=133 Identities=10% Similarity=0.117 Sum_probs=87.7
Q ss_pred cEEEEEEEEcCCHHHHHHHHH-chhcccCCCCCcc-eEEEEEeCCCCe-EEEEEEEeecCeEEEEEEEEEec-CCC-eEE
Q 025224 98 KVYEERRVLGYSPEQLFDVVA-AVDLYHGFVPWCQ-RSEILKHNPDGS-FDAELEIGFKFLVESYVSHVELN-RPK-FVK 172 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVa-DVe~YPeFlP~c~-~s~VL~r~~dg~-~~Ael~V~~~g~~e~ytSrv~~d-~~~-rI~ 172 (256)
-.++.+..+++||+++|++.. .-...|+-+|..- ++++++-+++.. ..-.|+..-++-...+..+++.. .++ .+.
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~ 83 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTIT 83 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEE
Confidence 357788889999999999999 5566788887664 556666554311 34566666666666777887764 443 788
Q ss_pred EEecCCcc---ccceeeEEEEeeCCCCCeeEEEEEEEEEeCch---hHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 173 TTASDSSL---FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP---LYRQAASMFFKEVVSRLVGSFSER 236 (256)
Q Consensus 173 ~~~~~~Gp---Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~~p---Ll~~l~~~~~~~v~~~mv~AF~kR 236 (256)
++..++++ ++.+...=++.|.+ +++|.+.++++|+..+. .+...++. +..|.++.++.
T Consensus 84 y~viEGd~l~~~~~~~~~~~~~~~~-~g~~v~k~t~~Ye~~~~~~~~p~~~~~~-----~~~~~K~ieay 147 (151)
T PF00407_consen 84 YTVIEGDVLGDYKSFKSTIQKIPKG-DGGCVVKWTIEYEKKGEDVPPPEKYLDF-----AVGMFKAIEAY 147 (151)
T ss_dssp EEEEEETTGTTTEEEEEEEEEEEET-TSCEEEEEEEEEEESSTSCHHHHHHHHH-----HHHHHHHHHHH
T ss_pred EEEEeccccccEEEEEEEEEecCCC-CCceEEEEEEEEEecCCCCCCcHHHHHH-----HHHHHHHHHHH
Confidence 88877553 34556666666653 56799999999999754 34433333 45555555443
No 64
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=96.62 E-value=0.075 Score=47.20 Aligned_cols=139 Identities=10% Similarity=0.121 Sum_probs=91.7
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEE-EEEEeecC--e-EEEEEEEEEe-cCCC-eE
Q 025224 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDA-ELEIGFKF--L-VESYVSHVEL-NRPK-FV 171 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~A-el~V~~~g--~-~e~ytSrv~~-d~~~-rI 171 (256)
+.+..+.+|+..++++++.|.+...=.+|=|-+++.+|+++=+++.... ..+.+..+ + ...|+.-... ...+ .+
T Consensus 47 kl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~ 126 (202)
T cd08902 47 YLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLL 126 (202)
T ss_pred ceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeE
Confidence 6888999999999999999999998899999999999999866554332 34433332 2 2334432221 1222 22
Q ss_pred E----EEecCCcc-c----cceeeEEEEeeCCC-CCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 172 K----TTASDSSL-F----DHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 172 ~----~~~~~~Gp-F----k~L~G~W~f~p~~~-~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
. +....-.| | .+ =+.|-+.|+++ +..|.++..+..+++.-|++.+++.++...+-.....++++.
T Consensus 127 s~gvs~~~~~~ppg~VRgen~-p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 127 SCGVSIEYEEARPNFVRGFNH-PCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEeeecCCCCCCCeEeeccc-ccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHHhhHHHHHHHHHHHHhc
Confidence 1 11111011 1 11 15699999863 246778888889999999999998877776666666665553
No 65
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=96.27 E-value=0.36 Score=40.55 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=78.8
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCc----ceEEEEEeCCCCeEEEEEE--Eee----------cCeEEEEEEEE
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWC----QRSEILKHNPDGSFDAELE--IGF----------KFLVESYVSHV 163 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c----~~s~VL~r~~dg~~~Ael~--V~~----------~g~~e~ytSrv 163 (256)
++.+..+++|+++||+++.|=+-|.+=+... ..+..++.++++ +.+.+. +.. -+-...++-.-
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 3567889999999999999976655444333 223444555554 233332 222 11123444444
Q ss_pred EecC--CC--eEEEEecCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHH
Q 025224 164 ELNR--PK--FVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVG 231 (256)
Q Consensus 164 ~~d~--~~--rI~~~~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~ 231 (256)
+|.+ +. ...+...-.|.=-.+.|.-++.+. +++|+++++.+++.+.|+++..+..++...+.+.++
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P~~~~G~~~L~~~--~~gt~~~~~g~v~v~VPlvGgkiE~~v~~~~~~~~~ 149 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAPVSISGTMRLRPD--GGGTRLTVEGEVKVKVPLVGGKIEKAVAENLRKLLE 149 (159)
T ss_pred EEecCCCCeEEEEEEEEecCceEEEEEEEEEecC--CCCEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHH
Confidence 5532 22 222222222444578899999996 478999999999999999988766655555444443
No 66
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=96.04 E-value=0.23 Score=39.68 Aligned_cols=97 Identities=13% Similarity=0.013 Sum_probs=62.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEec-CC
Q 025224 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTAS-DS 178 (256)
Q Consensus 100 ~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~-~~ 178 (256)
++.++.+++|+++||+.+.|=+...+|+.. .. ..+-.+++.+. +. .+. ....-..++|+++|.++.. ++
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~--~~-~~d~~~GG~~~--~~---~g~--~~g~~~~i~p~~~l~~~w~~~~ 71 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRS--PA-KVDAKVGGKFS--LF---GGN--ITGEFVELVPGKKIVQKWRFKS 71 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCC--Cc-eecCCCCCEEE--Ee---CCc--eEEEEEEEcCCCEEEEEEEcCC
Confidence 567899999999999999998888888642 11 12333334322 11 121 1223466678888876543 11
Q ss_pred cc-ccceeeEEEEeeCCCCCeeEEEEEEEEE
Q 025224 179 SL-FDHLINIWEFNPGPSPGTCNLYFLVDFK 208 (256)
Q Consensus 179 Gp-Fk~L~G~W~f~p~~~~~~T~V~f~ldFe 208 (256)
.+ -....-.|+|++. +++|+|++...--
T Consensus 72 ~~~~~~s~v~~~l~~~--~~gT~ltl~~~g~ 100 (126)
T cd08892 72 WPEGHYSTVTLTFTEK--DDETELKLTQTGV 100 (126)
T ss_pred CCCCCcEEEEEEEEEC--CCCEEEEEEEECC
Confidence 12 1335678999997 3789999998644
No 67
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.47 Score=39.42 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=75.2
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEE-EEecCCCeEEEEe
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSH-VELNRPKFVKTTA 175 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSr-v~~d~~~rI~~~~ 175 (256)
-..+..+++|++|+++||+.+.|=+...+|+. -...+.--+.+.+ ....+....+.. ..+... ...+|+++|.++.
T Consensus 7 ~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~gg~-~~~~~~~~~g~~-~~~~~~~~~v~p~~rIv~tw 83 (149)
T COG3832 7 DRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTGGG-ERVRFRGPDGPV-HSFEGEYLEVVPPERIVFTW 83 (149)
T ss_pred CceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecCCc-eEEeeecCCCCe-eecceEEEEEcCCcEEEEEe
Confidence 35789999999999999999999999999998 2211111122222 222333332222 344444 4456778888766
Q ss_pred cC---CccccceeeEEEEeeCCCCCe-eEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 176 SD---SSLFDHLINIWEFNPGPSPGT-CNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSER 236 (256)
Q Consensus 176 ~~---~GpFk~L~G~W~f~p~~~~~~-T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~kR 236 (256)
.. ..++..-..+|+|.+...+++ +.+...+ +.+ .+--+...+..+..--..+++.+++-
T Consensus 84 ~~~~~~~~~~~~~v~~~l~~~~~g~~~~~~~~~~-~~~-~~~~~~~~~~~~~~Gw~~~~~~l~~~ 146 (149)
T COG3832 84 DFDEDGEPFLKSLVTITLTPEDDGGTTTLVRTSG-GGF-LEDEDQKLGMGMEEGWGQLLDNLKAL 146 (149)
T ss_pred ccCCCCCcccCceEEEEEEEecCCCcEEEEEEee-ccc-cchhHHHhCcchhhhHHHHHHHHHHh
Confidence 32 245555678899999632222 3333322 221 23334344443444455555555443
No 68
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=94.69 E-value=1.5 Score=36.97 Aligned_cols=125 Identities=12% Similarity=0.135 Sum_probs=81.5
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCe-EEEEEEEeecCe----EEEEEEEEEe---cCC
Q 025224 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGS-FDAELEIGFKFL----VESYVSHVEL---NRP 168 (256)
Q Consensus 97 m~~~~~s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~-~~Ael~V~~~g~----~e~ytSrv~~---d~~ 168 (256)
|-++....+|.+|.|.|++-=+-.+..-..-|..+ .|+..+ ++. --.++..+...+ ...|+++.+. |++
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrpd~lq~LTppw~--VV~p~g-~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRPDALQRLTPPWI--VVLPLG-SEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCccHHHhcCCCcE--EeccCC-CcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 55788888999999999999999999888888776 343332 221 112333333333 3589998776 444
Q ss_pred CeEEEEecCCccccceeeEEE----EeeCCCCCeeEEEEEEEEEeCch-hHHHHHHHHHHHHHHHH
Q 025224 169 KFVKTTASDSSLFDHLINIWE----FNPGPSPGTCNLYFLVDFKFHSP-LYRQAASMFFKEVVSRL 229 (256)
Q Consensus 169 ~rI~~~~~~~GpFk~L~G~W~----f~p~~~~~~T~V~f~ldFef~~p-Ll~~l~~~~~~~v~~~m 229 (256)
.+-.-.... |||..+ .|+ |.+. +|+|.+.=++.|++... +.+++......-+.+.|
T Consensus 78 ~~FtDv~i~-gPfp~~--~WrHtH~F~~e--gg~TvliD~Vsye~p~g~~~~~~g~~l~q~~l~~m 138 (153)
T COG4276 78 SRFTDVCIT-GPFPAL--NWRHTHNFVDE--GGGTVLIDSVSYELPAGTLTGMFGYRLTQLILDLM 138 (153)
T ss_pred ceeeeeeec-CCccce--eeEEEeeeecC--CCcEEEEeeEEeeccCcceechhhhhhHHHHHHHH
Confidence 444444544 999997 564 6665 47899999999998866 33444444433344443
No 69
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=94.50 E-value=0.44 Score=38.67 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=56.2
Q ss_pred EcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecCC--ccccc
Q 025224 106 LGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDS--SLFDH 183 (256)
Q Consensus 106 V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~~--GpFk~ 183 (256)
+++|+++||+.+.|=+...+|. .+... .++-..+|.+.. -.+.+.. .-+++++|++|.++..-. ++=..
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~-~~~~~-~~d~~~GG~f~~----~~~~~~G---~~~ev~pp~rlv~tw~~~~~~~~~~ 71 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLS-LGSPA-EMDAKVGGKFSL----FNGSVEG---EFTELEKPKKIVQKWRFRDWEEDVY 71 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHh-cCCCc-cccCCcCCEEEE----ecCceEE---EEEEEcCCCEEEEEEecCCCCCCCc
Confidence 4799999999999999888884 11111 223223343221 1122222 346678889888766321 12112
Q ss_pred eeeEEEEeeCCCCCeeEEEEEEE-E
Q 025224 184 LINIWEFNPGPSPGTCNLYFLVD-F 207 (256)
Q Consensus 184 L~G~W~f~p~~~~~~T~V~f~ld-F 207 (256)
..-+|+|++.+ +++|+|++.+. +
T Consensus 72 s~vt~~~~~~~-~g~T~lt~~~~g~ 95 (132)
T PTZ00220 72 SKVTIEFRAVE-EDHTELKLTQTGI 95 (132)
T ss_pred eEEEEEEEeCC-CCcEEEEEEEecC
Confidence 45789999963 46899999987 5
No 70
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=93.82 E-value=2.9 Score=37.90 Aligned_cols=138 Identities=15% Similarity=0.168 Sum_probs=88.5
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccC-CCCCcceEEEEEeCC-------CCe---EEEEEEEeec--CeEEEEEEEEEe
Q 025224 99 VYEERRVLGYSPEQLFDVVAAVDLYHG-FVPWCQRSEILKHNP-------DGS---FDAELEIGFK--FLVESYVSHVEL 165 (256)
Q Consensus 99 ~~~~s~~V~a~~eqVfdLVaDVe~YPe-FlP~c~~s~VL~r~~-------dg~---~~Ael~V~~~--g~~e~ytSrv~~ 165 (256)
--+++.+|...+..+-+++.|.++|.+ |=.-|.++++++.-. +|. +-+++.+=.. +-++-|..|+..
T Consensus 61 ASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRyc~ 140 (229)
T cd08875 61 ASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRYCK 140 (229)
T ss_pred EEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEEEE
Confidence 456777899999999999999999999 556788888876421 121 4455554332 336777777665
Q ss_pred cCCC--eEEEE-ecCCc---cc-------cceeeEEEEeeCCCCCeeEEEEEEEEEeCc----hhHHHHHHHHHHHHHHH
Q 025224 166 NRPK--FVKTT-ASDSS---LF-------DHLINIWEFNPGPSPGTCNLYFLVDFKFHS----PLYRQAASMFFKEVVSR 228 (256)
Q Consensus 166 d~~~--rI~~~-~~~~G---pF-------k~L~G~W~f~p~~~~~~T~V~f~ldFef~~----pLl~~l~~~~~~~v~~~ 228 (256)
.-++ .+.+. +.++. |. +.+-.-|-+++.+ +|.|+|++--+.|... .+|..++....---+.+
T Consensus 141 ~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~-nG~SkVtwVeH~e~d~~~~~~l~~~l~~sg~AfgA~r 219 (229)
T cd08875 141 QLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMP-NGYSKVTWVEHVEVDEKPVHLLYRYLVSSGLAFGATR 219 (229)
T ss_pred EeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECC-CCceEEEEEEEEeccCCcccccchhhhhhhHHHHHHH
Confidence 4333 32222 22321 22 2333457888885 4789999988888764 35666666666666666
Q ss_pred HHHHHHHHH
Q 025224 229 LVGSFSERC 237 (256)
Q Consensus 229 mv~AF~kRA 237 (256)
-+..+.+++
T Consensus 220 w~a~lqRqc 228 (229)
T cd08875 220 WVATLQRQC 228 (229)
T ss_pred HHHHHHHhc
Confidence 666665554
No 71
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=92.96 E-value=5 Score=33.86 Aligned_cols=118 Identities=23% Similarity=0.321 Sum_probs=66.0
Q ss_pred cCCHHHHHH-HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecCCcccccee
Q 025224 107 GYSPEQLFD-VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLI 185 (256)
Q Consensus 107 ~a~~eqVfd-LVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~~GpFk~L~ 185 (256)
..+.+|||. |+.-+++=..|+|+..+++|++++++ .+ .-++.|++. .+..++++.++.+|.+...+ |. .+.
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~-~~--~R~v~fg~~--~v~E~v~~~~~~~V~f~~~~-Gs--~lt 88 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDT-VL--TREVTFGGA--TVRERVTLYPPERVDFAQHD-GS--SLT 88 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SS-EE--EEEEEETTE--EEEEEEEEETTTEEEESSSB-EE--EEE
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCCC-eE--EEEEEECCc--EEEEEEEEeCCcEEEEEcCC-CC--EEE
Confidence 357788886 66777778889999999999999854 23 335556664 77889999999999995544 43 222
Q ss_pred eEEEEeeCCCCCeeEEEEEEEEEeCch----------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 186 NIWEFNPGPSPGTCNLYFLVDFKFHSP----------LYRQAASMFFKEVVSRLVGSFSERC 237 (256)
Q Consensus 186 G~W~f~p~~~~~~T~V~f~ldFef~~p----------Ll~~l~~~~~~~v~~~mv~AF~kRA 237 (256)
.. +... .++ .+.++..|+..-| -+........+.+...+|+...+.|
T Consensus 89 ~~--I~e~-~~g--~L~ltf~ye~~~p~~~~gs~e~~~~~~~~~~ay~~a~~~Ti~~iRe~~ 145 (149)
T PF08982_consen 89 NI--ISEP-EPG--DLFLTFTYEWRLPGVEPGSPEAKAYQEFYKSAYKEADIDTIRVIRELA 145 (149)
T ss_dssp EE--EEEE-ETT--EEEEEEEEEEE----S---------BHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EE--EecC-CCC--cEEEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2222 123 5555555555533 1223344455555555555555444
No 72
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=92.13 E-value=2.3 Score=37.66 Aligned_cols=111 Identities=12% Similarity=0.123 Sum_probs=75.2
Q ss_pred CCCCCcc--eEEEEEeCCCCe----EEEEEEEeecC-e-EEEEEEEEE-e-cCC--C-eEEEEe--cC-Ccc--------
Q 025224 125 GFVPWCQ--RSEILKHNPDGS----FDAELEIGFKF-L-VESYVSHVE-L-NRP--K-FVKTTA--SD-SSL-------- 180 (256)
Q Consensus 125 eFlP~c~--~s~VL~r~~dg~----~~Ael~V~~~g-~-~e~ytSrv~-~-d~~--~-rI~~~~--~~-~Gp-------- 180 (256)
+|+|.|. ++++++..+++. ....+...+.. + ...|++... . +.+ + .|.+.. .. .-|
T Consensus 67 ~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr 146 (208)
T cd08864 67 EYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVL 146 (208)
T ss_pred hchhhhccceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEE
Confidence 9999999 899999876443 34555666653 2 556766655 2 222 3 333332 11 111
Q ss_pred ccceee-EEEEeeCCCCCeeEEEEEE--EEEeCchhHHHHHHHHHHHHHHHHHHHHHH
Q 025224 181 FDHLIN-IWEFNPGPSPGTCNLYFLV--DFKFHSPLYRQAASMFFKEVVSRLVGSFSE 235 (256)
Q Consensus 181 Fk~L~G-~W~f~p~~~~~~T~V~f~l--dFef~~pLl~~l~~~~~~~v~~~mv~AF~k 235 (256)
-.+..| .|++.|.+.++.++|++.+ .-+.+.-++.++.+......+-+=+..|.+
T Consensus 147 ~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~p~aI~~Dv~~fl~ 204 (208)
T cd08864 147 GRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTIPKAIAKDVPLFLD 204 (208)
T ss_pred EEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccCchHHHHhHHHHHH
Confidence 245678 9999997323578899999 999999999999999888777766666654
No 73
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=90.33 E-value=13 Score=33.46 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=96.3
Q ss_pred ccEEEEEEE-EcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCC-CCeEEEEEEEeecC-e-EEEEE-EEEEecCC-C-
Q 025224 97 SKVYEERRV-LGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNP-DGSFDAELEIGFKF-L-VESYV-SHVELNRP-K- 169 (256)
Q Consensus 97 m~~~~~s~~-V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~-dg~~~Ael~V~~~g-~-~e~yt-Srv~~d~~-~- 169 (256)
+..|....+ =+++|+.++|+..|.|-=++|=-.....++++++. .|.....|...|.. + ...|+ .|..++.. +
T Consensus 52 ~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~ 131 (219)
T KOG2761|consen 52 LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKD 131 (219)
T ss_pred CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCce
Confidence 456665555 45999999999999999999999999999999986 24457788877773 3 34455 44555433 2
Q ss_pred e-EEEEecCC---ccc------cceeeEEEEe-eC--CCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHHHHH
Q 025224 170 F-VKTTASDS---SLF------DHLINIWEFN-PG--PSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGSFSE 235 (256)
Q Consensus 170 r-I~~~~~~~---GpF------k~L~G~W~f~-p~--~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~AF~k 235 (256)
. |.-..+++ ++- ......|.+. +. +++++|.+.+..--..+.+++..+++..+...+...++-..+
T Consensus 132 ~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~iP~~~v~~~~~~gmp~~vkKm~~ 210 (219)
T KOG2761|consen 132 YYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGGIPKWVVKLAVRKGMPGAVKKMEK 210 (219)
T ss_pred EEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCCCCCcHHHHHHHHHhcChHHHHHHHH
Confidence 2 22222111 111 2345778888 21 124789999999889999999999999888887666655543
No 74
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=89.66 E-value=11 Score=31.62 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=50.8
Q ss_pred CCHHHHHH-HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEEEecC
Q 025224 108 YSPEQLFD-VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASD 177 (256)
Q Consensus 108 a~~eqVfd-LVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~~~~~ 177 (256)
.+.+|+|. |+.-++.=..|+|++.+++|++++++ .+. =++.|++ .....++++.++.+|.+.+.+
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~-~l~--Rel~f~~--~~v~e~vt~~~~~~v~f~~~~ 82 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT-VLE--RELTFGP--AKIRETVTLEPPSRVHFLQAD 82 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCC-EEE--EEEEECC--ceEEEEEEecCCcEEEEEecC
Confidence 57788885 77888888899999999999999863 332 2555665 355578999999999998865
No 75
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=88.71 E-value=11 Score=30.31 Aligned_cols=105 Identities=17% Similarity=0.199 Sum_probs=58.4
Q ss_pred EEEEEcCCHHHHHHHHH-----chhcccCCCCCc---ceEEEEEeCCCCeEEEEEEEeecCeEEEEEEEEEecCCCeEEE
Q 025224 102 ERRVLGYSPEQLFDVVA-----AVDLYHGFVPWC---QRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKT 173 (256)
Q Consensus 102 ~s~~V~a~~eqVfdLVa-----DVe~YPeFlP~c---~~s~VL~r~~dg~~~Ael~V~~~g~~e~ytSrv~~d~~~rI~~ 173 (256)
.++.+++|++++|+.+. |+.....=-+.. ..-+..+.-+++. .+.++ ...+.+|..-.+
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L~G~~Y~K~~~~~~-~~~v~------------It~~~~~~~Y~~ 69 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQLKGFSYQKKFKNKR-EAKVK------------ITEYEPNKRYAA 69 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhcCCcEEEEEcCCCC-EEEEE------------EEEEcCCCEEEE
Confidence 35679999999998765 454433222211 1111222211111 22222 224556664333
Q ss_pred EecCCccccceeeEEEEeeCCCCCeeEEEEEEEEEeCc---hhHHHHHHHHH
Q 025224 174 TASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS---PLYRQAASMFF 222 (256)
Q Consensus 174 ~~~~~GpFk~L~G~W~f~p~~~~~~T~V~f~ldFef~~---pLl~~l~~~~~ 222 (256)
... .+.....-.|+++|++ ++.|+|+|+=+++-.+ .+..++++.++
T Consensus 70 ~~~--s~~~~~~i~Y~i~~~~-~~~~~v~y~E~~~~~~~~~~~n~~l~~~~~ 118 (120)
T PF11687_consen 70 TFS--SSRGTFTISYEIEPLD-DGSIEVTYEEEYESKGFFQKLNNKLMGFFY 118 (120)
T ss_pred EEE--ecCCCEEEEEEEEECC-CCcEEEEEEEEEccCCHHHHHHHHHHHHhc
Confidence 331 2334568899999994 5779999999999554 45555555543
No 76
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=88.00 E-value=19 Score=32.15 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=80.9
Q ss_pred ccccEEEEEEEEcC-CHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEe-ecCe-EEEEEEEEEe--cCC-
Q 025224 95 VLSKVYEERRVLGY-SPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIG-FKFL-VESYVSHVEL--NRP- 168 (256)
Q Consensus 95 ~~m~~~~~s~~V~a-~~eqVfdLVaDVe~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~-~~g~-~e~ytSrv~~--d~~- 168 (256)
.+.+....+..|++ |++-+|++|.| =..|=+...+++++++=+++.-...-.+. ..+. ...|..-..+ +.+
T Consensus 49 ~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~ 125 (205)
T cd08907 49 HPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPR 125 (205)
T ss_pred CceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCCceEEEEEEEccCCCC
Confidence 46678888888885 55667899999 55666677777777664322112222221 1222 4455555545 112
Q ss_pred -CeEEEE-ecCC--ccc------cceeeEEEEeeCCCCCeeEEEEEEEEEeCchhHHHHHHHHHHHHHHHHHHH
Q 025224 169 -KFVKTT-ASDS--SLF------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQAASMFFKEVVSRLVGS 232 (256)
Q Consensus 169 -~rI~~~-~~~~--GpF------k~L~G~W~f~p~~~~~~T~V~f~ldFef~~pLl~~l~~~~~~~v~~~mv~A 232 (256)
..|.+. ++++ .|+ ..+...+-++|. ++++|+|++.-..+++..++.+. ++++..++..-+..
T Consensus 126 g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~-g~g~s~ltyi~rvD~rG~~P~Wy-nk~~g~~~a~~l~~ 197 (205)
T cd08907 126 GGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPC-GMGRSRLTHICRADLRGRSPDWY-NKVFGHLCAMEVAR 197 (205)
T ss_pred CCEEEEEecccCCcCCCCCCeEEEEEeccEEEEEC-CCCCeEEEEEEEeCCCCCCcHHH-HHhHHHHHHHHHHH
Confidence 222222 2111 222 224556778898 46899999999999999999999 88887776554433
No 77
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=80.73 E-value=36 Score=35.74 Aligned_cols=119 Identities=9% Similarity=0.088 Sum_probs=71.6
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchh-cccCCCCCcceEEEEEeCCCCeEEE--EEEEee-cCe--EEEEEEEEEecC--CC
Q 025224 98 KVYEERRVLGYSPEQLFDVVAAVD-LYHGFVPWCQRSEILKHNPDGSFDA--ELEIGF-KFL--VESYVSHVELNR--PK 169 (256)
Q Consensus 98 ~~~~~s~~V~a~~eqVfdLVaDVe-~YPeFlP~c~~s~VL~r~~dg~~~A--el~V~~-~g~--~e~ytSrv~~d~--~~ 169 (256)
+.+...-+|+++|++||++|.+++ .=.+|=.-+.+.+|+++-++..... .++-++ .++ ...|.-...+.+ +.
T Consensus 227 ~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDG 306 (719)
T PLN00188 227 RAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDG 306 (719)
T ss_pred ceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCC
Confidence 678888999999999999999888 5557888999999999865443222 222222 111 222322222211 11
Q ss_pred -e-EEEEecCC-------cccc--ceeeEEEEeeCCC---CCeeEEEEEEEEEeCchhHHH
Q 025224 170 -F-VKTTASDS-------SLFD--HLINIWEFNPGPS---PGTCNLYFLVDFKFHSPLYRQ 216 (256)
Q Consensus 170 -r-I~~~~~~~-------GpFk--~L~G~W~f~p~~~---~~~T~V~f~ldFef~~pLl~~ 216 (256)
. |...++++ |-.+ -.-|.|.+.|++. ...|.|...+..+++.-+.+.
T Consensus 307 sYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkGW~~~y 367 (719)
T PLN00188 307 SYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKGWGVGY 367 (719)
T ss_pred cEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCcccccc
Confidence 2 22222111 1111 0137899999742 247999999999999755433
No 78
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=45.56 E-value=40 Score=25.97 Aligned_cols=31 Identities=3% Similarity=-0.144 Sum_probs=27.3
Q ss_pred EeCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025224 208 KFHSPLYRQAASMFFKEVVSRLVGSFSERCR 238 (256)
Q Consensus 208 ef~~pLl~~l~~~~~~~v~~~mv~AF~kRA~ 238 (256)
.+..++++.+++..+++.+.+.++.|++.||
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~l~~lk~~aE 138 (139)
T cd07817 108 GAEGAAVAGLLGGEPERQLREDLRRFKQLVE 138 (139)
T ss_pred chhhhhHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence 4456788999999999999999999999987
No 79
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=31.30 E-value=4.9e+02 Score=25.66 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=70.6
Q ss_pred EEEEcCCHHHHHHHHHchhcccCCCCCcceEEEE-EeCCCCeEEEEEE-EeecCeEEE---EEEEEEecCCCe----EEE
Q 025224 103 RRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEIL-KHNPDGSFDAELE-IGFKFLVES---YVSHVELNRPKF----VKT 173 (256)
Q Consensus 103 s~~V~a~~eqVfdLVaDVe~YPeFlP~c~~s~VL-~r~~dg~~~Ael~-V~~~g~~e~---ytSrv~~d~~~r----I~~ 173 (256)
.+.+||.-+.+.+=+.|+.+-.-|.+..+..... +|..+-.+..+.+ ...+++... |-...++.+|-. |..
T Consensus 222 ~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l 301 (394)
T PLN00095 222 IADIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDAVPQSATFKPACVIASTIAL 301 (394)
T ss_pred EEeccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeecccCCcceeEcCceeeeeeecc
Confidence 4679999999999999999975566644432111 2211101111111 111222222 334566777753 333
Q ss_pred EecCCccc---cceeeEEEEeeCCCCCeeEEEEEEEEEeCc-hh-HHHHHHHHHHHHHHHHHH
Q 025224 174 TASDSSLF---DHLINIWEFNPGPSPGTCNLYFLVDFKFHS-PL-YRQAASMFFKEVVSRLVG 231 (256)
Q Consensus 174 ~~~~~GpF---k~L~G~W~f~p~~~~~~T~V~f~ldFef~~-pL-l~~l~~~~~~~v~~~mv~ 231 (256)
.+..++.+ +++..-=-.-|. ++|.|++-|.+.++|.. |- .+.+.+.+.++++.++|.
T Consensus 302 ~~~~g~~~~~~~~l~qlhvclP~-~~G~tRll~R~~~dF~~~~~~~~~~~~~~w~~~a~~vl~ 363 (394)
T PLN00095 302 EDGPGGGDGTDMNVEQLHVCLPA-KPGLCRLLFRLAFDFVAVPEGAQAAAGDVWANLAMMVLK 363 (394)
T ss_pred cccCCCCccccceeeeEEEEEec-CCCceEEEEeecccccccHHHhHhchHHHHHHHHHHHHH
Confidence 32222322 232222223455 47899999999999985 53 345667777777777765
No 80
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=26.61 E-value=81 Score=24.46 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=19.0
Q ss_pred ccceeeEEEEeeCCCCCeeEEEEEEEEE
Q 025224 181 FDHLINIWEFNPGPSPGTCNLYFLVDFK 208 (256)
Q Consensus 181 Fk~L~G~W~f~p~~~~~~T~V~f~ldFe 208 (256)
...|.|.|++... ...|+|++..+=-
T Consensus 9 ~~~l~G~W~l~~~--~~~C~v~L~~~~~ 34 (99)
T PF02974_consen 9 PASLAGQWQLSDG--GKSCRVTLTTTPF 34 (99)
T ss_dssp HHCC-EEEEEETS--S-EEEEEEEEEEE
T ss_pred hHHceEeeEEecC--CCceEEEeCCCcC
Confidence 4678999999943 5899999998753
No 81
>PF12139 APS-reductase_C: Adenosine-5'-phosphosulfate reductase beta subunit; InterPro: IPR022738 This domain is found in bacteria and archaea and is typically between 112 to 142 amino acids in length. It is found in association with PF00037 from PFAM, and has a conserved FPIRTT sequence motif. The whole beta subunit has the enzymic properties of 1.8.99.2 from EC. ; PDB: 1JNZ_B 2FJE_D 2FJD_B 1JNR_D 2FJB_B 2FJA_B 3GYX_J.
Probab=20.84 E-value=2.9e+02 Score=21.33 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred hhcccCCCCCcceEEEEEeCCCCeEEEEEEEeec-CeEEEEEEEEEecCCCeE
Q 025224 120 VDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYVSHVELNRPKFV 171 (256)
Q Consensus 120 Ve~YPeFlP~c~~s~VL~r~~dg~~~Ael~V~~~-g~~e~ytSrv~~d~~~rI 171 (256)
|..|.+|+|--.+++++...++ .-|+|.|. |...+|..-++-.++..|
T Consensus 1 vRgYADFvPlG~sv~plR~~~~----ImWtikFRnG~~KrFkfPIRTTpeGs~ 49 (83)
T PF12139_consen 1 VRGYADFVPLGGSVRPLRGTES----IMWTIKFRNGTVKRFKFPIRTTPEGSI 49 (83)
T ss_dssp E---TTTS-TT-EEEEEE-SSE----EEEEEE-TTS-EEEEEEE--SS-TT--
T ss_pred CccccceecCCCeeEeecCCCe----EEEEEEecCCceeeeecceEcCCCccc
Confidence 4579999999999999987543 56888887 557778777776665543
Done!