BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025226
(256 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225434780|ref|XP_002281924.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 1 [Vitis vinifera]
gi|359478900|ref|XP_003632183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
isoform 2 [Vitis vinifera]
gi|297745987|emb|CBI16043.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/254 (74%), Positives = 221/254 (87%), Gaps = 4/254 (1%)
Query: 1 MATRLFSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGR 60
MA R FSRSKIPI ++ +LQNL K P K + F P+++ +++P+LG + YHDGR
Sbjct: 1 MAIRAFSRSKIPIFSAKILQNLIKAPIKESTRFQF----PVLEVGSYKPLLGSKLYHDGR 56
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
PRG LWRGKKLIGKEALFVILGLKRFKDDEE L+KFIK+HVLRLLKMD+VAVL ELERQE
Sbjct: 57 PRGPLWRGKKLIGKEALFVILGLKRFKDDEENLRKFIKSHVLRLLKMDMVAVLTELERQE 116
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E LAV++F +IRKQDWY+PD Y+YKDLIIALA+ KM++AMQ+WESMRKEDLFPD QTY
Sbjct: 117 EVSLAVEVFRVIRKQDWYKPDVYLYKDLIIALAKCKKMDDAMQLWESMRKEDLFPDYQTY 176
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
TEVIRGFL+ GSPADAMNIYEDM KSPDPPEELPFRILLKGLLPHPLLR++VK+DFEE+F
Sbjct: 177 TEVIRGFLRYGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIF 236
Query: 241 PEKHAYDPPEEIFG 254
P++H YDPPEEIFG
Sbjct: 237 PDRHVYDPPEEIFG 250
>gi|225434377|ref|XP_002276778.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
gi|297745785|emb|CBI15841.3| unnamed protein product [Vitis vinifera]
Length = 252
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/254 (73%), Positives = 221/254 (87%), Gaps = 4/254 (1%)
Query: 1 MATRLFSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGR 60
MA R FSRSKIPI ++ +LQ+L K+P K + F P+++ +++P+ GL+ YHDGR
Sbjct: 1 MAIRAFSRSKIPIFSAKILQSLIKSPIKESTKFQF----PVLEVASNKPLFGLKHYHDGR 56
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
PRG LWRGKKLIGKEALFVILGLKRFKDDEEKL+KFIK+HVLRLLKMD++AVL ELERQE
Sbjct: 57 PRGPLWRGKKLIGKEALFVILGLKRFKDDEEKLRKFIKSHVLRLLKMDMIAVLTELERQE 116
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E LAV++F + +KQDWY+PD Y+YKDLIIALA+ KM+ AMQ+WESMRKEDLFPD QTY
Sbjct: 117 EVTLAVEVFRVFQKQDWYKPDVYLYKDLIIALAKCKKMDNAMQLWESMRKEDLFPDYQTY 176
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
TEVIRGFL+ GSPADAMNIYEDM KSPDPPEELPFRILLKGLLPHPLLR++VK+DFEE+F
Sbjct: 177 TEVIRGFLRHGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDFEEIF 236
Query: 241 PEKHAYDPPEEIFG 254
P++H YDPPEEIFG
Sbjct: 237 PDRHVYDPPEEIFG 250
>gi|297815852|ref|XP_002875809.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321647|gb|EFH52068.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 257
Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust.
Identities = 183/256 (71%), Positives = 220/256 (85%), Gaps = 2/256 (0%)
Query: 2 ATRLFSRSKIPILASIVLQNLTKNPS-KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGR 60
A R+FSR K+P ASI QNLT+NPS SF KPK+ + + + ++HDGR
Sbjct: 3 AIRVFSR-KLPTFASIFFQNLTRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 61
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
PRG LWRGKKLIGKEALFVILGLKR KDD+EKLQKFIKTHV RLLK+D++AV+ ELERQE
Sbjct: 62 PRGPLWRGKKLIGKEALFVILGLKRLKDDDEKLQKFIKTHVFRLLKLDMLAVIGELERQE 121
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
ET LA+K+F++I+KQ+WYQPD ++YKDLI++LA++ +M+EAM +WE M+KE+LFPDSQTY
Sbjct: 122 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 181
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
TEVIRGFL+DG PADAMN+YEDM+KSPDPPEELPFR+LLKGLLPHPLLR+KVKKDFEELF
Sbjct: 182 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 241
Query: 241 PEKHAYDPPEEIFGKL 256
PEKHAYDPPEEIFG+
Sbjct: 242 PEKHAYDPPEEIFGRC 257
>gi|255552422|ref|XP_002517255.1| conserved hypothetical protein [Ricinus communis]
gi|223543626|gb|EEF45155.1| conserved hypothetical protein [Ricinus communis]
Length = 258
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 185/257 (71%), Positives = 210/257 (81%), Gaps = 11/257 (4%)
Query: 6 FSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKS-PIVDFV-------AHEPILGLRQYH 57
F RS+I L+ ++LQNLT P K P S + D +H GLRQYH
Sbjct: 3 FPRSRIAKLSVVLLQNLTNKPIKQ---TQLPPNSQALFDLNILNKHNHSHNSFSGLRQYH 59
Query: 58 DGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELE 117
DGRPRG LWRGKKLIGKEALFVILGLKRFKD+EEKL KFIKTHVLRLLKMD++AVL ELE
Sbjct: 60 DGRPRGPLWRGKKLIGKEALFVILGLKRFKDEEEKLDKFIKTHVLRLLKMDMIAVLTELE 119
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
RQEE LA K+F II+KQDWY PD Y+YKDLIIAL R+GKM++AM++WE+MR E+LFPDS
Sbjct: 120 RQEEVSLATKVFQIIQKQDWYNPDVYLYKDLIIALTRSGKMDQAMKLWEAMRSENLFPDS 179
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
Q YTE+IRGFL+DGSP DAMNIYEDM KSPDPPEELPFRILLKGLLPHPLLR++VK+D+E
Sbjct: 180 QMYTELIRGFLRDGSPGDAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDYE 239
Query: 238 ELFPEKHAYDPPEEIFG 254
ELFPEKH YDPPEEIFG
Sbjct: 240 ELFPEKHVYDPPEEIFG 256
>gi|449455076|ref|XP_004145279.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449475090|ref|XP_004154371.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449508514|ref|XP_004163333.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 255
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/256 (71%), Positives = 216/256 (84%), Gaps = 5/256 (1%)
Query: 1 MATRLFSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFV--AHEPILGLRQYHD 58
MA R FSRSK+P+ AS+ LQ LT+ P ++ + KS I DF + PI G R YHD
Sbjct: 1 MAIRWFSRSKLPVFASVFLQGLTRRPIRD---VPLPVKSTITDFQPDSRRPIWGFRLYHD 57
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
GRPRG LWR +K IGKEALFVI GLKRFK+DEEK +KF+K+HV RLLK+D+VAVL ELER
Sbjct: 58 GRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELER 117
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
QEE LAVKIF +IRKQDWY+PD YIYKDLIIALAR+ KM++AM++WESMR+E+LFPDSQ
Sbjct: 118 QEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQ 177
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
TYTEVIRGFL+ GSP+DAMN+YEDM KSPDPP+ELPFRILLKGLLPHPLLR++VK+DFEE
Sbjct: 178 TYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE 237
Query: 239 LFPEKHAYDPPEEIFG 254
LFP++H +DPPEEIF
Sbjct: 238 LFPDQHVFDPPEEIFS 253
>gi|15232674|ref|NP_190271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75266318|sp|Q9STF9.1|PP266_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g46870
gi|5541672|emb|CAB51178.1| putative protein [Arabidopsis thaliana]
gi|26450732|dbj|BAC42475.1| unknown protein [Arabidopsis thaliana]
gi|28950815|gb|AAO63331.1| At3g46870 [Arabidopsis thaliana]
gi|332644692|gb|AEE78213.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 257
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/256 (69%), Positives = 217/256 (84%), Gaps = 2/256 (0%)
Query: 2 ATRLFSRSKIPILASIVLQNLTKNPS-KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGR 60
A R+ SR K P ASI QN+T+NPS SF KPK+ + + + ++HDGR
Sbjct: 3 AIRVCSR-KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGR 61
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
PRG LWRGKKLIGKEALFVILGLKR K+D+EKL KFIKTHV RLLK+D++AV+ ELERQE
Sbjct: 62 PRGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQE 121
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
ET LA+K+F++I+KQ+WYQPD ++YKDLI++LA++ +M+EAM +WE M+KE+LFPDSQTY
Sbjct: 122 ETALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTY 181
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
TEVIRGFL+DG PADAMN+YEDM+KSPDPPEELPFR+LLKGLLPHPLLR+KVKKDFEELF
Sbjct: 182 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELF 241
Query: 241 PEKHAYDPPEEIFGKL 256
PEKHAYDPPEEIFG+
Sbjct: 242 PEKHAYDPPEEIFGRC 257
>gi|224106373|ref|XP_002314145.1| predicted protein [Populus trichocarpa]
gi|222850553|gb|EEE88100.1| predicted protein [Populus trichocarpa]
Length = 257
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/260 (73%), Positives = 214/260 (82%), Gaps = 7/260 (2%)
Query: 1 MATRLFSRSKIPILASIV--LQNLTKNPSK-NFSFLAFKPKSPIVDFVAHEPILGLRQYH 57
M TR SRSKIP +SI+ LQNLT S + + L S I F+ GLRQYH
Sbjct: 1 MLTRALSRSKIPNFSSIIVILQNLTTKQSIIDQTQLPLSKASNIQSFLVPA---GLRQYH 57
Query: 58 DGRPRGSLWRGKKLIGKEALFVILGLKRFK-DDEEKLQKFIKTHVLRLLKMDIVAVLIEL 116
DGRPRG LWRGKKLIGKEALFVILGLKRFK DD+EKL +FIKTHV RLLK+D++AVL EL
Sbjct: 58 DGRPRGPLWRGKKLIGKEALFVILGLKRFKNDDDEKLDRFIKTHVFRLLKLDMIAVLSEL 117
Query: 117 ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
ERQEE LAVKIF +I+KQDWY+PD Y+YKDLI+AL +TGKM EAM++WE MR EDLFPD
Sbjct: 118 ERQEEVSLAVKIFRVIQKQDWYKPDVYLYKDLIMALLKTGKMEEAMKLWEDMRNEDLFPD 177
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
SQ YTE IRG+L+DGSPADAMNIYEDM KSPDPPEELPFRILLKGLLPHPLLR++VK+D+
Sbjct: 178 SQMYTEAIRGYLRDGSPADAMNIYEDMKKSPDPPEELPFRILLKGLLPHPLLRNRVKQDY 237
Query: 237 EELFPEKHAYDPPEEIFGKL 256
EELFPEKH YDPPEEIFG L
Sbjct: 238 EELFPEKHVYDPPEEIFGIL 257
>gi|356538964|ref|XP_003537970.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Glycine max]
Length = 255
Score = 352 bits (904), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 176/257 (68%), Positives = 209/257 (81%), Gaps = 7/257 (2%)
Query: 1 MATRLFSRS-KIPILASIVLQNLTKN--PSKNFSFLAFKPKSPIVDFVAHEPILGLRQYH 57
MA+R F ++ KI AS++L T++ P K+ S + V+F + + L RQYH
Sbjct: 1 MASRSFLKNWKILDFASLLLGEFTRSIKPIKDVSSTSLT----FVEFNSFKTALCFRQYH 56
Query: 58 DGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELE 117
DGRPRG LW+GKKLIGKEALFVI G KRF DDE+KL KFIKTHVLRLLKMD++AVL ELE
Sbjct: 57 DGRPRGPLWKGKKLIGKEALFVISGFKRFNDDEDKLHKFIKTHVLRLLKMDMIAVLTELE 116
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
RQE+ LA+ +F +++KQDWY+PDAY+YKDLIIALAR KM+E +Q+WESMRKE+LFPDS
Sbjct: 117 RQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWESMRKENLFPDS 176
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
QTYTEVIRGFL GSPADAMNIYEDM SPDPPEELPFRILLKGLLPHPLLR+KVK+DFE
Sbjct: 177 QTYTEVIRGFLNYGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHPLLRNKVKQDFE 236
Query: 238 ELFPEKHAYDPPEEIFG 254
E+FP+ YDPP+EIFG
Sbjct: 237 EIFPDSSIYDPPQEIFG 253
>gi|357122492|ref|XP_003562949.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 246
Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 152/201 (75%), Positives = 176/201 (87%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKEALF I GLKRFK DEEKL++F+K HV RLLK D +AVL
Sbjct: 44 RAFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLKEFVKRHVARLLKADKLAVL 103
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE L+VK+F I++K+DWY+PD Y+YKDLIIALA+ KM EAM++W +MR E L
Sbjct: 104 GELERQEEVDLSVKMFRIVQKEDWYKPDVYMYKDLIIALAKCKKMEEAMEIWGNMRDEKL 163
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPDSQTY EVIRGFL+ GSP+DAMNIYEDM +SPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 164 FPDSQTYAEVIRGFLRYGSPSDAMNIYEDMKRSPDPPEELPFRVLLKGLLPHPLLRNRVK 223
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEELFPE+H YDPPEEIFG
Sbjct: 224 QDFEELFPERHIYDPPEEIFG 244
>gi|326512702|dbj|BAK03258.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 251
Score = 316 bits (809), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 150/201 (74%), Positives = 178/201 (88%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKEALF I GLKRFK DEEKL++FIK HV RLLK D +AVL
Sbjct: 49 RAFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLREFIKRHVARLLKADKLAVL 108
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE L+VK+F II+K+DWY+PD Y+YKDLII+LA+ KM+EAM +W +M++E+L
Sbjct: 109 GELERQEEVDLSVKMFRIIQKEDWYKPDVYMYKDLIISLAKCKKMDEAMDIWGNMKEENL 168
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPDSQTY EVIRGFL+ GSP+DAMNIYEDM +SPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 169 FPDSQTYAEVIRGFLRYGSPSDAMNIYEDMKRSPDPPEELPFRVLLKGLLPHPLLRNRVK 228
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEELFPE+H YDPP++IFG
Sbjct: 229 QDFEELFPERHIYDPPDDIFG 249
>gi|414590513|tpg|DAA41084.1| TPA: hypothetical protein ZEAMMB73_430161 [Zea mays]
Length = 254
Score = 315 bits (808), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 151/201 (75%), Positives = 173/201 (86%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKEALF I GLKRFK DEEKL F++ +V RLLK D +AVL
Sbjct: 52 RAFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVL 111
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE LAVK+F II+K+DWY+PD Y+YKDLIIALA+ M EAM +W +MR E+L
Sbjct: 112 GELERQEEVDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKNMEEAMVIWGNMRDENL 171
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPDSQTY EVIRGFL+ GSP+DAMNIYEDM KSPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 172 FPDSQTYAEVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGLLPHPLLRNRVK 231
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEE+FPE+H YDPPEEIFG
Sbjct: 232 QDFEEMFPERHIYDPPEEIFG 252
>gi|226494319|ref|NP_001143431.1| uncharacterized protein LOC100276080 [Zea mays]
gi|195620394|gb|ACG32027.1| hypothetical protein [Zea mays]
Length = 254
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 151/201 (75%), Positives = 173/201 (86%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKE+LF I GLKRFK DEEKL F++ +V RLLK D +AVL
Sbjct: 52 RAFHDGRPRGPLWRSKKLIGKESLFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVL 111
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE LAVK+F II+K+DWY+PD Y+YKDLIIALA+ KM EAM +W +MR E+L
Sbjct: 112 GELERQEEVDLAVKMFRIIQKEDWYKPDIYMYKDLIIALAKCKKMEEAMVIWGNMRDENL 171
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPDSQTY EVIRGFL+ GSP+DAMNIYEDM KSPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 172 FPDSQTYAEVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGLLPHPLLRNRVK 231
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEE FPE+H YDPPEEIFG
Sbjct: 232 QDFEEFFPERHIYDPPEEIFG 252
>gi|242050490|ref|XP_002462989.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
gi|241926366|gb|EER99510.1| hypothetical protein SORBIDRAFT_02g035860 [Sorghum bicolor]
Length = 258
Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 152/201 (75%), Positives = 174/201 (86%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKEALF I GLKRFK DEEKL F++ +V RLLK D +AVL
Sbjct: 56 RAFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEEKLADFVRRYVARLLKADKLAVL 115
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE LAVK+F II+K+DWY+PD Y+YKD+IIALA+ KM EAM +W +MR E+L
Sbjct: 116 GELERQEEVDLAVKMFRIIQKEDWYKPDIYMYKDVIIALAKCKKMEEAMVIWGNMRDENL 175
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPDSQTY EVIRGFL+ GSP+DAMNIYEDM KSPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 176 FPDSQTYAEVIRGFLRYGSPSDAMNIYEDMKKSPDPPEELPFRVLLKGLLPHPLLRNRVK 235
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEELFPE+H YDPPEEIFG
Sbjct: 236 QDFEELFPERHIYDPPEEIFG 256
>gi|115472667|ref|NP_001059932.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|28564798|dbj|BAC57728.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113611468|dbj|BAF21846.1| Os07g0549200 [Oryza sativa Japonica Group]
gi|215766634|dbj|BAG98696.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218199812|gb|EEC82239.1| hypothetical protein OsI_26409 [Oryza sativa Indica Group]
Length = 262
Score = 311 bits (796), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/201 (73%), Positives = 175/201 (87%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKEALF I GLKRFK DEE+L +F++ +V RLLK D +AVL
Sbjct: 60 RAFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVL 119
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE LAVK+F II+K+DWY+PD ++YKDLI+ALA+ KM+EAM +W +M E+L
Sbjct: 120 GELERQEEVDLAVKMFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENL 179
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPD+QTY EVIRGFL+ GSP+DAMNIYE+M KSPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 180 FPDAQTYAEVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGLLPHPLLRNRVK 239
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEELFPE+H YDPPEEIFG
Sbjct: 240 QDFEELFPERHIYDPPEEIFG 260
>gi|125600640|gb|EAZ40216.1| hypothetical protein OsJ_24661 [Oryza sativa Japonica Group]
Length = 256
Score = 299 bits (765), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 143/201 (71%), Positives = 171/201 (85%), Gaps = 6/201 (2%)
Query: 54 RQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
R +HDGRPRG LWR KKLIGKEALF I GLKRFK DEE+L +F++ +V RLLK D +AVL
Sbjct: 60 RAFHDGRPRGPLWRSKKLIGKEALFAIQGLKRFKGDEERLGEFVRRYVARLLKADKLAVL 119
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
ELERQEE +F II+K+DWY+PD ++YKDLI+ALA+ KM+EAM +W +M E+L
Sbjct: 120 GELERQEE------MFRIIQKEDWYKPDVFMYKDLIVALAKCKKMDEAMVIWGNMTDENL 173
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
FPD+QTY EVIRGFL+ GSP+DAMNIYE+M KSPDPPEELPFR+LLKGLLPHPLLR++VK
Sbjct: 174 FPDAQTYAEVIRGFLRYGSPSDAMNIYEEMKKSPDPPEELPFRVLLKGLLPHPLLRNRVK 233
Query: 234 KDFEELFPEKHAYDPPEEIFG 254
+DFEELFPE+H YDPPEEIFG
Sbjct: 234 QDFEELFPERHIYDPPEEIFG 254
>gi|351727605|ref|NP_001238702.1| uncharacterized protein LOC100306428 [Glycine max]
gi|255628511|gb|ACU14600.1| unknown [Glycine max]
Length = 150
Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/148 (76%), Positives = 133/148 (89%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
MD++AVL ELERQE+ LA+ +F +++KQDWY+PDAY+YKDLIIALAR KM+E +Q+WE
Sbjct: 1 MDMIAVLTELERQEQVSLALMMFKVMQKQDWYKPDAYLYKDLIIALARAKKMDEVLQLWE 60
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
SMR+E+LFPDSQTYTEVIRGFL GSPADAMNIYEDM SPDPPEELPFRILLKGLLPHP
Sbjct: 61 SMREENLFPDSQTYTEVIRGFLNHGSPADAMNIYEDMKNSPDPPEELPFRILLKGLLPHP 120
Query: 227 LLRSKVKKDFEELFPEKHAYDPPEEIFG 254
LLR+KVK+DFEE+FP+ YDPP+EIFG
Sbjct: 121 LLRNKVKQDFEEIFPDSSIYDPPQEIFG 148
>gi|225436656|ref|XP_002280518.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
Length = 248
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/195 (47%), Positives = 142/195 (72%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
RP S+WR KK +GKE L LKR + D + +F+++ V RLL+ D+V+VL E +R
Sbjct: 42 SRPSLSIWRRKKEMGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQR 101
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q++ L++K++D++RK+ WY+PD Y Y+D+++ LAR K++E +VWE +++E++ D
Sbjct: 102 QDQVFLSMKLYDVVRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQH 161
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
T+ +++R FL G P++AM+IYE+M +SPDPP LP+R++LKGLLP+P LR KVK DF E
Sbjct: 162 TFGDIVRAFLDGGLPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLE 221
Query: 239 LFPEKHAYDPPEEIF 253
LFP YDPPE++F
Sbjct: 222 LFPGMIVYDPPEDLF 236
>gi|356523434|ref|XP_003530344.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 232
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 139/189 (73%)
Query: 65 LWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETIL 124
+WR KK +GKE L V LKRF+ D +L +FI++ V RLLK D+VAVL E +RQ + L
Sbjct: 33 IWRRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFL 92
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
VK++DI+RK+ WY+PD + Y+D+++ LAR ++ EA +VW ++ E++ D T+ ++I
Sbjct: 93 CVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDII 152
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
R FL +G P++AM+IYE+M +SP+PP LPFR++LKGL+P+P LR KVK DF E+FP
Sbjct: 153 RAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMI 212
Query: 245 AYDPPEEIF 253
YDPPE++F
Sbjct: 213 IYDPPEDLF 221
>gi|356569420|ref|XP_003552899.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 234
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/189 (50%), Positives = 139/189 (73%)
Query: 65 LWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETIL 124
+WR KK +GKE L V LKRF+ D +L +FI++ V RLLK D+VAVL E +RQ + L
Sbjct: 31 IWRRKKEMGKEGLVVAKELKRFRSDPVRLDRFIRSSVSRLLKSDLVAVLAEFQRQNQFFL 90
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
VK++DI+RK+ WY+PD + Y+D+++ LAR ++ EA +VW ++ E++ D T+ ++I
Sbjct: 91 CVKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVEEAKKVWGDLKTEEVLFDQHTFGDII 150
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
R FL +G P++AM+IYE+M +SP+PP LPFR++LKGL+P+P LR KVK DF E+FP
Sbjct: 151 RAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKVKDDFLEIFPGMI 210
Query: 245 AYDPPEEIF 253
YDPPE++F
Sbjct: 211 IYDPPEDLF 219
>gi|357438675|ref|XP_003589614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478662|gb|AES59865.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 232
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 88/195 (45%), Positives = 142/195 (72%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
+P S+WR KK +GKE L + LKR + D +L +F++++V RLLK D+V+VL E R
Sbjct: 23 SKPSLSIWRRKKELGKEGLIITKELKRLQSDPVRLDRFVRSNVSRLLKSDLVSVLFEFHR 82
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q+ L++K++DI+RK+ WY+PD + Y+D+++ LAR +++E +VW+ ++ E + D
Sbjct: 83 QDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGEGVLFDQH 142
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
T+ +++R +L G P++AM+IYE+M +SP+PP LPFR++LKGL+P+P LR K+K DF E
Sbjct: 143 TFGDIVRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDFLE 202
Query: 239 LFPEKHAYDPPEEIF 253
+FP+ YDPPE++F
Sbjct: 203 VFPDMIIYDPPEDLF 217
>gi|449442589|ref|XP_004139064.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 256
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/193 (47%), Positives = 139/193 (72%)
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
P S+WR KK +GKE L V+ LKR + + +L +FI +HV RLLK D+VAVL+EL+RQ
Sbjct: 52 PSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQN 111
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
L +K+++++RK+ WY+PD + Y+D+++ LA+ ++ E QVWE ++KE + D T+
Sbjct: 112 HVFLCMKLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTF 171
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
++IR +L + ++AM+IY +M +SPD P LPFR++LKGL+P+P LR +VK DF ELF
Sbjct: 172 GDIIRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELF 231
Query: 241 PEKHAYDPPEEIF 253
P+ YDPPE++F
Sbjct: 232 PDMIVYDPPEDLF 244
>gi|147841740|emb|CAN68786.1| hypothetical protein VITISV_024068 [Vitis vinifera]
gi|296083864|emb|CBI24252.3| unnamed protein product [Vitis vinifera]
Length = 194
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 134/182 (73%)
Query: 72 IGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131
+GKE L LKR + D + +F+++ V RLL+ D+V+VL E +RQ++ L++K++D+
Sbjct: 1 MGKEGLIAAKELKRLRSDPVRFDRFMRSSVSRLLRSDLVSVLAEFQRQDQVFLSMKLYDV 60
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+RK+ WY+PD Y Y+D+++ LAR K++E +VWE +++E++ D T+ +++R FL G
Sbjct: 61 VRKEIWYRPDMYFYRDMLMMLARNKKVDETKRVWEDLKREEVLFDQHTFGDIVRAFLDGG 120
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
P++AM+IYE+M +SPDPP LP+R++LKGLLP+P LR KVK DF ELFP YDPPE+
Sbjct: 121 LPSEAMDIYEEMRRSPDPPLSLPYRVILKGLLPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 252 IF 253
+F
Sbjct: 181 LF 182
>gi|224059705|ref|XP_002299976.1| predicted protein [Populus trichocarpa]
gi|222847234|gb|EEE84781.1| predicted protein [Populus trichocarpa]
Length = 194
Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 134/182 (73%)
Query: 72 IGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131
+GKE L LKR + + +L +FI ++V RLLK D++AVL E +RQ++ L +K++D+
Sbjct: 1 MGKEGLMAAKELKRLQSNPVRLDRFITSNVSRLLKSDLLAVLAEFQRQDQVFLCMKLYDV 60
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+RK+ WY+PD ++++D+++ LAR K++EA QVW +R+E++ D T+ ++IR FL +G
Sbjct: 61 VRKEIWYRPDMFLFRDMLMMLARNKKVDEANQVWRDLRREEVLFDQHTFGDIIRAFLDNG 120
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
P+ AM+IYE+M +SPDPP LPFR++LKGL+P P LR +VK DF ELFP+ YDP E+
Sbjct: 121 LPSKAMDIYEEMRQSPDPPISLPFRVILKGLIPFPELREEVKDDFLELFPDMIVYDPAED 180
Query: 252 IF 253
+F
Sbjct: 181 LF 182
>gi|242059543|ref|XP_002458917.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
gi|241930892|gb|EES04037.1| hypothetical protein SORBIDRAFT_03g042630 [Sorghum bicolor]
Length = 523
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 131/193 (67%), Gaps = 5/193 (2%)
Query: 65 LWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+WR KK +GKE L + LKR +L++F+++HV RLL+ D++AVL EL RQ
Sbjct: 322 IWRRKKEMGKEGLMAVAQLKRLAALPPAGAHPRLEQFMRSHVSRLLRTDLLAVLAELLRQ 381
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
+ IL++KI+ ++RK+ WY+PD Y Y+D++ LAR K+++ QVW ++ ED+ D T
Sbjct: 382 DHVILSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKIDDTRQVWADLKSEDVLFDQHT 441
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
Y +++R F G AM IYEDM SPDPP LPFR++LKGL+P+P LR K+K+DF EL
Sbjct: 442 YGDIVRAFCDAGLIDLAMEIYEDMRSSPDPPLSLPFRVILKGLVPYPELREKIKQDFLEL 501
Query: 240 FPEKHAYDPPEEI 252
FP+ YDPP+ +
Sbjct: 502 FPDMIVYDPPDTL 514
>gi|356547293|ref|XP_003542050.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Glycine max]
Length = 231
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 92/194 (47%), Positives = 136/194 (70%), Gaps = 1/194 (0%)
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
P S+WR KK +GKE L V LKR + D +L FI+ RLLK D+VAVL+E +RQ
Sbjct: 27 PSLSIWRRKKEMGKEGLVVAKELKRLRSDLVRLDLFIQPSFSRLLKSDLVAVLVEFQRQN 86
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+ L K++DI+ K+ WY+PD + Y+D+++ LAR ++ EA VW +++E++ D T+
Sbjct: 87 QVFLCTKLYDIVWKEIWYRPDMFFYRDMLMMLARNKRVEEAKSVWGDLKEEEVLFDQHTF 146
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK-KDFEEL 239
++IR FL +G P++AM+IYE+M +SP+PP LPFR++LKGL+P+P LR K+K DF E+
Sbjct: 147 GDIIRAFLDNGLPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDDFLEI 206
Query: 240 FPEKHAYDPPEEIF 253
FP YDPPE++F
Sbjct: 207 FPGMIIYDPPEDLF 220
>gi|108707659|gb|ABF95454.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215767688|dbj|BAG99916.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 247
Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 130/193 (67%), Gaps = 5/193 (2%)
Query: 65 LWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+WR KK +GKE L V+ LKR +L++F+++HV RLL+ D++AVL EL RQ
Sbjct: 46 IWRRKKEMGKEGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQ 105
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
+ +L++KI+ ++RK+ WY+PD Y Y+D++ LAR K+ E QVW ++ ED+ D T
Sbjct: 106 DHVLLSMKIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQHT 165
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
Y +++R F G AM YEDM SPDPP LPFR++LKGL+P+P LR K+K+DF EL
Sbjct: 166 YGDIVRAFCDAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGLVPYPDLREKIKQDFLEL 225
Query: 240 FPEKHAYDPPEEI 252
FP+ YDPP+ +
Sbjct: 226 FPDMIVYDPPDSL 238
>gi|219886827|gb|ACL53788.1| unknown [Zea mays]
gi|219887537|gb|ACL54143.1| unknown [Zea mays]
gi|414879223|tpg|DAA56354.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879224|tpg|DAA56355.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 248
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/193 (46%), Positives = 130/193 (67%), Gaps = 5/193 (2%)
Query: 65 LWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+WR KK +GKE L V+ LKR +L++F+++HV RLL+ D++AVL EL RQ
Sbjct: 47 IWRRKKEMGKEGLMVVAQLKRLAALPPAGGHPRLEQFMRSHVSRLLRTDLLAVLAELLRQ 106
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
+ L++KI+ ++RK+ WY+PD Y Y+D++ LAR K+NE QVW ++ ED+ D T
Sbjct: 107 DHVSLSMKIYGVVRKEIWYRPDMYFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQHT 166
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
Y +++R F AM IY+DM SPDPP LPFR++LKGL+P+P LR K+K+DF EL
Sbjct: 167 YGDIVRAFCDADLIDLAMEIYDDMRSSPDPPLSLPFRVILKGLVPYPELREKIKQDFLEL 226
Query: 240 FPEKHAYDPPEEI 252
FP+ YDPP+ +
Sbjct: 227 FPDMIVYDPPDTL 239
>gi|357112657|ref|XP_003558124.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Brachypodium distachyon]
Length = 248
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 89/197 (45%), Positives = 130/197 (65%), Gaps = 5/197 (2%)
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIE 115
P S+WR KK +GKE L + LKR ++L ++++ HV RLL+ D++AVL E
Sbjct: 43 PSLSIWRRKKEMGKEGLMAVAQLKRLAALPPAGGHQRLDQYMRLHVSRLLRTDLLAVLAE 102
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L RQ+ +L++KI+ ++RK+ WY+PD Y Y+D++ LAR K++E QVW ++ ED+
Sbjct: 103 LLRQDHVLLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKIDETRQVWADLKSEDVLF 162
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D TY +++R F G AM YEDM SP+PP LPFR++LKGL+P+P LR K+K D
Sbjct: 163 DQHTYGDIVRVFCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGLIPYPELREKIKHD 222
Query: 236 FEELFPEKHAYDPPEEI 252
F ELFP+ YDPP+ +
Sbjct: 223 FLELFPDMIVYDPPDSL 239
>gi|326531840|dbj|BAK01296.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 229
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/197 (44%), Positives = 130/197 (65%), Gaps = 5/197 (2%)
Query: 61 PRGSLWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIE 115
P S+WR KK +GKE L + LKR ++L +++K HV RLL+ D++AVL E
Sbjct: 24 PSLSIWRRKKEMGKEGLMAVAQLKRLAALPPAGGHQRLVEYMKLHVSRLLRTDLLAVLAE 83
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L RQ+ +L++KI+ ++RK+ WY+PD Y Y+D++ LAR K++E QVW ++ E +
Sbjct: 84 LLRQDHVLLSMKIYGVVRKEIWYRPDMYFYRDMLHMLARNKKVDETRQVWADLKSEGVMF 143
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D TY +++R F G AM YEDM SP+PP LPFR++LKGL+P+P LR K+K++
Sbjct: 144 DQHTYGDIVRVFCDAGLIDLAMEFYEDMRSSPEPPLSLPFRVILKGLIPYPELREKIKQE 203
Query: 236 FEELFPEKHAYDPPEEI 252
F ELFP+ YDPP+ +
Sbjct: 204 FLELFPDMIVYDPPDSL 220
>gi|116830983|gb|ABK28447.1| unknown [Arabidopsis thaliana]
Length = 197
Score = 181 bits (458), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 127/181 (70%)
Query: 72 IGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131
+ KE L LKR + +L +FI +HV RLLK D+V+VL E +RQ + L +K++++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+R++ WY+PD + Y+D+++ LAR K++E +VWE ++KE++ D T+ +++RGFL +
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
P +AM +Y +M +SPD P LPFR++LKGL+P+P LR KVK DF ELFP YDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 252 I 252
I
Sbjct: 181 I 181
>gi|145336941|ref|NP_176425.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122180316|sp|Q1PFH7.1|PPR89_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62350
gi|91806011|gb|ABE65734.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332195836|gb|AEE33957.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 196
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 83/181 (45%), Positives = 127/181 (70%)
Query: 72 IGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131
+ KE L LKR + +L +FI +HV RLLK D+V+VL E +RQ + L +K++++
Sbjct: 1 MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+R++ WY+PD + Y+D+++ LAR K++E +VWE ++KE++ D T+ +++RGFL +
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
P +AM +Y +M +SPD P LPFR++LKGL+P+P LR KVK DF ELFP YDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 252 I 252
I
Sbjct: 181 I 181
>gi|125585935|gb|EAZ26599.1| hypothetical protein OsJ_10499 [Oryza sativa Japonica Group]
gi|218192624|gb|EEC75051.1| hypothetical protein OsI_11161 [Oryza sativa Indica Group]
Length = 195
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 125/186 (67%), Gaps = 5/186 (2%)
Query: 72 IGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAV 126
+GKE L V+ LKR +L++F+++HV RLL+ D++AVL EL RQ+ +L++
Sbjct: 1 MGKEGLMVVGQLKRLAALPPAGGSPRLEQFMRSHVSRLLRNDLLAVLAELLRQDHVLLSM 60
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
KI+ ++RK+ WY+PD Y Y+D++ LAR K+ E QVW ++ ED+ D TY +++R
Sbjct: 61 KIYSVVRKEIWYRPDMYFYRDMLYMLARNKKIEETRQVWADLKSEDVLFDQHTYGDIVRA 120
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
F G AM YEDM SPDPP LPFR++LKGL+P+P LR K+K+DF ELFP+ Y
Sbjct: 121 FCDAGLIDLAMEFYEDMRSSPDPPLSLPFRVILKGLVPYPDLREKIKQDFLELFPDMIVY 180
Query: 247 DPPEEI 252
DPP+ +
Sbjct: 181 DPPDSL 186
>gi|7940277|gb|AAF70836.1|AC003113_3 F2401.8 [Arabidopsis thaliana]
Length = 281
Score = 179 bits (455), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/231 (39%), Positives = 137/231 (59%), Gaps = 32/231 (13%)
Query: 54 RQYHDG---RPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV 110
R Y G P S+WR KK + KE L LKR + +L +FI +HV RLLK D+V
Sbjct: 36 RTYQSGPASSPSLSIWRRKKEMSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLV 95
Query: 111 AVLIELERQEETILAVKI-----------------------------FDIIRKQDWYQPD 141
+VL E +RQ + L +K+ ++++R++ WY+PD
Sbjct: 96 SVLAEFQRQNQVFLCMKVNWSPPVRKFGCFDLEIGAEMEPKTKCGLLYEVVRREIWYRPD 155
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
+ Y+D+++ LAR K++E +VWE ++KE++ D T+ +++RGFL + P +AM +Y
Sbjct: 156 MFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNELPLEAMRLYG 215
Query: 202 DMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+M +SPD P LPFR++LKGL+P+P LR KVK DF ELFP YDPPE+I
Sbjct: 216 EMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPEDI 266
>gi|297840301|ref|XP_002888032.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
gi|297333873|gb|EFH64291.1| hypothetical protein ARALYDRAFT_475108 [Arabidopsis lyrata subsp.
lyrata]
Length = 196
Score = 176 bits (447), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 81/181 (44%), Positives = 125/181 (69%)
Query: 72 IGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131
+ KE L LKR + +L +FI +HV RLLK D+V+VL E +RQ + L +K++++
Sbjct: 1 MSKEGLIAAKELKRLQTQLVRLDRFIASHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+R++ WY+PD + Y+D+++ LAR K++E +VWE ++KE + D T+ +++R FL +
Sbjct: 61 VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEGVLFDQHTFGDLVRAFLDNE 120
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
P +A+ +Y +M SPDPP LPFR++LKGL+P+P LR KVK DF ELFP YDPPE+
Sbjct: 121 LPLEAIRLYGEMRDSPDPPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180
Query: 252 I 252
+
Sbjct: 181 L 181
>gi|357462163|ref|XP_003601363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490411|gb|AES71614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 291
Score = 172 bits (437), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 90/250 (36%), Positives = 142/250 (56%), Gaps = 55/250 (22%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
+P S+WR KK +GKE L + LKR + D +L +F++++V RLLK D+V+VL E R
Sbjct: 27 SKPSLSIWRRKKELGKEGLVITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFEFHR 86
Query: 119 Q------------------------------EETILAVKIF------------------- 129
Q E T+ ++IF
Sbjct: 87 QDNVFLSMKALLFMYWCDYMRRLSDGFDDTNEFTLEDLRIFSIGINLKYSFKLEEKKEKV 146
Query: 130 ------DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
DI+RK+ WY+PD + Y+D+++ LAR +++E +VW+ ++ E + D T+ ++
Sbjct: 147 KSFWLYDIVRKEIWYRPDMFFYRDMLVMLARNKRVDETKRVWDDLKGEGVLFDQHTFGDI 206
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+R +L G P++AM+IYE+M +SP+PP LPFR++LKGL+P+P LR K+K DF E+FP+
Sbjct: 207 VRAYLDSGMPSEAMDIYEEMRQSPEPPLSLPFRVILKGLIPYPELREKIKDDFLEVFPDM 266
Query: 244 HAYDPPEEIF 253
YDPPE++F
Sbjct: 267 IIYDPPEDLF 276
>gi|255570191|ref|XP_002526056.1| conserved hypothetical protein [Ricinus communis]
gi|223534637|gb|EEF36333.1| conserved hypothetical protein [Ricinus communis]
Length = 138
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 94/128 (73%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+K++D++RK+ WY+PD + Y+D+++ LAR K++E VW+ +++E + D T+ ++IR
Sbjct: 1 MKLYDVVRKEIWYRPDMFFYRDMLMMLARNKKVDEVKLVWQDLKREGVLFDQHTFGDIIR 60
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
FL P++AM+IYE+M +SP+ P LPFR++LKGLLP+P LR KVK DF ELFP
Sbjct: 61 AFLDSELPSEAMDIYEEMRQSPEIPLSLPFRVILKGLLPYPDLREKVKDDFLELFPNMTV 120
Query: 246 YDPPEEIF 253
YDP E++F
Sbjct: 121 YDPAEDLF 128
>gi|449476280|ref|XP_004154693.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Cucumis sativus]
Length = 241
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 95/130 (73%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A +++++RK+ WY+PD + Y+D+++ LA+ ++ E QVWE ++KE + D T+ ++
Sbjct: 100 IASLLYNVVRKEVWYRPDMFFYRDMLMMLAKNKRVEETKQVWEDLKKEGVLFDQHTFGDI 159
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
IR +L + ++AM+IY +M +SPD P LPFR++LKGL+P+P LR +VK DF ELFP+
Sbjct: 160 IRAYLDNTMLSEAMDIYREMRESPDRPLSLPFRVILKGLIPYPELREQVKDDFLELFPDM 219
Query: 244 HAYDPPEEIF 253
YDPPE++F
Sbjct: 220 IVYDPPEDLF 229
>gi|168046423|ref|XP_001775673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672946|gb|EDQ59476.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 392
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 128/227 (56%), Gaps = 27/227 (11%)
Query: 31 SFLAFKPKSPIV-----DFVAHEPILGLR-------------QYHDGRPRGSLWRGKKLI 72
SFL+ +P+ P F A PIL LR G+PRG LWR +K +
Sbjct: 148 SFLSLRPRPPTTLSSPQTFFA-SPILSLRFAPQSFQVRCGGSLKAKGKPRGPLWRQRKGV 206
Query: 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDII 132
KEAL V+ LKR K D++K + ++ RLLKMD++ VL EL RQ+E LA ++FD++
Sbjct: 207 SKEALQVVFELKRCKGDKQKERVVLQNSASRLLKMDLLMVLEELRRQQECSLAKQVFDMV 266
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
RK++WY+PD ++Y++++ + M + + ++ M++E L P++ TE++ ++++ +
Sbjct: 267 RKEEWYKPDVFLYREMMDTFGKNKLMEDVEEFYQQMQEEGLAPNAMILTEMMGAYIRNNN 326
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
A I+E++ + PE + + IL +GL K DFE+L
Sbjct: 327 ITRAYEIFEEIEQGGHQPEYVMYEILCRGL--------KKAGDFEKL 365
>gi|224286190|gb|ACN40805.1| unknown [Picea sitchensis]
Length = 274
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/164 (37%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
G+ RG LWRG+ ++ EA+ + L+R K D ++L+K T + RLLK D++AVL EL+R
Sbjct: 75 GQNRGPLWRGR-ILSTEAIQAVQALRRAKGDPQRLEKAFATKIPRLLKKDLLAVLQELQR 133
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q++ LA+++F +RK+ WY+P+ ++ D+I+ L R ++ E V ++KE L PD++
Sbjct: 134 QDQCDLALQVFKAVRKEMWYRPNLSLHADMIMMLGRNKRIEEVEAVLLELQKEGLRPDTR 193
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TE+I F+ G +AM +E M ++ P++ F +L++GL
Sbjct: 194 VCTEIIGAFIHVGMVQNAMETFELMKQTDCHPDKSTFTVLIQGL 237
>gi|255552029|ref|XP_002517059.1| conserved hypothetical protein [Ricinus communis]
gi|223543694|gb|EEF45222.1| conserved hypothetical protein [Ricinus communis]
Length = 112
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 85/153 (55%), Gaps = 52/153 (33%)
Query: 97 IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156
++THVLRLLK+D++AV ELE QEE LA+++F++I+KQ+W
Sbjct: 1 METHVLRLLKLDMIAVHTELECQEEISLAIEMFEVIQKQEW------------------- 41
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
GFL+DGSP D +NIYEDM KSPD LPFR
Sbjct: 42 -----------------------------GFLRDGSPGDGLNIYEDMKKSPD----LPFR 68
Query: 217 ILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249
KG P PLLR++VK+DFEELFPEKH YD P
Sbjct: 69 TFFKGASPGPLLRNRVKQDFEELFPEKHVYDTP 101
>gi|414887041|tpg|DAA63055.1| TPA: hypothetical protein ZEAMMB73_179106 [Zea mays]
Length = 74
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/74 (75%), Positives = 65/74 (87%)
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
MR E LFPDSQ Y +V R FL +GSP+DAM+IYE M KSPDPP+ELPFR+LLKGLLPHPL
Sbjct: 1 MRDEILFPDSQNYAKVTRRFLGNGSPSDAMSIYEGMKKSPDPPQELPFRVLLKGLLPHPL 60
Query: 228 LRSKVKKDFEELFP 241
LR++VK+DFEELFP
Sbjct: 61 LRNRVKQDFEELFP 74
>gi|223943649|gb|ACN25908.1| unknown [Zea mays]
gi|414879225|tpg|DAA56356.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879226|tpg|DAA56357.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
gi|414879227|tpg|DAA56358.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 120
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/110 (49%), Positives = 74/110 (67%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
Y Y+D++ LAR K+NE QVW ++ ED+ D TY +++R F AM IY+D
Sbjct: 2 YFYRDMLYMLARNKKINETRQVWADLKSEDVLFDQHTYGDIVRAFCDADLIDLAMEIYDD 61
Query: 203 MIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
M SPDPP LPFR++LKGL+P+P LR K+K+DF ELFP+ YDPP+ +
Sbjct: 62 MRSSPDPPLSLPFRVILKGLVPYPELREKIKQDFLELFPDMIVYDPPDTL 111
>gi|147788707|emb|CAN65295.1| hypothetical protein VITISV_017782 [Vitis vinifera]
Length = 303
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 51 LGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV 110
GLR G PR LWR + ++ EA+ V+ LK K KL++ + V RLLK D++
Sbjct: 29 CGLR----GGPRKPLWRSR-VLSTEAIQVVQSLKLAKSSI-KLEEVFSSRVSRLLKSDLL 82
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
L EL+RQ E L +K+F+ IRK+ WY+PD +Y D+I+ L + + A ++ ++K
Sbjct: 83 DTLAELQRQGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKK 142
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL--LPHPLL 228
E L PD++ YTE+I +L+ G AM +Y M S P++L IL++ L L
Sbjct: 143 EGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGEEEL 202
Query: 229 RSKVKKDFEEL--FPEK 243
+ VKK+ EE +P+K
Sbjct: 203 AAGVKKECEEYVDYPKK 219
>gi|296084249|emb|CBI24637.3| unnamed protein product [Vitis vinifera]
Length = 242
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 51 LGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV 110
GLR G PR LWR + ++ EA+ V+ LK K KL++ + V RLLK D++
Sbjct: 34 CGLR----GGPRKPLWRSR-VLSTEAIQVVQSLKLAKSSI-KLEEVFSSRVSRLLKSDLL 87
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
L EL+RQ E L +K+F+ IRK+ WY+PD +Y D+I+ L + + A ++ ++K
Sbjct: 88 DTLAELQRQGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKK 147
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL--LPHPLL 228
E L PD++ YTE+I +L+ G AM +Y M S P++L IL++ L L
Sbjct: 148 EGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGEEEL 207
Query: 229 RSKVKKDFEEL--FPEK 243
+ VKK+ EE +P+K
Sbjct: 208 AAGVKKECEEYVDYPKK 224
>gi|225434034|ref|XP_002272799.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Vitis vinifera]
Length = 237
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 51 LGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV 110
GLR G PR LWR + ++ EA+ V+ LK K KL++ + V RLLK D++
Sbjct: 29 CGLR----GGPRKPLWRSR-VLSTEAIQVVQSLKLAKSSI-KLEEVFSSRVSRLLKSDLL 82
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
L EL+RQ E L +K+F+ IRK+ WY+PD +Y D+I+ L + + A ++ ++K
Sbjct: 83 DTLAELQRQGELDLTLKVFEFIRKEVWYKPDLSLYSDMIMILGKKKLIEMAEGLFSELKK 142
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL--LPHPLL 228
E L PD++ YTE+I +L+ G AM +Y M S P++L IL++ L L
Sbjct: 143 EGLEPDTRVYTEMIGAYLQVGMTEKAMEMYGLMKASGCAPDKLTLTILIRNLENAGEEEL 202
Query: 229 RSKVKKDFEEL--FPEK 243
+ VKK+ EE +P+K
Sbjct: 203 AAGVKKECEEYVDYPKK 219
>gi|302797539|ref|XP_002980530.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
gi|300151536|gb|EFJ18181.1| hypothetical protein SELMODRAFT_420139 [Selaginella moellendorffii]
Length = 334
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
G+ +G LWR +K + +E V+ L R K + E++ IKT V RLLK+D+ L EL+R
Sbjct: 85 GKQKGHLWRTRKTLSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQR 144
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDS 177
Q E LA+K+F I+K++WY PD Y ++ LA+ G ++A +++E M+ D L P+
Sbjct: 145 QLEGELALKVFYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPEL 204
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYTE +R + +M + PP+ + +++L GL
Sbjct: 205 NTYTEYLRSLIFSRQVDKVHATVREMKEQGCPPDLVVYKVLWVGL 249
>gi|302790069|ref|XP_002976802.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
gi|300155280|gb|EFJ21912.1| hypothetical protein SELMODRAFT_416782 [Selaginella moellendorffii]
Length = 319
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 94/165 (56%), Gaps = 1/165 (0%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
G+ +G LWR +K + +E V+ L R K + E++ IKT V RLLK+D+ L EL+R
Sbjct: 66 GKQKGHLWRTRKTLSRETQLVVSDLVRHKSEPERVSSIIKTKVSRLLKLDLFGALRELQR 125
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDS 177
Q E LA+K+F I+K++WY PD Y ++ LA+ G ++A +++E M+ D L P+
Sbjct: 126 QLEGELALKVFYEIKKEEWYTPDILQYAKMLGCLAKAGLTSQAEKLFEEMQSVDGLEPEL 185
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYTE +R + +M + PP+ + +++L GL
Sbjct: 186 NTYTEYLRSLIFSRQVDKVHATVREMKEQGCPPDLVVYKVLWVGL 230
>gi|357462173|ref|XP_003601368.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355490416|gb|AES71619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 144
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 79/113 (69%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
+P S+WR KK +GKE L + LKR + D +L +F++++V RLLK D+V+VL E
Sbjct: 27 SKPSLSIWRRKKELGKEGLIITKELKRLQTDPVRLDRFVRSNVSRLLKSDLVSVLFEFHG 86
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
Q+ L++K++DI+RK+ WY+PD + Y+D+++ LAR +++E +VW+ ++ E
Sbjct: 87 QDNVFLSMKLYDIVRKEIWYRPDMFFYRDMLMMLARNKRVDETKRVWDDLKGE 139
>gi|255578900|ref|XP_002530303.1| ATP binding protein, putative [Ricinus communis]
gi|223530159|gb|EEF32070.1| ATP binding protein, putative [Ricinus communis]
Length = 244
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 101/186 (54%), Gaps = 7/186 (3%)
Query: 37 PKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKF 96
PK+P +F LR G PR LWR K+ + EA+ I LK K +L +
Sbjct: 20 PKTP--NFKTSFVTCSLR----GGPRKPLWRSKR-VSTEAIQAIQSLKLAKSSNPRLHQV 72
Query: 97 IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156
T + RLLK D++ VL L++Q E LA+K+F+ ++K+ WY+PD +Y +I L +
Sbjct: 73 FNTKLSRLLKTDLLDVLEILQKQNELDLALKVFEFVQKEIWYKPDLTLYYGMIEMLGKNK 132
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
A + + KE L PD++ + E+I +LK G+ AM +Y M +S P++L F
Sbjct: 133 MTEMAEGYFSKLEKEGLKPDTRAFNEMIGAYLKVGTTEKAMEMYGRMKESGCVPDKLTFV 192
Query: 217 ILLKGL 222
IL++ L
Sbjct: 193 ILIRNL 198
>gi|297744458|emb|CBI37720.3| unnamed protein product [Vitis vinifera]
Length = 208
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/164 (34%), Positives = 92/164 (56%), Gaps = 2/164 (1%)
Query: 60 RPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+ R L RG+ L EA+ + LKR K DE L++ ++ V RLLK+D++AVL +L Q
Sbjct: 6 QNRKPLQRGRNL-SIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLNQ 64
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQ 178
E +LA+K+FD +RK+ WY+P +Y ++I L G + + ++KE L +++
Sbjct: 65 NECLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELETE 124
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ ++R + AM ++ M S P + FRIL+KGL
Sbjct: 125 GFNALLRTLIDFDMTGPAMECFQLMKTSGCEPNKSSFRILIKGL 168
>gi|225428340|ref|XP_002279994.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46870
[Vitis vinifera]
Length = 246
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Query: 62 RGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEE 121
R L RG+ L EA+ + LKR K DE L++ ++ V RLLK+D++AVL +L Q E
Sbjct: 46 RKPLQRGRNL-SIEAIQAVQALKRAKRDESSLERVFESKVRRLLKLDMIAVLKQLLNQNE 104
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTY 180
+LA+K+FD +RK+ WY+P +Y ++I L G + + ++KE L +++ +
Sbjct: 105 CLLALKVFDDVRKEYWYKPQVSLYAEMIRVLGSNGLFEQVHLLLSYLKKETGLELETEGF 164
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++R + AM ++ M S P + FRIL+KGL
Sbjct: 165 NALLRTLIDFDMTGPAMECFQLMKTSGCEPNKSSFRILIKGL 206
>gi|224092960|ref|XP_002309772.1| predicted protein [Populus trichocarpa]
gi|222852675|gb|EEE90222.1| predicted protein [Populus trichocarpa]
Length = 241
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 97/165 (58%), Gaps = 2/165 (1%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
G+PR LWR K+L EA+ VI LK + +L++ + + RLLK D++ L L+
Sbjct: 34 GKPRPPLWRAKRL-STEAIQVIQSLKLARSSTPRLEEVFNSKLSRLLKTDLLDTLAVLQN 92
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDS 177
Q E LA+K+F+ +RK+ WY+PD +Y +I + R + A + + + KE+ L PD+
Sbjct: 93 QNELDLALKVFEFVRKEVWYKPDILLYHAMIQMVGRNKMVEMAEEFFGKLEKEEGLKPDT 152
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +TE+I +L+ G AM YE M S P++L FRIL++ L
Sbjct: 153 RAFTEMIGAYLQVGMIDKAMETYERMKASGCDPDKLTFRILIRNL 197
>gi|449454430|ref|XP_004144958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449473007|ref|XP_004153757.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449517150|ref|XP_004165609.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 249
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 2/162 (1%)
Query: 62 RGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEE 121
R L +G+ L EA+ + LKR K D ++L + + + RLLK D++AVL EL RQ E
Sbjct: 49 RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNE 107
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTY 180
LA+K+F+ +RK+ WY+P +Y D+I LA G + M+ E DL P+ +
Sbjct: 108 CSLALKVFEDVRKEHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGF 167
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++ + AM Y M P++ FRI++KGL
Sbjct: 168 NALLKALVSHNLGELAMESYYLMKDVGCEPDKASFRIVIKGL 209
>gi|449469204|ref|XP_004152311.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449484870|ref|XP_004157003.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 245
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 50 ILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDI 109
I GLR+ + RP G ++ EA+ + LK K K++ I T + RLLK D+
Sbjct: 39 ICGLRKGSN-RPLGL----SRVPSNEAIQAVQSLKLAKSTS-KMEDVINTKLGRLLKADL 92
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
L EL+RQ E L++++F ++ ++W++PD +Y +I+ + + + A +V+ +R
Sbjct: 93 FDALSELQRQNELELSLQVFKFMQNEEWFEPDLRLYHGMIMLMGKNKMIEMAEEVFHKLR 152
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K+ L PD++ + E++ +L+ A+ Y MI S P+EL F+IL+K L
Sbjct: 153 KDGLEPDTRAFNEMMGAYLQVDMIERAVETYRLMIASGCTPDELTFKILIKNL 205
>gi|388510802|gb|AFK43467.1| unknown [Lotus japonicus]
Length = 259
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 97/173 (56%), Gaps = 6/173 (3%)
Query: 50 ILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDI 109
+ GLR R R ++I KE + VI LK K E+KL + + + RLL D
Sbjct: 50 VCGLRASFRKR------RPSRVISKEGIQVIHALKLAKSSEQKLYQVLNEKLTRLLNADA 103
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ +L EL+RQ E L++K+F+ +R++ + +Y D+I+ L R + EA +++ +
Sbjct: 104 LDLLGELQRQNELHLSLKVFNFLREEPGFDALLPLYSDMILLLGRNKMVGEAEELFSQVV 163
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ L PD++ +TE+I +L+ G+ AM +Y M S P++L F IL++ L
Sbjct: 164 EKGLKPDTRMFTEMIGVYLQGGNTEKAMELYRSMKASGCSPDKLTFTILIRSL 216
>gi|302769874|ref|XP_002968356.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
gi|300164000|gb|EFJ30610.1| hypothetical protein SELMODRAFT_67614 [Selaginella moellendorffii]
Length = 161
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 96/161 (59%), Gaps = 6/161 (3%)
Query: 65 LWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETIL 124
LWRGKK +G EAL LK K D + LQ+ + + V RL+K+D++A+L L+R +E L
Sbjct: 1 LWRGKKDLGSEALQAAAALKLAKRDSKALQEVLASKVGRLVKLDLLALLHALQRHDEVDL 60
Query: 125 AVKI------FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
A ++ F+ RK+ WY+P +Y+D++ +LAR G++ ++E++++E P
Sbjct: 61 AFQVSPCFLVFERARKEVWYKPSVPLYRDMLKSLARNGRVEGVYSLFETIKQEKAEPHIA 120
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+TEVI F+ G DA+ ++E M +S PP +R ++
Sbjct: 121 MFTEVIDIFVGSGRFRDALKVFEMMKESEAPPNVRTYRTII 161
>gi|297811021|ref|XP_002873394.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
gi|297319231|gb|EFH49653.1| hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp.
lyrata]
Length = 745
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 13/202 (6%)
Query: 51 LGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEK---------LQKFIKTHV 101
+G++ + R L RG+ ++ EA+ + LKR + + I +
Sbjct: 524 MGIKMRDRSKNRKPLQRGR-MLSIEAIQAVQALKRANPLLPPPSPSSSSALVDRVIISKF 582
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
RLLK D+VAVL EL RQ E LA+K+F+ IRK+ WY+P +Y D+I +A M E
Sbjct: 583 RRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEV 642
Query: 162 MQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
++ +M+ E L D + + ++ L M+ Y M P+ FRIL+
Sbjct: 643 NYLYSAMKSEKGLMADIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRILVL 702
Query: 221 GLLPHP--LLRSKVKKDFEELF 240
GL + L + V+KD E +
Sbjct: 703 GLESNGEMSLSAIVRKDAHEYY 724
>gi|357164141|ref|XP_003579962.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Brachypodium distachyon]
Length = 233
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 3/158 (1%)
Query: 67 RGKKLIGKEALFVILGLKRFKDDEEKLQKFIKT--HVLRLLKMDIVAVLIELERQEETIL 124
RG+ L EA+ + LKR + T + RLLK D+VAV EL Q E +L
Sbjct: 42 RGRYL-STEAIQAVQSLKRATLSGTPAAGAVATDTKLRRLLKADMVAVFRELAAQGEALL 100
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+ IRK+ WY+P + Y DLI LA G ++E + +++E L PD+ + ++
Sbjct: 101 ALKVFEEIRKEHWYKPRLFWYVDLITVLASKGLLSEVSKACSYLKREQLEPDTDGFNLLL 160
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ L M+ + M P+ + +R L+ GL
Sbjct: 161 KTLLDAEFTQLTMDCFRLMKLWNSEPDRITYRTLINGL 198
>gi|302765018|ref|XP_002965930.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
gi|300166744|gb|EFJ33350.1| hypothetical protein SELMODRAFT_67616 [Selaginella moellendorffii]
Length = 161
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/161 (35%), Positives = 95/161 (59%), Gaps = 6/161 (3%)
Query: 65 LWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETIL 124
LWRGKK +G EAL LK K D + LQ+ + + V RL+K+D++A+L L+R +E L
Sbjct: 1 LWRGKKDLGSEALQAAAALKLAKRDSKALQEVLASKVGRLVKLDLLALLHALQRHDEVDL 60
Query: 125 AVKI------FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
A ++ F+ RK+ WY+P +Y+D++ +LAR G++ ++E++++E P
Sbjct: 61 AFQVSPCFLVFERARKEVWYKPSVPLYRDMLKSLARNGRVEGVYSLFETIKQEKAEPHIA 120
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+TEVI F+ G DA+ ++E M S PP +R ++
Sbjct: 121 MFTEVIDIFVGSGRFRDALKVFEMMKDSEAPPNVRTYRTII 161
>gi|302792405|ref|XP_002977968.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
gi|300153989|gb|EFJ20625.1| hypothetical protein SELMODRAFT_417822 [Selaginella moellendorffii]
Length = 478
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIR 133
+EA+ + L+ K+D +K+ +++T+ R+LK D++ VL L + E +A+K+F II
Sbjct: 288 QEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEEIALKVFRIIE 347
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ WY+P++Y+Y++LI+ L + +E + M ++ P+ + V+
Sbjct: 348 KESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDANEMHPNRHMFVPVMSACFDLFDF 407
Query: 194 ADAMNIYEDMIKSPD-PPEELPFRILLKGL 222
+ Y M+K+P L +R L+K L
Sbjct: 408 QNLERFYSRMLKTPGLHLHHLVYRGLIKKL 437
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 66 WR--GKKLI-GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEET 122
WR GK++ KEAL ++ +KR ++ +++ +K R+++ D + VL+ L+ Q++
Sbjct: 42 WRPEGKRMFPSKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKDQDQV 101
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
++IFD+IR++ WY+P A +++ ++ + + ++ + ++ +++ E L P +
Sbjct: 102 DRVLEIFDVIREEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEKLEPSEEMLVF 161
Query: 183 VIRGFLKDGSPADAMNIYE 201
+R F + A M IYE
Sbjct: 162 PVRKFASLANFAKCMEIYE 180
>gi|302766717|ref|XP_002966779.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
gi|300166199|gb|EFJ32806.1| hypothetical protein SELMODRAFT_407937 [Selaginella moellendorffii]
Length = 468
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 81/150 (54%), Gaps = 1/150 (0%)
Query: 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIR 133
+EA+ + L+ K+D +K+ +++T+ R+LK D++ VL L + E +A+K+F II
Sbjct: 278 QEAMQTVTALRHRKNDPDKVDSYLETNAPRMLKKDMLCVLTILRKHREEEIALKVFRIIE 337
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ WY+P++Y+Y++LI+ L + +E + M ++ P+ + V+
Sbjct: 338 KESWYEPNSYLYRELILILTNLRRFDELWTTMDEMDANEMHPNRHMFVPVMSACFDLFDF 397
Query: 194 ADAMNIYEDMIKSPD-PPEELPFRILLKGL 222
+ Y M+K+P L +R L+K L
Sbjct: 398 QNLERFYNRMLKTPGLHLHHLVYRGLIKKL 427
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 66 WR--GKKLI-GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEET 122
WR GK++ KEAL ++ +KR ++ +++ +K R+++ D + VL+ L+ Q++
Sbjct: 42 WRPEGKRMFPSKEALALVTEIKRAARGKKDVERLLKDRSARMMRYDYLIVLLTLKDQDQV 101
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
++IFD+IR++ WY+P A +++ ++ + + ++ + ++ +++ E L P +
Sbjct: 102 DRVLEIFDVIREEMWYKPSAQLFQSIMEFVIKHDRIEDWKRLLKNLHDEKLEPSEEMLVF 161
Query: 183 VIRGFLKDGSPADAMNIYE 201
+R F + A M IYE
Sbjct: 162 PVRKFASLANFAKCMEIYE 180
>gi|38344476|emb|CAE05491.2| OSJNBa0022H21.11 [Oryza sativa Japonica Group]
Length = 257
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAV EL Q E +LA+++F+ IRK+ WY+P +Y D++ LA G +E
Sbjct: 81 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 140
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+V +++E L PD++ + +++ L M+ + M P+ + +R L+KGL
Sbjct: 141 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 200
>gi|116310293|emb|CAH67311.1| OSIGBa0106G07.7 [Oryza sativa Indica Group]
Length = 259
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAV EL Q E +LA+++F+ IRK+ WY+P +Y D++ LA G +E
Sbjct: 83 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 142
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+V +++E L PD++ + +++ L M+ + M P+ + +R L+KGL
Sbjct: 143 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 202
>gi|115458948|ref|NP_001053074.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|113564645|dbj|BAF14988.1| Os04g0475500 [Oryza sativa Japonica Group]
gi|125590727|gb|EAZ31077.1| hypothetical protein OsJ_15174 [Oryza sativa Japonica Group]
Length = 228
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAV EL Q E +LA+++F+ IRK+ WY+P +Y D++ LA G +E
Sbjct: 52 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 111
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+V +++E L PD++ + +++ L M+ + M P+ + +R L+KGL
Sbjct: 112 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 171
>gi|125548701|gb|EAY94523.1| hypothetical protein OsI_16297 [Oryza sativa Indica Group]
Length = 228
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 69/120 (57%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAV EL Q E +LA+++F+ IRK+ WY+P +Y D++ LA G +E
Sbjct: 52 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPKLLLYVDIVTVLASKGLRSEVD 111
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+V +++E L PD++ + +++ L M+ + M P+ + +R L+KGL
Sbjct: 112 KVCSYLKREQLEPDTEGFNVLLKALLDAEFTQLTMDCFRLMKLWDSDPDRITYRTLIKGL 171
>gi|255546690|ref|XP_002514404.1| conserved hypothetical protein [Ricinus communis]
gi|223546501|gb|EEF48000.1| conserved hypothetical protein [Ricinus communis]
Length = 248
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Query: 62 RGSLWRGKKLIGKEALFVILGLKR--FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
R L +G+ L E++ + LKR + L ++ RLLK+D+++VL EL RQ
Sbjct: 51 RKQLQKGRNL-SIESIQAVQSLKRAYYFSTNSNLDSVFRSKFSRLLKLDMLSVLRELLRQ 109
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN--EAMQVWESMRKEDLFPDS 177
+LA+K+F IRK+ WY+P +Y D+I A+A G E + ++ + P++
Sbjct: 110 NHCLLALKVFKDIRKEYWYKPQVSLYDDMIKAMASNGYFEQVELLCIYLKTETNLIEPET 169
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ + + AM Y M P+ L FRIL+ GL
Sbjct: 170 DAFNALFTTLITFNLSGFAMEFYGLMKAVKCEPDRLTFRILINGL 214
>gi|326488207|dbj|BAJ89942.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 231
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 5/194 (2%)
Query: 33 LAFKPK--SPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDE 90
LAF P +P V + G+ R RG+ L EA+ + LKR
Sbjct: 6 LAFSPHRLTPSAASVRRSTSSTITMRDRGKNRKPTQRGRYL-STEAIQAVQSLKRATLSG 64
Query: 91 EKLQKFIKT--HVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
+ T + RLLK D+VAV EL Q E LA+K+F+ IRK+ WY+P + Y DL
Sbjct: 65 APAAGAVATDPKLRRLLKADMVAVFRELAAQGEAHLALKVFEEIRKEHWYKPRLFWYVDL 124
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
I LA G +E + +++E L PD+ + +++ L M+ + M
Sbjct: 125 ITVLASKGLRSEVGKACSYLKREQLEPDTDGFNLLLKTLLDAEFTQLTMDCFRLMKLWDS 184
Query: 209 PPEELPFRILLKGL 222
P+ + L+KGL
Sbjct: 185 EPDRTTYITLVKGL 198
>gi|414586768|tpg|DAA37339.1| TPA: hypothetical protein ZEAMMB73_755953 [Zea mays]
Length = 209
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAV EL Q E +LA+++F+ IRK+ WY+P Y DL+ LA G E
Sbjct: 51 RLLKADMVAVFRELAAQGEALLALQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRTEVD 110
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +++E L PD++ + +++ L G ++ + M P+ + + L+KGL
Sbjct: 111 RACSYLKREQLEPDTEGFNLLLKALLDSGFTQLTLDCFRLMKLWDSDPDRITYTTLIKGL 170
>gi|302797623|ref|XP_002980572.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
gi|300151578|gb|EFJ18223.1| hypothetical protein SELMODRAFT_444589 [Selaginella moellendorffii]
Length = 1048
Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 41 IVDFVAHEPILGLRQYHDGR--PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIK 98
+ F E GLR R PR + RG+KL G+EA+ + LKR K E++++ +K
Sbjct: 187 VAGFNVAERKSGLRVLCSTRSLPRLPIMRGRKL-GREAILTVQSLKRAKGVREEMEQVLK 245
Query: 99 THVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158
+ V RLLK D++ VL EL RQ + +LA + Q PD +Y +L+ A R +
Sbjct: 246 SQVSRLLKTDMLEVLRELHRQNDCVLAYE-----ELQGEMLPDGLVYTELMTAYLRCERP 300
Query: 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
N+A+ ++ M++ L + +T+T + + K G
Sbjct: 301 NDAIDTFQEMKQLGLTVELKTFTTLAKWLEKKG 333
>gi|242076196|ref|XP_002448034.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
gi|241939217|gb|EES12362.1| hypothetical protein SORBIDRAFT_06g019940 [Sorghum bicolor]
Length = 216
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 4/167 (2%)
Query: 59 GRPRGSLWRGKKLIGKEALFVILGLKRFKDDEE---KLQKFIKTHVLRLLKMDIVAVLIE 115
G+ R RG+ L EA+ + LKR ++ + RLLK D+VAV E
Sbjct: 5 GKNRKPTQRGRYL-STEAIQAVQSLKRAARRSAPSASTAATVEPKLRRLLKTDMVAVFRE 63
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L Q E +LA ++F+ IRK+ WY+P Y DL+ LA G E + ++KE L P
Sbjct: 64 LAAQGEALLAFQVFEEIRKEHWYKPRLLWYVDLVTVLASKGLRIEVDRACSYLKKEQLEP 123
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
D++ + +++ L G M+ + M P+ + + L+KGL
Sbjct: 124 DTEGFNLLLKELLDAGFTQLTMDCFRLMKLWDSDPDRITYTTLIKGL 170
>gi|21618227|gb|AAM67277.1| unknown [Arabidopsis thaliana]
Length = 262
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 93 LQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152
L + I + RLLK D+VAVL EL RQ E LA+K+F+ IRK+ WY+P +Y D+I +
Sbjct: 91 LDRVIISKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVM 150
Query: 153 ARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
A M E ++ +M+ E L + + + ++ L M+ Y M P+
Sbjct: 151 ADNSLMEEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPD 210
Query: 212 ELPFRILLKGLLPHP--LLRSKVKKDFEELFPEKHAY-DPPEEI 252
FR+L+ GL + L + V++D E + E + + EEI
Sbjct: 211 RASFRVLVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEI 254
>gi|302790153|ref|XP_002976844.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
gi|300155322|gb|EFJ21954.1| hypothetical protein SELMODRAFT_443353 [Selaginella moellendorffii]
Length = 566
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Query: 41 IVDFVAHEPILGLRQYHDGR--PRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIK 98
+ F E GLR R PR + RG+KL G+EA+ + LKR K E++++ +K
Sbjct: 187 VAGFNVAEGKSGLRVLCSTRSLPRLPIMRGRKL-GREAILTVQSLKRAKGVREEMEQVLK 245
Query: 99 THVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158
+ V RLLK D++ VL EL RQ + +LA + Q PD +Y +L+ A R +
Sbjct: 246 SQVSRLLKTDMLEVLRELHRQNDCVLAYEEL-----QGEMLPDGLVYTELMTAYLRCERP 300
Query: 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
N+A+ ++ M++ L + +T+T + + K G +A
Sbjct: 301 NDAIDTFQEMKQLGLTVELKTFTTLAKWLEKKGLGEEA 338
>gi|388507400|gb|AFK41766.1| unknown [Medicago truncatula]
Length = 246
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/183 (31%), Positives = 100/183 (54%), Gaps = 9/183 (4%)
Query: 46 AHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLL 105
A + GLR + +P + I KE++ VI LK K+ EEKL + +K+ +LRLL
Sbjct: 29 ATTVVCGLRSCKNKKPPSMV------ISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLL 82
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY---IYKDLIIALARTGKMNEAM 162
K D++ VL EL RQ + L++K+ + I + D +Y D I+ L + + +A
Sbjct: 83 KPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAGYDKLLLPLYSDTILLLGKNKMIEKAE 142
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++ + ++ L PD++ + E+I +L+ G+ AM +Y M S P+ L F IL++ L
Sbjct: 143 EMFYEVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDALTFTILIRNL 202
Query: 223 LPH 225
+ +
Sbjct: 203 MNN 205
>gi|357454525|ref|XP_003597543.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486591|gb|AES67794.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 246
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 9/181 (4%)
Query: 46 AHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLL 105
A + GLR + +P + I KE++ VI LK K+ EEKL + +K+ +LRLL
Sbjct: 29 ATTVVCGLRSCKNKKPPSMV------ISKESVQVIHALKLAKNSEEKLNQVLKSKLLRLL 82
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY---IYKDLIIALARTGKMNEAM 162
K D++ VL EL RQ + L++K+ + I + D +Y D I+ L + + +A
Sbjct: 83 KPDVLIVLAELHRQNQLHLSLKVLEFIISDEEAGYDKLLLPLYSDTILLLGKNKMIEKAE 142
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++ + ++ L PD++ + E+I +L+ G+ AM +Y M S P+ L F IL++ L
Sbjct: 143 EMFYEVVEKGLKPDTRLFNEMIGVYLQVGNTEKAMEVYRSMKASGCLPDALTFTILIRNL 202
Query: 223 L 223
+
Sbjct: 203 M 203
>gi|22531104|gb|AAM97056.1| putative protein [Arabidopsis thaliana]
gi|30023740|gb|AAP13403.1| At5g09320 [Arabidopsis thaliana]
Length = 262
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 4/154 (2%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAVL EL RQ E LA+K+F+ IRK+ WY+P +Y D+I +A M E
Sbjct: 101 RLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVN 160
Query: 163 QVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ +M+ E L + + + ++ L M+ Y M P+ FR+L+ G
Sbjct: 161 YLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLG 220
Query: 222 LLPHP--LLRSKVKKDFEELFPEKHAY-DPPEEI 252
L + L + V++D E + E + + EEI
Sbjct: 221 LESNGEMGLSAIVRQDAHEYYGESLEFIEEDEEI 254
>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
Group]
Length = 506
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 66/109 (60%), Gaps = 3/109 (2%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ + D QPD Y++ LI A A+ GK++EAM V+ MR++ L P+ TY+ +I G+
Sbjct: 360 LFDLMVQSDM-QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGY 418
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
K +A+ ++++M+ + P + + I+L+GL R+ K+F
Sbjct: 419 CKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTG--RTATAKEF 465
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ IY +I AL + M++AM+V + M K + P+ TYT ++ GF G +A+
Sbjct: 231 PNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290
Query: 200 YEDMIKSPDPPEELPF 215
E M + P + +
Sbjct: 291 LEKMCSNGVEPNVVTY 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ +P+ Y + L + G+ EA ++++SM K L PD TY+ ++ G+ +G+
Sbjct: 296 SNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALV 355
Query: 195 DAMNIYEDMIKSPDPPEELPFRILL 219
+ +++ M++S P+ F L+
Sbjct: 356 EMHGLFDLMVQSDMQPDHYVFNTLI 380
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+A L + + ++ A+++ D + K + P+ + Y L+ +G++ EA++ E M
Sbjct: 239 IIAALCKGQAMDK---AMEVHDRMVK-NGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKM 294
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ P+ TY+ + K+G +A I++ M+K P+ + LL G
Sbjct: 295 CSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHG 347
>gi|15242388|ref|NP_196494.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
gi|9955519|emb|CAC05458.1| putative protein [Arabidopsis thaliana]
gi|332003991|gb|AED91374.1| Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis
thaliana]
Length = 712
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
RLLK D+VAVL EL RQ E LA+K+F+ IRK+ WY+P +Y D+I +A M E
Sbjct: 551 RLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVN 610
Query: 163 QVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ +M+ E L + + + ++ L M+ Y M P+ FR+L+ G
Sbjct: 611 YLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLG 670
Query: 222 LLPHP--LLRSKVKKDFEELFPEK 243
L + L + V++D E + E
Sbjct: 671 LESNGEMGLSAIVRQDAHEYYGES 694
>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
Length = 506
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 64/109 (58%), Gaps = 3/109 (2%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ + D QPD Y++ LI A A+ GK++EAM V+ MR + L P+ TY +I G+
Sbjct: 360 LFDLMVQSDM-QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGY 418
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
K +A+ ++++M+ + P + + I+L+GL R+ K+F
Sbjct: 419 CKITRMENALALFQEMVSNGVSPNFITYNIMLQGLFRTG--RTGTAKEF 465
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V + M K + P+ TYT ++ GF G +A+
Sbjct: 231 PNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKF 290
Query: 200 YEDMIKSPDPPEELPF 215
E M + P + +
Sbjct: 291 LEKMCSNGVEPNVVTY 306
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ +P+ Y + L + G+ EA +++ SM K L PD TY+ ++ G+ +G+
Sbjct: 296 SNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALV 355
Query: 195 DAMNIYEDMIKSPDPPEELPFRILL 219
+ +++ M++S P+ F L+
Sbjct: 356 EMHGLFDLMVQSDMQPDHYVFNTLI 380
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+A L + + ++ A+++ D + K + P+ + Y L+ +G++ EA++ E M
Sbjct: 239 IIAALCKGQAMDK---AMEVHDRMVK-NGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKM 294
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ P+ TY+ + K+G +A I+ M+K P+ + LL G
Sbjct: 295 CSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHG 347
>gi|224102763|ref|XP_002312792.1| predicted protein [Populus trichocarpa]
gi|222849200|gb|EEE86747.1| predicted protein [Populus trichocarpa]
Length = 216
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 9/198 (4%)
Query: 62 RGSLWRGKKLIGKEALFVILGLK-RFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
R L +G+ L EA+ I LK + +D+ L + ++ RLLK D+ AVL EL RQ
Sbjct: 16 RKPLQKGRNL-SIEAIQTIQALKLAYNNDKSLLDQVFRSKFSRLLKFDMTAVLRELLRQN 74
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE---DLFPDS 177
+LA+K+F+ IR + WY+P +Y D+I +A G + E ++ + E DL +
Sbjct: 75 HCLLALKVFEDIRVEHWYKPKVLLYNDMIQVMASNGFIEEVQLLFRYLESEITGDLQFKT 134
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDM--IKSPDPPEELPFRILLKGL--LPHPLLRSKVK 233
+ +++ + M YE M + P+ F++L+ GL + L V+
Sbjct: 135 DEFNQLLATLISFKLGGLVMECYEWMKSVVVGCEPDRSTFKLLVNGLESIGEFELSVVVR 194
Query: 234 KDFEELFPEKHAYDPPEE 251
+D + + E ++ EE
Sbjct: 195 QDAYKFYGESLDFEAEEE 212
>gi|358248622|ref|NP_001240168.1| uncharacterized protein LOC100781412 [Glycine max]
gi|255642193|gb|ACU21361.1| unknown [Glycine max]
Length = 246
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 92/176 (52%), Gaps = 13/176 (7%)
Query: 50 ILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDI 109
I GLR + R R +++ KE++ VI LK + + L + RLLK D
Sbjct: 38 ICGLRSSYKARRR------TRILSKESIEVIHALKLARSPDHVLNAKLS----RLLKPDA 87
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ +L EL+RQ + L++K+F IR++ + +Y D+I+ L R +++ A +++
Sbjct: 88 LNLLDELQRQNQLHLSLKVFHFIREELGHDTLLQLYADMILLLGRNKRIDMAEELFSEAL 147
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK---SPDPPEELPFRILLKGL 222
++ L PD++ +E+I +L+ G AM IY M + P++ F IL++ L
Sbjct: 148 EKGLKPDTRLCSEMIGAYLQLGMADKAMQIYASMKEDWACSSSPDKFTFTILIRYL 203
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA Y LI L ++NEA +++ M + L PD TYT +I G+ K+G +A+N
Sbjct: 480 SPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALN 539
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK----VKKDFEELFPEKHAYD 247
++++MIK P+ + + +L+ GL R +K ++E P YD
Sbjct: 540 LHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYD 592
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + + G +N AM+ ++ M L P+ TYT +I GF + G +A I
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++MI+S PP + + LL G
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNG 422
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++ +L+R +E F ++R + +P+ Y +I L R G++ E V
Sbjct: 244 VIGAYCKLKRIDEA------FKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLA 297
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M ++ PD TY ++ G+ K G+ A+ ++ +M+++ PP+ + + L+ +
Sbjct: 298 EMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMC 354
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI G MNEA QV+ESM K + P+ Y +I G +DG+ A +Y++M+
Sbjct: 609 LIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFG 668
Query: 208 DPPEELPFRILLKGL 222
P + L+K L
Sbjct: 669 FIPHTVTIIALVKAL 683
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ L + R EET + D + + PD Y L+ + G ++A+ + M
Sbjct: 279 VINGLCRVGRIEETSGVLAEMD----RKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEM 334
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ L PD TYT +I K G+ AM ++ M P + + L+ G
Sbjct: 335 LRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGF 388
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I R +++ A Q+ M ++ + PD+ TY+ +I+G + +A +
Sbjct: 445 SPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACD 504
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++++M+ P+E + L+ G
Sbjct: 505 LFQEMLNKSLLPDEFTYTSLING 527
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A +I+D +IR + P Y L+ +G+M EA+ + M + L PD +Y+ +
Sbjct: 397 AYRIWDEMIRS--GFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTI 454
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I GF + A + +M++ P+ + + L++GL
Sbjct: 455 IAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLC 494
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI + G +NEA+ + + M K+ PD+ TY +I G K +A +
Sbjct: 516 PDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAKRL 575
Query: 200 ---------------YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
Y+ +I+S E L+KG L+ ++ + FE + K
Sbjct: 576 LLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLM-NEADQVFESMI--KR 632
Query: 245 AYDPPEEIF 253
P E ++
Sbjct: 633 NQKPNEAVY 641
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ FD + + +P+ Y LI ++ G M+EA ++W+ M + P TY ++
Sbjct: 362 AMEFFDQMHVRGL-RPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALL 420
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G +A+ + M P+ + + ++ G
Sbjct: 421 NGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFC 459
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLK----MDIVA---VLIELERQEETILAVKIFD 130
+ IL LK DD+ Q H++ K +D+VA V+ L R+ + A +FD
Sbjct: 174 YTIL-LKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFD 232
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
+ + PD Y +I AL++T M++A QV+ M K + PD YT ++ G+
Sbjct: 233 AMLDRGP-SPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSS 291
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPE 250
G P +A+ I++ M + P+ + + L+ L + ++ +K F+ L K + P
Sbjct: 292 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNG-KSTEARKIFDSLV--KRGHKPDS 348
Query: 251 EIFGKL 256
+G L
Sbjct: 349 TTYGTL 354
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+++ L + + A ++F + K + PD +Y L+ +GK EA+ +++ M +
Sbjct: 248 SIISALSKTQAMDKATQVFTRMVK-NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCR 306
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ PD TYT ++ K+G +A I++ ++K P+ + LL G
Sbjct: 307 HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHG 357
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L ++ I A +FD++ + +P+ Y LI GKM+EAM++ M
Sbjct: 493 AIMGNLCKKGRVIEAKNLFDLMVRI-GIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 551
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P TY +I G+ ++G D + + +M P + + +LL+GL
Sbjct: 552 NGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGL 603
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ D++ K+ Q +I+ ++ A A+ K++EA+ V+ +MR++ L PD Y V+
Sbjct: 370 LLDLMMKKGM-QLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 428
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G DA++ + + P + F L+ GL
Sbjct: 429 CTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLC 464
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 89/186 (47%), Gaps = 12/186 (6%)
Query: 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLK----MDIVA---VLIELERQEETILAVKIFD 130
+ IL LK DD+ Q H++ K +D+VA V+ L R+ + A +FD
Sbjct: 173 YTIL-LKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLFD 231
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
+ + PD Y +I AL++T M++A QV+ M K + PD YT ++ G+
Sbjct: 232 AMLDRGP-SPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSS 290
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPE 250
G P +A+ I++ M + P+ + + L+ L + ++ +K F+ L K + P
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNG-KSTEARKIFDSLV--KRGHKPDS 347
Query: 251 EIFGKL 256
+G L
Sbjct: 348 TTYGTL 353
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+++ L + + A ++F + K + PD +Y L+ +GK EA+ +++ M +
Sbjct: 247 SIISALSKTQAMDKATQVFTRMVK-NGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCR 305
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ PD TYT ++ K+G +A I++ ++K P+ + LL G
Sbjct: 306 HGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHG 356
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L ++ I A +FD++ + +P+ Y LI GKM+EAM++ M
Sbjct: 492 AIMGNLCKKGRVIEAKNLFDLMVRI-GIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVF 550
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P TY +I G+ ++G D + + +M P + + +LL+GL
Sbjct: 551 NGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGL 602
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ D++ K+ Q +I+ ++ A A+ K++EA+ V+ +MR++ L PD Y V+
Sbjct: 369 LLDLMMKKGM-QLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDIL 427
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G DA++ + + P + F L+ GL
Sbjct: 428 CTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLC 463
>gi|359482912|ref|XP_003632859.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62350-like [Vitis vinifera]
gi|297743240|emb|CBI36107.3| unnamed protein product [Vitis vinifera]
Length = 230
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 13/199 (6%)
Query: 31 SFLAFKP-KSPI--VDFVAHEPI-LGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKR- 85
+F F P K P+ + ++ PI G R RG L +G+ ++ EA+ I LKR
Sbjct: 9 NFALFSPIKKPVQTITTTSYTPIRCGPRD-----NRGPLMKGR-VLSIEAIQAIQSLKRA 62
Query: 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
+ D K+ F+ + RL+K D++A L EL RQ++ LA+++F +R + WY+ + +Y
Sbjct: 63 HRGDPTKIDDFLSKTLSRLVKADLLATLNELLRQDQCDLALRVFSAVRSELWYKTELSLY 122
Query: 146 KDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
DL+ ALAR G E ++ + E + D + +++ + + IY M
Sbjct: 123 ADLVSALARKGMKEEIDRLICDLEGEGSVRCDDKGIVRLVKAVIAAERRDSTVRIYGLMK 182
Query: 205 KS-PDPPEELPFRILLKGL 222
+S +E R+L +GL
Sbjct: 183 RSGCGGGDEYVGRVLSRGL 201
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 49/90 (54%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ PD Y+Y LI A A+ GK++EAM V+ MR++ L PD+ TY VI K G
Sbjct: 334 RNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVE 393
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
DAM +E MI P + + L+ GL
Sbjct: 394 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 423
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+FD++ + +PD Y LI GKM+EAM++ M L P++ TY +I G
Sbjct: 467 KLFDLMVRI-GVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLING 525
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ K DA+ ++++M S P+ + + I+L+GL
Sbjct: 526 YCKISRMGDALVLFKEMESSGVSPDIITYNIILQGL 561
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 17/122 (13%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I AL + M++AM+V SM K + P+ +TYT ++ G+ G P +A+
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIG 287
Query: 199 ----IYEDMIKSPDP--PEELPFRILLKGLLP-------HPLLRSKVKKDFEELFPEKHA 245
+ D ++ PD P+ + LL+G H LL V+ + P+ +
Sbjct: 288 FLKKVRSDGVE-PDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNG---IHPDHYV 343
Query: 246 YD 247
Y+
Sbjct: 344 YN 345
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y+ LI + +M +A+ +++ M + PD TY +++G + A A
Sbjct: 513 KPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 572
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + +S E + I+L GL + L
Sbjct: 573 LYVRITESGTQIELSTYNIILHGLCKNKL 601
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F +R+Q PDA Y +I L ++G++ +AM +E M E L P + Y +I
Sbjct: 360 AMLVFSKMRQQGL-NPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLI 418
Query: 185 RGFL 188
G
Sbjct: 419 HGLC 422
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALC 242
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ +Y LI L R GK++EA ++ M + P++ TY+ +I+GF K G+ A+
Sbjct: 395 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 454
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++++M K+ P E+ + +L+ GL LR
Sbjct: 455 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 485
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A+ Y LI +TG +A++VW+ M K + P+ Y+ +I G +DG +AM +
Sbjct: 431 PNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMM 490
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M+ P+ + + ++ GL + +K F E+ ++ P
Sbjct: 491 WTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKL-FNEMLCQESDSQP 538
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++++ + K + P+ Y LI L GK+ EAM +W M L PD Y+ +I
Sbjct: 452 AIRVWKEMAKNNCV-PNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI 510
Query: 185 RGFLKDGSPADAMNIYEDMI--KSPDPPEELPFRILLKGLL 223
G GS + ++ +M+ +S P+ + + ILL+ L
Sbjct: 511 HGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALC 551
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + Q +PD + Y L+ L + +++EA+ + + M+ E FP S T+ +I
Sbjct: 207 AIEVFREMAIQKC-EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLI 265
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G + ++M P E+ + ++ GL
Sbjct: 266 NGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L GK+++A+ + + M P+ TY +I G +K G D +++
Sbjct: 291 PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHL 350
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + E + L+ GL
Sbjct: 351 LSSLEERGHHANEYAYSTLISGLF 374
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y +I L G + ++++ M ++ D PD TY ++R K S + A
Sbjct: 500 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHA 559
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+++ M+ P+ + I L L
Sbjct: 560 IDLLNSMLDRGCNPDLITCNIFLNAL 585
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ +Y LI L R GK++EA ++ M + P++ TY+ +I+GF K G+ A+
Sbjct: 379 QPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIR 438
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++++M K+ P E+ + +L+ GL LR
Sbjct: 439 VWKEMAKNNCVPNEICYSVLIHGLCEDGKLR 469
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A+ Y LI +TG +A++VW+ M K + P+ Y+ +I G +DG +AM +
Sbjct: 415 PNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMM 474
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M+ P+ + + ++ GL + +K F E+ ++ P
Sbjct: 475 WTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKL-FNEMLCQESDSQP 522
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++++ + K + P+ Y LI L GK+ EAM +W M L PD Y+ +I
Sbjct: 436 AIRVWKEMAKNNCV-PNEICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMI 494
Query: 185 RGFLKDGSPADAMNIYEDMI--KSPDPPEELPFRILLKGLL 223
G GS + ++ +M+ +S P+ + + ILL+ L
Sbjct: 495 HGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALC 535
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + Q +PD + Y L+ L + +++EA+ + + M+ E FP S T+ +I
Sbjct: 191 AIEVFREMAIQKC-EPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLI 249
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G + ++M P E+ + ++ GL
Sbjct: 250 NGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L GK+++A+ + + M P+ TY +I G +K G D +++
Sbjct: 275 PNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHL 334
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + E + L+ GL
Sbjct: 335 LSSLEERGHHANEYAYSTLISGLF 358
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y +I L G + ++++ M ++ D PD TY ++R K S + A
Sbjct: 484 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISHA 543
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+++ M+ P+ + I L L
Sbjct: 544 IDLLNSMLDRGCNPDLITCNIFLNAL 569
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K PD Y Y L+ LARTG ++EA+ M++ PD +Y ++
Sbjct: 495 AINMFDEMNKLGC-APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K G P AM + +M +S P+ + + +L G L H + + K EE+
Sbjct: 554 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL-GALSHAGMFEEAAKLMEEMNTLGF 612
Query: 245 AYD 247
YD
Sbjct: 613 EYD 615
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R Q + +PD + Y +LI L + G+++EA + M++E PD+ +I
Sbjct: 284 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMI 342
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G DAM ++++M P + + ++K L S+V FE +
Sbjct: 343 NFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 397
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEV 183
A+ IF I+ + QP A Y +II L G+ + +++ M E FPD+ TY+ +
Sbjct: 178 AIAIFYQIKTRKC-QPTAQAYNSMIIMLMHEGQYGKVHELYNEMSTEGHCFPDTMTYSAL 236
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
I F K G A + +M ++ P + +L+
Sbjct: 237 ISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLI 272
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ QP IY LI + ++ A+ ++E MR + PD TYTE+IRG K G
Sbjct: 257 KENGMQPTTKIYTMLITLFFKLDDVHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRI 316
Query: 194 ADAMNIYEDMIKSPDPPEEL 213
+A + + +M + P+ +
Sbjct: 317 DEAYHFFYEMQREGCRPDTV 336
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G+ + A Q+ M++ + P ++ YT +I F K A+++
Sbjct: 228 PDTMTYSALISAFCKLGRRDSATQLLNEMKENGMQPTTKIYTMLITLFFKLDDVHGALSL 287
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P+ + L++GL
Sbjct: 288 FEEMRHQYCRPDVFTYTELIRGL 310
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ +PD + ++I L + G++++AM++++ M P TY +I+ + S
Sbjct: 327 QREGCRPDTVVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSR 386
Query: 194 ADAM-NIYEDMIKSPDPPEELPFRILLKGLL 223
A + + +E M +S P + IL+ G
Sbjct: 387 ASEVPSWFERMKESGISPSSFTYSILIDGFC 417
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 3/144 (2%)
Query: 97 IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156
+K H L DI VL EL+RQ + +++F +KQ WY P++ +Y LI L R G
Sbjct: 1 MKKHPKPLSPFDITCVLTELQRQHDWRCTLEVFSWSKKQSWYCPNSRLYTRLIGFLGREG 60
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP---PEEL 213
+++ A +++ M E D TYT ++ + K +A+ ++ M +S +P P +
Sbjct: 61 RVHNATLLFQEMLLEKCQADQYTYTALVNAYGKAKMFEEALAVFSHMKESNEPNCQPNTV 120
Query: 214 PFRILLKGLLPHPLLRSKVKKDFE 237
L+ L+ L ++ F+
Sbjct: 121 TCNALIDALVKGGLYDQAIQVFFD 144
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 104/224 (46%), Gaps = 19/224 (8%)
Query: 12 PILASIVLQNLTKNPSKNFSFLAFK---PKSPIVDFVAHEPILGLRQYHDGRPRGSLWRG 68
P+L +++ +K FSF+ K P + + + H +L GR + ++
Sbjct: 353 PVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLC------GRAKAAMGVM 406
Query: 69 KKLIGKEAL-------FVILGLKRFK--DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+++ E + V+ GL R +D K+ + +++ L + V+ +
Sbjct: 407 RRMERAEVVPGVMTYGAVVDGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKL 466
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
E A +++D + +P+ +Y +I LAR GKM EA ++ M + P+ T
Sbjct: 467 GEVDRASRVWDTMVAAG-IKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMT 525
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
Y+ ++RG+ + G + A++ +EDM++ P + + +L+ GL
Sbjct: 526 YSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLC 569
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+A Y LI L G+ +AM VW+ M PD+ YT +I+GF G +
Sbjct: 555 TPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSGMVDAGLR 614
Query: 199 IYEDMIKSPDP-PEELPFRILLKGLL 223
++ DM+ D P+ + + +LL GLL
Sbjct: 615 LFYDMLARGDTHPDVICYNVLLDGLL 640
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 67 RGKKLIGKEALF--VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEE 121
R K L+ E +F VI G + + ++ + T V +K ++V A++ L R +
Sbjct: 445 RSKGLVPNEFVFSPVITGFCKL-GEVDRASRVWDTMVAAGIKPNVVLYSAMIDGLARCGK 503
Query: 122 TILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
A +F ++I + P+ Y ++ + G ++A+ WE M + P++ TY
Sbjct: 504 MTEAELLFREMIEAK--CVPNIMTYSSMVRGYFQIGDSSQALSFWEDMLRIGCTPNAVTY 561
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ +I G G DAM +++ M+ P+ + + ++KG
Sbjct: 562 SVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFC 604
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 63/118 (53%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++FD + K++ QP A IY L+ + GK+ EA+ + MR P TYTE+I
Sbjct: 250 AVRLFDEM-KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
RG K G DA +Y++M+K P+ ++L L + L RS K+ ELF E
Sbjct: 309 RGLGKSGRVEDAYGVYKNMLKDGCKPD-----VVLMNNLINILGRSDRLKEAVELFEE 361
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K PD Y Y LI + R M+EA ++ +M + PD ++ ++
Sbjct: 496 AMGLFNEMKKLGCI-PDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIIL 554
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G + G P AM ++ M S P+ + + +L G L L + K +E+ +
Sbjct: 555 NGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVL-GCLSRAGLFEEATKLMKEMNSKGF 613
Query: 245 AYD 247
YD
Sbjct: 614 EYD 616
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +Y +I + G+ NEAM ++ M+K PD Y +I G ++
Sbjct: 469 KENCGSSSVRVYAVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMM 528
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A +++ M ++ P+ I+L GL
Sbjct: 529 DEAFSLFRTMEENGCNPDINSHNIILNGL 557
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y Y +LI L ++G++ +A V+++M K+ PD +I + +A+ +
Sbjct: 299 PTVYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVEL 358
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+M P + + ++K L
Sbjct: 359 FEEMRLLNCTPNVVTYNTIIKSLF 382
Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 104 LLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR-TGKMNEAM 162
+L +++ +L +R +E AV++F+ +R + P+ Y +I +L +EA
Sbjct: 337 VLMNNLINILGRSDRLKE---AVELFEEMRLLNC-TPNVVTYNTIIKSLFEDKAPPSEAS 392
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
E M+K+ + P S TY+ +I GF K A+ + E+M + PP + L+
Sbjct: 393 SWLERMKKDGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI--- 449
Query: 223 LPHPLLRSKVKKDFEELFPE 242
+ L ++K + ELF E
Sbjct: 450 --NSLGKAKRYEAANELFQE 467
>gi|413953460|gb|AFW86109.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 240
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K PD Y Y L+ LARTG ++EA+ M++ PD +Y ++
Sbjct: 100 AINMFDEMNKLGC-APDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIIL 158
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K G P AM + +M +S P+ + + +L G L H + + K +E+
Sbjct: 159 NGLAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVL-GALSHAGMFEEASKLMKEMNTLGF 217
Query: 245 AYD 247
YD
Sbjct: 218 EYD 220
>gi|413953459|gb|AFW86108.1| hypothetical protein ZEAMMB73_051838 [Zea mays]
Length = 388
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K PD Y Y L+ LARTG ++EA+ M++ PD +Y ++
Sbjct: 100 AINMFDEMNKLG-CAPDVYAYNALMSGLARTGMIDEALSTMRRMQEHGCIPDINSYNIIL 158
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K G P AM + +M +S P+ + + +L G L H + + K +E+
Sbjct: 159 NGLAKTGGPHRAMEMLSNMKQSTVSPDVVSYNTVL-GALSHAGMFEEASKLMKEMNTLGF 217
Query: 245 AYD 247
YD
Sbjct: 218 EYD 220
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 52/85 (61%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD YIY ++I+ L + G++ EA Q+ MRK +FPD+ YT VI GF K G+ + A
Sbjct: 309 KPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACK 368
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M + P+ + + ++ G+
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGIC 393
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD +R++ PD Y +I + ++GKM EA +++ M + L PD TYT +I
Sbjct: 366 ACKLFDEMRRKK-IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALI 424
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G +A +++ M++ P + + L GL
Sbjct: 425 DGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLC 463
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ L + E + A ++ +RK + PD +Y +I + G ++ A ++++ MR++
Sbjct: 318 IILLLCKNGEVVEAEQLLRGMRKWGVF-PDNVVYTTVISGFCKLGNVSAACKLFDEMRRK 376
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ PD TYT VI G K G +A ++ +M+ P+E+ + L+ G
Sbjct: 377 KIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDG 426
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y Y ++ L + G + + +++ E M +PD+ TYT ++ + K G A A
Sbjct: 484 QPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHE 543
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ M+ P + F +L+ G +L
Sbjct: 544 LLRIMLNKRLQPTLVTFNVLMNGFCMSGML 573
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G+M EA V M ++ L P+ TYT + G K+G A
Sbjct: 414 EPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANE 473
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELFPEKHAYDPPEEIFG 254
+ +M + P + ++ GL + VK D +P+ Y + +
Sbjct: 474 LLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYC 533
Query: 255 KL 256
K+
Sbjct: 534 KM 535
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + L+ M +++++M + PDS TY +I+G K + +A +
Sbjct: 590 PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFL 649
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE-----LFPEKHAYD 247
+++M++ + L++G + +K FEE L EK YD
Sbjct: 650 HKEMVEKGYSVTAATYDALIRGFYKRKKF-VEARKLFEEMRKHGLVAEKDIYD 701
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L ++ E+T+ ++ D+ + PD Y L+ A + G+M +A ++ M
Sbjct: 493 IVNGLCKIGNIEQTVKLMEEMDLAG----FYPDTITYTTLMDAYCKMGEMAKAHELLRIM 548
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ L P T+ ++ GF G D + E M++ P F L+K
Sbjct: 549 LNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMK 600
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K PD Y Y L+ LARTG ++EA+ M++ PD +Y ++
Sbjct: 462 AINMFDEMNKLGC-APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 520
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K G P AM + +M +S P+ + + +L G L H + + K +E+
Sbjct: 521 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL-GALSHAGMFEEASKLMKEMNTLGF 579
Query: 245 AYD 247
YD
Sbjct: 580 EYD 582
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R Q + +PD + Y +LI L + G+++EA + M++E PD+ +I
Sbjct: 251 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI 309
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G DAM ++++M P + + ++K L S+V FE +
Sbjct: 310 NFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 364
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G+ + A+Q+ M++ + P ++ YT +I F K A+++
Sbjct: 195 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 254
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P+ + L++GL
Sbjct: 255 FEEMRHQYCRPDVFTYTELIRGL 277
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L R++ A+++ + + K+ QP IY LI + + A+ ++E M
Sbjct: 203 LISAFCKLGRRDS---AIQLLNEM-KEIGMQPTTKIYTMLIALFFKFNDAHGALSLFEEM 258
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
R + PD TYTE+IRG K G +A + + +M + P+ +
Sbjct: 259 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTV 303
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ +PD ++I L + G++++AM++++ M P TY +I+ + S
Sbjct: 294 QREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSR 353
Query: 194 ADAM-NIYEDMIKSPDPPEELPFRILLKGLL 223
A + + +E M +S P + IL+ G
Sbjct: 354 ASEVPSWFERMKESGISPSSFTYSILIDGFC 384
>gi|449448168|ref|XP_004141838.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
gi|449491766|ref|XP_004158997.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g46870-like [Cucumis sativus]
Length = 230
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 24/232 (10%)
Query: 26 PSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDG--RPRGSLWRGKKLIGKEALFVILGL 83
S + +FL + PI A P+ + G RG L +G+ L EA+ I L
Sbjct: 3 SSLHSTFLKSQISIPIPASTATSPVAVSFRVRCGPRDNRGPLVKGRTL-SIEAIQAIQSL 61
Query: 84 KRF-KDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDA 142
KR + D KLQ+ + T + RLLK D+VA L EL RQE LA+++F +I+ + Y+ +
Sbjct: 62 KRAERSDPTKLQQVLSTTLSRLLKADLVATLKELLRQERCALALEVFAVIKSE--YRAEL 119
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLF----PDSQTYTEVIRGFLKDGSPADAMN 198
+Y ++ AL+R G E ++ + D D + ++I+ + +
Sbjct: 120 GLYAEVAAALSRNGAAEEIDRLVSDLDGGDGVIEWGDDDKGLIKLIKAVISGNRRESTVR 179
Query: 199 IYE--------DMIKSPDPPEELPFRILLKGL--LPHPLLRSKVKKDFEELF 240
IY MIK+ D ++L KGL L L ++ ++FE+L
Sbjct: 180 IYRMMRRKGWGSMIKADD----YMIKVLSKGLRRLGEIELADEINREFEDLV 227
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FDI+ + + P +Y LI ++ ++NEA + M DL PD+ TY+ ++
Sbjct: 335 AQKLFDIMVGK-GFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLM 393
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+GF + G P A ++++M P+ + + ILL GL H
Sbjct: 394 QGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKH 434
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y +I L + G NEA +++ M P+S TY I+GFL++G P++A+
Sbjct: 488 QPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVR 547
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ E+M+ + F++LL
Sbjct: 548 LIEEMVGRGFSADSSTFQMLL 568
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L L + + I AVK+FD I K + P Y +I L + G A+Q+ + M +
Sbjct: 146 TLLNGLCSKAKIIDAVKLFDEIGKM-GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEE 204
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD Y VI KD +AM + +M+ PP + + +L G
Sbjct: 205 KGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFC 257
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ +PD Y +I +L + + NEAM + M + + P+ TY+ ++ GF G
Sbjct: 203 EEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQL 262
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+A ++++ MI P + F IL+ GL ++
Sbjct: 263 NEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMI 297
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ G++NEA +++ M ++ P++ T+T ++ G K+G +A +
Sbjct: 244 PNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRV 303
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E M ++ P+ + L+ G
Sbjct: 304 FEMMTENGVEPDAYTYSALMDG 325
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P IY LI + GK+ A +++ ++ + + P TYT +I G LK+G +A
Sbjct: 453 EPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACE 512
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M+ + P + + ++G L
Sbjct: 513 MFRKMVVNGCLPNSCTYNVAIQGFL 537
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G+ A ++++ M L PDS TY+ ++ G K G +A +
Sbjct: 384 PDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRL 443
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ M +S P + IL++G+ L + ++ F LF
Sbjct: 444 LKAMQESKIEPHICIYNILIQGMCNFGKLEA-ARELFSNLF 483
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ L + G + EA +V+E M + + PD+ TY+ ++ G+ +A +
Sbjct: 279 PNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKL 338
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ P + IL+ G
Sbjct: 339 FDIMVGKGFAPSVRVYNILING 360
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 43/88 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ Y L+ L + G ++EA ++ ++M++ + P Y +I+G G A +
Sbjct: 419 PDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAAREL 478
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ ++ P + + +++ GLL L
Sbjct: 479 FSNLFVKGIQPSVVTYTVMISGLLKEGL 506
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + L+ L K+ +A+++++ + K P TYT +I+G K G +A+
Sbjct: 138 QPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQ 197
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M + P+ + + ++ L
Sbjct: 198 LLKKMEEKGCKPDVVAYNTVIDSLC 222
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 61/109 (55%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ I+ + P+ Y LI ++ +MNEA ++ M +++L PD+ TY+ ++
Sbjct: 360 AIKVLGIMIGKGC-APNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLM 418
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+G + G P +A+N++++M S P+ + + ILL G H L +K
Sbjct: 419 QGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALK 467
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + TI+AV++F + +Q+ +P+ Y +I +L + +NEA++ M
Sbjct: 206 TVINGLCKNGNTIMAVRVFRKM-EQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVD 264
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ PD TY ++ GF G +A ++++M+ P+ + F IL+ GL ++
Sbjct: 265 RGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSE 324
Query: 231 K--VKKDFEELFPEKHAY 246
V + E E +AY
Sbjct: 325 ARCVSETMTEKGAEPNAY 342
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ G++NEA ++++ M ++ PD+ T+ ++ G K+G ++A +
Sbjct: 269 PDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCV 328
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
E M + P + L+ G H + +K
Sbjct: 329 SETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIK 362
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD + Y +I L + G +EA + + M + PDS +Y +I+GFL++ +
Sbjct: 510 DGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSST 569
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
A+ + ++M+ + F++LL
Sbjct: 570 AIQLIDEMVGKRFSADSSTFQMLL 593
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPDA + LI L GK+ EA+ ++ M P+ +Y VI G K+G+ A+
Sbjct: 163 QPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVR 222
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++ M ++ P + + ++ L L+ V+
Sbjct: 223 VFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVE 257
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + G+ EA+ +++ M L PD Y+ ++ GF K G +A+ +
Sbjct: 409 PDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKL 468
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M + P + + IL++G+
Sbjct: 469 LKEMHERRIKPNIILYTILIRGM 491
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y LI + GK+ A +++ + + + PD TY +I+G LK+G +A
Sbjct: 478 KPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYE 537
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ M P+ + ++++G L +
Sbjct: 538 FFRKMEDDGFLPDSCSYNVIIQGFLQN 564
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L + G ++EA V E+M ++ P++ TY ++ G+ +A+ +
Sbjct: 304 PDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV 363
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
MI P + IL+ G
Sbjct: 364 LGIMIGKGCAPNLSSYNILING 385
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 125 AVKIFDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
AV +F+ + W ++P+ Y +I L + G A++V+ M + P+ TY
Sbjct: 185 AVGLFN---EMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNT 241
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
+I KD +A+ +M+ PP+ + + +L G
Sbjct: 242 IIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCS 283
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G ++EA+++ + M + + P+ YT +IRG G A +
Sbjct: 444 PDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKEL 503
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ + P+ + +++KGLL L
Sbjct: 504 FSKLSADGIRPDIWTYNVMIKGLLKEGL 531
>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 485
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++FD + ++D + DA Y L+ L +G+ ++A ++ M D+ P+ T+T VI
Sbjct: 193 AVELFDRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 251
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
F+K+G ++AM +YE+M + P+ + L+ GL H
Sbjct: 252 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 292
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD IY +I + G +N+A+++++ M ++ + D+ TY ++ G G +DA
Sbjct: 170 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 229
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ DM+ P + F ++ + S+ K +EE+ + DP + L
Sbjct: 230 RLMRDMVMRDIVPNVITFTAVIDVFVKEGKF-SEAMKLYEEM--TRRCVDPDVFTYNSL 285
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L G+++EA Q+ + M + PD TY +I GF K + +
Sbjct: 277 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 336
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + + +++G
Sbjct: 337 FREMAQRGLVGDTITYNTIIQG 358
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI ++ +++E +++ M + L D+ TY +I+G+ + G P A I
Sbjct: 312 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 371
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M P+ + ILL GL +
Sbjct: 372 FSRMDSRPNIR---TYSILLYGLCMN 394
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + +I + GK +EAM+++E M + + PD TY +I G G +A +
Sbjct: 242 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 301
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P+ + + L+ G
Sbjct: 302 LDLMVTKGCLPDVVTYNTLINGFC 325
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ L ++ +A+ ++E+M+K ++ D TY VI G K G+ DA +
Sbjct: 378 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWD 437
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ + P+ + + ++ G
Sbjct: 438 LFRSLSCKGLKPDVVSYTTMISGFC 462
>gi|356557251|ref|XP_003546931.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 808
Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q + A+K+F + K ++P+ Y LI + M A +V+ M+ DL P+
Sbjct: 563 KQHDMSSALKMFGQMMKHK-FKPNVITYTSLINGFCKKADMIRAEKVFRGMKSFDLVPNV 621
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT ++ GF K G P A +I+E M+ + PP + F L+ GL
Sbjct: 622 VTYTTLVGGFFKAGKPEKATSIFELMLMNGCPPNDATFHYLINGL 666
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y++ L+ R G+++EA+++++ + ++ + P Y +I+GF K G DA++
Sbjct: 478 QPDVYVFATLMDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALS 537
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
M P+E + ++ G + + S +K F ++ KH + P
Sbjct: 538 CLNKMKNVHHAPDEYTYSTVIDGYVKQHDMSSALKM-FGQMM--KHKFKP 584
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A+KIF +I ++ P Y +I + GKM +A+ M+ PD
Sbjct: 493 RNGELDEAIKIFKVIIRKG-VDPGIVGYNAMIKGFCKFGKMTDALSCLNKMKNVHHAPDE 551
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY+ VI G++K + A+ ++ M+K P + + L+ G
Sbjct: 552 YTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGF 596
Score = 41.6 bits (96), Expect = 0.30, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y I + G+++ A+ V E M ++ +FPD+Q Y ++ G K+G
Sbjct: 408 KPDLVSYGAFIHGVVVHGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKNGRFPAMKL 467
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M+ P+ F L+ G + + L +K
Sbjct: 468 LLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIK 502
Score = 41.6 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY L+ L + G+ + M ++ PD + ++ GF+++G +A+ I
Sbjct: 444 PDAQIYNVLMSGLCKNGRFPAMKLLLSEMLDRNVQPDVYVFATLMDGFIRNGELDEAIKI 503
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ +I+ P + + ++KG
Sbjct: 504 FKVIIRKGVDPGIVGYNAMIKGF 526
Score = 37.4 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 23/114 (20%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G++ EA + E ++ L P+ +YT ++ + K G A +
Sbjct: 339 PDITTYNTMINFSCKGGRIKEADEFLEKAKERGLLPNKFSYTPLMHAYCKQGDYVKAAGM 398
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHP------LLRSKVKKDFEELFPEKHAYD 247
+ + + P+ + + + G++ H ++R K+ + + +FP+ Y+
Sbjct: 399 LFRIAEIGEKPDLVSYGAFIHGVVVHGEIDVALMVREKMME--KGVFPDAQIYN 450
>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
Length = 426
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++FD + ++D + DA Y L+ L +G+ ++A ++ M D+ P+ T+T VI
Sbjct: 134 AVELFDRM-ERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVI 192
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
F+K+G ++AM +YE+M + P+ + L+ GL H
Sbjct: 193 DVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 233
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD IY +I + G +N+A+++++ M ++ + D+ TY ++ G G +DA
Sbjct: 111 FRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAA 170
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ DM+ P + F ++ + S+ K +EE+ + DP + L
Sbjct: 171 RLMRDMVMRDIVPNVITFTAVIDVFVKEGKF-SEAMKLYEEM--TRRCVDPDVFTYNSL 226
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L G+++EA Q+ + M + PD TY +I GF K + +
Sbjct: 218 PDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKL 277
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + + +++G
Sbjct: 278 FREMAQRGLVGDTITYNTIIQG 299
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI ++ +++E +++ M + L D+ TY +I+G+ + G P A I
Sbjct: 253 PDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEI 312
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M P+ + ILL GL +
Sbjct: 313 FSRMDSRPNIR---TYSILLYGLCMN 335
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + +I + GK +EAM+++E M + + PD TY +I G G +A +
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 242
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M+ P+ + + L+ G +SK + +LF E
Sbjct: 243 LDLMVTKGCLPDVVTYNTLING-----FCKSKRVDEGTKLFRE 280
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ L ++ +A+ ++E+M+K ++ D TY VI G K G+ DA +
Sbjct: 319 RPNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWD 378
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ + P+ + + ++ G
Sbjct: 379 LFRSLSCKGLKPDVVSYTTMISGFC 403
>gi|440792915|gb|ELR14122.1| pentatricopeptide repeat domain/PPR repeatcontaining protein
[Acanthamoeba castellanii str. Neff]
Length = 593
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ L + E KI+D +R+ +Q + +Y LI R G + +V++ MR
Sbjct: 368 TCIFNHLGKAGEVRRIAKIYDELRRGASFQFNVQVYTALINGFGRAGDLARMQKVYDRMR 427
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+E++ P +QTYT +I F K GSP +++++ + P+ F L+KGL
Sbjct: 428 QEEIRPTAQTYTALIEAFTKHGSPYGVVDMWKQVKHQTFLPDSRLFHALVKGL 480
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA IY LI + A+ +M +A+ ++E MR + + D +T + V+ F + G
Sbjct: 144 KPDAIIYNSLINSCAKMNRMKQALHIYEDMRAQGIPTDQRTLSAVMNVFSRMGDIDRVKT 203
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M S + + ++K
Sbjct: 204 LKAEMEASGQKLDSFNYGCVMK 225
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + PD TYT VI
Sbjct: 385 LFDLMLG-DGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAAL 443
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 488
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 105 LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+++DIV +++ L + + A IFD+ + PDA +Y L+ GKM +A
Sbjct: 499 MRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQH-PDAVVYSMLMDGYCLVGKMEKA 557
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++V+++M + P+ Y ++ G+ K G + ++++ +M++ P + + I++ G
Sbjct: 558 LRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 617
Query: 222 L 222
L
Sbjct: 618 L 618
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +LI + TG+ EA++V++ MR+ + PD T ++ K G +A ++
Sbjct: 291 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDV 350
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P+ ++I+L G
Sbjct: 351 FDTMAMKGQNPDVFSYKIMLNG 372
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +PD Y +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 417 AMIIFNEMRDH-GVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 475
Query: 185 RGFLKDGS 192
+GF GS
Sbjct: 476 QGFCTHGS 483
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+ PD L+ +L + GK+ EA V+++M + PD +Y ++
Sbjct: 312 AVRVFKEMRRHSIL-PDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIML 370
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G+ G D ++++ M+ P+ F +L+K +L
Sbjct: 371 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGML 414
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + PD YT VI F K+G A
Sbjct: 184 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKAC 243
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYD 247
+++++M++ PP+ + + ++ L LR V K + P+ Y+
Sbjct: 244 DLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKG---VLPDNWTYN 297
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 41/86 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + M +A M + + PD+ TY +I G+ G +A+ +
Sbjct: 256 PDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRV 315
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+++M + P+ + +L+ L +
Sbjct: 316 FKEMRRHSILPDVVTLNMLMGSLCKY 341
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + EE A+ F +++ P+ Y Y LI L R K N+A W+ M+K+ L P
Sbjct: 209 LVKAEEINEALICFQSMKEMKC-SPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVP 267
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ TYT +I G K G+ DA +++E + P+ F L++G+
Sbjct: 268 NVVTYTTMISGLAKVGNITDACSLFERFKANGGIPDAASFNALIEGM 314
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
IF+ I K + PD Y LI L + G+ E ++ +M++ D++ Y V+ GF
Sbjct: 46 IFEDI-KGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGF 104
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A E+M PP + ++ GL
Sbjct: 105 CKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGL 139
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 64 SLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
++ GK L L +LG FK D +K + + L++ E I
Sbjct: 248 NVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCI-------------LDKGSEAI 294
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
K K++ +PD Y LI L+++G++ EA + + M + FPD+ TYT +
Sbjct: 295 GVYKKM----KEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSL 350
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G ++G+ A+ + E+M P + LL GL
Sbjct: 351 MNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLC 390
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD + K P+ Y Y L+ LAR G ++EA+ M++ PD +Y ++
Sbjct: 491 AVNLFDEMNKLGC-TPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIIL 549
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K G P AM + +M +S P+ + + +L G + H L + K +E+
Sbjct: 550 NGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVL-GAMSHAGLFEEAAKLMKEMNVLGF 608
Query: 245 AYD 247
YD
Sbjct: 609 EYD 611
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R Q + +PD + Y +LI L + G+ +EA + MR+E PD+ +I
Sbjct: 280 ALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMI 338
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G DA+ ++E+M P + + ++K L S++ FE +
Sbjct: 339 NFLGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERM 393
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 5/131 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L RQ+ A+++ + + K + QP A IY LI + ++ A+ ++E M
Sbjct: 232 LISAFCKLGRQDS---AIRLLNEM-KDNGMQPTAKIYTMLIALFFKLNNVHGALGLFEEM 287
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
R + PD TYTE+IRG K G +A N + +M + P+ + ++ L L
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRL 347
Query: 229 RSKVKKDFEEL 239
VK FEE+
Sbjct: 348 DDAVKL-FEEM 357
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 93 LQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152
+Q+ ++ V + M++ ++ L + AV IF I+ + QP A Y +II L
Sbjct: 142 IQEMVRNPVCVVTPMELSDIIRMLGNAKMISKAVAIFYQIKVRKC-QPTAQAYNSMIIML 200
Query: 153 ARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
G+ + +++ M E FPD+ TY+ +I F K G A+ + +M + P
Sbjct: 201 MHEGQYEKVHELYNEMSNEGHCFPDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPT 260
Query: 212 ELPFRILL 219
+ +L+
Sbjct: 261 AKIYTMLI 268
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G+ + A+++ M+ + P ++ YT +I F K + A+ +
Sbjct: 224 PDTVTYSALISAFCKLGRQDSAIRLLNEMKDNGMQPTAKIYTMLIALFFKLNNVHGALGL 283
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P+ + L++GL
Sbjct: 284 FEEMRHQYCRPDVFTYTELIRGL 306
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y + LI + G M++A+ ++E+M + +L PD TY +I GF K G A +
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++DMI+ P+ + + +L G LL
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLL 588
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L+E+ R++ + A +IFD + ++ PD + LI LAR G + +A+ + M +
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVL-PDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ PD+ YT +I GF ++G+ +DA+ + ++M+ + + + L G L +
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG-----LCKK 480
Query: 231 KVKKDFEELFPE 242
K+ D + LF E
Sbjct: 481 KMFADADMLFNE 492
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ + + + +PD Y LI + G+M A ++W+ M ++D+ PD +Y V+
Sbjct: 521 ALNLFEAMVRTNL-KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVL 579
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF G +A+N+ + M++ P + L+KG
Sbjct: 580 NGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y + L + +A ++ M + + PD T+T +IRG+ KDG+ A+N++
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E M+++ P+++ + L+ G
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFC 548
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 48/94 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L++ + R + EA ++++ M + + PD +++ +I ++G A+
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M +S P+ + + IL+ G + L +K
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALK 453
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q + Y ++ GKM EA QV M + + PD TY+ +I G + + +A
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFR 733
Query: 199 IYEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 734 FHDEMLQRGLVPDD 747
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y + LI + G M++A+ ++E+M + +L PD TY +I GF K G A +
Sbjct: 500 PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKEL 559
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++DMI+ P+ + + +L G LL
Sbjct: 560 WDDMIRKDIIPDHISYGTVLNGFCSSGLL 588
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L+E+ R++ + A +IFD + ++ PD + LI LAR G + +A+ + M +
Sbjct: 367 TLLVEICRRDNILEAQEIFDEMSRRGVL-PDLVSFSSLIGVLARNGHLYQALMHFREMER 425
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ PD+ YT +I GF ++G+ +DA+ + ++M+ + + + L G L +
Sbjct: 426 SGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNG-----LCKK 480
Query: 231 KVKKDFEELFPE 242
K+ D + LF E
Sbjct: 481 KMFADADMLFNE 492
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ + + + +PD Y LI + G+M A ++W+ M ++D+ PD +Y V+
Sbjct: 521 ALNLFEAMVRTNL-KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVL 579
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF G +A+N+ + M++ P + L+KG
Sbjct: 580 NGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKG 616
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y + L + +A ++ M + + PD T+T +IRG+ KDG+ A+N++
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E M+++ P+++ + L+ G
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFC 548
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 48/94 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L++ + R + EA ++++ M + + PD +++ +I ++G A+
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M +S P+ + + IL+ G + L +K
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALK 453
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q + Y ++ GKM EA QV M + + PD TY+ +I G + + +A
Sbjct: 674 QFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFR 733
Query: 199 IYEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 734 FHDEMLQRGLVPDD 747
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIF-DIIRK 134
++ GL R E Q F + R D+VA +L L ++ +T A+K+F D+I K
Sbjct: 190 ILSGLCRMGKVSEAKQ-FFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAK 248
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Y PD Y +++ LAR M+EA ++++ M P+ TY+ V+ G +
Sbjct: 249 --GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVD 306
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
DA + E+M K P+ + + ILL GL L+
Sbjct: 307 DAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLV 340
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIELERQEETI-LAVKIFDIIRKQ 135
+I GL + E L+ + R + VA LI ++E I A K+ + + +
Sbjct: 119 IISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASK 178
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
Y PD Y ++ L R GK++EA Q ++SM PD Y ++ K+G +
Sbjct: 179 -GYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDE 237
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
AM +++D+I P+ + + +L GL
Sbjct: 238 AMKLFKDVIAKGYMPDTVTYNSILLGL 264
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y Y L+ A + KM EAM+++++M ++ PD TY+ +I G K G +A+
Sbjct: 75 EPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKVTEALE 134
Query: 199 -IYEDMIKSPDPPEELPFRILLKGLL 223
++ MI+ + + L+ GL
Sbjct: 135 MLFHKMIERGCSANTVAYNALINGLC 160
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV-WESMRKEDLFPDSQTYTEV 183
A+++F + ++ ++PD Y +I L +TGK+ EA+++ + M + ++ Y +
Sbjct: 97 AMELFKTMAEK-GFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNAL 155
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G KD + A + E+M P+ + + +L GL
Sbjct: 156 INGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLC 195
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A+ G+++EA +++E M L P TY ++ F K+ +AM
Sbjct: 40 SPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAME 99
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+++ M + P+ + + ++ GL KV + E LF
Sbjct: 100 LFKTMAEKGFEPDVVTYSTIISGLCK----TGKVTEALEMLF 137
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L +T +++A +++ +M PD +Y+ V+ G K DA +
Sbjct: 322 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 381
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ MI+ P+ + F IL+ GL
Sbjct: 382 FDRMIERKLVPDVVTFNILMDGLC 405
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
D+V I L+ +T L K ++ + PD Y ++ L +T K+++A ++
Sbjct: 323 DVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLF 382
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ M + L PD T+ ++ G K G +A ++ + M S P+ + + L+ GL
Sbjct: 383 DRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGL 439
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 7/106 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y ++ ++ + + GK+ + +++E M + PD Y +I G+ K G +A
Sbjct: 5 SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFE 237
+YE+M+ P + LL L ++ +K FE
Sbjct: 65 LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFE 110
>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 719
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L+E ++ + + IF +R +D PD + ++ R+G +++A+ + S+++
Sbjct: 335 SLLMEACKKGDAVETENIFSDMRSRDVV-PDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 393
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD+ YT +I+G+ + G ++AMN+ +M++ + + + +L GL +L
Sbjct: 394 AGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML-G 452
Query: 231 KVKKDFEE-----LFPEKHA 245
+ K F E LFP+ +
Sbjct: 453 EADKLFNEMTERGLFPDSYT 472
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G M EA ++ +M + P TY VI G K G A +
Sbjct: 258 PDIVTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEV 317
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ +M++S P+ +R LL
Sbjct: 318 FAEMLRSGLSPDSTTYRSLL 337
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y Y +I L + GK A +V+ M + L PDS TY ++ K G +
Sbjct: 291 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETE 350
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
NI+ DM P+ + F ++
Sbjct: 351 NIFSDMRSRDVVPDLVCFSSMMS 373
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 127 KIFDIIRKQDWYQ----PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
K F +++K + Q PD + Y ++ R +M EA V M + + PD TYT
Sbjct: 628 KAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAVLRKMIERGVNPDRSTYTS 687
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
+I GF+ + +A +++M++ P++
Sbjct: 688 LINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
MD+V +L L +++ A K+F+ + ++ + PD+Y LI + G + A
Sbjct: 431 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLF-PDSYTLTILIDGHCKLGNLQNA 489
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M++++ M+++ + D TY ++ GF K G A I+ DM+ P + F IL+
Sbjct: 490 MELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNA 549
Query: 222 LLP 224
L
Sbjct: 550 LCS 552
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ AL G ++EA +VW+ M + + P +I+G+ + G+ +D E MI
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605
Query: 208 DPPEELPFRILLKGLL 223
P+ + + L+ G +
Sbjct: 606 FVPDCISYNTLIYGFV 621
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI R G ++EAM + M ++ D TY ++ G K +A +
Sbjct: 398 PDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKL 457
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + P+ IL+ G
Sbjct: 458 FNEMTERGLFPDSYTLTILIDG 479
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y L+ + G ++ A ++W M +++ P +++ ++ G ++A ++
Sbjct: 504 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVW 563
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
++MI P + ++KG RS D E+F EK
Sbjct: 564 DEMISKSIKPTVMICNSMIKG-----YCRSGNASD-GEIFLEK 600
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQTYTEVIRGFLKDGS 192
+ + PD Y LI + M++A + + M ++ L PD TY ++ GF ++
Sbjct: 603 SEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQ 662
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A + MI+ P+ + L+ G +
Sbjct: 663 MKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQ 695
>gi|242041671|ref|XP_002468230.1| hypothetical protein SORBIDRAFT_01g042160 [Sorghum bicolor]
gi|241922084|gb|EER95228.1| hypothetical protein SORBIDRAFT_01g042160 [Sorghum bicolor]
Length = 396
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+++I+++++ +PDA Y + L G++ +A+ + E M+KE PDS +Y E+I
Sbjct: 193 AEKVWEIMKERNI-EPDAKCYNAKLRGLISQGRVEDAVALIERMQKEGPKPDSVSYNELI 251
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
RG+ K+G A +Y+D+IK+ E P R L+PH
Sbjct: 252 RGYCKEGRLNQAKKVYDDLIKN----ECAPNRGTFHTLVPH 288
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 76/154 (49%), Gaps = 3/154 (1%)
Query: 93 LQKFIKTHVLRLLKMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
Q+ + +H + + ++LI L ++ E A+ + ++ K+ PD + ++
Sbjct: 125 FQQILASHPTIVPTVYSYSILISALCQKRELSAALDVITLMEKR-GVSPDNIFFNIVLNG 183
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
R ++A +VWE M++ ++ PD++ Y +RG + G DA+ + E M K P+
Sbjct: 184 FYRNDSFDDAEKVWEIMKERNIEPDAKCYNAKLRGLISQGRVEDAVALIERMQKEGPKPD 243
Query: 212 ELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
+ + L++G L ++ KK +++L + A
Sbjct: 244 SVSYNELIRGYCKEGRL-NQAKKVYDDLIKNECA 276
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQ 135
+I G + K ++ L+ F + V R + D+V + LI+ L ++ A+ +F + K
Sbjct: 156 LITGFCKSKKSDDALRVF-EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
P+ Y LI R GKM+EAM + E M + PD TYT ++ GF K D
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
A ++ M + P+ + F L+ GL L V
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 94 QKFIKTHVLRLLKMDIVA--VLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150
+KF++ R L ++V VLI+ L + AV + +RK+ P A Y LI
Sbjct: 66 RKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK--CVPTAVTYNSLIS 123
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
L + + +EA + E M PD TYT +I GF K DA+ ++E ++ P
Sbjct: 124 GLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRP 183
Query: 211 EELPFRILLKGLLPHPLLRSKV 232
+ + + L+ GL L+ +
Sbjct: 184 DVVTYSCLIDGLCKEGRLKEAI 205
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWE 166
+++ L + ER E +D++ + + PD + Y LI ++ K ++A++V+E
Sbjct: 121 LISGLCKAERASEA------YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ PD TY+ +I G K+G +A++++ MIKS P + + L+ G
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD Y Y +I AL +++EA + E M +L P+ TYT +I G K G +A
Sbjct: 41 GFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEA 100
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + M K P + + L+ GL
Sbjct: 101 VALLSKMRKKC-VPTAVTYNSLISGLC 126
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + +I L + + +EAM++ E R+ PD YT VI G ++ +A +
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLL 228
Y M++ P P + + L+ GL +L
Sbjct: 417 YRKMLEEPGCLPNSITYSTLITGLCNAGML 446
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L R ++++A+ + MR++ P TY ++ G+ + +A
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348
Query: 200 YEDMIKSPD-PPEELPFRILLKGLL 223
M++ D PP + F I+++GL
Sbjct: 349 ---MLEEMDCPPNVVSFNIMIRGLC 370
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+I+ +Q P + Y LI ++ +M+EA + M + L PD+ TY+ ++
Sbjct: 352 AKKVFEIMIRQGC-APGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 410
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+G + G P +A+NI+++M P + + ILL G H L +K
Sbjct: 411 QGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALK 459
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y ++ G++NEA ++++ M D+ PD+ T T ++ G K+G ++A +
Sbjct: 261 PNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLV 320
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAYD 247
+E M + P + L+ G L+ ++ KK FE + P H+Y+
Sbjct: 321 FETMTEKGVEPNISTYNALMDGYCLQRLM-NEAKKVFEIMIRQGCAPGVHSYN 372
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV++F+ ++R+ ++P+ Y +I L +TG + A+ V++ M + PD TY +
Sbjct: 177 AVELFNEMVRR--GHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTI 234
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I KD DAM +M+ PP + ++ G
Sbjct: 235 IDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFC 274
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++ L + T +AV +F + +Q+ +PD Y +I +L + +N+AM+ M
Sbjct: 198 TIINGLCKTGNTSMAVDVFKKM-EQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLD 256
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ P+ TY ++ GF G +A ++++M+ P+ + IL+ GL ++ S
Sbjct: 257 RGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMV-S 315
Query: 231 KVKKDFEEL 239
+ + FE +
Sbjct: 316 EARLVFETM 324
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ L + G+ EA+ +++ M L P+ TY+ ++ GF K G +A+
Sbjct: 400 NPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALK 459
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + M + P + IL++G+ L K+ F +LF +
Sbjct: 460 LLKSMQEKKLEPNIVHHTILIEGMFIAGKLEV-AKELFSKLFAD 502
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + +D PD L+ L + G ++EA V+E+M ++ + P+ TY ++
Sbjct: 282 ATRLFKEMVGRDV-MPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALM 340
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ +A ++E MI+ P + IL+ G
Sbjct: 341 DGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFC 379
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 10/130 (7%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
E+KL+ I H + + M I +LE +E L K+F D +P Y +I
Sbjct: 466 EKKLEPNIVHHTILIEGMFIAG---KLEVAKE--LFSKLF-----ADGIRPTIRTYTVMI 515
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
L + G +EA ++ M + P+S +Y +I+GFL++ + A+ + ++M+
Sbjct: 516 KGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFS 575
Query: 210 PEELPFRILL 219
F++LL
Sbjct: 576 ANLSTFQMLL 585
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI + GK+ A +++ + + + P +TYT +I+G LK+G +A +
Sbjct: 470 EPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYD 529
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ M P + ++++G L +
Sbjct: 530 LFRKMEDDGFLPNSCSYNVMIQGFLQN 556
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 4/157 (2%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQ 135
+I G + K ++ L+ F + V R + D+V + LI+ L ++ A+ +F + K
Sbjct: 156 LITGFCKSKKSDDALRVF-EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 214
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
P+ Y LI R GKM+EAM + E M + PD TYT ++ GF K D
Sbjct: 215 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 274
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
A ++ M + P+ + F L+ GL L V
Sbjct: 275 AYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAV 311
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + +RK+ P A Y LI L + + +EA + E M PD TYT +I
Sbjct: 100 AVALLSKMRKK--CVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLI 157
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
GF K DA+ ++E ++ P+ + + L+ GL L+ +
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAI 205
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWE 166
+++ L + ER E +D++ + + PD + Y LI ++ K ++A++V+E
Sbjct: 121 LISGLCKAERASEA------YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 174
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ PD TY+ +I G K+G +A++++ MIKS P + + L+ G
Sbjct: 175 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD Y Y +I AL +++EA + E M +L P+ TYT +I G K G +A
Sbjct: 41 GFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEA 100
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + M K P + + L+ GL
Sbjct: 101 VALLSKMRKKC-VPTAVTYNSLISGLC 126
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + +I L + + +EAM++ E R+ PD YT VI G ++ +A +
Sbjct: 357 PNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRV 416
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLL 228
Y M++ P P + + L+ GL +L
Sbjct: 417 YRKMLEEPGCLPNSITYSTLVTGLCNAGML 446
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L R ++++A+ + MR++ P TY ++ G+ + +A
Sbjct: 289 PDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKF 348
Query: 200 YEDMIKSPD-PPEELPFRILLKGLL 223
M++ D PP + F I+++GL
Sbjct: 349 ---MLEEMDCPPNVVSFNIMIRGLC 370
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 8/124 (6%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
IF+++ + P+ +++ LI A AR G M++AM ++E M+ + + PD+ T+ VI
Sbjct: 246 NIFNLMLTKG-IAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISS 304
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP-LLRSKVKKDFEELFPEKHA 245
+ G DA++ + M+ PP E + L++G H L+++K EL E
Sbjct: 305 LCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK------ELISEMMN 358
Query: 246 YDPP 249
D P
Sbjct: 359 KDIP 362
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ + L+ G M EA + ++M + P+ Y ++ G+ K+G
Sbjct: 394 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 453
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
DA+ ++ DM+ P + + I+L GL + KK F E+
Sbjct: 454 DALTVFRDMLHKGVKPTSVLYSIILHGLF-QARRTTAAKKMFHEMI 498
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P I +I L + +M++A + + M + PD TY+ +I G K + A +
Sbjct: 81 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 140
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M+++ P + + L+ G
Sbjct: 141 LEQMVEAGTRPNSITYNSLIHG 162
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 13/136 (9%)
Query: 109 IVAVLIELERQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+VA L E + EE A KI + +I K+ PD Y L+ + KM+EA ++ E
Sbjct: 238 VVACLCESGKYEE---AGKILEKMIEKK--CGPDVVTYNSLMDGFCKVSKMDEAERLLED 292
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL---- 223
M P TYT +I GF + ADA + EDM K+ P+ + + LL GL
Sbjct: 293 MVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK 352
Query: 224 ---PHPLLRSKVKKDF 236
H LL V+KD
Sbjct: 353 LEEAHELLEVMVEKDC 368
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L ++ER +E A+K+ ++ ++ +P+ Y Y LI L +T ++ +A+ V + M
Sbjct: 512 IIGGLCDVERGDE---ALKMLQVMSERGC-EPNLYTYSILINGLCKTKRVEDAINVLDVM 567
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ PD TYT +I GF K A ++ M S P++L + IL+ G
Sbjct: 568 LEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFC 622
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L + +R +E A ++ D + ++D + PDA +Y LI L + GK++ A V + M +
Sbjct: 102 LCQCQRIDE---AYQLLDEMIQKDCH-PDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS 157
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
PD TYT +I G + + +A + E M +S P+ + + LL GL L +V
Sbjct: 158 CVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLE-EV 216
Query: 233 KKDFEELF-----PEKHAYD 247
K EE+ P+ +Y+
Sbjct: 217 SKLLEEMVEAGREPDTFSYN 236
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + D++ ++ PD Y LI + KM+ A Q +++MR PD Y +I
Sbjct: 560 AINVLDVMLEKGCV-PDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILI 618
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF + G+ A+ + + M++ P+ + L++ L
Sbjct: 619 SGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSL 656
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y ++ L +GK EA ++ E M ++ PD TY ++ GF K +A
Sbjct: 229 EPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAER 288
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ EDM+ P + + L+ G
Sbjct: 289 LLEDMVGRRCAPTVITYTTLIGG 311
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ L + GK+ EA ++ E M ++D PD TY+ ++ G K G DA
Sbjct: 334 SPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARL 393
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E M++ P + F ++ G
Sbjct: 394 LLEMMLERGCQPNLVTFNTMIDGFC 418
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI+ +T ++EA ++ E M++ L PD+ Y ++ G K + +
Sbjct: 160 PDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKL 219
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E+M+++ P+ + ++ L
Sbjct: 220 LEEMVEAGREPDTFSYNTVVACLC 243
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI +R ++ +A +V E M K + PD TY ++ G K G +A +
Sbjct: 300 PTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHEL 359
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E M++ P+ + + IL+ GL
Sbjct: 360 LEVMVEKDCAPDVVTYSILVNGLC 383
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 133 RKQDWY-----QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
R QD + PD Y ++ L TGK+ EA +V + M K+ P S Y +I G
Sbjct: 457 RMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGL 516
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ + + M + P + IL+ GL
Sbjct: 517 CDVERGDEALKMLQVMSERGCEPNLYTYSILINGLC 552
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PD Y L+ L + ++ E ++ E M + PD+ +Y V+ + G
Sbjct: 189 KESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKY 248
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A I E MI+ P+ + + L+ G
Sbjct: 249 EEAGKILEKMIEKKCGPDVVTYNSLMDGFC 278
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ +++ ++D PD Y L+ L + GK+++A + E M + P+ T+ +I
Sbjct: 356 AHELLEVMVEKDC-APDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMI 414
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF K G + + E M + P+ + + L+ G
Sbjct: 415 DGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDG 451
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + +I + GK++E +V E M++ PD TY+ +I G+ K DA
Sbjct: 404 QPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFA 463
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
I P++ + +L+GL
Sbjct: 464 IL------GISPDKASYSSMLEGLCS 483
>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
ephedroides]
Length = 418
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KMN+A ++++ M L P+ T+T +I G K GS AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
Y++M++ P+ + + L+ GL
Sbjct: 263 AYKEMLRQGFSPDLITYNTLIYGLC 287
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ R G ++E ++ +M + PD
Sbjct: 148 KEGEMRLAQSVFDEITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++MI + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDG 250
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++ + + +Q + PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEAYKEMLRQG-FSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLC 357
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI +TG ++ AM+ ++ M ++ PD TY +I G K+G A ++
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+II K+ Y D Y ++ + G++NE ++ +M + +++P S +Y ++ G++K
Sbjct: 744 EIICKEGLYA-DCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIK 802
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHA 245
G + + +Y DM+K P+ + +R+L+ GL + L+ V K E +FP+ A
Sbjct: 803 KGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLA 862
Query: 246 YD 247
+D
Sbjct: 863 FD 864
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI GK+N A+ ++ M ++ L P TYT +I G+ ++G +A +
Sbjct: 332 PDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRV 391
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+M + P EL + LL G H L
Sbjct: 392 LYEMQITGVRPSELTYSALLNGYCKHSKL 420
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D L++ + + G ++EA+ + E M ++ PD+ TYT ++ GF K G A+ +
Sbjct: 648 DEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILL 707
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ M++ P+ + + LL GL+
Sbjct: 708 QMMLEKGLVPDTIAYTCLLNGLV 730
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD Y LI + + G ++E ++ M+K + P++ YT ++ F K G +
Sbjct: 468 DGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKE 527
Query: 196 AMNIYEDMIKS 206
A+ + D+ +S
Sbjct: 528 ALKYFVDIYRS 538
Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++ I+ L+ + R G + EA Q + M + + D ++ +I + + G+ +A ++Y
Sbjct: 543 NSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVY 602
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++M++ PP+ + LL+GL
Sbjct: 603 DNMVRHGWPPDICTYGSLLRGL 624
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + Y L+ + G+++ + ++ M KE + PD+ TY +I G + G A+
Sbjct: 788 PSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKF 847
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M+ P+ L F IL+K
Sbjct: 848 LEKMVLEGVFPDNLAFDILIKAF 870
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ + GK+ A+ + + M ++ L PD+ YT ++ G + +G A +
Sbjct: 682 PDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM 741
Query: 200 YEDMI 204
++++I
Sbjct: 742 FQEII 746
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y+ LI L G + A++ E M E +FPD+ + +I+ F + ++A+
Sbjct: 822 KPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQ 881
Query: 199 IYEDM--IKSPDPPEELPFRILLKGLLPHPLLRSKV 232
++ M + D EL + G++P + S +
Sbjct: 882 LFSYMKWVGDIDGAFELKEDMKALGVVPSEVAESSI 917
>gi|50582688|gb|AAT78758.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|108709716|gb|ABF97511.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1025
Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 5/122 (4%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+II K+ Y D Y ++ + G++NE ++ +M + +++P S +Y ++ G++K
Sbjct: 620 EIICKEGLYA-DCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIK 678
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHA 245
G + + +Y DM+K P+ + +R+L+ GL + L+ V K E +FP+ A
Sbjct: 679 KGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLA 738
Query: 246 YD 247
+D
Sbjct: 739 FD 740
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D L++ + + G ++EA+ + E M ++ PD+ TYT ++ GF K G A+ +
Sbjct: 524 DEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALILL 583
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ M++ P+ + + LL GL+
Sbjct: 584 QMMLEKGLVPDTIAYTCLLNGLV 606
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI GK+N A+ ++ M ++ L P TYT +I G+ ++G +A +
Sbjct: 332 PDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRV 391
Query: 200 -YEDMIKSPDPPEELPFRILLKGLL 223
YE I P E + +LK +L
Sbjct: 392 LYEMQITGVRPREVSKAKQILKCML 416
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A + KM+ A+Q++ M+ + P S+TY ++ G ++ + I
Sbjct: 734 PDNLAFDILIKAFSEKSKMSNALQLFSYMKWLHMSPSSKTYVAMVNGLIRKNWLQQSYEI 793
Query: 200 YEDMIKSPDPPEELPFRILL 219
DM++S P+ + L+
Sbjct: 794 LHDMVESGLQPKHTHYIALI 813
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + Y L+ + G+++ + ++ M KE + PD+ TY +I G + G A+
Sbjct: 664 PSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKF 723
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M+ P+ L F IL+K
Sbjct: 724 LEKMVLEGVFPDNLAFDILIKAF 746
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ + GK+ A+ + + M ++ L PD+ YT ++ G + +G A +
Sbjct: 558 PDTYTYTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM 617
Query: 200 YEDMI 204
++++I
Sbjct: 618 FQEII 622
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD Y AL G + EA Q + M + + D ++ +I + + G+ +
Sbjct: 418 DGIDPDVITYS----ALINEGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLE 473
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A ++Y++M++ PP+ + LL+GL
Sbjct: 474 AFSVYDNMVRHGWPPDICTYGSLLRGL 500
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI A R G ++ A ++ E M+ + P + ++RG K G +A+
Sbjct: 803 QPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESSIVRGLCKCGKVEEAII 862
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ ++++ P F L+ GL
Sbjct: 863 VFSSIMRAGMVPTIATFTTLMHGL 886
Score = 38.5 bits (88), Expect = 2.8, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y+ LI L G + A++ E M E +FPD+ + +I+ F + ++A+
Sbjct: 698 KPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQ 757
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M P + ++ GL+
Sbjct: 758 LFSYMKWLHMSPSSKTYVAMVNGLI 782
>gi|302776656|ref|XP_002971480.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
gi|300160612|gb|EFJ27229.1| hypothetical protein SELMODRAFT_95907 [Selaginella moellendorffii]
Length = 631
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 51/85 (60%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P++YIY LI R+G++++ ++++ M + FPDS TYT ++ GF + G + AM
Sbjct: 506 HAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAM 565
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ ++M++ P + +L++ L
Sbjct: 566 ELLQEMVREGHTPALATYNVLIRSL 590
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F ++K PD +Y LI L + GK++EA+++ E M ++ + PD +TY VI
Sbjct: 354 ALEVFYNMQKAGC-MPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVI 412
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD-FEELFPEK 243
G A + + M + P+ + + LL GL L R+ D F+E+ K
Sbjct: 413 DVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGL--KKLRRTDEACDLFDEMQANK 470
Query: 244 HAYDPPEEIFGKL 256
P FG L
Sbjct: 471 CM--PDLTTFGTL 481
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L +L R +E A +FD ++ PD + LI LA+ G+M +A++ + K
Sbjct: 450 LKKLRRTDE---ACDLFDEMQANKC-MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMG 505
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
P+S Y +I GF + G +++DMI+ P+ + + IL+ G
Sbjct: 506 HAPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG 554
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 96 FIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDII--------RKQDWYQ-------- 139
+ H R +M VA +EL R + L+ ++ I R + Q
Sbjct: 237 LVNAHC-RAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLFESTMTK 295
Query: 140 ---PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + Y +L+IAL ++ ++ EA+ +++ + + D TY+ ++ F K G A A
Sbjct: 296 ESVPDVFTY-NLLIALCKSKQLEEALTLFQEAEQGGVVLDVFTYSYLMDAFGKAGRAAKA 354
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ ++ +M K+ P+ + + +L+ L
Sbjct: 355 LEVFYNMQKAGCMPDTVVYNVLISCL 380
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y L+ A R G+M+E E R + + Y +I+GF++ G A+A ++
Sbjct: 230 DAFTYGILVNAHCRAGQMHEVASFMELARHDGCALSAVNYNFIIQGFIRCGRLAEATQLF 289
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
E + P+ + +L+ L +SK ++ LF E
Sbjct: 290 ESTMTKESVPDVFTYNLLI------ALCKSKQLEEALTLFQE 325
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 67/146 (45%), Gaps = 8/146 (5%)
Query: 78 FVILGLKRFKDDEEKLQKF----IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIR 133
F+I G R E Q F K V + +++ L + ++ EE A+ +F
Sbjct: 271 FIIQGFIRCGRLAEATQLFESTMTKESVPDVFTYNLLIALCKSKQLEE---ALTLFQEA- 326
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q D + Y L+ A + G+ +A++V+ +M+K PD+ Y +I K G
Sbjct: 327 EQGGVVLDVFTYSYLMDAFGKAGRAAKALEVFYNMQKAGCMPDTVVYNVLISCLGKQGKV 386
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+A+ + EDM + P+ + I++
Sbjct: 387 DEALELLEDMNRKGIMPDCRTYNIVI 412
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ Y L++ +R G + AM++ + M +E P TY +IR G DA +
Sbjct: 543 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 602
Query: 200 YEDMIKSPDPPEELPFRIL 218
+++MI P+ + L
Sbjct: 603 FKEMIAKGFNPDMQTYSAL 621
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
A+ + D +R+ ++ QPD + + L ++ +AM +++ MR+ D PD Y +
Sbjct: 72 AMGMLDDMRRGNFCQPDTVAFTAAMHWLCEVRRVEQAMTLFDDMRETCDCAPDVVAYNTL 131
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILL 219
I G+ K G A++++ + + P + F L+
Sbjct: 132 IAGYCKAGDGDRALDMFRRLKQEGSCKPNAVSFDTLV 168
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KI+ +R + +PD + LI AR GKM+ AM MR L PD YT VI
Sbjct: 219 ALKIYKEMRHRG-IKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 277
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +DA+ + ++M+ P+ + + LL GL
Sbjct: 278 GGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 316
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + Q +PD Y LI + R G +++A +W+ M ++FP+ TY+ +I
Sbjct: 359 ALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILI 417
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G DA ++MI P + + ++KG
Sbjct: 418 DSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 454
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I R G M++A++V + M PD TY ++ G K+ DA +
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + PP+ F L+ G
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHG 349
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 5/130 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIELERQEETIL-AVKIFDIIRKQ 135
+I G R + K QKF++ ++ + D++ LI +E+ + A K+ +++ K+
Sbjct: 451 IIKGYCR-SGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE 509
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
QPD Y LI + G + EA ++E M + + PD TY +I G + G+ +
Sbjct: 510 K-VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKE 568
Query: 196 AMNIYEDMIK 205
A ++++M++
Sbjct: 569 AFQLHDEMLQ 578
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI GK+++A+Q++++M + L PD TY +I G + G A ++
Sbjct: 338 PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL 397
Query: 200 YEDMIKSPDPPEELPFRILL 219
++DM P + + IL+
Sbjct: 398 WDDMHSREIFPNHVTYSILI 417
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + KM++A ++ M KE + PD TY +I GF G+ +A
Sbjct: 477 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 536
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I+E M P+ + ++ G
Sbjct: 537 IFEKMCAKGIEPDRYTYMSMING 559
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y ++ L R+G ++A +V++ M + PD +++T +I GF + G +A+
Sbjct: 162 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 221
Query: 199 IYEDMIKSPDPPEELPFRILL-----KGLLPHPL 227
IY++M P+ + F L+ +G + H +
Sbjct: 222 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAM 255
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I R+G +++ + + M + PD TY +I G++K+ DA +
Sbjct: 443 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 502
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
M K P+ + + +L+ G H
Sbjct: 503 LNMMEKEKVQPDVVTYNMLINGFSVH 528
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + ++ +A + MR+ + PD T+T +I G+ +G A+ +
Sbjct: 303 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 362
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P+ + + L+ G+
Sbjct: 363 FDTMLNQRLRPDIVTYNTLIDGMC 386
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + ++ A R G AM + +SM + L P TY V++G + G A +
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M P+ F IL+ G
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFC 211
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L+E ++ + + K+F +R +D PD + ++ R+G +++A+ + S+++
Sbjct: 345 SLLMEACKKGDVVETEKVFSDMRSRDVV-PDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD+ YT +I+G+ + G + AMN+ +M++ + + + +L GL +L
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKML-G 462
Query: 231 KVKKDFEE-----LFPEKHA 245
+ K F E LFP+ +
Sbjct: 463 EADKLFNEMTERALFPDSYT 482
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G M EA ++ +M + P TY VI G K G A +
Sbjct: 268 PDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEV 327
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ +M++S P+ +R LL
Sbjct: 328 FAEMLRSGLSPDSTTYRSLL 347
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 127 KIFDIIRKQDWYQ----PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
K F +++K + Q PD + Y ++ R +M EA V M + + PD TYT
Sbjct: 638 KAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTC 697
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
+I GF+ + +A I+++M++ P++
Sbjct: 698 MINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ AL G + EA +VW+ M +++ P +I+G+ + G+ +D +
Sbjct: 548 PTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESF 607
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E MI P+ + + L+ G +
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFV 631
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
MD+V +L L +++ A K+F+ + ++ + PD+Y LI + G + A
Sbjct: 441 CAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALF-PDSYTLTILIDGHCKLGNLQNA 499
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M++++ M+++ + D TY ++ GF K G A I+ DM+ P + + IL+
Sbjct: 500 MELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNA 559
Query: 222 LLP 224
L
Sbjct: 560 LCS 562
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y Y +I L + GK A +V+ M + L PDS TY ++ K G +
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETE 360
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
++ DM P+ + F ++
Sbjct: 361 KVFSDMRSRDVVPDLVCFSSMMS 383
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y L+ + G ++ A ++W M +++ P +Y+ ++ G A+A ++
Sbjct: 514 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVW 573
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++MI P + ++KG
Sbjct: 574 DEMISKNIKPTVMICNSMIKG 594
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGS 192
+ + PD Y LI R M++A + + M +E L PD TY ++ GF +
Sbjct: 613 SEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQ 672
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A + MI+ P+ + ++ G +
Sbjct: 673 MKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
>gi|359497557|ref|XP_003635566.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like, partial [Vitis vinifera]
Length = 253
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 17/170 (10%)
Query: 64 SLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
++ GK L L +LG FK D +K + + L++ E I
Sbjct: 29 NVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCI-------------LDKGSEAI 75
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
K K++ +PD Y LI L+++G++ EA + + M + FPD+ TYT +
Sbjct: 76 GVYKKM----KEEGVEPDLVTYNTLIFGLSKSGRVKEARKFLDIMAEMGHFPDAVTYTSL 131
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ G ++G+ A+ + E+M P + LL GL +L ++
Sbjct: 132 MNGLCREGNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLRMLERGIE 181
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD++ + P+ + Y LI + +M++AM ++E M ++ L P++ TY +I
Sbjct: 338 AVKVFDMMVHKGC-APNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLI 396
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G G DA+ ++ +M+ P+ + +RILL L + L
Sbjct: 397 HGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHL 440
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Query: 125 AVKIFDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A+ +FD K W +QPD IY LI L +TG + A+++ SM K + PD Y
Sbjct: 163 ALHLFD---KMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGT 219
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I KD A N++ +MI P + L+ L
Sbjct: 220 LIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALC 260
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + LI L G++ EA+ +++ M E PD Y +I G K G + A+
Sbjct: 141 QPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIR 200
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M K P+ +++ G L H L + + + LF E
Sbjct: 201 LLRSMEKGNCQPD-----VVVYGTLIHSLCKDRQQTQAFNLFSE 239
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L+ L + +++AM + +++ +L PD Q YT VI G + G DA ++
Sbjct: 422 PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDL 481
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++ P + I+ GL LL K
Sbjct: 482 FSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATK 515
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +PD Y LI +M+EA++V++ M + P+ +Y +I G+ K
Sbjct: 312 QSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIERMD 371
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
AM ++E+M + P + + L+ GL
Sbjct: 372 KAMYLFEEMCRQKLIPNTVTYNTLIHGLC 400
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y + L + G ++EA +++ M + D TY + +GFL++ + A+
Sbjct: 491 KPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQ 550
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ E+M+ + ++ LL G+L L E++FP
Sbjct: 551 LLEEML-ARGFSCDVSTTTLLVGMLSDDGLDQSEAHKLEDMFPH 593
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 128 IFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ + RK D + + Y LI + ++N A V + K PD+ ++T +I+
Sbjct: 93 VLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIK 152
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +G +A+++++ MI P+ + + L+ GL
Sbjct: 153 GLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLC 190
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I + R G++ +A ++ ++ + L P+ TY + G K G +A +
Sbjct: 457 PDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKL 516
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M ++ + + + +G L
Sbjct: 517 FMEMDENACSADGCTYNTITQGFL 540
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E AVK+FD++ ++ + PD Y LI + K+++AM ++E M +++ PD++
Sbjct: 314 QSEMDEAVKVFDMMVRKG-FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTK 372
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
TY ++ G G DA+ ++ +M+ P+ + + ILL L + L
Sbjct: 373 TYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHL 422
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G + A+++ SM + + PD YT +I
Sbjct: 145 ALHLFDKMIDEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSII 203
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A N++ M+ P+ + L+ L
Sbjct: 204 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALC 242
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P + Y +I L + G +NEA +++ M D PD TY + RGFL++ A+
Sbjct: 473 HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQ 532
Query: 199 IYEDMI 204
+ E+M+
Sbjct: 533 LLEEML 538
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L ++ + A +I D++ Q +PD Y L+ +M+EA++V++ M +
Sbjct: 271 TVVDALCKEGKVTEAHEIVDMM-IQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVR 329
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD +YT +I G+ K AM ++E+M + P+ + L+ GL
Sbjct: 330 KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLC 382
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 4/112 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ +L + + EAM + +++ +L PD Q Y +I G + G A ++
Sbjct: 404 PDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDL 463
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELFPEKHAYD 247
+ ++ P + I++ GL LL K D + P+ Y+
Sbjct: 464 FSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYN 515
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD I+ ++ AL + GK+ EA ++ + M + + PD TYT ++ G +A+ +
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M++ P+ + + L+ G
Sbjct: 324 FDMMVRKGFAPDVISYTTLING 345
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + LI L GK+ EA+ +++ M E P+ TY +I G K G+ + A+
Sbjct: 122 HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 181
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ + + ++ L
Sbjct: 182 RLLRSMEQGNCQPDVVIYTSIIDSLC 207
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD +Y +I + R G++ A ++ ++ + L P TY +I G K G +A
Sbjct: 438 NPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANK 497
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ +M + P+ + + +G L +
Sbjct: 498 LFMEMDGNDCSPDGCTYNTIARGFLQN 524
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + ++ A V + K PD T+T +IRG +G +A+++
Sbjct: 89 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 148
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ MI P + + L+ GL
Sbjct: 149 FDKMIDEGFQPNVVTYGTLINGLC 172
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ + +++W PD Y L+ L G++ +A+ ++ M PD TY+ ++
Sbjct: 355 AMYLFEEMCRKEWI-PDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 413
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+ +AM + + + S P+ + I++ G+
Sbjct: 414 DSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 452
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E + A K+FD++ + Y+PD + Y LI + ++++A Q++ M + L PD TY
Sbjct: 9 EVVEARKLFDVMITKG-YKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTY 67
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+I G + G +A +++++M K+ + P+ + ILL GL L
Sbjct: 68 NTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYL 115
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 51/87 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y L+ A+ ++G + +A +++ + + L P+ Q YT +I G K+G +A+
Sbjct: 131 KPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALE 190
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ +M + PP+E + ++++G L H
Sbjct: 191 AFRNMEEDGCPPDEFSYNVIIRGFLQH 217
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA ++++M K PD Y+ ++ G K G A +
Sbjct: 62 PDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRL 121
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M S P+ + + IL+ + +S KD ELF E
Sbjct: 122 FRAMQSSSLKPDLVMYNILVD-----AMCKSGNLKDARELFSE 159
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ IY +I L + G ++EA++ + +M ++ PD +Y +IRGFL+ + A++
Sbjct: 166 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVH 225
Query: 199 IYEDM 203
+ +M
Sbjct: 226 LIGEM 230
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + KQ PD Y +I L R GKM EA +V+ M + PD TYT +I
Sbjct: 99 AYKLFDEMEKQRIV-PDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLI 157
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G A +++ M++S P + + L GL
Sbjct: 158 DGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLC 196
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 49/85 (57%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I+ L ++GK+++A +V M + + PD+ YT +I GF K G+ A
Sbjct: 42 KPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYK 101
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M K P+ + + ++ GL
Sbjct: 102 LFDEMEKQRIVPDFIAYTAVICGLC 126
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI + G + A ++++ M K+ + PD YT VI G + G +A +
Sbjct: 78 PDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKV 137
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M P+E+ + L+ G
Sbjct: 138 FNKMFSRGVEPDEVTYTTLIDG 159
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q + Y L+ L ++G + +A+++ E M ++PD+ T+T ++ + K G A
Sbjct: 217 QLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHE 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +M+ P + F +L+ G +L
Sbjct: 277 LLREMLDRGLQPTVITFNVLMNGFCMSGML 306
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
AV+ L R + + A K+F+ + + +PD Y LI ++G+M +A + M
Sbjct: 119 TAVICGLCRCGKMMEADKVFNKMFSRG-VEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMV 177
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ L P+ TYT + G K G A + +M + L+ GL +R
Sbjct: 178 QSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIR 237
Query: 230 SKVK 233
VK
Sbjct: 238 QAVK 241
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I G++ + +++ + M+ + L P+ TY +I K G DA +
Sbjct: 8 PDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERV 67
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+MI P+ + + L+ G
Sbjct: 68 LREMINQGIVPDTVVYTTLIDGFC 91
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KI+ +R + +PD + LI AR GKM+ AM MR L PD YT VI
Sbjct: 280 ALKIYKEMRHRG-IKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVI 338
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +DA+ + ++M+ P+ + + LL GL
Sbjct: 339 GGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLC 377
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + Q +PD Y LI + R G +++A +W+ M ++FP+ TY+ +I
Sbjct: 420 ALQLFDTMLNQR-LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILI 478
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G DA ++MI P + + ++KG
Sbjct: 479 DSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 515
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I R G M++A++V + M PD TY ++ G K+ DA +
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + PP+ F L+ G
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHG 410
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIELERQEETIL-AVKIFDIIRKQ 135
+I G R + K QKF++ ++ + D++ LI +E+ + A K+ +++ K+
Sbjct: 512 IIKGYCR-SGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE 570
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
QPD Y LI + G + EA ++E M + + PD TY +I G + G+ +
Sbjct: 571 K-VQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKE 629
Query: 196 AMNIYEDMIKSPDPPEE 212
A ++++M++ P++
Sbjct: 630 AFQLHDEMLQRGFAPDD 646
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI GK+++A+Q++++M + L PD TY +I G + G A ++
Sbjct: 399 PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL 458
Query: 200 YEDMIKSPDPPEELPFRILL 219
++DM P + + IL+
Sbjct: 459 WDDMHSREIFPNHVTYSILI 478
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + KM++A ++ M KE + PD TY +I GF G+ +A
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 597
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I+E M P+ + ++ G
Sbjct: 598 IFEKMCAKGIEPDRYTYMSMING 620
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y ++ L R+G ++A +V++ M + PD +++T +I GF + G +A+
Sbjct: 223 KPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALK 282
Query: 199 IYEDMIKSPDPPEELPFRILL-----KGLLPHPL 227
IY++M P+ + F L+ +G + H +
Sbjct: 283 IYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAM 316
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I R+G +++ + + M + PD TY +I G++K+ DA +
Sbjct: 504 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 563
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
M K P+ + + +L+ G H
Sbjct: 564 LNMMEKEKVQPDVVTYNMLINGFSVH 589
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + ++ +A + MR+ + PD T+T +I G+ +G A+ +
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P+ + + L+ G+
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMC 447
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + ++ A R G AM + +SM + L P TY V++G + G A +
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M P+ F IL+ G
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFC 272
>gi|297844198|ref|XP_002889980.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335822|gb|EFH66239.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 517
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
K +K EE QK I T+V+ + I A L R+ + +A K+ D + + PD
Sbjct: 343 KAYKLFEEMRQKGIVTNVVTFTSL-IKAFL----REGNSSVAKKLLDQMTELGL-SPDRI 396
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y ++ L ++G +++A ++ M + ++ PD+ +Y +I G + G +A+ ++EDM
Sbjct: 397 FYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNSLISGLCRSGRVTEAIKLFEDM 456
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
P+EL F+ ++ GL+ L + K
Sbjct: 457 KGKECCPDELTFKFIIGGLIREKKLSAAYK 486
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L R+G++ EA++++E M+ ++ PD T+ +I G +++ + A +
Sbjct: 428 PDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIREKKLSAAYKV 487
Query: 200 YEDMI 204
++ M+
Sbjct: 488 WDQMM 492
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + + + L R K+ A+Q + M + PD +YT +I G + G DA+ I
Sbjct: 112 PDIWAFNIYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEI 171
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+S P+ L+ GL
Sbjct: 172 WNAMIRSGVSPDNKACAALVVGLC 195
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y LI R +A +++E MR++ + + T+T +I+ FL++G+ + A +
Sbjct: 323 CDVVSYSTLIETFCRASNTKKAYKLFEEMRQKGIVTNVVTFTSLIKAFLREGNSSVAKKL 382
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF--------EELFPEKHAYDP 248
+ M + P+ RI +L H V K + E+ P+ +Y+
Sbjct: 383 LDQMTELGLSPD----RIFYTTILDHLCKSGNVDKAYGIFNDMIEHEITPDAISYNS 435
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R+ + AV+ F Q +PD Y LI L R GK+ +A+++W +M + + P
Sbjct: 124 LCRENKVGFAVQTF-FCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSP 182
Query: 176 DSQTYTEVIRGFL 188
D++ ++ G
Sbjct: 183 DNKACAALVVGLC 195
>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
Length = 418
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+EA ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQGFSPDXITYNTLIYGLC 287
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q + PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQG-FSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLC 357
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + GK++ AM++++ M + PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 XDEMSMKGLKPDKITYTTLIDG 320
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M + PD
Sbjct: 148 KEGEIRLAQSVFDGITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDG 250
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D +YT +I G K+G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ +M+ P+ + I++
Sbjct: 368 MLREMLSVGLKPDTGTYTIVM 388
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L + EE A+ F +++ P+ Y Y LI L R K N+A W+ M+K
Sbjct: 574 SLLDALVKAEEINEALVCFQSMKEMKC-PPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 632
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ L P+ TYT +I G K G+ DA +++E + P+ F L++G+
Sbjct: 633 QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 684
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
IF+ IR + PD Y LI L + G+ E ++ +M+++ D++ Y V+ GF
Sbjct: 416 IFEDIRSYG-FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGF 474
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A I E+M + P + ++ GL
Sbjct: 475 CKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 509
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y + L+ AL + ++NEA+ ++SM++ P++ TY+ +I G + A
Sbjct: 567 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 626
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++DM K P + + ++ GL
Sbjct: 627 WQDMQKQGLVPNVVTYTTMISGL 649
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIF+ Q PD Y LI L + G+++EA +++E M + YT +I
Sbjct: 308 AYKIFESA-SQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 366
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
R F G D +++++I+ P+
Sbjct: 367 RNFFIHGRKEDGHKVFKELIRRGCKPD 393
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ +L R EE A +I D + + P+ ++ L + K+ EA +++ES
Sbjct: 260 IIDMLCLGGRVEE---AYRILDEMEHASLF-PNLLTVNIMVDRLCKARKLEEAYKIFESA 315
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ PD TY +I G K G +A ++E M+ + + + L++ H
Sbjct: 316 SQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGR- 374
Query: 229 RSKVKKDFEELFPE 242
K+D ++F E
Sbjct: 375 ----KEDGHKVFKE 384
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L ++ + A+ +F++++K +P++ Y +I L G++ EA ++ + M
Sbjct: 225 SILTCLGKKRKVDEALSLFEVMKKDA--EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 282
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
LFP+ T ++ K +A I+E + P+ + + L+ GL +
Sbjct: 283 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV-D 341
Query: 231 KVKKDFEELFPEKHAYDP 248
+ + FE++ H +P
Sbjct: 342 EAYRLFEKMLDAGHNANP 359
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
D+ A L+ R ++ +LAV + ++ ++P Y LI ALA + A+++
Sbjct: 15 DLAAALVRARRLDDAVLAVAVMRRLK----FRPAFSAYTVLIGALAEARRPERALELLRQ 70
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
M++ +T ++R ++G ADA+ + +++ S P+ + + + +
Sbjct: 71 MQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCI 122
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQ 135
+I G + K ++ L+ F + V R + D+V + LI+ L ++ A+ +F + K
Sbjct: 95 LITGFCKSKKSDDALRVF-EQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKS 153
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
P+ Y LI R GKM+EAM + E M + PD TYT ++ GF K D
Sbjct: 154 GSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDD 213
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A ++ M + P + F L+ GL
Sbjct: 214 AYDLLNQMTRKGLTPNVVTFTSLMDGLC 241
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI L + + +EA + E M PD TYT +I GF K DA+ +
Sbjct: 52 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+E ++ P+ + + L+ GL L+ +
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAI 144
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWE 166
+++ L + ER E +D++ + + PD + Y LI ++ K ++A++V+E
Sbjct: 60 LISGLCKAERASEA------YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFE 113
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ PD TY+ +I G K+G +A++++ MIKS P + + L+ G
Sbjct: 114 QLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ L R ++++A+ + MR++ P TY ++ G+ + +A
Sbjct: 228 PNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKF 287
Query: 200 YEDMIKSPD-PPEELPFRILLKGLL 223
M++ D PP + F I+++GL
Sbjct: 288 ---MLEEMDCPPNVVSFNIMIRGLC 309
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L + EE A+ F +++ P+ Y Y LI L R K N+A W+ M+K
Sbjct: 442 SLLDALVKAEEINEALVCFQSMKEMKC-PPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 500
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ L P+ TYT +I G K G+ DA +++E + P+ F L++G+
Sbjct: 501 QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 552
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
IF+ IR + PD Y LI L + G+ E ++ +M+++ D++ Y V+ GF
Sbjct: 284 IFEDIRSYG-FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGF 342
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A I E+M + P + ++ GL
Sbjct: 343 CKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 377
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y + L+ AL + ++NEA+ ++SM++ P++ TY+ +I G + A
Sbjct: 435 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 494
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++DM K P + + ++ GL
Sbjct: 495 WQDMQKQGLVPNVVTYTTMISGL 517
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIF+ Q PD Y LI L + G+++EA +++E M + YT +I
Sbjct: 176 AYKIFESA-SQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 234
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
R F G D I++++I+ P+
Sbjct: 235 RNFFIHGRKEDGHKIFKELIRRGCKPD 261
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ +L R EE A +I D + + P+ ++ L + K+ EA +++ES
Sbjct: 128 IIDMLCLGGRVEE---AYRILDEMEHASLF-PNLLTVNIMVDRLCKARKLEEAYKIFESA 183
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ PD TY +I G K G +A ++E M+ + + + L++ H
Sbjct: 184 SQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIHGR- 242
Query: 229 RSKVKKDFEELFPE 242
K+D ++F E
Sbjct: 243 ----KEDGHKIFKE 252
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L ++ + A+ +F++++K +P++ Y +I L G++ EA ++ + M
Sbjct: 93 SILTCLGKKRKVDEALSLFEVMKKDA--EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 150
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
LFP+ T ++ K +A I+E + P+ + + L+ GL +
Sbjct: 151 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV-D 209
Query: 231 KVKKDFEELFPEKHAYDP 248
+ + FE++ H +P
Sbjct: 210 EAYRLFEKMLDAGHNANP 227
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ PD + LI + G++++ ++++ M + L D+ TY +I GF K G
Sbjct: 399 SEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLN 458
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
A +I+E+M+ S P+ + FR +L GL L+
Sbjct: 459 GAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQ 493
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A + GK++ A +++ M + ++FP + TY+ +I GF K DA ++
Sbjct: 148 PDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHM 207
Query: 200 YEDMIKSPDPPEELPFRILLKGL------LPHPLLRSKVKKDFEELFPE 242
++ M+ P+ + L+ G L H + ++LF E
Sbjct: 208 FDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQE 256
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 12/140 (8%)
Query: 125 AVKIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
V +++RK D Q + IY ++ L + G +A ++ M ++ +FP+ TY
Sbjct: 61 TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKD 235
+I G+ G +DA + DMI+ P+ + F L+ + L R ++++
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180
Query: 236 FEELFPEKHAYDPPEEIFGK 255
+FP Y + F K
Sbjct: 181 ---IFPTTITYSSMIDGFCK 197
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
VK + +R +D Y P Y ++ + ++ EA Q+ +SM E PD
Sbjct: 347 VKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDV 406
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T++ +I+G+ K G D + ++ +M + + + + L+ G
Sbjct: 407 VTFSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNALIHGFC 452
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + I A IF + ++ + P+ Y +I GK ++A Q+ M +
Sbjct: 85 AIVDRLCKDGNHIKAQNIFTEMHEKGIF-PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIE 143
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ PD T++ +I F+K+G + A +Y +M++ P + + ++ G H L
Sbjct: 144 RNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRL 201
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 50/110 (45%), Gaps = 7/110 (6%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ +QPDA Y ++ + + G A+ + M + + + Y+ ++ KDG+
Sbjct: 38 EEGHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHI 97
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFE 237
A NI+ +M + P L + ++ G + LLR ++++ +
Sbjct: 98 KAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNID 147
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 5/107 (4%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + D Y LI + G A ++ M + + P + TY ++ GF K +
Sbjct: 330 NGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEE 389
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A + + M+ P+ + F L+KG ++ D ELF E
Sbjct: 390 ARQMVDSMVSEGCSPDVVTFSTLIKG-----YCKAGRVDDGLELFSE 431
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L ++ +M EA Q+ E+M K + P+ TY +I G+ K G A +
Sbjct: 206 PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQL 265
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPE 250
E MI+S P+ + F L+ G +SK+ K E L K P
Sbjct: 266 IERMIQSGTHPDVVTFNSLISGFCQ----KSKIDKACEVLHLMKKGLCAPN 312
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
R+ PD+ ++ L+ L + +++EA Q+ E M + + PD TY +I G K
Sbjct: 164 RESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYR 223
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A + E M+K P + + L+ G
Sbjct: 224 MEEARQLLETMVKRKVRPNLVTYNTLIYG 252
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI +TG A Q+ E M + PD T+ +I GF + A
Sbjct: 240 RPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACE 299
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M K P + + +L+ GL
Sbjct: 300 VLHLMKKGLCAPNLVTYNVLISGLC 324
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVW-ESMRKEDLFPDSQTYTEVIRGFLKDGS 192
K+ + PD + ++ AL TG ++ AMQ + ES+ + PDS + ++ G K
Sbjct: 132 KERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESV---ECAPDSVLFNILVHGLCKANQ 188
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++A + E+M + P+ + + L+ GL
Sbjct: 189 LSEARQMIEEMSERGIVPDVVTYNSLIDGLC 219
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KMNEA ++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
Y+ M+ P+ + + L+ GL
Sbjct: 263 TYKQMLSQCFLPDLITYNTLIYGLC 287
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD Y LI L + G + +A + + MR + L PD TYT +I G K+G A
Sbjct: 271 CFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSA 330
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ E M+K +++ + L+ GL
Sbjct: 331 FELRETMVKESIRLDDVAYTALISGLC 357
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + GK++ AM+ ++ M + PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 LDEMRMKGLKPDKITYTTLIDG 320
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E +A +FD I K W +P + L+ R G +++ ++ +M + PD
Sbjct: 148 KEGEIWIAQSVFDSITK--WGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A +++ +M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDG 250
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G ++ A ++ E+M KE + D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ P+ + +++
Sbjct: 368 MLREMLSVGLKPDNGTYTMIIN 389
>gi|225424625|ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial [Vitis vinifera]
gi|296081374|emb|CBI16807.3| unnamed protein product [Vitis vinifera]
Length = 519
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y ++ L +TGKM A V+ M + + PD +Y +I G + ++AM++
Sbjct: 392 PDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHL 451
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
YEDM P+E+ F++++ GL+
Sbjct: 452 YEDMHTGGPCPDEVTFKLIIGGLI 475
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 6/118 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A R G N A ++ + M L PD YT ++ K G A ++
Sbjct: 357 PDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSV 416
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP-PEEIFGKL 256
+ DM++S P+ + + L+ G L R+ + L+ + H P P+E+ KL
Sbjct: 417 FCDMVESGITPDVVSYNALING-----LCRASRVSEAMHLYEDMHTGGPCPDEVTFKL 469
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + Y + L +++ A+ V ++M ++ PD TYT VI G + G A+
Sbjct: 110 YVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAV 169
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
I+ +M++ P+E R L+ GL
Sbjct: 170 EIWRNMVRKGFSPDEKACRALVLGLC 195
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+PD Y +I L R G+ + A+++W +M ++ PD + ++ G DG
Sbjct: 146 EPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDG 198
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y +I AL A +++E M + + PD T+T +I+ FL++GS NI
Sbjct: 322 CDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSS----NI 377
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ ++ LP R+L ++ H
Sbjct: 378 AKKLLDQMTGLGLLPDRVLYTTIVDH 403
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L R +++EAM ++E M PD T+ +I G + + + A +
Sbjct: 427 PDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRV 486
Query: 200 YEDMIK 205
++ M++
Sbjct: 487 WDQMME 492
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y +L+ L + ++++A + + + D +Y +I+ A
Sbjct: 286 EPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYK 345
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++E+M P+ + F IL+K L
Sbjct: 346 LFEEMGGKGITPDVVTFTILIKAFL 370
>gi|357129672|ref|XP_003566485.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 564
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQD-WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L++L + + +I+R ++ + D Y L+ L R G+ EA V E M +
Sbjct: 153 ILVKLHSWRSSRFDLAYKEILRMRELGVEADVGTYSTLVTGLCRVGRTGEAWGVLEWMLE 212
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
E +P QTYT +++G+ +G +AM + M ++ PP + + +L++ L
Sbjct: 213 EGCYPMVQTYTPIVQGYCHEGRVEEAMEVMATMERAGCPPNVVTYNVLIRALC 265
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI AL + +E QV R +D P + TY + G K G +A+
Sbjct: 252 PNVVTYNVLIRALCDAARFDEVKQVLAESRSKDWTPSTVTYNTFMNGLCKKGMAKEALEQ 311
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M+ P + ILL L
Sbjct: 312 LNVMLGEGLDPSDFTLSILLNCLC 335
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
T+ A ++F+ ++ + Y PD +Y LI + G++ +A ++W M + P+ +Y
Sbjct: 349 TLQAFEVFNALKDRG-YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYN 407
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
+I GF K G+ +AM +Y+ M+ S L L+ GL H R+ DF P
Sbjct: 408 TLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHG--RTDEAYDFFREMP 465
Query: 242 EKH 244
K+
Sbjct: 466 CKN 468
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y+++I + +A +V+ +++ PD YT +I GF K G DA
Sbjct: 330 NPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASK 389
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +MI P E + L+ G
Sbjct: 390 LWFEMIDKGFLPNEYSYNTLIYGFC 414
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI L + G + EA ++W M L P T +I G + G + M
Sbjct: 505 QPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGME 564
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
M+KS P++ F L++ L+
Sbjct: 565 WLITMLKSNLKPQKETFYKLIQSLI 589
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ ++ PD IY LI A+ ++GK+ +A +++ + + L PD +++T +I G ++G
Sbjct: 172 QNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLL 231
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+A + M + PP+ + ++++G L + S+ ++ F+E+F + D
Sbjct: 232 DEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNN-GASRAEQLFQEMFDRGFSADA 285
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA + L+ L + GK++EA + ++M ++ + P++ TY+ ++ G+L +A +
Sbjct: 8 PDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKV 67
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE-----LFPEKHAYDP 248
+ MI P+ L + IL+ G + + K+ F+E L P Y+
Sbjct: 68 FNAMITRGCIPDVLSYNILINGCCKAQRI-DEAKQIFDEMSFRGLIPNTATYNT 120
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 12/133 (9%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q A K+F+ + + PD Y LI + +++EA Q+++ M L P++
Sbjct: 58 QNRVFEARKVFNAMITRGCI-PDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTA 116
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
TY ++ GF K + +++DM P+ + + I L GL L + E
Sbjct: 117 TYNTLLGGFWK-----QKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQAL-----E 166
Query: 239 LFPE-KHAYDPPE 250
LF E ++ Y P+
Sbjct: 167 LFREMQNNYLNPD 179
>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 418
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM +A +++E M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++E+M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDG 250
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLC 357
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 689
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 105 LKMDIVAVLIELERQEETILAVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAM 162
+K+D+V ++ + FD+ ++ P+ Y LI L + G++ EA
Sbjct: 244 VKLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAF 303
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ + K L P TY+ +I GF K G+ +YEDMIK PP+ + + +L+ GL
Sbjct: 304 GIYCQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGL 363
Query: 223 LPHPL----LRSKVKKDFEELFPEKHAYD 247
L LR VK + + P ++
Sbjct: 364 CKQGLMLHALRFSVKTLGQSIRPNVVVFN 392
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D ++ I + G + A V++ M + + P+ TYT +I+G +DG +A IY
Sbjct: 247 DVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIY 306
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++K P + + L+ G + LRS +E++ K Y P I+G L
Sbjct: 307 CQILKRGLEPSVVTYSSLIDGFCKYGNLRSGFAL-YEDMI--KMGYPPDVVIYGVL 359
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
L + G+++EA ++ + PD Y +IRG K G +A +YE M+++ P
Sbjct: 599 GLCKRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVKP 658
Query: 211 EELPFRIL 218
++L R L
Sbjct: 659 DDLLQRAL 666
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
T+ A ++F+ ++ + Y PD +Y LI + G++ +A ++W M + P+ +Y
Sbjct: 313 TLQAFEVFNALKDRG-YAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYN 371
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
+I GF K G+ +AM +Y+ M+ S L L+ GL H R+ DF P
Sbjct: 372 TLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHG--RTDEAYDFFREMP 429
Query: 242 EKH 244
K+
Sbjct: 430 CKN 432
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y+++I + +A +V+ +++ PD YT +I GF K G DA
Sbjct: 294 NPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASK 353
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +MI P E + L+ G
Sbjct: 354 LWFEMIDKGFLPNEYSYNTLIYGFC 378
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI L + G + EA ++W M L P T +I G + G + M
Sbjct: 469 QPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGME 528
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
M+KS P++ F L++ L+
Sbjct: 529 WLITMLKSNLKPQKETFYKLIQSLI 553
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KMN+A +++ M L P+ T+T +I G K GS AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
Y++M++ P+ + + L+ GL
Sbjct: 263 TYKEMLRQGFSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ R G ++E ++ +M + PD
Sbjct: 148 KEGEMRLAQSVFDEITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++ +MI + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDG 250
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++ + + +Q + PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMETYKEMLRQG-FSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A+ + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLC 357
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI +TG ++ AM+ ++ M ++ PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A+ + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ P+ + +++
Sbjct: 368 MLREMLSVGLKPDNGTYTMIIN 389
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 76/148 (51%), Gaps = 4/148 (2%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQ 135
+I GL R E ++ ++ VL K DIV A++ L R++ A+K+F + +Q
Sbjct: 228 LISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQ 287
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
Y+P+ Y LI L + ++NEA +++ + K L PD+ TYT I G K G D
Sbjct: 288 -GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVED 346
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ + +DM + P+ + ++ GL
Sbjct: 347 ALLMLKDMDEKGCVPDVVSHNAVINGLC 374
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 91 EKLQKFIKTHVLR-LLKMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
EK +F++ +++ L + + I L R A +FD +RK ++ P+ Y L
Sbjct: 33 EKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQTVFDGMRKHGFW-PNRITYNAL 91
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
+ L G+M++A ++E M K PD TY ++ GF K G +A+ I++ +K
Sbjct: 92 LSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGF 151
Query: 209 PPEELPFRILLKGLL 223
P+ + + L+ G
Sbjct: 152 VPDVVTYNALINGFC 166
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD Y L+ + GK++EA+++++ K PD TY +I GF K +A
Sbjct: 116 YSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 175
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
I + M+ P+ + + L+ GL +
Sbjct: 176 RILQRMVSESLVPDVVTYNSLVNGLCKN 203
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIFD K+ + PD Y LI + K++EA ++ + M E L PD TY ++
Sbjct: 139 ALKIFDGAVKR-GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLV 197
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G +A + D SP+ + + L+ GL
Sbjct: 198 NGLCKNGRVDEARMLIVDKGFSPNV---ITYSTLISGLC 233
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 34/120 (28%)
Query: 138 YQPDAYIYKDL----------------------------------IIALARTGKMNEAMQ 163
Y PDAY L I L R ++ +A
Sbjct: 12 YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQT 71
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
V++ MRK +P+ TY ++ G G +DA +YE MIK+ P+ + + LL G
Sbjct: 72 VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 118 RQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
RQE I A+ +FD + ++ PD Y LI L + GK+++A ++ +M + P+
Sbjct: 447 RQEGRIKEAITLFDAMIEKGRV-PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 505
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
TY +I G +A+ ++ M++ P+ + + ++ L ++
Sbjct: 506 VYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMV 557
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK---DGSPAD 195
P+A + LI R GK +AM ++ M K + P TY ++ G K +G +
Sbjct: 395 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 454
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ +++ MI+ P+ + + L+ GL
Sbjct: 455 AITLFDAMIEKGRVPDVVTYSALIDGL 481
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 138 YQPDAYIYKDLIIALART-GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ P+ Y LI L R ++ A Q+ E M PD +Y +I G ++ ++A
Sbjct: 218 FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEA 277
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDP 248
+ ++ +++ PE + IL+ GLL +V + F ELF KH +P
Sbjct: 278 LKLFGSVLRQGYEPEVPTYNILIDGLLKE----DRVNEAF-ELFSGLVKHGLEP 326
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y LI L K++EA++++ +M ++ PD+ TY +I K A+ +
Sbjct: 504 PNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALAL 563
Query: 200 YEDMIKSPDPPEELPFRILLKGLLP 224
++ +++ P + L+ GL
Sbjct: 564 FDGSLEAGVVPTSGMYFSLIDGLCA 588
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA Y I L + G++ +A+ + + M ++ PD ++ VI G K+ +A
Sbjct: 325 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 384
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M P + F L+ G
Sbjct: 385 LLSGMEAKGCSPNAISFNTLICG 407
>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
Length = 484
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y++ LI A A+ GK+++AM V+ MR++ L PD+ TY VI K G DAM
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+E MI P + + L+ L
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSLC 455
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V SM K + P+ +TY ++ G+ G P +A+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYLCKNGRC-TEARKMFDSM--TKRGLKPEITTYGTL 345
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+
Sbjct: 297 SDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALV 356
Query: 195 DAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P F IL+
Sbjct: 357 EMHGLLDLMVRNGIHPNHYVFSILI 381
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+A L + + ++ A+++ + K + P+ Y ++ +G+ EA+ + M
Sbjct: 240 IIAALCKAQAMDK---AMEVLTSMVK-NGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKM 295
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ + PD TY ++ K+G +A +++ M K PE + LL+G
Sbjct: 296 HSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQG 348
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P+ + Y L+ L + EA+++ + M + D PD +YT VI GF K+G A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
Y +M+ P + + ++ L
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALC 245
>gi|356523086|ref|XP_003530173.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g17670-like [Glycine max]
Length = 456
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
Query: 64 SLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
++ GK L +EA+ ++ L ++ KL F+ +++ + L R E
Sbjct: 230 NVCNGKNLNLREAMRLVSVLH---EEGFKLDCFVYNTIMKGYCV--------LSRGSE-- 276
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+++++ + K++ +PD Y LI L+++G++ EA ++ M ++ FPD TYT +
Sbjct: 277 -AIEVYNKM-KEEGVEPDLVTYNTLIFGLSKSGRVTEARKLLRVMAEKGYFPDEVTYTSL 334
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ G + G A+ + +M P + LL GL L+ VK
Sbjct: 335 MNGLCRKGDALGALALLGEMEAKGCSPNACTYNTLLHGLCKARLVEKAVK 384
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI A AR G M++AM ++E M+ + + PD+ T+ VI + G DA++
Sbjct: 330 PNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 389
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M+ PP E +R L++G H
Sbjct: 390 FNHMVDIGVPPSEAVYRCLIQGCCNH 415
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ + L+ G M EA + ++M + P+ Y ++ G+ K+G
Sbjct: 466 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 525
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
DA+ ++ DM+ P + + I+L GL + KK F E+
Sbjct: 526 DALTVFRDMLHKGVKPTSVLYNIILHGLF-QARRTTAAKKMFHEM 569
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 124 LAVKIFDIIRKQDWYQPDA-------YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
LAV++F R W P A Y Y LI R + A+ V+ + + L PD
Sbjct: 99 LAVELFK--RMDRWACPHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPD 156
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+Y +I GF K+G A ++ MI+ P+ + + L+ GL
Sbjct: 157 VCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLC 203
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L +T +M ++ +V E M + P+++TY +I G+ G +++
Sbjct: 189 SPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVR 248
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++++M S P + + L H
Sbjct: 249 VFKEMSSSGLIPCVVNCNSFIHALCRH 275
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ +F + + PD Y LI ++ G++++A +++ M ++ + PD TY +
Sbjct: 140 LALAVFGRLLRTGL-GPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 198
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
I G K + + E M+ + P + L+ G
Sbjct: 199 IDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYG 236
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K F + R + + +P+ +Y LI A+ ++G + +A +++ + + L P++Q YT +I
Sbjct: 466 KAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTII 525
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K+G +A+ + +M + PP+E+ + ++++G L H
Sbjct: 526 NGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHH 566
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 95/201 (47%), Gaps = 9/201 (4%)
Query: 30 FSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSL---WRGKKLIGKEALFVILGLKRF 86
FS++ K SP + F + I GL + + +L R ++ F +L
Sbjct: 261 FSYMKVKGISPDI-FTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTIC 319
Query: 87 KDDE-EKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDA 142
K+ + + Q +KT ++ D+V +++ + E + A K+FD + + +PD
Sbjct: 320 KEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGC-KPDV 378
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ Y LI + +++EA Q++ M + L P++ +Y +I G + GS +A N++++
Sbjct: 379 FSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKN 438
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M + + P + ILL G
Sbjct: 439 MHTNGNLPNLFTYSILLDGFC 459
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G + EA ++++M P+ TY+ ++ GF K G A +
Sbjct: 411 PNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRL 470
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+ M + P + + IL+ + LR +K F ELF + P +I+
Sbjct: 471 FRAMQSTYSKPNLVMYNILIDAMCKSGNLRD-ARKLFSELFVK--GLQPNAQIY 521
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + LI L + GK +AM++++ M PD TYT +I G K G A A
Sbjct: 165 QPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAG 224
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ + M ++ P + + ++
Sbjct: 225 LLKKMEEAGCQPNVVTYSTII 245
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+A IY +I L + G ++EA++ + +M ++ PD +Y +IRGFL + A+
Sbjct: 515 QPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQ 574
Query: 199 IYEDM 203
+ +M
Sbjct: 575 LIGEM 579
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + + +PD Y Y +I L + G+ A + + M + P+ TY+ +I
Sbjct: 187 AMELFDDMVARGC-RPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTII 245
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A++I+ M P+ + L++GL
Sbjct: 246 DSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLC 284
>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + K++ +PD Y LI L++ G+++EA + + M + FPD+ TYT ++
Sbjct: 279 AIQVFKKM-KEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLM 337
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
G + G A+ + EDM P + LL GL LL ++
Sbjct: 338 NGLCRKGDALGALALLEDMEMKGCSPNSCTYNTLLYGLCKERLLEKGIE 386
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ I+R + ++PD ++Y ++ K ++A+QV++ M++E + PD TY +I
Sbjct: 244 AMRLLGILR-ECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLI 302
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G ++A + M++S P+ + + L+ GL
Sbjct: 303 FGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMNGLC 341
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 45/93 (48%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D +R +P+ Y LI + + + EAM++ +R+ PD Y +++G+
Sbjct: 213 DEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCM 272
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+DA+ +++ M + P+ + + L+ GL
Sbjct: 273 LSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGL 305
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 107 MDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
++ ++L++ L R+ + A+ + D + + Y PDA Y L+ +L R + EA ++
Sbjct: 273 VETYSILMQGLCRKSQVKTALGVLDEMLNKG-YVPDALTYNTLLNSLCRKMNLREAYRLL 331
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M+ PD Y VI GF ++G DA I DM ++ P L +R L+ GL
Sbjct: 332 SKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLC 389
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y LI A + K++ A ++ M K+ PD +TY+ +++G + A+
Sbjct: 235 SPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALG 294
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M+ P+ L + LL L
Sbjct: 295 VLDEMLNKGYVPDALTYNTLLNSLC 319
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ Q + +LA++IF++ +Q ++ Y LI L R + + + MRK+
Sbjct: 107 IASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQMRKDGCPY 166
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
+ ++I + + G P +A+ + M++ P F +LL L+ H L + +
Sbjct: 167 TPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETAL--- 223
Query: 236 FEELFPEKHAY 246
LF + H +
Sbjct: 224 --SLFKKLHEF 232
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 33/80 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y+ L+ L GK +EA E M P Y +I G +G +A +
Sbjct: 376 PNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEV 435
Query: 200 YEDMIKSPDPPEELPFRILL 219
M K P E + +LL
Sbjct: 436 LVMMTKQTLAPHESTWSVLL 455
>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 63/115 (54%), Gaps = 1/115 (0%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ ++ PD IY LI A+ ++GK+ +A +++ + + L PD +++T +I G ++G
Sbjct: 96 QNNYLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLL 155
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+A + M + PP+ + ++++G L + S+ ++ F+E+F + D
Sbjct: 156 DEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNN-GASRAEQLFQEMFDRGFSADA 209
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + +++EA Q+++ M L P++ +Y +I G + G +A +
Sbjct: 8 PNVLSYNILINGSCKALRIDEAKQLFDEMSFRGLIPNTASYNTLISGLFQVGRILEAKEL 67
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++DM P+ + + ILL GL
Sbjct: 68 FKDMHAQGCSPDLVTYSILLDGL 90
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 50/83 (60%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++YIY LI R+G++++ ++++ M + FPDS TYT ++ GF + G + AM +
Sbjct: 290 PNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLGFSRRGHTSMAMEL 349
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M++ P + +L++ L
Sbjct: 350 LQEMVREGHTPALATYNVLIRSL 372
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F ++K PD +Y LI L + GK++EA+++ E M ++ + PD +TY VI
Sbjct: 136 ALEVFSNMQKAGC-MPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDCRTYNIVI 194
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD-FEELFPEK 243
G A + + M + P+ + + LL GL L R+ D F+E+ K
Sbjct: 195 DVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGL--KKLRRTDEACDLFDEMQANK 252
Query: 244 HAYDPPEEIFGKL 256
P FG L
Sbjct: 253 CM--PDLTTFGTL 263
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 4/109 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L +L R +E A +FD ++ PD + LI LA+ G+M +A++ + K
Sbjct: 232 LKKLRRTDE---ACDLFDEMQANKC-MPDLTTFGTLIDTLAKAGRMEDALEQSARLVKMG 287
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
P+S Y +I GF + G +++DMI+ P+ + + IL+ G
Sbjct: 288 HVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYTILVLG 336
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + Y L+ AL + G+ +A++V+ +M+K PD+ Y +I K G +A+ +
Sbjct: 116 DVFTYSYLMDALGKAGRAAKALEVFSNMQKAGCMPDTVVYNVLISCLGKQGKVDEALELL 175
Query: 201 EDMIKSPDPPEELPFRILL 219
EDM + P+ + I++
Sbjct: 176 EDMNRKGIMPDCRTYNIVI 194
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ Y L++ +R G + AM++ + M +E P TY +IR G DA +
Sbjct: 325 PDSITYTILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTL 384
Query: 200 YEDMIKSPDPPEELPFRIL 218
+++MI P+ + L
Sbjct: 385 FKEMIAKGFNPDMQTYSAL 403
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 46/86 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y LI L GK EA+Q+ M ++D P++ TY +I KDG ADA+
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE 373
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
I E M K P+ + + ILL GL
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCA 399
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI A + GKM+EAM + M+ L D YT +IRGF G +++++++
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 208 DPPEELPFRILLKGLL 223
D P + + L++G
Sbjct: 278 DSPCAITYNTLIRGFC 293
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + Y L+ +L + G +++A +++E M++++ FPD ++ +I G LK G A +
Sbjct: 526 QPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAES 585
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M ++ P+ + L+ L
Sbjct: 586 LLVGMSRAGLSPDLFTYSKLINRFL 610
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+R D Y +I +TG +N A + MR +L P Y ++ K+
Sbjct: 490 IVRNSDTYTA-------MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKE 542
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
GS A ++E+M + + P+ + F I++ G L ++S
Sbjct: 543 GSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKS 582
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I+D++ ++ D L+ + + G +N+AM++W+ + + +S TYT +I
Sbjct: 443 ALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMI 501
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL----- 239
GF K G A + M S P + LL L L + + FEE+
Sbjct: 502 DGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL-DQAWRLFEEMQRDNN 560
Query: 240 FPEKHAYD 247
FP+ +++
Sbjct: 561 FPDVVSFN 568
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 5/121 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ +++ ++D +P+A Y +I L + G + +A+++ E M+K PD+ TY ++
Sbjct: 336 ALQLLNLMIEKD-EEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILL 394
Query: 185 RGFLKDGSPADAMNIYEDMIK--SPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G G +A + M+K S P+ + + L+ GL L + D +L E
Sbjct: 395 GGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQAL--DIYDLLVE 452
Query: 243 K 243
K
Sbjct: 453 K 453
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D +Y LI G+++ +++ + + P + TY +IRGF K G +A
Sbjct: 244 EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASE 303
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+E MI+ P + L+ GL
Sbjct: 304 IFEFMIERGVRPNVYTYTGLIDGLC 328
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTE 182
AV+I ++++K+ +PD Y L+ L G ++EA ++ M K+ + PD +Y
Sbjct: 371 AVEIVELMKKR-RTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNA 429
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I G K+ A++IY+ +++ + + ILL L
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTL 470
>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
Length = 418
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+EA +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + GK++ AM++++ M + L PD TY +I G K G A N+
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M P+++ + L+ G
Sbjct: 299 INEMSMKGLKPDKITYTTLIDG 320
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G KDG A + MI+ +++ + L+ GL
Sbjct: 318 IDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLC 357
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E L+ +FD IRK W +P + L+ R G +++ ++ +M + PD
Sbjct: 148 KEGEIRLSQSVFDAIRK--WGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A ++ +M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDG 250
>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 548
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + K Y+P Y LI L G++ EA +VW+ M + P++ TY +I
Sbjct: 399 ARKLFDELEKG--YKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALI 456
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+GF K G P + ++ +M+ P ++ +++L+ L
Sbjct: 457 KGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSL 494
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VL +E+ A K+FD I PD +Y LI RTGK+ +A ++ + M
Sbjct: 244 TTVLSAYCAKEDLKGAQKLFDDIIAGG-RVPDVTMYTVLIDGYCRTGKIQDAARIMDEME 302
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI---KSPDPP 210
+ P+ TY+ VI K+G A+A N+ +M+ +PD P
Sbjct: 303 AAGVQPNEVTYSVVIEACCKEGKSAEACNLMREMLGAGHTPDTP 346
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 34/120 (28%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ------------------- 178
+ PD + ++ + + GK EA Q+W M K+++ PD+
Sbjct: 341 HTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTITNTLIYWLCKSGMVREAR 400
Query: 179 ---------------TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G ++G +A +++DM++ P + + L+KG
Sbjct: 401 KLFDELEKGYKPSLLTYNSLISGLCENGELQEAGKVWDDMVERRYEPNAMTYEALIKGFC 460
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D QPD + Y L+ + + G ++EA+++ M + P+ TYT ++ GF G P D
Sbjct: 205 DGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPED 264
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
A+++++ M + P E +R L+ G
Sbjct: 265 AVHVFDTMKEKGVSPNEASYRTLVHG 290
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 129 FDIIRK-QDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD + +W +P+A+ Y L+ AL G +N+A+ + M+K+ + PD+ ++ I
Sbjct: 511 FDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILS 570
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F + A NI+ M++ P+ + L+K L
Sbjct: 571 FCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALC 607
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI ++ G ++ A V + + + L PD T+T +I G DA +
Sbjct: 454 PNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDC 513
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL------LRSKVKKDFEELFPEKHAYDPPEEIF 253
+ +M + P + +L+ L L +K+KKD + P+ ++++ P F
Sbjct: 514 FNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKD--GITPDAYSFNAPILSF 571
Query: 254 GKL 256
++
Sbjct: 572 CRM 574
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
K+D PDAY + I++ R K+++A ++ +M + + PD+ TY +I+ +
Sbjct: 553 KKDGITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDE 609
>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 418
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + K+++A ++++ M L P+S ++T +I G KDG AM
Sbjct: 203 QPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
IY+ M+ P+ + + L+ GL + L+
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLCKNGDLK 293
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDG 250
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + LI + G+++ AM++++ M + L PD TY +I G K+G A ++
Sbjct: 239 PNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M P+++ + L+ G
Sbjct: 299 INEMSMKGLKPDKITYTTLIDG 320
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 418
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ +LA++I+ + Q PD Y LI L + G + +A + + M + L PD
Sbjct: 253 KNGRVVLAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDK 311
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT +I G K+G A+ + MIK +++ + L+ GL
Sbjct: 312 ITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A++ + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 10/103 (9%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
ET++A ++ +P+ +Y +I AR+G+M EA +++E M P+ TY
Sbjct: 360 ETMVAARV----------KPNVVLYSAMIDGFARSGRMTEAEKLFEEMVDAKCIPNIVTY 409
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++RG+ + + A++ +E+MIK P + + IL+ GL
Sbjct: 410 SSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSILISGLC 452
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI L G++ +AM VW++M PD+ YT +++G G + +
Sbjct: 439 PTAISYSILISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLCMSGMVDGGLRL 498
Query: 200 YEDMIKSPDP-PEELPFRILLKGLL 223
+ DM+ D P+ + + +LL L+
Sbjct: 499 FNDMLAKGDAKPDVISYNVLLDALI 523
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P +++ +I ++G+++ A+ VWE+M + P+ Y+ +I GF + G +A
Sbjct: 333 APSEFVFSAVITGFCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDGFARSGRMTEAEK 392
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
++E+M+ + P + + +++G H S+ +EE+
Sbjct: 393 LFEEMVDAKCIPNIVTYSSMVRGYF-HIANSSRALSTWEEMI 433
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
Query: 68 GKKLIGKEALF--VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEET 122
G+ L E +F VI G + + + L + +T V +K ++V A++ R
Sbjct: 329 GQGLAPSEFVFSAVITGFCKSGEVDRALMVW-ETMVAARVKPNVVLYSAMIDGFARSGRM 387
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A K+F+ + P+ Y ++ + A+ WE M K P + +Y+
Sbjct: 388 TEAEKLFEEMVDAKCI-PNIVTYSSMVRGYFHIANSSRALSTWEEMIKVGCVPTAISYSI 446
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I G G DAM ++++MI P+ + + ++KGL
Sbjct: 447 LISGLCDVGRLKDAMMVWKNMIGRGCAPDTIAYTSMMKGLC 487
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 129 FDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+I+R+ + P Y ++ L + G++ +A +V + M + L P ++ VI G
Sbjct: 286 MNIMRRMENEGIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITG 345
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
F K G A+ ++E M+ + P + + ++ G RS + E+LF E
Sbjct: 346 FCKSGEVDRALMVWETMVAARVKPNVVLYSAMIDG-----FARSGRMTEAEKLFEE 396
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
VL + R + AVK+F ++ + A Y L+ L G+ AM + M E
Sbjct: 237 VLKAMLRAGDVNGAVKLFRFMQLKGCTL-TAVTYNVLLHGLLLCGEARAAMNIMRRMENE 295
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P TY V+ G +K G DA + ++M P E F ++ G
Sbjct: 296 GIVPGLMTYGAVVDGLVKCGRVEDAWKVAQEMGGQGLAPSEFVFSAVITGFC 347
>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
Length = 791
Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y++ LI A A+ GK+++AM V+ MR++ L P++ TY VI K G DAM
Sbjct: 368 HPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ GL
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGL 451
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + +L+ L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYL 311
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+F+++ + +P+ Y LI GKM+EAM++ M L P++
Sbjct: 488 KEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNT 546
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G+ K DA+ ++++M S P+ + + I+L+GL
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLF 592
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILI 378
Score = 43.5 bits (101), Expect = 0.091, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY+ ++ K+G +A I
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQG 345
Score = 40.4 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + +M +A+ +++ M + PD TY +++G + A A
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+Y + +S E + I+L H L ++K+ D ++F
Sbjct: 603 LYVRITESGTQIELSTYNIIL-----HGLCKNKLTDDALQMF 639
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
P+ + Y L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAAL 241
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G ++A + M + PD TY +I K + AM +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + +L G
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHG 275
>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
Length = 439
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D + Y L+ L + G+ +E +V+E M +E P TYT ++ K GS DA
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQ 338
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ M+ PP+ + +LL+GL + +R+ + FE++ E+ PP +
Sbjct: 339 VIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEF-FEKILRERC---PPCAV 388
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 92 KLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
+L K +K LR ++ L +Q T ++F+ + ++ P Y L+ A
Sbjct: 268 ELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGC-NPSVVTYTTLVHA 326
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ G + +A QV SM + + PD TYT ++ G ++G A +E +++ PP
Sbjct: 327 HCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPC 386
Query: 212 ELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249
+ + L++G L+ VK + E+ + A DP
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKY-YVEMLDRRLAPDPA 423
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 125 AVKIFDIIRKQDWY-QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+++F ++ +D + +P+ + LI L + ++ A ++ + M+ DL D+ TYT +
Sbjct: 229 ALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTL 288
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ G K G ++ ++E+M++ P + + L+
Sbjct: 289 MDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ D++ K+ +PD + +I + G++ EA ++ E++ P++ TYT +I GF
Sbjct: 162 LLDMVEKKSA-KPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGF 220
Query: 188 LKDGSPADAMNIYEDMIKSPD---PPEELPFRILLKGLL 223
K G+ ++A+ +++ ++ S D P + F L+ GL
Sbjct: 221 CKSGNLSEALQLFK-VLSSRDHHAEPNVVTFNALISGLC 258
>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
Length = 648
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI A AR G M++AM ++E M+ + + PD+ T+ VI + G DA++
Sbjct: 237 PNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 296
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M+ PP E +R L++G H
Sbjct: 297 FNHMVDIGVPPSEAVYRCLIQGCCNH 322
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L +T +M ++ +V E M + P+++TY +I G+ G +++
Sbjct: 96 SPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVR 155
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
++++M S P + + L H R K KD
Sbjct: 156 VFKEMSSSGLIPCVVNCNSFIHALCRHN--RIKEAKDI 191
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ +F + + PD Y LI ++ G++++A +++ M ++ + PD TY +
Sbjct: 47 LALAVFGRLLRTGL-GPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNSL 105
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
I G K + + E M+ + P + L+ G + + V+
Sbjct: 106 IDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVR 155
>gi|414879222|tpg|DAA56353.1| TPA: hypothetical protein ZEAMMB73_432076 [Zea mays]
Length = 471
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 65 LWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+WR KK +GKE L V+ LKR +L++F+++HV RLL+ D++AVL EL RQ
Sbjct: 361 IWRRKKEMGKEGLMVVAQLKRLAALPPAGGHPRLEQFMRSHVSRLLRTDLLAVLAELLRQ 420
Query: 120 EETILAVKIFDI 131
+ L++K+ +
Sbjct: 421 DHVSLSMKVCSL 432
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 65 LWRGKKLIGKEALFVILGLKRFK-----DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ 119
+W KK +GKE L + LKR +L++F+++HV +LL+ D++A EL RQ
Sbjct: 46 IWWRKKEMGKEGLMAVALLKRLAALPPVGCHPRLEQFMRSHVSQLLRTDLLA---ELLRQ 102
Query: 120 EETILAVK 127
+ L++K
Sbjct: 103 DHASLSMK 110
>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
Length = 439
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D + Y L+ L + G+ +E +V+E M +E P TYT ++ K GS DA
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQ 338
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ M+ PP+ + +LL+GL + +R+ + FE++ E+ PP +
Sbjct: 339 VIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEF-FEKILRERC---PPCAV 388
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 2/158 (1%)
Query: 92 KLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
+L K +K LR ++ L +Q T ++F+ + ++ P Y L+ A
Sbjct: 268 ELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGC-NPSVVTYTTLVHA 326
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ G + +A QV SM + + PD TYT ++ G ++G A +E +++ PP
Sbjct: 327 HCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPC 386
Query: 212 ELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249
+ + L++G L+ VK + E+ + A DP
Sbjct: 387 AVVYSALVRGCCKAALVDEAVKY-YVEMLDRRLAPDPA 423
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 125 AVKIFDIIRKQDWY-QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+++F ++ +D + +P+ + LI L + ++ A ++ + M+ DL D+ TYT +
Sbjct: 229 ALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTL 288
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ G K G ++ ++E+M++ P + + L+
Sbjct: 289 MDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLV 324
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 5/99 (5%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ D++ K+ +PD + +I + G++ EA ++ E++ P++ TYT +I GF
Sbjct: 162 LLDMVEKKSA-KPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGF 220
Query: 188 LKDGSPADAMNIYEDMIKSPD---PPEELPFRILLKGLL 223
K G+ ++A+ +++ ++ S D P + F L+ GL
Sbjct: 221 CKSGNLSEALQLFK-VLSSRDHHAEPNVVTFNALISGLC 258
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+E R + + A +IFD + Q PD + LI L++ G +++A++ + M+
Sbjct: 365 LLVECCRNDNMMDAERIFDEMPSQGVV-PDLVSFSALIGLLSKNGCLDQALKYFRDMKNA 423
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
L PD+ YT +I GF ++G ++A+ + ++M++ + + + +L GL +L
Sbjct: 424 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML--- 480
Query: 232 VKKDFEELFPE 242
+ +ELF E
Sbjct: 481 --SEADELFTE 489
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN- 198
PD Y + LI ++ G MN+A+ ++E M + +L PD TY +I GF K GS + +N
Sbjct: 497 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK-GSEMEKVNE 555
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ DMI P + + IL+ G
Sbjct: 556 LWNDMISRRIYPNHISYGILING 578
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A R G + EA ++ +SM + L P TY +I G K G A +
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++M+K P+ + ILL R+ D E +F E
Sbjct: 347 LDEMLKIGMSPDTATYNILLV-----ECCRNDNMMDAERIFDE 384
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D + +Q D Y ++ L + ++EA +++ M + +FPD T+T +I
Sbjct: 448 ALKVRDEMLEQGCV-LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 506
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ KDG+ A+ ++E MI+ P+ + + L+ G
Sbjct: 507 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 545
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+++ +++ +PD Y LI + +M + ++W M ++P+ +Y +I
Sbjct: 518 AVTLFEMMIQRNL-KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 576
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G ++A ++++M++ + ++KG
Sbjct: 577 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 613
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L++ R M +A ++++ M + + PD +++ +I K+G A+
Sbjct: 356 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 415
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ DM + P+ + + IL+ G + ++ +K
Sbjct: 416 YFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALK 450
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + Y +I L +TGK A V + M K + PD+ TY ++ ++ + DA
Sbjct: 321 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 380
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
I+++M P+ + F L+ GLL + K F ++ K+A P+ +
Sbjct: 381 IFDEMPSQGVVPDLVSFSALI-GLLSKNGCLDQALKYFRDM---KNAGLAPDNV 430
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +R G+M EA + M + + PD TYT +I G + + +A +
Sbjct: 672 PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 731
Query: 200 YEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 732 HDEMLQRGFVPDD 744
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + M+ A + M L PD TY ++ GF + G +A I
Sbjct: 637 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 696
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
MI+ P+ + L+ G + L+
Sbjct: 697 MLKMIERGVNPDRSTYTSLINGHVTQNNLK 726
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 21/225 (9%)
Query: 12 PILASIVLQNLTKNPSKNFSFLAFK---PKSPIVDFVAHEPILGLRQYHDGRPRGSLWR- 67
P+L +++ K +K F F+ K P + + + H ++ R G G + R
Sbjct: 248 PVLRAMLRAGDVKGAAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRA---GAAMGVMRRM 304
Query: 68 -------GKKLIGKEALFVILGLKRFK--DDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
G G V+ GL R D K+ + ++ + L + V+ +
Sbjct: 305 EREGVVPGVMTYGA----VVDGLVRCGRVKDAWKVAEEMERNGLAWNEFVYSTVITGFCK 360
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
E A+K+++ + +P+ +Y +I LA GKM EA ++ M P+
Sbjct: 361 SGEIDCALKVWEAMVASP-VRPNVVLYSAMIGGLANFGKMTEAELLFREMIHSKCAPNII 419
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I+G+ K G + A++++E+MI + P + + IL+ GL
Sbjct: 420 TYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLC 464
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y LI L G++ +AM VW+ M PD+ YT +I+G G + +
Sbjct: 451 PNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRL 510
Query: 200 YEDMIKSPDP-PEELPFRILLKGLL 223
+ DM+ S P+ + + +LL GLL
Sbjct: 511 FYDMLASGHADPDVISYNVLLDGLL 535
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I + G + A+ VWE M P++ +Y+ +I G G DAM
Sbjct: 415 APNIITYGSIIQGYFKIGDTSRALSVWEEMIGAGCVPNAVSYSILINGLCNVGRLKDAMM 474
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+++ M+ P+ + + ++KGL ++ ++ F ++ HA DP
Sbjct: 475 VWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRL-FYDMLASGHA-DP 522
>gi|242065966|ref|XP_002454272.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
gi|241934103|gb|EES07248.1| hypothetical protein SORBIDRAFT_04g027800 [Sorghum bicolor]
Length = 519
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 59 GRPRGSLWRGKKLI---GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE 115
G+ RG+ G++ + + A V L+R +E+L + HV + + E
Sbjct: 37 GKRRGAGAAGEEGVDEAAEAAELVRSVLRRTAGGKERLVPVLDRHVRGVRTEHCFLLFEE 96
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R++ + +++F ++KQ WY D IY LI + R G++ AM ++ MR P
Sbjct: 97 LGRRDAWLQCLEVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKP 156
Query: 176 DSQTYTEVIRGFL----KDGSPADAMNIYEDM-IKSPDPPEELPFRILLKGLLPHPLLRS 230
D+ Y +I L K + A A+ +E M + P + + ILL+ +
Sbjct: 157 DTSVYNSLIGAHLHSRDKSKALAKALGYFEKMKCIARCQPTIVTYNILLRAFAQAGDTKQ 216
Query: 231 K--VKKDFEE--LFPEKHAYDPPEEIFGK 255
+ KD +E + P+ + Y+ + +GK
Sbjct: 217 VDILFKDLDESVVSPDIYTYNGVLDAYGK 245
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+I+ ++ P A+ Y LI ++ +M+EA + M + L PD+ TY+ ++
Sbjct: 357 AKKVFEIMIRKGC-APGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 415
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+G + G P +A+N++++M P + + ILL G H L +K
Sbjct: 416 QGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y ++ G++NEA ++++ M D+ P++ T+T ++ G K+G ++A +
Sbjct: 266 PNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLV 325
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAYD 247
+E M + P+ + L+ G L+ ++ KK FE + P H+Y+
Sbjct: 326 FETMTEKGVEPDISTYNALMDGYCLQRLM-NEAKKVFEIMIRKGCAPGAHSYN 377
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 65/130 (50%), Gaps = 2/130 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
V+ L + T +AV +F + +Q+ +P+ Y +I +L + +N+AM+ M
Sbjct: 202 TTVINGLCKTGNTSMAVDVFKKM-EQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMV 260
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ + P+ TY ++ GF G +A ++++M+ P + F IL+ GL ++
Sbjct: 261 ERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMV- 319
Query: 230 SKVKKDFEEL 239
S+ + FE +
Sbjct: 320 SEARLVFETM 329
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA + LI L GK+ EA++++ M K P+ +YT VI G K G+ + A++
Sbjct: 160 HPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVD 219
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+++ M ++ P + + ++ L L+
Sbjct: 220 VFKKMEQNGCKPNVVTYSTIIDSLCKDRLVN 250
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + K+ ++P+ Y +I L +TG + A+ V++ M + P+ TY+ +I
Sbjct: 182 AVELFNEMVKR-GHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTII 240
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD DAM +M++ PP + ++ G
Sbjct: 241 DSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFC 279
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + +D P+ + L+ L + G ++EA V+E+M ++ + PD TY ++
Sbjct: 287 ATRLFKEMVGRDV-MPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALM 345
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ +A ++E MI+ P + IL+ G
Sbjct: 346 DGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILING 382
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 9/112 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ MNEA +V+E M ++ P + +Y +I G+ K +A +
Sbjct: 335 EPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKS 394
Query: 199 IYEDMIKSPDPPEELPFRILLKGL--LPHPLLRSKVKKDFEELFPEKHAYDP 248
+ +M P+ + + L++GL L P K+ LF E +Y P
Sbjct: 395 LLAEMYHKALNPDTVTYSTLMQGLCQLGRP-------KEALNLFKEMCSYGP 439
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 128 IFDIIRKQDWYQPDAYIY--KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ + + D ++ +Y LI L R ++ ++ V M K + PD+ T+ +I
Sbjct: 112 VVSLCNQMDLFRVTHNVYSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALIN 171
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +G +A+ ++ +M+K P + + ++ GL
Sbjct: 172 GLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P+ Y LI + GK+ A +++ + + PD +TYT +I+G LK+G
Sbjct: 470 KEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLS 529
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A +++ M P + ++++G L +
Sbjct: 530 DEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQN 561
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD Y +I L + G +EA ++ M + P+S +Y +I+GFL++ +
Sbjct: 507 DGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSST 566
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
A+ + ++M+ F++LL
Sbjct: 567 AIRLIDEMVGKRFSVNLSTFQMLL 590
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ L + G+ EA+ +++ M P+ TY ++ GF K G +A+
Sbjct: 405 NPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M + P + + IL++G+
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMF 489
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y L+ + G ++EA+++ +SM+++ L P+ YT +I G G A
Sbjct: 440 HPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKE 499
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
++ + P+ + +++KGLL L
Sbjct: 500 LFSKLFGDGTRPDIRTYTVMIKGLLKEGL 528
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+E R + + A +IFD + Q PD + LI L++ G +++A++ + M+
Sbjct: 208 LLVECCRNDNMMDAERIFDEMPSQG-VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA 266
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
L PD+ YT +I GF ++G ++A+ + ++M++ + + + +L GL +L
Sbjct: 267 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML--- 323
Query: 232 VKKDFEELFPE 242
+ +ELF E
Sbjct: 324 --SEADELFTE 332
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN- 198
PD Y + LI ++ G MN+A+ ++E M + +L PD TY +I GF K GS + +N
Sbjct: 340 PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK-GSEMEKVNE 398
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ DMI P + + IL+ G
Sbjct: 399 LWNDMISRRIYPNHISYGILING 421
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A R G + EA ++ +SM + L P TY +I G K G A +
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++M+K P+ + ILL R+ D E +F E
Sbjct: 190 LDEMLKIGMSPDTATYNILLV-----ECCRNDNMMDAERIFDE 227
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D + +Q D Y ++ L + ++EA +++ M + +FPD T+T +I
Sbjct: 291 ALKVRDEMLEQGCV-LDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLI 349
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ KDG+ A+ ++E MI+ P+ + + L+ G
Sbjct: 350 NGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFC 388
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+++ +++ +PD Y LI + +M + ++W M ++P+ +Y +I
Sbjct: 361 AVTLFEMMIQRNL-KPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 419
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G ++A ++++M++ + ++KG
Sbjct: 420 NGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKG 456
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L++ R M +A ++++ M + + PD +++ +I K+G A+
Sbjct: 199 SPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALK 258
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ DM + P+ + + IL+ G + ++ +K
Sbjct: 259 YFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALK 293
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + Y +I L +TGK A V + M K + PD+ TY ++ ++ + DA
Sbjct: 164 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 223
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
I+++M P+ + F L+ GLL + K F ++ K+A P+ +
Sbjct: 224 IFDEMPSQGVVPDLVSFSALI-GLLSKNGCLDQALKYFRDM---KNAGLAPDNV 273
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +R G+M EA + M + + PD TYT +I G + + +A +
Sbjct: 515 PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 574
Query: 200 YEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 575 HDEMLQRGFVPDD 587
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 37/90 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + M+ A + M L PD TY ++ GF + G +A I
Sbjct: 480 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 539
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
MI+ P+ + L+ G + L+
Sbjct: 540 MLKMIERGVNPDRSTYTSLINGHVTQNNLK 569
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K F + R + + +P+ +Y LI ++ ++G +N A +++ + L PD Q YT +I
Sbjct: 459 KAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTII 518
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K+G +A+ + M + PP E + ++++G L H
Sbjct: 519 NGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQH 559
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E + A K+FD++ + +PD + Y LI +++EA Q++ M + L P++
Sbjct: 349 QMEVVEARKLFDVMITRGC-KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTV 407
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+YT +I F + G +A +++DM + P+ + +LL+G L
Sbjct: 408 SYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYL 457
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI A + GK+ EA ++++ M PD TY+ ++ GF K G A +
Sbjct: 404 PNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRL 463
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+ M + P + + IL+ + L + +K F ELF H P +I+
Sbjct: 464 FRAMQGTYLKPNLVMYTILIDSMCKSGNL-NHARKLFSELFV--HGLQPDVQIY 514
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + LI L + G+ +A+++++ M PD TYT +I G K G A A
Sbjct: 158 QPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAG 217
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ + M + P+ + + L+ L L+
Sbjct: 218 LIKKMGEVGCQPDVVTYSTLIDSLCKDRLVN 248
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + E A+++FD + + QPD Y Y +I L + G+ A + + M + P
Sbjct: 171 LCKAGEFAQALELFDDMVARGC-QPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQP 229
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
D TY+ +I KD +A++I+ M P + + L++GL
Sbjct: 230 DVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCS 278
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD IY +I L + G ++EA++ + M ++ P+ +Y +IRGFL+ + A+
Sbjct: 508 QPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQ 567
Query: 199 IYEDM 203
+ +M
Sbjct: 568 LIGEM 572
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI +L + +NEA+ ++ M+ + + P +YT +I+G +A
Sbjct: 228 QPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASA 287
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ +M P+ + F +L+
Sbjct: 288 MLNEMTSLNIMPDIVTFSLLI 308
>gi|356527376|ref|XP_003532287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Glycine max]
Length = 515
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++ +Q WY+PD +Y LI+ L + + +A +++++M E D ++YT ++
Sbjct: 140 ALKVFELLHEQIWYKPDTGVYIKLIVMLGKCKQPEKAHELFQAMVDEGCVLDCESYTALL 199
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + G A ++ E+M +P P+ + ILLK L
Sbjct: 200 SAYSRSGLLDKAFSLLEEMKNTPGCQPDVQTYSILLKSCL 239
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 10/138 (7%)
Query: 116 LERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L R+ + AV +F D++ K + PD++ Y L+ +L R K+ EA ++ M+ +
Sbjct: 227 LCRKSQVNGAVDLFEDMLNK--GFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCN 284
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK- 233
PD Y VI GF ++G DA + +DM + P + +R L+ GL +L K
Sbjct: 285 PDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKY 344
Query: 234 ------KDFEELFPEKHA 245
K F F HA
Sbjct: 345 VEEMLSKGFSPHFAVIHA 362
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A G ++ A ++ M K D+ PD Q+Y +++ + A+++
Sbjct: 180 PDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNGAVDL 239
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+EDM+ P+ + LL L LR K
Sbjct: 240 FEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYK 273
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I+ R G+ ++A +V + M+ P+ +Y ++ G G +A
Sbjct: 284 NPDIVHYNTVILGFCREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATK 343
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
E+M+ P L+KG
Sbjct: 344 YVEEMLSKGFSPHFAVIHALVKGFC 368
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L I ++ + A +++ K +FPD+++Y ++R F +G + A ++ M K
Sbjct: 153 LDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRD 212
Query: 208 DPPEELPFRILLKGLL 223
P+ +RIL++ L
Sbjct: 213 VVPDIQSYRILMQALC 228
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ Y L+ L R G+ EA V +M + + PD TYT +I G KDG AM+
Sbjct: 135 SANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMD 194
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ M++ + P + + +LL GL L+
Sbjct: 195 LLNLMVEKGEEPSNVTYNVLLSGLCKEGLV 224
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + G+ AM + M ++ P + TY ++ G K+G DA
Sbjct: 170 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 229
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I MI+ + + + L+KGL + +K F +F ++ +P F L
Sbjct: 230 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL-FNSMFDNENCLEPNVFTFNML 286
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + K+ EA+ + M FP+S T T ++ G KDG +AM
Sbjct: 30 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 89
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ E M K + + + L+ G + L + K+ F+E+
Sbjct: 90 LLEAMKKKGFDADVVLYGTLISGFCNNGNL-DRGKELFDEML 130
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 124 LAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQT 179
L + F I+R + + D Y L+ L GK++EA++++ SM + L P+ T
Sbjct: 223 LVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFT 282
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ +I G K+G A+ I+ M+K + + +LL G L
Sbjct: 283 FNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCL 326
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+K+F+ + ++ +P+ + + LI L + G++ +A+++ M K+ + TY +
Sbjct: 262 ALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNML 321
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ G LK G +AM +++ ++ P + IL+ G +L + K F E+
Sbjct: 322 LGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRML-NIAKGLFCEM--RT 378
Query: 244 HAYDPP 249
H +P
Sbjct: 379 HGLNPA 384
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ L+ L + G+M+EAM++ E+M+K+ D Y +I GF +G+ +
Sbjct: 66 PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 125
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M+ + + L+ GL
Sbjct: 126 FDEMLGKGISANVVTYSCLVHGLC 149
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA + LI L++ G+++EA E M PD+ Y +++G G + +N
Sbjct: 452 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 511
Query: 199 IYEDM 203
+ M
Sbjct: 512 LLHQM 516
>gi|224069806|ref|XP_002303044.1| predicted protein [Populus trichocarpa]
gi|222844770|gb|EEE82317.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 3/157 (1%)
Query: 68 GKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVK 127
+K+ ++A+ VIL + K EK K T+ +LL ++ L E A++
Sbjct: 68 NRKIASQKAISVILRREATKAVIEK--KRGPTNSKKLLPQTVLEALHERITALRWASALE 125
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F+++R+Q WY+P A +Y LI+ L + + ++A Q++++M E ++YT ++ +
Sbjct: 126 VFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTALLSAY 185
Query: 188 LKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ G A +I E+M +PD P+ + IL+K L
Sbjct: 186 GRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCL 222
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PDA Y LI L +G+ ++A ++ M K +++PD T+ +I +K+G ++
Sbjct: 215 DGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISE 274
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A +YE+MI+ P+ + + +L+ GL + L
Sbjct: 275 AEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRL 307
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI ++ K+ M+++ M + + ++ TYT +I+G+ + G A I
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEI 383
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
++ M+ PP + + +LL GL +
Sbjct: 384 FKWMVFCGVPPNIITYNVLLHGLCDN 409
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P+ IY +I L ++ +++ A+ + M + + PD+ TY +I G G DA
Sbjct: 182 YEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDAT 241
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M K P+ F L+ + + S+ ++ +EE+ + + DP
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRI-SEAEELYEEMI--RRSLDP 289
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + K++ Y PD + + LI A + G+++EA +++E M + L PD TY+ +I
Sbjct: 240 ATRMVSCMTKREIY-PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLI 298
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G +A ++ M+ P+ + + IL+ G
Sbjct: 299 YGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILING 335
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L GK+ +A+ + M+K + D TY +IRG K G ADA ++
Sbjct: 394 PNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDL 453
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
Y + P+ + ++ GL L
Sbjct: 454 YCSLNLKGLTPDIWTYTAMMLGLYKKGL 481
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +++EA Q++ M + FPD TY+ +I G+ K M +
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + +L++G
Sbjct: 349 FCEMSQRGVVRNTVTYTVLIQG 370
>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 TDEMSMKGLKPDKITYTTLIDG 320
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLC 357
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMI 204
+ +M+
Sbjct: 368 MLREML 373
>gi|357493977|ref|XP_003617277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518612|gb|AET00236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 502
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
VL+E R+E+ A ++F+ + Q PD + +I +R G++ A+ +E M+
Sbjct: 182 VLVESFRKEDVWEAERVFNEML-QCGVVPDLISFSSIIGVFSRNGELGRALAYFEKMKGV 240
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
L PD+ YT +I G+ ++ + A+ + +M++ + + + LL G L R K
Sbjct: 241 GLVPDTVIYTILINGYCRNNDVSGALKVRNEMVERSCVMDVVTYNTLLNG-----LCRGK 295
Query: 232 VKKDFEELFPE 242
+ D +ELF E
Sbjct: 296 MLDDADELFKE 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 16/112 (14%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y L+ L R +++A ++++ M + +FPD T T +I G+ KDG+ A++++
Sbjct: 280 DVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLF 339
Query: 201 E----------------DMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
E DMI P + F IL+ G L+ + K +
Sbjct: 340 ETITLRSEMEKAKELWRDMISREIFPHYISFSILINGFCSLGLVSESLIKGY 391
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 39/73 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +R G+M EA V M + + PD TYT VI G++ + +A +
Sbjct: 428 PDLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSVINGYVSKDNMKEAFRV 487
Query: 200 YEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 488 HDEMLQRGFVPDD 500
>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L R G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQS-LSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 318 IDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLC 357
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G + G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +F+ I K W +P + L+ R G ++E ++ +M + PD TY+
Sbjct: 154 VAQSVFNAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSV 211
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 212 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 250
>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 418
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 TDEMSMKGLKPDKITYTTLIDG 320
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 60.8 bits (146), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K PD Y Y L+ LARTG ++EA+ M++ PD +Y ++
Sbjct: 1485 AINMFDEMNKLGC-APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 1543
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K G P AM + +M +S P+ + + +L G L H + + K +E+
Sbjct: 1544 NGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVL-GALSHAGMFEEASKLMKEMNTLGF 1602
Query: 245 AYD 247
YD
Sbjct: 1603 EYD 1605
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R Q + +PD + Y +LI L + G+++EA + M++E PD+ +I
Sbjct: 1274 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMI 1332
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G DAM ++++M P + + ++K L S+V FE +
Sbjct: 1333 NFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 1387
Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G+ + A+Q+ M++ + P ++ YT +I F K A+++
Sbjct: 1218 PDTVTYSALISAFCKLGRRDSAIQLLNEMKEIGMQPTTKIYTMLIALFFKFNDAHGALSL 1277
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P+ + L++GL
Sbjct: 1278 FEEMRHQYCRPDVFTYTELIRGL 1300
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP IY LI + + A+ ++E MR + PD TYTE+IRG K G +A +
Sbjct: 1252 QPTTKIYTMLIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYH 1311
Query: 199 IYEDMIKSPDPPE 211
+ +M + P+
Sbjct: 1312 FFCEMQREGCRPD 1324
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM- 197
+PD ++I L + G++++AM++++ M P TY +I+ + S A +
Sbjct: 1322 RPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIPSVVTYNTIIKALFESKSRASEVP 1381
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ +E M +S P + IL+ G
Sbjct: 1382 SWFERMKESGISPSSFTYSILIDGF 1406
>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQP + LI L GK+ EA+Q+++ M E PD TY +I G KD +A+
Sbjct: 76 YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEAL 135
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++ DM+ P + L+ GL
Sbjct: 136 SLFSDMLAKGISPNNFTYSSLIHGLC 161
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + + +QPD Y LI L + ++ EA+ ++ M + + P++ TY+ +I
Sbjct: 99 ALQLFDKMTGEG-FQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLI 157
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE---- 238
G G +A+ ++ MI P++L F L+ L +++ K FEE
Sbjct: 158 HGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQ 217
Query: 239 -LFPEKHAYDP 248
L P+ Y+
Sbjct: 218 GLIPDTVTYNT 228
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 140 PDAYIYKDLIIALARTGK---MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + L+ AL + G M++AM ++E M ++ L PD+ TY +I G G DA
Sbjct: 183 PDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDA 242
Query: 197 MNIYEDMIKSPDPPEELPFRIL 218
+ ++ +M+ P+ + +RIL
Sbjct: 243 IALFHEMVVYGQIPDLVTYRIL 264
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +IY ++ + R G++ A ++ + + L PD +TYT +I G + G A+A +
Sbjct: 291 PDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKL 350
Query: 200 YEDM 203
+ +M
Sbjct: 351 FGEM 354
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L L + ++ EAM + + + +L PD Y+ V+ G + G A ++
Sbjct: 256 PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDL 315
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + P+ + I++ GL LL ++ K F E+
Sbjct: 316 FSKLSSKGLHPDVRTYTIMINGLCQQGLL-AEASKLFGEM 354
>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Brachypodium distachyon]
Length = 676
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 92 KLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
K+ + L+L K+ ++ E +Q A+ +F+ + ++ PD + Y LI
Sbjct: 417 KVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRM-AENGCHPDIHTYTTLIAR 475
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ +M E+ ++++ +L P QTYT +I G+ K G A+ ++E M+++ +
Sbjct: 476 YCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQAD 535
Query: 212 ELPFRILLKGLL 223
+ + L+ GL
Sbjct: 536 SITYGALISGLC 547
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + + PDA ++ LI+ R G+M E + M+ + D+ T T ++
Sbjct: 168 ARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNATCTVIV 227
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
R F + G D ++ M++ PP + + + GL R+ VK+ F
Sbjct: 228 RVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCK----RAYVKQAF 275
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + K Y+P+ + Y +I + GK+ A + M ++ L P++ TYT +I
Sbjct: 309 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 368
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+GS A + M + P + L+ GL
Sbjct: 369 SGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLC 407
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 129 FDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
F+++ K ++ +QP+ Y Y LI L + GK+ EA +V + L D TYT +I
Sbjct: 381 FELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITE 440
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
K G A++++ M ++ P+ + L+
Sbjct: 441 HCKQGHITYALDLFNRMAENGCHPDIHTYTTLI 473
>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 418
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|242054629|ref|XP_002456460.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
gi|241928435|gb|EES01580.1| hypothetical protein SORBIDRAFT_03g036710 [Sorghum bicolor]
Length = 439
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+++++++++ +PD Y + L G++ +A+ + E M+KE PDS +Y E+I
Sbjct: 232 AEKVWEMMKERNI-EPDEKSYNAKLRGLVSQGRVEDAVALIERMQKEGPKPDSVSYNELI 290
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
RG+ K+G +A +Y+D+IK+ E P R L+PH
Sbjct: 291 RGYCKEGRLNEAKKVYDDLIKN----ECAPNRGTFHTLVPH 327
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L ++ E A+ + ++ K+ PD + L+ ++A +VWE M++ ++ P
Sbjct: 188 LCQKPELSAALDVIALMEKR-GVSPDIISFNILLNGFYNNDSFDDAEKVWEMMKERNIEP 246
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D ++Y +RG + G DA+ + E M K P+ + + L++G L ++ KK
Sbjct: 247 DEKSYNAKLRGLVSQGRVEDAVALIERMQKEGPKPDSVSYNELIRGYCKEGRL-NEAKKV 305
Query: 236 FEELFPEKHA 245
+++L + A
Sbjct: 306 YDDLIKNECA 315
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y Y LI AL + +++ A+ V M K + PD ++ ++ GF + S DA +
Sbjct: 176 PTVYSYNILISALCQKPELSAALDVIALMEKRGVSPDIISFNILLNGFYNNDSFDDAEKV 235
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E M + P+E + L+GL+
Sbjct: 236 WEMMKERNIEPDEKSYNAKLRGLV 259
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 88 DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
DD EK+ + +K + + A L L Q AV + + ++K+ +PD+ Y +
Sbjct: 230 DDAEKVWEMMKERNIEPDEKSYNAKLRGLVSQGRVEDAVALIERMQKE-GPKPDSVSYNE 288
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
LI + G++NEA +V++ + K + P+ T+ ++ ++ G
Sbjct: 289 LIRGYCKEGRLNEAKKVYDDLIKNECAPNRGTFHTLVPHLVEAG 332
>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 418
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLC 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
macropoda]
Length = 412
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAY 246
IY+ M+ P+ + + L+ GL L+ + +EL P+K Y
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITY 301
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M ++L PD TYT +
Sbjct: 246 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTL 304
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +E+ + L+ GL
Sbjct: 305 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLC 344
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
++M P+++ + L+ G L S
Sbjct: 286 IDEMSMKELKPDKITYTTLIDGCCKEGDLDS 316
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 141 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 198
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 199 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 237
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PDS+TYT +I F K G
Sbjct: 326 QENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVW 385
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 386 KGSKLLKEMQRDGHVPSVVTYNVLMNG 412
>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y + LI ALA+ GK++EAM ++E M+ +++FP+ TYT +I G K+ A+
Sbjct: 268 NPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 327
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M + P + ILL L
Sbjct: 328 LCKKMKEQGIQPNVYSYTILLDALC 352
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QP+ Y Y L+ AL + G++ A Q ++ + + + +TY +I G K G
Sbjct: 333 KEQGIQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLF 392
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D M++ M P + F+ ++ LL
Sbjct: 393 GDVMDLKSKMEGKGCMPNAITFKTIICALL 422
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + Y LI G + EA + M+ +++ PD T+ +I K+G +AM+
Sbjct: 233 SPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMS 292
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL-PHPLLRS 230
++E+M P + + L+ GL H L R+
Sbjct: 293 LFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERA 325
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 131 IIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
++RK + + +PD +Y +I L + + +A ++ M + + P+ TYT +I GF
Sbjct: 188 LLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFC 247
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ +A ++ +M P+ F IL+ L
Sbjct: 248 IMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 281
>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 418
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Vitis vinifera]
Length = 728
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ Y L+ L R G+ EA V +M + + PD TYT +I G KDG AM+
Sbjct: 281 SANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMD 340
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ M++ + P + + +LL GL L+
Sbjct: 341 LLNLMVEKGEEPSNVTYNVLLSGLCKEGLV 370
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + G+ AM + M ++ P + TY ++ G K+G DA
Sbjct: 316 HPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFK 375
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I MI+ + + + L+KGL + +K F +F ++ +P F L
Sbjct: 376 ILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKL-FNSMFDNENCLEPNVFTFNML 432
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+K+F+ + ++ +P+ + + LI L + G++ +A+++ M K+ + TY +
Sbjct: 408 ALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNML 467
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ G LK G +AM +++ ++ P + IL+ G +L + K F E+
Sbjct: 468 LGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRML-NIAKGLFCEM--RT 524
Query: 244 HAYDPP 249
H +P
Sbjct: 525 HGLNPA 530
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + K+ EA+ + M FP+S T T ++ G KDG +AM
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 235
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ E M K + + + L+ G + L + K+ F+E+
Sbjct: 236 LLEAMKKKGFDADVVLYGTLISGFCNNGNL-DRGKELFDEML 276
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 124 LAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQT 179
L + F I+R + + D Y L+ L GK++EA++++ SM + L P+ T
Sbjct: 369 LVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFT 428
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ +I G K+G A+ I+ M+K + + +LL G L
Sbjct: 429 FNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCL 472
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ L+ L + G+M+EAM++ E+M+K+ D Y +I GF +G+ +
Sbjct: 212 PNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKEL 271
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M+ + + L+ GL
Sbjct: 272 FDEMLGKGISANVVTYSCLVHGLC 295
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA + LI L++ G+++EA E M PD+ Y +++G G + +N
Sbjct: 598 RPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIIN 657
Query: 199 IYEDM 203
+ M
Sbjct: 658 LLHQM 662
>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 418
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM +A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDG 250
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 TDEMSMKGLKPDKITYTTLIDG 320
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
duartei]
Length = 412
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 250 IYKQMLSQSLSPDLITYNTLIYGLC 274
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 246 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 304
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
I G K+G A + MI+ +E+ + L+ G
Sbjct: 305 INGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISG 342
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
++M P+++ + L+ G L S
Sbjct: 286 IDEMSVKGLKPDKITYTTLINGCCKEGDLDS 316
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E + M + PD TY+
Sbjct: 141 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSV 198
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 199 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 237
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI + G+ +A ++ M L PD++TYT +I F K G
Sbjct: 326 QENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVW 385
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 386 XGSKLLKEMQRDGHVPSVVTYNVLMNG 412
>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
microcephala]
Length = 431
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLC 293
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +E+ + L+ GL
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLC 363
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
LA +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 LAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 256
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 305 IDEMSVKGLKPDKITYTTLIDGCC 328
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD++TYT +I F K G +
Sbjct: 351 DEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 418
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDG 250
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + GK+NEA+++ + MR L PD T +I G K G A+N+
Sbjct: 404 PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINV 463
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ DM ++ P+ + + L+ G
Sbjct: 464 FMDMHQTGLSPDIITYNTLING 485
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ ++R + PD + +I L + G+M A+ V+ M + L PD TY +I
Sbjct: 425 ALKLEKVMRHRGLL-PDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLI 483
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G+ K +A N+ M S P+ + I + G
Sbjct: 484 NGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCS 523
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ ++ + A K+FD +++ + P+A +Y L+ + ++++A ++E MRK
Sbjct: 131 TVINAFCKEGNVVEARKLFDGLKEMG-FSPNAIMYNTLMNGYVKMREIDQANMLYEEMRK 189
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + PD T+ ++ G K G D + +D+ P+ F I + GL
Sbjct: 190 KGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLC 242
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%)
Query: 122 TILAVKIF---DIIRKQD-WYQ-------PDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
T+L K F D++ Q W + PD + I L++ G + EA V+ M +
Sbjct: 340 TVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLR 399
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ L P++ Y +I GF K G +A+ + + M P+ +++ GL +RS
Sbjct: 400 KGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRS 459
Query: 231 KVK 233
+
Sbjct: 460 AIN 462
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++R+Q WY+P A +Y LI+ L + + +A ++++ M +E ++YT ++
Sbjct: 83 ALKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALL 142
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + G +A +I +M SPD P+ + IL+K L
Sbjct: 143 SAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCL 182
>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y++ LI A A GK+++AM V+ MR++ L P++ TY VI K G DAM
Sbjct: 368 HPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAML 427
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ GL
Sbjct: 428 YFEQMIDEGLSPGNIVYNSLIHGL 451
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + +L+ L
Sbjct: 289 LKKMRSDGVEPDVVTYSLLMDYL 311
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+F+++ + +P+ Y LI GKM+EAM++ M L P++
Sbjct: 488 KEGRVIESEKLFELMVRIG-VKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNT 546
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G+ K DA+ ++++M S P+ + + I+L+GL
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLF 592
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+
Sbjct: 293 RSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 353 VEMHGLLDLMVRNGIHPDHYVFSILI 378
Score = 43.5 bits (101), Expect = 0.091, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY+ ++ K+G +A I
Sbjct: 264 PDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKI 323
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 324 FDSMTKRGLKPEITTYGTLLQG 345
Score = 40.4 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + +M +A+ +++ M + PD TY +++G + A A
Sbjct: 543 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 602
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+Y + +S E + I+L H L ++K+ D ++F
Sbjct: 603 LYVRITESGTQIELSTYNIIL-----HGLCKNKLTDDALQMF 639
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
P+ + Y L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAAL 241
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G ++A + M + PD TY +I K + AM +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEV 253
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + +L G
Sbjct: 254 LNTMVKNGVMPDCMTYNSILHG 275
>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
[Coelocarpum swinglei]
Length = 429
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 266
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ M+ P+ + + L+ GL
Sbjct: 267 VYKQMLSQSLSPDLITYNTLIYGLC 291
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A+ +FD I K W +P + L+ R G ++E ++ +M + PD TY+
Sbjct: 158 VALSVFDAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 215
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 216 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 254
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++++ + Q PD Y LI L + G + +A + + MR + L PD +YT +
Sbjct: 263 LAMEVYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTL 321
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 322 IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLC 361
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM+V++ M + L PD TY +I G K G A ++
Sbjct: 243 PNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 302
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 303 IDEMRMKGLKPDKISYTTLIDGCC 326
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD+ TYT +I F K G +
Sbjct: 349 DDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLL 408
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 409 KEMQRDGHVPSVVTYNVLMNG 429
>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Brachypodium distachyon]
Length = 810
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 103 RLLKMDIVA--VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
R L+ DIVA LI QE + +I +D P+ +Y LI M E
Sbjct: 605 RGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKE 664
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ +ESM K + D+ TYT +I GF KDG+ A A+ +Y +M+ P+ F L
Sbjct: 665 VSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTH 724
Query: 221 GL 222
GL
Sbjct: 725 GL 726
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 47/82 (57%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PDA+ + L L R+G ++ A ++ E MR+ D+ P+ Y +I G+L+D +A
Sbjct: 712 YIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAF 771
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
++++M+ P++ + IL+
Sbjct: 772 RLHDEMLNMGIQPDDTTYDILV 793
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 8/101 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +LI + K+ EA+ +++ M+K + P TY ++ G+ K G +A+ +
Sbjct: 399 PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKL 458
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
Y +M P + + L++G + KKDF+ +
Sbjct: 459 YSEMPMEGFKPNVVTYITLMRGYI--------AKKDFDNAY 491
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 45/79 (56%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ Y+ ++ L +TG+M EA++V + MR D T ++RG+ +A+N++++
Sbjct: 263 FTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKE 322
Query: 203 MIKSPDPPEELPFRILLKG 221
+K P ++ + +L++G
Sbjct: 323 TLKDGIVPTKVMYGVLIRG 341
Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y +I + G M A V++ MR++ L P+ TYT I G+ + G A+
Sbjct: 537 FIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMAL 596
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ D+ + P+ + + L+ G
Sbjct: 597 KMLNDVRRRGLQPDIVAYNALINGF 621
Score = 43.5 bits (101), Expect = 0.095, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD ++K +P Y L++ + G M+EA++++ M E P+ TY ++
Sbjct: 420 ALNLFDRMKKAG-VKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLM 478
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
RG++ +A + ++M ++ + + +L+ G+
Sbjct: 479 RGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGI 516
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ+ + Y Y LI + ++ E + +S E P TY +I GF+K G
Sbjct: 498 KQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMM 557
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
A +Y+ M + PP + + + G
Sbjct: 558 GSAFTVYQQMREKGLPPNIITYTSFIDG 585
Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y I RTG + A+++ +R+ L PD Y +I GF ++G+ + A+ +
Sbjct: 574 PNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQL 633
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++K P + + L+ G
Sbjct: 634 LVILLKDGLAPNTVVYNSLITG 655
Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI ++ G + A++++ M + PD+ T+T + G + G A +
Sbjct: 680 DTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLL 739
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E+M + P + +L+ G L
Sbjct: 740 EEMRRLDVRPNVFIYNMLINGYL 762
>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 418
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +E+ + L GL
Sbjct: 318 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLC 357
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 154 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 211
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 212 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 250
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 298
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 299 IDEMSVKGLKPDKITYTTLIDGCC 322
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y++ LI A A+ GK+++AM V+ MR++ L PD+ TY VI K G DAM
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ L
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSL 454
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EA ++ SM + PD
Sbjct: 491 KEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K DA+ ++ +M S P+ + + I+L+GL
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V SM K + P+ +TY ++ G+ G P +A+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + L+ L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYL 314
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+ +
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
+ + M+++ P F IL+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILI 381
Score = 41.2 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + +M +A+ ++ M + PD TY +++G + A A
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + +S E + I+L GL + L
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNL 634
Score = 40.4 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P+ + Y L+ L + EA+++ + M + D PD +YT VI GF K+G A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
Y +M+ P + + ++ L
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAAL 244
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +G+ EA+ + M + + PD TY ++ K+G +A +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQG 348
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y++ LI A A+ GK+++AM V+ MR++ L PD+ TY VI K G DAM
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ L
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSL 454
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EA ++ SM + PD
Sbjct: 491 KEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K DA+ ++ +M S P+ + + I+L+GL
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V SM K + P+ +TY ++ G+ G P +A+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + L+ L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYL 314
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+ +
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
+ + M+++ P F IL+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILI 381
Score = 41.2 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + +M +A+ ++ M + PD TY +++G + A A
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + +S E + I+L GL + L
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNL 634
Score = 40.4 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P+ + Y L+ L + EA+++ + M + D PD +YT VI GF K+G A
Sbjct: 160 PNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
Y +M+ P + + ++ L
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAAL 244
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +G+ EA+ + M + + PD TY ++ K+G +A +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQG 348
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y++ LI A A+ GK+++AM V+ MR++ L PD+ TY VI K G DAM
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ L
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSL 454
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +P+ Y LI GKM+EA ++ SM + PD
Sbjct: 491 KEGRVIESEKLFDLMVRIG-VKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K DA+ ++ +M S P+ + + I+L+GL
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V SM K + P+ +TY ++ G+ G P +A+
Sbjct: 232 PNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + L+ L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYL 314
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+ +
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
+ + M+++ P F IL+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILI 381
Score = 41.2 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + +M +A+ ++ M + PD TY +++G + A A
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + +S E + I+L GL + L
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNL 634
Score = 40.8 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P+ + Y L+ L + EA+++ + M + D PD +YT VI GF K+G A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
Y +M+ P + + ++ L
Sbjct: 220 GTYHEMLDRGILPNVVTYNSIIAAL 244
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +G+ EA+ + M + + PD TY ++ K+G +A +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQG 348
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y++ LI A A+ GK+++AM V+ MR++ L PD+ TY VI K G DAM
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ L
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSL 454
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EA ++ SM + PD
Sbjct: 491 KEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K DA+ ++ +M S P+ + + I+L+GL
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V SM K + P+ +TY ++ G+ G P +A+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + L+ L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYL 314
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+ +
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
+ + M+++ P F IL+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILI 381
Score = 41.2 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + +M +A+ ++ M + PD TY +++G + A A
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + +S E + I+L GL + L
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNL 634
Score = 40.4 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P+ + Y L+ L + EA+++ + M + D PD +YT VI GF K+G A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
Y +M+ P + + ++ L
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAAL 244
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +G+ EA+ + M + + PD TY ++ K+G +A +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQG 348
>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
aristata]
Length = 431
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLC 293
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +E+ + L+ GL
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLC 363
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
JA +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 JAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 256
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
++M P+++ + L+ G L S
Sbjct: 305 IDEMSVKGLKPDKITYTTLIDGCCKEGDLDS 335
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD++TYT +I F K G +
Sbjct: 351 DEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 60.5 bits (145), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y++ LI A A+ GK+++AM V+ MR++ L PD+ TY VI K G DAM
Sbjct: 371 HPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMR 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ L
Sbjct: 431 YFEQMIDERLSPGNIVYNSLIHSL 454
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EA ++ SM + PD
Sbjct: 491 KEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K DA+ ++ +M S P+ + + I+L+GL
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLF 595
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I AL + M++AM+V SM K + P+ +TY ++ G+ G P +A+
Sbjct: 232 PNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGF 291
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + L+ L
Sbjct: 292 LKKMHSDGVEPDVVTYNSLMDYL 314
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+ +
Sbjct: 298 DGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
+ + M+++ P F IL+
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILI 381
Score = 41.2 bits (95), Expect = 0.43, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + +M +A+ ++ M + PD TY +++G + A A
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 605
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + +S E + I+L GL + L
Sbjct: 606 LYVGITESGTQLELSTYNIILHGLCKNNL 634
Score = 40.4 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P+ + Y L+ L + EA+++ + M + D PD +YT VI GF K+G A
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
Y +M+ P + + ++ L
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAAL 244
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +G+ EA+ + M + + PD TY ++ K+G +A +
Sbjct: 267 PNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKM 326
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 327 FDSMTKRGLKPEITTYGTLLQG 348
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I+ L ++GK+ E +V M K +FPD YT +I GF K G+ A
Sbjct: 177 KPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYK 236
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFEELFPEKHAYDPPEE 251
++ +M P+ + F L+ GL L +KK FE P++ Y +
Sbjct: 237 LFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFE---PDEVTYTALID 293
Query: 252 IFGKL 256
+ KL
Sbjct: 294 GYCKL 298
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ + LI L+ +GK+ EA +++ M K+ PD TYT +I G+ K G A +
Sbjct: 248 PDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFL 307
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M++ P + + L GL
Sbjct: 308 HNQMVQIGLTPNVVTYTALADGLC 331
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q + Y ++ L + G + +A+++ E M++ L PD+ TYT ++ + K G A
Sbjct: 352 QLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARE 411
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ +M+ P + F +L+ GL
Sbjct: 412 LLREMLDRGLQPTVVTFNVLMNGLC 436
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 1/123 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + + A K+F+ + K+ ++PD Y LI + G+M +A + M +
Sbjct: 255 ALICGLSGSGKVVEADKLFNEMIKKG-FEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQ 313
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L P+ TYT + G K G A + +M + + ++ GL +
Sbjct: 314 IGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQ 373
Query: 231 KVK 233
VK
Sbjct: 374 AVK 376
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I G++ + +Q+ + M+ + L P+ TY+ +I K G + +
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M+K P+ + + L+ G
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFC 226
>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 418
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++MI + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDG 250
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D + PD Y LI ++ ++ + +++ M L D+ TYT +I
Sbjct: 346 AKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G DG +A +++ M+ PP+ + + ILL GL +
Sbjct: 405 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 445
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A Q+ M ++ + P+ T+ +I F+K+G +A
Sbjct: 254 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 313
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y+DMIK P+ + L+ G H L K K+ FE + FP+ Y+ + F
Sbjct: 314 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRL-DKAKQMFEFMVSKDCFPDVVTYNTLIKGF 372
Query: 254 GK 255
K
Sbjct: 373 CK 374
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++D + K+ PD + Y L+ ++++A Q++E M +D FPD TY +I
Sbjct: 311 AEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 369
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+GF K D ++ +M + + + L++GL H +K F+++ +
Sbjct: 370 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF-HDGDCDNAQKVFKQMVSD 426
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L GK+ +A++V++ M+K ++ D YT +I G K G
Sbjct: 425 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 484
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +++ + P + + ++ GL LL+
Sbjct: 485 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 519
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I K+ P+ + LI A + GK EA ++++ M K + PD TY ++ GF
Sbjct: 282 DMIEKK--INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 339
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A ++E M+ P+ + + L+KG +SK +D ELF E
Sbjct: 340 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG-----FCKSKRVEDGTELFRE 387
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L ++ +T LA+ + + + + D I+ +I +L + +++A+ +++ M
Sbjct: 192 VVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 250
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + P+ TY+ +I G +DA + DMI+ P + F L+
Sbjct: 251 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 299
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 69 KKLIGKEALFVILGLKRFKD-DEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETIL 124
+ L+G + L F D D + QK K V + DI+ I L+ +
Sbjct: 391 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 450
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD ++K + + D YIY +I + + GK+++ ++ S+ + + P+ TY +I
Sbjct: 451 ALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 509
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A + + M + P + L++ L
Sbjct: 510 SGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 548
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L + EA + + M+++ P+S TY +IR L+DG A +
Sbjct: 499 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 558
Query: 199 IYEDM 203
+ +M
Sbjct: 559 LIREM 563
>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rotundifolia]
Length = 425
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 154 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 211
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 212 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 250
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 318 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 357
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKFTYTTLIDGCC 322
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD TYT +I F K G
Sbjct: 339 QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVW 398
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M ++ P + + +L+ G
Sbjct: 399 KGSKLLKEMQRNGHAPSVVTYNVLMNG 425
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D + PD Y LI ++ ++ + +++ M L D+ TYT +I
Sbjct: 384 AKQMFEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G DG +A +++ M+ PP+ + + ILL GL +
Sbjct: 443 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 483
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A Q+ M ++ + P+ T+ +I F+K+G +A
Sbjct: 292 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 351
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y+DMIK P+ + L+ G H L K K+ FE + FP+ Y+ + F
Sbjct: 352 LYDDMIKRSIDPDIFTYNSLVNGFCMHDRL-DKAKQMFEFMVSKDCFPDVVTYNTLIKGF 410
Query: 254 GK 255
K
Sbjct: 411 CK 412
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++D + K+ PD + Y L+ ++++A Q++E M +D FPD TY +I
Sbjct: 349 AEKLYDDMIKRS-IDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLI 407
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+GF K D ++ +M + + + L++GL H +K F+++ +
Sbjct: 408 KGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF-HDGDCDNAQKVFKQMVSD 464
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L GK+ +A++V++ M+K ++ D YT +I G K G
Sbjct: 463 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 522
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +++ + P + + ++ GL LL+
Sbjct: 523 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 557
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I K+ P+ + LI A + GK EA ++++ M K + PD TY ++ GF
Sbjct: 320 DMIEKK--INPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A ++E M+ P+ + + L+KG +SK +D ELF E
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKG-----FCKSKRVEDGTELFRE 425
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L ++ +T LA+ + + + + D I+ +I +L + +++A+ +++ M
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAK-IEADVVIFNTIIDSLCKYRHVDDALNLFKEMET 288
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + P+ TY+ +I G +DA + DMI+ P + F L+
Sbjct: 289 KGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 337
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 69 KKLIGKEALFVILGLKRFKD-DEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETIL 124
+ L+G + L F D D + QK K V + DI+ I L+ +
Sbjct: 429 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 488
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD ++K + + D YIY +I + + GK+++ ++ S+ + + P+ TY +I
Sbjct: 489 ALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 547
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A + + M + P + L++ L
Sbjct: 548 SGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHL 586
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L + EA + + M+++ P+S TY +IR L+DG A +
Sbjct: 537 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAE 596
Query: 199 IYEDM 203
+ +M
Sbjct: 597 LIREM 601
>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
fucata]
Length = 414
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + K+++A ++++ M + L P+S T+T +I G K+G AM
Sbjct: 192 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 251
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLC 276
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 248 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 306
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G KDG A + MI+ +++ + L+ GL
Sbjct: 307 IDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLC 346
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 143 IAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 200
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 201 LINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDG 239
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 228 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 287
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCC 311
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D +Y LI L R G +A ++ M L PD++TYT +I F K G
Sbjct: 328 QENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVW 387
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 388 KGSKLLKEMQRDGHVPSVVTYNVLMNG 414
>gi|356547426|ref|XP_003542113.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Glycine max]
Length = 825
Score = 60.5 bits (145), Expect = 7e-07, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q + A+K+F + K ++P+ Y LI + M A +V+ M+ DL P+
Sbjct: 567 KQHDMSSALKMFGQMMKHK-FKPNVITYTSLINGFCKKADMIRAEKVFSGMKSFDLVPNV 625
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT ++ GF K G P A +I+E M+ + P + F L+ GL
Sbjct: 626 VTYTTLVGGFFKAGKPERATSIFELMLMNGCLPNDATFHYLINGL 670
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y++ LI R G+++EA+++++ + ++ + P Y +I+GF K G DA++
Sbjct: 482 QPDVYVFATLIDGFIRNGELDEAIKIFKVIIRKGVDPGIVGYNAMIKGFCKFGKMTDALS 541
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+M P+E + ++ G + + S +K F ++ KH + P
Sbjct: 542 CLNEMNSVHHAPDEYTYSTVIDGYVKQHDMSSALKM-FGQMM--KHKFKP 588
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 2/115 (1%)
Query: 109 IVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+ A LI+ R E A+KIF +I ++ P Y +I + GKM +A+
Sbjct: 487 VFATLIDGFIRNGELDEAIKIFKVIIRKG-VDPGIVGYNAMIKGFCKFGKMTDALSCLNE 545
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
M PD TY+ VI G++K + A+ ++ M+K P + + L+ G
Sbjct: 546 MNSVHHAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGF 600
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY L+ L + G++ + M ++ PD + +I GF+++G +A+ I
Sbjct: 448 PDAQIYNILMSGLCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIKI 507
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ +I+ P + + ++KG
Sbjct: 508 FKVIIRKGVDPGIVGYNAMIKGF 530
Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y Y +I + M+ A++++ M K P+ TYT +I GF K A
Sbjct: 551 HAPDEYTYSTVIDGYVKQHDMSSALKMFGQMMKHKFKPNVITYTSLINGFCKKADMIRAE 610
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ M P + + L+ G
Sbjct: 611 KVFSGMKSFDLVPNVVTYTTLVGGFF 636
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSPADAM 197
+P + LI+A A +G ++ A+Q++ ++R+ + FP ++ G +K G A+
Sbjct: 127 KPTREAFSALILAYAESGSLDRALQLFHTVREMHNCFPTFVASNLLLNGLVKSGKVDVAL 186
Query: 198 NIYEDMIKSPD 208
+Y+ M+++ D
Sbjct: 187 QLYDKMLQTDD 197
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+I +I K D A+I+ ++ G+++ A+ V E M ++ +FPD+Q Y ++ G
Sbjct: 405 RIAEIGEKSDLVSYGAFIHGVVV-----AGEIDVALMVREKMMEKGVFPDAQIYNILMSG 459
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
K G + +M+ P+ F L+ G + + L +K
Sbjct: 460 LCKKGRIPAMKLLLSEMLDRNVQPDVYVFATLIDGFIRNGELDEAIK 506
>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
lycioides]
Length = 397
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 192 QPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 251
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 252 IYKQMLSQSLXPDLITYNTLIYGLC 276
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ + ++A +F+ I K W +P + L+ R G M+E ++ +M + PD
Sbjct: 137 KEGDIMVAQSVFNAITK--WGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPD 194
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 195 VYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDG 239
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 228 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDL 287
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCC 311
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 248 LAMEIYKQMLSQS-LXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 307 IDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLC 346
>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
montevidensis]
Length = 431
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + K+++A ++++ M + L P+S T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLSPDLITYNTLIYGLC 293
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQS-LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G KDG A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLC 363
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 IAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDG 256
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCC 328
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y LI L R G+ +A ++ M L PD++TYT +I F K G +
Sbjct: 351 DDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
citrodora]
Length = 380
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + + P+ T+T +I G K+G AM
Sbjct: 201 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAME 260
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 261 IYKQMLSQSLSPDLITYNTLIYGLC 285
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G++ +A + + M E L PD TYT +
Sbjct: 257 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTL 315
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 316 IDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLC 355
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 237 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDL 296
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 297 IDEMSMEGLKPDKITYTTLIDGCC 320
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + LI R G ++E ++ +M + PD TY+ +I G K+ DA
Sbjct: 166 RPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANE 225
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++++M+ P + F L+ G
Sbjct: 226 LFDEMLDKGMVPNGVTFTTLIDG 248
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++N+A +++E+M + + PD TYT +I G K+G+ A+++
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++MI+ P+ + + +L+ GL
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGL 513
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I + G ++ A Q+ + M K+ + PD+ TY+ +IRG ++ DA
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++E+M++ P+E + L+ G
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDG 477
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++ ++R++ +P+ + ++ L + G+M A +V++ M +E L PD
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+Y ++ G+ K G +++ ++ +M + P+ + F L+
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 300
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ QP Y LI + G+M+ A ++ M + + PD TY+ +I G+ K G+
Sbjct: 355 RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNL 414
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
A + + M+K P+ + + L++GL L D ELF
Sbjct: 415 DSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRL-----NDACELF 456
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD + LI A + G + +A+ + MR+ L + T+T +I GF K G
Sbjct: 286 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 345
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DA+ E+M K P + + L+ G
Sbjct: 346 DALLAVEEMRKCGIQPSVVCYNALING 372
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y L+ AL G++ EA+ V MR P++ TY ++ F + G A +
Sbjct: 150 PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 209
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
M + + P + F ++ GL + +K F+E+ E A D
Sbjct: 210 VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEG-ARKVFDEMVREGLAPD 257
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ PD Y L+ + G ++E++ V+ M + L PD T+T +I
Sbjct: 242 ARKVFDEMVREGL-APDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 300
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
K G+ A+ + M + E+ F L+ G L
Sbjct: 301 HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++ + ++W + D +Y LI R G + +A+ + M + P+S + ++
Sbjct: 572 ADKVYQSMLDRNW-KLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
RG ++G +A N +D++
Sbjct: 631 RGLFEEGMVVEADNAIQDLLTC 652
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q QPD + Y LI + G + +A+ + + M ++ + PD TY+ +I G K
Sbjct: 461 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK 520
Query: 195 DAMNIYEDMIKSPDPPEELPFRILL 219
+A + + P+ + + L+
Sbjct: 521 EAHRLLFKLYHEDPVPDNIKYDALM 545
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ DA Y LI ++G+M EA +++ M +++ P TY ++ G ++G DA N
Sbjct: 375 ETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWN 434
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEEIFGKL 256
++ +M PE + ILL GL + L + ELF E H + P +IF L
Sbjct: 435 LFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAM-----ELFHYLENHDFQPSIQIFNCL 489
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + D +QP I+ LI L + K+ A +++ + E L P+ TYT +I
Sbjct: 467 AMELFHYLENHD-FQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMI 525
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-------PLLRSKVKKDFE 237
G K G +A +++ M + P + F L++G + LL+ +KDF
Sbjct: 526 HGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFS 585
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI AL + GKM EA + + M + PD+ TY +I GF +G DA +
Sbjct: 305 HPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARD 364
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M + + + +L+ G
Sbjct: 365 LFVSMESKGIETDAVSYNVLING 387
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L R GK+ +A ++ M+ DL P+S TY ++ G K+ ++AM +
Sbjct: 411 PTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMEL 470
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + P F L+ GL
Sbjct: 471 FHYLENHDFQPSIQIFNCLIDGLC 494
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I + TG+ A ++ M E + P+ T+ +I K G +A +
Sbjct: 270 SPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANH 329
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + MI+ + P+ + L+ G
Sbjct: 330 LLKLMIQRGESPDTFTYNTLIDGFC 354
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FDI+ + PD Y LI ++ +++EA Q+++ M + L P+S T+T +I
Sbjct: 438 ARKVFDIMVNKGC-APDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLI 496
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G + G P A +++ M PP+ + + LL G H L
Sbjct: 497 SGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHL 540
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + LI L + G+ A ++++ M PD TY+ ++ GF K G +A+ +
Sbjct: 487 PNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALAL 546
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+E + KS P + +ILL G+ L +D +ELF
Sbjct: 547 FEALKKSQLKPNHVICKILLGGMCKAGKL-----EDAKELFSS 584
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 46/91 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y LI + +G+ +A +++ M + ++ PD T++ ++ K+G +A++
Sbjct: 276 SPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALS 335
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++ MI+ P+ + + L+ G+ L +
Sbjct: 336 VFGKMIQIAMEPDIVTYSSLIHGVCKSSLWK 366
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I +L + +NEA+ ++ MR + P TY +I G G A
Sbjct: 241 EPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASI 300
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M++ P+ + F IL+ L
Sbjct: 301 LFKEMLEWNMKPDVVTFSILVDALC 325
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + + + G ++EA + M + L P+ TY ++ G+ +A
Sbjct: 381 RPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARK 440
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+++ M+ P+ L + IL+KG
Sbjct: 441 VFDIMVNKGCAPDVLSYNILIKG 463
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ +M+EA +V++ M + PD +Y +I+G+ K +A
Sbjct: 416 RPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M P + L+ GL
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLC 500
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++P + LI L G++ EAM+ + + P T+T ++ G K G + A+
Sbjct: 170 FKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAI 229
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ M++ PE + + I++ L + L+ V
Sbjct: 230 VWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAV 264
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 105 LKMDIV--AVLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+K D+V ++L++ +E +L A+ +F + Q +PD Y LI + ++ E+
Sbjct: 310 MKPDVVTFSILVDALCKEGVVLEALSVFGKM-IQIAMEPDIVTYSSLIHGVCKSSLWKES 368
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ M ++ PD T++ + F K G ++A +I MI+ P + + L+ G
Sbjct: 369 STLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDG 428
Query: 222 LLPHP 226
H
Sbjct: 429 YCLHS 433
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++N+A +++E+M + + PD TYT +I G K+G+ A+++
Sbjct: 289 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 348
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++MI+ P+ + + +L+ GL
Sbjct: 349 HDEMIRKGVLPDVVTYSVLINGL 371
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I + G ++ A Q+ + M K+ + PD+ TY+ +IRG ++ DA
Sbjct: 253 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 312
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++E+M++ P+E + L+ G
Sbjct: 313 LFENMLQLGVQPDEFTYTTLIDG 335
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++ ++R++ +P+ + ++ L + G+M A +V++ M +E L PD
Sbjct: 57 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 116
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+Y ++ G+ K G +++ ++ +M + P+ + F L+
Sbjct: 117 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 158
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI + G+M+ A ++ M + + PD TY+ +I G+ K G+ A
Sbjct: 218 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 277
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ + M+K P+ + + L++GL L D ELF
Sbjct: 278 LNQKMLKKGVLPDAITYSSLIRGLCEEKRL-----NDACELF 314
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD + LI A + G + +A+ + MR+ L + T+T +I GF K G
Sbjct: 144 QRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLD 203
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DA+ E+M K P + + L+ G
Sbjct: 204 DALLAVEEMRKCGIQPSVVCYNALING 230
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y L+ AL G++ EA+ V MR P++ TY ++ F + G A +
Sbjct: 8 PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 67
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
M + + P + F ++ GL + +K F+E+ E A D
Sbjct: 68 VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEG-ARKVFDEMVREGLAPD 115
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ PD Y L+ + G ++E++ V+ M + L PD T+T +I
Sbjct: 100 ARKVFDEMVREGL-APDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 158
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
K G+ A+ + M + E+ F L+ G L
Sbjct: 159 HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 202
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++ + ++W + D +Y LI R G + +A+ + M + P+S + ++
Sbjct: 430 ADKVYQSMLDRNW-KLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 488
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
RG ++G +A N +D++
Sbjct: 489 RGLFEEGMVVEADNAIQDLLTC 510
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q QPD + Y LI + G + +A+ + + M ++ + PD TY+ +I G K
Sbjct: 319 QLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK 378
Query: 195 DA 196
+A
Sbjct: 379 EA 380
>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 418
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++E M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ M+ P+ + + L+ GL
Sbjct: 263 VYKQMLSQSLLPDLITYNTLIYGLC 287
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
LA +FD I K W +P Y L+ R G +NE ++ +M + PD TY+
Sbjct: 154 LAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSV 211
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++E+M+ P + F L+ G
Sbjct: 212 LINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDG 250
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM+V++ M + L PD TY +I G K G+ A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 299 MDEMSMKGLKPDKITYTTLIDGCC 322
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++++ + Q PD Y LI L + G +N+A + + M + L PD TYT +
Sbjct: 259 LAMEVYKQMLSQSLL-PDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 318 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 357
>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
Length = 418
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M+ P+ + + L+ GL
Sbjct: 263 IYXQMLSQSLSPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYXQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK + + + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLC 357
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM+++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 XDEMSMKGLKPDKITYTTLIDG 320
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
macrostachya]
Length = 414
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K G AM
Sbjct: 192 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAME 251
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 252 IYKQMLSQSLSPDLITYNTLIYGLC 276
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI ++G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 228 PNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 287
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 288 IDEMSMKGLKPDKITYTTLIDGCC 311
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 248 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 306
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 307 IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLC 346
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +F+ I K W +P + L+ R G ++E ++ +M + PD TY+
Sbjct: 143 VAQSVFNAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 200
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 201 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 239
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A +V M L PD+ TYT +I F K G
Sbjct: 328 QENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVW 387
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 388 TGSKLLKEMQRDGHVPSVVTYNVLMNG 414
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
M +++ L + ET+ A K+F ++++ +PD+ + L+ AL + G++++A+++ +
Sbjct: 185 MTYSSLITGLGKDGETVKAFKLFQEMKRRG-RKPDSITFTALMDALGKAGRVDDALELLD 243
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
M++ + P TY +I GF K G +A N+ ++M ++ P+ + + L+ GL+
Sbjct: 244 EMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKAS 303
Query: 227 LL 228
L
Sbjct: 304 QL 305
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F +R++ PD + Y LI L + G+ +AM++ E M + PD TY+ +I
Sbjct: 133 AFTLFAEMRERGCV-PDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLI 191
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G KDG A ++++M + P+ + F L+ L
Sbjct: 192 TGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDAL 229
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G+++EA ++ MR+ PD+ TY +I G K G AM +
Sbjct: 112 PDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMEL 171
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M + PP+ + + L+ GL
Sbjct: 172 LEEMERHGCPPDVMTYSSLITGL 194
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y LI L + +++EA QV + M KE PD+ TY +I G K G
Sbjct: 281 KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLL 340
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA +++ M P+ + + L+ L
Sbjct: 341 NDAGRLFDRMKSKGCNPDVVTYSTLITAL 369
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + Y +I L + G++++A +++ MR + L PD TY + + G +A
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARK 450
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I+EDM +S P+ + LL GL
Sbjct: 451 IFEDMKESGLLPDVATYDALLLGL 474
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y L+ L + G+ +EA+++ MR PD +TY +I K G ++A
Sbjct: 76 KPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFT 135
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRS-KVKKDFEELFPEKHAYDP 248
++ +M + P+ + L+ GL + RS K + EE+ E+H P
Sbjct: 136 LFAEMRERGCVPDTFTYNSLIYGL--GKVGRSQKAMELLEEM--ERHGCPP 182
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+++ L + + A ++F +R + PD Y + +L R G+ EA +++E M+
Sbjct: 398 CSIITVLGKAGQVDDADRLFSEMRGKG-LSPDVITYNAFLNSLGRGGRFKEARKIFEDMK 456
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL------ 223
+ L PD TY ++ G K DA + +++I+ + L F L+ L
Sbjct: 457 ESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVD 516
Query: 224 -PHPLLRSKVKKDFEELFPEKHAYDP 248
H LL+ K L+P +Y+
Sbjct: 517 EAHELLQFANSKG---LWPGASSYNA 539
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD ++ + PD Y LI AL + ++ A ++E M + PD TY +I
Sbjct: 343 AGRLFDRMKSKGC-NPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSII 401
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE-----L 239
K G DA ++ +M P+ + + L L + + +K FE+ L
Sbjct: 402 TVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFK-EARKIFEDMKESGL 460
Query: 240 FPEKHAYDP 248
P+ YD
Sbjct: 461 LPDVATYDA 469
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G+ +A ++++ M++ PDS T+T ++ K G DA+ +
Sbjct: 182 PDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALEL 241
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M + P + + L+ G
Sbjct: 242 LDEMKERGVKPGVVTYNALIAG 263
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G +N+A ++++ M+ + PD TY+ +I K A +
Sbjct: 322 PDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVL 381
Query: 200 YEDM 203
+E+M
Sbjct: 382 FEEM 385
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F+ ++ W PD Y LI +L R GK A++V M+ + P+ TY ++
Sbjct: 31 LFEELKAAKW-TPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCL 89
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G +A+ + +M + P+ + L+ L
Sbjct: 90 GKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI ALA+ G+++EA E ++++ PD +Y+ +I + G A +
Sbjct: 532 PGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFEL 591
Query: 200 YEDMIK 205
E+M K
Sbjct: 592 LEEMSK 597
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++R+Q WY+P A +Y LI+ L + + +A ++++ M +E ++YT ++
Sbjct: 138 ALKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGCEVSHESYTALL 197
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + G +A +I +M SPD P+ + IL+K L
Sbjct: 198 SAYSRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCL 237
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+I+ ++ P Y LI ++G+++EA + M + L PD+ TY+ ++
Sbjct: 241 AQKLFNIMVRKGC-APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLM 299
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+GF +DG P DA + E+M P+ + + I+L GL
Sbjct: 300 KGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLC 338
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y +I L + G NEA +++ M P+S TY +I+GFL++G ++A
Sbjct: 394 QPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGR 453
Query: 199 IYEDMIKSPDPPEELPFRIL 218
+ E+M+ + F++L
Sbjct: 454 LIEEMVGRGFSADSSTFQML 473
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + T +A+++ + ++ +P+ +Y +I +L + + EAM+ M + P
Sbjct: 92 LCKMGSTTMAIQLLKKMEEKGC-KPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISP 150
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ TY+ ++ GF G +A ++++ M++ P+ + F IL+ GL
Sbjct: 151 NVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGL 197
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +IY LI + GK+ A +++ ++ + + PD TYT +I G LK G +A
Sbjct: 359 EPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACE 418
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ DM P + ++++G L
Sbjct: 419 LFRDMAVHGCLPNSCTYNVIIQGFL 443
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G+ +A ++ E MR L PD TY+ V+ G K G +A +
Sbjct: 290 PDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFEL 349
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ M +S P + IL++G+ L + ++ F LF
Sbjct: 350 LKAMQESKIEPNIFIYTILIQGMCNFGKLEA-ARELFSNLF 389
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y ++ G+ NEA +++ M + ++ PD+ T+ ++ G K+G +A
Sbjct: 149 SPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQC 208
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++E MI+ P + L+ G
Sbjct: 209 VFETMIEKGVEPNVNTYNALMDG 231
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L++ G + EA V+E+M ++ + P+ TY ++ G+ +A +
Sbjct: 185 PDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKL 244
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M++ P + IL+KG
Sbjct: 245 FNIMVRKGCAPSVRSYNILIKG 266
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/112 (20%), Positives = 50/112 (44%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L++ +E IL + + +P+ Y L+ +M+EA +++ M ++
Sbjct: 192 ILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRK 251
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
P ++Y +I+G K G +A + +M P+ + + L+KG
Sbjct: 252 GCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + L+ L+ K+ +A+++++ M K PD TY+ +I G K GS A+
Sbjct: 44 QPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQ 103
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + M + P + + ++ L L+
Sbjct: 104 LLKKMEEKGCKPNVVVYSTIIDSLCKDKLI 133
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++N+A +++E+M + + PD TYT +I G K+G+ A+++
Sbjct: 431 PDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSL 490
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++MI+ P+ + + +L+ GL
Sbjct: 491 HDEMIRKGVLPDVVTYSVLINGL 513
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I + G ++ A Q+ + M K+ + PD+ TY+ +IRG ++ DA
Sbjct: 395 KPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACE 454
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++E+M++ P+E + L+ G
Sbjct: 455 LFENMLQLGVQPDEFTYTTLIDG 477
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++ ++R++ +P+ + ++ L + G+M A +V++ M +E L PD
Sbjct: 199 RAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDV 258
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+Y ++ G+ K G +++ ++ +M + P+ + F L+
Sbjct: 259 VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 300
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI + G+M+ A ++ M + + PD TY+ +I G+ K G+ A
Sbjct: 360 QPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQ 419
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ + M+K P+ + + L++GL L D ELF
Sbjct: 420 LNQKMLKKGVLPDAITYSSLIRGLCEEKRL-----NDACELF 456
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A + G + +A+ + MR+ L + T+T +I GF K G DA+
Sbjct: 291 PDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLA 350
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E+M K P + + L+ G
Sbjct: 351 VEEMRKCGIQPSVVCYNALING 372
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ PD Y L+ + G ++E++ V+ M + L PD T+T +I
Sbjct: 242 ARKVFDEMVREGL-APDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLI 300
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
K G+ A+ + M + E+ F L+ G L
Sbjct: 301 HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y L+ AL G++ EA+ V MR P++ TY ++ F + G A +
Sbjct: 150 PNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERV 209
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
M + + P + F ++ GL + +K F+E+ E A D
Sbjct: 210 VSLMREEGNAKPNLVTFNSMVNGLCKAGRMEG-ARKVFDEMVREGLAPD 257
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++ + ++W + D +Y LI R G + +A+ + M + P+S + ++
Sbjct: 572 ADKVYQSMLDRNW-KLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLV 630
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
RG ++G +A N +D++
Sbjct: 631 RGLFEEGMVVEADNAIQDLLTC 652
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 38/81 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + Y LI + G + +A+ + + M ++ + PD TY+ +I G K +A
Sbjct: 465 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 524
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ + P+ + + L+
Sbjct: 525 LLFKLYHEDPVPDNIKYDALM 545
>gi|125524506|gb|EAY72620.1| hypothetical protein OsI_00485 [Oryza sativa Indica Group]
Length = 257
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 62 RGSLWRGKKLIGKEALFVILGLKRFKDDEEK---LQKFIKTHVLRLLKMDIVAVLIELER 118
RG L RG+ L EA+ + LKR + T + RLLK D++A + EL+R
Sbjct: 40 RGPLQRGRSL-STEAILAVQSLKRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQR 98
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV-----WESMRKEDL 173
Q LA+ + R + WY+PD +Y + + T A+ E +
Sbjct: 99 QGHWSLALAALHVARAEPWYRPDPALYATFVSSSPATEDGAAAVDALVEAFLEEKERGGG 158
Query: 174 FPDSQ----TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGL 222
F D + T ++R + G A +YE ++ +E +R++ +G+
Sbjct: 159 FVDGEEDVYKLTRLVRALVAKGRARAAWRVYEAAVRMGGCEVDEYMYRVMARGM 212
>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
herrerae]
Length = 395
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 190 QPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 249
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L GL
Sbjct: 250 IYKQMLSQSLSPDLITYNTLTYGLC 274
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
LA +FD I K W +P + L+ R G ++E ++ +M + PD TY+
Sbjct: 141 LAQSVFDAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSV 198
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 199 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDG 237
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY + G K G A ++
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDL 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 286 IDEMSMKGLKPDKITYTTLIDGCC 309
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y L L + G + +A + + M + L PD TYT +
Sbjct: 246 LAMEIYKQMLSQS-LSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 304
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 305 IDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLC 344
>gi|115434634|ref|NP_001042075.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|9757668|dbj|BAB08187.1| unnamed protein product [Oryza sativa Japonica Group]
gi|15528644|dbj|BAB64665.1| Tha8 -like [Oryza sativa Japonica Group]
gi|113531606|dbj|BAF03989.1| Os01g0158100 [Oryza sativa Japonica Group]
gi|125569105|gb|EAZ10620.1| hypothetical protein OsJ_00452 [Oryza sativa Japonica Group]
Length = 267
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 14/174 (8%)
Query: 62 RGSLWRGKKLIGKEALFVILGLKRFKDDEEK---LQKFIKTHVLRLLKMDIVAVLIELER 118
RG L RG+ L EA+ + LKR + T + RLLK D++A + EL+R
Sbjct: 40 RGPLQRGRSL-STEAILAVQSLKRLTSSDRSPAAAAAAASTSLGRLLKGDLLAAMAELQR 98
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV-----WESMRKEDL 173
Q LA+ + R + WY+PD +Y + + T A+ E +
Sbjct: 99 QGHWSLALAALHVARAEPWYRPDPALYATFVSSSPATEDGAAAVDALVEAFLEEKERGGG 158
Query: 174 FPDSQ----TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGL 222
F D + T ++R + G A +YE ++ +E +R++ +G+
Sbjct: 159 FVDGEEDVYKLTRLVRALVAKGRARAAWRVYEAAVRMGGCEVDEYMYRVMARGM 212
>gi|255541126|ref|XP_002511627.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548807|gb|EEF50296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1163
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y L+ L R GK+N A V M K+ +L PD TYT ++RG+ +A+
Sbjct: 260 PDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKSTNLNPDVVTYTTLVRGYCMKHEIDEAL 319
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
++E+M+ P E+ + L+KGL + K+K+ FE
Sbjct: 320 VVFEEMVSKGLKPNEITYNTLIKGLCEVQKI-DKIKQIFE 358
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R +T A ++F + K+ P ++ K LI R G ++ M + D P
Sbjct: 457 LCRNGKTAKAERVFRQLMKRGTQDPLSF--KILIKGHCREGTFEAGYELLVLMLRRDFVP 514
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D +TY +I G L+ G P A E MIKS PE F +L LL
Sbjct: 515 DLETYQSLIDGLLQKGEPLVAYQTLEKMIKSSHVPETSTFHSILARLL 562
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
+V++F+ + K P + L++ L + G+ N A V++ M + PD+ T+ +
Sbjct: 175 SVQVFNSM-KSVGVSPSVVTFNSLLLILLKRGRTNMAQSVFDEMLSTYGVTPDTYTFNIL 233
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKD 235
IRGF K+ + +++M + P+ + + L+ GL + H ++ VKK
Sbjct: 234 IRGFCKNSMVDEGFRFFKEMSRFKCDPDLVTYNTLVDGLCRAGKVNIAHNVVNGMVKKS 292
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+IF+ + PD L+ A G +N+A++V+E M ++ PDS TY+ +IR
Sbjct: 355 QIFEGALGGGGFIPDTCTLNTLMNAHCNAGNLNDALEVFEKMMVLNVRPDSATYSVLIRN 414
Query: 187 FLKDGSPADAMNIYEDM 203
+ G+ A +++++
Sbjct: 415 LCQRGNFERAEQLFDEL 431
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E AVK+FD + + Y P+ Y LI + +M++A ++E M +++L P++
Sbjct: 325 QSEMDEAVKVFDTM-VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 383
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
TY ++ G G DA+ ++ +M+ P+ +RILL
Sbjct: 384 TYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILL 424
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G N A+++ SM + + PD YT +I
Sbjct: 156 ALHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSII 214
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A N++ M+ P+ + L+ L
Sbjct: 215 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLC 253
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 128 IFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+F + + D + PD Y LI + + A V + K L PD+ T+T +IR
Sbjct: 86 VFSLSNQMDSFGIPPDVYTLNILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIR 145
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +G DA+++++ MI P + + L+ GL
Sbjct: 146 GLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 183
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I + R G++ A ++ ++ + L P+ +TYT +I G + G +A +
Sbjct: 450 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 509
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P+ + + +GLL
Sbjct: 510 FMEMDGNGCSPDGCTYNTITQGLL 533
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L+ L + ++EAM + +++ ++ PD Q YT VI G + G A +I
Sbjct: 415 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 474
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ ++ P + I++ GL LL + K F E+
Sbjct: 475 FSNLSSKGLRPNVRTYTIMINGLCRRGLL-DEANKLFMEM 513
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + LI L GK+ +A+ +++ M E P+ TY +I G K G+ A+
Sbjct: 134 QPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIR 193
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ + + ++ L
Sbjct: 194 LLRSMEQGNCQPDVVVYTSIIDSLC 218
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD I+ ++ AL + GK+ EA V + M + P+ TY ++ G +A+ +
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ + P + + L+ G
Sbjct: 335 FDTMVHNGYAPNVISYNTLING 356
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q QPD +Y +I +L + ++ EA ++ M + + PD TYT +I
Sbjct: 199 EQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEW 258
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ MI S P+ + F ++ L
Sbjct: 259 KHVTTLLNQMINSKIMPDVVIFSTVVDALC 288
>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + D + KQD +P+A Y L+ L R +++EA +++E MRKE++ D+ Y ++
Sbjct: 196 ALSLLDEMPKQDC-RPNAMTYSTLMHFLCRNCRVDEAFELFERMRKEEIDADTVVYNILV 254
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G ++G A ++++ M P +++LL GL+
Sbjct: 255 SGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVA 294
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + LI L + G+ NEA+ + + M K+D P++ TY+ ++ ++ +A ++
Sbjct: 176 DTCCFNILIKGLCQFGRFNEALSLLDEMPKQDCRPNAMTYSTLMHFLCRNCRVDEAFELF 235
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E M K + + + IL+ GL
Sbjct: 236 ERMRKEEIDADTVVYNILVSGLC 258
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ +RK++ D +Y L+ L R G++ A +++SM + P+S TY ++
Sbjct: 231 AFELFERMRKEE-IDADTVVYNILVSGLCREGRVTSAYDLFKSMSSQGCHPNSGTYQVLL 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDF 236
G + + +A ++ M P +++L+ G H +L+ V + F
Sbjct: 290 DGLVASKNFVEAKDLVGMMSAESLRPSFSSYKLLIDGFCSVNCLDDAHHVLKQMVDQGF 348
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 11/166 (6%)
Query: 79 VILGL---KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQ 135
VI GL RF + E+ K ++ +L + + ++ L R T A KIF + K+
Sbjct: 554 VINGLSKENRFSEAEKICDKMVEQGLLPNV-ITYTTLIDGLCRNGRTQFAFKIFHDMEKR 612
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
P+ Y Y LI L + GK +EA + + M ++ L PD T+T +I GF+ G
Sbjct: 613 KCL-PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDH 671
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
A + M+ P + +LLKGL LL E++FP
Sbjct: 672 AFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLE------EKIFP 711
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A++ L R + +A+ ++ + K+ P+ Y LI L G+ + A++++ M
Sbjct: 342 TALISGLSRLGKLEVAIGLYHKMLKEGLV-PNTVTYNALINELCVGGRFSTALKIFHWME 400
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++QTY E+I+G G AM ++E M+K P + + L+ G L
Sbjct: 401 GHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ E IL+ +IF Q PD + Y LI+ R ++ A V++ M KE P+S
Sbjct: 215 REAELILS-QIF-----QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 268
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G +G +A+++ E+MI+ P + + + L
Sbjct: 269 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + LI L++ GK+ EA + + + DL PD TYT +I G ++ + A
Sbjct: 195 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 254
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+++ M+K P + + L+ GL
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLC 279
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I L++ + +EA ++ + M ++ L P+ TYT +I G ++G A
Sbjct: 545 NPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFK 604
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+ DM K P + L+ GL
Sbjct: 605 IFHDMEKRKCLPNLYTYSSLIYGLC 629
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D++ K++ +PD + Y +L+ ++ GK+ A ++ M + L P+ +YT +I
Sbjct: 462 AARLLDLM-KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALI 520
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G KDG A+++ + M + P + ++ GL
Sbjct: 521 DGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGL 558
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI G +N A ++ + M++ PD TY E++ GF K G A
Sbjct: 441 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 500
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M++ P + + L+ G
Sbjct: 501 FQEMVECGLNPNPVSYTALIDG 522
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF + + Y ++I L G + +AM ++E M K P TY +I
Sbjct: 392 ALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLI 450
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+L G+ +A + + M ++ P+E + L+ G
Sbjct: 451 NGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 487
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 52/141 (36%), Gaps = 36/141 (25%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM--------- 168
R LA +FD + K+ P++ Y LI L G+++EA+ + E M
Sbjct: 245 RNRNLDLAFGVFDRMVKEGC-DPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTV 303
Query: 169 --------------------------RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+K P+ QTYT +I G + G A+ +Y
Sbjct: 304 YTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHK 363
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M+K P + + L+ L
Sbjct: 364 MLKEGLVPNTVTYNALINELC 384
>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + GK++EA +++ M L P+ T+T +I G K+ AM
Sbjct: 203 QPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + LI + G ++E ++ +M PD
Sbjct: 148 KEGEMRLAQSVFDAITK--WGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+G +A ++ +M+ + P + F L+ G
Sbjct: 206 VYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHG 250
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + K++ AM++++ M + L PD TY +I G K G ++
Sbjct: 239 PNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI + P+++ + L+ G
Sbjct: 299 IDEMIMNGLKPDKISYTTLIDG 320
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ E+ LA++I+ + Q PD Y LI L + G++ + + + M L PD
Sbjct: 253 KNEKVDLAMEIYKQMLSQGL-SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDK 311
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+YT +I G K+G A+ + MI+ +++ + L+ L
Sbjct: 312 ISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLC 357
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y Y + L+ + G+M A V++++ K L P ++ +I G++K G +
Sbjct: 132 YPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGF 191
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M S P+ + IL+ GL L + ELF E
Sbjct: 192 RLKSAMHASGAQPDVYTYSILINGLCKEGKL-----DEANELFNE 231
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K F + +D PD Y +I + G M EA +++ M + L PDS T+TE+I
Sbjct: 370 ASKFFYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 428
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
G+ K G DA ++ MI++ P + + L+ GL L S
Sbjct: 429 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDS 474
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ K+ +P++YIY +I L R K+ EA + + M ++ + PD+ YT +I GF K G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + +M P+ L + ++ G
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFC 397
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y ++ L ++G + EA+++ L D+ TYT ++ + K G A
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I ++M+ P + F +L+ G H +L
Sbjct: 548 ILKEMLGKGLQPTIVTFNVLMNGFCLHGML 577
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI + G + A + + M D+ PD TYT +I GF + G +A +
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M P+ + F L+ G
Sbjct: 409 FHEMFCKGLEPDSVTFTELING 430
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD+ + +LI + G M +A +V M + P+ TYT +I G K+G A
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M K P + ++ GL + VK
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 512
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD Y ++ R G++++ ++ E M+++ L P+S Y +I + A+A
Sbjct: 277 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 336
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
+ +MI+ P+ + + L+ G +R+ K F E H+ D
Sbjct: 337 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK-----FFYEMHSRD 381
>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
cayennensis]
Length = 418
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + GK++EA +++ M L P+ T+T +I G K+ AM
Sbjct: 203 QPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQGLSPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + LI + G ++E ++ +M PD
Sbjct: 148 KEGEMRLAQSVFDAITK--WGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+G +A ++ +M+ + P + F L+ G
Sbjct: 206 VYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHG 250
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + K++ AM++++ M + L PD TY +I G K G ++
Sbjct: 239 PNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI + P+++ + L+ G
Sbjct: 299 IDEMIMNGLKPDKISYTTLIDG 320
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ E+ LA++I+ + Q PD Y LI L + G++ + + + M L PD
Sbjct: 253 KNEKVDLAMEIYKQMLSQGL-SPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDK 311
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+YT +I G K+G A+ + MI+ +++ + L+ L
Sbjct: 312 ISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLC 357
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y Y + L+ + G+M A V++++ K L P ++ +I G++K G +
Sbjct: 132 YPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGF 191
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M S P+ + IL+ GL L + ELF E
Sbjct: 192 RLKSAMHASGAQPDVYTYSILINGLCKEGKL-----DEANELFNE 231
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+V+ L +Q A ++FD + + + PD + LI + G++ + ++V+ M +
Sbjct: 544 SVIDGLCKQSRLDEATQMFDSMGSKG-FSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGR 602
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ ++ TY +I GF + G+ A++I+++MI S P+ + R +L GL L+
Sbjct: 603 RGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKR 662
Query: 231 KVK 233
V+
Sbjct: 663 AVQ 665
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + PD T+T +I G+ K G D + +
Sbjct: 537 PDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEV 596
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + + +R L+ G
Sbjct: 597 FCEMGRRGIVANAITYRTLIHGFC 620
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI L GK +EA +++E M L PD+ TY VI G K +A
Sbjct: 501 EPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQ 560
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+++ M P+ + F L+ G
Sbjct: 561 MFDSMGSKGFSPDVVTFTTLING 583
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI ++++ M++ M + L ++ TYT +I GF + G+ A++
Sbjct: 385 SPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALD 444
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ ++MI S P + LL GL + L KD E+F
Sbjct: 445 LLQEMISSGVCPNVVTCNTLLDGLCNNGKL-----KDALEMF 481
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 55/108 (50%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ + +T+ A+ + + + +P+ IY +I L + G+ +A ++ M+++ + P
Sbjct: 222 MCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISP 281
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ TY +I GF G ++A + +M + P+ + F +L+ L+
Sbjct: 282 NLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALV 329
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRK-----------EDLFPDSQTYTEVIRGFL 188
P+ L+ L GK+ +A+++++ M+K D+ PD QTY +I G +
Sbjct: 456 PNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLI 515
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G ++A +YE+M P+ + + ++ GL L
Sbjct: 516 NEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRL 555
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI AL + GK EA +++ M + P++ TY +I GF K A
Sbjct: 315 SPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAER 374
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P+ + F IL+ G
Sbjct: 375 MFYLMATKGCSPDVITFSILIDG 397
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + Y +I +G+ +EA ++ M + + PD T++ +I +K+G +A
Sbjct: 280 SPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEE 339
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y +M+ P + + ++ G
Sbjct: 340 LYNEMLPRGIIPNTITYNSMIDGF 363
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A KI D ++K + P+ Y Y L+ + GK+ EA Q ++ ++K L D+
Sbjct: 280 RAGEVERAKKILDFMKK-NGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDT 338
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
YT ++ F ++G +AM + +M S + L + ++L+GL
Sbjct: 339 VGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGL 383
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL-FPDSQTYTEVIRGFLKDGSPADAM 197
QP+ I+ L+ + G +N A V E M++ + +P+S TY+ ++ +A+
Sbjct: 193 QPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSITYSTLMDCLFAHSRSKEAV 252
Query: 198 NIYEDMIK----SPDPPEELPFRILLKGLL 223
++EDMI SPDP + F +++ G
Sbjct: 253 ELFEDMISKEGISPDP---VTFNVMINGFC 279
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + FD ++K + D Y L+ R G+ +EAM++ M+ D+ TY ++
Sbjct: 322 AKQTFDEVKKTG-LKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVIL 380
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
RG +G +A+ + + + +RI+L L + L VK
Sbjct: 381 RGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNALCCNGELEKAVK 429
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 48/96 (50%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + ++ PD + +I R G++ A ++ + M+K P+ Y+ ++
Sbjct: 251 AVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALM 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
GF K G +A ++++ K+ + + + L+
Sbjct: 311 NGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMN 346
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P++ Y L+ L + EA++++E M KE + PD T+ +I GF + G A
Sbjct: 230 PNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK 289
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I + M K+ P + L+ G ++ + K+ F+E+
Sbjct: 290 ILDFMKKNGCNPNVYNYSALMNGFCKVGKIQ-EAKQTFDEV 329
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
M +VLI+ +E + K + Q P+ Y LI G +N A +++
Sbjct: 307 MVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFL 366
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
SM + L PD +YT +I G+ K +AMN+Y +M++ P + LLKGL
Sbjct: 367 SMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGL 422
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 89 DEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
D +KL +KT+ + L L + + A+++F+ ++ + ++ + Y L
Sbjct: 430 DAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYN-FKLNIENYSCL 488
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
I L + GK+ A +++E + +E L PD TY +I GF K G +A ++E M ++
Sbjct: 489 IDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGC 548
Query: 209 PPEELPFRILLKGLL 223
P+ + + LL G
Sbjct: 549 TPDIIAYNTLLCGFC 563
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y +I L + G+ +EA +++E M+ + + PD +Y+ +I GF G + +
Sbjct: 234 KPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKH 293
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M+ P+ + F +L+ L
Sbjct: 294 LFDEMVDQGVQPDMVTFSVLIDTLC 318
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 20/151 (13%)
Query: 104 LLKMDIVA-VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
L + I+A L + R E + A+ I+R+ Y P+ Y LI L +++EA
Sbjct: 126 LFTLSILANCLCNVNRVSEALAAMA--GILRR--GYIPNVVTYTTLIKGLCMEHRISEAT 181
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP------PEELPFR 216
+++ M+K P++ TY +I+G + G+ A+ ++++M+ P + +
Sbjct: 182 RLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYS 241
Query: 217 ILLKGLLPHPLLRSKVKKDFE--ELFPEKHA 245
I++ GL KV ++ E ELF E A
Sbjct: 242 IIIDGL-------CKVGREDEAKELFEEMKA 265
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD + Q QPD + LI L + GK+ EA ++ E M + + P+ TY +I GF
Sbjct: 294 LFDEMVDQG-VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGF 352
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G A ++ M P+E+ + L+ G
Sbjct: 353 CMVGDLNSARELFLSMPSKGLEPDEISYTTLING 386
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI +T K+ EAM ++ M + P+ TY +++G + G DA
Sbjct: 374 EPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKK 433
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
++ M + I L GL + L + ELF E +Y+
Sbjct: 434 LFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAM-----ELFNELKSYN 477
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L ++ R++E A ++F+ ++ Q PD Y LI GK +++ +++ M
Sbjct: 243 IIDGLCKVGREDE---AKELFEEMKAQGMI-PDVISYSTLIHGFCCAGKWDQSKHLFDEM 298
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + PD T++ +I K+G +A + E MI+ P + + L+ G
Sbjct: 299 VDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFC 353
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 5/109 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
Q+ QPD Y +I + G+++ A ++E M + PD Y ++ GF +
Sbjct: 509 SQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKL 568
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + + M++ P I++ L + + K F +L P+
Sbjct: 569 EEVIKLLHKMVQKDVSPNAASCTIVVD-----MLCKDEKYKKFVDLLPK 612
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + L L +++EA+ + + P+ TYT +I+G + ++A
Sbjct: 123 SPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATR 182
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M K P + + L+KGL
Sbjct: 183 LFLRMQKLGCTPNAVTYGTLIKGLC 207
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+A+ E QE + AV + D++ + QP+ Y ++ A + G++ A + M
Sbjct: 241 ILALCREFRMQE--VFAV-VGDMVGRG--LQPNVITYTTIVNAFCKAGELRMACAILARM 295
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
P+ T+T ++ G DG DA+++++ M+ P + + +L++GL L
Sbjct: 296 VITGCTPNVATFTALVGGLFNDGRVHDALDMWKCMVAEGWAPSTVSYNVLIRGLCSVGDL 355
Query: 229 R--SKVKKDFEE--LFPEKHAYDPPEEIFGK 255
+ S V D E+ FP Y + F K
Sbjct: 356 KGASSVLNDMEQHGCFPNARTYSTLIDGFSK 386
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ ++ + + W P Y LI L G + A V M + FP+++TY+ +I
Sbjct: 323 ALDMWKCMVAEGW-APSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNARTYSTLI 381
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF K G A++I+ DM +S P + + ++ G+ L+ ++ + +++ E
Sbjct: 382 DGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMV-GVFCKKLMFNQAESLIDKMLVENC 440
Query: 245 AYDPPEEI 252
PP +
Sbjct: 441 ---PPNTV 445
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q P+A Y LI ++ G ++ A+ +W M + P+ YT ++ F K
Sbjct: 366 EQHGCFPNARTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMVGVFCKKLMF 425
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A ++ + M+ PP + F L++ L
Sbjct: 426 NQAESLIDKMLVENCPPNTVTFNTLIRSLC 455
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI +L ++ A+ V+ MR+ P+ +TY E++ G ++G+ DA+ +
Sbjct: 442 PNTVTFNTLIRSLCNCRRVGRALGVFHEMRRHGCPPNGRTYNELLHGLFREGNCGDALQM 501
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M + + ++ GL
Sbjct: 502 VIEMQNHGIELSLVTYNTVVSGLC 525
>gi|242092154|ref|XP_002436567.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
gi|241914790|gb|EER87934.1| hypothetical protein SORBIDRAFT_10g004910 [Sorghum bicolor]
Length = 492
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 94/195 (48%), Gaps = 13/195 (6%)
Query: 69 KKLIGKEALFVILGLKRFKD--DEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAV 126
+K+ ++AL VIL + K D+ K K + RLL ++ L E A+
Sbjct: 70 RKIASRKALSVILRREATKAVLDKRKPGKGTR----RLLPGTVLEALHERVAALRWDSAL 125
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+F+++R Q WY+P IY LI L + K +A +++++M E P+ ++YT ++
Sbjct: 126 KVFELMRDQVWYRPYIGIYIKLITMLGKCKKPEKAHELFQAMIDEGCAPNLESYTALVSA 185
Query: 187 FLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELF----- 240
+ + G +A N+ + M +P P+ + IL+K L H KVK ++
Sbjct: 186 YSRSGRFHEAFNLLDRMKDTPGCQPDVKTYSILIKSCL-HAYDFEKVKSLLTDMARAGIR 244
Query: 241 PEKHAYDPPEEIFGK 255
P Y+ + +GK
Sbjct: 245 PNTVTYNTLIDAYGK 259
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 71/130 (54%), Gaps = 8/130 (6%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L + E+ A++IF+ +++ PD ++Y ++ L ++ +++EA ++ +SM+ +
Sbjct: 674 LLSSLVKDEKIDFALQIFNELQESSLV-PDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQ 732
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK-----GLLPHP 226
++ PD TYT ++ G K G +A N++ M + P+ + + L+ G L H
Sbjct: 733 NILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHA 792
Query: 227 LL--RSKVKK 234
L+ R+ KK
Sbjct: 793 LIIFRAMAKK 802
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI +L + G++ EA +E+ + P+ Y+ +I F K G A+ +
Sbjct: 806 PDVVTYSSLIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALEL 865
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M + PP + + LL GL
Sbjct: 866 FEEMQRRQCPPNIVTYNNLLSGL 888
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L++ R +E A K+ D ++ Q+ PD + Y L+ L ++G++ EA ++ M
Sbjct: 709 MVNGLVKSNRVDE---ACKLVDSMKNQN-ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKM 764
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+E PD YT ++ K G + A+ I+ M K P+ + + L+ L
Sbjct: 765 TEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSL 818
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 12/128 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ ++++ P+ Y +L+ LA+ G++N A ++ E M K PD TY +I
Sbjct: 862 ALELFEEMQRRQC-PPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILI 920
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFP- 241
G K G +A + ++ M + P+ + F L++ L KV K E ELF
Sbjct: 921 DGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL-------GKVDKLLEACELFDS 973
Query: 242 -EKHAYDP 248
E+ Y+P
Sbjct: 974 MEEEGYNP 981
Score = 44.7 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ ++PD Y L+ L + GK++ A+ ++ +M K+ PD TY+ +I K+G
Sbjct: 766 EEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVE 825
Query: 195 DAMNIYEDMIKSPDPP 210
+A +E+ I P
Sbjct: 826 EAYYFFENSISKGCTP 841
Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y LI + + G ++ A++++E M++ P+ TY ++ G K G A +
Sbjct: 841 PNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKL 900
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M K P+ + + IL+ G+
Sbjct: 901 LEEMEKVGCVPDLVTYNILIDGV 923
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L + R EE A ++F + K++ PDA Y LI L + G+ + A +++ M
Sbjct: 363 LVNGLAKAGRLEE---ACEVF-VEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEM 418
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ L P+ +TY +I K G +A ++ D+ + P+ + L+ L
Sbjct: 419 KDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVL 472
Score = 40.8 bits (94), Expect = 0.51, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPDA ++ + + R+G+++ A + + M K + P T+T +I +K G+ +A
Sbjct: 284 QPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACK 343
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M P + + L+ GL
Sbjct: 344 FFNGMKNLRCSPNVVTYTTLVNGL 367
Score = 40.8 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y L+ A G ++EA+++ E M+K + P TYT ++ G K G +A+++ +M
Sbjct: 531 YNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREME 590
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
K P + + L+ S K+D EE
Sbjct: 591 KQGCEPSVVTYS---------SLMASFYKRDQEE 615
Score = 38.5 bits (88), Expect = 3.1, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 61/116 (52%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
++A + +++EE++ +FD ++RK D Y +I L ++ +++A+ V+
Sbjct: 604 LMASFYKRDQEEESL---SLFDEMVRKG--CVADVSTYSLVINCLCKSDDVDQALDVFGR 658
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M++E + P Y ++ +KD A+ I+ ++ +S P+ + I++ GL+
Sbjct: 659 MKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLV 714
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + + G ++EA ++ M+++ + PD T+T +I K +A +
Sbjct: 911 PDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACEL 970
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ M + P + + +L+
Sbjct: 971 FDSMEEEGYNPSVVTYNVLI 990
Score = 37.0 bits (84), Expect = 7.1, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 113 LIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
LIE L + ++ + A ++FD + +++ Y P Y LI L R GK++EA ++ M+ +
Sbjct: 954 LIESLGKVDKLLEACELFDSM-EEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVK 1012
Query: 172 DLFPDSQT 179
PD T
Sbjct: 1013 GCMPDGIT 1020
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K F + R + + +P+ +Y L+ A+ ++G +A +++ + + L P Q YT +I
Sbjct: 461 KAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTII 520
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K+G +A+ + +M PP+E+ + ++++GLL H
Sbjct: 521 NGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQH 561
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+ + A K+F ++ + +P+ + Y LI + +++EAMQ++ M + L P++ +Y
Sbjct: 353 DVVEARKLFHVMITKGC-KPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSY 411
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+I GF + G +A +++ +M + + P+ + ILL G L
Sbjct: 412 NTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYL 459
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + Q P+ Y LI + GK+ EA ++ +M PD TY+ ++
Sbjct: 392 AMQLFNEMIHQGL-TPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILL 450
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
GF K G A ++ M + P + + IL+ H + +S KD +LF E
Sbjct: 451 DGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILV-----HAMCKSGNHKDARKLFSE 503
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++FD + + QPD Y Y +I L + G+ A + + M + P+ TY+ +I
Sbjct: 182 AVELFDDMVAKGC-QPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLI 240
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+D +A++I+ M P+ + L++GL
Sbjct: 241 DSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLC 279
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + LI L + G+ +A+++++ M + PD TY +I G K G A A
Sbjct: 160 QPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAG 219
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+ + M ++ P + + L+ L R ++ + ++F A +IF
Sbjct: 220 LLKKMEEAGCQPNMVTYSTLID-----SLCRDRLVNEALDIFSYMKAKGISPDIF 269
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y LI +L R +NEA+ ++ M+ + + PD TYT +I+G K +A
Sbjct: 230 QPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASA 289
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ +M P+ + F +L+
Sbjct: 290 LLNEMTSLNIMPDIVTFNVLV 310
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF ++ + PD + Y LI L + + EA + M ++ PD T+ ++
Sbjct: 252 ALDIFSYMKAKGI-SPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
F K+G ++A+ + + M + P + + L+ G
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYG 347
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ + GK++EA+ V ++M + + P+ TY+ ++ G+ +A +
Sbjct: 301 PDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKL 360
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ MI P + IL+ G
Sbjct: 361 FHVMITKGCKPNIFSYNILING 382
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP +Y +I L + G ++EA++ + +M + PD +Y +IRG L+ + A+
Sbjct: 510 QPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALL 569
Query: 199 IYEDM 203
+ +M
Sbjct: 570 LVGEM 574
>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 418
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI P+++ + L+ G
Sbjct: 299 IDEMIMKGLXPDKITYTTLIDG 320
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDG 250
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + G + A + + M KE++ D YT +I G ++G DA +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368
Query: 200 YEDMIKSPDPPEELPFRILLK 220
+M+ PE + +++
Sbjct: 369 LREMLNVGLKPEIGTYTMIIN 389
>gi|242060055|ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
gi|241931148|gb|EES04293.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
Length = 574
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +I +R Q +QPD Y L+ L + GK+ +A +V + M E PD +T+T +I
Sbjct: 335 AAEIVQTMRDQG-HQPDNVTYSQLVYGLCKAGKLEDARKVLDEMEAEGCVPDLKTWTLLI 393
Query: 185 RGFLKDGSPADAMNIYEDMI-KSPDPPEELPFRILLKGLLPH 225
+G+ G A+ + +MI K D +L ++LKGL H
Sbjct: 394 QGYCSAGDVDRAVQYFTEMIEKGLDADADL-LDVILKGLCSH 434
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
AL GK +EA ++ ++MR + PD+ TY++++ G K G DA + ++M P
Sbjct: 325 ALTSNGKFDEAAEIVQTMRDQGHQPDNVTYSQLVYGLCKAGKLEDARKVLDEMEAEGCVP 384
Query: 211 EELPFRILLKG 221
+ + +L++G
Sbjct: 385 DLKTWTLLIQG 395
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 101 VLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
+L L + ++ VL EL +E I A+ F +Q Y + Y + L R + E
Sbjct: 170 LLPLTETTVITVLREL--REYPIKALAFFRWAEQQQGYTHSSVAYNAMARVLGREESVPE 227
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ + ++ + D TY ++ R F K +A+ +YE M+ P P + I+++
Sbjct: 228 FWDLIQEIKAAGMHVDIDTYLKLSRNFQKRHMVREAVELYELMMDGPFKPSQQDGPIIIR 287
Query: 221 ----GLLPHPLLRSKVKKDFEELFPEK 243
G P L ++V FE ++ K
Sbjct: 288 RISLGRSPDLELVNRVVNKFEAVWGVK 314
>gi|413952228|gb|AFW84877.1| hypothetical protein ZEAMMB73_259977 [Zea mays]
Length = 453
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 15/129 (11%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+++++++++ +PDA Y + L G++ +A + E M+KE PDS +Y E+IRG
Sbjct: 248 KVWEMMKERN-VEPDARSYNAKLRGLVSQGRVEDAAALIERMQKEGPKPDSVSYNELIRG 306
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ +G +A +Y++MIK+ P F L+PH F E HA
Sbjct: 307 YCNEGRLNEAKKVYDNMIKNGYAPNRGTFHT----LVPH----------FVEAGELDHAL 352
Query: 247 DPPEEIFGK 255
EIF +
Sbjct: 353 SCCHEIFTR 361
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + ++ K+ PD + L+ + ++ +VWE M++ ++ PD+++Y +
Sbjct: 211 AVDVITLMEKR-GITPDIISFNILLNGFYSNDRFDDVEKVWEMMKERNVEPDARSYNAKL 269
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
RG + G DA + E M K P+ + + L++G L ++ KK ++ + K+
Sbjct: 270 RGLVSQGRVEDAAALIERMQKEGPKPDSVSYNELIRGYCNEGRL-NEAKKVYDNMI--KN 326
Query: 245 AYDPPEEIFGKL 256
Y P F L
Sbjct: 327 GYAPNRGTFHTL 338
>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
inaguensis]
Length = 431
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKXMLSQSLLPDLITYNTLIYGLC 293
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A +
Sbjct: 245 PNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M P++ + L+ G L + K
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK 338
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXG 256
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKXMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLC 363
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD TYT +I F K G +
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M ++ P + + +L+ G
Sbjct: 411 KEMQRNGHVPSVVTYNVLMNG 431
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E AVK+FD++ ++ + PD Y LI + K+++AM ++E M +++ PD++
Sbjct: 323 QSEMDEAVKVFDMMVRKG-FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTK 381
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY ++ G G DA+ ++ +M+ P+ + + ILL L
Sbjct: 382 TYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSL 425
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G + A+++ SM + + PD YT +I
Sbjct: 154 ALHLFDKMIDEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSII 212
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KD +A N++ M+ P+ + L+ L
Sbjct: 213 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHAL 250
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 35/66 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P + Y +I L + G +NEA +++ M D PD TY + RGFL++ A+
Sbjct: 482 HPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQ 541
Query: 199 IYEDMI 204
+ E+M+
Sbjct: 542 LLEEML 547
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ +M+EA++V++ M ++ PD +YT +I G+ K AM
Sbjct: 307 EPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMY 366
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E+M + P+ + L+ GL
Sbjct: 367 LFEEMCRKEWIPDTKTYNTLMYGL 390
Score = 45.1 bits (105), Expect = 0.028, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD I+ ++ AL + GK+ EA ++ + M + + PD TYT ++ G +A+ +
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M++ P+ + + L+ G
Sbjct: 333 FDMMVRKGFAPDVISYTTLING 354
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ +L + + EAM + +++ +L PD Q Y +I G + G A ++
Sbjct: 413 PDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDL 472
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ ++ P + I++ GL LL ++ K F E+
Sbjct: 473 FSNLSSKGLHPSVWTYNIMIHGLCKRGLL-NEANKLFMEM 511
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + LI L GK+ EA+ +++ M E P+ TY +I G K G+ + A+
Sbjct: 131 HQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAI 190
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ M + P+ + + ++ L
Sbjct: 191 RLLRSMEQGNCQPDVVIYTSIIDSL 215
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + ++ A V + K PD T+T +IRG +G +A+++
Sbjct: 98 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHL 157
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ MI P + + L+ GL
Sbjct: 158 FDKMIDEGFQPNVVTYGTLINGL 180
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 22/98 (22%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ + +++W PD Y L+ L G++ +A+ ++ M PD TY+ ++
Sbjct: 364 AMYLFEEMCRKEWI-PDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILL 422
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K+ +AM + + + S P+ + I++ G+
Sbjct: 423 DSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGM 460
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y +I + R G++ A ++ ++ + L P TY +I G K G +A +
Sbjct: 448 PDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKL 507
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P+ + + +G L
Sbjct: 508 FMEMDGNDCSPDGCTYNTIARGFL 531
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q + A+K+F + KQ Y+P+ Y LI + M+ A +V+ +M+ +L P+
Sbjct: 567 KQHDLDSALKMFGQMMKQK-YKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNV 625
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +I GF K G P A + +E M+ + P + F L+ GL
Sbjct: 626 VTYTILIGGFSKTGKPEKAASFFELMLMNNCLPNDTTFHYLINGL 670
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPDAY+Y L+ R ++++A +++E + + + P Y +I+G K G DA++
Sbjct: 482 QPDAYMYATLVDGFIRNNELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVS 541
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
M + P+E ++ G + L S +K F ++ +K+
Sbjct: 542 YVNKMKIANHAPDEYTHSTVIDGYVKQHDLDSALKM-FGQMMKQKY 586
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++F+++ + P Y +I L + GKM +A+ M+ + PD
Sbjct: 497 RNNELDKATELFEVVMSKG-IDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDE 555
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
T++ VI G++K A+ ++ M+K P + + L+ G
Sbjct: 556 YTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGF 600
Score = 44.3 bits (103), Expect = 0.051, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY L+ L + G+ A + M +L PD+ Y ++ GF+++ A +
Sbjct: 448 PDAQIYNVLMSGLCKKGRFPAAKLLLSEMLDLNLQPDAYMYATLVDGFIRNNELDKATEL 507
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E ++ P + + +++KGL
Sbjct: 508 FEVVMSKGIDPGVVGYNVMIKGL 530
Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 85 RFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVK-IFDIIRKQDWYQPDAY 143
R K+ EE L++ K L K ++ +Q + ++A +F I D +PD
Sbjct: 360 RIKEAEEFLER-AKERTLLPNKFSYTPLMHAYCKQGDYVMASDMLFKIAETGD--KPDLV 416
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y I G+++ A+ V E M ++ +FPD+Q Y ++ G K G A + +M
Sbjct: 417 SYGAFIHGSVAGGEIDVALMVREKMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEM 476
Query: 204 IKSPDPPEELPFRILLKGLL 223
+ P+ + L+ G +
Sbjct: 477 LDLNLQPDAYMYATLVDGFI 496
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y + +I + ++ A++++ M K+ P+ YT +I GF K + A
Sbjct: 551 HAPDEYTHSTVIDGYVKQHDLDSALKMFGQMMKQKYKPNVVAYTSLINGFCKIADMSRAE 610
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
++ M P + + IL+ G
Sbjct: 611 KVFRAMQSFNLEPNVVTYTILIGGF 635
>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 131 IIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
I R DW +PD+Y Y L+ R G +EA + + M +E + P TY +++G +
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ DA+ I+ M+K P+E+ + LL GL
Sbjct: 450 VGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLF 483
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +P Y L+ L R G ++A+Q+W M K + PD Y+ ++ G K +
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFE 489
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A +++D++ + F ++ GL
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGL 517
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ ++ A +++ + ++ LFP+ TY +I G+ K G+ A +
Sbjct: 782 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ MI+ P + + L+ GL H
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKH 867
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y I L +TGK+++A + + + + PD+ TY +I G+ G+ +A +
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M++ P + + L+ GL
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGL 794
Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + E A ++F + ++ + P+ Y LI + G M+ A ++ + M +
Sbjct: 789 ALINGLCKSENVDRAQRLFHKLHQKGLF-PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE 847
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
E + P TY+ +I G K G +M + MIK+ + + + L++G
Sbjct: 848 EGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQG 898
Score = 37.7 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ +I L + GKM EA ++++ M+ PD TY +I G+ K + A + M
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569
Query: 205 KSPDPPEELPFRILLKGLL 223
+ P + L+ GL
Sbjct: 570 REXISPSIEMYNSLISGLF 588
>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
venustus]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 4/112 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+EA +++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAY 246
IY+ ++ P+ + + L+ GL L+ + +EL P+K Y
Sbjct: 263 IYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITY 314
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q + PD Y LI L + G + +A + + M ++L PD TYT +
Sbjct: 259 LAMEIYKQLLSQG-FSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ R G ++E ++ +M + PD
Sbjct: 148 KEGEMRLAQSVFDAITK--WGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A ++ +M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDG 250
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ + + PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKELKPDKITYTTLIDG 320
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ M+ P+ + +++
Sbjct: 368 MLRGMLSVGLKPDNGTYTMIIN 389
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y LI L R K N+A W+ M+K+ L P+ TYT +I G K G+ DA ++
Sbjct: 739 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSL 798
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E + P+ F L++G+
Sbjct: 799 FERFKANGGTPDAASFNALIEGM 821
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y LI L + G+ E ++ +M+++ D++ Y V+ GF K G A
Sbjct: 562 FLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAY 621
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ E+M PP + ++ GL
Sbjct: 622 EVLEEMKVKRVPPTVATYGSIIDGL 646
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y + L+ AL + ++NEA+ ++SM++ P++ TY+ +I G + A
Sbjct: 704 PNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVF 763
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M K P + + ++ GL
Sbjct: 764 WQEMQKQGLVPNVVTYTTMIAGL 786
Score = 37.7 bits (86), Expect = 4.7, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ + DA Y ++ ++GK+++A +V E M+ + + P TY +I G K
Sbjct: 593 KQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRL 652
Query: 194 ADAMNIYED 202
+A ++E+
Sbjct: 653 DEAYMLFEE 661
Score = 37.0 bits (84), Expect = 8.1, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ ++ L + K A +++E+ + P+S TY +I G K G+ DA +
Sbjct: 424 PNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRL 483
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+E+M+ + + + L++ H K+D ++F E
Sbjct: 484 FENMLDTGHNANPVVYTSLIRNFFMH-----GRKEDGHKIFKE 521
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y LI L GK EA+Q M ++D P++ TY +I KDG ADA+
Sbjct: 314 RPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNIIINKLCKDGLVADAVE 373
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
I E M K P+ + + ILL GL
Sbjct: 374 IVELMKKRRTRPDNITYNILLGGLCA 399
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI A + GKM+EAM + M+ L D YT +IRGF G +++++++
Sbjct: 218 LIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 208 DPPEELPFRILLKGLL 223
D P + + L++G
Sbjct: 278 DSPCAITYNTLIRGFC 293
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + Y L+ +L + G +++A +++E M++++ FPD ++ +I G LK G A +
Sbjct: 526 QPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAES 585
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M ++ P+ + L+ L
Sbjct: 586 LLVGMSRAGLSPDLFTYSKLINRFL 610
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+R D Y +I +TG +N A + MR +L P Y ++ K+
Sbjct: 490 IVRNSDTYTA-------MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKE 542
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
GS A ++E+M + + P+ + F I++ G L ++S
Sbjct: 543 GSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKS 582
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I+D++ ++ D L+ + + G +N+AM++W+ + + +S TYT +I
Sbjct: 443 ALDIYDLLVEK-LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMI 501
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL----- 239
GF K G A + M S P + LL L L + + FEE+
Sbjct: 502 DGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL-DQAWRLFEEMQRDNN 560
Query: 240 FPEKHAYD 247
FP+ +++
Sbjct: 561 FPDVVSFN 568
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTE 182
AV+I ++++K+ +PD Y L+ L G ++EA ++ M K+ + PD +Y
Sbjct: 371 AVEIVELMKKR-RTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNA 429
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I G K+ A++IY+ +++ + + ILL L
Sbjct: 430 LIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTL 470
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D +Y LI G+++ +++ + + P + TY +IRGF K G +A
Sbjct: 244 EADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASE 303
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+E MI+ P + L+ GL
Sbjct: 304 IFEFMIERGVRPNVYTYTGLIDGLC 328
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A Y +I L + G + +A+++ E M+K PD+ TY ++ G G +A
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408
Query: 199 IYEDMIK--SPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ M+K S P+ + + L+ GL L + D +L EK
Sbjct: 409 LLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQAL--DIYDLLVEK 453
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
D +L L ++ A ++F+ +++ + + PD + +I + G + A +
Sbjct: 531 DYNCLLSSLCKEGSLDQAWRLFEEMQRDNNF-PDVVSFNIMIDGSLKAGDIKSAESLLVG 589
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
M + L PD TY+++I FLK G +A++ ++ M+ S P+
Sbjct: 590 MSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633
>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 131 IIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
I R DW +PD+Y Y L+ R G +EA + + M +E + P TY +++G +
Sbjct: 390 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 449
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ DA+ I+ M+K P+E+ + LL GL
Sbjct: 450 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLF 483
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +P Y L+ L R G ++A+Q+W M K + PD Y+ ++ G K +
Sbjct: 430 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFE 489
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A +++D++ + F ++ GL
Sbjct: 490 GASTLWKDILARGFTKSRITFNTMISGL 517
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ ++ A +++ + ++ LFP+ TY +I G+ K G+ A +
Sbjct: 782 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 841
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ MI+ P + + L+ GL H
Sbjct: 842 KDKMIEEGISPSVVTYSALINGLCKH 867
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y I L +TGK+++A + + + + PD+ TY +I G+ G+ +A +
Sbjct: 712 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 771
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M++ P + + L+ GL
Sbjct: 772 RDEMLRRGLVPNIVTYNALINGL 794
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + E A ++F + ++ + P+ Y LI + G M+ A ++ + M +
Sbjct: 789 ALINGLCKSENVDRAQRLFHKLHQKGLF-PNVVTYNTLIDGYCKIGNMDAAFKLKDKMIE 847
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
E + P TY+ +I G K G +M + MIK+ + + + L++G +
Sbjct: 848 EGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYI 900
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ +I L + GKM EA ++++ M+ PD TY +I G+ K + A + M
Sbjct: 510 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 569
Query: 205 KSPDPPEELPFRILLKGLL 223
+ P P + L+ GL
Sbjct: 570 REPISPSIEMYNSLISGLF 588
>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
Length = 839
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 131 IIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
I R DW +PD+Y Y L+ R G +EA + + M +E + P TY +++G +
Sbjct: 356 ITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCR 415
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ DA+ I+ M+K P+E+ + LL GL
Sbjct: 416 VGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLF 449
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +P Y L+ L R G ++A+Q+W M K + PD Y+ ++ G K +
Sbjct: 396 QEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFE 455
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A +++D++ + F ++ GL
Sbjct: 456 GASTLWKDILARGFTKSRITFNTMISGL 483
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y I L +TGK+++A + + + + PD+ TY +I G+ G+ +A +
Sbjct: 678 PNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRL 737
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M++ P + + L+ GL
Sbjct: 738 RDEMLRRGLVPNIVTYNALINGL 760
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ +I L + GKM EA ++++ M+ PD TY +I G+ K + A + M
Sbjct: 476 FNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAME 535
Query: 205 KSPDPPEELPFRILLKGLL 223
+ P P + L+ GL
Sbjct: 536 REPISPSIEMYNSLISGLF 554
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ ++ A +++ + ++ LFP+ TY +I G+ K G+ A +
Sbjct: 748 PNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKL 807
Query: 200 YEDMIKSPDPP 210
+ MI+ P
Sbjct: 808 KDKMIEEGISP 818
>gi|302792401|ref|XP_002977966.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
gi|300153987|gb|EFJ20623.1| hypothetical protein SELMODRAFT_417819 [Selaginella moellendorffii]
Length = 234
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 3/136 (2%)
Query: 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK 134
E + V +K+ K D ++L+ ++T V RLL+ +++++ R +E LA IF +IRK
Sbjct: 52 ETVSVATMMKKAKGDPDRLKSVLRTSVSRLLREELMSLFWVFVRAKEMDLAELIFGLIRK 111
Query: 135 QDWYQPDAYIYKDLIIALAR---TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ WY+P A +Y LI A + + M Q+ + +E L P+ ++ I+ +
Sbjct: 112 ESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTPIQACVSST 171
Query: 192 SPADAMNIYEDMIKSP 207
M +Y+ M S
Sbjct: 172 DFDACMTLYDRMHAST 187
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y LI L R K N+A W+ M+K+ L P+ TYT +I G K G+ DA ++
Sbjct: 733 PNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSL 792
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E + P+ F L++G+
Sbjct: 793 FERFKTNGGIPDSASFNALIEGM 815
Score = 43.9 bits (102), Expect = 0.070, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ Y LI L + GK+++A +++E M + YT +IR F G D I
Sbjct: 453 PNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKEDGHKI 512
Query: 200 YEDMIKSPDPPE 211
Y++MI+ P+
Sbjct: 513 YKEMIRRGGRPD 524
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y + L+ AL +T +++EA+ ++SM++ P++ TY+ +I G + A
Sbjct: 698 PNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVF 757
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M K P + + ++ GL
Sbjct: 758 WQEMQKQGLIPNVVTYTTMISGL 780
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 31/63 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I LA+ G + +A ++E + PDS ++ +I G P +A +
Sbjct: 768 PNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQV 827
Query: 200 YED 202
+E+
Sbjct: 828 FEE 830
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L ++ + A+ +FD+++K +P+ Y +I L G++NEA ++ + M
Sbjct: 356 SILTCLGKKRKVDEALTLFDVMKKDA--KPNISTYNIIIDMLCMAGRVNEAYKIRDEMEL 413
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
LFP+ + ++ K +A I+E + P + + L+ GL
Sbjct: 414 AGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGL 465
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y LI L + G+ E ++++M ++ D++ Y V+ G K G A
Sbjct: 556 FLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLCKSGKVDKAY 615
Query: 198 NIYEDM 203
+ E+M
Sbjct: 616 EVLEEM 621
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L + ++ EA +++ES + P+S TY +I G K G DA ++E M+ +
Sbjct: 430 LCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKGKIDDAYRLFEKMLDAGHDAN 489
Query: 212 ELPFRILLKGLLPH 225
+ + L++ H
Sbjct: 490 PIIYTSLIRNFFMH 503
Score = 37.4 bits (85), Expect = 6.8, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
IF + +Q + DA Y ++ L ++GK+++A +V E M+ + + P TY ++ G
Sbjct: 582 IFQAMSQQG-FALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGL 640
Query: 188 LKDGSPADAMNIYED 202
K +A ++E+
Sbjct: 641 AKIDRLDEAYMLFEE 655
Score = 36.6 bits (83), Expect = 9.8, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + + + + G++ + ++E M+ PD ++Y+ +I G K G + N
Sbjct: 522 RPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSN 581
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I++ M + + + ++ GL KV K +E L
Sbjct: 582 IFQAMSQQGFALDARAYNAVVDGLCK----SGKVDKAYEVL 618
>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+EA ++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQGFLPDLITYNTLIYGLC 287
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + GK++ AM++++ M + PD TY +I G + G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E+MI P+++ + L+ G
Sbjct: 299 VEEMIMKGLKPDKITYTTLIDG 320
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q + PD Y LI L R G + +A + E M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQG-FLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G + + MI+ +E+ + L+ GL
Sbjct: 318 IDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLC 357
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ R G ++E ++ +M + PD
Sbjct: 148 KEGEMRLAQMVFDAITK--WSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A + +M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDG 250
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L R G+ +A ++ M L PD+ TYT ++ F K G A +
Sbjct: 345 DEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLL 404
Query: 201 EDMIKSPDPP 210
+M ++ P
Sbjct: 405 REMQRNGPVP 414
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 40/86 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y P Y + L+ + G+M A V++++ K L P ++ ++ G+++ G +
Sbjct: 132 YPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGF 191
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ + +L+ GL
Sbjct: 192 RLKSAMHATGVQPDVYTYSVLINGLC 217
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +++ LI A AR G M++++ ++E M K+ + PD T++ VI F + G DAM
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 385
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ MI + PP+ + L++G
Sbjct: 386 FNHMIDTGVPPDTAVYSCLIQG 407
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + L+ G M EA+ + +SM + PD TY ++ G+ K G DA+
Sbjct: 466 RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALT 525
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ DM+ + + I+L GL
Sbjct: 526 LFRDMLHKRVTLTSVSYNIILHGL 549
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F+ + KQ PD + +I A R G++++AM+ + M + PD+ Y+ +I+G
Sbjct: 350 MFEDMTKQ-GVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQ 408
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPF 215
A + DM+ PP + F
Sbjct: 409 CNRRDLVKAKELISDMLSKGIPPPCIKF 436
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 79 VILGLKRFKDDEEK---LQKFIKTHV-LRLLKMDIV--AVLIELERQE--ETILAVKIFD 130
V+ GL R +E L+K +V +L +IV A+ RQE E A+ +
Sbjct: 580 VLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQEAKELFAAISTYG 639
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
++ P Y+ +I L + +A ++ SM K PDS+ E+IR L
Sbjct: 640 LV-------PTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNK 692
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
G A A N + K PE +L+ + R +K L PEK+ +
Sbjct: 693 GEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIK-----LLPEKYRF 743
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAME 250
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
IY+ M+ P+ + + L+ GL + L+
Sbjct: 251 IYKRMLSQSLLPDLITYNTLIYGLCKNGDLK 281
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K+G A ++
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDL 286
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M P++ + L+ G L + K
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFK 320
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 142 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSV 199
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 200 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 238
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 247 LAMEIYKRMLSQSLL-PDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTL 305
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 306 IDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLC 345
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD TYT +I F K G
Sbjct: 327 QENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVW 386
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M ++ P + + +L+ G
Sbjct: 387 KGSKLLKEMQRNGHAPSVVTYNVLMNG 413
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 51/94 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI R G++++A +V++ MR + P+ +Y+ +I GF K+G A+ +
Sbjct: 313 PDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEV 372
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+E+M S P+ + IL+ G + S +K
Sbjct: 373 FEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIK 406
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y LI + G++++A++V+E M+ + PD +Y+ +I GF + G A+
Sbjct: 348 PNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAIKF 407
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E+M + P + L+KG
Sbjct: 408 WEEMTSNNFSPSAFNYCSLIKG 429
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + K PD Y Y LI R G M+ A++ WE M + P + Y +I
Sbjct: 369 ALEVFEEM-KNSGILPDVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLI 427
Query: 185 RGFLKDGSPADAMNIYEDMIK 205
+G+ K A+A+ + M K
Sbjct: 428 KGYYKSKQFANALKEFRIMQK 448
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 88 DDEEKLQKFIK-THVLRLLKMDIVAVLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIY 145
+ E+ + FIK T V + +LI L + + +A ++F +++ Y PD Y
Sbjct: 540 NSEKAVMLFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGMKESRVY-PDQIAY 598
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
L+ TG+M A +++ M +E P+ TYT I +LK A +YE M +
Sbjct: 599 TSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKE 658
Query: 206 SPDPPEELPFRILL 219
P+++ + +L+
Sbjct: 659 RGVYPDQILYTMLI 672
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 7/114 (6%)
Query: 139 QP-DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
QP + + + +I L + G ++EA +V++ M+ + PD +Y+ +I GF + G A
Sbjct: 276 QPLNNHCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQAS 335
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKHAY 246
++++M S P + IL+ G + K + FEE+ P+ ++Y
Sbjct: 336 EVFKEMRNSGILPNIYSYSILIDGFCKEGRV-DKALEVFEEMKNSGILPDVYSY 388
Score = 43.5 bits (101), Expect = 0.090, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEV 183
A K+++ ++++ Y PD +Y LI A TG+MN A +++ M++E P+ YT +
Sbjct: 649 AHKLYEKMKERGVY-PDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCL 707
Query: 184 IRGFLKDGSPADAMNIYEDM 203
I ++K A +YE+M
Sbjct: 708 INSYIKLNKRDQAEKLYEEM 727
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 51/87 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y L+ A+ ++G + +A +++ + + L P+ Q YT +I G K+G +A+
Sbjct: 7 KPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALE 66
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ +M + PP+E + ++++G L H
Sbjct: 67 AFRNMEEDGCPPDEFSYNVIIRGFLQH 93
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ IY +I L + G ++EA++ + +M ++ PD +Y +IRGFL+ + A++
Sbjct: 42 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVH 101
Query: 199 IYEDM 203
+ +M
Sbjct: 102 LIGEM 106
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMR-KEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + ++ ++++ ++ + D PD TYT +I GF K G +A N
Sbjct: 211 PDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASN 270
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E+M++S P + F +L+ G
Sbjct: 271 LFEEMMRSGIQPNVITFNVLIDGF 294
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + E ++F I+ + PD Y +I ++GKM EA ++E M + + P
Sbjct: 223 LCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQP 282
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ T+ +I GF K G+ A+A +Y M + + F L+ G
Sbjct: 283 NVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDG 328
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+K +++++ ++ P Y Y LI AL + ++NEA ++ + P Y VI
Sbjct: 338 GLKFWNVMKTRN-VSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVI 396
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF K G+ + I ++M + P+++ F IL+ G
Sbjct: 397 DGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIG 433
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 51/113 (45%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AVLI +E + + F K P ++Y +I + G ++E + + M +
Sbjct: 358 AVLINALCKENRLNEARDFLGQIKNSSIIPKPFMYNPVIDGFCKAGNVDEGNVILKEMEE 417
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD T+T +I G G +A+NI+ M+ + P+ + L+ LL
Sbjct: 418 KRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLL 470
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 44/83 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y +L+ L + +++EA+ +++ PD+ T+ +IRG + G A ++
Sbjct: 142 NSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVF 201
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+DM P+ + + L+ GL
Sbjct: 202 KDMESFGCLPDVVTYNTLINGLC 224
>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g20300, mitochondrial; Flags: Precursor
gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
contains multiple PPR PF|01535 repeats [Arabidopsis
thaliana]
gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 537
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L R+ A FD ++ D ++PD +Y +L+ R G+++EA +V++ M+
Sbjct: 227 VISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLA 284
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ P+ TY+ VI + G + A +++ DM+ S P + F L++
Sbjct: 285 GIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMR 333
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 125 AVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV F+ R +D+ PD + +I L+R + +EA ++S+ K+ PD YT +
Sbjct: 205 AVHCFN--RMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNL 261
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+RG+ + G ++A ++++M + P + I++ L
Sbjct: 262 VRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALC 301
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + +L+ + G+ + +QV+ M+K PD+ TY +I +D + +A+ +
Sbjct: 323 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKV 382
Query: 200 YEDMIK 205
MIK
Sbjct: 383 LNTMIK 388
>gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Glycine max]
Length = 631
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K PD Y Y L+ + R +M+EA ++ +M + PD ++ ++
Sbjct: 489 AINLFNEMKKLGC-TPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDINSHNIIL 547
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G + G P A+ ++ M S P+ + F +L G L L + K +E+ +
Sbjct: 548 NGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTIL-GCLSRAGLFEEAAKLMQEMSSKGF 606
Query: 245 AYD 247
YD
Sbjct: 607 QYD 609
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L R + A+++FD + K++ QP A IY L+ + GK+ EA+ + + M
Sbjct: 230 LISAFAKLNRDDS---AIRLFDEM-KENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEM 285
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
R TYTE+IRG K G DA Y++M+K P+ ++L L + L
Sbjct: 286 RARRCLLTVFTYTELIRGLGKSGRVEDAYMTYKNMLKDGCKPD-----VVLMNNLINILG 340
Query: 229 RSKVKKDFEELFPE 242
RS +D +LF E
Sbjct: 341 RSNHLRDAIKLFDE 354
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ A +Y +I + G++NEA+ ++ M+K PD Y ++ G ++
Sbjct: 462 KENCGCSSARVYAVMIKHFGKCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERM 521
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A +++ M ++ P+ I+L GL
Sbjct: 522 DEAFSLFRTMEENGCTPDINSHNIILNGL 550
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALART-GKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+K+FD ++ + P+ Y +I +L ++EA +E M+K+ + P S TY+ +
Sbjct: 348 AIKLFDEMKLLNC-APNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSIL 406
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
I G+ K A+ + E+M + PP + L+ L
Sbjct: 407 IDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINTL 445
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 47/84 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD YI+ LI A A+ G ++EAM + MR++ L P+ TY V+ + G DAM+
Sbjct: 343 QPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAMS 402
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ +I P + FR L+ GL
Sbjct: 403 QFDRLISEGLTPNGVVFRTLIHGL 426
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 131 IIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
I RK +D +PD Y L++ L + G+ EA +V++SM K+ PDS Y ++ G+
Sbjct: 263 IFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYA 322
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G + + M+++ P+ F IL+ H ++
Sbjct: 323 TEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMV 362
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IFD++ + D Q D Y LI GK++EA ++ E M + + P+ TY +I
Sbjct: 470 AKNIFDLMVRVD-VQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTII 528
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K+G DA +++ M P + + +L GL
Sbjct: 529 NGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLF 567
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 5/118 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L R G++++A +++ M + + P+ TY ++ G+ G P +A+ I
Sbjct: 204 PDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGI 263
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS-KVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M + P+ + + L+ L + RS + +K F+ + + H P I+G L
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNG--RSMEARKVFDSMVKKGH--KPDSSIYGTL 317
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 108 DIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
D+V+ V+ L R+ + A +FD + Q P+ Y L+ +GK EA+ +
Sbjct: 205 DVVSYTTVINGLLREGQLDKAYCLFDEMLDQG-MSPNCITYNCLLHGYCSSGKPKEAIGI 263
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ M ++ + PD TY ++ K+G +A +++ M+K P+ + LL G
Sbjct: 264 FRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHG 320
Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ L + G + A +++ M + D+ D TYT +I G+ DG +A +
Sbjct: 449 PNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKL 508
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M+ P E+ + ++ G
Sbjct: 509 LEGMVLDGVKPNEVTYNTIING 530
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 6/131 (4%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L L ++ I + K+FD++ PD Y LI GKM+ AM++ M
Sbjct: 292 TILDSLCKEGRVIESKKLFDLL-GHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVS 350
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PDS TY+ +I G+ K DA+ ++++M + P+ + + I+L H L R+
Sbjct: 351 VGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIIL-----HGLFRT 405
Query: 231 KVKKDFEELFP 241
+ +EL+
Sbjct: 406 RRTAAAKELYA 416
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 94 QKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIR--KQDWYQPDAYIYKDLIIA 151
+K + V R LK DI L V++ D++ Q+ Q D +++ LI A
Sbjct: 132 RKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICA 191
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ K++E + V+ MR++ L P++ Y VI G K G DAM +E MI P
Sbjct: 192 YTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPN 251
Query: 212 ELPFRILLKGLLPH 225
+ + L+ L +
Sbjct: 252 VVVYTSLIHALCTY 265
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K I RK D +PD Y L+ L + GK EA ++++SM K L PD TY ++
Sbjct: 95 KAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLL 154
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ G+ + ++ M+++ + F IL+
Sbjct: 155 HGYASKGALVEMHDLLALMVQNGMQLDHHVFNILI 189
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA Y +I AL++ M+ AM+V M + P+ TY ++ G+ G A+
Sbjct: 43 SPDAVTYNSIIAALSKAQAMDRAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIG 98
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 99 IFRKMCSDGIEPDVVTYNSLMDYLCKNGKC-TEARKIFDSMV--KRGLKPDITTYGTL 153
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y ++ +G+ +A+ ++ M + + PD TY ++ K+G +A I
Sbjct: 75 PNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKI 134
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+K P+ + LL G
Sbjct: 135 FDSMVKRGLKPDITTYGTLLHG 156
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD+ Y LI + +M +A+ +++ M + PD TY ++ G + A A
Sbjct: 354 KPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKE 413
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+Y + +S E + I+L
Sbjct: 414 LYARITESGTQLELSTYNIIL 434
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +R++ QPD + Y L+ L +TGK++ A++V+E D PD Y+ +I
Sbjct: 131 AYELLDEMRERGL-QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 189
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A ++E M ++ P+ + F L+ GL
Sbjct: 190 AGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLC 228
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 6/117 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+K+F+ D PD Y LI L +TG+++EA +++E MR+ PD T+T +
Sbjct: 165 MALKVFEDNSNGDC-PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTAL 223
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ G K +A + E M P + + L+ GL +R D +E+F
Sbjct: 224 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR-----DAQEVF 275
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y L+ + G+M EA +V + M K P+ TYT +I F + G P A
Sbjct: 424 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYK 483
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E+M+ + P + +R L+ G
Sbjct: 484 LLEEMVGNGVQPNVITYRSLIGGFC 508
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
RQ + A K+F + ++ P+ Y L+ L R G M+EA ++ + MR+ L PD
Sbjct: 89 RQTKVDTAYKLFRQM-VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 147
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y ++ G K G A+ ++ED PP+ + + L+ GL L K
Sbjct: 148 FSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACK 203
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++A L + R +E A K+F+ +R+ +PD + L+ L + ++ EA QV E+M
Sbjct: 188 LIAGLCKTGRLDE---ACKLFEKMRENSC-EPDVVTFTALMDGLCKGDRLQEAQQVLETM 243
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TY+ +I G K G DA +++ MI P + + L+ G
Sbjct: 244 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +TG+ EA +++ M+ + PD TY+ +I GF K A +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++DM+K P+ + F L++G L+ D E L E A D +++
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLV-----DDAERLLEEMVASDCSPDVY 428
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ P+ + Y LI + K++ A + + M++ L P+ TY+ VI GF +
Sbjct: 34 KKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKV 93
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEE--LFPEKHAYD 247
A ++ M+++ P + + LL GL + L+ + + E L P+K +YD
Sbjct: 94 DTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYD 151
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ +LER + +A +FD + KQ PD + L+ G +++A ++ E M
Sbjct: 363 LIGGFCKLERID---MARTLFDDMLKQAVL-PDVVTFSTLVEGYCNAGLVDDAERLLEEM 418
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
D PD TYT ++ GF K G +A + + M K P + + L+
Sbjct: 419 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 469
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L +TG++ +A +V++ M + P+ TY +I GF A+ +
Sbjct: 250 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 309
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E+M + P+ + + L+ GL
Sbjct: 310 MEEMTATGCLPDIITYNTLIDGLC 333
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD Y LI + +++ A +++ M K+ + PD T++ ++ G+ G
Sbjct: 349 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 408
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E+M+ S P+ + L+ G
Sbjct: 409 DDAERLLEEMVASDCSPDVYTYTSLVDGFC 438
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+ + + + + + D + Y+ ++ L RTG+M+ A+++ E++++ P Y +I
Sbjct: 516 ARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALI 575
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
RG + AM + E+M S
Sbjct: 576 RGLCQGKELGKAMEVLEEMTLS 597
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI T ++ A+ + E M PD TY +I G K G +A
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 343
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ DM P+ + + L+ G
Sbjct: 344 LFGDMKAKFCNPDVITYSCLIGGFC 368
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ QP+ Y+ LI TG + EA ++ E + R E+ D Y ++ G + G +
Sbjct: 491 NGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMS 550
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF------PEKHAYDP 248
A+ + E + +S PP + L++GL L K + EE+ P AY+
Sbjct: 551 AALELLEAIKQSGTPPRHDIYVALIRGLCQGKEL-GKAMEVLEEMTLSRKSRPNAEAYEA 609
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y LI A R GK A ++ E M + P+ TY +I GF G +A
Sbjct: 459 QPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARK 518
Query: 199 IYEDMIKSPDPPEEL-PFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249
+ E + + + ++ +R+++ GL ++ E L K + PP
Sbjct: 519 MLERLERDENCKADMFAYRVMMDGLCRT----GRMSAALELLEAIKQSGTPP 566
>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+EA ++++ M ++ L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ ++ P+ + + L+ G
Sbjct: 263 IYKQILSQGLSPDLITYNTLIYGFC 287
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + GK++ AM++++ + + L PD TY +I GF K G ++
Sbjct: 239 PNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ I Q PD Y LI + G + + + + M + L PD TYT +
Sbjct: 259 LAMEIYKQILSQGL-SPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLC 357
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M PD
Sbjct: 148 KEGEIRLAQLVFDAITK--WGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A ++++M++ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDG 250
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M +E++ D YT +I G K+G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ P+ + I++
Sbjct: 368 MLREMLSVGLKPDSGTYTIVMN 389
>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 418
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI P++ + L+ G
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDG 320
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hederifolia]
Length = 431
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQCLLPDLITYNTLIYGL 292
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G +NE ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 256
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKFTYXTLIDGCC 328
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI + G ++ A + + M +E++ D YT +I G ++G DA
Sbjct: 314 KPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEK 373
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ P++ + +++
Sbjct: 374 MLREMLSVGLKPDDRTYTMIIN 395
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TY +
Sbjct: 265 LAMEIYKQMLSQ-CLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 363
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD +TYT +I F K G +
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI P++ + L+ G
Sbjct: 299 IDEMIMKGLKPDKFTYTTLIDG 320
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K F + +D PD Y +I + G M EA +++ M + L PDS T+TE+I
Sbjct: 813 ASKFFYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELI 871
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G DA ++ MI++ P + + L+ GL
Sbjct: 872 NGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 910
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ K+ +P++YIY +I L R K+ EA + + M ++ + PD+ YT +I GF K G
Sbjct: 749 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + +M P+ L + ++ G
Sbjct: 809 DIRAASKFFYEMHSRDITPDVLTYTAIISGFC 840
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y ++ L ++G + EA+++ L D+ TYT ++ + K G A
Sbjct: 931 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 990
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I ++M+ P + F +L+ G H +L
Sbjct: 991 ILKEMLGKGLQPTIVTFNVLMNGFCLHGML 1020
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI + G + A + + M D+ PD TYT +I GF + G +A +
Sbjct: 792 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 851
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M P+ + F L+ G
Sbjct: 852 FHEMFCKGLEPDSVTFTELING 873
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD+ + +LI + G M +A +V M + P+ TYT +I G K+G A
Sbjct: 861 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 920
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M K P + ++ GL + VK
Sbjct: 921 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 955
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD Y ++ R G++++ ++ E M+++ L P+S Y +I + A+A
Sbjct: 720 YTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAE 779
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
+ +MI+ P+ + + L+ G +R+ K F E H+ D
Sbjct: 780 EAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASK-----FFYEMHSRD 824
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 13/196 (6%)
Query: 68 GKKLIGKEALFVILGLKRFKD--DEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILA 125
+K+ ++AL VIL + K D+ K K + RLL ++ L E A
Sbjct: 88 NRKIASRKALSVILRREATKAVLDKRKPGKGTR----RLLPRTVLEALHERITALRWDSA 143
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+K+FD++R Q WY+P IY LI L + + A +++++M E P+ ++YT ++
Sbjct: 144 LKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGCAPNLESYTALVS 203
Query: 186 GFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELF---- 240
+ + G A ++ E M +P P+ + IL+K L H +VK E++
Sbjct: 204 AYSRSGRFDRAFSLLEQMKATPGCRPDVQTYSILIKSCL-HAYDFERVKYLMEDMARAGI 262
Query: 241 -PEKHAYDPPEEIFGK 255
P Y+ + +GK
Sbjct: 263 RPNVVTYNTLIDAYGK 278
>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 537
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L R+ A FD ++ D ++PD +Y +L+ R G+++EA +V++ M+
Sbjct: 227 VISNLSRKRRASEAQSFFDSLK--DRFEPDVIVYTNLVRGWCRAGEISEAEKVFKDMKLA 284
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ P+ TY+ VI + G + A +++ DM+ S P + F L++
Sbjct: 285 GIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMR 333
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 125 AVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV F+ R +D+ PD + +I L+R + +EA ++S+ K+ PD YT +
Sbjct: 205 AVHCFN--RMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSL-KDRFEPDVIVYTNL 261
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+RG+ + G ++A +++DM + P + I++ L
Sbjct: 262 VRGWCRAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALC 301
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + +L+ + G+ + +QV+ M+K PD+ TY +I +D + +A+ +
Sbjct: 323 PNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIETHCRDENLENAVKV 382
Query: 200 YEDMIK 205
MIK
Sbjct: 383 LNTMIK 388
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L + EE A+ F +++ P+ Y Y LI L R K N+A W+ M+K
Sbjct: 708 SLLDALVKAEEINEALVCFQSMKEMKC-PPNTYTYSILINGLCRVQKYNKAFVFWQDMQK 766
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ L P+ TYT +I G K G+ DA +++E + P+ F L++G+
Sbjct: 767 QGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGM 818
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
IF+ IR + PD Y LI L + G+ E ++ +M+++ D++ Y V+ GF
Sbjct: 550 IFEDIRSYG-FLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGF 608
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A I E+M + P + ++ GL
Sbjct: 609 CKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL 643
Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y + L+ AL + ++NEA+ ++SM++ P++ TY+ +I G + A
Sbjct: 701 PNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVF 760
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++DM K P + + ++ GL
Sbjct: 761 WQDMQKQGLVPNVVTYTTMISGL 783
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIF+ Q PD Y LI L + G+++EA +++E M + YT +I
Sbjct: 442 AYKIFESA-SQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLI 500
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
R F G D I++++I+ P+
Sbjct: 501 RNFFIHGRKEDGHKIFKELIRRGCKPD 527
Score = 38.9 bits (89), Expect = 2.4, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R EE A +I D + + P+ ++ L + K+ EA +++ES + PD
Sbjct: 403 RVEE---AYRILDEMEHASLF-PNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDC 458
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
TY +I G K G +A ++E M+ + + + L++ H K+D
Sbjct: 459 VTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVYTSLIRNFFIH-----GRKEDGH 513
Query: 238 ELFPE 242
++F E
Sbjct: 514 KIFKE 518
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L ++ + A+ +F++++K +P++ Y +I L G++ EA ++ + M
Sbjct: 359 SILTCLGKKRKVDEALSLFEVMKKDA--EPNSSTYNIIIDMLCLGGRVEEAYRILDEMEH 416
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
LFP+ T ++ K +A I+E + P+ + + L+ GL +
Sbjct: 417 ASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQV-D 475
Query: 231 KVKKDFEELFPEKHAYDP 248
+ + FE++ H +P
Sbjct: 476 EAYRLFEKMLDAGHNANP 493
Score = 36.6 bits (83), Expect = 9.6, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ A L+ R ++ +LAV + ++ ++P Y LI ALA + A+++ M
Sbjct: 150 LAAALVRARRLDDAVLAVAVMRRLK----FRPAFSAYTVLIGALAEARRPERALELLRQM 205
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
++ +T ++R ++G ADA+ + +++ S P+ + + + +
Sbjct: 206 QEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCI 256
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/104 (33%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A KIF+ + +Q PD Y +I + G MNEA++ +MRK PD
Sbjct: 551 RNESLDEARKIFEFM-EQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDE 609
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TYT +I G+ K G+ + A+++ DM+K P + + L+ G
Sbjct: 610 FTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLING 653
Score = 50.1 bits (118), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y+Y LI R ++EA +++E M ++ + PD Y +I+G+ + G +A+
Sbjct: 536 HPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVE 595
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
M K P+E + L+ G
Sbjct: 596 CMSTMRKVGRIPDEFTYTTLIGG 618
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + LI L G+++EA+ V E M L PD+ Y +I G K A
Sbjct: 465 HTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAAR 524
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
N+ E+M++ P++ + L+ G + + L + +K FE F E+ P
Sbjct: 525 NLIEEMLEQNVHPDKYVYTTLIDGFIRNESL-DEARKIFE--FMEQKGIHP 572
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY LI L + + A + E M ++++ PD YT +I GF+++ S +A I
Sbjct: 502 PDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKI 561
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+E M + P+ + + ++KG ++ V+
Sbjct: 562 FEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVE 595
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA + LI L + G++ EA ++ + +L P+ +YT +I GF G A N+
Sbjct: 397 PDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNL 456
Query: 200 YEDMIKSPDPPEELPFRILLKGLL------PHPLLRSKVKKDFEELFPEKHAYD 247
+M++ P+ + F L+ GL+ L+R K+ +L P+ + Y+
Sbjct: 457 LVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAA--RQLLPDANIYN 508
Score = 41.2 bits (95), Expect = 0.45, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 36/83 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L R G + + + MR+ L P+ Q Y VI K S + A+ +
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + F L+ GL
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGL 409
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y LI + G + A ++ SM + LFP+ TYT +I K A
Sbjct: 641 QPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAM 700
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E M+ + P + L+ GL
Sbjct: 701 YFEYMLLNQCSPNDYTLHSLVTGL 724
>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI P+++ + L+ G
Sbjct: 299 IDEMIMKGLKPDKITYTTLIDG 320
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 418
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKLMLSQSLSPDLITYNTLIYGLC 287
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ ++ Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKLMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 800
Score = 59.3 bits (142), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
++ +D P+ +Y I M EA++++E M KE + D+ TYT +I GF KD
Sbjct: 620 VLMLKDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKD 679
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ A+ +Y +M+ + P+ + F L GL
Sbjct: 680 GNVTFALKLYSEMVAKGNIPDHITFTALTHGL 711
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ + +R + +PD Y LI + G M+ A+QV M K+ L P+ Y
Sbjct: 579 LALKMLNDVRCKG-LRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSF 637
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
I G+ +A+ +YE MIK + + L+ G
Sbjct: 638 ITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGF 676
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 9/145 (6%)
Query: 80 ILGLKRFKDDEEKL---QKFIKTHVLRLLKMDIVAVLIE-LERQEETILAVKIF-DIIRK 134
I G K K EE L +K IK + L LI+ + A+K++ +++ K
Sbjct: 638 ITGYKNLKMMEEALRLYEKMIKEGID--LDTATYTTLIDGFSKDGNVTFALKLYSEMVAK 695
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ PD + L L R G +++A ++ + M + D+ P+ Y +I G+L++G
Sbjct: 696 GNI--PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQ 753
Query: 195 DAMNIYEDMIKSPDPPEELPFRILL 219
+A ++++M++ P++ + IL+
Sbjct: 754 EAFRLHDEMLERKIMPDDTTYDILV 778
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ+ + Y Y LI L G++ E ++ + E P + TY +I GF+K G
Sbjct: 483 KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMM 542
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
A +Y+ M PP + + + G
Sbjct: 543 GSAFAVYQQMCAKGIPPNIVTYTSFIDG 570
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+ Y LI L + K+ EA+ +WE M + + P TY ++ + +G +A+ +
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
Y +M P + + L+KG
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKG 465
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI ++ G + A++++ M + PD T+T + G ++G DA +
Sbjct: 665 DTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLL 724
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE----ELFPEKHAYD 247
++M + P L + +L+ G L + L+ + E ++ P+ YD
Sbjct: 725 DEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYD 775
Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
++ +A+ ++E ++ L P TYT +IRG ++G P A + M P F
Sbjct: 297 EVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFN 356
Query: 217 ILLKGLLPHPLLRSKVKKDFEELFPE 242
+++KG LL K+ KD LF E
Sbjct: 357 MVIKG-----LLNDKLWKDAVSLFKE 377
Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E A+ IF+ + D P Y LI G +A ++ MR L P +
Sbjct: 295 QREVRKALDIFEETLR-DGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTN 353
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ VI+G L D DA++++++M S P+ + IL+ L
Sbjct: 354 EFNMVIKGLLNDKLWKDAVSLFKEMADS-GIPDAFTYNILIHWL 396
>gi|162460162|ref|NP_001106062.1| pentatricopeptide repeat 5 [Zea mays]
gi|154520281|gb|ABS82814.1| pentatricopeptide repeat protein 5 [Zea mays]
gi|413924537|gb|AFW64469.1| pentatricopeptide repeat 5 [Zea mays]
Length = 499
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 86/183 (46%), Gaps = 11/183 (6%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPD 141
L+R +E+L + HV R+++ + +L E L R++ + + +F ++KQ WY D
Sbjct: 65 LRRTAGGKERLVPVLDRHV-RVVRTEHCFLLFEELGRRDAWLQCLDVFRWMQKQRWYVAD 123
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL----KDGSPADAM 197
IY LI + R G++ AM ++ MR PD+ Y +I L K + A A+
Sbjct: 124 NGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKTKALAKAL 183
Query: 198 NIYEDM-IKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEE--LFPEKHAYDPPEEI 252
+E M P + + ILL+ + + KD +E + P+ + Y+ +
Sbjct: 184 GYFEKMKCIERCQPTIVTYNILLRAFAQAGDTKQVDMLFKDLDESVVSPDVYTYNGVLDA 243
Query: 253 FGK 255
+GK
Sbjct: 244 YGK 246
>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
alba]
Length = 413
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 250
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 251 IYKQMLSQSLLPDLITYNTLIYGLC 275
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A +
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGL 286
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 287 IDEMSMKGLKPDKFTYTTLIDGCC 310
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G +N+A + + M + L PD TYT +
Sbjct: 247 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTL 305
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + ++ GL
Sbjct: 306 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLC 345
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 142 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 199
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 200 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 238
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI + G ++ A + + M +E++ D YT +I G ++G P DA
Sbjct: 296 KPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEK 355
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ P+ + +++
Sbjct: 356 MLREMLSVGLKPDTGTYTMIIN 377
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y +I L + G+ +A ++ M L PD+ TYT +I F K G
Sbjct: 327 QENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVW 386
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M ++ P + +L+ G
Sbjct: 387 KGSKLLKEMQRNGHVPSVXTYNVLMNG 413
>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
barbata]
Length = 429
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAME 266
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 267 IYKQMLSQSLLPDLITYNTLIYGLC 291
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G +NE ++ +M + PD TY+
Sbjct: 158 IAQSVFDAIAK--WGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSV 215
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 216 LINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDG 254
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 243 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 302
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M +++ + L+ G
Sbjct: 303 IDEMSMKGLKXDKITYTTLIDGCC 326
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD+ TYT +I F K G
Sbjct: 343 QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVW 402
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ +DM ++ P + + +L+ G
Sbjct: 403 KGSKLLKDMQRNGHAPSVVTYNVLMNG 429
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L D TYT +
Sbjct: 263 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTL 321
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 322 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLC 361
>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 418
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + +M+EA ++ M L P+ T+T +I G K+G AM+
Sbjct: 203 QPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMD 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M+ P+ + + L+ GL
Sbjct: 263 IYRQMLNQGFSPDVVTYNTLIYGLC 287
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ I+ + Q + PD Y LI L + G + +A + + M ++ L PD TYT +
Sbjct: 259 LAMDIYRQMLNQG-FSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + E MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLC 357
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +MR + PD
Sbjct: 148 KEGEMRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ +A ++ +M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDG 250
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM ++ M + PD TY +I G K G A +
Sbjct: 239 PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M + P+++ + L+ G
Sbjct: 299 LDEMSRKGLKPDKITYTTLIDG 320
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A ++ E M KE + D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M++ P++ + +++
Sbjct: 368 MLREMLRVGLKPDDETYTMIMN 389
Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y LI L + G+ +A ++ M + L PD +TYT ++ F K G A +
Sbjct: 345 DDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELL 404
Query: 201 EDMIKSPDPP 210
+M ++ P
Sbjct: 405 REMQRNGRVP 414
>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 418
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI P+++ + L+ G
Sbjct: 299 IDEMIMKGLKPDKITYTTLIDG 320
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 418
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++MI P+++ + L+ G
Sbjct: 299 IDEMIMKGLXPDKITYTTLIDG 320
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDG 250
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + G + A + + M KE++ D YT +I G ++G DA +
Sbjct: 309 PDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKM 368
Query: 200 YEDMIKSPDPPEELPFRILLK 220
+M+ PE + +++
Sbjct: 369 LREMLNVGLKPEIGTYTMIIN 389
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ + K QPD IY LI A + G M+ A+++ E M+KE + P ++ + +I
Sbjct: 498 AFSIFEEMLKSG-LQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPII 556
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELF 240
GF G A+NI + M +S P + + L+ GL+ + V K +
Sbjct: 557 EGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQVERAVSVLNKMSIAGIT 616
Query: 241 PEKHAY 246
P +H Y
Sbjct: 617 PNEHTY 622
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+D P+ + Y I A + G M A +V E M L P+ +TYT +I+G+ K P
Sbjct: 716 KEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMADVGLKPNLKTYTTLIKGWAKASLP 775
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ +E+M + P+E + L+ LL
Sbjct: 776 DRALKSFEEMKLAGLKPDEAAYHCLVTSLL 805
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I + ++K+ QP ++ +I A G M A+ + + MR+ P TY +I
Sbjct: 533 AIRILEKMQKER-MQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALI 591
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G +K A+++ M + P E + I+++G
Sbjct: 592 HGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRG 628
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ ++Y LI AR G + EA + + M+++ + P+ TYT I K G A +
Sbjct: 688 NTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVI 747
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
E+M P + L+KG LP L+S + L P++ AY
Sbjct: 748 EEMADVGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKLAGLKPDEAAY 797
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+ +A+ + + M + +++TY+ +I GF+
Sbjct: 436 KECCFTPSIISYGCLINLYIKIGKVTKAIAISKEMESYGIKHNNKTYSMLISGFIHLHDF 495
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAYDPP 249
A+A +I+E+M+KS P+ + +L++ + + K E + P A+ P
Sbjct: 496 ANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPI 555
Query: 250 EEIFG 254
E F
Sbjct: 556 IEGFA 560
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D YIY+ L+ A ++G+M A+ V M + + ++ Y +I G+ + G +A ++
Sbjct: 653 DVYIYETLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLM 712
Query: 201 EDMIKSPDPPE 211
+ M + PP
Sbjct: 713 KQMKEDGVPPN 723
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + I A A G +++AM ++ MR + PD TY VI
Sbjct: 347 LFDLMLG-DGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 405
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
+ G DAM + MI P++ + L++G H +L DF
Sbjct: 406 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGIDF 454
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y +LI + TG+ EA++V++ MR+ + PD T + ++ K G +A ++
Sbjct: 253 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 312
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P+ + I+L G
Sbjct: 313 FDTMAMKGQNPDVFSYNIMLNG 334
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 12/117 (10%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + PD Y VI GF K+G A
Sbjct: 146 PDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKAC 205
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYD 247
+++++M++ PP+ + + ++ L LR V K + P Y+
Sbjct: 206 DLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNK---RVLPNNWTYN 259
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+ PD L+ +L + GK+ EA V+++M + PD +Y ++
Sbjct: 274 AVRVFKEMRRHSIL-PDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 332
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G+ G D ++++ M+ P+ F + +K +L
Sbjct: 333 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGML 376
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 99/225 (44%), Gaps = 21/225 (9%)
Query: 12 PILASIVLQNLTKNPSKNFSFLAFK---PKSPIVDFVAHEPILGLRQYHDGRPRGSLWR- 67
P+L +++ K +K F F+ K P + + + H ++ R G G + R
Sbjct: 158 PVLRAMLRAGDVKGAAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRA---GAAMGVMRRM 214
Query: 68 -------GKKLIGKEALFVILGLKRFK--DDEEKLQKFIKTHVLRLLKMDIVAVLIELER 118
G G V+ GL R D K+ + ++ + L + V+ +
Sbjct: 215 EREGVVPGVMTYGA----VVDGLVRCGRVKDAWKVAEEMERNGLARNEFVYSTVITGFCK 270
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
E A+K+++ + +P+ +Y +I LA GKM EA ++ M P+
Sbjct: 271 SGEIDCALKVWEAMVASP-VRPNVVLYSAMIGGLANFGKMTEAELLFREMIDSKCAPNII 329
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I+G+ K G + A++++E+MI + P + + IL+ GL
Sbjct: 330 TYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLC 374
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+A Y LI L G++ +AM VW+ M PD+ YT +I+G G +
Sbjct: 360 MPNAVSYSILINGLCNVGRLKDAMMVWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLR 419
Query: 199 IYEDMIKSPDP-PEELPFRILLKGLL 223
++ DM+ S P+ + + +LL GLL
Sbjct: 420 LFYDMLASGHADPDVISYNVLLDGLL 445
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 2/110 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I + G + A+ VWE M P++ +Y+ +I G G DAM
Sbjct: 325 APNIITYGSMIQGYFKIGDTSRALSVWEEMIGAGCMPNAVSYSILINGLCNVGRLKDAMM 384
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+++ M+ P+ + + ++KGL ++ ++ F ++ HA DP
Sbjct: 385 VWKHMLDRGCAPDTIAYTSMIKGLCVSGMVDGGLRL-FYDMLASGHA-DP 432
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y ++ ALA G++++A+ + M + + ++ + V+R L+ G A
Sbjct: 116 APDKFTYSTVVSALADAGRVDDAVALVHEMVADGVVA-AEAFNPVLRAMLRAGDVKGAAK 174
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++E M P + +L+ GLL
Sbjct: 175 LFEFMQLKGCVPTAATYNVLVHGLL 199
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++R Q WY+P IY LI L + + +A Q++++M E P+ Q+YT ++
Sbjct: 124 ALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGCAPNLQSYTALV 183
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELF--- 240
+ + G +A ++ + M +P P+ + IL+K L H KVK ++
Sbjct: 184 STYSRSGRFREAFDLLDRMKDTPGCQPDVQTYSILIKSCL-HAYDFEKVKSLLADMARAG 242
Query: 241 --PEKHAYDPPEEIFGK 255
P Y+ + +GK
Sbjct: 243 IPPNTVTYNTLIDAYGK 259
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I +Q PD + LI AL + GK++EA +++ M + +FP + TY +I GF K
Sbjct: 136 DMIERQ--INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCK 193
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
DA + + M P+ + F L+ G ++K + E+F E H
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLING-----YCKAKRVDNGMEIFCEMH 243
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 79 VILGLKRFKDDEEKLQ---KFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDII 132
+I GL + D E L K +TH+ K +V A++ L + I A +F +
Sbjct: 47 IINGLCKMGDTESALNLLSKMEETHI----KAHVVIYNAIIDRLCKDGHHIHAQNLFTEM 102
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
+ + PD Y +I + R+G+ +A Q+ M + + PD T++ +I +K+G
Sbjct: 103 HDKGIF-PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGK 161
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++A IY DM++ P + + ++ G
Sbjct: 162 VSEAEEIYGDMLRRGIFPTTITYNSMIDGFC 192
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI + +++ M+++ M + + ++ TYT +I GF + G A +
Sbjct: 213 SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQD 272
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ MI S P + F+ +L L LR
Sbjct: 273 LLNVMISSGVAPNYITFQSMLASLCSKKELR 303
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 85 RFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIF-DIIRKQDWYQP 140
R+ D E+ L+ I+ R + D+V A++ L ++ + A +I+ D++R+ + P
Sbjct: 126 RWTDAEQLLRDMIE----RQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIF--P 179
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
Y +I + ++N+A ++ +SM + PD T++ +I G+ K + M I+
Sbjct: 180 TTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF 239
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+M + + + L+ G
Sbjct: 240 CEMHRRGIVANTVTYTTLIHGFC 262
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 116 LERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L R+ + AV + D++ K Y PDA Y L+ +L R K+ EA ++ M+ +
Sbjct: 251 LCRKSQVNGAVDLLEDMLNK--GYVPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCN 308
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
PD Y VI GF ++G DA + EDM + P + +R L+ GL + + K
Sbjct: 309 PDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMF-DEAKS 367
Query: 235 DFEEL 239
EE+
Sbjct: 368 HLEEM 372
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 129 FDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ + Y P+ Y LI A G+++ A ++ M K D+ PD ++Y +++
Sbjct: 191 FDLFKDAHTYDVFPNTKSYNILIRAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQA 250
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ A+++ EDM+ P+ L + LL L LR K
Sbjct: 251 LCRKSQVNGAVDLLEDMLNKGYVPDALSYTTLLNSLCRKKKLREAYK 297
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF I K D ++ L I ++ + A +++ D+FP++++Y +I
Sbjct: 154 ALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILI 213
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
R F +G + A +++ M K P+ +RIL++ L
Sbjct: 214 RAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALC 252
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I+ R G+ +A +V E M P+ +Y ++ G G +A +
Sbjct: 308 NPDIIHYNTVILGFCREGRAMDACKVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEAKS 367
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
E+M ++KG PH + + + K F + + A EE+
Sbjct: 368 HLEEM--------------MMKGFSPHFAVSNALIKGFCNVGKIEEACGVVEELL 408
>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 323
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I +Q PD + LI AL + GK++EA +++ M + +FP + TY +I GF K
Sbjct: 136 DMIERQ--INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCK 193
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
DA + + M P+ + F L+ G ++K + E+F E H
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLING-----YCKAKRVDNGMEIFCEMH 243
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 71/151 (47%), Gaps = 11/151 (7%)
Query: 79 VILGLKRFKDDEEKLQ---KFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDII 132
+I GL + D E L K +TH+ K +V A++ L + I A +F +
Sbjct: 47 IINGLCKMGDTESALNLLSKMEETHI----KAHVVIYNAIIDRLCKDGHHIHAQNLFTEM 102
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
+ + PD Y +I + R+G+ +A Q+ M + + PD T++ +I +K+G
Sbjct: 103 HDKGIF-PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGK 161
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++A IY DM++ P + + ++ G
Sbjct: 162 VSEAEEIYGDMLRRGIFPTTITYNSMIDGFC 192
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI + +++ M+++ M + + ++ TYT +I GF + G A +
Sbjct: 213 SPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQD 272
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ MI S P + F+ +L L LR
Sbjct: 273 LLNVMISSGVAPNYITFQSMLASLCSKKELR 303
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 10/143 (6%)
Query: 85 RFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIF-DIIRKQDWYQP 140
R+ D E+ L+ I+ R + D+V A++ L ++ + A +I+ D++R+ + P
Sbjct: 126 RWTDAEQLLRDMIE----RQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIF--P 179
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
Y +I + ++N+A ++ +SM + PD T++ +I G+ K + M I+
Sbjct: 180 TTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIF 239
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+M + + + L+ G
Sbjct: 240 CEMHRRGIVANTVTYTTLIHGFC 262
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +R++ QPD + Y L+ L +TGK++ A++V+E D PD Y+ +I
Sbjct: 250 AYELLDEMRERGL-QPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A ++E M ++ P+ + F L+ GL
Sbjct: 309 AGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLC 347
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y L+ + G+M EA +V + M K P+ TYT +I F + G P A
Sbjct: 543 SPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYR 602
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E+M+ + P + +R L+ G
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFC 627
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
RQ + A K+F + ++ P+ Y L+ L R G M+EA ++ + MR+ L PD
Sbjct: 208 RQTKVDTAYKLFRQM-VENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 266
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y ++ G K G A+ ++ED PP+ + + L+ GL L K
Sbjct: 267 FSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACK 322
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++A L + R +E A K+F+ +R+ +PD + L+ L + ++ EA QV E+M
Sbjct: 307 LIAGLCKAGRLDE---ACKLFEKMRENSC-EPDVVTFTALMDGLCKGDRLQEAQQVLETM 362
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TY+ +I G K G DA +++ MI P + + L+ G
Sbjct: 363 EDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 417
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+K+F+ D PD Y LI L + G+++EA +++E MR+ PD T+T +
Sbjct: 284 MALKVFEDNSNGDC-PPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTAL 342
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ G K +A + E M P + + L+ GL +R D +E+F
Sbjct: 343 MDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR-----DAQEVF 394
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +TG+ EA +++ M+ + PD TY+ +I GF K A +
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++DM+K P+ + F L++G L+ D E L E A D +++
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLV-----DDAERLLEEMVASDCSPDVY 547
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + K++ A + + M++ L P+ TY+ VI GF + A +
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKL 218
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEE--LFPEKHAYD 247
+ M+++ P + + LL GL + L+ + + E L P+K +YD
Sbjct: 219 FRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYD 270
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L +TG++ +A +V++ M + P+ TY +I GF A+ +
Sbjct: 369 PNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLL 428
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E+M + P+ + + L+ GL
Sbjct: 429 MEEMTATGCLPDIITYNTLIDGLC 452
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ +LER + +A +FD + KQ PD + L+ G +++A ++ E M
Sbjct: 482 LIGGFCKLERID---MARTLFDDMLKQ-AVLPDVVTFSTLVEGYCNAGLVDDAERLLEEM 537
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
D PD TYT ++ GF K G +A + + M K P + + L+
Sbjct: 538 VASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALI 588
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KI + + + + + D + Y+ ++ L RTG+M+ A+++ E++++ P Y +I
Sbjct: 635 ARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALI 694
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
RG + AM + E+M S
Sbjct: 695 RGLCQGKELGKAMEVLEEMTLS 716
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD Y LI + +++ A +++ M K+ + PD T++ ++ G+ G
Sbjct: 468 KAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 527
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E+M+ S P+ + L+ G
Sbjct: 528 DDAERLLEEMVASDCSPDVYTYTSLVDGFC 557
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI T ++ A+ + E M PD TY +I G K G +A
Sbjct: 403 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 462
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ DM P+ + + L+ G
Sbjct: 463 LFGDMKAKFCNPDVITYSCLIGGFC 487
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y LI A R GK A ++ E M + P+ TY +I GF G +A
Sbjct: 578 QPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARK 637
Query: 199 IYEDMIKSPDPPEEL-PFRILLKGLL 223
I E + + + ++ +R+++ GL
Sbjct: 638 ILERLERDENCKADMFAYRVMMDGLC 663
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
QP+ Y+ LI TG + EA ++ E + R E+ D Y ++ G + G + A+
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ E + +S PP + L++GL
Sbjct: 673 ELLEAIKQSGTPPRHDIYVALIRGLC 698
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ F KQ + + Y Y L AL R +++E + ++ + P+ TY VI
Sbjct: 7 ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G K G A + E+M +S P+ + ++ L
Sbjct: 67 QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALC 105
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 132 IRKQDW---YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
I K W P+ + Y +I L ++G +++A ++ E MR+ PD+ Y VI
Sbjct: 46 ILKNGWPPGITPNVFTYAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALC 105
Query: 189 KDGSPADAMNIYEDM 203
K + A A++ + M
Sbjct: 106 KARNTAKALDYFRSM 120
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I+ L +TGK+ EA +V M E + PD YT +I GF K G+ + A
Sbjct: 320 KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYR 379
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M K P+ + + ++ GL
Sbjct: 380 LFDEMQKRKISPDFITYTAVICGLC 404
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD ++K+ PD Y +I L +TG++ EA +++ M + L PD TYT +I
Sbjct: 377 AYRLFDEMQKRK-ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 435
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFE 237
G+ K+G +A +++ M++ P + + L GL + LL +K E
Sbjct: 436 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 495
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI + G ++ A ++++ M+K + PD TYT VI G + G +A +
Sbjct: 356 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL 415
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M+ P+E+ + L+ G
Sbjct: 416 FHEMVCKRLEPDEVTYTALIDG 437
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y Y L+ L + G +++A+++ + M PD+ TYT ++ + K A +
Sbjct: 497 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 556
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLL 228
M+ P + F +L+ G +L
Sbjct: 557 RQMLDRELQPTVVTFNVLMNGFCMSGML 584
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 110 VAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
AV+ L + + A K+F +++ K+ +PD Y LI + GKM EA + M
Sbjct: 397 TAVICGLCQTGRVMEADKLFHEMVCKR--LEPDEVTYTALIDGYCKEGKMKEAFSLHNQM 454
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ L P+ TYT + G K G A + +M + + L+ GL +
Sbjct: 455 LQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNI 514
Query: 229 RSKVK--KDFE 237
VK KD E
Sbjct: 515 DQAVKLMKDME 525
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G++ +++ E M+ + L P+ TY VI K G A+A +
Sbjct: 286 PDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERV 345
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+MI P+ + + L+ G
Sbjct: 346 LREMISEGIAPDGVIYTTLIDGFC 369
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+ DI+ + P + Y LI + +++EA + M +++L PD+ TY+ ++
Sbjct: 356 AQKVLDIMVDKGC-APVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLM 414
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+G + G P +A+N++++M S P+ + + LL GL H L +K
Sbjct: 415 QGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALK 463
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV +F+ ++R+ +QPD Y +I L ++G + A+Q+ M ++ P+ YT +
Sbjct: 181 AVGLFNEMVRR--GHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTI 238
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
I KD DAM++ +M+ PP+ + + +L G
Sbjct: 239 IDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCS 279
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 1/103 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + G+ EA+ +++ M L PD TY+ ++ G K G +A+ +
Sbjct: 405 PDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKL 464
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M +S P+ + + IL++G+ L K+ F +LF +
Sbjct: 465 LKSMQESKIEPDIVLYNILIEGMFIAGKLEV-AKELFSKLFAD 506
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ G +NEA ++ M ++ P++ T+T ++ G K+G ++A +
Sbjct: 265 PDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCV 324
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E M K P + L+ G
Sbjct: 325 FEAMTKKGAEPNAYTYNALMDG 346
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
V+ L + T +A+++ +RK + +P+ Y +I +L + +N+AM + M
Sbjct: 202 TVINGLCKSGNTSMALQL---LRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEM 258
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ PD TY+ ++ GF G +A ++ +M+ P + F IL+ GL ++
Sbjct: 259 VDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMV 318
Query: 229 RSKVKKDFEELF-----PEKHAYDP 248
S+ + FE + P + Y+
Sbjct: 319 -SEARCVFEAMTKKGAEPNAYTYNA 342
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D QP Y +I L + G +EA +++ M + P+S +Y +I+GFL++ +
Sbjct: 506 DGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSST 565
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
A+ + ++M+ + F++LL
Sbjct: 566 AIRLIDEMVGKRFSADSSTFQMLL 589
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R + A+ + + K QPDA + LI G++ EA+ ++ M + P
Sbjct: 137 LCRLNHVVFAISVLGKMFKL-GIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQP 195
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +Y+ VI G K G+ + A+ + M + P + + ++ L L+
Sbjct: 196 DVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVN 249
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y LI + GK+ A +++ + + + P +TYT +I+G LK+G +A
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ M P + ++++G L +
Sbjct: 534 LFRKMEDDGFLPNSCSYNVIIQGFLQN 560
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + G ++EA+++ +SM++ + PD Y +I G G A +
Sbjct: 440 PDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKEL 499
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ + P + I++KGLL L
Sbjct: 500 FSKLFADGIQPTIRTYTIMIKGLLKEGL 527
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ L + G ++EA V+E+M K+ P++ TY ++ G+ + +A +
Sbjct: 300 PNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKV 359
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M+ P + IL+ G
Sbjct: 360 LDIMVDKGCAPVVHSYNILING 381
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I+ L +TGK+ EA +V M E + PD YT +I GF K G+ + A
Sbjct: 220 KPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYR 279
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M K P+ + + ++ GL
Sbjct: 280 LFDEMQKRKISPDFITYTAVICGLC 304
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD ++K+ PD Y +I L +TG++ EA +++ M + L PD TYT +I
Sbjct: 277 AYRLFDEMQKRK-ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFE 237
G+ K+G +A +++ M++ P + + L GL + LL +K E
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 395
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI + G ++ A ++++ M+K + PD TYT VI G + G +A +
Sbjct: 256 PDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKL 315
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M+ P+E+ + L+ G
Sbjct: 316 FHEMVCKRLEPDEVTYTALIDG 337
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 40/88 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y Y L+ L + G +++A+++ + M PD+ TYT ++ + K A +
Sbjct: 397 NIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELL 456
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLL 228
M+ P + F +L+ G +L
Sbjct: 457 RQMLDRELQPTVVTFNVLMNGFCMSGML 484
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 110 VAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
AV+ L + + A K+F +++ K+ +PD Y LI + GKM EA + M
Sbjct: 297 TAVICGLCQTGRVMEADKLFHEMVCKR--LEPDEVTYTALIDGYCKEGKMKEAFSLHNQM 354
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ L P+ TYT + G K G A + +M + + L+ GL +
Sbjct: 355 LQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNI 414
Query: 229 RSKVK--KDFE 237
VK KD E
Sbjct: 415 DQAVKLMKDME 425
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + P TY VI
Sbjct: 51 LFDLMLG-DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 109
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 110 CRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAK 154
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +P Y +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 83 AMIIFNEMRDH-GVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLI 141
Query: 185 RGFLKDGS 192
+GF GS
Sbjct: 142 QGFCTHGS 149
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 105 LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+++DIV +++ L + + A IFD+ + PDA +Y L+ GKM +A
Sbjct: 165 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH-PDAVVYNMLMDGYCLVGKMEKA 223
Query: 162 MQVWESMRKEDLFPD-------------SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
++V+++M + P+ + Y +I G + G A + +M +S
Sbjct: 224 LRVFDAMVSAGIEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 283
Query: 209 PPEELPFRILLKGLLPH 225
+ + I+L+GL +
Sbjct: 284 AMNKCTYSIVLRGLFKN 300
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 39/78 (50%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
+L + GK+ E V+++M + PD +YT ++ G+ G D ++++ M+ P
Sbjct: 3 SLCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 62
Query: 211 EELPFRILLKGLLPHPLL 228
+ F +L+K +L
Sbjct: 63 DIYTFNVLIKAYANCGML 80
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D PD Y LI L +G+ ++A ++ M K +++PD T+ +I +K+G
Sbjct: 213 EKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++A YE+MI+ P+ + + +L+ GL + L D EE+F
Sbjct: 273 SEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRL------------------DEAEEMF 314
Query: 254 G 254
G
Sbjct: 315 G 315
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P+ IY +I L ++ +++ A+ + M K+ + PD TY +I G G +DA
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDAT 241
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M K P+ F L+ + + S+ ++ +EE+ + + DP
Sbjct: 242 RMVSCMTKREIYPDVFTFNALIDACVKEGRV-SEAEEFYEEMI--RRSLDP 289
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y L+ L GK+ +A+ + M+K + D TY +IRG K G ADA +
Sbjct: 393 HPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWD 452
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
IY + P+ + ++ GL L R
Sbjct: 453 IYCSLNCQGLMPDIWTYTTMMLGLYKKGLRR 483
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + K++ Y PD + + LI A + G+++EA + +E M + L PD TY+ +I
Sbjct: 240 ATRMVSCMTKREIY-PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLI 298
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G +A ++ M+ P+ + + IL+ G
Sbjct: 299 YGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILING 335
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI ++ K+ M+++ M + + ++ TYT +I+G+ + G A I
Sbjct: 324 PDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEI 383
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M+ P + + +LL GL +
Sbjct: 384 FRRMVFCGVHPNIITYNVLLHGLCDN 409
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +++EA +++ M + FPD TY+ +I G+ K M +
Sbjct: 289 PDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKL 348
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + IL++G
Sbjct: 349 FCEMSQRGVVRNTVTYTILIQG 370
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI R GK+N A +++ M + P+ TY ++ G +G A+ I DM
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQ 423
Query: 205 KSPDPPEELPFRILLKGLL 223
K+ + + + I+++G+
Sbjct: 424 KNGMDADIVTYNIIIRGMC 442
>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
Length = 500
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K+F+ +R Y P+ + LI L RTG++ +A++V+ SM + P+ TYT +I
Sbjct: 239 GCKLFEAMRAA-GYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLI 297
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G + A ++E M ++ PP+ + + L+ G
Sbjct: 298 SGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAG 334
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 7/124 (5%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ Y+PD Y LI LA+ GK++E++++ M P Q Y+ ++R K
Sbjct: 73 ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVD 132
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDPPEEI 252
A +++++MI+ P+ L F L+ GL KV KD E F + KH P +
Sbjct: 133 HASSLFDEMIRGGHHPDRLMFYELILGLCQ----AGKV-KDASERFKQMPKHGCQPNVPV 187
Query: 253 FGKL 256
+ L
Sbjct: 188 YNVL 191
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K PD Y L+ A+ + ++ E +++E+MR P+ T++ +I G + G
Sbjct: 212 KSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGEL 271
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE-KHAYDPPEEI 252
A+ ++ M+++ P + + L+ G L R++ ELF + A PP+ +
Sbjct: 272 EKALEVFGSMLEAGCKPNKYTYTTLISG-----LCRAEKVIQARELFEKMTQACIPPDAV 326
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E A+++F + + +P+ Y Y LI L R K+ +A +++E M + + P
Sbjct: 265 LCRTGELEKALEVFGSMLEAGC-KPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPP 323
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
D+ Y +I G+ K GS +A +Y +M P + F L+ G
Sbjct: 324 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 372
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ Y+ LI L+R K++EA++V++ MR++ D + + G K G+ A ++
Sbjct: 395 DSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAVF 454
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E KS P FRIL + L+
Sbjct: 455 EATRKSGAVPNPETFRILSESLI 477
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 79 VILGLKRFKDDEEKLQKF--IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQD 136
+I GL R + E+ L+ F + + K ++ L R E+ I A ++F+ + Q
Sbjct: 261 LIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKM-TQA 319
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSPAD 195
PDA Y LI + G M+EA +++ M L P T+ +I GF K G
Sbjct: 320 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGR 379
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A + +M + +RIL+ GL
Sbjct: 380 ANELVAEMGTKGLAADSCTYRILIAGL 406
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ + Y +I +L + K E+ +V E M PD + V++GF + + A +Y
Sbjct: 9 NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+ M++S P+ + + IL+ GL
Sbjct: 69 QHMVESGYKPDNVSYHILIHGL 90
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A +FD +IR + PD ++ +LI+ L + GK+ +A + ++ M K P+ Y +
Sbjct: 134 ASSLFDEMIR--GGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVL 191
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G G A ++ +M P+ + + LL +
Sbjct: 192 LHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVC 231
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + + ++ AR+ M +A +V++ M + PD+ +Y +I G K G +++
Sbjct: 42 NPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLK 101
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I +M+ P + L++ L
Sbjct: 102 ILSEMVMRGQTPSMQAYSSLVRAL 125
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ +Y L+ L +G++ +A ++ M+ PD TY ++ K +
Sbjct: 182 QPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCK 241
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++E M + P + F L+ GL
Sbjct: 242 LFEAMRAAGYVPNVITFSTLIHGLC 266
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
++R Q P Y L+ ALA+ +++ A +++ M + PD + E+I G +
Sbjct: 107 VMRGQ---TPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQA 163
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
G DA ++ M K P + +LL GL L + F E+ + H+ P
Sbjct: 164 GKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLE-QANTLFAEM--KSHSCSP 218
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 205 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 264
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 265 IYKRMLSQSLLPDLITYNTLIYGLC 289
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 241 PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHL 300
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 301 IDEMSMKGLKPDKITYTTLIDGCC 324
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 156 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 213
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 214 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 252
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 261 LAMEIYKRMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTL 319
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 320 IDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLC 359
>gi|357505557|ref|XP_003623067.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498082|gb|AES79285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 68/127 (53%), Gaps = 3/127 (2%)
Query: 109 IVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+V+ LI L ++ + + A +FD K Y LI L G++ EA ++W+
Sbjct: 369 VVSTLIHWLCKKGKVLEARNVFDEFGKGS--VASLLTYNTLIAGLCEGGELCEAARLWDD 426
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
M ++ + P++ TY +I+GF K G+ + + + E+M+++ P + + IL+ G+L
Sbjct: 427 MVEKGVAPNAFTYNMLIKGFCKVGNAKEGIRVLEEMLENRCLPNKSTYTILIDGILLLGG 486
Query: 228 LRSKVKK 234
++ ++ K
Sbjct: 487 MKQEINK 493
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F + + W PD Y L+ R GK+ +A++V + M + P+ TY +I
Sbjct: 245 AMKVFREVLDRGW-SPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMI 303
Query: 185 RGFLKDGSPADAMNIYEDMI 204
+ + K+ +A+N+ EDMI
Sbjct: 304 QAYCKEKKSGEAVNLIEDMI 323
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 105 LKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
L +V +L E E+ A +++ ++ +++ A + LI L + GK+ EA V
Sbjct: 333 LCCKVVDLLCEEGNVEK---ACEMWRMVSRKNCGLNGAVVVSTLIHWLCKKGKVLEARNV 389
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ K + TY +I G + G +A +++DM++ P + +L+KG
Sbjct: 390 FDEFGKGSV-ASLLTYNTLIAGLCEGGELCEAARLWDDMVEKGVAPNAFTYNMLIKGFC 447
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L + E +AVK+ D + P+ Y ++ G M+ AM+V+ +
Sbjct: 197 LLKALCKGNEVEVAVKVLDEMPGMG-LVPNVVSYTTVLGGFVWRGDMDGAMKVFREVLDR 255
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD +YT ++ GF + G DA+ + + M + P E+ + ++++
Sbjct: 256 GWSPDVTSYTVLVDGFCRLGKLVDAIRVMDIMEDNGVEPNEVTYGVMIQA 305
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I A+L L + + LA +F ++ P+ L+ AL + ++ A++V +
Sbjct: 157 SINALLNSLVQNKRYRLAFLVFKNCGERFRVLPNVVSCNILLKALCKGNEVEVAVKVLDE 216
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M L P+ +YT V+ GF+ G AM ++ +++ P+ + +L+ G
Sbjct: 217 MPGMGLVPNVVSYTTVLGGFVWRGDMDGAMKVFREVLDRGWSPDVTSYTVLVDGFC 272
>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
velutina]
Length = 406
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 184 QPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 243
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 244 IYKQMLSQSLLPDLITYNTLIYGLC 268
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 46/91 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 220 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 279
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+DM + P+++ + L+ G +L S
Sbjct: 280 IDDMSRKGLKPDKITYTTLIDGCCKEGVLVS 310
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P A Y L+ R G ++E ++ +M + PD TY+
Sbjct: 135 VAQSVFDAITK--WGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSV 192
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 193 LINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDG 231
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M ++ L PD TYT +
Sbjct: 240 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTL 298
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + +I+ +++ + L+ GL
Sbjct: 299 IDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLC 338
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D +Y LI L + G+ +A ++ M L PD+ TYT +I F K G
Sbjct: 320 QENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVW 379
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 380 KGSKLLKEMQRDGHVPSVVTYNVLMNG 406
>gi|302816774|ref|XP_002990065.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
gi|300142185|gb|EFJ08888.1| hypothetical protein SELMODRAFT_130980 [Selaginella moellendorffii]
Length = 458
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 89 DEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
+E L+K + +LL ++ +L + ++ + A+K+F+++R Q WYQP A Y L
Sbjct: 4 EEASLRKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRL 63
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
+ L + + +EA ++++M + P + +T ++ + + + AM + + M +P
Sbjct: 64 LEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPH 123
Query: 209 -PPEELPFRILLKGLL 223
P+ + +L+K
Sbjct: 124 CSPDVFTYSLLIKSCC 139
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 3/116 (2%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A++ R A+++ + PD + Y LI + G+++ A + M
Sbjct: 96 TALMSAYTRSNLMSTAMEVLQAMNATPHCSPDVFTYSLLIKSCCDCGQLSRASDLLADMT 155
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP---PEELPFRILLKGL 222
+ P+ TY ++ + K GS ++ M++SP P P+ ++KG
Sbjct: 156 ARGIQPNRVTYNIILDAYAKSGSLDKLHDLALQMLQSPSPSCRPDHWSRNAIVKGF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
YQ DA Y LI A R G+ + ++ + SM+ + PDS TY +I + K G
Sbjct: 267 YQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFG 320
>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 418
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+ A +++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P A + L+ R G ++E ++ +M+ + PD
Sbjct: 148 KEGEIKLAQSVFDAITK--WGLRPTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ A ++ +M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDG 250
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKVTYTTLIDG 320
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 126 VKIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
K F + R + + +P+ +Y LI A+ ++ + EA +++ + + L P+ Q YT +
Sbjct: 489 AKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTI 548
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
I G K+G +A+ + +M + PP E + ++++G L H
Sbjct: 549 INGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQH 590
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 1/110 (0%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E + A K+FD++ + +PD + Y LI + ++ EA Q++ M + L PD
Sbjct: 380 QAEVVEARKLFDVMITKGC-KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 438
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+Y +I G + G +A +++++M+ + + P+ + ILL G L
Sbjct: 439 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYL 488
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA ++++M PD TY+ ++ GF K G A A +
Sbjct: 435 PDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRL 494
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M + P + + IL+ + L+ + +K F ELF +
Sbjct: 495 FRAMQSTYLKPNMVMYNILIDAMCKSRNLK-EARKLFSELFVQ 536
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 87/197 (44%), Gaps = 13/197 (6%)
Query: 36 KPKSPIVDFVAH-EPILGLRQYHDGRPRGSLWRGKKLIG----KEALFVILG----LKRF 86
KP+ I+ F I+ +R YHD SL + +L G L +++ L+R
Sbjct: 116 KPRPCIIQFNKLLSAIVKMRHYHDAVI--SLSKQMELAGLSPDTYTLHMLINCFFQLQRV 173
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYK 146
L K IK L+L + ++ L + + AV++FD + + YQPD + Y
Sbjct: 174 DLGFSVLAKIIKLG-LQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR-GYQPDVHTYT 231
Query: 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
+I L + G+ A ++ M + PD TY+ +I KD +A++I+ M
Sbjct: 232 TIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAK 291
Query: 207 PDPPEELPFRILLKGLL 223
P + L++GL
Sbjct: 292 GISPNIFTYNSLIQGLC 308
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ IY +I L + G ++EA++ + +M ++ P+ +Y +IRGFL+ + A+
Sbjct: 539 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQ 598
Query: 199 IYEDM 203
+ +M
Sbjct: 599 LIGEM 603
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 121 ETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
ET+ A +F RK + QPD Y +I +L + ++NEA+ ++ M+ + + P+
Sbjct: 242 ETVAAAGLF---RKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIF 298
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY +I+G +A + +M+ P + F +L+
Sbjct: 299 TYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 340
>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
Length = 683
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y++ L+ A A+ K+ EAM V+ MR++ L P++ TY VI K G
Sbjct: 256 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVE 315
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
DAM +E MI P + + L+ GL
Sbjct: 316 DAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 345
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+FD++ + +PD Y LI GKM+EA ++ SM + PD TY+ +I G
Sbjct: 389 KLFDLMVRI-GVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLING 447
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ K DA+ ++ +M S P+ + + I+L+GL
Sbjct: 448 YCKISRMKDALVLFREMESSGVSPDIITYNIILQGL 483
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + +++AM+V +M K + PD TY ++ GF G P +A+
Sbjct: 120 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 179
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 180 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRC-TEARKIFDSM--TKRGLKPEITTYGTL 234
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L P+ TY +++G+ G+
Sbjct: 185 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEITTYGTLLQGYATKGAL 244
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P F IL+
Sbjct: 245 VEMHGLLDLMVRNGIHPNHYVFSILV 270
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY ++ K+G +A I
Sbjct: 156 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 215
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K PE + LL+G
Sbjct: 216 FDSMTKRGLKPEITTYGTLLQG 237
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + +M +A+ ++ M + PD TY +++G + A A
Sbjct: 435 KPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKE 494
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+Y + KS E + I+L GL + L
Sbjct: 495 LYVGITKSGRQLELSTYNIILHGLCKNKL 523
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V + E+ EE +L +F +R+Q P+A Y +I L ++G++ +AM +E M
Sbjct: 269 LVCAYAKQEKVEEAML---VFSKMRQQGL-NPNAVTYGAVIGILCKSGRVEDAMLYFEQM 324
Query: 169 RKEDLFPDSQTYTEVIRGFL 188
E L P + Y +I G
Sbjct: 325 IDEGLSPGNIVYNSLIHGLC 344
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ L + EA+++ M + D PD +Y+ VI GF K+G
Sbjct: 49 PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y +M+ P + + ++ L
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALC 134
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D + PD Y LI ++ ++ + +++ M L D+ TYT +I
Sbjct: 309 AKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G DG +A +++ M+ PP+ + + ILL GL +
Sbjct: 368 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 408
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A Q+ M ++ + P+ T+ +I F+K+G +A
Sbjct: 217 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+++DMIK P+ + L+ G H L K K+ FE + FP+ Y+ + F
Sbjct: 277 LHDDMIKRSIDPDIFTYNSLINGFCMHDRL-DKAKQMFEFMVSKDCFPDLDTYNTLIKGF 335
Query: 254 GK 255
K
Sbjct: 336 CK 337
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I++ PD + Y LI ++++A Q++E M +D FPD TY +I+GF K
Sbjct: 280 DMIKRS--IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 337
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
D ++ +M + + + L++GL H +K F+++ +
Sbjct: 338 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF-HDGDCDNAQKVFKQMVSD 389
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L GK+ +A++V++ M+K ++ D YT +I G K G
Sbjct: 388 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 447
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +++ + P + + ++ GL LL+
Sbjct: 448 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 482
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I K+ P+ + LI A + GK EA ++ + M K + PD TY +I GF
Sbjct: 245 DMIEKK--INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM 302
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A ++E M+ P+ + L+KG +SK +D ELF E
Sbjct: 303 HDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG-----FCKSKRVEDGTELFRE 350
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L + EA + + M+++ PDS TY +IR L+DG A +
Sbjct: 462 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 521
Query: 199 IYEDM 203
+ +M
Sbjct: 522 LIREM 526
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 129 FDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
F+++ K + + D I+ +I +L + +++A+ +++ M + + P+ TY+ +I
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G +DA + DMI+ P + F L+
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALI 262
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 69 KKLIGKEALFVILGLKRFKD-DEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETIL 124
+ L+G + L F D D + QK K V + DI+ I L+ +
Sbjct: 354 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 413
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD ++K + + D YIY +I + + GK+++ ++ S+ + + P+ TY +I
Sbjct: 414 ALEVFDYMQKSEI-KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 472
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A + + M + P+ + L++ L
Sbjct: 473 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 511
>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
filifolia]
Length = 431
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLC 293
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 305 IDEMSMKGLQPDKITYTTLIDGCC 328
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDG 256
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 363
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD++TYT +I F K G
Sbjct: 345 QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVW 404
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 405 KGSKLLKEMQRDGHVPSVVTYNVLMNG 431
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ LA +IFD + K + PD Y Y LI L++ G++ E+ + + M++ L P+
Sbjct: 501 REGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 559
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY+ +I G+LK+G A + + M+ + P ++ + LL+
Sbjct: 560 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLE 602
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L ++ + NEA + + M +L P+ Y +I GF+++G+ +A +
Sbjct: 312 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 371
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M+ + P ++ + L++GL
Sbjct: 372 IKEMVAAGVQPNKITYDNLVRGL 394
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y +L+ L + G+M+ A + + M ++ PD+ TY +I G + S DA
Sbjct: 381 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 440
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +M + P + I++ GL
Sbjct: 441 LLSEMENAGISPNVYTYSIMIHGL 464
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y +LI R G +EA ++ + M + P+ TY ++RG K G A
Sbjct: 346 KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASL 405
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + M++ P+ + + ++++G H KKD L E
Sbjct: 406 LLKQMVRDSHRPDTITYNLIIEGHFRH-----HSKKDAFRLLSE 444
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A++Y LI R G ++ A ++++ M K ++ PD Y +I G K G ++
Sbjct: 486 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 545
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ M + P E + L+ G L + L S
Sbjct: 546 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 577
Score = 43.9 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 75 EALFVILGLKRFK-DDEEKLQKFIKTHVLRLLKMD--IVAVLIE-LERQEETILAVKIFD 130
+ +++ L FK DD EK+ K+ + + + +D I +LI L A ++
Sbjct: 594 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 653
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I K + PD ++Y LI L +T +A + + M K+ + P+ Y +I G K
Sbjct: 654 GIEK-NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 712
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G + A N++ ++ P + + L+ G
Sbjct: 713 GDISYARNVFNSILAKGLVPNCVTYTSLIDG 743
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY LI L+ +G M A +V + K PD Y+ +I G K A I
Sbjct: 628 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 687
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++M K P + + L+ GL
Sbjct: 688 DEMSKKGVDPNIVCYNALIDGL 709
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D ++PD Y +I R +A ++ M + P+ TY+ +I G + G P
Sbjct: 412 RDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPE 471
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A ++ E+M P + L+ G
Sbjct: 472 KASDLLEEMTTKGLKPNAFVYAPLISG 498
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI A + + + A +V MR+ ++ TY +I G + G+ +A
Sbjct: 242 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 301
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+DM P+ + L+ GL
Sbjct: 302 KKDMEDYGLVPDGFTYGALINGL 324
>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y +I L + G+ +A+ +++ M ++ P + TY +I G K+G DA
Sbjct: 147 QPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFK 206
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
I+E M++ E + + L+ GL + L +K F L + + +P
Sbjct: 207 IFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKL-FSSLLEDGNYVEP 255
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ +Y LI + G EA V +M + + PD TYT +I G KDG A++
Sbjct: 112 SPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALD 171
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+++ M + + P + + +L+ GL + K
Sbjct: 172 LFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFK 206
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+++ Y L+ L + G++ EAM++ M+++ L D Y+ +I GF G
Sbjct: 42 EPNSFTYCILMDGLCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKA 101
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++++M++ P + + L+ G L R
Sbjct: 102 LFDEMLEKGISPNVVVYSCLINGFCKKGLWR 132
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTE 182
A KIF+ + ++ + + Y LI+ L GK++EAM+++ S+ ++ + PD T+
Sbjct: 204 AFKIFETMLEK-GKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNT 262
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
VI+G K+G A+ IY+ MI+ IL+
Sbjct: 263 VIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILI 299
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q PDAY Y I L++ G+M EA ++SM + PD+ Y +I+GF +
Sbjct: 424 QQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEI 483
Query: 194 ADAMNIYEDM 203
+ +N+ M
Sbjct: 484 EEVINLLRQM 493
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +PD + +I + G ++ A ++ M++ L PD+ TY+ I K G
Sbjct: 389 KESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQM 448
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A ++ MI S P+ + L+KG
Sbjct: 449 EEAKGAFDSMIASGITPDNHVYDSLIKG 476
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 62/128 (48%), Gaps = 5/128 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I+D + ++ + + + LI ++G +++AM++W+ + K L P S TY+ +I
Sbjct: 276 AVEIYDTMIERGSF-GNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMI 334
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF K A ++ M S P + L+ L L + ++ F+E+ K
Sbjct: 335 DGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESSLE-QARRLFQEM---KE 390
Query: 245 AYDPPEEI 252
+ P+ I
Sbjct: 391 SNCEPDTI 398
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P + Y L+ +L + + +A ++++ M++ + PD+ ++ +I G LK G A
Sbjct: 359 SPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKE 418
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAYDPPEEIF 253
+ DM + P+ + + L + + K F+ + P+ H YD + F
Sbjct: 419 LLNDMQQMGLTPDAYTYSSFINRLSKLGQME-EAKGAFDSMIASGITPDNHVYDSLIKGF 477
Query: 254 G 254
G
Sbjct: 478 G 478
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ LA +IFD + K + PD Y Y LI L++ G++ E+ + + M++ L P+
Sbjct: 374 REGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 432
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY+ +I G+LK+G A + + M+ + P ++ + LL+
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLE 475
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L ++ + NEA + + M +L P+ Y +I GF+++G+ +A +
Sbjct: 185 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 244
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M+ + P ++ + L++GL
Sbjct: 245 IKEMVAAGVQPNKITYDNLVRGL 267
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y +LI R G +EA ++ + M + P+ TY ++RG K G A
Sbjct: 219 KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASL 278
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ + M++ P+ + + ++++G H
Sbjct: 279 LLKQMVRDSHRPDTITYNLIIEGHFRH 305
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y +L+ L + G+M+ A + + M ++ PD+ TY +I G + + DA
Sbjct: 254 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFR 313
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +M + P + I++ GL
Sbjct: 314 LLSEMENAGISPNVYTYSIMIHGL 337
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A++Y LI R G ++ A ++++ M K ++ PD Y +I G K G ++
Sbjct: 359 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 418
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ M + P E + L+ G L + L S
Sbjct: 419 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 450
Score = 43.9 bits (102), Expect = 0.057, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 75 EALFVILGLKRFK-DDEEKLQKFIKTHVLRLLKMD--IVAVLIE-LERQEETILAVKIFD 130
+ +++ L FK DD EK+ K+ + + + +D I +LI L A ++
Sbjct: 467 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 526
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I K + PD ++Y LI L +T +A + + M K+ + P+ Y +I G K
Sbjct: 527 EIEK-NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 585
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G + A N++ ++ P + + L+ G
Sbjct: 586 GDISYARNVFNSILAKGLVPNCVTYTSLIDG 616
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY LI L+ +G M A +V + K PD Y+ +I G K A I
Sbjct: 501 DNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 560
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++M K P + + L+ GL
Sbjct: 561 DEMSKKGVDPNIVCYNALIDGL 582
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D ++PD Y +I R +A ++ M + P+ TY+ +I G + G P
Sbjct: 285 RDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPE 344
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A ++ E+M P + L+ G
Sbjct: 345 KASDLLEEMTTKGLKPNAFVYAPLISG 371
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI A + + + A +V MR+ ++ TY +I G + G+ +A
Sbjct: 115 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 174
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+DM P+ + L+ GL
Sbjct: 175 KKDMEDYGLVPDGFTYGALINGL 197
>gi|218193284|gb|EEC75711.1| hypothetical protein OsI_12542 [Oryza sativa Indica Group]
Length = 1031
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+II K+ Y D Y ++ + G++NE ++ +M + +++P S +Y ++ G++K
Sbjct: 694 EIICKEGLYA-DCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIK 752
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
G + + +Y DM+K P+ + +R+L+ GL + L+ VK E++ E+ P
Sbjct: 753 KGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKF-LEKMVLEESGLQP 810
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D L++ + + G ++EA+ + E M ++ PD+ TYT ++ GF K G A+ +
Sbjct: 598 DEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKIVPALILL 657
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ M++ P+ + + LL GL+
Sbjct: 658 QMMLEKGLVPDTIAYTCLLNGLV 680
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI GK+N A+ ++ M ++ L P TYT +I G+ ++G +A +
Sbjct: 332 PDECSYNTLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRV 391
Query: 200 -YEDMIKSPDPPEELPFRILLKGLL 223
YE I P E + +LK +L
Sbjct: 392 LYEMQITGVRPREVSKAKQILKCML 416
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD Y LI + + G ++E ++ M+K + P++ YT ++ F K G +
Sbjct: 418 DGIDPDVITYSALINGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKE 477
Query: 196 AMNIYEDMIKS 206
A+ + D+ +S
Sbjct: 478 ALKYFVDIYRS 488
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+AVK + ++ ++ QP Y LI A R G ++ A ++ E M+ + P +
Sbjct: 793 IAVKFLEKMVLEESGLQPKHTHYIALINAKCRVGDIDGAFELKEDMKALGVVPSEVAESS 852
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++RG K G +A+ ++ ++++ P F L+ GL
Sbjct: 853 IVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGL 892
Score = 40.8 bits (94), Expect = 0.49, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++ I+ L+ + R G + EA Q + M + + D ++ +I + + G+ +A ++Y
Sbjct: 493 NSVIHNALLCSFYREGMIAEAEQFKQYMSRMKISFDVASFNCIIDSYCQRGNVLEAFSVY 552
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++M++ PP+ + LL+GL
Sbjct: 553 DNMVRHGWPPDICTYGSLLRGL 574
Score = 40.0 bits (92), Expect = 0.96, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ + GK+ A+ + + M ++ L PD+ YT ++ G + +G A +
Sbjct: 632 PDTYTYTILLDGFCKRGKIVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYM 691
Query: 200 YEDMI 204
++++I
Sbjct: 692 FQEII 696
>gi|242054627|ref|XP_002456459.1| hypothetical protein SORBIDRAFT_03g036700 [Sorghum bicolor]
gi|241928434|gb|EES01579.1| hypothetical protein SORBIDRAFT_03g036700 [Sorghum bicolor]
Length = 429
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 59/99 (59%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KI++++++++ QP+A Y + L G+M +A V + M KE PDS +Y E+I
Sbjct: 235 AEKIWEMMKERNL-QPNAKTYNAKLRGLVAEGRMEDAAAVIQRMLKEGPKPDSVSYNELI 293
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
RG+ K+G ++ +Y++++K+ P + F L+ L+
Sbjct: 294 RGYCKEGRLDESKKVYDELVKNGYAPNKGTFETLIPCLV 332
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
D+I D PD + L+ G+ ++A ++WE M++ +L P+++TY +RG
Sbjct: 201 LDVISLMDKCGLTPDMVSFNSLLNGFYNNGRFDKAEKIWEMMKERNLQPNAKTYNAKLRG 260
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ +G DA + + M+K P+ + + L++G L + KK ++EL K+ Y
Sbjct: 261 LVAEGRMEDAAAVIQRMLKEGPKPDSVSYNELIRGYCKEGRL-DESKKVYDELV--KNGY 317
Query: 247 DPPEEIFGKL 256
P + F L
Sbjct: 318 APNKGTFETL 327
>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
nodiflora]
Length = 431
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y LI L + KM++A ++++ M ++ L P+S T+T +I G K+G AM
Sbjct: 209 HPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLVTYNALIYGLC 293
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M++ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDG 256
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + LI + G ++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 305 IDEMSMXGLKPDKITYTTLIDGCC 328
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLC 363
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD++TYT +I F K G +
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
I AV+I+ + K++ +PD Y LI L++ G+++EA ++ + M + FPD+ TYT
Sbjct: 281 IEAVRIYKQM-KEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMVESGHFPDAVTYTS 339
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ G ++G A + E+M P + LL G
Sbjct: 340 LMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNTLLHGFC 380
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 51/92 (55%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ K+ +PDA++Y ++ K EA+++++ M++E + PD TY +I G K G
Sbjct: 254 VLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCG 313
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++A + + M++S P+ + + L+ G+
Sbjct: 314 RVSEAKKLLKIMVESGHFPDAVTYTSLMNGMC 345
>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
Length = 690
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y LI L + G++ EA ++ + K + P TY+ +I GF K G+
Sbjct: 388 SPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFA 447
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+YEDMIK PP+ + + +L+ GL L+
Sbjct: 448 LYEDMIKMGYPPDVVIYGVLVDGLSKQGLM 477
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D ++ I ++G + A V++ M + + P+ TYT +I+G +DG +A +Y
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++K P + + L+ G LRS +E++ K Y P I+G L
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL-YEDMI--KMGYPPDVVIYGVL 467
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I VL++ ++ +L F + + + ++ LI R + +EA++V+ M
Sbjct: 463 IYGVLVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLM 522
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ PD T+T V+R + +G +A+ ++ M K P+ L + L+ H
Sbjct: 523 GIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKH 579
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ LA +IFD + K + PD Y Y LI L++ G++ E+ + + M++ L P+
Sbjct: 479 REGNVSLACEIFDKMTKVN-VLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 537
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY+ +I G+LK+G A + + M+ + P ++ + LL+
Sbjct: 538 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLE 580
Score = 51.6 bits (122), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 47/83 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L ++ + NEA + + M +L P+ Y +I GF+++G+ +A +
Sbjct: 290 PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKM 349
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M+ + P ++ + L++GL
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGL 372
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y +L+ L + G+M+ A + + M ++ PD+ TY +I G + S DA
Sbjct: 359 QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFR 418
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +M + P + I++ GL
Sbjct: 419 LLSEMENAGISPNVYTYSIMIHGL 442
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y +LI R G +EA ++ + M + P+ TY ++RG K G A
Sbjct: 324 KPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASL 383
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + M++ P+ + + ++++G H KKD L E
Sbjct: 384 LLKQMVRDSHRPDTITYNLIIEGHFRH-----HSKKDAFRLLSE 422
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A++Y LI R G ++ A ++++ M K ++ PD Y +I G K G ++
Sbjct: 464 KPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTK 523
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ M + P E + L+ G L + L S
Sbjct: 524 YFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 555
Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 75 EALFVILGLKRFK-DDEEKLQKFIKTHVLRLLKMD--IVAVLIE-LERQEETILAVKIFD 130
+ +++ L FK DD EK+ K+ + + + +D I +LI L A ++
Sbjct: 572 DVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLS 631
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I K + PD ++Y LI L +T +A + + M K+ + P+ Y +I G K
Sbjct: 632 GIEK-NGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKS 690
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G + A N++ ++ P + + L+ G
Sbjct: 691 GDISYARNVFNSILAKGLVPNCVTYTSLIDG 721
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 36/82 (43%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY LI L+ +G M A +V + K PD Y+ +I G K A I
Sbjct: 606 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 665
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++M K P + + L+ GL
Sbjct: 666 DEMSKKGVDPNIVCYNALIDGL 687
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D ++PD Y +I R +A ++ M + P+ TY+ +I G + G P
Sbjct: 390 RDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPE 449
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A ++ E+M P + L+ G
Sbjct: 450 KASDLLEEMTTKGLKPNAFVYAPLISG 476
>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia seriphioides]
Length = 414
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+EA ++++ M L P T+T +I G K+G AM
Sbjct: 192 QPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAME 251
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 252 IYKQMLSQSLLPDLITYNTLIYGLC 276
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 143 VAQSVFDAITK--WGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 200
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ +A ++++M+ P + F L+ G
Sbjct: 201 LINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDG 239
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + LI + G+++ AM++++ M + L PD TY +I G K G A +
Sbjct: 228 PXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVL 287
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M P+++ + L+ G
Sbjct: 288 IXEMSLKGXKPDKITYTTLIDGCC 311
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + M + PD TYT +
Sbjct: 248 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTL 306
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 307 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 346
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M PD++TYT +I F K G
Sbjct: 328 QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVW 387
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 388 TGSKLLKEMQRDGHVPSVVTYNVLMNG 414
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+ + +IY LI L + GK EAM +W+ M ++ P+ Y+ VI G ++G P +A
Sbjct: 358 YRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAK 417
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
I MI S P + L+KG L
Sbjct: 418 EILNGMISSGCLPNVYTYSSLMKGFFKTGL 447
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ + Y LI L G++ EAM VW M + PD+ Y+ +I+G GS A+ +Y
Sbjct: 466 NEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLY 525
Query: 201 EDMIKSPDP---PEELPFRILLKGLL 223
+M+ +P P+ + + ILL GL
Sbjct: 526 HEMLCQEEPKSQPDVVTYNILLDGLC 551
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y +I L R GK NEA ++ M P+ TY+ +++GF K G +A+
Sbjct: 394 RPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQ 453
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M ++ E + +L+ GL
Sbjct: 454 VWREMDETGCSRNEFCYSVLIDGLC 478
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y L+ +TG EA+QVW M + + Y+ +I G G +AM +
Sbjct: 430 PNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMV 489
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M+ P+ + + ++KGL + + +K E L E+ P
Sbjct: 490 WSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L + ER +E +L + D ++ + P IY LI L + G ++ ++ ++M +
Sbjct: 232 LCKEERIDEAVL---LLDEMQSEGC-SPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKG 287
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
FP+ TY +I G G A+++ E M+ S P ++ + L+ GL+
Sbjct: 288 CFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLV 338
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ L + +++EA+ + + M+ E P Y +I G K G + +
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKL 279
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P E+ + L+ GL
Sbjct: 280 VDNMFLKGCFPNEVTYNTLIHGLC 303
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + +I AL + G ++ A++V+ M ++ PD TY ++ G K+ +A+
Sbjct: 184 SPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVL 243
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ ++M P + + +L+ GL L S+V K + +F
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDGLCKKGDL-SRVTKLVDNMF 284
>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Brachypodium distachyon]
Length = 560
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 52/106 (49%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R +E ++ +++ P+ Y +I ++G+M +AM V+ M P
Sbjct: 273 LCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTP 332
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ TY +I G+ K G+ A+ +Y+ MI PP+ + F L+ G
Sbjct: 333 NAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDG 378
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y LI + G M A+ V++ M PD T++ +I G+ + G DAM
Sbjct: 332 PNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRT 391
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ +M + P F I++
Sbjct: 392 WTEMSQYQIQPNAHTFSIII 411
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ +Q + A++ + + P A+I +I L + GK++EA + M +
Sbjct: 410 IILSFCKQNRSAEALRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGK 469
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD TYT +I G G ++A+ + M+ + P+ + + LL
Sbjct: 470 GCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLL 521
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G++++AM+ W M + + P++ T++ +I F K A+A+
Sbjct: 367 PDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRF 426
Query: 200 YEDM 203
+++
Sbjct: 427 LKEL 430
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y LII G+++EA+ + M PDS T I LK G P++
Sbjct: 472 RPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDR 531
Query: 199 IYEDMIKSPDPPEELP 214
I + S +E+P
Sbjct: 532 IMKIASGSTSSSQEVP 547
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 99 THVLRLLKM-----DIVAVLI---ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150
T VL +K DIV I L + + LA+K+ D + D P Y LI
Sbjct: 157 TQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLL-LDNCMPTVITYTILIE 215
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
A G +NEAM++ E M L PD TY +IRG K+G + + +M P
Sbjct: 216 ATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFSRGCEP 275
Query: 211 EELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
++ + IL+ L +L+ ++K EL P+ ++YDP
Sbjct: 276 NKVTYSILISSLCRFGRIDEAISVLKVMIEK---ELTPDTYSYDP 317
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L R +E I +K+ +I K+ PD Y Y LI AL + G+++ A+ + + M
Sbjct: 283 LISSLCRFGRIDEAISVLKV--MIEKE--LTPDTYSYDPLISALCKEGRLDLAIGIMDYM 338
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
PD Y ++ K+G+ A+ I+ + PP +
Sbjct: 339 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPND 382
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI +L R G+++EA+ V + M +++L PD+ +Y +I K+G A+
Sbjct: 274 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 333
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I + MI + P+ + + +L L
Sbjct: 334 IMDYMISNGCLPDIVNYNTILAALC 358
>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ L + +R EE A +F+ + K+ + + +Y LI + GK++EA+ + E M
Sbjct: 501 IDTLCKSKRMEE---ACDLFNSL-KEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMH 556
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
ED P+S TY +I G K+G + +++ E+M K P + IL++ +L
Sbjct: 557 SEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEML 610
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/114 (17%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++++ R + A K+F+++ + + + Y +I L G+++E + +++ MR
Sbjct: 253 TSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVS-YTTIIHGLCEAGRIDEGISLFKKMR 311
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++D +P +TYT +I + + M+++ +M + P + +++ +
Sbjct: 312 EDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMC 365
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L +R E + +F+ +R++ +P+ + Y ++ A+ + K++E+ ++ M
Sbjct: 325 IIHALFGNDRNLE---GMDLFNEMRERSC-EPNVHTYTVMVDAMCKERKLDESRRILNEM 380
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ L P TY +IRG+ ++G A+ I M + P E + L+ G
Sbjct: 381 MEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGF 434
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y Y I +G + EA + M + + PDS TYT +I + + G DA
Sbjct: 630 HKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLGLAYDAF 689
Query: 198 NIYEDMIKSPDPPEE 212
N+ + M+ + P
Sbjct: 690 NVLKRMLDAGCDPSH 704
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 61/148 (41%), Gaps = 17/148 (11%)
Query: 64 SLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
+L + K++ LF L K K +E I H + K+D L+E E+ +
Sbjct: 503 TLCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHC-KAGKIDEAISLLERMHSEDCL 561
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
P++ Y LI + + GK+ E + + E+M K + P TYT +
Sbjct: 562 ----------------PNSSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTIL 605
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPE 211
I L++G A ++ M+ P+
Sbjct: 606 IEEMLREGDFDHANRVFNQMVSFGHKPD 633
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L E R +E + +F +R+ D Y P Y +I AL + E M ++ M
Sbjct: 290 IIHGLCEAGRIDE---GISLFKKMREDDCY-PTVRTYTVIIHALFGNDRNLEGMDLFNEM 345
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
R+ P+ TYT ++ K+ ++ I +M++ P + + L++G
Sbjct: 346 RERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRG 398
>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
Length = 800
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
++ +D P+ +Y I M EA++ +E M KE + D+ TYT +I GF KD
Sbjct: 620 VLMLKDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKD 679
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ A+ +Y +M+ + P+ + F L GL
Sbjct: 680 GNVTFALKLYSEMVAKGNIPDHITFTALTHGL 711
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Query: 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIE-LERQEETILAVKIF-DIIRKQ 135
I G K K EE L +F + + + +D LI+ + A+K++ +++ K
Sbjct: 638 ITGYKNLKMMEEAL-RFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKG 696
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ PD + L L R G +++A ++ + M + D+ P+ Y +I G+L++G +
Sbjct: 697 NI--PDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQE 754
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
A ++++M++ P++ + IL+
Sbjct: 755 AFRLHDEMLERKIMPDDTTYDILV 778
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ + +R + +PD Y LI + G M+ A+QV M K+ L P+ Y
Sbjct: 579 LALKMLNDVRCKG-LRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPNISVYNSF 637
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
I G+ +A+ YE MIK + + L+ G
Sbjct: 638 ITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGF 676
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ+ + Y Y LI L G++ E ++ + E P + TY +I GF+K G
Sbjct: 483 KQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMM 542
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
A +Y+ M PP + + + G
Sbjct: 543 GSAFAVYQQMCAKGIPPNIVTYTSFIDG 570
Score = 45.4 bits (106), Expect = 0.024, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+ Y LI L + K+ EA+ +WE M + + P TY ++ + +G +A+ +
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
Y +M P + + L+KG
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKG 465
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI ++ G + A++++ M + PD T+T + G ++G DA +
Sbjct: 665 DTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLCRNGDIDDARKLL 724
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE----ELFPEKHAYD 247
++M + P L + +L+ G L + L+ + E ++ P+ YD
Sbjct: 725 DEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHDEMLERKIMPDDTTYD 775
Score = 41.6 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
++ +A+ ++E ++ L P TYT +IRG ++G P A + M P F
Sbjct: 297 EVRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFN 356
Query: 217 ILLKGLLPHPLLRSKVKKDFEELFPE 242
+++KG LL K+ KD LF E
Sbjct: 357 MVIKG-----LLNDKLWKDAVSLFKE 377
Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E A+ IF+ + D P Y LI G +A ++ MR L P +
Sbjct: 295 QREVRKALDIFEETLR-DGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTN 353
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ VI+G L D DA++++++M S P+ + IL+ L
Sbjct: 354 EFNMVIKGLLNDKLWKDAVSLFKEMADS-GIPDAFTYNILIHWL 396
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D + PD Y LI ++ ++ + +++ M L D+ TYT +I
Sbjct: 308 AKQMFEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 366
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G DG +A +++ M+ PP+ + + ILL GL +
Sbjct: 367 QGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNN 407
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A Q+ M ++ + P+ T+ +I F+K+G +A
Sbjct: 216 RPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEK 275
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+++DMIK P+ + L+ G H L K K+ FE + FP+ Y+ + F
Sbjct: 276 LHDDMIKRSIDPDIFTYNSLINGFCMHDRL-DKAKQMFEFMVSKDCFPDLDTYNTLIKGF 334
Query: 254 GK 255
K
Sbjct: 335 CK 336
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I++ PD + Y LI ++++A Q++E M +D FPD TY +I+GF K
Sbjct: 279 DMIKRS--IDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCK 336
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
D ++ +M + + + L++GL H +K F+++ +
Sbjct: 337 SKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF-HDGDCDNAQKVFKQMVSD 388
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L GK+ +A++V++ M+K ++ D YT +I G K G
Sbjct: 387 SDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVD 446
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +++ + P + + ++ GL LL+
Sbjct: 447 DGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 481
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I K+ P+ + LI A + GK EA ++ + M K + PD TY +I GF
Sbjct: 244 DMIEKK--INPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCM 301
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A ++E M+ P+ + L+KG +SK +D ELF E
Sbjct: 302 HDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKG-----FCKSKRVEDGTELFRE 349
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L + EA + + M+++ PDS TY +IR L+DG A +
Sbjct: 461 KPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 520
Query: 199 IYEDM 203
+ +M
Sbjct: 521 LIREM 525
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D I+ +I +L + +++A+ +++ M + + P+ TY+ +I G +DA
Sbjct: 181 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 240
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ DMI+ P + F L+ +
Sbjct: 241 LLSDMIEKKINPNLVTFNALIDAFV 265
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 5/159 (3%)
Query: 69 KKLIGKEALFVILGLKRFKD-DEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETIL 124
+ L+G + L F D D + QK K V + DI+ I L+ +
Sbjct: 353 RGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEK 412
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD ++K + + D YIY +I + + GK+++ ++ S+ + + P+ TY +I
Sbjct: 413 ALEVFDYMQKSE-IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMI 471
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A + + M + P+ + L++ L
Sbjct: 472 SGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHL 510
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+FD++ + +P+ Y LI GKM+EA ++ SM + PD TY +I G
Sbjct: 497 KLFDLMVRI-GVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLING 555
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ + DA+ ++++M+ S P + + I+L+GL
Sbjct: 556 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 591
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ PD +++ LI A A+ K++EAM V+ MR+ L P+ TY VI K GS
Sbjct: 364 RNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVD 423
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DAM +E MI P + + L+ L
Sbjct: 424 DAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILI 378
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I AL + M++AM+V +M K + P+ TY ++ G+ P +A+
Sbjct: 228 SPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIG 287
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ M P+ + + L+
Sbjct: 288 FLKKMRSDGVEPDVVTYNSLM 308
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y ++ + + EA+ + MR + + PD TY ++ K+G
Sbjct: 259 KNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRST 318
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLP-------HPLLRSKVKKDFEELFPEKHAYD 247
+A I++ M K P+ + LL+G H LL V+ + P+ H ++
Sbjct: 319 EARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG---IHPDHHVFN 375
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALC 242
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G ++A + M + PD TY+ +I K + AM +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P + + +L G
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHG 275
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++R+ QP+ Y L+ A+ + +AM V + MR + P+ TY +I G +
Sbjct: 167 DMLRR--GCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 224
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+G DA ++ + P+ + + LLKGL SK D EELF E
Sbjct: 225 EGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCA-----SKRWDDVEELFAE 272
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDAY Y LI L G++ +A+ + + M + P+ TYT ++ K+ AM +
Sbjct: 140 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAV 199
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P + + +++ G+
Sbjct: 200 LDEMRAKGCTPNIVTYNVIINGMC 223
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I ++ + G++++A + +M PD+ +YT V++G + DA + ++M+++
Sbjct: 323 VINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNN 382
Query: 208 DPPEELPFRILL-----KGLLPHPLL 228
PP E+ F + KGL+ ++
Sbjct: 383 CPPNEVTFNTFICILCQKGLIEQAIM 408
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ + G ++EA+++ E M + P+ TY + G KD S DA+ +
Sbjct: 487 PNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALEL 546
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ P+ + F ++ G+L
Sbjct: 547 LHGLVSKGVSPDVITFSSII-GIL 569
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + +I L++ ++ EA+Q++ + + P + Y +++ G K +A++
Sbjct: 556 SPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAID 615
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
M+ + P E + IL++GL LL+
Sbjct: 616 FLAYMVSNGCMPNESTYIILIEGLAREGLLK 646
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E A+++++ + K+ +PD Y LI L+++G+++EA ++ M ++ FP
Sbjct: 282 LSRGSE---AIEVYNRM-KEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFP 337
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D TYT ++ G + G A+ + E+M P + LL GL
Sbjct: 338 DEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLC 385
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ DI+ +++ ++PD ++Y ++ + +EA++V+ M+++ + PD TY +I
Sbjct: 253 ATRLVDIL-EEEGFKPDCFLYNTIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLI 311
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G ++A + M + P+E+ + L+ G+
Sbjct: 312 FGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMC 350
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+++ + R+ ET+ A+ + + + + P+ Y L+ L ++ ++AM+++ +M+
Sbjct: 343 TSLMNGMCRKGETLAALALLEEMEMKGC-SPNTCTYNTLLHGLCKSRMFDKAMELYGAMK 401
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
+ L D +Y +R G ADA +++ ++S
Sbjct: 402 SDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVES 438
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 46/99 (46%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
L D +R + +P+ Y LI + T + EA ++ + + +E PD Y +
Sbjct: 216 LVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYNTI 275
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++G+ ++A+ +Y M + P+ + + L+ GL
Sbjct: 276 MKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGL 314
>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
Length = 418
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M+ P+ + + L+ GL
Sbjct: 263 IYRQMLSQSLLPDLITYNTLIYGLC 287
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM+++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Query: 121 ETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
E LA +FD I K W +P + L+ + G ++E ++ M+ + PD T
Sbjct: 151 EIXLAQSVFDSITK--WGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYT 208
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
Y+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 209 YSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDG 250
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYRQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ L
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLC 357
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +++ LI A AR G M++AM ++E M+ + + PD+ T+ VI + G DA++
Sbjct: 344 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 403
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH-PLLRSKVKKDFEELFPEKHAYDPP 249
+ M+ PP E + L++G H L+++K EL E D P
Sbjct: 404 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK------ELISEMMNKDIP 448
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ + L+ G M EA + ++M + P+ Y ++ G+ K+G
Sbjct: 480 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 539
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
DA+ ++ DM+ P + + I+L GL + KK F E+
Sbjct: 540 DALTVFRDMLHKGVKPTSVLYSIILHGLF-QARRTTAAKKMFHEM 583
Score = 37.4 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P I +I L + +M++A + + M + PD TY+ +I G K + A +
Sbjct: 167 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 226
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M+++ P + + L+ G
Sbjct: 227 LEQMVEAGTRPNSITYNSLIHG 248
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +++ LI A AR G M++AM ++E M+ + + PD+ T+ VI + G DA++
Sbjct: 400 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 459
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH-PLLRSKVKKDFEELFPEKHAYDPP 249
+ M+ PP E + L++G H L+++K EL E D P
Sbjct: 460 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK------ELISEMMNKDIP 504
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ + L+ G M EA + ++M + P+ Y ++ G+ K+G
Sbjct: 536 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 595
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
DA+ ++ DM+ P + + I+L GL + KK F E+
Sbjct: 596 DALTVFRDMLHKGVKPTSVLYSIILHGLF-QARRTTAAKKMFHEM 639
Score = 37.4 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P I +I L + +M++A + + M + PD TY+ +I G K + A +
Sbjct: 223 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 282
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M+++ P + + L+ G
Sbjct: 283 LEQMVEAGTRPNSITYNSLIHG 304
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +++ LI A AR G M++AM ++E M+ + + PD+ T+ VI + G DA++
Sbjct: 421 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 480
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH-PLLRSKVKKDFEELFPEKHAYDPP 249
+ M+ PP E + L++G H L+++K EL E D P
Sbjct: 481 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK------ELISEMMNKDIP 525
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ + L+ G M EA + ++M + P+ Y ++ G+ K+G
Sbjct: 557 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 616
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
DA+ ++ DM+ P + + I+L GL + KK F E+
Sbjct: 617 DALTVFRDMLHKGVKPTSVLYSIILHGLF-QARRTTAAKKMFHEM 660
Score = 37.4 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P I +I L + +M++A + + M + PD TY+ +I G K + A +
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 302
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M+++ P + + L+ G
Sbjct: 303 LEQMVEAGTRPNSITYNSLIHG 324
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 7/111 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +++ LI A AR G M++AM ++E M+ + + PD+ T+ VI + G DA++
Sbjct: 420 PNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHK 479
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH-PLLRSKVKKDFEELFPEKHAYDPP 249
+ M+ PP E + L++G H L+++K EL E D P
Sbjct: 480 FNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAK------ELISEMMNKDIP 524
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ + L+ G M EA + ++M + P+ Y ++ G+ K+G
Sbjct: 556 QTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRID 615
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
DA+ ++ DM+ P + + I+L GL + KK F E+
Sbjct: 616 DALTVFRDMLHKGVKPTSVLYSIILHGLF-QARRTTAAKKMFHEM 659
Score = 37.4 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P I +I L + +M++A + + M + PD TY+ +I G K + A +
Sbjct: 243 PKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERV 302
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M+++ P + + L+ G
Sbjct: 303 LEQMVEAGTRPNSITYNSLIHG 324
>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
salviifolia]
Length = 431
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L++ KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLC 293
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 45/91 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+DM + P+++ + L+ G L S
Sbjct: 305 IDDMSRKGLKPDKITYTTLIDGCCKEGDLDS 335
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M ++ L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLC 363
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P A Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDG 256
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y LI L + G+ +A ++ M L PD+ TYT +I F K G +
Sbjct: 351 DDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 116 LERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L R+ + AV + D++ K Y PDA Y L+ +L R K+ EA ++ M+ +
Sbjct: 198 LCRKSQVNRAVDLLEDMLNKG--YVPDALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCN 255
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
PD Y VI GF ++G DA + EDM + P + + L+ GL L + K
Sbjct: 256 PDIVHYNTVILGFCREGRXLDACKVLEDMPSNGCSPNLMSYGTLVSGLCDQGLY-DEAKN 314
Query: 235 DFEELFPEKHAYDPPEEIFGKL 256
EE+ + + P +F L
Sbjct: 315 YVEEMLSK--GFSPHFSVFHAL 334
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 129 FDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ + Y PD Y L+ A G ++ A ++ M K D+ PD ++Y +++G
Sbjct: 138 FDLFKSAHRYGVSPDTKSYNILMSAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQG 197
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ A+++ EDM+ P+ L + LL L
Sbjct: 198 LCRKSQVNRAVDLLEDMLNKGYVPDALSYTTLLNSLC 234
>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
Length = 535
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD + + ++P Y LI L ++ EA +VW+ M + P++ TY +I
Sbjct: 387 ARNLFDELERG--FKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALI 444
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+G K G P + ++E+M+ P L F++L+ L
Sbjct: 445 KGLCKTGKPNEGATVFEEMVSRGCKPSSLLFQVLVDSL 482
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+V+IE +EE + + F Y PD + ++ L + GK EA Q+W M K
Sbjct: 302 SVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEK 361
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+++ PD+ + +I K+G +A N+++++ + P L + L+ GL
Sbjct: 362 KNVPPDNMVTSTLIYWLCKNGMVREARNLFDELERGFK-PSLLTYNSLISGLC 413
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ P+ L+ L G ++ A++V + M + PD TYT V+ + G A
Sbjct: 188 YITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGA 247
Query: 197 MNIYEDMIKSPDPPEELPFRILLKG 221
+++D+I S P+ + +L+ G
Sbjct: 248 QKLFDDIIASGRRPDVTMYTVLIDG 272
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ A G + A ++++ + PD YT +I G+ + G+ DA I
Sbjct: 226 PDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARI 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + P E+ + ++++
Sbjct: 286 MDEMEAARVQPNEVTYSVVIEACC 309
>gi|357451329|ref|XP_003595941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484989|gb|AES66192.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E A+++++ + K+ +PD Y LI L+++G+++EA ++ M ++ FP
Sbjct: 285 LSRGSE---AIEVYNRM-KEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFP 340
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D TYT ++ G + G A+ + E+M P + LL GL
Sbjct: 341 DEVTYTSLMNGMCRKGETLAALALLEEMEMKGCSPNTCTYNTLLHGLC 388
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 93 LQKFIKTHVLRLLKMDIVAVLIELERQEETIL---AVKIFDIIRKQDWYQPDAYIYKDLI 149
++ K+ L L+ ++V I ++ T A ++ DI+ +++ ++PD ++Y ++
Sbjct: 221 VKNLCKSRTLSLVYPNLVTYTILIDNVCNTKNLREATRLVDIL-EEEGFKPDCFLYNTIM 279
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
+ +EA++V+ M+++ + PD TY +I G K G ++A + M +
Sbjct: 280 KGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHF 339
Query: 210 PEELPFRILLKGLL 223
P+E+ + L+ G+
Sbjct: 340 PDEVTYTSLMNGMC 353
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+++ + R+ ET+ A+ + + + + P+ Y L+ L ++ ++AM+++ +M+
Sbjct: 346 TSLMNGMCRKGETLAALALLEEMEMKGC-SPNTCTYNTLLHGLCKSRMFDKAMELYGAMK 404
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
+ L D +Y +R G ADA +++ ++S
Sbjct: 405 SDGLKLDMASYATFVRALCSVGRVADAYEVFDYAVES 441
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 118 RQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
R E+T A+K+F D+I K Y PD Y +++ LAR M+EA ++++ M P+
Sbjct: 199 RVEKTDEAMKLFKDVIAK--GYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPN 256
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
TY+ V+ G + G+ A + +YE+M + P+ +LL + L ++K D
Sbjct: 257 GATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPD-----VLLCNAVIDMLCKAKKVDDA 311
Query: 237 EELFPE 242
++ E
Sbjct: 312 HKVLEE 317
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y +I L +TGK+ EA+++ E M ++ + PD TYT ++ + G +A
Sbjct: 6 FEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEAD 65
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
++ MI+ + + L+ GL + LL K +E P+ Y+
Sbjct: 66 ELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYE---PDNITYNT 120
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 7/105 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L + GK++EA + + M + ++ PD T T ++ G +D +A+ +
Sbjct: 395 PDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRL 454
Query: 200 YEDMIKSPDPPEELPFRILLKGL-----LPHPLL--RSKVKKDFE 237
++ M++ + LP I+L GL L LL +S VK D E
Sbjct: 455 FQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGE 499
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 99/220 (45%), Gaps = 13/220 (5%)
Query: 13 ILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPIL-GL---RQYHDGRPRGSLWRG 68
+L + NL + FS + +P D V++ +L GL + HD R
Sbjct: 333 LLDGLCKTNLVDKAHELFSTMVDNGCAP--DIVSYSVVLNGLCKTNKVHDARVLFDRMIE 390
Query: 69 KKLIGKEALFVIL--GL-KRFKDDEEK-LQKFIKTHVLRLLKMDIVAVLIELERQEETIL 124
+KL+ F IL GL K K DE K L + H + + ++ L R + T
Sbjct: 391 RKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDE 450
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTE 182
AV++F + ++ D + ++ L R GK+ +A+ ++SM K D PD TYT
Sbjct: 451 AVRLFQYMVEKGTV-ADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTT 509
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ ++ G A++ ++ M S P+ + + L+ GL
Sbjct: 510 LVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL 549
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L L R + A + FD + + Y PD Y L+ AL + GK+ EA ++++M
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSR-GYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDM 178
Query: 171 ED--LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
D + PD TY +I GF + +AM +++D+I P+ + + +L GL
Sbjct: 179 ADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 232
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD Y ++ L R GK++EA Q ++SM PD Y ++ K+G A+A
Sbjct: 111 YEPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAW 170
Query: 198 NIYE--DMIKSPDPPEELPFRILLKGLL 223
+++ DM P+ + + L+ G
Sbjct: 171 GLFKTMDMADRKVAPDLITYNTLIDGFC 198
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L +T +++A +++ +M PD +Y+ V+ G K DA +
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVL 384
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ MI+ P+ + F IL+ GL
Sbjct: 385 FDRMIERKLVPDVVTFNILMDGLC 408
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI R K +EAM++++ + + PD+ TY ++ G + + +A +
Sbjct: 185 PDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEM 244
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ S P + I+L G
Sbjct: 245 FKKMVDSGCAPNGATYSIVLSG 266
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ L R GK++EA +++ M + ++ Y +I G KD + A
Sbjct: 42 NPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYK 101
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E+M P+ + + +L GL
Sbjct: 102 LLEEMASKGYEPDNITYNTILSGLC 126
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + +I L + K+++A +V E M K PD TY ++ G K A
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 347
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ M+ + P+ + + ++L GL
Sbjct: 348 ELFSTMVDNGCAPDIVSYSVVLNGLC 373
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 73 GKEALFVILGLKRFKDDEEKLQKFI----KTHVLRLLKMDIVAVLIELERQEETILAVKI 128
G ++ GL R K +E ++ F K V +L +IV L L R+ + A+
Sbjct: 432 GVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIV--LAGLCREGKLAQALLF 489
Query: 129 FDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
F + K D + PD Y L+ AL G++++A+ ++ M PD Y ++ G
Sbjct: 490 FKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGL 549
Query: 188 LKDG 191
K G
Sbjct: 550 RKQG 553
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 55/101 (54%), Gaps = 2/101 (1%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K F + R + + +P+ +Y L+ A+ ++G + +A +++ + L P+ Q YT +I
Sbjct: 343 KAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTII 402
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K+G +A+ + +M PP+E + ++++G L H
Sbjct: 403 NGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQH 443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + LI L + GK +A+++++ M PD TYT +I G K G A A
Sbjct: 42 QPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAG 101
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+++ M ++ + + L+ H L + + + ++F A D IF
Sbjct: 102 LFKKMEEAGCQLNVVTYSTLI-----HSLCKYRRVNEALDIFSYMKAKDISPTIF 151
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G++ EA ++++M P+ TY ++ GF K G A +
Sbjct: 288 PNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRL 347
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M + P + + IL+ + + +S KD ELF E
Sbjct: 348 FRAMQSTYLKPNLVMYNILV-----NAMCKSGNLKDARELFSE 385
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ IY +I L + G ++EA++ + +M + PD +Y +IRGFL+ + A++
Sbjct: 392 QPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKDESRAVH 451
Query: 199 IYEDM 203
+ +M
Sbjct: 452 LIGEM 456
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
VL++ +E +LA + + +PD Y L+ + ++ EA ++++ M +
Sbjct: 190 VLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITK 249
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
PD +Y+ +I G+ K +A ++ +MI P + + L+ GL LR
Sbjct: 250 GCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLR-- 307
Query: 232 VKKDFEELFPEKHA 245
+ ++LF H
Sbjct: 308 ---EAQDLFKNMHT 318
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++ L + ET LA +F + + Q + Y LI +L + ++NEA+ ++ M+
Sbjct: 84 TTIINGLCKIGETALAAGLFKKMEEAGC-QLNVVTYSTLIHSLCKYRRVNEALDIFSYMK 142
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+D+ P TYT +I+G +A + +M P + F +L+
Sbjct: 143 AKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLV 192
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y +I A ++GK+ EA + + MRK+ PD TY VI G K G A+A I
Sbjct: 352 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 411
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLL 228
E M +S D P+ + + ++ GL +L
Sbjct: 412 LEQMQESGDVLPDVVTYSTVINGLCKSDML 441
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L + + + A K+ D + K PD Y +I L + G++ EA + + M++
Sbjct: 431 VINGLCKSDMLVEAQKLLDRMCKAGC-NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 489
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR-- 229
P+ TYT +I G K +A + E+M + PP + + ++ GL ++
Sbjct: 490 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEA 549
Query: 230 ----SKVKKDFEELFPEKHAY 246
++K E P+ Y
Sbjct: 550 QQLVQRMKDGRAECSPDAATY 570
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
A K +RKQ PD Y +I L + GK+ EA + E M++ D+ PD TY+ V
Sbjct: 373 AQKTLQEMRKQ-RKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTV 431
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K +A + + M K+ P+ + + ++ GL
Sbjct: 432 INGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLC 471
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K PDA+ Y LI L + K+ EA Q+ M PD Y+ +I F K G
Sbjct: 311 KTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 370
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A ++M K P+ + + ++ GL
Sbjct: 371 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 400
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 6/110 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PDA+ + +I A+A G ++ AM SM + P+ TYT +I F +
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVVTYTALIAAFARAKKL 195
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK---VKKDFEELF 240
+AM + E+M + PP + + +L+ L ++ + VKK E F
Sbjct: 196 EEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGF 245
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L ++ + EA ++ + M K PD TYT +I G K G +A +
Sbjct: 423 PDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYL 482
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M ++ P + + L+ GL
Sbjct: 483 LQGMKRAGCAPNVVTYTTLISGLC 506
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI A AR K+ EAM++ E MR+ P+ TY ++ K A ++
Sbjct: 177 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 236
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+ P + F L+ G
Sbjct: 237 VKKMIEGGFAPNVMTFNSLVDGFC 260
>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Cucumis sativus]
Length = 701
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ + + A +I+ + + P Y +I L + GK++E+M++W M+K + PD
Sbjct: 231 RKGDFVKANEIWKRLLTESSVYPSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDL 290
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
T++ +I G K G+ A ++++MI+S P+ + +L GL K+ K FE
Sbjct: 291 FTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFR----TGKLNKCFE 346
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 82/153 (53%), Gaps = 13/153 (8%)
Query: 79 VILGL---KRFKDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIF-DI 131
+I GL +RF D L++ ++ LK D++ ++LI+ L R E+ +A+ ++
Sbjct: 505 IINGLCKAERFSDAYLSLKEMLEEG----LKPDMITYSLLIDGLCRGEKVDMALNLWHQC 560
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I K+ +PD ++ +I L K++ A++++ MR+ + PD T+ ++ G K G
Sbjct: 561 INKR--LKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAG 618
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
+A+ I++ ++++ P+ + + I KGL
Sbjct: 619 DCVEALKIWDRILEAGLQPDIISYNITFKGLCS 651
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ PD + + +I L++ G N A +V++ M + L PD +TY ++ G + G
Sbjct: 282 KKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKL 341
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
++ M K+ + + + +L++GLL +
Sbjct: 342 NKCFELWNVMSKN-NCCNIVSYNMLIQGLLDN 372
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ PD Y LI ALA++G + +A+++++ M + PD Y +I GFL+ G
Sbjct: 177 ENGLNPDILSYGTLINALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFV 236
Query: 195 DAMNIYEDMI-KSPDPPEELPFRILLKGLL 223
A I++ ++ +S P + I++ GL
Sbjct: 237 KANEIWKRLLTESSVYPSVETYNIMINGLC 266
>gi|12324348|gb|AAG52140.1|AC022355_1 hypothetical protein; 19198-19943 [Arabidopsis thaliana]
Length = 233
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F+++ +D + P+ Y LI + +++E M+++ M + L ++ TYT +I+G
Sbjct: 1 MFELMISKDCF-PNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGL 59
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ G A I+++M+ PP+ + + ILL GL + L
Sbjct: 60 FQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDGLCKNGKL 100
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I + G EA ++ M+++ PDS TY +IR L+DG A +
Sbjct: 136 KPNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAE 195
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
+ ++M + + GL+ L ++ K F E+
Sbjct: 196 LIKEMRSCRFAGDASTY-----GLVTDMLHDGRLDKGFLEMLS 233
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-----------DLF--------- 174
D PD Y L+ L + GK+ +A+ V+ M+K DLF
Sbjct: 77 SDGVPPDIMTYNILLDGLCKNGKLEKALVVFGYMQKRMCKAGKVEDGWDLFCSLSLKGVK 136
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
P+ TYT +I GF K G +A ++ M + P+ + L++ L
Sbjct: 137 PNVVTYTTMISGFCKKGFKEEAYTLFRKMKEDGPLPDSGTYNTLIRAHL 185
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 49/85 (57%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I L +TG++ EA QV M+ + +FPD+ YT +I GF K G+ +
Sbjct: 319 KPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYK 378
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M + P+ + + ++ GL
Sbjct: 379 LFDEMKRKKIVPDFVTYTSMIHGLC 403
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+FD ++++ PD Y +I L + GK+ EA +++ M + L PD TYT +I G
Sbjct: 378 KLFDEMKRKK-IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K G +A +++ M++ P + + L+ GL
Sbjct: 437 YCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLC 473
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y LI L + G + +A+++ E M FPD+ TYT ++ + K G A A
Sbjct: 494 QPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHE 553
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ M+ P + F +L+ G +L
Sbjct: 554 LLRIMLDKGLQPTIVTFNVLMNGFCMSGML 583
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I++ L + R E A ++ +++ Q + PD +Y LI ++G ++ ++++
Sbjct: 327 SIISFLCKTGRVVE---AEQVLRVMKNQRIF-PDNVVYTTLISGFGKSGNVSVEYKLFDE 382
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M+++ + PD TYT +I G + G +A ++ +M+ P+E+ + L+ G
Sbjct: 383 MKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDG 436
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G+M EA + M ++ L P+ TYT ++ G K G A
Sbjct: 424 KPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANE 483
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELFPEKHAYDPPEEIFG 254
+ +M + P + L+ GL + VK D FP+ Y + +
Sbjct: 484 LLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYC 543
Query: 255 KL 256
K+
Sbjct: 544 KM 545
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 53/114 (46%), Gaps = 3/114 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + L+ M +++++ M + + PD+ TY +I+G K + +A +
Sbjct: 600 PNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFL 659
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+++M++ + L+KG + +K FEE+ H + +EI+
Sbjct: 660 HKEMVEKGFSLTAASYNSLIKGFYKRKKFE-EARKLFEEM--RTHGFIAEKEIY 710
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L R G ++EA ++ MR + P TY V+ GF K DA+N+
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M+ + P E + +L++G+
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGI 553
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++ +I+ K + QPD + Y LI + ++++A +V + MR +D PD+ TY +I
Sbjct: 143 AVRVMEILEK--FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI 200
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G A+ + ++ P + + IL++ +
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PDAY Y LI A R G+++ A++ E+M + PD Y V+ K+G
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ I+ + + P + + L
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +R +D + PD Y +I +L GK++ A++V + ++ P TYT +I
Sbjct: 177 ATRVLDRMRSKD-FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILI 235
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +G +A+ + ++M+ P+ + +++G+ ++
Sbjct: 236 EATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L R GK+ EAM + + M+++ L PD+ +Y +I F ++G A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
E MI P+ + + +L L +
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKN 416
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ + + D QP Y LI A G ++EA+++ + M L PD TY +
Sbjct: 211 LALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTI 269
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
IRG K+G A + ++ P+ + + ILL+ LL
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y +++ + ++ +A+ V ESM P+ TYT +I G G A+AM
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563
Query: 198 NIYEDMIKSPDPPEELPFRIL 218
+ D+++ D E F+ L
Sbjct: 564 ELANDLVR-IDAISEYSFKRL 583
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y ++ L + GK ++A++++ + + P+S +Y + G
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+++ +M+ + P+E+ + ++ L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLC 484
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 127 KIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ F+++R + +PD Y L+ AL GK E ++ M E P+ TY+ +I
Sbjct: 281 RAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+DG +AMN+ + M + P+ +
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D + + +PD + Y +I + + G ++ A ++ ++ + PD +Y ++
Sbjct: 247 ALKLMDEMLSRGL-KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILL 305
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK-----GLLPHPLLRSKVKKDFEEL 239
R L G + + M P + + IL+ G + + K+ K+ + L
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGL 364
Query: 240 FPEKHAYDP 248
P+ ++YDP
Sbjct: 365 TPDAYSYDP 373
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
DI ++ + +ER E+ + +K + ++ + PD Y LI + G +N A +++
Sbjct: 490 DIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLF 549
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ M+ + PDS TY +I G + G DA+ I+E M+K PE ++ ++
Sbjct: 550 KEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIM 603
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI G ++EA + + K D FP++ TY+ +I G K+G A +
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQH 429
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+++M K P + F L+ GL
Sbjct: 430 IFKEMEKLGCLPSVVTFNSLINGLC 454
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 137 WYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
WYQ PD +Y +I L++ G++ EA+ + M + L PD+ Y +I+GF
Sbjct: 325 WYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFC 384
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
G +A ++ ++ K P + IL+ G+ + L+ +K + F+E+ EK P
Sbjct: 385 DMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLI-NKAQHIFKEM--EKLGCLP 441
Query: 249 PEEIFGKL 256
F L
Sbjct: 442 SVVTFNSL 449
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L R + EA ++ M +E++ PD YT +IRG ++G +A+ + +M
Sbjct: 306 YGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMT 365
Query: 205 KSPDPPEELPFRILLKGLLPHPL------LRSKVKKDFEELFPEKHAYD 247
+ P+ + + L+KG LR ++ K + FP H Y
Sbjct: 366 ERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISK--HDCFPNNHTYS 412
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 6/121 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+ F ++R D +PD + + ++ L R A+ V+ M K +L PD TY +I
Sbjct: 147 AVESFGLMRDFDC-KPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILI 205
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K DA+ ++++M P ++ + I+L G L ++K D + LF +
Sbjct: 206 HGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSG-----LCQAKKIFDAQRLFSKMR 260
Query: 245 A 245
A
Sbjct: 261 A 261
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+ Y LI L R G+ +A++++E M K+ P+S TY ++ ++ + + A+
Sbjct: 557 HMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLAL 616
Query: 198 NIY 200
+++
Sbjct: 617 SVW 619
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +++ LI A AR G M++++ ++E M K+ + PD T++ VI F + G DAM
Sbjct: 397 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 456
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ MI + PP+ + L++G
Sbjct: 457 FNHMIDTGVPPDTAVYSCLIQG 478
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + L+ G M EA+ + +SM + PD TY ++ G+ K G DA+
Sbjct: 537 RPNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALT 596
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ DM+ + + I+L GL
Sbjct: 597 LFRDMLHKRVTLTSVSYNIILHGLF 621
Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F+ + KQ PD + +I A R G++++AM+ + M + PD+ Y+ +I+G
Sbjct: 421 MFEDMTKQG-VNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQ 479
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPF 215
A + DM+ PP + F
Sbjct: 480 CNRRDLVKAKELISDMLSKGIPPPCIKF 507
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 14/131 (10%)
Query: 118 RQE--ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
RQE E A+ + ++ P Y+ +I L + +A ++ SM K P
Sbjct: 696 RQEAKELFAAISTYGLV-------PTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTP 748
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
DS+ E+IR L G A A N + K PE +L+ + R +K
Sbjct: 749 DSRILNEIIRMLLNKGEVAKAGNYLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIK-- 806
Query: 236 FEELFPEKHAY 246
L PEK+ +
Sbjct: 807 ---LLPEKYRF 814
Score = 36.6 bits (83), Expect = 9.5, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + +I A+ + G+ EA +++ ++ L P TY +I +K+ S DA N++
Sbjct: 679 DILTFNIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLF 738
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
M KS P+ +++ LL
Sbjct: 739 SSMEKSSCTPDSRILNEIIRMLL 761
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + E +A+++ + + K+ D Y L+ L +G+ ++A ++ M K + P
Sbjct: 186 LCKNGELNIALELLNEMEKKGL-GADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINP 244
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D T+T +I F+K G+ +A +Y++MI+S P + + ++ GL H L KK
Sbjct: 245 DVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD-AKKT 303
Query: 236 FE-----ELFPEKHAYDPPEEIFGKL 256
F+ FP Y+ F K
Sbjct: 304 FDLMASKGCFPNVVTYNTLISGFCKF 329
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+ + Y+P+ +Y LI L + G++N A+++ M K+ L D TY ++ G
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILL 219
G +DA + DM+K P+ + F L+
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALI 253
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K FD++ + + P+ Y LI + ++E M++++ M E D TY +I
Sbjct: 300 AKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
G+ + G A++I+ M+ P+ + ILL GL + + S + K
Sbjct: 359 HGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVK 408
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 8/112 (7%)
Query: 125 AVKIFDIIR--------KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
AVK+ D+ + K D P +IY LI L + +M +A Q+++ M L P
Sbjct: 562 AVKLSDVGKGLELFNRMKHDRISPTVFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPS 621
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
TY +I G+ KDG+P + + E M P + F LLKGL ++
Sbjct: 622 LITYNTLIDGYCKDGNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMV 673
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+LI L +E L KIF + QPD +Y ++ A G M++A + + M ++
Sbjct: 1012 LLISLCTKEGIELTKKIFGEMS----LQPDLLVYNGVLHCYAVHGDMDKAFNLQKQMIEK 1067
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ D TY +I G LK G + ++ ++M PE + I++KG
Sbjct: 1068 SIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMKAREMEPEADTYDIIVKG 1117
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L+ GK+ EA + + ++ L PD TY +I G+ G+ + +YE+M
Sbjct: 940 YNTLIDGLSMNGKLAEAEDMLLEISRKGLKPDVFTYNSLISGYRFAGNVQRCIALYEEMK 999
Query: 205 KSPDPPEELPFRILL 219
S P + +L+
Sbjct: 1000 TSGIKPTLKTYHLLI 1014
>gi|255578371|ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530468|gb|EEF32352.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 554
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 49/85 (57%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I L ++GK+ A ++ M ++ + PD ++ +I GF K ++AM+
Sbjct: 392 SPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMH 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+YE+M P+E+ +++++ GL+
Sbjct: 452 LYEEMQNRGSYPDEVTYKLIIGGLI 476
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+T A K+F+ + Q PD + I A G N A ++ + M + L PD Y
Sbjct: 340 DTTSAYKLFEEM-GQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFY 398
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
T +I K G A +I+ DM++ P+ + F L+ G + S+ +EE+
Sbjct: 399 TTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRV-SEAMHLYEEM- 456
Query: 241 PEKHAYDPPEEIFGKL 256
+ +Y P+E+ KL
Sbjct: 457 QNRGSY--PDEVTYKL 470
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y L+ + + ++A + + D +Y +I+ F K G A
Sbjct: 287 EPDVYSYNQLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSAYK 346
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++E+M + PP+ + F I +K L
Sbjct: 347 LFEEMGQKGIPPDVVTFTIFIKAFL 371
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI + +++EAM ++E M+ +PD TY +I G +++ + A
Sbjct: 427 SPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIACM 486
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M+ + + L++G
Sbjct: 487 VWGQMMDKGFTLDRAIAQTLIRG 509
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 50/113 (44%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A+++ L + LA ++ + K + +Y LI R G++++A + MR+
Sbjct: 189 AIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQAIKSFMRR 248
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD TY + F + DA + + M +S P+ + LLKG+
Sbjct: 249 NGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYNQLLKGIC 301
Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + + + L G+++ A++V+E + K PD TYT +I G K A+
Sbjct: 112 PDIWAFNIYLHLLFVEGRIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQF 171
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ DMI P+ ++ GL
Sbjct: 172 WRDMIHKGFSPDNKACGAIVVGLC 195
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y L+ L R GK+ A V + M K+ DL PD TYT ++RG+ +A
Sbjct: 200 EPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEA 259
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++E+M+ P ++ + L+KGL
Sbjct: 260 LVVFEEMVSRGLKPNDITYNTLIKGLC 286
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 64/130 (49%), Gaps = 10/130 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
A+K+F ++ K P + L++ L + G+ N A V++ M + PD+ T+ +
Sbjct: 116 AIKLFSLM-KSSGVSPSVITFNSLLLILLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNIL 174
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDF 236
IRGF K+ + +++M + P+ + + L+ GL + H +++ VKK
Sbjct: 175 IRGFCKNSMVDEGFRFFKEMSRFNCEPDVVTYNTLVDGLCRAGKVRIAHNVVKGMVKK-M 233
Query: 237 EELFPEKHAY 246
++L P+ Y
Sbjct: 234 KDLSPDVVTY 243
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + +T A ++F + K+ P +Y K LII + G ++ M + D P
Sbjct: 398 LCKNGKTHKAERVFRQLMKKGTQDPPSY--KTLIIGHCKEGTFEAGYKLLLFMLRRDYVP 455
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
D +TY +I GFL+ G P A E M+KS P+ F +L LL + R
Sbjct: 456 DFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSELLKNDFAR 509
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y L+ A G +EA+++++ M++ + PDS TY+ +IR + G A
Sbjct: 307 FVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERAE 366
Query: 198 NIY-----EDMIKSPDPPEELP------FRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
++ ED++ D L F L K H K ++ F +L +K
Sbjct: 367 QLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTH-----KAERVFRQLM-KKGTQ 420
Query: 247 DPPE 250
DPP
Sbjct: 421 DPPS 424
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + Y LI +LA+ G M++A+++++ M + + PD Y +I GF K G +A
Sbjct: 180 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 239
Query: 198 NIYEDMIKSPDPPEELP-FRILLKGLL 223
I+E ++K P +P + +++ GL
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLC 266
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ + + A +I++ + K P+ Y +I L + GK +E+ ++W M+K + D
Sbjct: 231 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G G+ A +Y++M ++ P+ + + +L G L
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 336
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + Y +I L R G+++E V + M K P+ VI GF++ DA+ +
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M+ P + + L+ GL
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGL 509
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y LI L +G ++ A +V++ M + + PD Y ++ G+L+ G + + ++
Sbjct: 289 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ M K + + IL++GL + + + EL PEK
Sbjct: 349 KVMEKE-GCRTVVSYNILIRGLFENAKVDEAI--SIWELLPEK 388
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++ +I L +GK+ +A+Q++ M++ P+ T+ ++ GF K A
Sbjct: 565 FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERAS 624
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
I++ +++ P+ + + I LKGL
Sbjct: 625 KIWDHILQYGPQPDIISYNITLKGLC 650
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ PD +Y ++ R G++ E +++W+ M KE +Y +IRG ++
Sbjct: 318 ENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVD 376
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+A++I+E + + + + + +L+ GL + L
Sbjct: 377 EAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLN 411
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L K++EA+ +WE + ++D DS TY ++ G K+G A++I E+
Sbjct: 362 YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 421
Query: 205 KSPDPPEELPFRILLKGLL 223
+ + ++ GL
Sbjct: 422 NGRGDLDTFAYSSMINGLC 440
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 40/85 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++P+ Y L+ L + K++ A+ +W ++ PD + + +I G G DA+
Sbjct: 530 WKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL 589
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+Y +M + P + L++G
Sbjct: 590 QLYSEMKQRKCVPNLVTHNTLMEGF 614
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ ++ +I R K+ +A++ + +M + FP TY +I G K ++A
Sbjct: 461 KPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 520
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M+ P + + +L+ GL
Sbjct: 521 LVKEMLHKGWKPNMITYSLLMNGLC 545
>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
micrantha]
Length = 431
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+ A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLC 293
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCC 328
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 363
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ A ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDG 256
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD+ TYT +I F K G +
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMHRDGHAPSVVTYNVLMNG 431
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L R G ++EA ++ MR + P TY V+ GF K DA+N+
Sbjct: 471 PDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINV 530
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M+ + P E + +L++G+
Sbjct: 531 LESMVGNGCRPNETTYTVLIEGI 553
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++ +I+ K + QPD + Y LI + ++++A +V + MR +D PD+ TY +I
Sbjct: 143 AVRVMEILEK--FGQPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI 200
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G A+ + ++ P + + IL++ +
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATM 239
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ + + D QP Y LI A G ++EA+++ + M L PD TY +
Sbjct: 211 LALKVLNQLL-SDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTI 269
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
IRG K+G A + ++ P+ + + ILL+ LL
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALL 309
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PDAY Y LI A R G+++ A++ E+M + PD Y V+ K+G
Sbjct: 360 KEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKA 419
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ I+ + + P + + L
Sbjct: 420 DQALEIFGKLGEVGCSPNSSSYNTMFSAL 448
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +R +D + PD Y +I +L GK++ A++V + ++ P TYT +I
Sbjct: 177 ATRVLDRMRSKD-FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILI 235
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +G +A+ + ++M+ P+ + +++G+ ++
Sbjct: 236 EATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMV 279
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L R GK+ EAM + + M+++ L PD+ +Y +I F ++G A+
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
E MI P+ + + +L L +
Sbjct: 391 LETMISDGCLPDIVNYNTVLATLCKN 416
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y +++ + ++ +A+ V ESM P+ TYT +I G G A+AM
Sbjct: 504 FHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAM 563
Query: 198 NIYEDMIKSPDPPEELPFRIL 218
+ D+++ D E F+ L
Sbjct: 564 ELANDLVR-IDAISEYSFKRL 583
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/89 (19%), Positives = 42/89 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y ++ L + GK ++A++++ + + P+S +Y + G
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+++ +M+ + P+E+ + ++ L
Sbjct: 456 RALHMILEMMSNGIDPDEITYNSMISCLC 484
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 127 KIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ F+++R + +PD Y L+ AL GK E ++ M E P+ TY+ +I
Sbjct: 281 RAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILI 340
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+DG +AMN+ + M + P+ +
Sbjct: 341 TTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D + + +PD + Y +I + + G ++ A ++ ++ + PD +Y ++
Sbjct: 247 ALKLMDEMLSRGL-KPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILL 305
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK-----GLLPHPLLRSKVKKDFEEL 239
R L G + + M P + + IL+ G + + K+ K+ + L
Sbjct: 306 RALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKE-KGL 364
Query: 240 FPEKHAYDP 248
P+ ++YDP
Sbjct: 365 TPDAYSYDP 373
>gi|15222150|ref|NP_172763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200670|sp|Q9SAD9.1|PPR40_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g13040, mitochondrial; Flags: Precursor
gi|4850387|gb|AAD31057.1|AC007357_6 F3F19.6 [Arabidopsis thaliana]
gi|332190841|gb|AEE28962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ + +A K+ D + + PD Y ++ L ++G +++A V+ M + ++ PD+
Sbjct: 372 REGNSSVAKKLLDQMTELGL-SPDRIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDA 430
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y +I G + G +A+ ++EDM P+EL F+ ++ GL+ L + K
Sbjct: 431 ISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYK 486
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 39/65 (60%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L R+G++ EA++++E M+ ++ PD T+ +I G ++ + A +
Sbjct: 428 PDAISYNSLISGLCRSGRVTEAIKLFEDMKGKECCPDELTFKFIIGGLIRGKKLSAAYKV 487
Query: 200 YEDMI 204
++ M+
Sbjct: 488 WDQMM 492
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + + + L R K+ A+Q + M + PD +YT +I G + G DA+ I
Sbjct: 112 PDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVSYTILINGLFRAGKVTDAVEI 171
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+S P+ L+ GL
Sbjct: 172 WNAMIRSGVSPDNKACAALVVGLC 195
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 12/117 (10%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y LI R +A +++E MR++ + + TYT +I+ FL++G+ + A +
Sbjct: 323 CDVVSYSTLIETFCRASNTRKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKL 382
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF--------EELFPEKHAYDP 248
+ M + P+ RI +L H V K + E+ P+ +Y+
Sbjct: 383 LDQMTELGLSPD----RIFYTTILDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNS 435
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R+ + AV+ F Q +PD Y LI L R GK+ +A+++W +M + + P
Sbjct: 124 LCRENKVGFAVQTF-FCMVQRGREPDVVSYTILINGLFRAGKVTDAVEIWNAMIRSGVSP 182
Query: 176 DSQTYTEVIRGFL 188
D++ ++ G
Sbjct: 183 DNKACAALVVGLC 195
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L +Q AV++ + ++ Y + +IY LI L + GK EAM +W M ++ P
Sbjct: 337 LVKQRRATDAVRLLSSMEERG-YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKP 395
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ Y+ ++ G ++G P +A I MI S P + L+KG L V+
Sbjct: 396 NIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y L+ L R GK NEA ++ M P++ TY+ +++GF K G +A+
Sbjct: 394 KPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M K+ + + +L+ GL
Sbjct: 454 VWKEMDKTGCSRNKFCYSVLIDGLC 478
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+AY Y L+ +TG EA+QVW+ M K + Y+ +I G G +AM +
Sbjct: 430 PNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMV 489
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M+ P+ + + ++KGL + + +K E L E+ P
Sbjct: 490 WSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L + ER +E +L + D ++ + P IY LI L + G + ++ ++M +
Sbjct: 232 LCKEERIDEAVL---LLDEMQSEGC-SPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
P+ TY +I G G A+++ E M+ S P ++ + L+ GL+
Sbjct: 288 CVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLV 338
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ L + +++EA+ + + M+ E P Y +I G K G +
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKL 279
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P E+ + L+ GL
Sbjct: 280 VDNMFLKGCVPNEVTYNTLIHGLC 303
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + + +A+++ SM + + Y+ +I G K+G +AM++
Sbjct: 325 PNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSL 384
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M + P + + +L+ GL
Sbjct: 385 WRKMAEKGCKPNIVVYSVLVDGLC 408
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L GK+++A+ + E M P+ TY +I G +K DA+ +
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M + + + +L+ GL
Sbjct: 350 LSSMEERGYHLNQHIYSVLISGL 372
>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g65820
gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 129 FDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+D++R ++ ++P+A Y LI AL + +M EAM+V+ M + + D TYT ++ G
Sbjct: 307 YDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSG 366
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
F K G + +DMIK P EL + H ++ + K+ FEE
Sbjct: 367 FCKWGKIDKCYIVLDDMIKKGLMPSELTY--------MHIMVAHEKKESFEECL 412
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+ +R + + + + L+ R GKM EA V M + PD YT ++
Sbjct: 237 AAKLFEDMRMR--FPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLL 294
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ G ADA ++ DM + P + +L++ L
Sbjct: 295 SGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALC 333
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y +L+ A GKM +A + MR+ P++ YT +I+ K +AM
Sbjct: 283 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 342
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + + + + L+ G
Sbjct: 343 KVFVEMERYECEADVVTYTALVSGFC 368
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ E++E +++ + +R+ + Y PD IY +I + G++ EA+++W M +
Sbjct: 398 IMVAHEKKESFEECLELMEKMRQIE-YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEEN 456
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
L P T+ +I G G +A + +++M+
Sbjct: 457 GLSPGVDTFVIMINGLASQGCLLEASDHFKEMV 489
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 13/117 (11%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADA 196
++PD Y++ L+ AL + G + +A +++E MR FP + + +T ++ G+ + G +A
Sbjct: 214 FEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMR--FPVNLRYFTSLLYGWCRVGKMMEA 271
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAY 246
+ M ++ P+ + + LL G + LLR ++ FE P + Y
Sbjct: 272 KYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFE---PNANCY 325
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+K P Y +++A + E +++ E MR+ + PD Y VIR K
Sbjct: 382 DMIKKG--LMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 439
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G +A+ ++ +M ++ P F I++ GL L
Sbjct: 440 LGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCL 478
>gi|302766721|ref|XP_002966781.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
gi|300166201|gb|EFJ32808.1| hypothetical protein SELMODRAFT_407940 [Selaginella moellendorffii]
Length = 234
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK 134
E + V +K+ K D ++L+ ++T V RLL +++++ R +E LA IF ++RK
Sbjct: 52 ETVSVATMMKKAKGDPDRLKSVLRTSVSRLLTKELMSLFWVFVRAKEMDLAELIFGLVRK 111
Query: 135 QDWYQPDAYIYKDLIIALAR---TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ WY+P A +Y LI A + + M Q+ + +E L P+ ++ I+ +
Sbjct: 112 ESWYKPQASLYLHLITAYSERLDSKAMERIFQLLDESEEEGLIPNVFSFQTPIQACVSSN 171
Query: 192 SPADAMNIYEDMIKSP 207
M +Y M S
Sbjct: 172 DFDACMRLYNRMHAST 187
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++ +A +++E M + L PD TYT +I G K+G+ A+++
Sbjct: 433 PDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSL 492
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++MIK P+ + + +L+ GL
Sbjct: 493 HDEMIKKGVLPDVVTYSVLIDGL 515
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++ ++R + +P + ++ L + G+M +A ++++ M +E L PD
Sbjct: 202 RAGEVDAAERLVGVMR-EGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDG 260
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+Y ++ G+ K G +A+ ++ +M + P+ + F L+ H + R+
Sbjct: 261 VSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLI-----HAMCRA 308
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI + G+M+EA ++ M + + PD TY+ ++ G+ K G A
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M+K P+ + + L++GL
Sbjct: 422 LNRKMLKKGVVPDAITYSSLIRGLC 446
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y ++ + G + A ++ M K+ + PD+ TY+ +IRG ++ DA
Sbjct: 397 KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACE 456
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++E M++ P+E + L+ G
Sbjct: 457 LFEKMLQLGLQPDEFTYTTLIDG 479
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E L V + D +R P+ Y L+ A R G+++ A ++ MR+ + P
Sbjct: 169 QREEALGV-VGDDMRGAGC-APNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLV 226
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
T+ V+ G K G DA ++++M + P+ + + L+ G L
Sbjct: 227 TFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCL 276
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L + R E+ A K+FD + ++ PD Y L+ + G ++EA+ V+ M
Sbjct: 231 VVNGLCKAGRMED---ARKMFDEMAREGL-TPDGVSYNTLVSGYCKAGCLHEALAVFAEM 286
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ + PD T+T +I + G+ A+ + M + E F L+ G + L
Sbjct: 287 AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFL 346
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD + LI A+ R G + A+ + MR+ L + T+T +I GF ++G
Sbjct: 288 QKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFLD 347
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DA+ ++M + P + + +L+ G
Sbjct: 348 DALLAMKEMRECRIQPSVVCYNVLING 374
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q QPD + Y LI + G + +A+ + + M K+ + PD TY+ +I G K
Sbjct: 463 QLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTK 522
Query: 195 DAMNI-----YED 202
+A + YED
Sbjct: 523 EAQRLLFKLYYED 535
>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
Length = 741
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+ +Y LI TG + A+ +++ M+ + P+ +TYT++I GF K G AM
Sbjct: 210 FVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAM 269
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+Y MI++ P + + L++G
Sbjct: 270 VLYSRMIEAGLAPNVVTYTTLIQG 293
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q + + IY +I AL ++GK + A + + + E PD+ Y+ +I G ++
Sbjct: 347 QKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLL 406
Query: 195 DAMNIYEDMIKSPDPPEELPFRILL 219
+A+++ DMI+S +PF IL+
Sbjct: 407 EAISLLNDMIESGVQANAVPFTILI 431
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ IF ++ + P+ Y LI ++GK+ AM ++ M + L P+ TYT +
Sbjct: 232 LAIDIFKGMQSKGCL-PNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTL 290
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
I+G +G A + M P E +L+ L H
Sbjct: 291 IQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKH 332
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ L +++R EE K F + + P +Y +I R + EA++ +SM
Sbjct: 587 IRCLSKVDRLEEA----KSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALRFLDSMV 642
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
K + P ++Y +I ++GS A +I+ D++ +E+ ++IL+ G LL+
Sbjct: 643 KRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKILIDG-----LLQ 697
Query: 230 SKVKKDFEEL--FPEKHAYDPPEEIFGKL 256
D L F E+ P I+ +L
Sbjct: 698 KGNTADCSRLLSFMEEQNCRPGSAIYSRL 726
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y I + + G+M +A + M + P+ TY +I+G+ G + A +
Sbjct: 456 KPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFS 515
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++MI + P + + +LL LL
Sbjct: 516 SLKNMIDNGCKPNDESYTVLLGLLL 540
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 10/114 (8%)
Query: 129 FDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+D++R ++ ++P+A Y LI AL + +M EAM+V+ M + + D TYT ++ G
Sbjct: 283 YDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSG 342
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
F K G + +DMIK P EL + H ++ + K+ FEE
Sbjct: 343 FCKWGKIDKCYIVLDDMIKKGLMPSELTY--------MHIMVAHEKKESFEECL 388
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 17/103 (16%)
Query: 138 YQPDAYIYKDLIIALA-----------------RTGKMNEAMQVWESMRKEDLFPDSQTY 180
++PD Y++ L+ AL R GKM EA V M + PD Y
Sbjct: 207 FEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYVLVQMNEAGFEPDIVDY 266
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T ++ G+ G ADA ++ DM + P + +L++ L
Sbjct: 267 TNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALC 309
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y +L+ A GKM +A + MR+ P++ YT +I+ K +AM
Sbjct: 259 FEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAM 318
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + + + + L+ G
Sbjct: 319 KVFVEMERYECEADVVTYTALVSGFC 344
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ E++E +++ + +R+ + Y PD IY +I + G++ EA+++W M +
Sbjct: 374 IMVAHEKKESFEECLELMEKMRQIE-YHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEEN 432
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
L P T+ +I G G +A + +++M+
Sbjct: 433 GLSPGVDTFVIMINGLASQGCLLEASDHFKEML 465
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+K P Y +++A + E +++ E MR+ + PD Y VIR K
Sbjct: 358 DMIKKG--LMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 415
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G +A+ ++ +M ++ P F I++ GL L
Sbjct: 416 LGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCL 454
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 7/137 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++R Q WY+P IY LI L + + +A +++++M E P+ ++YT ++
Sbjct: 134 ALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGCAPNLESYTALV 193
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVKKDFEELF--- 240
+ + GS A ++ + M +P P+ + IL+K L H KVK ++
Sbjct: 194 SAYSRSGSFDRAFSLLDRMKATPGCRPDVQTYSILIKSCL-HAYDFDKVKDLLADMACGG 252
Query: 241 --PEKHAYDPPEEIFGK 255
P Y+ + +GK
Sbjct: 253 IRPNTVTYNTLVDAYGK 269
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + Y LI +LA+ G M++A+++++ M + + PD Y +I GF K G +A
Sbjct: 180 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 239
Query: 198 NIYEDMIKSPDPPEELP-FRILLKGLL 223
I+E ++K P +P + +++ GL
Sbjct: 240 EIWERLLKGPSVYPNIPSYNVMINGLC 266
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 55/106 (51%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ + + A +I++ + K P+ Y +I L + GK +E+ ++W M+K + D
Sbjct: 231 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 290
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G G+ A +Y++M ++ P+ + + +L G L
Sbjct: 291 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 336
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + Y +I L R G+++E V + M K P+ VI GF++ DA+ +
Sbjct: 428 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFF 487
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M+ P + + L+ GL
Sbjct: 488 GNMVSKGCFPTVVTYNTLINGL 509
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y LI L +G ++ A +V++ M + + PD Y ++ G+L+ G + + ++
Sbjct: 289 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ M K + + IL++GL + + + EL PEK
Sbjct: 349 KVMEKE-GCRTVVSYNILIRGLFENAKVDEAI--SIWELLPEK 388
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD +Y ++ R G++ E +++W+ M KE +Y +IRG ++ +A++
Sbjct: 322 SPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAIS 380
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
I+E + + + + + +L+ GL + L
Sbjct: 381 IWELLPEKDCCADSMTYGVLVHGLCKNGYLN 411
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L K++EA+ +WE + ++D DS TY ++ G K+G A++I E+
Sbjct: 362 YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 421
Query: 205 KSPDPPEELPFRILLKGLL 223
+ + ++ GL
Sbjct: 422 NGRGDLDTFAYSSMINGLC 440
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ L + ER E VK +++ K ++P+ Y L+ L + K++ A+ +W
Sbjct: 505 LINGLSKAERFSEAYALVK--EMLHKG--WKPNMITYSLLMNGLCQGKKLDMALNLWCQA 560
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ PD + + +I G G DA+ +Y +M + P + L++G
Sbjct: 561 LEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGF 614
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ ++ +I R K+ +A++ + +M + FP TY +I G K ++A
Sbjct: 461 KPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 520
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M+ P + + +L+ GL
Sbjct: 521 LVKEMLHKGWKPNMITYSLLMNGLC 545
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 39/69 (56%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++ +I L +GK+ +A+Q++ M++ P+ T+ ++ GF K A
Sbjct: 565 FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRDFERAS 624
Query: 198 NIYEDMIKS 206
I++ +++S
Sbjct: 625 KIWDHILQS 633
>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
micromera]
Length = 431
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNXLIYGLC 293
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAXSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDG 256
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M P+++ + L+ G
Sbjct: 305 IXEMSMKGLKPDKITYTTLIDGCC 328
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G+ A MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLC 363
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD+ TYT +I F K G +
Sbjct: 351 DDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD + + P+ Y Y L+ LAR G ++EA+ M+ PD +Y ++
Sbjct: 491 AVDLFDEMNRLGC-TPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIIL 549
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
K G P AM + +M +S P+ + + +L G L H + + K +E+
Sbjct: 550 NALAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVL-GALSHAGMFEEAAKLMKEMNAIGF 608
Query: 245 AYD 247
YD
Sbjct: 609 DYD 611
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R Q + +PD + Y +LI L + G+++EA + MR+E PD+ +I
Sbjct: 280 ALGLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMI 338
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G DA+ ++E+M P + + ++K L S++ FE +
Sbjct: 339 NFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKALFESKSRVSEISSWFERM 393
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 5/131 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L RQ+ I + K + QP A IY L+ L + ++ A+ ++E M
Sbjct: 232 LISAFCKLGRQDSAIWLLNEM----KDNGMQPTAKIYTMLMALLFKLDNVHGALGLFEEM 287
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
R + PD TYTE+IRG K G +A N + +M + P+ + ++ L L
Sbjct: 288 RHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRL 347
Query: 229 RSKVKKDFEEL 239
+K FEE+
Sbjct: 348 DDAIKL-FEEM 357
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G+ + A+ + M+ + P ++ YT ++ K + A+ +
Sbjct: 224 PDTVTYSALISAFCKLGRQDSAIWLLNEMKDNGMQPTAKIYTMLMALLFKLDNVHGALGL 283
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P+ + L++GL
Sbjct: 284 FEEMRHQYCRPDVFTYTELIRGL 306
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + Y LI +LA+ G M++A+++++ M + + PD Y +I GF K G +A
Sbjct: 155 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 214
Query: 198 NIYEDMIKSPDPPEELP-FRILLKGL 222
I+E ++K P +P + +++ GL
Sbjct: 215 EIWERLLKGPSVYPNIPSYNVMINGL 240
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 55/106 (51%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ + + A +I++ + K P+ Y +I L + GK +E+ ++W M+K + D
Sbjct: 206 KKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDL 265
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G G+ A +Y++M ++ P+ + + +L G L
Sbjct: 266 YTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYL 311
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 48/85 (56%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++ +I L +GK+ +A+Q++ M++ + P+ T+ ++ GF K A
Sbjct: 540 FKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERAS 599
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
I++ +++ P+ + + I LKGL
Sbjct: 600 KIWDHILQYGLQPDIISYNITLKGL 624
Score = 43.9 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + Y +I L R G+++E V + M K P+ VI GF++ DA+ +
Sbjct: 403 DTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFF 462
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M+ P + + L+ GL
Sbjct: 463 GNMVSKGCFPTVVTYNTLINGL 484
Score = 43.9 bits (102), Expect = 0.071, Method: Composition-based stats.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y LI L +G ++ A +V++ M + + PD Y ++ G+L+ G + + ++
Sbjct: 264 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 323
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ M K + + IL++GL + + + EL PEK
Sbjct: 324 KVMEKE-GCRTVVSYNILIRGLFENAKVDEAIS--IWELLPEK 363
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L K++EA+ +WE + ++D DS TY ++ G K+G A++I E+
Sbjct: 337 YNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAE 396
Query: 205 KSPDPPEELPFRILLKGL 222
+ + ++ GL
Sbjct: 397 NGRGDLDTFAYSSMINGL 414
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y+ +I R K+ +A++ + +M + FP TY +I G K ++A
Sbjct: 436 KPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYA 495
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ ++M++ P + + +L+ GL
Sbjct: 496 LVKEMLQKGWKPNMITYSLLMNGL 519
Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y ++ R G++ E +++W+ M KE +Y +IRG ++ +A++I
Sbjct: 298 PDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIRGLFENAKVDEAISI 356
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E + + + + + +L+ GL
Sbjct: 357 WELLPEKDCCADSMTYGVLVHGL 379
Score = 40.0 bits (92), Expect = 0.95, Method: Composition-based stats.
Identities = 20/88 (22%), Positives = 41/88 (46%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q ++P+ Y L+ L + K++ A+ +W ++ PD + + +I G G
Sbjct: 502 QKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVE 561
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA+ +Y +M + P + L++G
Sbjct: 562 DALQLYSEMKQRNCVPNLVTHNTLMEGF 589
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ ++P+ +Y LI G+M A++V+E M P+ +TYTE+I G K G
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
AM ++ M+++ P + + L++G
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQG 291
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
L V + DI +Q D IY I L R ++ EA + M+ +L P YT +
Sbjct: 558 LQVLLEDITERQLPLAAD--IYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSI 615
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
I + DA+ + + M KS P +RI++ L R+ K+ F +L ++
Sbjct: 616 IDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRT-AKEVFGDLLLKE 674
Query: 244 HAYD 247
YD
Sbjct: 675 SNYD 678
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+ + + P+ Y +LI L ++GK+ AM ++ M + L P+ TYT +I
Sbjct: 231 ALKVFEGM-DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G +G A + M + P + F +L+ L
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC 328
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+Y Y ++ R G + A +V+ M + TYT ++ G L G +AM +
Sbjct: 105 PDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAV 164
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M P+ + ++ GL
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLC 188
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+VLI+ + E + ++F + + + +Y LI L +TGK++ A ++ + M
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
E PD+ +Y+ +I G + + A + EDM++ + + I++ L+
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELV 433
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
KIFD + PD Y + + G+M +A + M +FP+ TY +IRG
Sbjct: 443 KIFDKMIATG-INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ G + A + +E M+ P E + +LL+
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLR 535
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
A+ Y L+ L G + EAM V+ MR + PD+ Y ++ G + G
Sbjct: 142 AFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAG 191
>gi|302810470|ref|XP_002986926.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
gi|300145331|gb|EFJ12008.1| hypothetical protein SELMODRAFT_125134 [Selaginella moellendorffii]
Length = 458
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 70/136 (51%), Gaps = 1/136 (0%)
Query: 89 DEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
+E L+K + +LL ++ +L + ++ + A+K+F+++R Q WYQP A Y +
Sbjct: 4 EEASLRKSMARKASKLLPSSLLDILSDRIQRGQWEAALKVFELLRSQQWYQPYAGTYIRM 63
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
+ L + + +EA ++++M + P + +T ++ + + + AM + + M +P
Sbjct: 64 LEMLGKCKRPDEAASLFQTMLADGCGPSREAFTALMSAYTRSNLMSTAMEVLQAMNATPH 123
Query: 209 -PPEELPFRILLKGLL 223
P+ + +L+K
Sbjct: 124 CSPDVFTYSLLIKSCC 139
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
YQ DA Y LI A R G+ + ++ + SM+ + PDS TY +I + K G
Sbjct: 267 YQVDAVTYNILINAYGRAGRKTQMLKTFTSMKCGGVRPDSVTYCTLINFYGKFG 320
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ +L +GK+ +AM+V + M + D +PD TYT +I +D AM
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMK 260
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++M P+ + + +L+ G+ L +K
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D + ++D Y PD Y LI A R + +AM++ + MR PD TY ++
Sbjct: 223 AMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLV 281
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G K+G +A+ DM S P + I+L+ +
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A+K+ D +R +D +PD Y L+ L+R GK++EA++ + +
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDL-KPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P++ T+ ++ G K A++ MI P E + IL++GL
Sbjct: 513 MGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGL 564
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I + + + P Y +I LA+ GK +A+++ + MR +DL PD+ TY+ ++
Sbjct: 433 AVEILNQLSSKGC-SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G ++G +A+ + + + P + F ++ GL
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC 530
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ DI+ K + QP++ Y L+ + KM+ A++ E M +PD TY ++
Sbjct: 362 RAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG DA+ I + P + + ++ GL
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R +T A KI +++ PD Y +I + G++N A+ V + M + PD
Sbjct: 149 RMGKTRKAAKILEVLEGSGAV-PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDV 204
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY ++R G AM + + M++ P+ + + IL++
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIE 247
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + GK+ +A+++ + + P TY VI G K G A+ +
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M P+ + + L+ GL
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGL 494
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R GK +A ++ E + PD TY +I G+ K G +A+++
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSV 194
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ M SPD + + +L+ L L+
Sbjct: 195 LDRMSVSPDV---VTYNTILRSLCDSGKLK 221
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++RK + P + LI L R G + A+ + E M K P+S +Y ++ GF K
Sbjct: 334 DMLRK--GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCK 391
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ A+ E M+ P+ + + +L L
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALC 425
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L RTG++ E + E+M PD T +IRGF + G A I E + S P+
Sbjct: 112 LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPD 171
Query: 212 ELPFRILLKG 221
+ + +++ G
Sbjct: 172 VITYNVMISG 181
>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
Length = 496
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
K+ V+ L ++ I A FD ++ D ++PD +Y L+ R G ++EA +V+
Sbjct: 181 KIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVF 238
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
M+ + P+ TY+ VI + G A +++ +MI P + F L++
Sbjct: 239 GEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMR 293
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y Y +I AL R+G++ A V+ M P++ T+ ++R +K G +
Sbjct: 247 QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 306
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y M + PP+ + + L++ L VK
Sbjct: 307 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 341
>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
hermannioides]
Length = 417
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 195 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAME 254
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 255 IYKRMLSQSLLPDLITYNTLIYGLC 279
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 231 PNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 290
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 291 IDEMSMKGLKPDKFTYTTLIDGCC 314
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 146 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 203
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 204 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 242
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 251 LAMEIYKRMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 309
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 310 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 349
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M DL PD+ TYT +I F K G
Sbjct: 331 QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVW 390
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 391 KGSKLLKEMQRDGHAPSVVTYNVLMNG 417
>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rubella]
Length = 394
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G A+
Sbjct: 191 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALE 250
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 251 IYKQMLSQSLLPDLITYNTLIYGLC 275
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 142 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 199
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 200 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 238
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ A+++++ M + L PD TY +I G K G A ++
Sbjct: 227 PNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 286
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 287 IDEMSMKGLKPDKITYTALIDGCC 310
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 247 LALEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTAL 305
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 306 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 345
>gi|224069810|ref|XP_002303045.1| predicted protein [Populus trichocarpa]
gi|222844771|gb|EEE82318.1| predicted protein [Populus trichocarpa]
Length = 388
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+L+ +F+++R+Q WY+P A +Y LI+ L + + ++A Q++++M E ++YT
Sbjct: 11 LLSRLVFELLREQLWYRPYAGMYVKLIVMLGKCKQPDKAHQLFQAMIDEGCAVTHESYTA 70
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
++ + + G A +I E+M +PD P+ + IL+K L
Sbjct: 71 LLSAYGRSGLFDKAFSIMEEMKNTPDCRPDVHTYSILIKSCL 112
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ ++P+ +Y LI G+M A++V+E M P+ +TYTE+I G K G
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
AM ++ M+++ P + + L++G
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQG 291
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+Y Y ++ R G + A +V+ M + TYT ++ G L G +AM +
Sbjct: 105 PDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTV 164
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M P+ + ++ GL
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLC 188
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+ + + P+ Y +LI L ++GK+ AM ++ M + L P+ TYT +I
Sbjct: 231 ALKVFEGM-DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G +G A + M + P + F +L+ L
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC 328
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+VLI+ + E + ++F + + + +Y LI L +TGK++ A ++ + M
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
E PD+ +Y+ +I G + + A + EDM++ + + I++ L+
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELV 433
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
KIFD + PD Y + + G+M +A + M +FP+ TY +IRG
Sbjct: 443 KIFDKMIATG-INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ G + A + +E M+ P E + +LL+
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLR 535
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
A+ Y L+ L G + EAM V+ MR + PD+ Y ++ G + G
Sbjct: 142 AFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAG 191
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ ++P+ +Y LI G+M A++V+E M P+ +TYTE+I G K G
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
AM ++ M+++ P + + L++G
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQG 291
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+ + + P+ Y +LI L ++GK+ AM ++ M + L P+ TYT +I
Sbjct: 231 ALKVFEGM-DGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALI 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G +G A + M + P + F +L+ L
Sbjct: 290 QGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC 328
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+Y Y ++ R G + A +V+ M + TYT ++ G L G +AM +
Sbjct: 105 PDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAV 164
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M P+ + ++ GL
Sbjct: 165 FVGMRADSCAPDTHVYATMVHGLC 188
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+VLI+ + E + ++F + + + +Y LI L +TGK++ A ++ + M
Sbjct: 321 SVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMIS 380
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
E PD+ +Y+ +I G + + A + EDM++ + + I++ L+
Sbjct: 381 EGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELV 433
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
KIFD + PD Y + + G+M +A + M +FP+ TY +IRG
Sbjct: 443 KIFDKMIATG-INPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ G + A + +E M+ P E + +LL+
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLR 535
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
A+ Y L+ L G + EAM V+ MR + PD+ Y ++ G + G
Sbjct: 142 AFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAG 191
>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD +Y +I L R + +A ++W M ++ P+ TY +I G+ K G+ +A
Sbjct: 363 YAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAW 422
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+Y +M + + + +++KGL H + K+ +LF E
Sbjct: 423 KMYREMCDKGYGEKTVSYNVMIKGLCSHGKI-----KEAHDLFEE 462
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP A Y LI L + G M A +W+ M+ + P T+ +I GF K G + M
Sbjct: 504 QPSAASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGME 563
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
M++S P++ F L++ L
Sbjct: 564 WLTTMLRSKLRPQKKSFESLIQCL 587
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y++++ L + GK E +V++ ++ PD YT +I G + DA +
Sbjct: 330 PDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKL 389
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +MI+ P E + ++ G
Sbjct: 390 WFEMIQKGFLPNEYTYNAMIHG 411
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y Y +I L GK+ EA ++E M + + + TY ++RGF K+G +
Sbjct: 433 YGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGA 492
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
N+ +++ P + L+ L
Sbjct: 493 NLLYELLDQGIQPSAASYAPLIDKLC 518
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+++ + K ++ Q + Y LI L + GK+ EAM VW M + PD Y+ +I
Sbjct: 463 AVEVWKDMAKHNFTQNEV-CYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMI 521
Query: 185 RGFLKDGSPADAMNIYEDMI-KSPDP-PEELPFRILLKGLL 223
G G DAM +Y +M+ + PD P+ + + ILL L
Sbjct: 522 NGLSIAGLVEDAMQLYNEMLCQGPDSQPDVVTYNILLNTLC 562
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 48/86 (55%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+ + +Y +I L R GK ++A++V M + P++ T + +++GF + G+ A+
Sbjct: 405 YELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAV 464
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++DM K E+ + +L+ GL
Sbjct: 465 EVWKDMAKHNFTQNEVCYSVLIHGLC 490
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y+Y LI L + GK EAM +++ M + ++ Y+ VI G +DG P DA+
Sbjct: 370 YCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDGLCRDGKPDDAV 429
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+ +M P L+KG
Sbjct: 430 EVLSEMTNKGCTPNAYTCSSLMKG 453
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 9/112 (8%)
Query: 125 AVKIFD--IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A+++F IRK +PD Y Y L+ L + +++EA+ + + M+ + FP T+
Sbjct: 218 AIQVFRDMTIRK---CEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNV 274
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+I G K G + A + ++M P E+ + L+ GL L+ K++K
Sbjct: 275 LINGLCKKGDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGL----CLKGKLEK 322
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+AY L+ G + A++VW+ M K + + Y+ +I G KDG +AM +
Sbjct: 442 PNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMV 501
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M+ P+ + + ++ GL
Sbjct: 502 WTQMLGKGCKPDVVAYSSMINGL 524
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + +I A+ + G +++A+QV+ M PD TY ++ G K +A++
Sbjct: 196 SPNVLTFNLVIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVS 255
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M P + F +L+ GL
Sbjct: 256 LLDEMQIDGCFPSPVTFNVLINGLC 280
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y LI ++ + G +N AM+ + MR L P+ +TYT +I GF + G
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A I ++M+++ P + + L+ G
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALING 422
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I L R G+M E ++ E M K PD T+ +I G+ G+ A+
Sbjct: 270 NPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M+K+ P + + L+ +
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMC 354
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + ++ E +++ M L PD TYT +I + +G A+
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD------FEELFPEKHAYDP 248
++++MI+ P+ + + +L+ G R+K K +EE P + Y+
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQS--RTKEAKRLLLKLLYEESVPNEITYNT 593
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I R ++ +A Q+ M + + PD TY+ +I+G K + ++
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M+ PP+E+ + L+
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINA 527
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ + P Y LI G+M +A + + M + PD +Y+ +I GF ++
Sbjct: 406 ENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
A + +M+ P+ + L++GL L +V F+E+ PP+E+
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL-GEVCDLFQEMLSLGL---PPDEV 519
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ G MNEA +V ESM ++ + + Y +I G K G+ A N+Y++M+ S
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668
Query: 208 DPPEELPFRILLKGL 222
P + L K L
Sbjct: 669 FAPHSVTIMALAKSL 683
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A G +++A+++ + M ++ PD TY +I GF K +A +
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRL 575
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ P E+ + L+
Sbjct: 576 LLKLLYEESVPNEITYNTLI 595
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y LI ++ + G +N AM+ + MR L P+ +TYT +I GF + G
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A I ++M+++ P + + L+ G
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALING 422
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I L R G+M E ++ E M K PD T+ +I G+ G+ A+
Sbjct: 270 NPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALV 329
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M+K+ P + + L+ +
Sbjct: 330 LHAEMVKNGLSPNVVTYTTLINSMC 354
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + ++ E +++ M L PD TYT +I + +G A+
Sbjct: 480 SPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALR 539
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD------FEELFPEKHAYDP 248
++++MI+ P+ + + +L+ G R+K K +EE P + Y+
Sbjct: 540 LHDEMIQKGFSPDIVTYNVLINGFNKQS--RTKEAKRLLLKLLYEESVPNEITYNT 593
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I R ++ +A Q+ M + + PD TY+ +I+G K + ++
Sbjct: 446 PDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL 505
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M+ PP+E+ + L+
Sbjct: 506 FQEMLSLGLPPDEVTYTSLINA 527
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ + P Y LI G+M +A + + M + PD +Y+ +I GF ++
Sbjct: 406 ENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELE 465
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
A + +M+ P+ + L++GL L +V F+E+ PP+E+
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL-GEVCDLFQEMLSLGL---PPDEV 519
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ G MNEA +V ESM ++ + + Y +I G K G+ A N+Y++M+ S
Sbjct: 609 LMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG 668
Query: 208 DPPEELPFRILLKGL 222
P + L K L
Sbjct: 669 FAPHSVTIMALAKSL 683
Score = 40.0 bits (92), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A G +++A+++ + M ++ PD TY +I GF K +A +
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRL 575
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ P E+ + L+
Sbjct: 576 LLKLLYEESVPNEITYNTLI 595
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA Y LI L R G+++EA +++E M + P++ YT +IR F K G D
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535
Query: 199 IYEDMIK---SPD 208
IY +M++ SPD
Sbjct: 536 IYNEMLRLGCSPD 548
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
MD V E+E+ +K I PDA Y LI L + G +EA +++
Sbjct: 556 MDCVFKAGEIEKGRALFQEIKNLGFI-------PDARSYTILIHGLVKAGFAHEAYELFY 608
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+M+++ D++ Y VI GF K G A + E+M P + + ++ GL
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664
Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + K N+A W+ M+K+ P+ TYT +I G K G+ +A +
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTL 816
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E + + + +++GL
Sbjct: 817 FEKFKEKGGVADSAIYNAIIEGL 839
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VL + +R E AV++F+ + Q+ P AY Y +I+ GK +A + E
Sbjct: 311 MIGVLCKADRLNE---AVELFEHM-DQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQ 366
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
R++ P +Y ++ + G +A+ +E+M K P
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP 407
Score = 40.0 bits (92), Expect = 0.93, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L R+ + A+K F+ ++K P+ Y +I L + GK+ A+ V ++M+
Sbjct: 381 ILSCLGRKGQVDEALKKFEEMKKDAI--PNLSTYNIMIDMLCKAGKLETALVVRDAMKDA 438
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
LFP+ T ++ K DA +I+E + P+ + + L++GL H
Sbjct: 439 GLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRH 492
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIEL---ERQEETILAVKIFDIIRKQDWYQPDAYIYK 146
+E L+KF + + + ++I++ + ET L V+ D ++ + P+
Sbjct: 392 DEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVR--DAMKDAGLF-PNVITVN 448
Query: 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
++ L + ++++A ++E + + PD+ TY +I G + G +A +YE M+ +
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDA 508
Query: 207 PDPPEELPFRILLKGLL 223
P + + L++
Sbjct: 509 NQIPNAVVYTSLIRNFF 525
Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y + L+ AL + +++EA+ ++SM+ P+ TY+ +I G K
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFN 776
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A +++M K P + ++ GL
Sbjct: 777 KAFVFWQEMQKQGFKPNVFTYTTMISGL 804
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + +PD +Y I + GK++ A + + M+ L D TYT +I K
Sbjct: 262 KSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDVTYTSMIGVLCKADRL 321
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A+ ++E M ++ P + ++ G
Sbjct: 322 NEAVELFEHMDQNKQVPCAYAYNTMIMG 349
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 58.2 bits (139), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA Y LI L R G+++EA +++E M + P++ YT +IR F K G D
Sbjct: 476 RPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHK 535
Query: 199 IYEDMIK---SPD 208
IY +M++ SPD
Sbjct: 536 IYNEMLRLGCSPD 548
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 7/116 (6%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
MD V E+E+ +K I PDA Y LI L + G +EA +++
Sbjct: 556 MDCVFKAGEIEKGRALFQEIKNLGFI-------PDARSYTILIHGLVKAGFAHEAYELFY 608
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+M+++ D++ Y VI GF K G A + E+M P + + ++ GL
Sbjct: 609 TMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGL 664
Score = 44.7 bits (104), Expect = 0.042, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + K N+A W+ M+K+ P+ TYT +I G K G+ +A +
Sbjct: 757 PNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTL 816
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E + + + +++GL
Sbjct: 817 FEKFKEKGGVADSAIYNAIIEGL 839
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VL + +R E AV++F+ + Q+ P AY Y +I+ GK +A + E
Sbjct: 311 MIGVLCKADRLNE---AVELFEHM-DQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQ 366
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
R++ P +Y ++ + G +A+ +E+M K P
Sbjct: 367 RRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP 407
Score = 40.0 bits (92), Expect = 0.93, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L R+ + A+K F+ ++K P+ Y +I L + GK+ A+ V ++M+
Sbjct: 381 ILSCLGRKGQVDEALKKFEEMKKDAI--PNLSTYNIMIDMLCKAGKLETALVVRDAMKDA 438
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
LFP+ T ++ K DA +I+E + P+ + + L++GL H
Sbjct: 439 GLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRH 492
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIEL---ERQEETILAVKIFDIIRKQDWYQPDAYIYK 146
+E L+KF + + + ++I++ + ET L V+ D ++ + P+
Sbjct: 392 DEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVR--DAMKDAGLF-PNVITVN 448
Query: 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
++ L + ++++A ++E + + PD+ TY +I G + G +A +YE M+ +
Sbjct: 449 IMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDA 508
Query: 207 PDPPEELPFRILLKGLL 223
P + + L++
Sbjct: 509 NQIPNAVVYTSLIRNFF 525
Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 42/88 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y + L+ AL + +++EA+ ++SM+ P+ TY+ +I G K
Sbjct: 717 QKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFN 776
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A +++M K P + ++ GL
Sbjct: 777 KAFVFWQEMQKQGFKPNVFTYTTMISGL 804
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + +PD +Y I + GK++ A + + M+ L D TYT +I K
Sbjct: 262 KSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDVTYTSMIGVLCKADRL 321
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A+ ++E M ++ P + ++ G
Sbjct: 322 NEAVELFEHMDQNKQVPCAYAYNTMIMG 349
>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
succulentifolia]
Length = 429
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++ ++++ M L P+ T+T +I G K+G AM
Sbjct: 207 QPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAME 266
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 267 IYKQMLSQSLSPDLVTYNTLIYGLC 291
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 263 LAMEIYKQMLSQSL-SPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 321
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A MIK +++ + L+ GL
Sbjct: 322 IDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLC 361
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G +NE ++ ++M+ + PD
Sbjct: 152 KEGEIRLAQSVFDAITK--WGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPD 209
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ D ++++M+ P + F L+ G
Sbjct: 210 VYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDG 254
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 243 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDL 302
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 303 IDEMSMKGLKPDKITYTTLIDG 324
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + M KE++ D YT +I G ++G DA
Sbjct: 312 KPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 371
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 372 MLREMLSVGLKPEIGTYTMIIN 393
>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 418
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ + + + L+ GL
Sbjct: 263 IYKQMLSQSLSADLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ +M+ + PD
Sbjct: 148 KEGEIRLAQSVFDAITK--WSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDG 250
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q D Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L D TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|15230719|ref|NP_187294.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207273|sp|Q9SQU6.1|PP216_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g06430, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2750; Flags: Precursor
gi|6437546|gb|AAF08573.1|AC011623_6 unknown protein [Arabidopsis thaliana]
gi|20466300|gb|AAM20467.1| unknown protein [Arabidopsis thaliana]
gi|30387593|gb|AAP31962.1| At3g06430 [Arabidopsis thaliana]
gi|332640870|gb|AEE74391.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 486
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ L +L +++ + A+++FD++R+Q +YQP Y L++ L ++G+ N A ++++ M
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+E L P + YT ++ + + DA +I + M P P+ + LLK +
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQCQPDVFTYSTLLKACV 206
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y LI L+++G++ EA ++M PD+ TYT ++ G + G
Sbjct: 291 KEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 350
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A+++ E+M P + + LL GL L+
Sbjct: 351 LGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 385
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++Y ++ K +EA+ V++ M++E + PD TY +I G K G +A
Sbjct: 260 FKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEAR 319
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M+ + P+ + L+ G+
Sbjct: 320 MYLKTMVDAGYEPDTATYTSLMNGMC 345
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD Y L+ + R G+ A+ + E M P+ TY ++ G K M
Sbjct: 330 YEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGM 389
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+YE M S E + L++ L+
Sbjct: 390 ELYELMKSSGVKLETNGYATLVRSLV 415
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI + + + EAM + + PD Y +++GF ++A+
Sbjct: 226 KPDLVSFTILIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIG 285
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y+ M + P+++ + L+ GL
Sbjct: 286 VYKKMKEEGVEPDQITYNTLIYGL 309
>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Vitis vinifera]
Length = 531
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
K+ V+ L ++ I A FD ++ D ++PD +Y L+ R G ++EA +V+
Sbjct: 216 KIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVF 273
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
M+ + P+ TY+ VI + G A +++ +MI P + F L++
Sbjct: 274 GEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMR 328
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y Y +I AL R+G++ A V+ M P++ T+ ++R +K G +
Sbjct: 282 QPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQ 341
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y M + PP+ + + L++ L VK
Sbjct: 342 VYNQMKRLGCPPDAITYNFLIESHCRDDNLEEAVK 376
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 4/100 (4%)
Query: 125 AVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV F+ R +D+ +PD + +I +L++ + EA ++S+ K+ PD YT +
Sbjct: 200 AVHAFN--RMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSL-KDRFEPDVVVYTSL 256
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G+ + G+ ++A ++ +M + P + I++ L
Sbjct: 257 VHGWCRAGNISEAERVFGEMKMAGIQPNVYTYSIVIDALC 296
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 48/91 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D P+ +++ L+ A+ G + EAM ++E M+K L PD TY VI F + GS
Sbjct: 379 RDGIVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMD 438
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
DAM+ + MI P ++ L++G H
Sbjct: 439 DAMDKFNHMIDKGVEPNFAVYQCLIQGFCTH 469
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 107 MDIVAVLIELERQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
+ +++ L ++ A +IFD IIR + + D I+ LI GKM+EA +V
Sbjct: 492 LSFASLINHLCKEGRVFEAQRIFDMIIRTGE--KADVNIFTSLIDGYCLIGKMSEAFRVH 549
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
++M + PD TY ++ G K+G D + ++ +++ P + I+L GL H
Sbjct: 550 DAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLF-H 608
Query: 226 PLLRSKVKKDFEELFPEKHAYDPP 249
+ K+ F+E+ A P
Sbjct: 609 AGRTAAAKEMFQEMIESGIAVTIP 632
Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ ++K+ PD Y +I A R G M++AM + M + + P+ Y +I
Sbjct: 405 AMFIFEDMQKRG-LNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLI 463
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
+GF G D++K+ EEL + I KGL P
Sbjct: 464 QGFCTHG----------DLVKA----EELVYEIRNKGLGP 489
Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 129 FDIIR---KQDWYQP-DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
DI+R KQ P + +Y ++ L + GK+ EA ++ M ++ + P+ TY VI
Sbjct: 194 LDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVI 253
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
K + A I M+ + P+ + + L+ G
Sbjct: 254 HALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHG 290
Score = 37.4 bits (85), Expect = 6.1, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D I +I + + + EA ++ S+ L P QTYT ++ +K+GS +A ++
Sbjct: 665 DIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVF 724
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
M+KS P ++++ LL
Sbjct: 725 SVMLKSGLSPTSHFINVIVRTLL 747
>gi|326528911|dbj|BAJ97477.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 913
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +IF+ + K QPD IY LI A + G M+ A+++ E M+KE + P ++ + +I
Sbjct: 506 AFRIFEEMLKSG-LQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPII 564
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELF 240
GF G A++I + M +S P + + L+ GL+ + V K +
Sbjct: 565 EGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGIT 624
Query: 241 PEKHAY 246
P +H Y
Sbjct: 625 PNEHTY 630
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+D P+ + Y I A + G M A V + M L P+ +TYT +I+G+ + P
Sbjct: 724 KEDGVPPNIHTYTSYINACCKAGDMQRAQTVIDEMSDVGLKPNLKTYTTLIKGWARASLP 783
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
A+ +E+M + P+E + L+ LL
Sbjct: 784 DRALKCFEEMKLAGLKPDEAAYHCLVTSLLS 814
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I + ++K+ QP ++ +I A G M A+ + + MR+ P TY +I
Sbjct: 541 AIRILEKMQKER-MQPSNRAFRPIIEGFAVAGDMKRALDILDLMRRSGCAPTVMTYNALI 599
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G ++ A+++ M + P E + I+++G
Sbjct: 600 HGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIMRG 636
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 4/125 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+ +A+ + + M + +++TY+ +I GF+
Sbjct: 444 KECCFTPSIISYGCLINLYVKIGKVAKAIAISKEMESSGIKHNNKTYSMLISGFIHLHDF 503
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAYDPP 249
+A I+E+M+KS P+ + +L++ + + K E + P A+ P
Sbjct: 504 TNAFRIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIRILEKMQKERMQPSNRAFRPI 563
Query: 250 EEIFG 254
E F
Sbjct: 564 IEGFA 568
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ ++Y LI AR G + EA + + M+++ + P+ TYT I K G A +
Sbjct: 696 NTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQTVI 755
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
++M P + L+KG LP L+ + L P++ AY
Sbjct: 756 DEMSDVGLKPNLKTYTTLIKGWARASLPDRALKCFEEMKLAGLKPDEAAY 805
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I D++R+ P Y LI L R ++ A+ V M + P+ TYT ++
Sbjct: 576 ALDILDLMRRSGC-APTVMTYNALIHGLIRKNQVERAVSVLNKMSIAGITPNEHTYTIIM 634
Query: 185 RGFLKDGSPADAMNIY 200
RG+ G A A +
Sbjct: 635 RGYAATGDIAKAFEYF 650
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + D YIY+ L+ A ++G+M A+ V M + + ++ Y +I G+ + G
Sbjct: 654 KEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSSQKIARNTFVYNILIDGWARRGDV 713
Query: 194 ADAMNIYEDMIKSPDPPE 211
+A ++ + M + PP
Sbjct: 714 WEAADLMKQMKEDGVPPN 731
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L++ R G + EA V E M + + PD+ TY +I GF K G A+AM +
Sbjct: 265 PNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRL 324
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
E+M P+ + + L+ G H
Sbjct: 325 REEMENLKLSPDVVTYNTLINGCFEH 350
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++I + E+ A++++D +++++ P Y +I L + GK N+A+ + + +
Sbjct: 482 TLIIGYFKHEKASQALRLWDEMKEKEII-PSIITYNSMIAGLCQMGKTNQAIDKLDELLE 540
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD TY +I G+ ++G A + M++ P+ + LL GL +L
Sbjct: 541 SGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEK 600
Query: 231 KVK 233
+K
Sbjct: 601 ALK 603
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + +++ Q+ PDA+ Y +I + G++ EAM++ E M L PD TY +I
Sbjct: 286 AANVIELM-SQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLI 344
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
G + GS + + E+M P + + +++K
Sbjct: 345 NGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVK 380
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/146 (21%), Positives = 66/146 (45%), Gaps = 16/146 (10%)
Query: 93 LQKFIKTHVLRLLK---MDIVAVLIELERQEETIL------------AVKIFDIIRKQDW 137
L +F +H +RL K D + + +++ IL A+++ +R
Sbjct: 169 LVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGC 228
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y ++ L + G++NEA + M+ + LFP+ T+ ++ G + G +A
Sbjct: 229 -PPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAA 287
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
N+ E M ++ P+ + +++ G
Sbjct: 288 NVIELMSQNSVVPDAWTYNVMISGFC 313
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LKMD V +L L R+ + A + R++ ++ D Y LII + K ++A
Sbjct: 438 LKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYF-VDEVSYGTLIIGYFKHEKASQA 496
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+++W+ M+++++ P TY +I G + G A++ +++++S P+E+ + ++ G
Sbjct: 497 LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHG 556
Query: 222 LLPHPLLRSKVKKDFE 237
+V+K F+
Sbjct: 557 YCQ----EGQVEKAFQ 568
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAV---LIELERQEETILAVKIFD--IIRKQDWYQPDAYIY 145
EK +F V + K D+V L L ++ A+K+F+ I + +D DA Y
Sbjct: 564 EKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKD---VDAVSY 620
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+I++L + + EA + E M ++ L PD TY ++ G G DA
Sbjct: 621 NTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDA 671
>gi|226493958|ref|NP_001147934.1| fertility restorer [Zea mays]
gi|195614680|gb|ACG29170.1| fertility restorer [Zea mays]
Length = 563
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L R GK++EA V + M +E P TYT +++G+ + G +A N+
Sbjct: 164 PDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYCRQGQIEEATNL 223
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M ++ PP + + +L++ L
Sbjct: 224 IGFMEEAGCPPNAVTYNVLIRALC 247
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ +L +GK+ +AM+V + M + D +PD TYT +I +D AM
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK 260
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++M P+ + + +L+ G+ L +K
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A+K+ D +R +D +PD Y L+ L+R GK++EA++ + +
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDL-KPDTITYSSLVGGLSREGKVDEAIKFFHEFER 512
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P++ T+ ++ G K A++ MI P E + IL++GL
Sbjct: 513 MGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D + ++D Y PD Y LI A R + AM++ + MR PD TY ++
Sbjct: 223 AMEVLDRMLQRDCY-PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLV 281
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G K+G +A+ DM S P + I+L+ +
Sbjct: 282 NGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I + + + P Y +I LA+ GK +A+++ + MR +DL PD+ TY+ ++
Sbjct: 433 AVEILNQLSSKGC-SPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLV 491
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G ++G +A+ + + + P + F ++ GL
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ DI+ K Q QP++ Y L+ + KM+ A++ E M +PD TY ++
Sbjct: 362 RAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTML 421
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG DA+ I + P + + ++ GL
Sbjct: 422 TALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R +T A KI +I+ PD Y +I + G++N A+ V + M + PD
Sbjct: 149 RLGKTRKAAKILEILEGSGAV-PDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDV 204
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY ++R G AM + + M++ P+ + + IL++
Sbjct: 205 VTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIE 247
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + GK+ +A+++ + + P TY VI G K G A+ +
Sbjct: 412 PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKL 471
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M P+ + + L+ GL
Sbjct: 472 LDEMRAKDLKPDTITYSSLVGGL 494
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R GK +A ++ E + PD TY +I G+ K G +A+++
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSV 194
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ M SPD + + +L+ L L+
Sbjct: 195 LDRMSVSPDV---VTYNTILRSLCDSGKLK 221
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++RK + P + LI L R G + A+ + E M + P+S +Y ++ GF K
Sbjct: 334 DMLRK--GFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCK 391
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ A+ E M+ P+ + + +L L
Sbjct: 392 EKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALC 425
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 47/87 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y +I + R+ K+ +A +V + E L PD TYT ++ G ++GS +A+
Sbjct: 282 KPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALR 341
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ M + P + +LL+G L H
Sbjct: 342 LFRKMEEDGCMPGSCSYNVLLQGCLQH 368
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
KIF ++ + +PD Y Y I + K++EAM++++ M + P++ TY +I+
Sbjct: 166 KIFHLMVSKGL-KPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKA 224
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P DA ++ M P+ L + LL G
Sbjct: 225 LCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFC 261
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
+K++K V + LK D+ + I + + E+ A+++FD + + P+A Y
Sbjct: 162 DKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVV-PNAVTYNT 220
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI AL + + +A ++ M L PD Y+ ++ GF K G+ + + ++++M +
Sbjct: 221 LIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRL 280
Query: 208 DPPEELPFRILLKGLLPHPLLRSKVKKDFEELF---------PEKHAY 246
P+ + + I++ G + RS+ KD +E+ P+ H Y
Sbjct: 281 VKPDLVVYTIIING-----MCRSRKVKDAKEVLSRLIVEGLKPDVHTY 323
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ L R G + EA++++ M ++ P S +Y +++G L+ + +
Sbjct: 317 KPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQ 376
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
+ +M + + R LK LP
Sbjct: 377 LIHEMADRGFYADAVT-RTFLKDFLP 401
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD I+ LI + R GK A + + M PD T ++RG+ G
Sbjct: 106 FKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVR 165
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
I+ M+ P+ + I + G
Sbjct: 166 KIFHLMVSKGLKPDVYSYSIFING 189
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD L+ GK+++ +++ M + L PD +Y+ I G+ K +AM +
Sbjct: 143 PDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMEL 202
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M P + + L+K L
Sbjct: 203 FDEMSHRGVVPNAVTYNTLIKALC 226
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ + G ++E + +++ M++ + PD YT +I G + DA
Sbjct: 247 SPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKE 306
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ +I P+ + L+ GL
Sbjct: 307 VLSRLIVEGLKPDVHTYTALVDGLC 331
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y + LI AL + GK++EA+ ++E M+ +++FP+ TYT +I G K+ A+
Sbjct: 300 NPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 359
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + M + P+ + ILL L L + K+ F+ L
Sbjct: 360 LCKKMKEQGIQPDVYSYTILLDALCKGGRLEN-AKQFFQHL 399
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QPD Y Y L+ AL + G++ A Q ++ + + + +TY +I G K G
Sbjct: 365 KEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLF 424
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D M++ M P+ + F+ ++ L
Sbjct: 425 GDVMDLKSKMEGKGCMPDAITFKTIICALF 454
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + Y LI G + EA + M+ +++ PD T+ +I K+G +A++
Sbjct: 265 SPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAIS 324
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL-PHPLLRS 230
++E+M P + + L+ GL H L R+
Sbjct: 325 LFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERA 357
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+Q D Y LI L + G+ ++ + + PD YT +I K+ DA
Sbjct: 194 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDAC 253
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++Y +MI P + L+ G
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFC 279
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 131 IIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
++RK + + +PD +Y +I L + ++ +A ++ M + + P+ TY +I GF
Sbjct: 220 LLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFC 279
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ +A ++ +M P+ F IL+ L
Sbjct: 280 IMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 313
>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]
Length = 729
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
+ +E+ E LA+++F+ ++ + + IY L+ A+ RTG++ +A+ +++ ++ +
Sbjct: 475 VMIEKGERLKLALEVFEHLKAKGYCSIS--IYNILMEAIHRTGEVKKALSLFDDIKDSNF 532
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PDS TY+ I F++ G +A Y +I+ P +R L+KGL
Sbjct: 533 KPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLC 582
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
M +V L + R +E + ++ D +R + +PD + Y ++ L G ++ ++VWE
Sbjct: 261 MILVKGLCKAGRIDEVL---ELLDRMRG-NLCKPDVFAYTAMVKVLVAEGNLDGCLRVWE 316
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
MRK+ + PD YT ++ + ++++M
Sbjct: 317 EMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEM 353
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ +++ K+D ++ Y L+ L + G+++E +++ + MR PD YT +
Sbjct: 240 LAMSVYEDF-KEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVFAYTAM 298
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE- 242
++ + +G+ + ++E+M K P+ + + L+ L ++V + F ELF E
Sbjct: 299 VKVLVAEGNLDGCLRVWEEMRKDKVEPDVMAYTTLVAALCNG----NRVGEGF-ELFKEM 353
Query: 243 -KHAYDPPEEIFGKL 256
+ Y I+G L
Sbjct: 354 KQKKYLIDRAIYGSL 368
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P ++Y ++ L +TG ++ AM V+E +++ L +S TY +++G K G + +
Sbjct: 219 KPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLE 278
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M + P+ + ++K L+
Sbjct: 279 LLDRMRGNLCKPDVFAYTAMVKVLV 303
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
V+E M+K + P Y ++ G +K G AM++YED + E + + IL+KGL
Sbjct: 209 VYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLC 268
>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 654
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ YIY I+ L R KM EA +++E M+K + P+ TY+ +I G+ K G+ A
Sbjct: 231 KPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYG 290
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y++++ + P + F L+ G
Sbjct: 291 LYKEILVAELLPNVVVFGTLVDGFC 315
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI L ++ EA ++++ M+ E +FP S TY +I G+ K+ + A++
Sbjct: 371 SPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALD 430
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ +M S P + F L+ G
Sbjct: 431 LCSEMTASGVEPNIITFSTLIDG 453
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + M EA++++ M + + P+ T+ ++ GF K+G + A++
Sbjct: 477 PDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDF 536
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
Y++ + + F L++GL +
Sbjct: 537 YQENNQQRSCWNHVGFTCLIEGLCQN 562
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y+Y LI ++G M EA+ + M +L PD TYT +I G + A+A +
Sbjct: 337 PNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRL 396
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P + L+ G
Sbjct: 397 FQKMKNERIFPSSATYNSLIHG 418
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
+++L R + A K+F++++K P+ Y Y +I +TG + +A +++ + +
Sbjct: 241 ILDLCRDNKMEEAEKMFELMKKHGVL-PNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAE 299
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P+ + ++ GF K A +++ M+K P + L+ G
Sbjct: 300 LLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHG 348
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI + AM ++ M + + PD TYT +I K+ + +A+
Sbjct: 441 EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALR 500
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+Y DM+++ P + F L+ G
Sbjct: 501 LYSDMLEAGIHPNDHTFACLVDG 523
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F +++ + +PD +Y LI A+ + G + +A +++ + + L P+ Q YT +I
Sbjct: 464 AFRLFRVMQST-YLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTII 522
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
K+G +A+ + +M PP+E + ++++G L +
Sbjct: 523 NNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNVIIRGFLQY 563
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E + A K+FD + + +PDA+ Y LI + +++EA Q++ M + L PD+ Y
Sbjct: 355 EIVEARKLFDAMITKGC-KPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNY 413
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+I G + G +A +++++M + + P+ + +LL G L
Sbjct: 414 NTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYL 461
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPDA + LI L + GK +A++ ++ P TYT +I G K G A
Sbjct: 162 QPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAG 221
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+++ M ++ P + + IL+ L L+
Sbjct: 222 LFKKMEEAGCQPNVVTYNILIDSLCKDKLVN 252
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 1/103 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA ++++M PD TY+ ++ GF K+G A +
Sbjct: 408 PDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRL 467
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M + P+ + IL+ + L+ +K F ELF +
Sbjct: 468 FRVMQSTYLKPDIAMYNILIDAMCKFGNLKD-ARKLFSELFVQ 509
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 46/82 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + L+ A+ + GK++EA V+++M + + PD TY+ ++ G+ +A +
Sbjct: 303 PNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKL 362
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ MI P+ + IL+KG
Sbjct: 363 FDAMITKGCKPDAFSYNILIKG 384
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ + ++ EA +++++M + PD+ +Y +I+G+ K +A
Sbjct: 337 EPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQ 396
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++ +MI P+ + + L+ GL LR ++LF H+ ++F
Sbjct: 397 LFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREA-----QDLFKNMHSNGNLPDLF 446
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+ FD QP Y Y +I L + G+ A +++ M + P+ TY +I
Sbjct: 184 AVEFFDDFEASGC-QPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILI 242
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A++I+ M P+ + L++GL
Sbjct: 243 DSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLC 281
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + +++ A V+ M K L PD+ T+ +I G K G A A+
Sbjct: 127 SPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVE 186
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++D S P + ++ GL
Sbjct: 187 FFDDFEASGCQPTVYTYTTIINGLC 211
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++ L + ET A +F + + QP+ Y LI +L + +NEA+ ++ M+
Sbjct: 204 TTIINGLCKIGETTAAAGLFKKMEEAGC-QPNVVTYNILIDSLCKDKLVNEALDIFSYMK 262
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + PD TY +I+G +A + +M P F +L+ +
Sbjct: 263 AKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAIC 316
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+FD++ + +PD Y LI GKM+EA ++ SM + PD TY +I G
Sbjct: 335 KLFDLMVRI-GVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 393
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ + DA+ ++++M+ S P + + I+L+GL
Sbjct: 394 YCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGL 429
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 48/90 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +P+ Y L+ L + G+ EA ++++SM K L PD TY +++G K+G
Sbjct: 271 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRV 330
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ +++ M++ P+ + + L+ G
Sbjct: 331 IESEKLFDLMVRIGVKPDIITYNTLIDGCC 360
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ + + K + PD Y ++ +G+ EA+ + MR + + P+ TY+ ++
Sbjct: 228 AMEVLNTMVK-NGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLM 286
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
K+G +A I++ M K P+ +R LL+G
Sbjct: 287 NYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 323
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 140 PDAYIYKDLIIALARTG--------KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
PD Y ++ + G M++AM+V +M K + PD TY ++ G+ G
Sbjct: 199 PDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 258
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
P +A+ + M P + + L+ L +
Sbjct: 259 QPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKN 292
>gi|297833394|ref|XP_002884579.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
gi|297330419|gb|EFH60838.1| EMB2750 [Arabidopsis lyrata subsp. lyrata]
Length = 486
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ L +L +++ + A+++FD++R+Q +YQP Y L++ L ++G+ N A ++++ M
Sbjct: 91 VTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKLLVLLGKSGQPNRAQKLFDEM 150
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+E L P + YT ++ + + DA +I + M P P+ + LLK +
Sbjct: 151 LEEGLEPTVELYTALLAAYTRSNLIDDAFSILDTMKGLPQCQPDVFTYSTLLKACV 206
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + PD TY VI
Sbjct: 381 LFDLMLG-DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAK 484
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y +LI + TG+ EA++V++ MR+ + PD T + ++ K G +A ++
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P + I+L G
Sbjct: 347 FDTMAMKGQNPNVFSYTIMLNG 368
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +PD Y+ +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 413 AMIIFNEMRDHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLI 471
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
+GF GS A + +++ +
Sbjct: 472 QGFCTHGSLLKAKELISEIMNN 493
Score = 44.7 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+ PD L+ +L + GK+ EA V+++M + P+ +YT ++
Sbjct: 308 AVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIML 366
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G D ++++ M+ P+ F +L+K
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 403
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + PD Y+ VI GF K+G A
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKAC 239
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+++++M++ PP+ + + ++ L
Sbjct: 240 DLFKEMVQRGIPPDFVTYSSVVHAL 264
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KI + ++K + P+ + Y L+ + G++ EA +V++ M+ L PD+ YT +I
Sbjct: 334 ALKIMEFMKK-NGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLI 392
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F + G +AM + +DM ++ + + F ++L GL
Sbjct: 393 NFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLC 431
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
A ++ + ++K P+ Y LI L +G++ EA++++E M K+ + PD+ TY +
Sbjct: 262 AFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNAL 321
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I GF A+ I E M K+ P + L+ G L + K+ F+E+
Sbjct: 322 INGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLE-EAKEVFDEM 376
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + +D PDA Y LI K++ A+++ E M+K P+ Y+ ++
Sbjct: 298 AIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALM 357
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
GF K+G +A ++++M P+ + + L+
Sbjct: 358 NGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLIN 393
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + K +PD Y LI R G+++EAM++ + M + D+ T+ ++
Sbjct: 369 AKEVFDEM-KSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVIL 427
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G ++G +A + E + + +RI+L L
Sbjct: 428 GGLCREGRFEEAXGMLERLPYEGVYLNKASYRIVLNSLC 466
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y LI L R GK++EA M+ + P+S TY+ ++RG+ + G A+ +
Sbjct: 378 PNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILV 437
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M + E+ + IL+ GL
Sbjct: 438 WKEMANNNCIHNEVCYSILINGLC 461
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++ + Y+Y LI L + GK N+AM++W+ M + P++ Y+ +I G ++G +A
Sbjct: 341 HRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEAR 400
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+M P + L++G
Sbjct: 401 GFLSEMKNKGYLPNSFTYSSLMRG 424
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 9/120 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ L + +++EA+ + + M+ E FP+ + +I K G A +
Sbjct: 203 PDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKL 262
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD---FEELFPEKHAYDPPEEIFGKL 256
++M P E+ + L+ GL L+ K++K ++ K P + FG L
Sbjct: 263 VDNMFLKGCVPNEVTYNALVHGL----CLKGKLEKAVSLLNQMVSNKCV--PNDVTFGTL 316
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 46/100 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K Y P+++ Y L+ G ++A+ VW+ M + + Y+ +I G KDG
Sbjct: 407 KNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKF 466
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+A+ +++ M+ + + + ++ G L+ +K
Sbjct: 467 MEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLK 506
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+A + +I A+ R G +++A++V+ + + PD+ TY+ ++ G K+ +A++
Sbjct: 167 HPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVS 226
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M P + F +L+ L
Sbjct: 227 LLDEMQVEGTFPNLVAFNVLISALC 251
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y LI L + GK EA+ VW+ M + D Y+ +I GF + ++ M
Sbjct: 452 CYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQM 511
Query: 204 I-KSP-DPPEELPFRILLKGLL 223
+ + P P+ + + ILL
Sbjct: 512 LCQGPVVQPDVITYNILLNAFC 533
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +P+ Y LI L GKM EA+ V + M + +FP+ TY+ +I GF K G
Sbjct: 341 QEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLV 400
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
A I+ MI + P + + ++ L + +
Sbjct: 401 GASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFN 435
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L+ G + A+ V M P+ T+T +++G+ G +A+++
Sbjct: 276 PDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDL 335
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAYDPPEEIFGK 255
+ MI+ P + + L+ GL + + V K + +FP + Y + F K
Sbjct: 336 WNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAK 395
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y LI AL + GK+ EA + M KE + P+ TY+ ++ G+ G +A
Sbjct: 339 NPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQ 398
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+ M+++ P + I++ GL
Sbjct: 399 IFHAMVQTEVNPSVCSYNIMINGLC 423
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L L + ET A+K+ +I + +PD +Y +I L + +NEA + M
Sbjct: 242 TLLNGLCKIGETRCAIKLLRMIEDRST-RPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNS 300
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+FPD TY+ +I GF G A ++ +M P+ + IL+ L
Sbjct: 301 RGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALC 353
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P Y +I L + ++EAM + M +++ P++ TY +I G K G
Sbjct: 405 QTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRIT 464
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+++ +++ P + + + LL GL
Sbjct: 465 SALDLMKELHHRGQPADVITYTSLLDGLC 493
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI G++ A + M +++ PD TYT +I K+G +A N+
Sbjct: 305 PDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNL 364
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M K P + + L+ G
Sbjct: 365 LGVMTKEGVKPNVVTYSTLMDG 386
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QP+ Y Y LI L + ++ A ++++ + + D TY +I G K+G
Sbjct: 509 KERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGML 568
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A+ + M + P+ + F I+++ L
Sbjct: 569 DEALAMKSKMEDNGCIPDAVTFEIIIRSL 597
>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
asparagoides]
Length = 418
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y + LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 QPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M+ P+ + + L+ GL
Sbjct: 263 IYRQMLSQSLLPDLITYNTLIYGLC 287
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM+++ M + L PD TY +I G K G ++
Sbjct: 239 PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + + + + M + L PD TYT +
Sbjct: 259 LAMEIYRQMLSQSLL-PDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK ++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLC 357
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|125531614|gb|EAY78179.1| hypothetical protein OsI_33227 [Oryza sativa Indica Group]
Length = 342
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ PD Y +I L + G+M +A QV MR + + P++ TY +I G++ G
Sbjct: 108 EQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRAKGVMPNTVTYNTLIHGYVALGDN 167
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
A A ++E+M+K+ + + + L+ GL ++ KV+ EL ++ +P F
Sbjct: 168 AMAGRVHEEMVKNRVELDIVTYNALILGLFNEGKMK-KVEHLLREL--DRAKLEPNASTF 224
Query: 254 GKL 256
L
Sbjct: 225 SAL 227
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A + LI+ + A+Q+ M+K P+ TY VI F K+ A++
Sbjct: 218 EPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVD 277
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ DM+ P++ GL
Sbjct: 278 VMGDMLGRCIAPDKALLNEFFDGL 301
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 145 YKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ LI A R G A+Q+ M +E L PD TY +I G K+G A + +M
Sbjct: 83 FHTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEM 142
Query: 204 IKSPDPPEELPFRILLKG 221
P + + L+ G
Sbjct: 143 RAKGVMPNTVTYNTLIHG 160
>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
Length = 506
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + ++D PD Y LI R G++ +A ++ MRK + P++ Y +I
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K G A ++E+MI+S P+ + + L+ L H
Sbjct: 309 NGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRH 349
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF +RK + +P+A+ Y LI + G++ A V+E M + + PD+ +YT ++
Sbjct: 285 AQSIFGFMRKNEC-EPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLV 343
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G+ + +N+ ++M + + + + +LL+GL
Sbjct: 344 GCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLC 382
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRK---EDLFPDSQTYTEVIRGFLKDGSPAD 195
QP+ IY LI + G + A QV++ MRK D+ P TY+ +I G + +
Sbjct: 189 QPNTCIYNILIKHYVKKGDLGTAFQVFDEMRKMNCADVRPSLVTYSTLIGGLCRGAQMKE 248
Query: 196 AMNIYEDMI-KSPDPPEELPFRILLKGLL 223
A ++EDMI K P++L + +L+ G
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFC 277
>gi|242074832|ref|XP_002447352.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
gi|241938535|gb|EES11680.1| hypothetical protein SORBIDRAFT_06g033480 [Sorghum bicolor]
Length = 888
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD IY L+ A + G M+ A++++E M+KE + P ++T+ +I GF G A++
Sbjct: 495 QPDRAIYNLLVEAFCKMGNMDRAIRIFERMKKERMQPSNRTFRPIIEGFAVAGDMKRALD 554
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL-PHPLLRSKV---KKDFEELFPEKHAY 246
+ M +S P + + L+ GL+ H + R+ K + P +H Y
Sbjct: 555 TLDLMRRSGCAPTVMTYNALIHGLIRKHQVERAVSVLDKMSIAGIAPNEHTY 606
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+D P+ + + I A + G M A V + M L P+ +T+T +I+G+ K P
Sbjct: 700 KEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWAKVSLP 759
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ +E+M + P+E + L+ LL
Sbjct: 760 DRALKCFEEMKSAGLKPDEAAYHCLVTSLL 789
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 49/90 (54%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ ++P Y LI + GK+ +A+ V + M + +++TY+ +I GF+
Sbjct: 420 KECGFRPSIISYGCLINLYVKIGKVPKALAVSKEMESHGIKHNNKTYSMLINGFIHLHDF 479
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+A +I+EDMIKS P+ + +L++
Sbjct: 480 ANAFSIFEDMIKSGLQPDRAIYNLLVEAFC 509
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF+ ++K+ QP ++ +I A G M A+ + MR+ P TY +I
Sbjct: 517 AIRIFERMKKER-MQPSNRTFRPIIEGFAVAGDMKRALDTLDLMRRSGCAPTVMTYNALI 575
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G ++ A+++ + M + P E + I+++G
Sbjct: 576 HGLIRKHQVERAVSVLDKMSIAGIAPNEHTYTIIMRG 612
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ +IY LI AR G + EA + + M+++ + P+ T+T I K G A N+
Sbjct: 672 NTFIYNILIDGWARRGDVWEAADLMKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVI 731
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
++M P F L+KG LP L+ + L P++ AY
Sbjct: 732 QEMADVGLKPNVKTFTTLIKGWAKVSLPDRALKCFEEMKSAGLKPDEAAY 781
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI A ++E M K L PD Y ++ F K G+ A+ I+E M
Sbjct: 466 YSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMK 525
Query: 205 KSPDPPEELPFRILLKGL 222
K P FR +++G
Sbjct: 526 KERMQPSNRTFRPIIEGF 543
>gi|449442339|ref|XP_004138939.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Cucumis sativus]
Length = 559
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 125 AVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A ++F+ +R + P A Y +I+AL G+M E + E M K PD TY E
Sbjct: 313 ACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKE 372
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+I G G +A E+M K PP+ + + LK L + +
Sbjct: 373 MIEGICVAGKVQEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKM 417
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 11/116 (9%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
+M I + QEE + A + PD Y + AL + G EA +
Sbjct: 470 EMKIADTSVAFSMQEEMLAA-----------GFPPDVITYNVFVHALCQQGNFEEACDLL 518
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
E+M + L PD TYT +I GF+K+G A ++ +M+ P + + +L+
Sbjct: 519 ENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHA 574
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + L+ RTG ++EA +++ ++ DL P TY +I G G A+
Sbjct: 351 FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAAL 410
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAYDP 248
+ ++M P+ + IL+ G + S + F E+ P++ AY+
Sbjct: 411 RLKKEMTDQGLFPDIFTYTILVNGCFKLGYV-SMARGFFNEMLSKGLKPDRFAYNT 465
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD ++ +D P Y LI L G ++ A+++ + M + LFPD TYT ++
Sbjct: 374 AFLLFDELKCRDLV-PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K G + A + +M+ P+ + + G
Sbjct: 433 NGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVG 469
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ ++++ Y P+ Y L+ L++ G++ +A + E M L + TY +I
Sbjct: 234 ALELLSEMQERGCY-PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLI 292
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ E+M+ P + L+ GL
Sbjct: 293 NGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLC 331
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y ++ + + G++++A+++ M++ +P+ TY ++ G K G A
Sbjct: 212 KPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKG 271
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ E+M+ S + L+ G L
Sbjct: 272 LIEEMLNSGLNVSAYTYNPLINGFCQKGLF 301
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 33/81 (40%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
AY Y LI + G EA + E M FP TY ++ G K +
Sbjct: 284 SAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRF 343
Query: 201 EDMIKSPDPPEELPFRILLKG 221
DM+KS P+ + F LL G
Sbjct: 344 SDMLKSKFTPDIVSFNSLLYG 364
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I L T +M+EA + ++ M ++ + P+ +YT +I G +A+ +Y +M+
Sbjct: 603 YNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML 662
Query: 205 KSPDPPEELPFRILLKGL 222
P+ + LK L
Sbjct: 663 DRKIQPDSFTHSVFLKNL 680
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ + G ++ A + M + L PD Y I G +K + A ++
Sbjct: 423 PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSM 482
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E+M+ + PP+ + + + + L
Sbjct: 483 QEEMLAAGFPPDVITYNVFVHALC 506
>gi|357138098|ref|XP_003570635.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Brachypodium distachyon]
Length = 519
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 19/187 (10%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDA 142
L++ +E+L + HV + + EL R + + ++IF ++KQ WY D
Sbjct: 53 LRKTAGGKERLVAVLDRHVKVVRTEHCFLLFEELGRHDGWVQCLEIFRWMQKQRWYVADN 112
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL--KDGSPADAMNI- 199
IY LI + + G++ AM ++ MR PD+ Y +I L +D S A A +
Sbjct: 113 GIYSKLISVMGKKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALAKALG 172
Query: 200 YEDMIKSPD--PPEELPFRILLKGLLPHPLLRSKVKKDFEELF---------PEKHAYDP 248
Y D +K+ + P + + ILL+ R+ K E LF P+ + Y+
Sbjct: 173 YFDKMKTIERCQPNIVTYNILLRA-----CARASDAKQVEILFKDLDESLVTPDIYTYNG 227
Query: 249 PEEIFGK 255
+ +GK
Sbjct: 228 VIDGYGK 234
Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ FD ++ + QP+ Y L+ A AR + +++ + + + PD TY VI
Sbjct: 170 ALGYFDKMKTIERCQPNIVTYNILLRACARASDAKQVEILFKDLDESLVTPDIYTYNGVI 229
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ K+G + ++ M P+ + F IL+
Sbjct: 230 DGYGKNGMIKEMESVLVRMKSKQCRPDVITFNILI 264
>gi|125537837|gb|EAY84232.1| hypothetical protein OsI_05614 [Oryza sativa Indica Group]
Length = 367
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 128 IFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ ++R K D +PD Y L+ LAR G + +A ++M FPD TYT ++
Sbjct: 193 VLGVLRRMKDDGVEPDLVTYNTLVFGLARAGMVTKARTYLDAMAAAGHFPDVITYTSLMN 252
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G A+ + E+M P E + LL GL
Sbjct: 253 GMCVKGDAMGALALLEEMEAKGCEPNERTYNTLLMGLC 290
>gi|449505615|ref|XP_004162522.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g73400, mitochondrial-like [Cucumis sativus]
Length = 559
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 125 AVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A ++F+ +R + P A Y +I+AL G+M E + E M K PD TY E
Sbjct: 313 ACELFEFMRTKGSALSSPTAKTYAIMIVALVNNGRMEECFKFLEYMIKSGCLPDVSTYKE 372
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+I G G +A E+M K PP+ + + LK L + +
Sbjct: 373 MIEGICVAGKVQEAYMFLEEMGKKGYPPDIVTYNCFLKVLCDNKM 417
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+I+ ++ P+ Y LI ++G+++EA + M + L PD TY+ ++
Sbjct: 204 AQKLFNIMDRKGC-APNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLM 262
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
RGF + G P +A + ++M P + + I+L GL H
Sbjct: 263 RGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKH 303
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + K ++PD Y +I L + G A+Q+ + M ++ P+ Y +I
Sbjct: 29 AVKLFDEMVKM-GHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTII 87
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +AM+ + +M+K PP+ + +L G
Sbjct: 88 DSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y +I L + G NEA +++ M P+S TY +I+GFL++G +A+
Sbjct: 357 QPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVR 416
Query: 199 IYEDMIKSPDPPEELPFRIL 218
+ E+M+ + FR+L
Sbjct: 417 LIEEMVGKGFSADSSTFRML 436
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + T +A+++ + ++ +P+ Y +I +L + + EAM + M KE + P
Sbjct: 55 LCKMGNTTMALQLLKKMEEKGC-KPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPP 113
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D TY+ ++ GF G +A ++++ M++ P ++ F IL+ GL
Sbjct: 114 DVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLC 161
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +IY LI + GK+ A +++ ++ + + P TYT +I G LK G +A
Sbjct: 322 EPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACE 381
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + P + ++++G L
Sbjct: 382 LFREMAVNGCLPNSCTYNVIIQGFL 406
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y ++ G++NEA +++ M + ++ P+ T+T +I G K ++A +
Sbjct: 113 PDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLV 172
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E M + P+ + L+ G
Sbjct: 173 FETMTEKGLEPDVYTYNALVDG 194
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ + G+ EA ++ + M L P+ TY+ V+ G K G +A +
Sbjct: 253 PDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFEL 312
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ M +S P + IL++G+ L + ++ F LF
Sbjct: 313 LKAMQESKIEPNIFIYTILIEGMCTFGKLEA-ARELFSNLF 352
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y L+ +M+EA +++ M ++ P+ ++Y +I G K G +A
Sbjct: 182 EPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKG 241
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ +M P+ + L++G
Sbjct: 242 LLAEMSHKSLTPDIFTYSTLMRGFC 266
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + L+ L K+ +A+++++ M K PD TY+ +I G K G+ A+
Sbjct: 7 QPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + M + P + + ++ L L+ ++ F E+ E
Sbjct: 67 LLKKMEEKGCKPNVVAYNTIIDSLCKDRLV-TEAMDFFSEMVKE 109
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI L + ++EA V+E+M ++ L PD TY ++ G+ +A +
Sbjct: 148 PNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKL 207
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M + P + IL+ G
Sbjct: 208 FNIMDRKGCAPNVRSYNILING 229
>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
Length = 506
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + ++D PD Y LI R G++ +A ++ MRK + P++ Y +I
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K G A ++E+MI+S P+ + + L+ L H
Sbjct: 309 NGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRH 349
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF +RK + +P+A+ Y LI + G++ A V+E M + + PD+ +YT ++
Sbjct: 285 AQSIFGFMRKNEC-EPNAFNYATLINGHCKKGEVEAARGVFEEMIRSGVQPDAVSYTSLV 343
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G+ + +N+ ++M + + + + +LL+GL
Sbjct: 344 GCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLC 382
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRK---EDLFPDSQTYTEVIRGFLKDGSPAD 195
QP+ IY LI + G + A QV++ MR D+ P TY+ +I G + +
Sbjct: 189 QPNTCIYNILIKYYVKKGDLGTAFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKE 248
Query: 196 AMNIYEDMI-KSPDPPEELPFRILLKGLL 223
A ++EDMI K P++L + +L+ G
Sbjct: 249 AFELFEDMIEKDRIVPDQLTYNLLIGGFC 277
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+E R+E+ A ++F+ + Q PD + ++ +R G++ A+ +E M+
Sbjct: 335 MLVESCRKEDVWEAERVFNEML-QRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGV 393
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
L PD+ YT +I G+ ++ + A+ + +M++ + + + LL G L R K
Sbjct: 394 GLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG-----LCRGK 448
Query: 232 VKKDFEELFPE 242
+ D +ELF E
Sbjct: 449 MLDDADELFKE 459
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 84/195 (43%), Gaps = 11/195 (5%)
Query: 43 DFVAHEPILGL--RQYHDGRPRGSL--WRGKKLIGKEALFVIL--GLKRFKDDEEKLQKF 96
D ++ I+G+ R GR +G L+ ++ IL G R DD K
Sbjct: 363 DLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCR-NDDVSGALKM 421
Query: 97 IKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153
V R MD+V +L L R + A ++F + ++ + PD Y LI
Sbjct: 422 RNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVF-PDFYTLTTLIHGYC 480
Query: 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
+ G M +A+ ++E+M L PD TY ++ GF K G A ++ DMI P +
Sbjct: 481 KDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYI 540
Query: 214 PFRILLKGLLPHPLL 228
F IL+ G L+
Sbjct: 541 SFSILINGFCSLGLV 555
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ + G+M +A ++W M ++FP +++ +I GF G ++A
Sbjct: 501 KPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFR 560
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M + P + ++KG L
Sbjct: 561 LWDEMKEKGIKPTLVTCNTIIKGYL 585
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 16/141 (11%)
Query: 92 KLQKFIKTHVLRLLKMDIVAV---------LIELERQEETILAVKIFDIIRKQDWYQPDA 142
K +T LR LK D+V + E+E+ +E +D+I ++ + P
Sbjct: 487 KALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELW-----YDMISREIF--PSY 539
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ LI G ++EA ++W+ M+++ + P T +I+G+L+ G+ + A +
Sbjct: 540 ISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNT 599
Query: 203 MIKSPDPPEELPFRILLKGLL 223
MI PP+ + + L+ +
Sbjct: 600 MISEGVPPDCITYNTLINSFV 620
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +R G+M EA V M + + PD TYT +I G++ + +A +
Sbjct: 642 PNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRV 701
Query: 200 YEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 702 HDEMLQRGFVPDD 714
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y L+ A R G ++EA + + M + L P TY +I G K+GS A +
Sbjct: 257 ADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRV 316
Query: 200 YEDMIKSPDPPEELPFRILL 219
++M+ P F +L
Sbjct: 317 LDEMLGVGLCPNAATFNPML 336
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + + + A + +M + L P+ TY ++ GF + G +A +
Sbjct: 607 PDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMV 666
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
MI P++ + L+ G
Sbjct: 667 LHKMIDKGINPDKSTYTSLING 688
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
E A K+ I+ K + PD + Y L+ L R G+ + A ++WESM + +P
Sbjct: 370 HSEVNRATKLISIMVKDNCL-PDRHSYNMLLKLLVRVGRFDRATEIWESMGERGFYPSVS 428
Query: 179 TYTEVIRGFL-KDGSPADAMNIYEDMIKSPDPP-----EELPFRILLKGLLPH 225
TY+ +I G K G +A +E MI PP E L R++ GLL H
Sbjct: 429 TYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLRNRLIGFGLLDH 481
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 8/115 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA Y I A ++ V + M++ DL P+ TY +I+ K+G DA
Sbjct: 284 EPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQ 343
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK------KDFEELFPEKHAYD 247
+ +M++ P+ + +L H + K KD P++H+Y+
Sbjct: 344 LLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKD--NCLPDRHSYN 396
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 111 AVLIELERQEETILAV-KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A+ I + I +V + D +++ D P+ + Y +I L + GK+ +A Q+ M
Sbjct: 291 AIFIRAYCEANNIHSVFSVLDRMKRYDLV-PNVFTYNCIIKKLCKNGKVEDAYQLLHEMM 349
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + PD+ +Y ++ + A + M+K P+ + +LLK L+
Sbjct: 350 ERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLV 403
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KI + ++K + P+ + Y L+ + G++ EA +V++ M+ L PD+ YT +I
Sbjct: 291 ALKIMEFMKK-NGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLI 349
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F + G +AM + +DM ++ + + F ++L GL
Sbjct: 350 NFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLC 388
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
A ++ + ++K P+ Y LI L +G++ EA++++E M K+ + PD+ TY +
Sbjct: 219 AFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNAL 278
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I GF A+ I E M K+ P + L+ G L + K+ F+E+
Sbjct: 279 INGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLE-EAKEVFDEM 333
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 50/96 (52%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + +D PDA Y LI K++ A+++ E M+K P+ Y+ ++
Sbjct: 255 AIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALM 314
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
GF K+G +A ++++M P+ + + L+
Sbjct: 315 NGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLIN 350
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + K +PD Y LI R G+++EAM++ + MR+ D+ T+ ++
Sbjct: 326 AKEVFDEM-KSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVIL 384
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G ++G +A + E + + +RI+L L
Sbjct: 385 GGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLC 423
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + QD + PD Y + L+ L + G + A+++ + M +E PD TY VI
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A+ + + MI P + + L+ L
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLC 376
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I D++ Q+ Y PD Y Y +I L + G++ EA++V + M D P++ TY +I
Sbjct: 314 AIEIMDVML-QEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLI 372
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+ +A + + P+ F L++GL
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K DI++ + +PD Y LI L + G++ A ++ S++ + + Y VI
Sbjct: 558 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVI 617
Query: 185 RGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
+G + +A+N++ +M++ + PP+ + +RI+ +GL
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLC 657
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI AL R ++ A+ + E M L PD +T+T V++G++++G A+
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK-----KDFEELFPEKHAYD 247
I E M++ + +++ G + + + + FP+++ ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 15/133 (11%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+++F+ +R + +PD + Y LI +L GK++EA+ + + M TY +
Sbjct: 418 VAMELFEEMRSKGC-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF--- 240
I GF K +A I+++M + + L+ G L +S+ +D +L
Sbjct: 477 IDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDG-----LCKSRRVEDAAQLMDQM 531
Query: 241 ------PEKHAYD 247
P+K+ Y+
Sbjct: 532 IMEGQKPDKYTYN 544
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++ Y LI L ++ ++ +A Q+ + M E PD TY ++ F + G A +I
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIV 563
Query: 201 EDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M + P+ + + L+ GL + LLRS K L P HAY+P
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI-NLTP--HAYNP 615
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L T AM+++E MR + PD TY +I G +A+N+
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ M S + + L+ G ++ ++ EE+F E +
Sbjct: 458 LKQMELSGCARSVITYNTLIDG-----FCKANKTREAEEIFDEMEVH 499
>gi|115443847|ref|NP_001045703.1| Os02g0119700 [Oryza sativa Japonica Group]
gi|41052618|dbj|BAD08127.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|41053255|dbj|BAD07623.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535234|dbj|BAF07617.1| Os02g0119700 [Oryza sativa Japonica Group]
gi|125580592|gb|EAZ21523.1| hypothetical protein OsJ_05149 [Oryza sativa Japonica Group]
gi|215766292|dbj|BAG98520.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 367
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 128 IFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ ++R K D +PD Y L+ LAR G + +A ++M FPD TYT ++
Sbjct: 193 VLGVLRRMKDDGVEPDLVTYNTLVFGLARAGMVTKARTYLDAMAAAGHFPDVITYTSLMN 252
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G A+ + E+M P E + LL GL
Sbjct: 253 GMCVKGDAMGALALLEEMEAKGCEPNERTYNTLLMGLC 290
>gi|255582522|ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528289|gb|EEF30336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 478
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 103/222 (46%), Gaps = 16/222 (7%)
Query: 48 EPILGLRQYH----DGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLR 103
P LRQ H RPR + + E L V L+ F D+ L + + +V R
Sbjct: 35 HPCKNLRQTHITCVSTRPRKKRFPISEESETEDL-VRYVLRSFSSDKVPLVRTLDKYV-R 92
Query: 104 LLKMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+++ + +L E L R+++ + +++F ++KQ WY D+ +Y LI + + G+ AM
Sbjct: 93 VVRTEHCFLLFEELGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAM 152
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFL--KDGSPA--DAMNIYEDMIK-SPDPPEELPFRI 217
++ MR PDS Y +I L KD + A A+ +E M P + + I
Sbjct: 153 WLFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNI 212
Query: 218 LLKGLLPHPLLR--SKVKKDFEE--LFPEKHAYDPPEEIFGK 255
LL+ + + + KD ++ + P+ + Y+ + +GK
Sbjct: 213 LLRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGK 254
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I A L ++ + I A+ F+ ++ QP+ Y L+ A A+ +N+ +++ +
Sbjct: 174 ITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNILLRAFAQARNVNQVNALFKDL 233
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + PD TY V+ + K+G + ++ M + P+ + F +L+
Sbjct: 234 DQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQCKPDIITFNLLI 284
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD++ + + Y LI + ++++AM ++E M +++L P++ TY+ +I
Sbjct: 285 AVKVFDMMVRNGCV-CNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLI 343
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G G DA+ ++ +M+ P + + ILL
Sbjct: 344 HGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILL 378
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + L+ L GK+ EA+ V++ M E P+ TY ++ G KD +A+
Sbjct: 122 HQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEAL 181
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
N++ +MI P+ + L+ L
Sbjct: 182 NLFSEMIAKGISPDIFTYNSLIHALC 207
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 70/148 (47%), Gaps = 4/148 (2%)
Query: 77 LFVILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIVAVLIELERQEETILAVKIFDIIRKQ 135
+ + L +K L + +K+ ++ ++ ++IV + L ++ + A + D++ Q
Sbjct: 203 IHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIV--VDALCKEGKVTEAHDVVDMM-IQ 259
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+PD Y L+ +M+EA++V++ M + + +Y +I G+ K
Sbjct: 260 GGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDK 319
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
AM ++E+M + P + + L+ GL
Sbjct: 320 AMYLFEEMCRQELIPNTMTYSTLIHGLC 347
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 128 IFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ + +K D + PD Y +I + +++ A+ V + K PD+ T+T ++R
Sbjct: 75 VLSLSKKMDSFGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVR 134
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G +A+++++ M+ P + + L+ GL
Sbjct: 135 GLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLC 172
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 2/101 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + ++ EAM + +++ +L PD Q Y I G + G A ++
Sbjct: 369 PNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDL 428
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL--RSKVKKDFEE 238
+ ++ P+ I+++GL LL SK+ ++ +E
Sbjct: 429 FSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDE 469
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + + +I L + G ++EA +++ M + + TY + +G L++ + A+
Sbjct: 438 QPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQ 497
Query: 199 IYEDMI 204
+ E+M+
Sbjct: 498 LLEEML 503
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y I + R G + A ++ ++ L PD T+ +IRG K G +A +
Sbjct: 404 PDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKL 463
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M ++ + + +GLL
Sbjct: 464 FREMDENGCLRNGCTYNTITQGLL 487
>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
Length = 418
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y LI L + KM++A ++++ M L P+ T+T +I G K+G AM
Sbjct: 203 HPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M+ P+ + + L+ GL
Sbjct: 263 IYRQMLSQSLLPDLITYNTLIYGLC 287
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E LA +FD I K W +P + L+ + G ++E ++ M+ + PD
Sbjct: 148 KEGEIRLAQSVFDSITK--WGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPD 205
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ DA ++++M+ + P + F L+ G
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDG 250
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYRQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLC 357
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM+++ M + L PD TY +I G K G A ++
Sbjct: 239 PNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EAM++ M L P++
Sbjct: 255 KEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNT 313
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G+ K DA+ ++++M S P+ + + I+L+GL
Sbjct: 314 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLF 359
Score = 40.8 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
P+ + Y +L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAAL 241
Score = 40.4 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + +M +A+ +++ M + PD TY +++G + A A
Sbjct: 310 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 369
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+Y + +S E + I+L H L ++K+ D ++F
Sbjct: 370 LYVRITESGTQIELSTYNIIL-----HGLCKNKLTDDALQMF 406
>gi|359487410|ref|XP_002273156.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Vitis vinifera]
Length = 538
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE----------------LERQE 120
LFV G + + LQ+ K + R+L+ + IE LE +
Sbjct: 41 LFVRAGKRSSGSSQNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALD 100
Query: 121 ETI------LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
E I A+KIF ++RKQ WY+P Y L++ L + + +A ++E M E L
Sbjct: 101 EAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLR 160
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLK 220
P YT ++ + G A EDM D P+ + IL+K
Sbjct: 161 PTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIK 207
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 57.8 bits (138), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EAM++ M L P++
Sbjct: 255 KEGRVIESEKLFDLMVRIG-VKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNT 313
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY+ +I G+ K DA+ ++++M S P+ + + I+L+GL
Sbjct: 314 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLF 359
Score = 40.8 bits (94), Expect = 0.54, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
P+ + Y +L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAAL 241
Score = 40.4 bits (93), Expect = 0.71, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + +M +A+ +++ M + PD TY +++G + A A
Sbjct: 310 KPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 369
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+Y + +S E + I+L H L ++K+ D ++F
Sbjct: 370 LYVRITESGTQIELSTYNIIL-----HGLCKNKLTDDALQMF 406
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KI + +R + P+ + Y L+ + G++ EA +V++ M+ L PD+ YT +I
Sbjct: 290 ARKIMEFMR-SNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLI 348
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F G +AM + ++M + + + F +LLKGL
Sbjct: 349 NCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLC 387
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
A+++ ++K P+ Y LI L G++ EA++++E M K+ + PD+ TY+ +
Sbjct: 218 ALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVL 277
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I+GF G A I E M + P + +L+ G L + K+ F+E+
Sbjct: 278 IKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLE-EAKEVFDEM 332
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + +D PDA Y LI GK + A ++ E MR P+ Y+ ++
Sbjct: 254 AIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLM 313
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K+G +A ++++M S P+ + + L+
Sbjct: 314 NGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFC 352
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + K +PD Y LI G+++EAM++ + M + D+ T+ ++
Sbjct: 325 AKEVFDEM-KSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLL 383
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G ++G +A+ + E++ + +RI+L L
Sbjct: 384 KGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLNFLC 422
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y LI RTG+M A++++ MR + P++ +T +I K+G+ M+
Sbjct: 252 KPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMD 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE-KHAYDPPEEI 252
+Y+DM P+ + + L+ G L R++ K E + E K+A P+++
Sbjct: 312 LYQDMRVRGVMPDLVAYNALVNG-----LCRARNLKAAESIVEEMKNAGLKPDKV 361
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+F+ +R P+A ++ LI A + G +N M +++ MR + PD Y ++
Sbjct: 274 AVKMFNEMRDT-GVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALV 332
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + + A +I E+M + P+++ + L+ G
Sbjct: 333 NGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCC 371
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD Y LI + GK++ AM + + M ++++ D TYT +I G K G P
Sbjct: 352 KNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRP 411
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
DA + +M+++ P+ + +++
Sbjct: 412 VDAERVLREMMEAALEPDNTTYTMVI 437
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L R + A + E M+ L PD TYT +I G KDG AM+I
Sbjct: 323 PDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDI 382
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M + +E+ + L+ GL
Sbjct: 383 KQKMAEKEVSLDEVTYTALISGL 405
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E + A K+FD +R+ QP + LI + R ++ +++ M + PD
Sbjct: 198 RLGELVSARKVFDEMRRS--VQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDV 255
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
TY +I+GF + G +A+ ++ +M + P + F L+
Sbjct: 256 YTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLI 297
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 4/172 (2%)
Query: 52 GLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA 111
G+ Y D R RG + L+ AL L R E + + +K L+ K+
Sbjct: 309 GMDLYQDMRVRGVM---PDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTT 365
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ + + +A+ I + +++ D Y LI L++ G+ +A +V M +
Sbjct: 366 LIDGCCKDGKLDMAMDIKQKMAEKE-VSLDEVTYTALISGLSKAGRPVDAERVLREMMEA 424
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
L PD+ TYT VI F + G + ++M P + + +++ GL
Sbjct: 425 ALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLC 476
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 39/87 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A R G + ++ + M+ + P TY ++ G K G +A
Sbjct: 427 EPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADM 486
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ M+ P+++ + ILL G H
Sbjct: 487 LLHAMLNIGVSPDDITYNILLDGQCKH 513
>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 712
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 85 RFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYI 144
RF + + L++ +K+ L K+ ++ E RQ + A+ IF + K QPD +
Sbjct: 454 RFPEAYKLLRRGLKSG-LHADKVTYTILISEFCRQTDNKQALAIFSRMFKVG-LQPDMHT 511
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI R K+ E+ +++E L P +TYT +I G+ +DG + A+ + M
Sbjct: 512 YNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMR 571
Query: 205 KSPDPPEELPFRILLKGLL 223
P+ + + L+ GL
Sbjct: 572 DYGCKPDSITYGALISGLC 590
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + D Y+P+ Y Y +I + K+N A + M+++ L P++ TYT +I
Sbjct: 352 AFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLI 411
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G+ A + + M K P + ++ GL
Sbjct: 412 DGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLC 450
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I R G ++ A++ + MR PDS TY +I G + +A +
Sbjct: 542 PTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQL 601
Query: 200 YEDMIKSPDPPEELP 214
YE MI + P E+
Sbjct: 602 YETMIDNGLSPCEVT 616
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K F +R +PD+ Y LI L K++EA Q++E+M L P T +
Sbjct: 563 AIKFFHKMRDYGC-KPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLA 621
Query: 185 RGFLKDGSPADAMNIYEDMIK 205
+ K G A AM I E + K
Sbjct: 622 YEYCKQGDSATAMIILERLEK 642
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+I +EE + ++ I K+ P+ Y LI + G A ++ + M K
Sbjct: 373 TCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGK 432
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
E P+ TY +I G K G +A + +KS +++ + IL+
Sbjct: 433 EGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILI 481
>gi|473874|gb|AAA17740.1| a membrane-associated salt-inducible protein [Nicotiana tabacum]
Length = 435
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 125 AVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A IF D+IR D +PD +Y ++I A G M+ A+++ E M+KE P S+T+ +
Sbjct: 15 AFAIFEDVIR--DGLKPDVVLYNNIIRAFCGMGNMDRALRIVEQMKKERHRPTSRTFMPI 72
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I F K G+ A+++++ M +S P + L+ GL+
Sbjct: 73 IHAFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALILGLV 112
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ ++Y LI AR + EA + + MR+E + PD TYT + K G AMN
Sbjct: 205 NTFVYNILIDGWARRSDVWEAADLMQQMRQEGVQPDIHTYTSFVNACCKAGDMQKAMNTI 264
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++M + P P I L + H L K K FEE+ +K P + ++ L
Sbjct: 265 QEMKRVGLNPMLKP--IPLSYTVGHASLPEKALKCFEEM--KKSGLKPDKAVYHCL 316
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 53/97 (54%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I + ++K+ ++P + + +I A A+ G + +A+ V++ MR+ P QTY +I
Sbjct: 50 ALRIVEQMKKER-HRPTSRTFMPIIHAFAKAGAIRKALDVFDMMRRSGCIPTVQTYNALI 108
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G ++ A+ + ++M+ + P E + ++ G
Sbjct: 109 LGLVEKRQMDKAVEVVDEMLLAGIRPNERTYTTIMDG 145
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L K+ EA ++ M + L PD TYT +I + DG + A+ +
Sbjct: 485 PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRL 544
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD------FEELFPEKHAYD 247
+++M++ P+ + + +L+ GL + R+KV K +EE P+ Y+
Sbjct: 545 HDEMVQRGFLPDNVTYSVLINGL--NKKARTKVAKRLLLKLFYEESVPDDVTYN 596
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y LI + + G ++ A+++++ MR L P+ +TYT +I GF + G +A
Sbjct: 344 SPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYK 403
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ +MI S P + + L+ G
Sbjct: 404 VLSEMIVSGFSPSVVTYNALVHG 426
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IFD +R + +P+ Y LI + G MNEA +V M P TY ++
Sbjct: 366 AVEIFDQMRVRGL-RPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALV 424
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ G +A+ I M++ PP+ + + ++ G
Sbjct: 425 HGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFC 463
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I L G+M+E ++ E MR + L PD TY ++ GF K+G+ + + +M+
Sbjct: 280 YNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMV 339
Query: 205 KSPDPPEELPFRILLKGLL 223
P + + L+ +
Sbjct: 340 GKGLSPNVVTYTTLINCMC 358
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I R ++ +A Q+ E M ++ + PD+ TY+ +I+G +A ++
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDL 509
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M++ PP+E+ + L+
Sbjct: 510 FREMMRRGLPPDEVTYTSLINA 531
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ P Y L+ G++ EA+ + M + L PD +Y+ VI GF ++
Sbjct: 411 SGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGK 470
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD-PPEEI 252
A + E+M++ P+ + + L++GL L+ K+ + F +LF E PP+E+
Sbjct: 471 AFQMKEEMVEKGVLPDTVTYSSLIQGL----CLQQKLVEAF-DLFREMMRRGLPPDEV 523
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 41/94 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G +++ + + M + L P+ TYT +I K G+ + A+ I
Sbjct: 310 PDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEI 369
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++ M P E + L+ G L+ K
Sbjct: 370 FDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYK 403
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 126 VKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
V+ FD+ R+ + PD Y LI A G++++A+++ + M + PD+ TY+ +
Sbjct: 504 VEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVL 563
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
I G K A + + P+++ + L++
Sbjct: 564 INGLNKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENC 602
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 50/90 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + +PD Y +I L G++++A ++++ M KE P TY +I+ K G+
Sbjct: 264 KDESCKPDIVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNV 323
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ +++DM++ P + + +L++GL
Sbjct: 324 EDAVTVFDDMVRKDYMPNVVTYTVLIRGLC 353
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD + ++D Y P+ Y LI L GK++ AM++ E M+ E P QTY +I
Sbjct: 326 AVTVFDDMVRKD-YMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLI 384
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGL 222
R ++G A+ ++E M K D P + + I++ +
Sbjct: 385 RYSFEEGEIEKALCLFERMSKGEDCLPNQDTYNIIISAM 423
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + K+ P Y LI + + G + +A+ V++ M ++D P+ TYT +I
Sbjct: 291 ARKLFDEMSKEGC-TPSVATYNALIQVICKKGNVEDAVTVFDDMVRKDYMPNVVTYTVLI 349
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
RG G AM + E M P + +L++
Sbjct: 350 RGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIR 385
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 45/87 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y LI ++ + G +N AM+ ++ M L P+ +TYT +I GF + G
Sbjct: 116 RNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLD 175
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+A + +M +S P + + L+ G
Sbjct: 176 EAYRVLNEMTRSGFIPSIVTYNALING 202
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++ EA +++ M L PD TYT +I + K+G A+++
Sbjct: 261 PDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHL 320
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++MI+ P+ + + +L+ GL
Sbjct: 321 HDEMIQKGFLPDAVTYNVLINGL 343
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 4/105 (3%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R EE I ++ D++ K PD Y +I AR +++ A Q+ M + + P
Sbjct: 206 LGRMEEAIGLLQ--DMVGK--GVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLP 261
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
D+ TY+ +I+G + +A +++++M+ PP+E + L+
Sbjct: 262 DAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLIN 306
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/85 (22%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + +I L R G++ E +V M ++ PD TY ++ G+ K+G+ A+
Sbjct: 50 EPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALV 109
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M+++ P + + L+ +
Sbjct: 110 LHAEMVRNGLSPNVVTYTSLINSMC 134
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
Y PD Y L+ + G ++A+ + M + L P+ TYT +I K G+ A
Sbjct: 83 GYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRA 142
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
M ++ M P E + ++ G LL
Sbjct: 143 MEFFDQMHVRGLCPNERTYTTIINGFAQQGLL 174
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 4/117 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ + P Y LI G+M EA+ + + M + + PD +Y+ +I GF ++
Sbjct: 186 RSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELD 245
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
A + +MI P+ + + L++GL L F+E+ K PP+E
Sbjct: 246 RAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDM-FQEMLTIKL---PPDE 298
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ FD + + P+ Y +I A+ G ++EA +V M + P TY +I
Sbjct: 142 AMEFFDQMHVRGLC-PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALI 200
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G G +A+ + +DM+ P+ + + ++ G
Sbjct: 201 NGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISG 237
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI A + G +N+A+ + + M ++ PD+ TY +I G K +A +
Sbjct: 296 PDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRL 355
Query: 200 -----YEDMIKSP-------DPPEELPFR---ILLKGLLPHPLLRSKVKKDFEELFPEKH 244
Y+D I S + + F+ L+KG L+ + + FE + + H
Sbjct: 356 LLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLM-DEADQVFESMINKNH 414
Query: 245 AYDPPEEIF 253
P E I+
Sbjct: 415 --KPNEAIY 421
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ G M+EA QV+ESM ++ P+ Y +I G + G+ A +Y++M+
Sbjct: 389 LVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVHVD 448
Query: 208 DPPEELPFRILLKGLLPHPL 227
P + L+K L +
Sbjct: 449 FVPHTVTVLALVKALFTEGM 468
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)
Query: 125 AVKIFDIIR--------KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
AVK+ D+ + K D P +IY LI L + +MN+A Q+++ M L P
Sbjct: 189 AVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPS 248
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ K G+P + + E M P + F LLKGL
Sbjct: 249 LITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295
Score = 40.0 bits (92), Expect = 0.85, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L+ TGK++EA + + ++ L PD TY +I G+ G+ + +YE+M
Sbjct: 567 YNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMK 626
Query: 205 KSPDPPEELPFRILL 219
+S P + +L+
Sbjct: 627 RSGIKPTLKTYHLLI 641
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y ++ A G M +A + + M ++ + D TY +I G LK G + +
Sbjct: 662 KPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRS 721
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ ++M PE + I++KG
Sbjct: 722 LIDEMNAREMEPEADTYNIIVKG 744
Score = 37.4 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L + ++ + + +F I + D ++P ++Y I A + + + ++++ M+ +
Sbjct: 150 LLDHLVKTKQFRVTINVFLNILESD-FRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHD 208
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++P Y +I G K DA ++++M+ P + + L+ G
Sbjct: 209 RIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDG 258
>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
Length = 484
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 140 PDAYIYKDLIIALARTGK--MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y+Y LI R K ++EA+ ++++M+ ++P+ TY V+RG K G +A
Sbjct: 357 PDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAY 416
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
I+++M K P + F+++ G ++ + FE +F
Sbjct: 417 QIFQEMFKVKCSPNRMTFKVMTMG-----MIHCRKTDKFERIF 454
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 28/243 (11%)
Query: 2 ATRLFSRSKI----PILAS--IVLQNLT--KNPSKNFSFLAFKPKSPIV-DFVAHEPILG 52
A R F R P L S I++Q +NP + + +L + I D A+ +L
Sbjct: 63 AVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVL- 121
Query: 53 LRQYHD-GRPRGSLWR----GKKLIGKEALF--VILGLKRFKDDEEKLQKFIKT-HVL-- 102
+ Y D GR +L + GK A + VI GL +F + + F + H L
Sbjct: 122 -KGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVD 180
Query: 103 --RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
+V L + ER E A+K++D++ + + Y DA Y + + +++E
Sbjct: 181 PDGFTYSTLVHGLCQAERLEA---AIKVYDMMLEAN-YDGDAGAYNAMADGFCKERRVDE 236
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLK-DGSPADAMNIYEDMIKSPDPPEELPFRILL 219
A++V ++M + P TY +I G + +A +++ M+ S PP + + ++
Sbjct: 237 ALEVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMI 296
Query: 220 KGL 222
GL
Sbjct: 297 LGL 299
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA--DA 196
PD Y Y LI A + K++EA + + + + PD YT +I G+ + P +A
Sbjct: 321 SPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEA 380
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
+ ++++M P + + I+L+GL + + F+E+F K +
Sbjct: 381 LLLFQNMKDRRVWPNVITYNIVLRGLCKTGRF-DEAYQIFQEMFKVKCS 428
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ R LA K FD KQ+ Y+ D Y Y L+ L R + EA++ ++ P
Sbjct: 18 IRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRP 77
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++T +I+ F +P A M PP+ + ++LKG
Sbjct: 78 SLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKG 123
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y +I+ L++ ++ +++++ M K L PD Y +I F+K +A +I
Sbjct: 287 PNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSI 346
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+D ++ P+ + L+ G
Sbjct: 347 LQDAARNHVGPDVYMYTTLISG 368
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K P+ Y Y L+ LAR ++EA+ M++ PD +Y ++
Sbjct: 495 AINLFDEMSKLGC-TPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIIL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G P AM + +M S P+ + + +L L
Sbjct: 554 NGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSAL 591
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R + +PD + Y +LI L + G+++EA + M++E PD+ +I
Sbjct: 284 ALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMI 342
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G D + ++E+M S P + + ++K L S+V FE +
Sbjct: 343 NFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERM 397
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L RQ+ A+++ + + K++ QP A IY +I + ++ A+ ++E M
Sbjct: 236 LISAFCKLGRQDS---AIRLLNEM-KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
R PD TYTE+IRG K G +A + Y +M + P+ +
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREGCKPDTV 336
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 51/96 (53%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++++ + + QPD Y LI A + G+ + A+++ M++ + P ++ YT +I
Sbjct: 215 ELYNEMSNEGHCQPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISL 274
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K + A++++E+M P+ + L++GL
Sbjct: 275 FFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGL 310
>gi|15983487|gb|AAL11611.1|AF424618_1 AT5g04810/MUK11_13 [Arabidopsis thaliana]
Length = 950
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+I+ K++ +PD + Y I A ++ G MN A Q E M + P+ +TYT +I+G+
Sbjct: 748 DLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 807
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P A++ YE+M P++ + LL LL
Sbjct: 808 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLL 843
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+++A++V M++E + + +TY+ +I GF+K
Sbjct: 474 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 533
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+A ++EDM+K P+
Sbjct: 534 ANAFAVFEDMVKEGMKPD 551
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + K+ +PD +Y ++I A G M+ A+Q + M+K P ++T+ +I
Sbjct: 536 AFAVFEDMVKEG-MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 594
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G ++ +++ M + P F L+ GL+
Sbjct: 595 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 633
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y LI AR G + EA + + M+KE + PD TYT I K G A
Sbjct: 726 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 785
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M P + L+KG
Sbjct: 786 EEMEALGVKPNIKTYTTLIKG 806
>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
camara]
Length = 431
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+ A +++ M + L P+ T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLC 293
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCC 328
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 363
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ A ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDG 256
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD+ TYT ++ F K G +
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHAPSVVTYNVLMNG 431
>gi|42567647|ref|NP_568141.2| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|122223689|sp|Q0WMY5.1|PP365_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g04810, chloroplastic; AltName: Full=Maize PPR4
homolog; Short=AtPPR4; Flags: Precursor
gi|110739199|dbj|BAF01515.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
gi|332003406|gb|AED90789.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 952
Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+I+ K++ +PD + Y I A ++ G MN A Q E M + P+ +TYT +I+G+
Sbjct: 750 DLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 809
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P A++ YE+M P++ + LL LL
Sbjct: 810 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLL 845
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+++A++V M++E + + +TY+ +I GF+K
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 535
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+A ++EDM+K P+
Sbjct: 536 ANAFAVFEDMVKEGMKPD 553
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + K+ +PD +Y ++I A G M+ A+Q + M+K P ++T+ +I
Sbjct: 538 AFAVFEDMVKEG-MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G ++ +++ M + P F L+ GL+
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y LI AR G + EA + + M+KE + PD TYT I K G A
Sbjct: 728 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 787
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M P + L+KG
Sbjct: 788 EEMEALGVKPNIKTYTTLIKG 808
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K P+ Y Y L+ LAR ++EA+ M++ PD +Y ++
Sbjct: 495 AINLFDEMSKLGC-TPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIIL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G P AM + +M S P+ + + +L L
Sbjct: 554 NGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSAL 591
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R + +PD + Y +LI L + G+++EA + M++ED PD+ +I
Sbjct: 284 ALSLFEEMRYM-YCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMI 342
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G D + ++E+M S P + + ++K L S+V FE +
Sbjct: 343 NFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERM 397
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L RQ+ A+++ + + K++ QP A IY +I + ++ A+ ++E M
Sbjct: 236 LISAFCKLGRQDS---AIRLLNEM-KENGMQPTAKIYTMIISLFFKLDNVHGALSLFEEM 291
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
R PD TYTE+IRG K G +A + Y +M + P+ +
Sbjct: 292 RYMYCRPDVFTYTELIRGLGKAGRIDEAYHFYHEMQREDCKPDTV 336
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++++ + + PD Y LI A + G+ + A+++ M++ + P ++ YT +I
Sbjct: 215 ELYNEMSNEGHCHPDTVTYSALISAFCKLGRQDSAIRLLNEMKENGMQPTAKIYTMIISL 274
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K + A++++E+M P+ + L++GL
Sbjct: 275 FFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGL 310
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y +I A ++GK+ EA + + MRK+ PD TY VI G K G A+A I
Sbjct: 230 PDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVI 289
Query: 200 YEDMIKSPDP-PEELPFRILLKGLLPHPLL 228
+ M +S D P+ + + ++ GL +L
Sbjct: 290 LDQMQESGDVLPDVVTYSTVINGLCKSDML 319
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L + + + A K+ D + K PD Y +I L + G++ EA + + M++
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGC-NPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRA 367
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR-- 229
P+ TYT +I G K +A + E+M + PP + + ++ GL ++
Sbjct: 368 GCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEA 427
Query: 230 ----SKVKKDFEELFPEKHAY 246
++K E P+ Y
Sbjct: 428 QQLVQRMKDGRAECSPDAATY 448
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K PDA+ Y LI L + K+ EA Q+ M PD Y+ +I F K G
Sbjct: 189 KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKL 248
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A ++M K P+ + + ++ GL
Sbjct: 249 LEAQKTLQEMRKQRKSPDVVTYNTVIDGLC 278
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
I D +++ PD Y +I L ++ + EA ++ + M K PD TYT +I G
Sbjct: 289 ILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGL 348
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K G +A + + M ++ P + + L+ GL
Sbjct: 349 CKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLC 384
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PDA+ + +I A+A G ++ AM SM + P+ TYT +I F +
Sbjct: 17 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVVTYTALIAAFARAKKL 73
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK---VKKDFEELFP 241
+AM + E+M + PP + + +L+ L ++ + VKK E F
Sbjct: 74 EEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFA 124
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI A AR K+ EAM++ E MR+ P+ TY ++ K A ++
Sbjct: 55 PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+ P + F L+ G
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFC 138
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 130 DIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+++K + + P+ + L+ + G +++A ++ M + + P+ TY+ +I G
Sbjct: 113 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 172
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K +A + E+M S P+ + L+ GL
Sbjct: 173 CKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLC 208
>gi|7413543|emb|CAB86023.1| putative protein [Arabidopsis thaliana]
Length = 880
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+I+ K++ +PD + Y I A ++ G MN A Q E M + P+ +TYT +I+G+
Sbjct: 747 DLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 806
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P A++ YE+M P++ + LL LL
Sbjct: 807 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLL 842
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+++A++V M++E + + +TY+ +I GF+K
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 535
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+A ++EDM+K P+
Sbjct: 536 ANAFAVFEDMVKEGMKPD 553
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + K+ +PD +Y ++I A G M+ A+Q + M+K P ++T+ +I
Sbjct: 538 AFAVFEDMVKEG-MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G ++ +++ M + P F L+ GL+
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y LI AR G + EA + + M+KE + PD TYT I K G A
Sbjct: 725 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 784
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M P + L+KG
Sbjct: 785 EEMEALGVKPNIKTYTTLIKG 805
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + + + PD Y LI + ++ +AM ++E M +++L P++ TY+ ++
Sbjct: 323 AVKVFDTMVCKG-FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLM 381
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G G DA+ ++ +M+ P+ + + ILL
Sbjct: 382 HGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILL 416
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ +QP+ Y LI L + G + A+++ SM + + PD YT +I KD
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 217
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A N++ +MI P + L+ L
Sbjct: 218 AFNLFSEMIHQGISPSIFTYNSLIHALC 245
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I + R G++ A ++ ++ + L P+ TYT +I G + G A+A +
Sbjct: 442 PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 501
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P + ++ +G L
Sbjct: 502 FGEMKRKGYSPNGCTYNLITRGFL 525
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L ++ + + A + D++ K+ +P+ Y L+ +M+EA++V+++M
Sbjct: 274 TVVDALCKEGKVMEAHDVVDMMIKRG-VEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC 332
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD +Y+ +I G+ K AM ++E+M + P + + L+ GL
Sbjct: 333 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLC 385
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + +++EA+ + +++ ++ PD Q YT VI G + G A ++
Sbjct: 407 PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDL 466
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ ++ P + I++ GL LL ++ K F E+ ++ Y P
Sbjct: 467 FSNLSSKGLHPNVWTYTIMINGLCQQGLL-AEASKLFGEM--KRKGYSP 512
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QP+ + LI L GK+ E + +++ M E P+ TY +I G K GS + A+
Sbjct: 125 HQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAI 184
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ + + ++ L
Sbjct: 185 RLLRSMEQGNCQPDVVVYTSIIDSLC 210
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + Y +I L + G + EA +++ M+++ P+ TY + RGFL++ +
Sbjct: 476 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 535
Query: 199 IYEDMI 204
+ ++M+
Sbjct: 536 LLQEML 541
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ I+ ++ AL + GK+ EA V + M K + P+ TY ++ G +A+ +
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 326
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ P+ + + L+ G
Sbjct: 327 FDTMVCKGFAPDVVSYSTLING 348
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + PD TY VI
Sbjct: 394 LFDLMLG-DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 452
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 453 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 497
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y +LI + TG+ EA++V++ MR+ + PD T + ++ K G +A ++
Sbjct: 300 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 359
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P+ + I+L G
Sbjct: 360 FDTMAMKGQNPDVFSYNIMLNG 381
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 105 LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+ +DIV +++ L + + A IFD+ + PDA +Y L+ GKM +A
Sbjct: 508 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH-PDAVVYSMLMDGYCLVGKMEKA 566
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++V+++M + P+ Y ++ G+ K G + ++++ +M++ P + + I++ G
Sbjct: 567 LRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDG 626
Query: 222 LL 223
L
Sbjct: 627 LF 628
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +PD Y+ +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 426 AMIIFNEMRDHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 484
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
+GF GS A + +++ +
Sbjct: 485 QGFCTHGSLLKAKELISEIMNN 506
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+ PD L+ +L + GK+ EA V+++M + PD +Y ++
Sbjct: 321 AVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 379
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G D ++++ M+ P+ F +L+K
Sbjct: 380 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 416
Score = 40.0 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + P+ Y VI GF K+G A
Sbjct: 193 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 252
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+++++M++ PP+ + + ++ L
Sbjct: 253 DLFKEMVQRGIPPDLVTYNSVVHAL 277
>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
urticoides]
Length = 412
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM+ A +++ M + L P+ T+T +I G K+G AM
Sbjct: 190 QPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAME 249
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 250 IYKQMLSQSLLPDLITYNTLIYGLC 274
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 226 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 286 IDEMSMKGLKPDKFTYTTLIDGCC 309
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 246 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTL 304
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 305 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 344
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 141 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 198
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ A ++++M+ P + F L+ G
Sbjct: 199 LINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDG 237
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD+ TYT ++ F K G
Sbjct: 326 QENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVW 385
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M + P + + +L+ G
Sbjct: 386 KGSKLLKEMQRDGHAPSVVTYNVLMNG 412
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + PD TY VI
Sbjct: 381 LFDLMLG-DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 439
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 440 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 484
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y +LI + TG+ EA++V++ MR+ + PD T + ++ K G +A ++
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 346
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P+ + I+L G
Sbjct: 347 FDTMAMKGQNPDVFSYNIMLNG 368
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 105 LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+ +DIV +++ L + + A IFD+ + PDA +Y L+ GKM +A
Sbjct: 495 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH-PDAVVYSMLMDGYCLVGKMEKA 553
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++V+++M + P+ Y ++ G+ K G + ++++ +M++ P + + I++ G
Sbjct: 554 LRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDG 613
Query: 222 LL 223
L
Sbjct: 614 LF 615
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +PD Y+ +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 413 AMIIFNEMRDHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 471
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
+GF GS A + +++ +
Sbjct: 472 QGFCTHGSLLKAKELISEIMNN 493
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+ PD L+ +L + GK+ EA V+++M + PD +Y ++
Sbjct: 308 AVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G D ++++ M+ P+ F +L+K
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 403
Score = 40.0 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + P+ Y VI GF K+G A
Sbjct: 180 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 239
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+++++M++ PP+ + + ++ L
Sbjct: 240 DLFKEMVQRGIPPDLVTYNSVVHAL 264
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + PD TY VI
Sbjct: 384 LFDLMLG-DGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 442
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 443 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAK 487
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y +LI + TG+ EA++V++ MR+ + PD T + ++ K G +A ++
Sbjct: 290 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDV 349
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P+ + I+L G
Sbjct: 350 FDTMAMKGQNPDVFSYNIMLNG 371
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +PD Y+ +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 416 AMIIFNEMRDHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLI 474
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
+GF GS A + +++ +
Sbjct: 475 QGFCTHGSLLKAKELISEIMNN 496
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 63/122 (51%), Gaps = 4/122 (3%)
Query: 105 LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+ +DIV +++ L + + A IFD+ + PDA +Y L+ GKM +A
Sbjct: 498 MHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLH-PDAVVYNMLMDGYCLVGKMEKA 556
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++V+++M + P+ Y ++ G+ K G + ++++ +M++ P + + I++ G
Sbjct: 557 LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDG 616
Query: 222 LL 223
L
Sbjct: 617 LF 618
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+ PD L+ +L + GK+ EA V+++M + PD +Y ++
Sbjct: 311 AVRVFKEMRRHS-ILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 369
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G D ++++ M+ P+ F +L+K
Sbjct: 370 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKA 406
Score = 40.0 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + P+ Y VI GF K+G A
Sbjct: 183 PDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKAC 242
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+++++M++ PP+ + + ++ L
Sbjct: 243 DLFKEMVQRGIPPDLVTYNSVVHAL 267
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K G AM
Sbjct: 209 QPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKRMLSQSLLPDLITYNTLIYGLC 293
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M+ P+++ + L+ G
Sbjct: 305 IDEMVMKGLKPDKITYTTLIDGCC 328
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDG 256
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 265 LAMEIYKRMLSQSLL-PDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 363
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD+ TYT +I F K G +
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M ++ P + + +L+ G
Sbjct: 411 KEMQRNGHVPSVVTYNVLMNG 431
>gi|9758456|dbj|BAB08985.1| membrane-associated salt-inducible protein-like [Arabidopsis
thaliana]
Length = 949
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+I+ K++ +PD + Y I A ++ G MN A Q E M + P+ +TYT +I+G+
Sbjct: 747 DLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 806
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P A++ YE+M P++ + LL LL
Sbjct: 807 ARASLPEKALSCYEEMKAMGIKPDKAVYHCLLTSLL 842
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+++A++V M++E + + +TY+ +I GF+K
Sbjct: 476 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 535
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+A ++EDM+K P+
Sbjct: 536 ANAFAVFEDMVKEGMKPD 553
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + K+ +PD +Y ++I A G M+ A+Q + M+K P ++T+ +I
Sbjct: 538 AFAVFEDMVKEG-MKPDVILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 596
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G ++ +++ M + P F L+ GL+
Sbjct: 597 HGYAKSGDMRRSLEVFDMMRRCGCVPTVHTFNGLINGLV 635
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y LI AR G + EA + + M+KE + PD TYT I K G A
Sbjct: 725 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 784
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M P + L+KG
Sbjct: 785 EEMEALGVKPNIKTYTTLIKG 805
>gi|357486943|ref|XP_003613759.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515094|gb|AES96717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 733
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 52/90 (57%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L GK+ EA ++W+ M ++ + P++ TY +I+GF K + + + + E+M+
Sbjct: 268 YNTLIAGLCEGGKLCEAARLWDEMVEKGVAPNAFTYNMLIKGFCKVRNAKEGIRVLEEML 327
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
++ P + + IL+ G+L ++ ++ K
Sbjct: 328 ENRCFPNKSTYTILIDGILLSGGMKQEINK 357
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 10/147 (6%)
Query: 105 LKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
L +V VL E E+ A +++ ++ +++ A + L L + GK+ EA +
Sbjct: 197 LCCKVVDVLCEEGNVEK---ACEVWRMVSRKNCGLNGAVVVSTLTHWLCKKGKVLEARNM 253
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++ K L TY +I G + G +A ++++M++ P + +L+KG
Sbjct: 254 FDEFGK-GLVASLLTYNTLIAGLCEGGKLCEAARLWDEMVEKGVAPNAFTYNMLIKGFCK 312
Query: 225 HPLLRSKVKKDFEEL-----FPEKHAY 246
+ ++ EE+ FP K Y
Sbjct: 313 VRNAKEGIRV-LEEMLENRCFPNKSTY 338
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+A+ Y LI + E ++V E M + FP+ TYT +I G L G +N
Sbjct: 298 PNAFTYNMLIKGFCKVRNAKEGIRVLEEMLENRCFPNKSTYTILIDGILLSGGMKQEIN 356
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + + + PD Y LI + ++ +AM ++E M +++L P++ TY+ ++
Sbjct: 332 AVKVFDTMVCKG-FAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLM 390
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G G DA+ ++ +M+ P+ + + ILL
Sbjct: 391 HGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILL 425
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ +QP+ Y LI L + G + A+++ SM + + PD YT +I KD
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQ 226
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A N++ +MI P + L+ L
Sbjct: 227 AFNLFSEMIHQGISPSIFTYNSLIHALC 254
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I + R G++ A ++ ++ + L P+ TYT +I G + G A+A +
Sbjct: 451 PDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKL 510
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P + ++ +G L
Sbjct: 511 FGEMKRKGYSPNGCTYNLITRGFL 534
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L ++ + + A + D++ K+ +P+ Y L+ +M+EA++V+++M
Sbjct: 283 TVVDALCKEGKVMEAHDVVDMMIKRG-VEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVC 341
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD +Y+ +I G+ K AM ++E+M + P + + L+ GL
Sbjct: 342 KGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLC 394
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + +++EA+ + +++ ++ PD Q YT VI G + G A ++
Sbjct: 416 PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDL 475
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ ++ P + I++ GL LL ++ K F E+ ++ Y P
Sbjct: 476 FSNLSSKGLHPNVWTYTIMINGLCQQGLL-AEASKLFGEM--KRKGYSP 521
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QP+ + LI L GK+ E + +++ M E P+ TY +I G K GS + A+
Sbjct: 134 HQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAI 193
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ + + ++ L
Sbjct: 194 RLLRSMEQGNCQPDVVVYTSIIDSLC 219
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 36/66 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + Y +I L + G + EA +++ M+++ P+ TY + RGFL++ +
Sbjct: 485 HPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQ 544
Query: 199 IYEDMI 204
+ ++M+
Sbjct: 545 LLQEML 550
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ I+ ++ AL + GK+ EA V + M K + P+ TY ++ G +A+ +
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 335
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ P+ + + L+ G
Sbjct: 336 FDTMVCKGFAPDVVSYSTLING 357
>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
macrophylla]
Length = 431
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ +T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLC 293
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ I+ LI + G+++ AM++++ M + L PD TY +I G K G ++
Sbjct: 245 PNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCC 328
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + + + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQS-LLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +E+ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLC 363
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDG 256
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD++TYT +I F K G +
Sbjct: 351 DEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHVPSVVTYNVLMNG 431
>gi|357131125|ref|XP_003567192.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like, partial [Brachypodium distachyon]
Length = 457
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ ++ G++++A VWE M++ +L PD+++Y +RG + +G DA+ +
Sbjct: 241 PDNISFNTLLNGFSKNGRVDDAEAVWEMMKERNLEPDTKSYNAKLRGLVAEGRIEDAVAV 300
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYD 247
E M K P+ + + L++G L KK ++ E P K Y+
Sbjct: 301 VERMEKEGPKPDTVSYNELIRGYCSAGRLED-AKKLYDGLVKNECAPNKGTYE 352
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +++++++++ +PD Y + L G++ +A+ V E M KE PD+ +Y E+I
Sbjct: 262 AEAVWEMMKERNL-EPDTKSYNAKLRGLVAEGRIEDAVAVVERMEKEGPKPDTVSYNELI 320
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
RG+ G DA +Y+ ++K+ P + + LL LL
Sbjct: 321 RGYCSAGRLEDAKKLYDGLVKNECAPNKGTYETLLPRLL 359
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 105 LKMDIVAVLIELERQEE-TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
M AVL R +E LA +I P Y Y LI AL + ++ A+
Sbjct: 170 CTMTFNAVLTAYSRAKEFDALATAFQEIPASHPLVVPSVYSYNILISALCQKPALSAALN 229
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
V M K + PD+ ++ ++ GF K+G DA ++E M + P+ + L+GL+
Sbjct: 230 VVTLMEKCGVLPDNISFNTLLNGFSKNGRVDDAEAVWEMMKERNLEPDTKSYNAKLRGLV 289
>gi|255573471|ref|XP_002527661.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532966|gb|EEF34732.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 766
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 139 QP-DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
QP ++Y Y +I R G+++EA ++ E MR + P + +Y+ +I G K G A+
Sbjct: 319 QPLNSYCYNAVIHEFCRNGELHEAFELLEDMRSHGISPTAYSYSILIDGLCKKGQVEKAL 378
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
++ E+M++S P + + L GL L + F L E + +D
Sbjct: 379 DLIEEMVQSNVKPSLVTYSSLFDGLCKSGLTEISLSM-FHNLGAEGYKHD 427
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 21/134 (15%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++Y Y +I L + K +A +V M K ++FP + Y +I G+ K +P A+ +
Sbjct: 531 PNSYTYNIVIKWLCKEQKTEKAWEVLPVMLKNNVFPCAIHYNTLIDGYAKQSNPTKALLL 590
Query: 200 YEDMIKSPDPPEELPFRILL---------------------KGLLPHPLLRSKVKKDFEE 238
Y M+K PP + + +L+ KGL+P ++ + + F +
Sbjct: 591 YAKMLKVGIPPSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCK 650
Query: 239 LFPEKHAYDPPEEI 252
+ K A+ EE+
Sbjct: 651 VGDMKSAWALYEEM 664
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI + KM EA +++ M K+ L PD +T +I GF K G A +
Sbjct: 601 PSIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFCKVGDMKSAWAL 660
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
YE+M + P + + L+ G
Sbjct: 661 YEEMSQWGKSPNVVTYTCLIDG 682
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 1/123 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AV+ E R E A ++ + +R P AY Y LI L + G++ +A+ + E M +
Sbjct: 328 AVIHEFCRNGELHEAFELLEDMRSHG-ISPTAYSYSILIDGLCKKGQVEKALDLIEEMVQ 386
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
++ P TY+ + G K G +++++ ++ + + + L+ G + + S
Sbjct: 387 SNVKPSLVTYSSLFDGLCKSGLTEISLSMFHNLGAEGYKHDVISYNTLINGFVLQRDMGS 446
Query: 231 KVK 233
K
Sbjct: 447 ACK 449
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L ++++T A ++ ++ K + + P A Y LI A+ +A+ ++ M K + P
Sbjct: 543 LCKEQKTEKAWEVLPVMLKNNVF-PCAIHYNTLIDGYAKQSNPTKALLLYAKMLKVGIPP 601
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT +I F +A ++++MIK P+E+ F ++ G
Sbjct: 602 SIVTYTMLINMFSNRSKMQEAYYLFKEMIKKGLVPDEIIFTCIIAGFC 649
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L ER E + +F+ + K +P+ Y L+ L + G+++EA ++WE M ++
Sbjct: 154 LCSGERMSEAFV---LFEYMAKAGC-EPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKS 209
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL-----KG------ 221
PD YT + G K A+A + M+ + + F ++ KG
Sbjct: 210 CVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQ 269
Query: 222 --LLPHPLLRS----KVKKDFEELFPEKHAYDPPEEIFGKL 256
++ H L RS + K FEE+ H P E+F L
Sbjct: 270 NQMIEH-LCRSGMLDEACKTFEEMISRNHP--PSAELFNTL 307
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + G+++EA+ M PD +YT +I + G A A I
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+++M+K P+ + + LL GL + L
Sbjct: 502 FQEMVKRGVLPDTVLYHSLLDGLARNGL 529
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ L + GK++ A + E M KE +FPDS T ++ K G A++
Sbjct: 371 SPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALS 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
E M P+ + + LL GL
Sbjct: 431 HLETMKARGSTPDLVTYNTLLDGLC 455
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF + PD + L+ L +M+EA ++E M K P+ +Y+ ++
Sbjct: 127 ALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A ++E+M++ P+ + + + GL
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLC 225
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD++ ++ AL++ GK++ A+ E+M+ PD TY ++ G K G +A+
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITF 466
Query: 200 YEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKK 234
M+ + P+ + I++ L H + + VK+
Sbjct: 467 LAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + Y ++ L + G++++A ++ +R+ + + TY+ VI G K DA+
Sbjct: 69 YPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDAL 128
Query: 198 NIYEDMIKSPDP-PEELPFRILLKGLLP 224
I++ M P+ + F LLKGL
Sbjct: 129 EIFKTMSSGGGCVPDVVTFNSLLKGLCS 156
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
V++FD + +Q YQ + Y + ALA+ A + ++ M++ PD TY+ V+R
Sbjct: 22 VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A + + +S + + +++ G
Sbjct: 82 GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCC 119
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I AL R+G+ A +++ M K + PD+ Y ++ G ++G A+ +
Sbjct: 477 PDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL 536
Query: 200 YEDMIKSPD 208
+ + PD
Sbjct: 537 LKTSLCKPD 545
>gi|194705728|gb|ACF86948.1| unknown [Zea mays]
gi|414591270|tpg|DAA41841.1| TPA: fertility restorer [Zea mays]
Length = 563
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L R GK++EA V + M +E P TYT +++G+ + G +A N+
Sbjct: 164 PDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYCRQGQIEEATNL 223
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M + PP + + +L++ L
Sbjct: 224 IGFMEDAGCPPNAVTYNVLIRALC 247
>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A R G+M EA +++ MR+ L PD TY + + D DA++
Sbjct: 521 KPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASYAADSMFEDAID 580
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ MIK P + + ++ G H
Sbjct: 581 VVRYMIKHGCKPNQNTYNSVVDGYCKH 607
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 110 VAVLIELERQEETI-LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
VAV+I + +E + +A + + + K D + D Y Y LI A G+ EA+ V++ M
Sbjct: 1 VAVIISMLGKEGKVSVAASLLNDLHK-DGFGLDVYAYTSLITACVSNGRYREAVMVFKKM 59
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAM-NIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+E P TY ++ + K G P + + ++E M + P+E + L+ L
Sbjct: 60 EEEGCKPTLITYNVILNVYGKMGMPWNKIKGLFEGMKNAGVLPDEYTYNTLITCCRRGSL 119
Query: 228 LR--SKVKKDFEEL--FPEKHAYDPPEEIFGK 255
+ V KD + + P+K Y+ +++GK
Sbjct: 120 HEEAAAVFKDMKSMGFVPDKVTYNALLDVYGK 151
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ P Y LI A AR G + EAM++ M + + D TYT ++ GF++ G
Sbjct: 168 NGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDES 227
Query: 196 AMNIYEDMIKSPDPPEELPFRILLK 220
AM ++ +M + P F L+K
Sbjct: 228 AMRVFAEMRAAGCKPNICTFNALIK 252
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+K+F+ I K PD + L+ + G +E V++ M++ P+ TY +I
Sbjct: 264 MKVFEEI-KNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLIS 322
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE-KH 244
+ + GS AM+IY+ M+++ P+ + +L L R + + E++F E K
Sbjct: 323 AYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLA-----ALARGGLWEQSEKIFAEMKD 377
Query: 245 AYDPPEEI 252
P E+
Sbjct: 378 GRCKPNEL 385
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P+ Y LI A +R G ++AM +++ M + + PD TY V+ + G
Sbjct: 306 KRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALARGGLW 365
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ I+ +M P EL + LL
Sbjct: 366 EQSEKIFAEMKDGRCKPNELTYCSLL 391
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD Y L+ ++ + EAM+V M P TY +I + +DG
Sbjct: 131 KSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYARDGLL 190
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+AM + M++ + + LL G +
Sbjct: 191 KEAMELKNQMVEGGINLDVFTYTTLLSGFV 220
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI R EA V++ M+ PD TY ++ + K +AM +
Sbjct: 102 PDEYTYNTLITCCRRGSLHEEAAAVFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEV 161
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+M + P + + L+ LL+
Sbjct: 162 LREMEVNGCSPSIVTYNSLISAYARDGLLK 191
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K D + ++ LI A A+ G M+EAM + M+ + L PD TY+ +I + G
Sbjct: 283 KGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRL 342
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP-LLRSK 231
ADA++ + MI + P + + L++G H L+++K
Sbjct: 343 ADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAK 381
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+++ + ++ + A IFD++ K + D ++ LI G+M +A V ++M
Sbjct: 402 SIVHSICKEGRVMDAHHIFDLV-KDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMIS 460
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD+ TY ++ G+ K G D +N++ +M P + + I+L GL
Sbjct: 461 AGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLF 513
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADAM 197
PDA+ Y ++ L + +A+ + M KE+ PD TY VI GF K+G A
Sbjct: 77 PDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKAC 136
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
N+Y +M++ P+ + ++ L
Sbjct: 137 NLYHEMMQQGFVPDVVTHNSIINALC 162
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ ++G++++ + ++ M + + P + TY ++ G + G A +
Sbjct: 465 PDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKM 524
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+MI + I+LKGL
Sbjct: 525 LHEMIGCGTTVSLPTYNIILKGLC 548
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 46 AHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLL 105
A P LGL + GR + + K L + KR D +K + R+
Sbjct: 21 ARRPELGLAFF--GRLLRTGLKADKTAANTVLKCLCCTKRTDDA-------VKVLLRRMT 71
Query: 106 KMDIV----AVLIELERQEETILAVKIFDIIR----KQDWYQPDAYIYKDLIIALARTGK 157
++ V + I L+R + + + D++R ++ PD Y +I + GK
Sbjct: 72 ELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGK 131
Query: 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRI 217
+ +A ++ M ++ PD T+ +I K + +A + M+ + PP ++ +
Sbjct: 132 IGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTS 191
Query: 218 LLKG 221
++ G
Sbjct: 192 MIHG 195
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 57.4 bits (137), Expect = 6e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y LI A + G M+EAM ++ M++ + PD+ TY VI F + G ADAM+ +
Sbjct: 401 DHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKF 460
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
MI P+ + + L++G H
Sbjct: 461 NQMIAMGLKPDTIVYNSLIQGFCMH 485
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+++ L ++ + A IFD++ +PD + LI GKM +A V ++M
Sbjct: 513 SIINSLCKEGRVVEAQDIFDLVIHIG-ERPDVITFNSLIDGYGLVGKMEKAFGVLDAMIS 571
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD TY+ ++ G+ ++G D + ++ +M+ P + + I+L GL
Sbjct: 572 VGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLF 624
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+ Y +I A +R G++ +AM + M L PD+ Y +I+GF G+ A +
Sbjct: 435 PDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKEL 494
Query: 200 YEDMIKSPDP-PEELPFRILLKGL 222
+M+ P P + F ++ L
Sbjct: 495 ISEMMSRGIPRPNTVFFNSIINSL 518
Score = 40.8 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + + +L + GK EA + ++SM + PD TY+ ++ G+ +G D +N+
Sbjct: 330 PDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNL 389
Query: 200 YEDM 203
+ M
Sbjct: 390 FNSM 393
Score = 40.0 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
I +I A+ + K EA ++++S+ L P++ TY +I LK+GS +A N++ M
Sbjct: 685 IINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLM 744
Query: 204 IKSPDPPEELPFRILLKGLL 223
KS P +++ LL
Sbjct: 745 EKSGCAPSSRLLNNIIRVLL 764
Score = 40.0 bits (92), Expect = 0.88, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y ++ +L + A+ + +M K+ P+ +Y VI GF ++G + A
Sbjct: 187 EPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKA 246
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYD 247
N++ +M++ P+ + + + L +LR + FE P+K Y+
Sbjct: 247 CNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFE---PDKVTYN 301
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ R G++++ + ++ M + + P + TY ++ G DG A
Sbjct: 575 EPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +MI+S + I+L GL
Sbjct: 635 MCHEMIESGTTMDISTCGIILGGL 658
Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 35/84 (41%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y +I + G+ E ++ M + L PD T + K G +A
Sbjct: 293 FEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAA 352
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
++ M P+ + + +LL G
Sbjct: 353 EFFDSMAAKGHKPDLVTYSVLLHG 376
Score = 37.0 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 19/91 (20%), Positives = 43/91 (47%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
+++K P+ Y +I R G++++A ++ M ++ + PD TY+ I K
Sbjct: 216 MVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKA 275
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ A + MI + P+++ + ++ G
Sbjct: 276 RAMDKAELVLRQMISNGFEPDKVTYNCMIHG 306
>gi|168024892|ref|XP_001764969.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683778|gb|EDQ70185.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 497
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
V++F+ +++Q QPDA +Y LI L+RT +AM+++ M K P TYT ++
Sbjct: 321 VQVFERMKEQGI-QPDANVYTTLIDVLSRTRGHTQAMEMYAEMVKAKCKPTVDTYTAILH 379
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G A+ ++E + PP + ILLK L
Sbjct: 380 SLARSGRVKAAITLFEKLPSFGVPPSIATYTILLKACL 417
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
L++ EE I+ K ++ +P+ + Y +I++L + ++ A +++E M K
Sbjct: 104 ALVKGGCHEEAIMVFKEM----QEAGCRPNIFTYSVVILSLVESMQLEAACELYERMTKL 159
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
P+S Y+ +IR K A+ Y +MI S P + L+ LL L +
Sbjct: 160 QYKPNSTAYSVLIRAHAKGPDMEKAIYFYREMIDSGLTPSQ-----SLRSLLSEALTKQG 214
Query: 232 VKKDFEELFP-EKHAYDPPEEIFGKL 256
+ EEL + Y+P +F ++
Sbjct: 215 RLNEAEELTQITQENYNPTRHMFTRI 240
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ YIY I AL + G EA+ V++ M++ P+ TY+ VI ++ A
Sbjct: 92 KPNEYIYSSYIDALVKGGCHEEAIMVFKEMQEAGCRPNIFTYSVVILSLVESMQLEAACE 151
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHP 226
+YE M K P + +L++ P
Sbjct: 152 LYERMTKLQYKPNSTAYSVLIRAHAKGP 179
>gi|297736301|emb|CBI24939.3| unnamed protein product [Vitis vinifera]
Length = 485
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 23/167 (13%)
Query: 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE----------------LERQE 120
LFV G + + LQ+ K + R+L+ + IE LE +
Sbjct: 41 LFVRAGKRSSGSSQNGLQRQPKKDLSRILRTEAAISGIERKANSRKYSTLWPKAVLEALD 100
Query: 121 ETI------LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
E I A+KIF ++RKQ WY+P Y L++ L + + +A ++E M E L
Sbjct: 101 EAIRENRYESALKIFGLLRKQHWYEPRCQTYTKLLMMLGKCKQPEQASLLFEVMLSEGLR 160
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLK 220
P YT ++ + G A EDM D P+ + IL+K
Sbjct: 161 PTLDVYTALVSAYGHSGQLDKAFCTVEDMKSVSDCKPDVYTYSILIK 207
>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
Length = 498
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 109 IVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I++ LI L ++ + A K+FD + P Y LI + G++NEA ++W+
Sbjct: 335 IMSTLIHWLCKEGKVWEARKLFDEFEQGT--IPSLMTYNTLIAGMCERGELNEAGRLWDD 392
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
M ++ P++ TY +I+GF+K G + + I E+M+ + P + + +L++GL
Sbjct: 393 MVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGL 447
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD I LI L + GK+ EA ++++ ++ P TY +I G + G +A +
Sbjct: 331 PDNAIMSTLIHWLCKEGKVWEARKLFDEF-EQGTIPSLMTYNTLIAGMCERGELNEAGRL 389
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKHAY 246
++DM++ P + +L+KG + +++ V+ EE+ P K Y
Sbjct: 390 WDDMVEKRCRPNAFTYNMLIKGFMKAGVVKEGVRI-LEEMLDNGCLPNKSTY 440
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + LI AL + + A++V++ M + P+ TYT ++ GF+ G +A +
Sbjct: 156 PNVFSFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKV 215
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFG 254
+ ++ P+ + +L+ G L +K + + E + +P E +G
Sbjct: 216 FSEISDKGWLPDATTYTVLMVGYCKQGRLSDAIKV-MDNM--EYNGVEPNEVTYG 267
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD + P+ Y ++ G + A +V+ + + PD+ TYT ++
Sbjct: 177 ALKVFDEMPTMGMI-PNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPDATTYTVLM 235
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ K G +DA+ + ++M + P E+ + +++
Sbjct: 236 VGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMI 270
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++ K+ +P+A+ Y LI + G + E +++ E M P+ TYT +I G +
Sbjct: 392 DMVEKR--CRPNAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQE 449
Query: 190 DGSPADA 196
G D
Sbjct: 450 SGMEGDV 456
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 24/161 (14%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L ER E + +F+ + K +P+ Y L+ L + G+++EA ++WE M ++
Sbjct: 154 LCSGERMSEAFV---LFEYMAKAGC-EPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKS 209
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL-----KG------ 221
PD YT + G K A+A + M+ + + F ++ KG
Sbjct: 210 CVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQ 269
Query: 222 --LLPHPLLRS----KVKKDFEELFPEKHAYDPPEEIFGKL 256
++ H L RS + K FEE+ H P E+F L
Sbjct: 270 NQMIEH-LCRSGMLDEACKTFEEMISRNHP--PSAELFNTL 307
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + G+++EA+ M PD +YT +I + G A A I
Sbjct: 442 PDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAI 501
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+++M+K P+ + + LL GL + L
Sbjct: 502 FQEMVKRGVLPDTVLYHSLLDGLARNGL 529
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ L + GK++ A + E M KE +FPDS T ++ K G A++
Sbjct: 371 SPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALS 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
E M P+ + + LL GL
Sbjct: 431 HLETMKARGSTPDLVTYNTLLDGLC 455
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF + PD + L+ L +M+EA ++E M K P+ +Y+ ++
Sbjct: 127 ALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLL 186
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A ++E+M++ P+ + + + GL
Sbjct: 187 DGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLC 225
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD++ ++ AL++ GK++ A+ E+M+ PD TY ++ G K G +A+
Sbjct: 407 PDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITF 466
Query: 200 YEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKK 234
M+ + P+ + I++ L H + + VK+
Sbjct: 467 LAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKR 508
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + Y ++ L + G++++A ++ +R+ + + TY+ VI G K DA+
Sbjct: 69 YPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDAL 128
Query: 198 NIYEDMIKSPDP-PEELPFRILLKGLLP 224
I++ M P+ + F LLKGL
Sbjct: 129 EIFKTMSAGGGCVPDVVTFNSLLKGLCS 156
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
V++FD + +Q YQ + Y + ALA+ A + ++ M++ PD TY+ V+R
Sbjct: 22 VRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLR 81
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A + + +S + + +++ G
Sbjct: 82 GLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCC 119
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I AL R+G+ A +++ M K + PD+ Y ++ G ++G A+ +
Sbjct: 477 PDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALEL 536
Query: 200 YEDMIKSPD 208
+ + PD
Sbjct: 537 LKTSLCKPD 545
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 39/91 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD ++K ++ L + GK +A +V E M D+ TY V+RG K G
Sbjct: 538 KTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKV 597
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
A + +D ++ E L G L
Sbjct: 598 DKARQLVDDASETHTSVERLSMEKAEAGALS 628
>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 418
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + K++EA +++ M L P+ T+T +I K+G AM
Sbjct: 203 QPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQGFSPDLITYNTLIYGLC 287
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I+ + Q + PD Y LI L + G + + + + M L PD TYT +I
Sbjct: 260 AMEIYKQMLSQG-FSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLI 318
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G A + MIK + + + L+ GL
Sbjct: 319 DGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLC 357
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G ++ AM++++ M + PD TY +I G K G +
Sbjct: 239 PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRAL 298
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + P+++ + L+ G
Sbjct: 299 IDEMSMNGLKPDKITYTTLIDGCC 322
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ ++ E A +FD I K W +P + L+ R G ++E ++ +M
Sbjct: 142 VMHRFCKEGEMRRAQSVFDAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHA 199
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ PD TY+ +I G K+ +A ++ +M+ P + F L+
Sbjct: 200 SGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLI 248
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y L+ L + G+ ++A +++ M L PD+ TYT +I F K G A +
Sbjct: 345 DNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLL 404
Query: 201 EDMIKSPDPP 210
++M + P
Sbjct: 405 KEMQRDGHVP 414
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y LI L++ G++ EA ++M PD+ TYT ++ G + G
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A+++ E+M P + + LL GL L+
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 386
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++Y ++ K +EA+ V++ M++E + PD TY +I G K G +A
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEAR 320
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M+ + P+ + L+ G+
Sbjct: 321 MYLKTMVDAGYEPDTATYTSLMNGMC 346
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD Y L+ + R G+ A+ + E M P+ TY ++ G K M
Sbjct: 331 YEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGM 390
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+YE M S E + L++ L+
Sbjct: 391 ELYEMMKSSGVKLESNGYATLVRSLV 416
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 15/128 (11%)
Query: 95 KFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154
F+ H+ + + +V ++ R + FD+ +PD + LI +
Sbjct: 198 NFLLKHLCKCKDLHVVYEFVDEMRDD--------FDV-------KPDLVSFTILIDNVCN 242
Query: 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP 214
+ + EAM + + PD Y +++GF ++A+ +Y+ M + P+++
Sbjct: 243 SKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQIT 302
Query: 215 FRILLKGL 222
+ L+ GL
Sbjct: 303 YNTLIFGL 310
>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
Length = 484
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGK--MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y+Y LI R K ++EA+ ++++M+ ++P+ TY V+RG K G +A
Sbjct: 357 PDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAY 416
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
I+++M K P + F+++ G++
Sbjct: 417 QIFQEMFKVKCSPNRMTFKVMTMGMI 442
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 107/243 (44%), Gaps = 28/243 (11%)
Query: 2 ATRLFSRSKI----PILAS--IVLQNLT--KNPSKNFSFLAFKPKSPIV-DFVAHEPILG 52
A R F R P L S I++Q +NP + + +L + I D A+ +L
Sbjct: 63 AVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVL- 121
Query: 53 LRQYHD-GRPRGSLWR----GKKLIGKEALF--VILGLKRFKDDEEKLQKFIKT-HVL-- 102
+ Y D GR +L + GK A + VI GL +F + + F + H L
Sbjct: 122 -KGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVD 180
Query: 103 --RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
+V L + ER E A+K++D++ + + Y DA Y + + +++E
Sbjct: 181 PDGFTYSTLVHGLCQAERLEA---AIKVYDMMLEAN-YDGDAGAYNAMADGFCKERRVDE 236
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLK-DGSPADAMNIYEDMIKSPDPPEELPFRILL 219
A++V ++M + P TY +I G + +A +++ M+ S PP + + ++
Sbjct: 237 ALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMI 296
Query: 220 KGL 222
GL
Sbjct: 297 LGL 299
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA--DA 196
PD Y Y LI A + K++EA + + + + PD YT +I G+ + P +A
Sbjct: 321 SPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEA 380
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ ++++M P + + I+L+GL + + F+E+F K
Sbjct: 381 LLLFQNMKDRRVWPNVITYNIVLRGLCKTGRF-DEAYQIFQEMFKVK 426
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ R LA K FD KQ+ Y+ D Y Y L+ L R + EA++ ++ P
Sbjct: 18 IRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRP 77
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++T +I+ F +P A M PP+ + ++LKG
Sbjct: 78 SLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKG 123
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y +I+ L++ ++ +++++ M K L PD Y +I F+K +A +I
Sbjct: 287 PNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSI 346
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+D ++ P+ + L+ G
Sbjct: 347 LQDAARNHVGPDVYMYTTLISG 368
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 116 LERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
L + EET+ + F + R+ QPD+Y Y LI L + GK+++A ++ + M ++ L
Sbjct: 165 LCKNEETVESA--FRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGL 222
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
P +YT +I G + + +A+ + E+MI + P + L+ GL
Sbjct: 223 SPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLC 272
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y L+ L ++G ++AM++ E M + L P+ TY+ +I G K+G +A+
Sbjct: 258 EPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVE 317
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
I + M P+ + ++ GL
Sbjct: 318 ILDRMRLQGLKPDAGMYGRIISGLCA 343
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y LI L ++ ++EA+++ E M + P+ TY+ ++ G K G + AM
Sbjct: 223 SPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAME 282
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ E M++ P + + L+ GL R V+
Sbjct: 283 LLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVE 317
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+I++ + K P+ Y +I L + G+ +E++++WE M+K + D TY+ +I G
Sbjct: 240 EIWERLVKGSCVYPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMDLFTYSSLICG 299
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
G+ A+ +Y++M+K + + + LL G K+K+ FE
Sbjct: 300 LCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCR----AGKIKESFE 346
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 136 DWY-----QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
DW +PD Y Y +I + ++G + A++V++ M + L PD Y +I GF K
Sbjct: 173 DWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFKR 232
Query: 191 GSPADAMNIYEDMIK-SPDPPEELPFRILLKGLL 223
G I+E ++K S P + + +++ GL
Sbjct: 233 GDYVQGKEIWERLVKGSCVYPNVVTYNVMINGLC 266
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD ++ L+ L GK+ +A+ ++ +M++ + P+ T+ ++ G K A
Sbjct: 566 EPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASV 625
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLP 224
I+ M K+ P+ + + I LKGL
Sbjct: 626 IWACMFKNGFQPDIISYNITLKGLCS 651
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++DW +PD Y L+ L + K++ A+ +W + + L PD + ++ G G
Sbjct: 527 EKDW-KPDMITYSLLMDGLCQGKKIDMALNLWRQVLVKGLEPDVTMHNILMHGLCSAGKI 585
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA+ +Y +M +S P + L+ GL
Sbjct: 586 EDALLLYSNMKQSNCLPNLVTHNTLMDGL 614
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ P+ + L+ L + + A +W M K PD +Y ++G G
Sbjct: 596 KQSNCLPNLVTHNTLMDGLYKARECEMASVIWACMFKNGFQPDIISYNITLKGLCSCGRI 655
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+D + +++D +K+ P + + IL++ +L
Sbjct: 656 SDGIALFDDALKNGILPTSITWYILVRAVL 685
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y I L K+ EA+ VWE +R+ DS TY +I G K+G A+ I ++
Sbjct: 362 YNIFIRGLFENRKVEEAISVWELLRRRGSGADSTTYGVLIHGLCKNGHLNKALKILKEAK 421
Query: 205 KSPDPPEELPFRILLKGL 222
D + + ++ GL
Sbjct: 422 DGGDKLDAFAYSSIVDGL 439
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ + D + Y LI L G ++ A++V++ M K + D TY ++ GF + G
Sbjct: 282 KKNECEMDLFTYSSLICGLCDVGNVDGAVEVYKEMVKRSVVVDVVTYNALLNGFCRAGKI 341
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
++ ++ M+ + + + I ++GL +
Sbjct: 342 KESFELWV-MMGKENCHNVVSYNIFIRGLFEN 372
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + + EA + + M +DL PD +Y VI G +K G A+ +
Sbjct: 147 PNLQTYNILIKISVKKRQFVEAKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEV 206
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M + P+ + + I++ G
Sbjct: 207 FDEMFERGLVPDVMCYNIMIDG 228
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD +R D + P Y LI L +G + A ++ E M + +FPD TYT ++
Sbjct: 393 ASLLFDDLRAGDIH-PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLV 451
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+GF+K+G+ + A +Y++M++ P+ +
Sbjct: 452 KGFVKNGNLSMATEVYDEMLRKGIKPDGYAY 482
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + + D + PD IY I L + G + +A++ + + L PD TYT VI
Sbjct: 498 AFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 557
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
RG+L++G A N+Y++M++ P + + +L+ G
Sbjct: 558 RGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYG 594
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + GK EA +++ +R D+ P TY +I G + G+ A +
Sbjct: 372 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 431
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAY 246
E+M P+ + + L+KG + + L S + ++E+ P+ +AY
Sbjct: 432 KEEMTTQLIFPDVITYTTLVKGFVKNGNL-SMATEVYDEMLRKGIKPDGYAY 482
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G ++ A +V++ M ++ + PD YT G L+ G A +
Sbjct: 442 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRL 501
Query: 200 YEDMIKSP-DPPEELPFRILLKGLL 223
+E+M+ + P+ + + + GL
Sbjct: 502 HEEMVATDHHAPDLTIYNVRIDGLC 526
>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
Group]
gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 543
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ ++L L ++ A +FD + + PD +Y L+ A R+G++NEA +V+ M
Sbjct: 218 LASLLGALSKKRLASEAQAMFDSYK--SVFTPDVVLYTTLVHAWCRSGRLNEAERVFAEM 275
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ + P+ TYT VI + G A + MI S PP F +++
Sbjct: 276 QQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 328
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y LI L++ G++ EA ++M PD+ TYT ++ G + G
Sbjct: 292 KEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGES 351
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A+++ E+M P + + LL GL L+
Sbjct: 352 LGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLM 386
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++Y ++ K +EA+ V++ M++E + PD TY +I G K G +A
Sbjct: 261 FKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEAR 320
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M+ + P+ + L+ G+
Sbjct: 321 MYLKTMVDAGYEPDTATYTSLMNGMC 346
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD Y L+ + R G+ A+ + E M P+ TY ++ G K M
Sbjct: 331 YEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKARLMDKGM 390
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+YE M S E + L++ L+
Sbjct: 391 ELYEMMKSSGVKLESNGYATLVRSLV 416
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 51/111 (45%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L + ++ + + D +R +PD + LI + + + EAM + +
Sbjct: 200 LLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNLREAMYLVSKLGNA 259
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PD Y +++GF ++A+ +Y+ M + P+++ + L+ GL
Sbjct: 260 GFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTLIFGL 310
>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 707
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +IF+ + ++ +P+ Y Y LI L GK EA+Q+ M ++D P+ TY +I
Sbjct: 301 ASEIFEFMMERG-VRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIII 359
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
KD ADA+ I E M K P+ + + LL GL
Sbjct: 360 NKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCA 399
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I+D++ ++ D L+ + ++G +N+AM++W+ + + P+S TYT +I
Sbjct: 443 ALDIYDLLVEK-LGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMI 501
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL----- 239
GF K G A + M S PP + LL L L + + FEE+
Sbjct: 502 DGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSLCKKGTL-DQAWRLFEEMQRDDS 560
Query: 240 FPEKHAYD 247
FP+ +++
Sbjct: 561 FPDVISFN 568
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI A + GKM+EAM + + M+ + L D YT +IRGF G +++++++
Sbjct: 218 LIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERG 277
Query: 208 DPPEELPFRILLKGLL 223
D P + + L++G
Sbjct: 278 DSPCAITYNTLIRGFC 293
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ +++ ++D +P+ Y +I L + + +A+++ E M+K PD+ TY ++
Sbjct: 336 ALQLLNLMLQKD-EEPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLL 394
Query: 185 RGFLKDGSPADAMNIYEDMIK--SPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G G +A + M+K S P+ + F L+ GL L + D +L E
Sbjct: 395 GGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQAL--DIYDLLVE 452
Query: 243 K 243
K
Sbjct: 453 K 453
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + D +Y LI G+++ +++ + + P + TY +IRGF K G
Sbjct: 239 KHKGLEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRL 298
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A I+E M++ P + L+ GL
Sbjct: 299 KEASEIFEFMMERGVRPNVYTYTGLIDGLC 328
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y Y L+ L R + +A+ + MR+ L PD +Y VIRGF + A+ +
Sbjct: 141 NVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLA 200
Query: 201 EDMIKSPDPPEELPFRILL 219
+M S + + IL+
Sbjct: 201 NEMQGSGCSWSLVTWGILI 219
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTE 182
A++I ++++K+ +PD Y L+ L G ++EA ++ M K+ + PD ++
Sbjct: 371 ALEIVELMKKR-RTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNA 429
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I G K A++IY+ +++ + + ILL L
Sbjct: 430 LIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTL 470
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
D +L L ++ A ++F+ +++ D + PD + +I + G + A +
Sbjct: 531 DYNCLLSSLCKKGTLDQAWRLFEEMQRDDSF-PDVISFNIMIDGSLKAGDIKSAESLLVG 589
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
M L PD TY+++I FLK G +A++ ++ MI S P+
Sbjct: 590 MSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPD 633
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 57.0 bits (136), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F ++ + D + PD + + ++ L R G++ EA Q+ ES++++ + + YT +I
Sbjct: 449 ASRLFRLMIR-DGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALI 507
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ K G A ++++ M+ P + F +++ GL
Sbjct: 508 DGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL 545
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+A Y +LI L GK++EA++ W MR++ FP +TYT ++ + G +A++++
Sbjct: 254 NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M + P + +L+ L
Sbjct: 314 GEMRERGCEPNVYTYTVLIDYL 335
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 46/90 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + + + Y LI + GK+ A +++ M E+ P+S T+ +I G K+G
Sbjct: 492 KEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKV 551
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DAM + EDM K P + IL++ +L
Sbjct: 552 QDAMLLVEDMAKFDVKPTLHTYNILVEEVL 581
Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D P Y L+ AL +G+ EA+ ++ MR+ P+ TYT +I K+G
Sbjct: 282 REDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRM 341
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+A+ + +M++ P +PF L+
Sbjct: 342 DEALKMLNEMVEKGVAPSVVPFNALI 367
Score = 43.9 bits (102), Expect = 0.072, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + LI + + G M +A+ V M + + P+ +TY E+I GF + S AM +
Sbjct: 358 PSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMAL 417
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M++S P+ + + L+ GL
Sbjct: 418 LNKMVESKLSPDVVTYNTLIHGL 440
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +LI R M+ AM + M + L PD TY +I G + G A +
Sbjct: 393 PNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452
Query: 200 YEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAY 246
+ MI+ P++ F + L H +L S +K + +HAY
Sbjct: 453 FRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVK---ANEHAY 503
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD + Q + + Y LI A R G EA + + M E + PD T+T +I
Sbjct: 133 AVNLFDEMVSQG-IKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLI 191
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
K G +A I+E MIK + P + + LL GL H + V+
Sbjct: 192 DHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVR 240
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+++ ++ + D Y LI +GK EAM ++ M+ E+L P TYT ++
Sbjct: 238 AVRLFEVMVERG-IKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILL 296
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ ++G A ++ +M P + +LL GL + + +
Sbjct: 297 KALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAI 344
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIF+++ KQ P+ Y L+ L +M+ A++++E M + + D +Y +I
Sbjct: 203 AYKIFELMIKQGE-APNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLI 261
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
G+ G +AM ++ M P + ILLK L + +R+
Sbjct: 262 NGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRT 307
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P IY LI + + + AM++++ + L P+ TY +I G K+G +A
Sbjct: 355 YKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAE 414
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
++ M +S +E+ F +++G L ++V+K E L
Sbjct: 415 RLFVQMEESGCEQDEISFNFIIRGFLQE----NQVQKAMEFL 452
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + + +Q D +Y LI AL +T + A+++ M E + TY VI
Sbjct: 28 ALELFDKMTRSG-FQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVI 86
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
KDG + ++ +MI P + + L+ GL LR V F+E+ +
Sbjct: 87 DSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNL-FDEMVSQ 143
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L++ GK+ EA +++E M K+ P+ TY ++ G A+ +
Sbjct: 182 PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRL 241
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAY 246
+E M++ + + + L+ G + K +EEL P Y
Sbjct: 242 FEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTY 292
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ AL + G++ A +++ +M+ P TYT ++ G K+G +A+++
Sbjct: 287 PSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDV 346
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ + P + IL+ G+
Sbjct: 347 FRSLKSIKYKPSIRIYSILIGGM 369
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
A ++ +R + P+ Y L+ L R G++ EA +++E M K+ + PD TY +
Sbjct: 292 AFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVL 351
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I GF ++G A N+ E M + P + L+ GL
Sbjct: 352 INGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLC 391
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + P+ + Y L+ L + GK+ +A V M+ L PD+ TYT +I F ++G
Sbjct: 372 KNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQI 431
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ + +M ++ + + F ++L GL
Sbjct: 432 DEAIELLTEMKENDCQADTVTFNVILGGLC 461
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PDA Y LI +R G+++EA+++ M++ D D+ T+ ++ G ++G
Sbjct: 407 KSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRF 466
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+A+++ E + + + +RI+L L + LR K
Sbjct: 467 DEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANK 506
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y L+ L G + A+QV M +E PD QTY VI G K G+ +DA
Sbjct: 360 KPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATV 419
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ D I P+ F L+ G
Sbjct: 420 VMNDAIMKGYLPDVFTFNTLIDG 442
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + + LI + K++ A+Q+ E M + + PD+ TY V+ G K G +
Sbjct: 429 YLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVN 488
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++MI P + + IL++
Sbjct: 489 ETFQEMILKGCHPNPITYNILIENFC 514
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++ D +R + PD Y LI L + EAM M + PD TY +I
Sbjct: 243 AVRLVDGMRA--YAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTII 300
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G+ K +A + +D + P+++ + L+ GL V++ ELF E
Sbjct: 301 DGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCA----EGDVERAL-ELFNEAQ 355
Query: 245 A 245
A
Sbjct: 356 A 356
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y LI R+ KM EA +V M +E L PD+ ++ +I GF ++G A
Sbjct: 500 HPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYL 559
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
+++ + + F L+ G L +K F+E+ + H D
Sbjct: 560 LFQKLEEKGYSATADTFNTLI-GAFSGKLNMHMAEKIFDEMLSKGHRAD 607
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L + GK+NE + ++ M + P+ TY +I F + +A +
Sbjct: 466 PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKV 525
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M + P+ + F L+ G
Sbjct: 526 IVKMSQEGLHPDAVSFNTLIYGFC 549
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 39/86 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y LI L G + A++++ + + + PD Y +++G G A+
Sbjct: 324 FVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHAL 383
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P+ + I++ GL
Sbjct: 384 QVMNEMAEEGCHPDIQTYNIVINGLC 409
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I + + EA ++ + + PD TY +I G +G A+ +
Sbjct: 291 PDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALEL 350
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + P+ + + L+KGL L+
Sbjct: 351 FNEAQAKGIKPDIVVYNSLVKGLCLQGLI 379
>gi|297806463|ref|XP_002871115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316952|gb|EFH47374.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 942
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+I+ K++ +PD + Y I A ++ G MN A Q E M + P+ +TYT +I+G+
Sbjct: 751 DLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEMEALGVKPNIKTYTTLIKGW 810
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P A++ YE+M P++ + LL LL
Sbjct: 811 ARASLPEKALSCYEEMKAVGLKPDKAVYHCLLTSLL 846
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + K+ +PD +Y ++I A G M+ A+Q + M+K P ++T+ +I
Sbjct: 539 AFAVFEDMVKEG-MKPDVILYNNIIAAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPII 597
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K G ++ +++ M + P F L+ GL+
Sbjct: 598 NGFAKSGDMRRSLEVFDMMRRCGCVPTVHTFNALINGLV 636
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P Y LI + GK+++A++V M++E + + +TY+ +I GF+K
Sbjct: 477 KECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDW 536
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+A ++EDM+K P+
Sbjct: 537 ANAFAVFEDMVKEGMKPD 554
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++++Y LI AR G + EA + + M+KE + PD TYT I K G A
Sbjct: 729 NSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTI 788
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
E+M P + L+KG LP L + L P+K Y
Sbjct: 789 EEMEALGVKPNIKTYTTLIKGWARASLPEKALSCYEEMKAVGLKPDKAVY 838
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y L+ L + G ++EAM +++ M+K+ + P+ TY+ ++ G K+G +AM
Sbjct: 223 SPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAME 282
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ E M++ P + + L+ GL L V+
Sbjct: 283 LLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVE 317
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
Query: 47 HEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLK 106
H P+ +R +H G K I ++F IL + K+++ +R
Sbjct: 99 HMPLDAIRVFHKMNDFGCKPTDKSYI---SVFAILVEENQLKVAMSFYKYMREMGVRQSV 155
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
+ + ++ L + TI A F+I R+ + PD+Y Y LI L + GK EA ++
Sbjct: 156 VSLNVLIKALCKNSGTIDAA--FEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKEL 213
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++ M + P TY+ ++ G + G+ +AM +++ M K P + L+ GL
Sbjct: 214 FKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCK 273
Query: 225 H 225
+
Sbjct: 274 N 274
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD ++K+ +P+ + Y L+ L + G EAM++ E M ++ P+ TY+ +I
Sbjct: 245 AMGLFDKMKKKA-IEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLI 303
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL--FPE 242
G K+G A+A+ + R+ L+GL P L K+ F + F E
Sbjct: 304 NGLCKEGKLAEAVETLD--------------RMKLQGLKPDAGLYGKIINGFCNIRKFQE 349
Query: 243 KHAY 246
Y
Sbjct: 350 AATY 353
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
++RK+ ++P+ Y LI L + GK+ EA++ + M+ + L PD+ Y ++I GF
Sbjct: 287 MVRKR--HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNI 344
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+A ++M+ P + + + +K
Sbjct: 345 RKFQEAATYLDEMVLGQISPNRVTWSLHVK 374
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K+G AM I
Sbjct: 207 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEI 266
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y+ M+ P+ + + L+ GL
Sbjct: 267 YKRMLSQSLLPDLITYNTLIYGLC 290
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 157 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSV 214
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 215 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDG 253
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 242 PNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 301
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 302 IDEMSMKGLKPDKFTYTTLIDGCC 325
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G + +A + + M + L PD TYT +I G K+G A
Sbjct: 277 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 336
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+ +++ + L+ GL
Sbjct: 337 RKRMIQENIRLDDVAYAALISGLC 360
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD+ TYT +I F K G
Sbjct: 342 QENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVW 401
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M ++ P + + +L+ G
Sbjct: 402 KGSKLLKEMQRNGHAPSVVTYNVLMNG 428
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
E L KI D +QP+ Y LI L + G ++EA+ + MR+ L P+ Q
Sbjct: 497 SEAVALLHKILD-----SGFQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQ 551
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
YT +I GF K GS AM++ +MI +++ + L+ G + L+
Sbjct: 552 AYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQ 602
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F +R + P+ + Y L+ + G++++A+ + + M + L P+ TYT ++
Sbjct: 324 AMKLFAQMRVRGM-MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K+G A+A N+ M + EL + L+ G
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHG 419
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + + + A + G + EAM+++ MR + P+ TYT ++ G K G
Sbjct: 297 KRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRL 356
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ + ++M+ P + + +++ GL
Sbjct: 357 DDAIVLLDEMVHQGLVPNVVTYTVMVDGLC 386
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ F+ +R+ P+ Y LI + G +N+AM + M + + D YT +I
Sbjct: 534 AISHFNKMRELGL-DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLI 592
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
G++K + DA + MI+S + + + G +++
Sbjct: 593 DGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQ 637
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/88 (21%), Positives = 40/88 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ D Y LI ++ G+M +A + M+++ + + T++ + F K+G
Sbjct: 262 RKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLV 321
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+AM ++ M P E + L+ G
Sbjct: 322 QEAMKLFAQMRVRGMMPNEFTYTSLVDG 349
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+ L R + L ++FD++ P+ + + +I L + G++ EA ++ M+
Sbjct: 175 ILLRLARNRQGGLVRRLFDLLP-----VPNVFTFNIVIDFLCKEGELVEARALFVRMKAM 229
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
PD TY +I G+ K G + + +M KS + + + L+
Sbjct: 230 GCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALIN 278
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY ++ AL + GK +EA+ + + P+ TY +I G K GS ++A++
Sbjct: 477 RPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAIS 536
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M + P + L+ G
Sbjct: 537 HFNKMRELGLDPNVQAYTALIDG 559
>gi|224160730|ref|XP_002338246.1| predicted protein [Populus trichocarpa]
gi|222871516|gb|EEF08647.1| predicted protein [Populus trichocarpa]
Length = 235
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + Y LI ++ M+EA + M +++L PD+ TY+ +++G + G P +A+N+
Sbjct: 8 PVVHSYNILINGYCQSRMMDEAKSLLAEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNL 67
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYDPPEEIFGKL 256
+++M + P + + ILL G H L +K + +E E + +E+F KL
Sbjct: 68 FKEMCSTGLLPNLVTYSILLDGFWKHGHLDEALKLLQSMQEKKLEPDILEVAKELFSKL 126
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 43/84 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +P + Y +I L + +EA +++ M + PDS +Y +I+GFL+ +
Sbjct: 129 DGIRPTVHTYSVMIKGLLKERLSDEAYRLFRKMEDDGFMPDSCSYNVIIQGFLQIRDSST 188
Query: 196 AMNIYEDMIKSPDPPEELPFRILL 219
A+ + ++M+ + F++LL
Sbjct: 189 AVRLIDEMVGKGFSADSTTFQMLL 212
>gi|224075357|ref|XP_002304600.1| predicted protein [Populus trichocarpa]
gi|222842032|gb|EEE79579.1| predicted protein [Populus trichocarpa]
Length = 641
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y+Y LI L + GK EAMQ+++ M ++ ++ Y+ VI G +DG P +A+
Sbjct: 340 YHVNEYVYSALISGLFKEGKSQEAMQLFKEMTVKECELNTIVYSAVIDGLCRDGKPDEAL 399
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+ +M + P + L+KG
Sbjct: 400 EVLSEMTNNRCKPNAYTYSSLMKG 423
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 3/101 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++++ + K ++ Q + Y LI L + GK+ EAM VW M + PD Y +I
Sbjct: 433 AIEMWKDMAKHNFTQNEV-CYSVLIHGLCKDGKVKEAMMVWAQMLGKGCKPDVVAYGSMI 491
Query: 185 RGFLKDGSPADAMNIYEDMI-KSPDP-PEELPFRILLKGLL 223
G G DA+ +Y +M+ + PD P+ + + ILL L
Sbjct: 492 NGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALC 532
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ +Y +I L R GK +EA++V M P++ TY+ +++GF + G+ A+ ++
Sbjct: 378 NTIVYSAVIDGLCRDGKPDEALEVLSEMTNNRCKPNAYTYSSLMKGFFEAGNGHKAIEMW 437
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+DM K E+ + +L+ GL
Sbjct: 438 KDMAKHNFTQNEVCYSVLIHGLC 460
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+AY Y L+ G ++A+++W+ M K + + Y+ +I G KDG +AM
Sbjct: 411 KPNAYTYSSLMKGFFEAGNGHKAIEMWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMM 470
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251
++ M+ P+ + + ++ GL L+ +D +L+ E +P +
Sbjct: 471 VWAQMLGKGCKPDVVAYGSMINGLSNAGLV-----EDALQLYNEMLCQEPDSQ 518
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y L+ L + +++EA+ + + M+ + FP T+ +I G K G A
Sbjct: 201 QPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLARVAK 260
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+ ++M P E+ + L+ GL L+ K++K
Sbjct: 261 LVDNMFLKGCAPNEVTYNTLIHGL----CLKGKLEK 292
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L GK+ +A+ + + M P+ TY +I G +K G D +
Sbjct: 272 PNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDGARV 331
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M + E + L+ GL
Sbjct: 332 LALMEERGYHVNEYVYSALISGL 354
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y +I L+ G + +A+Q++ M ++ D PD TY ++ K S + A
Sbjct: 481 KPDVVAYGSMINGLSNAGLVEDALQLYNEMLCQEPDSQPDVVTYNILLNALCKQSSISRA 540
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+++ M+ P+ + I L+ L
Sbjct: 541 IDLLNSMLDRGCDPDLVTCIIFLRTL 566
>gi|357444861|ref|XP_003592708.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355481756|gb|AES62959.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 1430
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y I + G +++AM M KED P TYT ++ GF K+ P DA+
Sbjct: 633 SPSVVTYNLFIDCWCKNGNVDKAMAHLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAIL 692
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++M K+ PP ++ F L+ GL
Sbjct: 693 LFKEMEKNGCPPNQITFMALIYGLC 717
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD +R++D + PD +Y LI L + + A+ ++ M++ + PD T++I
Sbjct: 284 ALQLFDKMRREDSFTPDVSLYDVLIGGLCKNKDTDRAISLFSEMKEFGVRPDIGILTKLI 343
Query: 185 RGF 187
F
Sbjct: 344 SCF 346
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 14/115 (12%)
Query: 100 HVLRLLKMDIVAVLIEL----------ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
H+ R+ K D V ++ ER ++ IL K + ++ P+ + LI
Sbjct: 658 HLFRMTKEDKVPSVVTYTTLVDGFCKEERPDDAILLFKEME----KNGCPPNQITFMALI 713
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
L + + EA+ M+++++ PDS Y ++ +L D + A I+ +M+
Sbjct: 714 YGLCKCCRPTEALCYLREMQQKEMKPDSFIYVALLSAYLSDLNLTSAFEIFREMV 768
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI +LA+ G++ EA ++ E M K + PD Q Y+ +I G + A ++
Sbjct: 747 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 806
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M+K P E+ +++L +G
Sbjct: 807 FQEMMKRGCAPNEVTYKVLRRGF 829
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/82 (36%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI L TG++ EA V++SM ++ PD+ TY +I+ F K G+ A I
Sbjct: 571 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 630
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M KS P+ + L+ G
Sbjct: 631 LELMAKSGVGPDCFAYNSLMDG 652
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 52/108 (48%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + +T A +F + ++D P Y LI L + G+++EA ++ M + P
Sbjct: 688 LFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIP 747
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ TYT +I K G +A + EDM+K P+ + L+ GL+
Sbjct: 748 ECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLI 795
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y +I LA + +++EA +++E ++ P+ YT VI G LK G D + +
Sbjct: 362 DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 421
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
EDM S P + +++ GL +L K FE++
Sbjct: 422 EDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV-FEQM 459
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y +I ++ G + A ++ E M K + PD Y ++ G++K A +
Sbjct: 606 PDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGV 665
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y+ M+ S P + F +L+ GL
Sbjct: 666 YDRMVASGIKPNAVTFNVLMHGLF 689
Score = 45.4 bits (106), Expect = 0.021, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L + G++ + ++ +E M P TYT VI G K DA +
Sbjct: 396 PNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV 455
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E M++ P+ + + L+ G
Sbjct: 456 FEQMVQKGCVPDTITYTTLIDGF 478
Score = 43.5 bits (101), Expect = 0.085, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 36/71 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L + G+++EA +++E MRK D T+ +I G +A +
Sbjct: 157 PDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACEL 216
Query: 200 YEDMIKSPDPP 210
Y +MI+ P
Sbjct: 217 YREMIERGYEP 227
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 44/85 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P + LI AL + GK++EA ++++++ + + Y ++ G+ K G D +
Sbjct: 225 YEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGL 284
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ M++ + P+ + IL+ G
Sbjct: 285 KLLLQMVECDNFPDIQTYNILVAGF 309
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++Y +I + G ++ ++ E M PD+ Y +I K G +A
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDPPEEI 252
++E M KS + + F L++ L H L EL+ E + Y+P E+
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEAC-----ELYREMIERGYEPYLEV 231
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L + + +A +V+E M ++ PD+ TYT +I GF K +A +
Sbjct: 431 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 490
Query: 200 YEDMI-KSPDP 209
+ M+ K P+P
Sbjct: 491 LDVMLTKGPEP 501
Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+P Y +I LA KM+EA + + SM PD +T +I GF K G P
Sbjct: 52 EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP 106
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P +I+ L+ G+ EA QV M PD YT +I G +A +
Sbjct: 535 EPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARH 594
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+++ MI+ P+ L + +++
Sbjct: 595 VFDSMIEKGCAPDALTYGTIIQ 616
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y L+ + G++++ +++ M + D FPD QTY ++ GF + DA+ +++ +
Sbjct: 267 YNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLS 326
Query: 205 KSPDPPEELPFRILLKGL 222
P + +++GL
Sbjct: 327 SYGCKPNAATYTTIIQGL 344
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 71/131 (54%), Gaps = 6/131 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+E R + + A +IFD + Q PD + LI L++ G +++A++ + M+
Sbjct: 469 LLVECCRNDNMMDAERIFDEMPSQG-VVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNA 527
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
L PD+ YT +I GF ++G ++A+ + ++M++ + + + +L G L + K
Sbjct: 528 GLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNG-----LCKEK 582
Query: 232 VKKDFEELFPE 242
+ + +ELF E
Sbjct: 583 MLSEADELFTE 593
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN- 198
PD Y + LI + G MN+A+ ++E M + +L PD TY +I GF K GS + +N
Sbjct: 601 PDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCK-GSEMEKVNE 659
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ DMI P + + IL+ G
Sbjct: 660 LWNDMISRRIYPNHISYGILING 682
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y ++ L + ++EA +++ M + +FPD T+T +I G+ KDG+ A+ ++
Sbjct: 567 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLF 626
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
E MI+ P+ + + L+ G
Sbjct: 627 EMMIQRNLKPDVVTYNTLIDGF 648
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 39/80 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A R G + EA ++ +SM + L P TY +I G K G A +
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450
Query: 200 YEDMIKSPDPPEELPFRILL 219
++M+K P+ + ILL
Sbjct: 451 LDEMLKIGMSPDTATYNILL 470
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+++ +++ +PD Y LI + +M + ++W M ++P+ +Y +I
Sbjct: 622 AVTLFEMMIQRN-LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILI 680
Query: 185 RGFLKDGSPADAMNIYEDMIK 205
G+ G ++A ++++M++
Sbjct: 681 NGYCNMGCVSEAFRLWDEMVE 701
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 38/73 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +R G+M EA + M + + PD TYT +I G + + +A +
Sbjct: 776 PDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRV 835
Query: 200 YEDMIKSPDPPEE 212
+++M++ P++
Sbjct: 836 HDEMLQRGFVPDD 848
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 21/94 (22%), Positives = 46/94 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L++ R M +A ++++ M + + PD +++ +I K+G A+
Sbjct: 461 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 520
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ DM + P+ + + IL+ G + ++ +K
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALK 554
Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 34/82 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + M+ A + M L PD TY ++ GF + G +A I
Sbjct: 741 PDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELI 800
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
MI+ P+ + L+ G
Sbjct: 801 MLKMIERGVNPDRSTYTSLING 822
Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + Y +I L +TGK A V + M K + PD+ TY ++ ++ + DA
Sbjct: 425 KPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAER 484
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+++M P+ + F L+ GLL
Sbjct: 485 IFDEMPSQGVVPDLVSFSALI-GLL 508
>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
RQ + + A ++FD +R + P +Y LI L K+ EA + +MR+ ++P+
Sbjct: 194 RQGDLLRAQEMFDEMRVKGIV-PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNV 252
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY ++ G+ K + A+ +Y+DM+ P+ + F IL+ GL
Sbjct: 253 YTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLC 298
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ +P+ + LI + + AM ++ M + L PD TYT +I G K GS
Sbjct: 420 ENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMK 479
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249
+A+ +Y DM+ + P LL GL + D ELF EK + P
Sbjct: 480 EALKLYSDMLDNGITPNCYTISCLLDGLCKDGKI-----SDALELFTEKIEFQTP 529
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI L + EA ++E M KE + +S TY +I G K+G A+
Sbjct: 354 SPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALE 413
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I M ++ P + F L+ G
Sbjct: 414 ICSQMTENGVEPNVITFSTLIDG 436
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y LI A + G ++EAM ++ + + ++ PD TY+ +IRG +A NI
Sbjct: 320 PNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E M K + + L+ G
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCC 403
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L + G+M A ++ +M K + P+ Y +I + K G ++AM +
Sbjct: 285 PDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMAL 344
Query: 200 YEDMIKSPDPPEELPFRILLKGLLP 224
+ ++ + P+ + IL++GL
Sbjct: 345 FLELERFEVSPDVFTYSILIRGLCS 369
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y L+ + +A+++++ M E L PD T+ +I G K G A N+
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309
Query: 200 YEDMIKSPDPPE 211
+ +MIK P
Sbjct: 310 FVNMIKFSVTPN 321
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVW-------------ESMRKEDLFPDSQTYTEVIRG 186
P+ Y L+ L + GK+++A++++ ++ + + YT +I G
Sbjct: 495 PNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHG 554
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+DG + A+ ++ DM + P+E+ + ++L+GL
Sbjct: 555 LCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGL 590
>gi|449452174|ref|XP_004143835.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 362
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q +LA++I + ++ +P+ + LI + + AM ++ M + L PD
Sbjct: 122 QHPNLLALEICSQM-TENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVV 180
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
TYT +I G K GS +A+ +Y DM+ + P LL G L + D E
Sbjct: 181 TYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDG-----LCKDGKISDALE 235
Query: 239 LFPEKHAYDPP 249
LF EK + P
Sbjct: 236 LFTEKIEFQTP 246
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 13/96 (13%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVW-------------ESMRKEDLFPDSQTYTEVIRG 186
P+ Y L+ L + GK+++A++++ ++ + + YT +I G
Sbjct: 212 PNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHG 271
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+DG + A+ ++ DM + P+E+ + ++L+GL
Sbjct: 272 LCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGL 307
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L + R EE A+ +F+ ++K PD Y Y LI+ L G + EA +++ +
Sbjct: 1004 IINGLGKFHRLEE---ALVLFNEMKKSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1060
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-----EELPFR 216
++ L P+ T+ +IRG+ G P A +Y+ M+ P E+LP R
Sbjct: 1061 QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1113
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A ++GK++E ++++ M + P++ T+ VI G +K G+ DA+++
Sbjct: 820 PDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAGNVDDALDL 879
Query: 200 YEDMIKSPD-PPEELPFRILLKGL 222
Y D++ D P + L+ GL
Sbjct: 880 YYDLMSDRDFSPTACTYGPLIDGL 903
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI L + +++EA +++ M++ L P TY ++ G K+G +A+
Sbjct: 537 EPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 596
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E M++ PP + F L L
Sbjct: 597 LFEGMVQKGCPPNTITFNTLFDCL 620
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
+D++ +D + P A Y LI L+++G++ EA Q++E M P+ Y +I GF
Sbjct: 881 YDLMSDRD-FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFG 939
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A +++ M+K P+ + +L+ L
Sbjct: 940 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCL 973
Score = 44.7 bits (104), Expect = 0.036, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D + PD + L+ AL + G EA + MR + + P+ TY +I G L+
Sbjct: 357 EKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLLRVHRL 416
Query: 194 ADAMNIYEDM 203
DA+ I+++M
Sbjct: 417 DDALEIFDNM 426
Score = 43.5 bits (101), Expect = 0.084, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L + +E LA+K+ + + D PD + Y +I L + G++ EAM + M+K ++
Sbjct: 620 LCKNDEVTLALKM--LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VY 676
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS-PDPPEELPFRILLKGLL 223
PD T ++ G +K G DA I + + S D P L + L+ +L
Sbjct: 677 PDFVTLCTLLPGVVKAGLIEDAYKIIANFLYSCADQPANLFWEDLMGSIL 726
Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
D++R Q P+ + Y LI L R ++++A++++++M + P + TY I +
Sbjct: 388 LDVMRDQG-ILPNLHTYNTLICGLLRVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYG 446
Query: 189 KDGSPADAMNIYEDM 203
K G A+ +E M
Sbjct: 447 KSGDSVSALETFEKM 461
Score = 40.0 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 36/81 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y + I L R GK+NEA ++ + M E PD TYT +I A
Sbjct: 257 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 316
Query: 199 IYEDMIKSPDPPEELPFRILL 219
++ M P+ + + LL
Sbjct: 317 VFAKMKTGRHKPDRVTYITLL 337
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY LI + G+ + A +++ M KE + PD +TY+ ++ G + ++
Sbjct: 925 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 984
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ ++ +S P+ + + +++ GL
Sbjct: 985 YFRELKESGLNPDVVCYNLIINGL 1008
Score = 37.7 bits (86), Expect = 4.1, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGS 192
K+ PD Y +I L + ++ EA+ ++ M+K + PD TY +I G
Sbjct: 990 KESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLGIAGM 1049
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A IY ++ ++ P F L++G
Sbjct: 1050 VEEAGKIYNEIQRAGLEPNVFTFNALIRG 1078
Score = 37.7 bits (86), Expect = 4.5, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+++ A++ F+ ++ + P+ + +LA+ G+ EA Q++ ++ L PDS TY
Sbjct: 450 DSVSALETFEKMKTKG-IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 508
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++ + K G +A+ + +M+++ P+ + L+ L
Sbjct: 509 NMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSLINTL 550
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++I+++ D PD Y LI AL K++ A +V+ M+ PD TY ++
Sbjct: 280 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDR 339
Query: 187 FLKDGSPADAMN-IYEDMIKSPDPPEELPFRILLKGL-----LPHPLLRSKVKKDFEELF 240
F D D++N + +M K P+ + F IL+ L + V +D + +
Sbjct: 340 F-SDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRD-QGIL 397
Query: 241 PEKHAYD 247
P H Y+
Sbjct: 398 PNLHTYN 404
>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
Length = 583
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E ++ +++ P+ + +I + GK+ +AM V+ M + P
Sbjct: 296 LCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMP 355
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ TY +I G+ K G A+ +Y+ M + PP+ + F L+ G
Sbjct: 356 NTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDG 401
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L +Q + A+ + + + + P A+IY +I L + GK++EA + + M ++
Sbjct: 433 IIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 492
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD TYT +I G+ ++A+ + +M+++ P+ + + LL
Sbjct: 493 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLL 544
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G + A++V++ M + PD T++ +I G+ + G DA+ I
Sbjct: 355 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 414
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ DM + P F I++ L
Sbjct: 415 WSDMAQHRIQPNVYTFSIIIHSLC 438
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G++++A+++W M + + P+ T++ +I K +A+ +
Sbjct: 390 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL 449
Query: 200 YEDMIKSPD 208
++ PD
Sbjct: 450 LNELNLRPD 458
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPADAMNI 199
+AY Y L+ +L G++++ + ++E ++ ++ PD ++ VI+G + G A+ +
Sbjct: 214 EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALEL 273
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E M + P+ + IL+ GL
Sbjct: 274 VERMNEFGCSPDTVTHNILVDGLC 297
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + + ++ Y P+ Y Y L+ L + GK+ +A V M+ L PD+ TYT +I
Sbjct: 418 ARNVIEFMKSNRCY-PNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLI 476
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++G +AM + +++ ++ + + F ++L GL
Sbjct: 477 NFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLC 515
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + +D PD Y LI R GK + A V E M+ +P+ Y+ ++
Sbjct: 382 AFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRCYPNVYNYSALV 441
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G DA + +M S P+ + + L+ L
Sbjct: 442 DGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLC 480
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+ E +AVK+FD + +D + Y LI + +++AM ++E M +++L P++
Sbjct: 328 RNEVDVAVKVFDTMVHKDCV-ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTV 386
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
TY +I G G DA++++ +M+ P+ + +R L
Sbjct: 387 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL 426
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + I +W PD IY ++ + R G++ +A ++ ++ + L P+ TY +I
Sbjct: 439 AMALLKAIEGSNW-DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A+A ++ +M K+ P + + ++ +G L
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 536
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G + A+++ SM + + P+ ++ +I
Sbjct: 159 ALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLI 217
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A NI+ +MI P + + L+ GL
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 256
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPDA + LI L GK+ EA+ +++ M E P+ TY +I G K G+ + A+
Sbjct: 136 HQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAI 195
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P + F L+ L
Sbjct: 196 RLLRSMEQGNCQPNVVVFSTLIDSLC 221
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y +I L + G + EA +++ M K P+ TY + RGFL++ +
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 546
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+ E+M+ + ++ LL G+L L VK+
Sbjct: 547 LLEEML-ARGFSVDVSTTTLLVGMLSDDGLDQSVKQ 581
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L L + +++AM + +++ + PD Q YT ++ G + G DA ++
Sbjct: 418 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 477
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+ ++ P + I++ GL LL ++ K F E+ K+ P + +
Sbjct: 478 FSNLSSKGLQPNVWTYNIMIHGLCKQGLL-AEASKLFSEM--NKNGCSPNDCTY 528
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 128 IFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ + R+ D + PD Y +I +L +++ A + K PD+ T+T +IR
Sbjct: 89 LLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIR 148
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +G +A+++++ MI P + + L+ GL
Sbjct: 149 GLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLC 186
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD +R D + P Y LI L +G + A ++ E M + +FPD TYT ++
Sbjct: 430 ASLLFDDLRAGDIH-PSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLV 488
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+GF+K+G+ + A +Y++M++ P+ + G L
Sbjct: 489 KGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGEL 527
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + + D + PD IY I L + G + +A++ + + L PD TYT VI
Sbjct: 535 AFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 594
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
RG+L++G A N+Y++M++ P + + +L+ G
Sbjct: 595 RGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYG 631
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + GK EA +++ +R D+ P TY +I G + G+ A +
Sbjct: 409 PDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRL 468
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAY 246
E+M P+ + + L+KG + + L S + ++E+ P+ +AY
Sbjct: 469 KEEMTTQLIFPDVITYTTLVKGFVKNGNL-SMATEVYDEMLRKGIKPDGYAY 519
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G ++ A +V++ M ++ + PD YT G L+ G A +
Sbjct: 479 PDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRL 538
Query: 200 YEDMIKSP-DPPEELPFRILLKGLL 223
+E+M+ + P+ + + + GL
Sbjct: 539 HEEMVATDHHAPDLTIYNVRIDGLC 563
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + L+ AL ++G++ EA Q++ESM P+ TYT VI G KDG A+
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M ++ P + + +L++GL
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLC 182
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +++ P+ + Y LI L + GK+++A ++ + MR + P + VI
Sbjct: 17 AVQLF----REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI 72
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+G K G DA+ ++ + + P+ + F IL+ L+ +V++ F ++F H
Sbjct: 73 KGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKS----GRVEEAF-QIFESMH 127
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L++ R EE A +IF+ + P+ Y +I L + GK++ A+++ + M
Sbjct: 106 LVDALVKSGRVEE---AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLM 162
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TY+ ++ G K G + ++M + P+ + + LL GL
Sbjct: 163 NETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A LI+ L + E AV++F+++ + ++P Y ++ L G++ EA+++ E M
Sbjct: 426 AALIDGLSKGGEVDKAVRVFELMVES--FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMI 483
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
++ FPD +Y +IRG + +A +++
Sbjct: 484 HKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD +Y L+ L ++ +++EA+++ + M + +P TY ++ F + A
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ + M + PP+ + + ++ GL
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLC 287
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD-GSPAD--- 195
PD Y +I L R ++++A + + M PD TY+ +I G KD AD
Sbjct: 274 PDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333
Query: 196 --AMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLR----SKVKKDFEEL--- 239
A I E M ++ PP + ++++GL LLR S+V D
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393
Query: 240 ---FPEKHAYDPPEEIFGKL 256
+ H D +IFG +
Sbjct: 394 IGSLCKSHDLDAAYKIFGMM 413
>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
Length = 581
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E ++ +++ P+ + +I + GK+ +AM V+ M + P
Sbjct: 294 LCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMP 353
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ TY +I G+ K G A+ +Y+ M + PP+ + F L+ G
Sbjct: 354 NTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDG 399
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 58/112 (51%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L +Q + A+++ + + + P A+IY +I L + GK++EA + + M ++
Sbjct: 431 IIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 490
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD TYT +I G+ ++A+ + +M+++ P+ + + LL
Sbjct: 491 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLL 542
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G + A++V++ M + PD T++ +I G+ + G DA+ I
Sbjct: 353 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 412
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIFG 254
+ DM + P F I++ L ++ E ++ P+ Y+P ++
Sbjct: 413 WSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFIYNPVIDVLC 472
Query: 255 KL 256
K
Sbjct: 473 KC 474
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPADAMNI 199
+AY Y L+ +L G++++ + ++E ++ L+ PD ++ VI+G + G A+ +
Sbjct: 212 EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALEL 271
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E M + P+ + I++ GL
Sbjct: 272 VERMNEFGCSPDTVTHNIIVDGLC 295
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D + Y +I L G++ +A++V+E M K+ P+S Y +I GF + +DA+
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M + P + + L+ GL
Sbjct: 496 IYSKMADNGCSPTVITYNTLIDGLC 520
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD +R++ PD Y L+ LA+ +++ A+ + + M + + PD Y ++
Sbjct: 177 AVTLFDSLRRRQ-VAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALL 235
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
G K G M +++ ++K P P + ++L GL
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
++++D + K +P+ Y ++ L + G+ E +VWE M +L PD TY +I
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G A +Y ++IK+ + + L+KG
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++++D++ K PD + LI L + G N+A ++E R D +Y+ +I
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMI 446
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G DA+ +YE M K P + L+ G
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFC 485
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+++ + K D +P+++IY LI + + ++A++++ M P TY +I
Sbjct: 458 AVKVYEKMDK-DGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLI 516
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K +A ++ +M+++ P+ + L++GL
Sbjct: 517 DGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLF 555
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI L R+G ++ A +V+ + K L D+ Y +++GF + G +A
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWK 355
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ D + I++KGL ++ + + +L + A P FG L
Sbjct: 356 FW-DSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI--ELWDLLEKDVACIPDTVTFGTL 410
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I+ + + P Y LI L + K EA V M + PD TY +I
Sbjct: 493 AVRIYSKM-ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLI 551
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
RG D DA++I++ ++ + + IL+ GL
Sbjct: 552 RGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLC 590
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ + PD Y LI L K+++A+ +W+ + + L D + +I G G
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVD 596
Query: 195 DAMNIYEDMI-KSPDPPEELPFRILLKGL 222
+A++++ DM K PP + + L+ GL
Sbjct: 597 EALHVFSDMKEKKNCPPNLVTYNTLMDGL 625
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +L G ++ A+ +++S+R+ + PD TY+ ++ G K A+++
Sbjct: 156 PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDL 215
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M +S P+ + + LL G
Sbjct: 216 LDEMPRSGVQPDVVCYNALLGGCF 239
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y +I L +G ++EA+++W+ + K+ PD+ T+ +I G ++G A I+E+
Sbjct: 371 YNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEA 430
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAYD 247
S + + ++ GL L V K D + P H Y+
Sbjct: 431 RVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYN 478
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 51/101 (50%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F ++++ P+ Y L+ L TG +++A +W S+ ++ L PD +Y I
Sbjct: 598 ALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRI 657
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + + + ++++ P + + IL++ ++ +
Sbjct: 658 KGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKY 698
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + L+ AL ++G++ EA Q++ESM P+ TYT VI G KDG A+
Sbjct: 98 PDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIE 157
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M ++ P + + +L++GL
Sbjct: 158 LLDLMNETGCCPNVITYSVLVEGLC 182
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 9/120 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +++ P+ + Y LI L + GK+++A ++ + MR + P + VI
Sbjct: 17 AVQLF----REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVI 72
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
RG K G DA+ ++ + + P+ + F IL+ L+ +V++ F ++F H
Sbjct: 73 RGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKS----GRVEEAF-QIFESMH 127
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L++ R EE A +IF+ + P+ Y +I L + GK++ A+++ + M
Sbjct: 106 LVDALVKSGRVEE---AFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLM 162
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TY+ ++ G K G + ++M + P+ + + LL GL
Sbjct: 163 NETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLC 217
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A LI+ L + E AV++F+++ + ++P Y ++ L G++ EA+++ E M
Sbjct: 426 AALIDGLSKGGEVDKAVRVFELMVES--FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMI 483
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
++ FPD +Y +IRG + +A +++
Sbjct: 484 HKECFPDGASYGALIRGLCRVSCVEEAYELFQ 515
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD +Y L+ L ++ +++EA+++ + M + +P TY ++ F + A
Sbjct: 202 FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAF 261
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ + M + PP+ + + ++ GL
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLC 287
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD-GSPAD--- 195
PD Y +I L R ++++A + + M PD TY+ +I G KD AD
Sbjct: 274 PDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333
Query: 196 --AMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLR----SKVKKDFEEL--- 239
A I E M ++ PP + ++++GL LLR S+V D
Sbjct: 334 EAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMV 393
Query: 240 ---FPEKHAYDPPEEIFGKL 256
+ H D +IFG +
Sbjct: 394 IGSLCKSHDLDAAYKIFGMM 413
>gi|359480144|ref|XP_002269420.2| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Vitis vinifera]
gi|297744374|emb|CBI37344.3| unnamed protein product [Vitis vinifera]
Length = 497
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++R+Q WY+P++ IY LI+ L + + +A ++ +M E + + YT ++
Sbjct: 121 ALKVFELLREQLWYRPNSGIYIKLIVMLGKCKQPEKAHALFLAMIDEGCVVNHEAYTALL 180
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + G A ++ E M +PD P+ + +L+K L
Sbjct: 181 SAYSRSGLFDKAFSLLEKMKNTPDCQPDVHTYSVLIKSCL 220
>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ +I+ K + +PDA+ Y +LI +R GK+ A ++ M + + P+ TYT +I
Sbjct: 466 AMRLLEIM-KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ DA+ ++ M++S + P + +++ G
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IFD + K P+ Y LI + G +N AM++ E M+ L PD+ TYTE+I
Sbjct: 431 AMVIFDKMLKAG-SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF + G A +++ M++ P + + ++ G
Sbjct: 490 SGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
QE ++ IF + D Y P+A+ Y LI+ R ++ A +++ M K+ P+S
Sbjct: 219 QEAKLIMSHIF----RYDAY-PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSV 273
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY+ +I G +G +AM++ E+M++ P + I L L
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSL 317
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D P Y LI L G+ A +++ M P +QTY E+I+ F G
Sbjct: 371 DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQK 430
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
AM I++ M+K+ P + + L+ G
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYG 456
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P Y Y +++L G +EA+++ M+K P+ QT+T +I G +DG
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ +Y M+ P + + L+ L
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQL 387
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF- 174
L R T LA KIF + K++++ P+ Y Y LI L + G+ +A +++ + + +
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYF-PNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYG 654
Query: 175 --PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
P+ TYT +++G +G +A + M K P E +R LL G
Sbjct: 655 CEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703
Score = 43.9 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA--M 197
P+ Y I L R G+ A +++ M K + FP+ TY+ +I G ++G DA
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
N+ + P + L+KGL
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGL 669
Score = 43.5 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R LA +FD + K D P++ Y LI L G++ EAM + E M ++ + P
Sbjct: 249 RNHNLDLAFAMFDRMVK-DGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTV 307
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT + G ++A+ + M K P F L+ GL
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + Y +I ++T ++EA M K+ L P+ TYT I G ++G A I
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M K P + L+ GL
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGL 632
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + +I L + G++ EA + + + D +P++ TYT +I G ++ + A
Sbjct: 199 RPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH-------PLLRSKVKKDFEELFPEKHAYDPP 249
+++ M+K P + + L+ GL +L V+K E P + Y P
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE---PTVYTYTIP 313
Score = 40.4 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y ++I G + +AM +++ M K P+ TY +I G+ K G+ +AM +
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M + P+ + L+ G
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGF 492
>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g02060, chloroplastic-like [Cucumis sativus]
Length = 720
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y L+ L R GK+ A V + M K+ DL P+ TYT +IRG+ A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++E+M+ + + L+KGL
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGLC 338
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
++K+F I+ K P + L+ L + G+ N A +V++ M + PD+ T+ +
Sbjct: 168 SIKVFTIM-KSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNIL 226
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
IRGF +G D I+ D+ + P+ + + L+ GL
Sbjct: 227 IRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLC 266
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
YK LI+ + G ++ M ++D PD +TY +I G L P A+ E M+
Sbjct: 477 YKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKML 536
Query: 205 KSPDPPEELPFRILLKGLL 223
+S P F +L LL
Sbjct: 537 RSSHRPNSSTFHSILAKLL 555
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + L+ G +++A++V+E M + + PDS TY+ ++R + G A
Sbjct: 359 FSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAE 418
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS---------------KVKKDFEELFPE 242
++ + +++ +ILL G PL+ + K +K F +L
Sbjct: 419 DLLDKLLER---------KILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLM-R 468
Query: 243 KHAYDPPE 250
+ DPP
Sbjct: 469 RGTQDPPS 476
>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 830
Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ +I+ K + +PDA+ Y +LI +R GK+ A ++ M + + P+ TYT +I
Sbjct: 466 AMRLLEIM-KGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ DA+ ++ M++S + P + +++ G
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGF 562
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IFD + K P+ Y LI + G +N AM++ E M+ L PD+ TYTE+I
Sbjct: 431 AMVIFDKMLKAG-SSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELI 489
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF + G A +++ M++ P + + ++ G
Sbjct: 490 SGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAIIDG 526
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 5/104 (4%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
QE ++ IF + D Y P+A+ Y LI+ R ++ A +++ M K+ P+S
Sbjct: 219 QEAKLIMSHIF----RYDAY-PNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSV 273
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY+ +I G +G +AM++ E+M++ P + I L L
Sbjct: 274 TYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSL 317
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D P Y LI L G+ A +++ M P +QTY E+I+ F G
Sbjct: 371 DGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQK 430
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
AM I++ M+K+ P + + L+ G
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNTLIYG 456
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P Y Y +++L G +EA+++ M+K P+ QT+T +I G +DG
Sbjct: 300 QKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFE 359
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ +Y M+ P + + L+ L
Sbjct: 360 IAIGLYHKMLADGLVPTTVTYNALINQL 387
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF- 174
L R T LA KIF + K++++ P+ Y Y LI L + G+ +A +++ + + +
Sbjct: 597 LCRNGRTGLAFKIFHEMEKRNYF-PNLYTYSSLIYGLCQEGRAEDA-EMYNLLARLTHYG 654
Query: 175 --PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
P+ TYT +++G +G +A + M K P E +R LL G
Sbjct: 655 CEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQPSEEIYRALLIG 703
Score = 43.9 bits (102), Expect = 0.066, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA--M 197
P+ Y I L R G+ A +++ M K + FP+ TY+ +I G ++G DA
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
N+ + P + L+KGL
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGL 669
Score = 43.5 bits (101), Expect = 0.075, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R LA +FD + K D P++ Y LI L G++ EAM + E M ++ + P
Sbjct: 249 RNHNLDLAFAMFDRMVK-DGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTV 307
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT + G ++A+ + M K P F L+ GL
Sbjct: 308 YTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL 352
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + Y +I ++T ++EA M K+ L P+ TYT I G ++G A I
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M K P + L+ GL
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGL 632
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 10/118 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + +I L + G++ EA + + + D +P++ TYT +I G ++ + A
Sbjct: 199 RPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILGHCRNHNLDLAFA 258
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH-------PLLRSKVKKDFEELFPEKHAYDPP 249
+++ M+K P + + L+ GL +L V+K E P + Y P
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIE---PTVYTYTIP 313
Score = 40.4 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y ++I G + +AM +++ M K P+ TY +I G+ K G+ +AM +
Sbjct: 410 PSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRL 469
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M + P+ + L+ G
Sbjct: 470 LEIMKGNGLKPDAWTYTELISGF 492
>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Cucumis sativus]
Length = 757
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y L+ L R GK+ A V + M K+ DL P+ TYT +IRG+ A
Sbjct: 252 EPDVVTYNTLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKA 311
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++E+M+ + + L+KGL
Sbjct: 312 LAVFEEMVNQGLKANNITYNTLIKGLC 338
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
++K+F I+ K P + L+ L + G+ N A +V++ M + PD+ T+ +
Sbjct: 168 SIKVFTIM-KSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEMLSTYGVTPDTFTFNIL 226
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
IRGF +G D I+ D+ + P+ + + L+ GL
Sbjct: 227 IRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLC 266
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
YK LI+ + G ++ M ++D PD +TY +I G L P A+ E M+
Sbjct: 477 YKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKML 536
Query: 205 KSPDPPEELPFRILLKGLL 223
+S P F +L LL
Sbjct: 537 RSSHRPNSSTFHSILAKLL 555
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 25/128 (19%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + L+ G +++A++V+E M + + PDS TY+ ++R + G A
Sbjct: 359 FSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAE 418
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS---------------KVKKDFEELFPE 242
++ + +++ +ILL G PL+ + K +K F +L
Sbjct: 419 DLLDKLLER---------KILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLM-R 468
Query: 243 KHAYDPPE 250
+ DPP
Sbjct: 469 RGTQDPPS 476
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ E A+++F +++Q +P+ Y LI L GK++EA+ + + M DL P+
Sbjct: 240 KDENVSGAMRVFGEMQRQGL-RPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNV 298
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
T+ +I GF K+ + +A+N++ DM K P + + L+
Sbjct: 299 VTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + D + D +P+ + LI + +NEA+ ++ M K+ + P++ TYT +I
Sbjct: 282 AVALRDQMVSSDL-EPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLI 340
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ KDG DA +Y MI PE + L+ GL
Sbjct: 341 DAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLC 379
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ + KQ P+A Y LI A + G+M +A ++ M +FP+ TY +I
Sbjct: 317 AINLFNDMEKQ-GVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLI 375
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
G + G A ++ +M+ + + + IL+ L R VK +E+F
Sbjct: 376 AGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKL-LDEMF 430
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI---IALARTGKMNEAMQVWESMRKE 171
+L R + I +K++ + P+ Y LI + R GKM +A + + M +
Sbjct: 170 KLNRAGDVIEDMKVWGV-------SPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAK 222
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
+ P+ TY +I GF KD + + AM ++ +M + P + + IL+ GL
Sbjct: 223 GICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCS 275
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + ++ AM+V+ M+++ L P+ TY +I G DG +A+ +
Sbjct: 226 PNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVAL 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M+ S P + +L+ G + + + F ++ EK DP + L
Sbjct: 286 RDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINL-FNDM--EKQGVDPNAMTYTTL 339
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS-----PADAMNIYED 202
++ L + GK+N A V E M+ + P+ TY +I G+ K G ADA I ++
Sbjct: 161 VVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADA--ILKE 218
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M+ P E+ + IL+ G
Sbjct: 219 MVAKGICPNEVTYNILIDGFC 239
>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
Length = 586
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E ++ +++ P+ + +I + GK+ +AM V+ M + P
Sbjct: 299 LCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMP 358
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ TY +I G+ K G A+ +Y+ M + PP+ + F L+ G
Sbjct: 359 NTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDG 404
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L +Q + A+ + + + + P A+IY +I L + GK++EA + + M ++
Sbjct: 436 IIHSLCKQNRSDEAICLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 495
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD TYT +I G+ ++A+ + +M+++ P+ + + LL
Sbjct: 496 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLL 547
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G + A++V++ M + PD T++ +I G+ + G DA+ I
Sbjct: 358 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 417
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ DM + P F I++ L
Sbjct: 418 WSDMAQHRIQPNVYTFSIIIHSLC 441
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G++++A+++W M + + P+ T++ +I K +A+ +
Sbjct: 393 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICL 452
Query: 200 YEDMIKSPD 208
++ PD
Sbjct: 453 LNELNLRPD 461
>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740
gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana]
gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana]
gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 51 LGLRQYHDGRPRGSLWRGKKLIGKEALFVIL--GLKRFKDDEEKLQKFIKTHVLRLLKMD 108
L L Y D + G L+ + F+IL GL + EE L+ ++ L K D
Sbjct: 246 LALAVYEDFKEDG-------LVEESTTFMILVKGLCKAGRIEEMLE-ILQRMRENLCKPD 297
Query: 109 I---VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
+ A++ L + +++++D +R+ D +PD Y L++ L + G++ +++
Sbjct: 298 VFAYTAMIKTLVSEGNLDASLRVWDEMRR-DEIKPDVMAYGTLVVGLCKDGRVERGYELF 356
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP- 224
M+ + + D + Y +I GF+ DG A N++ED++ S + + ++KGL
Sbjct: 357 MEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSV 416
Query: 225 ----------HPLLRSKVKKDFEELFPEKHAY 246
+ +++ DFE L P AY
Sbjct: 417 NQVDKAYKLFQVAIEEELEPDFETLSPIMVAY 448
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+E+ +A+ +F I++ + +Y L+ AL + G + +++ ++ MRK PDS
Sbjct: 486 EEKNAMALDVFYILKTKG--HGSVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSS 543
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ I F++ G A + +E +I+ P + L KGL
Sbjct: 544 SYSIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAAYLSLTKGLC 588
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 53/100 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ ++P ++Y ++ AL + G + A+ V+E +++ L +S T+ +++G K G
Sbjct: 220 KKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVEESTTFMILVKGLCKAGRI 279
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ + I + M ++ P+ + ++K L+ L + ++
Sbjct: 280 EEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLR 319
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+ E +AVK+FD + +D + Y LI + +++AM ++E M +++L P++
Sbjct: 328 RNEVDVAVKVFDTMVHKDCV-ANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTV 386
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
TY +I G G DA++++ +M+ P+ + +R L
Sbjct: 387 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL 426
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + I +W PD IY ++ + R G++ +A ++ ++ + L P+ TY +I
Sbjct: 439 AMALLKAIEGSNW-DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 497
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A+A ++ +M K+ P + + ++ +G L
Sbjct: 498 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 536
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G + A+++ SM + + P+ ++ +I
Sbjct: 159 ALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLI 217
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A NI+ +MI P + + L+ GL
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLC 256
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPDA + LI L GK+ EA+ +++ M E P+ TY +I G K G+ + A+
Sbjct: 136 HQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAI 195
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P + F L+ L
Sbjct: 196 RLLRSMEQGNCQPNVVVFSTLIDSLC 221
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y +I L + G + EA +++ M K P+ TY + RGFL++ +
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 546
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+ E+M+ + ++ LL G+L L VK+
Sbjct: 547 LLEEML-ARGFSVDVSTTTLLVGMLSDDGLDQSVKQ 581
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L L + +++AM + +++ + PD Q YT ++ G + G DA ++
Sbjct: 418 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 477
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFG 254
+ ++ P + I++ GL LL ++ K F E+ K+ P + +
Sbjct: 478 FSNLSSKGLQPNVWTYNIMIHGLCKQGLL-AEASKLFSEM--NKNGCSPNDCTYN 529
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 128 IFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ + R+ D + PD Y +I +L +++ A + K PD+ T+T +IR
Sbjct: 89 LLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIR 148
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +G +A+++++ MI P + + L+ GL
Sbjct: 149 GLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLC 186
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + P+ Y Y L+ L + GK+ +A V ++ L PD+ TYT +I ++G
Sbjct: 332 KSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKS 391
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+A+ + E+M ++ + + F +LL GL + D E P++ Y
Sbjct: 392 DEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFEEAL--DMVEKLPQQGVY 442
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 51/99 (51%), Gaps = 13/99 (13%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL-FPDSQTYTEVIRGFL 188
D+ RK P+ ++ L+ + G ++ A ++ E MR + +P+ TY+ ++ G
Sbjct: 226 DLTRK-----PNVCVFNILVKYHCKNGDLDSAFEIVEEMRNSEFSYPNLVTYSTLMDGLC 280
Query: 189 KDGSPADAMNIYEDMIKS----PDPPEELPFRILLKGLL 223
++G +A +++E+M+ PDP L + +L+ G
Sbjct: 281 RNGRVKEAFDLFEEMVSRDHIVPDP---LTYNVLINGFC 316
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ + +D PD Y LI R GK + A V + M+ +P+ Y+ ++
Sbjct: 288 AFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALV 347
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G DA + ++ S P+ + + L+ L
Sbjct: 348 DGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTSLINFLC 386
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++R+ QP+ Y L+ A+ R +AM V + MR + P+ TY +I G +
Sbjct: 168 DMLRR--GCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCR 225
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+G DA + + P+ + + LLKGL SK D EELF E
Sbjct: 226 EGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCA-----SKRWDDVEELFAE 273
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDAY Y LI L G++ +A+ + + M + P+ TYT ++ ++ AM +
Sbjct: 141 PDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAV 200
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P + + +++ G+
Sbjct: 201 LDEMRAKGCTPNIVTYNVIINGMC 224
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 6/114 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI R G + A+QV E M + ++ VI K G DA +
Sbjct: 281 PNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKL 340
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD-PPEEI 252
DM P+ + + +LKG L R++ D +EL E + PP E+
Sbjct: 341 LNDMGSYGCNPDTISYTTVLKG-----LCRAERWDDAKELLNEMVRNNCPPNEV 389
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I ++ + G++++A ++ M PD+ +YT V++G + DA + +M+++
Sbjct: 324 VINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNN 383
Query: 208 DPPEELPFRILL-----KGLLPHPLL 228
PP E+ F + KGL+ ++
Sbjct: 384 CPPNEVTFNTFICILCQKGLIEQAIM 409
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 47/91 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + +I L++ ++ EA+Q++ ++ + P + Y +++ G K +A++
Sbjct: 557 SPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAID 616
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ M+ + P E + IL++GL LL+
Sbjct: 617 FFAYMVSNGCMPNESTYIILIEGLAHEGLLK 647
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + D +R + P+ Y +I + R G++++A ++ + PD+ +YT ++
Sbjct: 197 AMAVLDEMRAKGC-TPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLL 255
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+G D ++ +M++ P E+ F +L++
Sbjct: 256 KGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIR 291
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ + G + EA+++ E M + P+ TY ++ G KD S DA+ +
Sbjct: 488 PNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALEL 547
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ P+ + F ++
Sbjct: 548 LHGLVSKGVSPDVITFSSII 567
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D + Y +I L G++ +A++V+E M K+ P+S Y +I GF + +DA+
Sbjct: 436 QLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVR 495
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY M + P + + L+ GL
Sbjct: 496 IYSKMADNGCSPTVITYNTLIDGLC 520
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
++++D + K +P+ Y ++ L + G+ E +VWE M +L PD TY +I
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G A +Y ++IK+ + + L+KG
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD +R++ PD Y L+ LA+ +++ A+ + + M + + PD Y ++
Sbjct: 177 AVTLFDSLRRRQ-VAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALL 235
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
G K G M +++ ++K P P + ++L GL
Sbjct: 236 GGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLC 275
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++++D++ K PD + LI L + G N+A ++E R D +Y+ +I
Sbjct: 387 AIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMI 446
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G DA+ +YE M K P + L+ G
Sbjct: 447 NGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFC 485
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+++ + K D +P+++IY LI + + ++A++++ M P TY +I
Sbjct: 458 AVKVYEKMDK-DGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLI 516
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K +A ++ +M+++ P+ + L++GL
Sbjct: 517 DGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLF 555
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI L R+G ++ A +V+ + K L D+ Y +++GF + G +A
Sbjct: 296 QPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWK 355
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ D + I++KGL ++ + + +L + A P FG L
Sbjct: 356 FW-DSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI--ELWDLLEKDVACIPDTVTFGTL 410
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I+ + + P Y LI L + K EA V M + PD TY +I
Sbjct: 493 AVRIYSKM-ADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLI 551
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
RG D DA++I++ ++ + + IL+ GL
Sbjct: 552 RGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLC 590
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ + PD Y LI L K+++A+ +W+ + + L D + +I G G
Sbjct: 537 ENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKVD 596
Query: 195 DAMNIYEDMI-KSPDPPEELPFRILLKGL 222
+A++++ DM K PP + + L+ GL
Sbjct: 597 EALHVFSDMKEKKNCPPNLVTYNTLMDGL 625
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y +I L +G ++EA+++W+ + K+ PD+ T+ +I G ++G A I+E+
Sbjct: 371 YNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEA 430
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAYD 247
S + + ++ GL L V K D + P H Y+
Sbjct: 431 RVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYN 478
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +L G ++ A+ +++S+R+ + PD TY+ ++ G K A+++
Sbjct: 156 PNLQTYNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDL 215
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M +S P+ + + LL G
Sbjct: 216 LDEMPRSRVQPDVVCYNALLGGCF 239
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 51/101 (50%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F ++++ P+ Y L+ L TG +++A +W S+ ++ L PD +Y I
Sbjct: 598 ALHVFSDMKEKKNCPPNLVTYNTLMDGLYETGYIDKAATLWTSITEDGLEPDIISYNTRI 657
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + + + ++++ P + + IL++ ++ +
Sbjct: 658 KGLCSCDRIHEGIQLLDEVLSRGIIPTVITWNILVRAVIKY 698
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD K P Y LI + G++ EA ++W+ M + P++ TY +I
Sbjct: 383 ARKLFDEFDKGSI--PSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLI 440
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL------------LPHPLLRSKV 232
G K+G+ + + + E+M++S P + F IL +GL + ++ KV
Sbjct: 441 EGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNGKV 500
Query: 233 KKDFEELFPEK 243
K+ ELF K
Sbjct: 501 DKESWELFLNK 511
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ G M A +V E M +PD+ TYT ++ G+ K G ++A +
Sbjct: 222 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATV 281
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+DM K+ P E+ + ++++ L
Sbjct: 282 MDDMEKNEIEPNEVTYGVMIRALC 305
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+ + +I AL K++EA +W M K + PD+ + +I K+G ++A
Sbjct: 325 FMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEAR 384
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++++ K P L + L+ G+
Sbjct: 385 KLFDEFDKG-SIPSLLTYNTLIAGMC 409
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + D + K + +P+ Y +I AL + K EA +++ M PDS +VI
Sbjct: 278 AATVMDDMEKNE-IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVI 336
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+D +A ++ M+K+ P+ L+ L + S+ +K F+E
Sbjct: 337 DALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRV-SEARKLFDEF 390
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VLI+ +R + L +F ++ P+ + L+ AL + + A +V + +
Sbjct: 159 LLNVLIQNQRFD---LVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI 215
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P+ TYT ++ G++ G A + E+M+ P+ + + +L+ G
Sbjct: 216 PAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDG 268
>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 485
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D + D Y L+ L +G+ ++A ++ M D+ P+ T+T +I F+++G
Sbjct: 201 ERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKF 260
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A YE+MI+ P+ + ++ GL H
Sbjct: 261 LEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMH 292
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 3/108 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY +I +TG +N A+ ++ M ++ + D+ TY ++ G G +DA +
Sbjct: 173 DVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLM 232
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
DM+ P + F L+ + + KK +EE+ + DP
Sbjct: 233 RDMVMRDIVPNVITFTALINAFVREGKFL-EAKKFYEEMI--RRCIDP 277
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I L G+++EA Q+ + M + FPD TY +I GF K + +
Sbjct: 277 PDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKL 336
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + + + F +++G
Sbjct: 337 VREMSQRGLVVDTVTFNTIIQG 358
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +I D++ + + PD Y LI +T +++E ++ M + L D+ T+ +I
Sbjct: 298 AKQILDLMVTKGCF-PDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTII 356
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G+ + G P A I+ M P+ + ILL GL
Sbjct: 357 QGYFQAGRPDAAQEIFSRMGSRPNIR---TYSILLYGLC 392
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ L ++ +A+ ++ESM+K ++ D TY VI G G+ DA +
Sbjct: 378 RPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWD 437
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ + P+ + + ++ G
Sbjct: 438 LFCSLSFKGLEPDVVTYTTMISGFC 462
>gi|297610360|ref|NP_001064440.2| Os10g0363500 [Oryza sativa Japonica Group]
gi|110288965|gb|AAP53322.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679339|dbj|BAF26354.2| Os10g0363500 [Oryza sativa Japonica Group]
Length = 512
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ PD Y +I L + G+M +A QV MR + + P++ TY +I G++ G
Sbjct: 278 EQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALGDN 337
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
A A ++E+M+K+ + + + L+ GL ++ KV+ EL ++ +P F
Sbjct: 338 AMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMK-KVEHLLREL--DRAKLEPNASTF 394
Query: 254 GKL 256
L
Sbjct: 395 SAL 397
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K+ ++R+ D +P+A + LI+ + A+Q+ M+K P+ TY VI
Sbjct: 374 KVEHLLRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVI 433
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K+ A+++ DM+ P++ GL
Sbjct: 434 SSFCKNKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGL 471
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 145 YKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ LI A R G A+Q+ M +E L PD TY +I G K+G A + +M
Sbjct: 253 FNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEM 312
Query: 204 IKSPDPPEELPFRILLKG 221
P + + L+ G
Sbjct: 313 RVKGVMPNTVTYNTLIHG 330
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVKIF+ + + QPD Y LI L + G ++EA ++ M+++ L PD TY+ +I
Sbjct: 484 AVKIFEELENSNC-QPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLI 542
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K A +++++MI P + + ILL L
Sbjct: 543 ECFGKTDKVEMACSLFDEMIAEGCSPNLVTYNILLDCL 580
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 12 PILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLR----QYHDGRPRGSLWR 67
P+ AS++L++L KNP+ F F F P F+ + L L Q + L
Sbjct: 91 PLEASLILKSL-KNPTLAFKFFHFCPSLKNDPFIYNRLFLTLSRSSSQLRFEQTESLLDD 149
Query: 68 GKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVK 127
+K K ++ + L F D ++ +K LR +L R + A
Sbjct: 150 MEKRGVKGSISTVNILIGFFGDLDRCVGLVKKWGLRFNAYSYKCLLQGYLRLRDCDKAFG 209
Query: 128 IF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++ D++R Y D + + L+ ALA+ K+++A +V+E M++ PD+ TYT +IR
Sbjct: 210 VYLDMLRC--GYSLDIFAFNMLLDALAKDQKVDKAYKVFEDMKRRHCEPDTFTYTIMIRM 267
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G +++ +++ M++ + + +++ L
Sbjct: 268 TGKAGKTDESLALFQAMLEKGFTLNLIAYNTMIEAL 303
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQD PD + Y LI + R G+++ A++++E + + PD +Y +I K+G
Sbjct: 457 KQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDV 516
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A +++M + P+ + + L++
Sbjct: 517 DEAHMRFKEMQEKGLNPDVVTYSTLIE 543
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y + AL R +++ ++E M+++ PD TY +I + + G A+ I+
Sbjct: 429 DTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIF 488
Query: 201 EDMIKSPDPPEELPFRILLKGL-----LPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGK 255
E++ S P+ + + L+ L + +R K ++ + L P+ Y E FGK
Sbjct: 489 EELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKEMQE-KGLNPDVVTYSTLIECFGK 547
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 56.6 bits (135), Expect = 9e-06, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D Y PD + L+ AL + G++NEA + ++MRK+ + P+ TY +I G L+ D
Sbjct: 363 DGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDD 422
Query: 196 AMNIYEDMIKSPDPPEELPFRILLK--GLLPHPLLRSKVKKDFEEL 239
A++++ +M P + +L+ G HP K + FE++
Sbjct: 423 ALDLFSNMESLGVEPTAYTYILLIDYHGKSGHP---GKALETFEKM 465
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI A ++GK+NE +++ M P++ TY VI +K AM++
Sbjct: 823 PDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDL 882
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
Y +++ P F L+ G LL+S D E+F
Sbjct: 883 YYNLVSGDFSPTPCTFGPLIDG-----LLKSGRLDDAHEMF 918
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R + T A+ +F ++ + PD Y Y LI+ L G + EA +++E ++ L P
Sbjct: 1010 LGRSQRTEEALSLFHEMQNRG-IVPDLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKP 1068
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ TY +IRG+ G+ A IY+ M+
Sbjct: 1069 NVFTYNALIRGYTLSGNSELAYGIYKKMM 1097
Score = 45.8 bits (107), Expect = 0.018, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y I L R GK++EA ++ + M + PD TYT +I DAM
Sbjct: 261 RPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMC 320
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
++ M S P+++ + LL L KV+K + E+ + +A D
Sbjct: 321 LFTKMKSSSHKPDKVTYVTLLDKFSDCGHL-DKVEKIWTEMEADGYAPD 368
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI L + G++ EA Q++ M + +L P TY ++ G K+G A+
Sbjct: 541 EPDVIVINSLIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQ 600
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E M P + F LL L
Sbjct: 601 LFESMNGHGCSPNTITFNTLLDCL 624
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K ++PD Y L+ + G +++ ++W M + PD T+T ++ K G
Sbjct: 326 KSSSHKPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRI 385
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A ++ + M K P + L+ GLL
Sbjct: 386 NEAFDLLDTMRKQGVLPNLHTYNTLISGLL 415
Score = 42.4 bits (98), Expect = 0.20, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 47/84 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P++ IY L+ + G ++ A + ++ M KE + PD ++YT ++ G DA++
Sbjct: 927 RPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALH 986
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E + ++ P+ + + +++ GL
Sbjct: 987 YFEKLKQAGLDPDLVAYNLMINGL 1010
Score = 40.4 bits (93), Expect = 0.67, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ PD Y +I L R+ + EA+ ++ M+ + PD TY +I G
Sbjct: 992 KQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMI 1051
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A IYE++ P + L++G
Sbjct: 1052 EEAGKIYEELQFIGLKPNVFTYNALIRG 1079
Score = 40.4 bits (93), Expect = 0.77, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 53/115 (46%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ ++ L + ++T +A +F K+ +P +Y LI + A ++E M
Sbjct: 757 LIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEM 816
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD+ TY +I K G + ++Y++M+ P + + +++ L+
Sbjct: 817 KSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNLV 871
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 37/83 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI AL K+++AM ++ M+ PD TY ++ F G I
Sbjct: 297 PDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKVEKI 356
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M P+ + F IL+ L
Sbjct: 357 WTEMEADGYAPDVVTFTILVNAL 379
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + K N+A W+ M+K+ L P++ TYT +I G K G+ A A ++
Sbjct: 618 PNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSGNVAQASSL 677
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E S P+ + +++GL
Sbjct: 678 FERFRASGGIPDSASYNAMIEGL 700
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI L + G++++A +++E M D P+ YT +IR F K D
Sbjct: 337 SPDGATFCSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHK 396
Query: 199 IYEDMIKSPDPPE 211
+Y++M++S P+
Sbjct: 397 MYKEMMRSGCSPD 409
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VL + R +E AV+IF+ + +Q+ P AY Y +I+ GK +EA + E
Sbjct: 172 MMGVLCKANRLDE---AVEIFEQM-EQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQ 227
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
R + P Y ++ K G A+ I+E+M + P LP ++ G+L
Sbjct: 228 RAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMP--NLPTYNIIIGMLC 281
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+ D +++ + P+ +I L + K++EA ++E M + PD T+ +I
Sbjct: 289 AFKVRDAMKEAGLF-PNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLI 347
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G K G DA IYE M+ + P + + L++ + K+D +++ E
Sbjct: 348 DGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRN-----FFKCDRKEDGHKMYKE 400
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD Y LI +L + G E +++ +M+ + D++ Y VI GF K G
Sbjct: 437 KARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKV 496
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A + E+M P + + ++ GL
Sbjct: 497 NKAYQLLEEMKTMGHHPTVVTYGSVVDGL 525
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L L ++ +T A++IF+ +++ P+ Y +I L + G + A +V ++M++
Sbjct: 241 CILTCLGKKGKTDKALRIFEEMKRDA--MPNLPTYNIIIGMLCKAGNVEAAFKVRDAMKE 298
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
LFP+ +T +I K +A +I+E M P+ F L+ GL
Sbjct: 299 AGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGL 350
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + + D +Y I + GK++ A + + M+ L PD TYT ++ K
Sbjct: 123 KSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRL 182
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A+ I+E M ++ P + ++ G
Sbjct: 183 DEAVEIFEQMEQNRQVPCAYAYNTMIMG 210
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y ++ LA+ +++EA ++E + + + Y+ +I GF K G +A
Sbjct: 511 HHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAY 570
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ E+M++ P + LL GL+
Sbjct: 571 LVMEEMMQKGLTPNVYTWNCLLDGLV 596
>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 627
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y++ L+ A A+ K+ EAM V+ MR++ L P++ TY VI K G
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DAM +E MI P+ + + L+ L
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + +++AM+V +M K + PD TY ++ GF G P +A+
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 173 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRC-TEARKIFDSM--TKRGLKPDITTYGTL 227
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 178 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 237
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P F IL+
Sbjct: 238 VEMHGLLDLMVRNGIHPNHYVFSILV 263
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY ++ K+G +A I
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 208
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K P+ + LL+G
Sbjct: 209 FDSMTKRGLKPDITTYGTLLQG 230
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V + E+ EE +L +F +R+Q P+A Y +I L ++G++ +AM +E M
Sbjct: 262 LVCAYAKQEKVEEAML---VFSKMRQQGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317
Query: 169 RKEDLFPDSQTYTEVIRGFL 188
E L PDS Y +I
Sbjct: 318 IDEGLRPDSIVYNSLIHSLC 337
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +IF ++ +D PD Y LI + ++ E M+++ M + L ++ TY +I
Sbjct: 380 AQQIFTLMVSKDCL-PDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 438
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + G A I++ M+ PP+ + + ILL GL +
Sbjct: 439 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 479
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ K + +PD + Y LI L G+ ++A ++ M + + P+ T+ +I
Sbjct: 276 FDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDA 335
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
F K+G +A ++++MI+ P + + L+ G H
Sbjct: 336 FAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMH 374
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 118 RQEETILAVKIFD--IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
++ + I A K+FD I R D P+ Y LI +++EA Q++ M +D P
Sbjct: 338 KEGKLIEAEKLFDEMIQRSID---PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 394
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D TY +I+GF K + M ++ +M + + + L++GL
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLF 442
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A A+ GK+ EA ++++ M + + P+ TY +I GF +A
Sbjct: 323 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 382
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
I+ M+ P+ + + L+KG ++K ++ ELF E
Sbjct: 383 IFTLMVSKDCLPDVVTYNTLIKG-----FCKAKRVEEGMELFRE 421
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A KIF + D PD Y L+ L + GK+ +A+ V+E ++K + P+ TY +
Sbjct: 449 MAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIM 507
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
I G K G D +++ + P + + ++ G R +K++ + LF E
Sbjct: 508 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG-----FCRKGLKEEADALFRE 561
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY +I R G EA ++ M+++ PDS Y +IR L+DG A +
Sbjct: 533 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAE 592
Query: 199 IYEDM 203
+ ++M
Sbjct: 593 LIKEM 597
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K +P+ Y Y +I + + GK+ + ++ S+ + + P+ YT +I
Sbjct: 485 ALVVFEYLQKSKM-EPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 543
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P+ + L++ L
Sbjct: 544 SGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 582
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ + IY +I L + M++A ++ M + + PD TY +I G +DA
Sbjct: 253 EANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASR 312
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ DMI+ P + F L+
Sbjct: 313 LLSDMIERKINPNVVTFNSLI 333
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 113 LIELERQEETILAVKIFDII-----RKQDWYQP-DAYIYKDLIIALARTGKMNEAMQVWE 166
+IE + I + FD++ + Q+ P + Y Y L+ R ++ A+ V
Sbjct: 81 IIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLG 140
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M K PD T + ++ G+ ++A+ + + M++ P+ + F L+ GL H
Sbjct: 141 KMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLH 199
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L + G + A ++++ M + + PD TY+ ++ G K G A+ ++
Sbjct: 430 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 489
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E + KS P + I+++G+
Sbjct: 490 EYLQKSKMEPNIYTYNIMIEGMC 512
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI GKM+E++++ M L PD+ TY+ ++ G+ K+G DA+
Sbjct: 432 KPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALA 491
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y +M P + + I+L GL
Sbjct: 492 LYREMFSKDVKPNAITYNIILHGL 515
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI + G+ EA +++SM + PD+ TY ++ G+ G+ D +
Sbjct: 222 QPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHD 281
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ MI+ P E+ F IL++
Sbjct: 282 LLALMIQDGIPLEDHVFNILIR 303
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
QD + +++ LI A A+ +++AM + MR++ P+ TYT VI K G
Sbjct: 288 QDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVE 347
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
DA++ + M+ P+ + F L+ GL
Sbjct: 348 DAVSHFSQMVSEGLSPDIITFTSLIHGLCT 377
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
G++ EA+++ + M L PD TY+ +I + K G +A NI++ M++ P+ +
Sbjct: 204 GQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTY 263
Query: 216 RILLKG 221
R LL G
Sbjct: 264 RTLLHG 269
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ +LI + ET+ I +Q + P+ Y +I L + G++ +A+ + M
Sbjct: 297 VFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQM 356
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
E L PD T+T +I G I E+L F ++ +G+ P+ +
Sbjct: 357 VSEGLSPDIITFTSLIHGLCT--------------IGEWKKVEKLSFEMINRGIHPNAIF 402
Query: 229 RSKV 232
+ +
Sbjct: 403 LNTI 406
>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 401
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y++ L+ A A+ K+ EAM V+ MR++ L P++ TY VI K G
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DAM +E MI P+ + + L+ L
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + +++AM+V +M K + PD TY ++ GF G P +A+
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 173 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRC-TEARKIFDSM--TKRGLKPDITTYGTL 227
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 178 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 237
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P F IL+
Sbjct: 238 VEMHGLLDLMVRNGIHPNHYVFSILV 263
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY ++ K+G +A I
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 208
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K P+ + LL+G
Sbjct: 209 FDSMTKRGLKPDITTYGTLLQG 230
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V + E+ EE +L +F +R+Q P+A Y +I L ++G++ +AM +E M
Sbjct: 262 LVCAYAKQEKVEEAML---VFSKMRQQGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317
Query: 169 RKEDLFPDSQTYTEVIRGFL 188
E L PDS Y +I
Sbjct: 318 IDEGLRPDSIVYNSLIHSLC 337
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 7/110 (6%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q PD + LI + GKM+ A M+ L PD YT VI GF + GS
Sbjct: 289 QQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSM 348
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL-PHPLLRSKVKKDFEELFPE 242
++A+ + ++M+ P+ + + LL GL H LL D EEL E
Sbjct: 349 SEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLL------DAEELLNE 392
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + Q +PD Y LI + R G + +A ++W+ M ++FP+ TY+ +I
Sbjct: 421 ALQLFDTLLHQRL-RPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILI 479
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G +A ++M+ + P + + ++KG
Sbjct: 480 DSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKG 516
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIVA--VLIELERQEETIL-AVKIFDIIRKQDWYQPDAY 143
K ++ LQK ++ ++L D++ LI +EE + A +F+I+ K+ QPDA
Sbjct: 524 KKGQQFLQKMMQDNILP----DLITFNTLIHGYIKEENMHGAFNVFNIMEKE-MVQPDAV 578
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y +I + G M EA +V++ M + PD TY +I G + G+ +A ++++M
Sbjct: 579 TYNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEM 638
Query: 204 IKSPDPPEE 212
+ P++
Sbjct: 639 MHRGFAPDD 647
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I R G M+EA++V + M PD TY ++ G K DA +
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEEL 389
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + P+ F L+ G
Sbjct: 390 LNEMKERGVTPDLCTFTTLIHG 411
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I R+G + + Q + M ++++ PD T+ +I G++K+ + A N+
Sbjct: 505 PNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNV 564
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M K P+ + + +++ G
Sbjct: 565 FNIMEKEMVQPDAVTYNMIINGF 587
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
QD PD + LI + M+ A V+ M KE + PD+ TY +I GF + G+
Sbjct: 535 QDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNME 594
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+A +++ M S P+ + L+ G
Sbjct: 595 EAGRVFKKMGASGIEPDRYTYMSLING 621
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + ++ +A ++ M++ + PD T+T +I G+ +DG+ A+ +
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQL 424
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ ++ P+ + + L+ G+
Sbjct: 425 FDTLLHQRLRPDVVAYNSLIDGMC 448
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PD + LI R G +A+Q+++++ + L PD Y +I G + G
Sbjct: 394 KERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDL 453
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
A A +++DM P + + IL+
Sbjct: 454 AKANELWDDMHAREIFPNHVTYSILI 479
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAV--LIE-LERQEETILAVKIFDIIRKQ 135
+I G R + E+ LQ F T + + L+ D+VA LI+ + R+ + A +++D + +
Sbjct: 408 LIHGYCRDGNFEKALQLF-DTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAR 466
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + P+ Y LI + G++ EA + M + P+ TY +I+G+ + G+
Sbjct: 467 EIF-PNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKK 525
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ M++ P+ + F L+ G +
Sbjct: 526 GQQFLQKMMQDNILPDLITFNTLIHGYI 553
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 58/115 (50%), Gaps = 4/115 (3%)
Query: 108 DIVA--VLIELE-RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
D+V VLI+ R + A+ + D + + +P + ++ L + + ++A +V
Sbjct: 191 DVVTHNVLIDARFRAGDVDAAIALVDSMANKGL-KPGIVTFNSVLKGLCKHRRFDKAKEV 249
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ +M + + PD +++ +I GF + G +AM Y++M + P+ + F L+
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLI 304
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A R G ++ A+ + +SM + L P T+ V++G K A +
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEV 249
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ F IL+ G
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFC 273
>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Glycine max]
Length = 648
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ FD++ + QPDA +Y LI R KM+ + + MR+ PD +TY +I
Sbjct: 430 AIEYFDVMVDRGC-QPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALI 488
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE---ELFP 241
+ P DA+ IY+ MI+S P + +++K V K++E E++
Sbjct: 489 KLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYF--------VTKNYEMGHEIWD 540
Query: 242 EKH 244
E H
Sbjct: 541 EMH 543
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 104 LLKMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
LL M+ ++ I+ ++ AV IFD+++K ++ + L+ +L+ EA
Sbjct: 269 LLTMETFSIAIKAFAEAKQRKKAVGIFDLMKKYG-FKVGVDVINFLLDSLSTAKLGKEAQ 327
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
V+E + K+ P QTYT ++ G+ + + +A ++ +MI P+ + ++L+G
Sbjct: 328 AVFEKL-KDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEG- 385
Query: 223 LPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
LL+ K K D +LF A P +
Sbjct: 386 ----LLKCKKKSDAIKLFEIMKAKGPSPNV 411
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D + P Y L+ R + EA +VW M PD + ++ G LK +
Sbjct: 334 KDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKS 393
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
DA+ ++E M P + I+++ L+
Sbjct: 394 DAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLM 427
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 108 DIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
D+VA + LE + ++ A+K+F+I+ K P+ Y +I + M EA++
Sbjct: 375 DVVAHNVMLEGLLKCKKKSDAIKLFEIM-KAKGPSPNVRSYTIMIQDFCKQKLMGEAIEY 433
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
++ M PD+ YT +I GF + ++ ++M + PP+ + L+K
Sbjct: 434 FDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIK 489
>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
Length = 822
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++ K QP+A + LI A + G+M++AM ++ SM + P+ TY+ +I
Sbjct: 644 AIKLFEVL-KCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G+ K + A +YE M+ P + + IL+ GL L+
Sbjct: 703 DGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLM 746
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 103 RLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159
R +KMD+V +++ R + A++++ + K+ P+ Y LI L R G++
Sbjct: 339 RGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEG-ISPNVVTYSILINGLCRNGRVL 397
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
EA V+ + K+ L P TY+ +I GF K + D +Y M++ P+ + +L+
Sbjct: 398 EACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLI 457
Query: 220 KGL 222
GL
Sbjct: 458 NGL 460
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D I+ ++ A R G + +A++V+ M KE + P+ TY+ +I G ++G +A ++
Sbjct: 344 DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVF 403
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++K P L + L+ G LR
Sbjct: 404 GQILKQGLEPSVLTYSSLIDGFCKSENLR 432
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ LA G+++EA+ ++ + K+ PD Y +I GF K PA + I
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ M + P+ + +L+
Sbjct: 578 FKLMQSNGIFPDICIYNVLI 597
Score = 44.7 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D P+ Y LI L + G M EA ++ L PD Y +IRG+ K G A+
Sbjct: 724 DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAE 783
Query: 196 AMNIYEDMIKSPDPPEEL 213
AM +Y+ M+ + P++L
Sbjct: 784 AMMLYDHMLVNGIMPDDL 801
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIE-LERQEETILAVKIFDIIRKQ 135
+I G R K + L+ +I + +++ D+V VL++ L Q A+ +F + K+
Sbjct: 491 LIDGCFRLKRTRDGLKMYILMGMYKVIP-DVVTYTVLVKGLAEQGRLDEALALFFQLLKK 549
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ PD IY LI + +Q+++ M+ +FPD Y +I F ++G +
Sbjct: 550 G-FSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVEN 608
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + ++IK P+ + + ++ G + SK K FE L
Sbjct: 609 VLELLREIIKYGLEPDIVTYNTMICGYCSLKIF-SKAIKLFEVL 651
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I ++A++++E ++ P++ T+T +I + KDG DAM
Sbjct: 622 EPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAML 681
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I+ M++ P L + L+ G
Sbjct: 682 IFSSMLERGPEPNILTYSCLIDG 704
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI L R GK+ E ++ + D ++ ++ +++ G A+ +
Sbjct: 308 PDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEV 367
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y M+K P + + IL+ GL
Sbjct: 368 YTRMLKEGISPNVVTYSILINGL 390
>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g31840-like [Vitis vinifera]
Length = 1131
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++ K QP+A + LI A + G+M++AM ++ SM + P+ TY+ +I
Sbjct: 644 AIKLFEVL-KCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLI 702
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G+ K + A +YE M+ P + + IL+ GL L+
Sbjct: 703 DGYFKTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLM 746
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 103 RLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159
R +KMD+V +++ R + A++++ + K+ P+ Y LI L R G++
Sbjct: 339 RGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEG-ISPNVVTYSILINGLCRNGRVL 397
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
EA V+ + K+ L P TY+ +I GF K + D +Y M++ P+ + +L+
Sbjct: 398 EACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLI 457
Query: 220 KGL 222
GL
Sbjct: 458 NGL 460
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D I+ ++ A R G + +A++V+ M KE + P+ TY+ +I G ++G +A ++
Sbjct: 344 DVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVF 403
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++K P L + L+ G LR
Sbjct: 404 GQILKQGLEPSVLTYSSLIDGFCKSENLR 432
Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D P+ Y LI L + G M EA ++ L PD Y +IRG+ K G A+
Sbjct: 724 DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAE 783
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
AM +Y+ M+ + P++L L K L + S+ + +FPE
Sbjct: 784 AMMLYDHMLVNGIMPDDL----LQKALAEYGFQDSQASI-YSTVFPE 825
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ LA G+++EA+ ++ + K+ PD Y +I GF K PA + I
Sbjct: 518 PDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQI 577
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ M + P+ + +L+
Sbjct: 578 FKLMQSNGIFPDICIYNVLI 597
Score = 42.7 bits (99), Expect = 0.17, Method: Composition-based stats.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 6/164 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIE-LERQEETILAVKIFDIIRKQ 135
+I G R K + L+ +I + +++ D+V VL++ L Q A+ +F + K+
Sbjct: 491 LIDGCFRLKRTRDGLKMYILMGMYKVIP-DVVTYTVLVKGLAEQGRLDEALALFFQLLKK 549
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ PD IY LI + +Q+++ M+ +FPD Y +I F ++G +
Sbjct: 550 G-FSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVEN 608
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + ++IK P+ + + ++ G + SK K FE L
Sbjct: 609 VLELLREIIKYGLEPDIVTYNTMICGYCSLKIF-SKAIKLFEVL 651
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I ++A++++E ++ P++ T+T +I + KDG DAM
Sbjct: 622 EPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAML 681
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I+ M++ P L + L+ G
Sbjct: 682 IFSSMLERGPEPNILTYSCLIDG 704
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI L R GK+ E ++ + D ++ ++ +++ G A+ +
Sbjct: 308 PDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEV 367
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y M+K P + + IL+ GL
Sbjct: 368 YTRMLKEGISPNVVTYSILINGL 390
>gi|449460864|ref|XP_004148164.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FDI++ + Y P +++K L L ++G + EA + M L+PD YT +I
Sbjct: 205 ALELFDIMQSTNGYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYPDKTMYTSLI 264
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ +D AM M+K P+ L+ G +
Sbjct: 265 HGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFV 303
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 1/139 (0%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
+R +D L +K + L + ++ E RQ A I +R Q +P
Sbjct: 515 ERLFEDAMSLIDHMKDYSLFPNTTTYLIIVNEYCRQGNVTAAYHILRKMR-QVGLKPSVA 573
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
IY +I L+R ++ EA V++ M + + PD + Y +I+G+ K+G +A ++E M
Sbjct: 574 IYDSIIRCLSREKRICEAEVVFKMMLEAGMDPDKKFYLTMIKGYSKNGRILEACELFEQM 633
Query: 204 IKSPDPPEELPFRILLKGL 222
+++ PP + L++GL
Sbjct: 634 VENSIPPSSHIYTALIRGL 652
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 135 QDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+DW QPD + +I + GK++ A+ + SM +L P YT + ++G
Sbjct: 319 EDWGIQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRL 378
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+ + + M+ + P+ + F L+K
Sbjct: 379 EEVDGLLKGMLDNGIIPDHVLFLTLMK 405
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI R KM AMQ M K PD+ T +I GF+K G +
Sbjct: 255 PDKTMYTSLIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLV 314
Query: 200 YEDMIKSPDPPEELPFRILL-----KGLLPHPL--LRSKVKKDFEELFPEKHAY 246
Y+ M P+ + F I++ +G + L L S V + L P H Y
Sbjct: 315 YKLMEDWGIQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSN---LSPSVHCY 365
>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
Length = 526
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y++ L+ A A+ K+ EAM V+ MR++ L P++ TY VI K G
Sbjct: 249 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 308
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DAM +E MI P+ + + L+ L
Sbjct: 309 DAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 178 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 237
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P F IL+
Sbjct: 238 VEMHGLLDLMVRNGIHPNHYVFSILV 263
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + +++AM+V +M K + PD TY ++ GF G P +A+
Sbjct: 113 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 172
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 173 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRC-TEARKIFDSM--TKRGLKPDITTYGTL 227
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +G+ EA+ + MR + + PD TY ++ K+G +A I
Sbjct: 149 PDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKI 208
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M K P+ + LL+G
Sbjct: 209 FDSMTKRGLKPDITTYGTLLQG 230
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V + E+ EE +L +F +R+Q P+A Y +I L ++G++ +AM +E M
Sbjct: 262 LVCAYAKQEKVEEAML---VFSKMRQQGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 317
Query: 169 RKEDLFPDSQTYTEVIRGFL 188
E L PDS Y +I
Sbjct: 318 IDEGLRPDSIVYNSLIHSLC 337
>gi|449499684|ref|XP_004160885.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g62370-like [Cucumis sativus]
Length = 693
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FDI++ + Y P +++K L L ++G + EA + M L+PD YT +I
Sbjct: 205 ALELFDIMQSTNGYPPTLHLFKTLFYGLCKSGWLVEAELLIREMEFRSLYPDKTMYTSLI 264
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ +D AM M+K P+ L+ G +
Sbjct: 265 HGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFV 303
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 50/89 (56%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q +P IY +I L+R ++ EA V++ M + + PD + Y +I+G+ K+G
Sbjct: 564 RQVGLKPSVAIYDSIIRCLSREKRICEAEVVFKMMLEAGMDPDKKFYLTMIKGYSKNGRI 623
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A ++E M+++ PP + L++GL
Sbjct: 624 LEACELFEQMVENSIPPSSHIYTALIRGL 652
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 135 QDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+DW QPD + +I + GK++ A+ + SM +L P YT + ++G
Sbjct: 319 EDWGIQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSNLSPSVHCYTVLSSALYRNGRL 378
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+ + + M+ + P+ + F L+K
Sbjct: 379 EEVDGLLKGMLDNGIIPDHVLFLTLMK 405
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI R KM AMQ M K PD+ T +I GF+K G +
Sbjct: 255 PDKTMYTSLIHGYCRDRKMKMAMQALFRMVKIGCKPDTFTLNSLIHGFVKLGLVEKGWLV 314
Query: 200 YEDMIKSPDPPEELPFRILL-----KGLLPHPL--LRSKVKKDFEELFPEKHAY 246
Y+ M P+ + F I++ +G + L L S V + L P H Y
Sbjct: 315 YKLMEDWGIQPDVVTFHIMIGKYCQEGKVDSALMILNSMVSSN---LSPSVHCY 365
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +L +GK+ EAM+V + + + +PD TYT +I D AM +
Sbjct: 207 PDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKL 266
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M K P+ + + +L+ G+ L +K
Sbjct: 267 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 300
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 95 KFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
++++ V R DIV +L L + + AV+I + + + P Y +I
Sbjct: 405 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGC-SPVLITYNTVIDG 463
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L + GK A ++ E MR++ L PD TY+ ++RG +G +A+ I+ DM P
Sbjct: 464 LTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPS 523
Query: 212 ELPFRILLKGLL 223
+ + ++ GL
Sbjct: 524 AVTYNAIMLGLC 535
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ +I+ + Y PD Y L+ AL + GK + A+++ + + P TY VI
Sbjct: 403 AIEYLEIMVSRGCY-PDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVI 461
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G A + E+M + P+ + + LL+GL
Sbjct: 462 DGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGL 499
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R +T A +I +I+ PD Y LI ++G++++A+QV E M + PD
Sbjct: 154 RSGKTRKATRIMEILENSGAV-PDVITYNVLIGGYCKSGEIDKALQVLERM---SVAPDV 209
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY ++R G +AM + + ++ P+ + + IL++
Sbjct: 210 VTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIE 252
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D +++ Y PD Y LI A + +AM++ + MRK+ PD TY +I
Sbjct: 228 AMEVLDRQMQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 286
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G +A+ +M P + I+L+ +
Sbjct: 287 NGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMC 325
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A ++ + +R++ +PD Y L+ L GK++EA++++ M
Sbjct: 459 TVIDGLTKVGKTEYAAELLEEMRRKGL-KPDIITYSTLLRGLGCEGKVDEAIKIFHDMEG 517
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P + TY ++ G K + A++ M++ P + + IL++G+
Sbjct: 518 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R+GK +A ++ E + PD TY +I G+ K G A+ +
Sbjct: 140 PDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQV 199
Query: 200 YEDMIKSPD 208
E M +PD
Sbjct: 200 LERMSVAPD 208
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L R G++ E ++ E M + PD T +IRGF + G A I E + S P+
Sbjct: 117 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPD 176
Query: 212 ELPFRILLKG 221
+ + +L+ G
Sbjct: 177 VITYNVLIGG 186
Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ D++ K + P++ Y L+ + KM+ A++ E M +PD TY ++
Sbjct: 367 RAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLL 426
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG A+ I + P + + ++ GL
Sbjct: 427 TALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGL 464
>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
Length = 374
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ L+ RQ +T A +FD + Q PD Y +I AL++ M++A V M
Sbjct: 208 VINGLLREGRQLDT--AYHLFDQMLDQGL-SPDVVTYNSIISALSKARAMDKAAVVLVRM 264
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
K P+ T+ ++ G+ G P DA+ +++ M + P+ + L+ G L
Sbjct: 265 VKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLM-GYLCKNGR 323
Query: 229 RSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ +K F+ + K + P +G L
Sbjct: 324 SMEARKIFDSMV--KRGHKPNSATYGTL 349
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ + L+ +GK N+A+ V++ M ++ + PD TY ++ K+G
Sbjct: 266 KNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSM 325
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+A I++ M+K P + LL G
Sbjct: 326 EARKIFDSMVKRGHKPNSATYGTLLHG 352
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 41/72 (56%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D +PD + Y L+ L + G+ EA ++++SM K P+S TY ++ G+ +GS
Sbjct: 301 RDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLV 360
Query: 195 DAMNIYEDMIKS 206
++ + M+++
Sbjct: 361 KMHHLLDMMVRN 372
>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
virgata]
Length = 418
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A +++ M + L P+ T+T +I G K+ AM
Sbjct: 203 QPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 LAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 318 IDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLC 357
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +F+ I K W +P + L+ R G ++E ++ +M + PD TY+
Sbjct: 154 VAQLVFNAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 211
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA ++++M+ P + F L+ G
Sbjct: 212 LINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAG 250
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + +++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDGCC 322
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI LA GK++ AM++ E M K +FPD TY +++ + A A ++
Sbjct: 513 PDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDA-AWDL 571
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M+++ P E F+ + KG
Sbjct: 572 LQEMMRNGHTPNEFTFKAVEKGF 594
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 27/177 (15%)
Query: 99 THVLRLLKMDIVAV-------------LIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
THVLRL MD AV ++ R EE A++++ I K D P Y
Sbjct: 393 THVLRL--MDKAAVKPNRYIYTMIMDGFVKSSRLEE---ALELYQRILK-DGILPSTVTY 446
Query: 146 KDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+I AL + KM+EA+++ M RKE+L P TY+ +I G K G A ++ +M
Sbjct: 447 NTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEM 506
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKHAYDPPEEIFGK 255
I + P+ + L++ L + S+ + EE+ FP+ H Y +I +
Sbjct: 507 IDNGVIPDCFTYTSLIQTLAGAGKV-SRAMELLEEMLKAGIFPDDHTYGTLVQILCR 562
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y I AL G+ EA +V+E+M ++ PD TY +I F K+GS A A ++
Sbjct: 336 PDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHV 395
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M K+ P + +++ G +
Sbjct: 396 LRLMDKAAVKPNRYIYTMIMDGFV 419
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ L + R+EE A K+F+ + ++ +PD + Y +I + G M A V M
Sbjct: 345 IEALYSIGRREE---AEKVFETMVEKGC-KPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 400
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K + P+ YT ++ GF+K +A+ +Y+ ++K P + + ++ L
Sbjct: 401 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALC 454
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 84 KRFKDDEEKLQKFIKTHVL--RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPD 141
R ++ E Q+ +K +L + ++ L +L++ +E + ++ ++ R+++ +P
Sbjct: 422 SRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLR--EMQRRKEELEPS 479
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
Y +I L + G A + M + PD TYT +I+ G + AM + E
Sbjct: 480 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 539
Query: 202 DMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDPPEEIF 253
+M+K+ P++ + G L L RS V + +L E ++ + P E F
Sbjct: 540 EMLKAGIFPDDHTY-----GTLVQILCRSDVDAAW-DLLQEMMRNGHTPNEFTF 587
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV F+ + +P + Y L+ L + K+ A V+E M ++ PD Y+ +I
Sbjct: 182 AVSYFNSVSPNKC-EPTLFTYTVLVDGLCKAHKVERACDVFEEMIRKGYKPDIIAYSSLI 240
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
G K G +A + + M+ PP + + ++ GL ++ VK
Sbjct: 241 DGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRIQEAVK 289
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y ++ L + G++ EA++ + MR+ L P TY+ ++ G++ G A +
Sbjct: 266 PTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEKAFAV 325
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAY 246
E+M P+ + + + ++ L R + +K FE + P+ H Y
Sbjct: 326 MEEMADRDCAPDTISYTMFIEALYSIG-RREEAEKVFETMVEKGCKPDMHTY 376
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 91 EKLQKFIKTHVLRLLK--MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
E+ +K +T V + K M ++I+ +E ++ A + + +P+ YIY +
Sbjct: 355 EEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMI 414
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
+ ++ ++ EA+++++ + K+ + P + TY VI K +A+ + +M + +
Sbjct: 415 MDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKE 474
Query: 209 --PPEELPFRILLKGL 222
P + + +++ GL
Sbjct: 475 ELEPSIVTYSMIIHGL 490
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IVA L + R +E + ++ ++ R++ + D Y + ++ GK+ +A V E M
Sbjct: 274 IVAGLCKCGRIQEAVKTIQ--EMRRRRLRPRVDTYSF--IVTGYIGMGKVEKAFAVMEEM 329
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
D PD+ +YT I G +A ++E M++ P+ + I++
Sbjct: 330 ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 380
>gi|255548041|ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 262
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 10/149 (6%)
Query: 116 LERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L R+ + AV + D++ K + PD Y L+ +L R K+ EA ++ M+ +
Sbjct: 39 LCRRSQVNGAVGLLEDMLNKG--FVPDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCN 96
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL------- 227
PD Y +I GF ++G DA + DM + P + +R L+ G+ +
Sbjct: 97 PDIVHYNTIISGFCREGRAMDARKVLGDMECNGCLPNLVSYRTLVAGICDQGMFDEAKSY 156
Query: 228 LRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
L + K F F HA I GK+
Sbjct: 157 LEEMILKGFSPHFSVSHALVKGFCIVGKI 185
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
AL TG+++ A +++ M K D+ PD ++Y +++G + A+ + EDM+ P
Sbjct: 3 ALCLTGELSVAYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDMLNKGFVP 62
Query: 211 EELPFRILLKGLLPHPLLRSKVK 233
+ L + LL L LR K
Sbjct: 63 DCLTYTTLLNSLCRKKKLREAYK 85
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF+++RKQ WY+P Y L++ L + + EA ++E M+ E L P YT ++
Sbjct: 111 ALKIFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEARLLFEVMQTEGLRPTIDVYTALV 170
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLK 220
+ + G A A + ++M D P+ + +L+
Sbjct: 171 SAYGESGLLAKAFSTVDEMKSVSDCKPDVYTYSVLIN 207
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ +L +GK+ EAM+V + + + +PD TYT +I D AM +
Sbjct: 206 PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKL 265
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M K P+ + + +L+ G+ L +K
Sbjct: 266 LDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIK 299
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T AV++ + +R++ +PD Y L+ L R GK++EA++++ M
Sbjct: 458 TVIDGLTKVGKTEYAVELLEEMRRKGL-KPDIITYSTLLRGLGREGKVDEAIKIFHDMEG 516
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P + TY ++ G K + A++ M++ P E + IL++G+
Sbjct: 517 LSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 95 KFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
++++ V R DIV +L L + + AV+I + + + P Y +I
Sbjct: 404 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGC-SPVLITYNTVIDG 462
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L + GK A+++ E MR++ L PD TY+ ++RG ++G +A+ I+ DM P
Sbjct: 463 LTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPS 522
Query: 212 ELPFRILLKGLL 223
+ + ++ GL
Sbjct: 523 AVTYNAIMLGLC 534
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ +I+ + Y PD Y L+ AL + GK++ A+++ + + P TY VI
Sbjct: 402 AIEYLEIMVSRGCY-PDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVI 460
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G A+ + E+M + P+ + + LL+GL
Sbjct: 461 DGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGL 498
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D +++ Y PD Y LI A + +AM++ + MRK+ PD TY +I
Sbjct: 227 AMEVLDRQLQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 285
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G +A+ +M P + I+L+ +
Sbjct: 286 NGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMC 324
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R +T A +I +I+ PD Y LI ++G++++A++V E M + PD
Sbjct: 153 RSGKTKKATRIMEILENSGAV-PDVITYNVLIGGYCKSGEIDKALEVLERM---SVAPDV 208
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY ++R G +AM + + ++ P+ + + IL++
Sbjct: 209 VTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEA 252
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R+GK +A ++ E + PD TY +I G+ K G A+ +
Sbjct: 139 PDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEV 198
Query: 200 YEDMIKSPD 208
E M +PD
Sbjct: 199 LERMSVAPD 207
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L R G++ E ++ E M + PD T +IRGF + G A I E + S P+
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175
Query: 212 ELPFRILLKG 221
+ + +L+ G
Sbjct: 176 VITYNVLIGG 185
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 36/83 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ Y L+ + KM+ A++ E M +PD TY ++ KDG A+ I
Sbjct: 381 PNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEI 440
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ P + + ++ GL
Sbjct: 441 LNQLSSKGCSPVLITYNTVIDGL 463
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA Y LI L + +++EA V +SM +E + P ++YT ++ G+ K G +A
Sbjct: 146 APDAATYNCLIWMLCDSQRLDEAWGVLDSMLEEGICPTVRSYTAILHGYCKQGRVLEAER 205
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + MI+ P+ + + +L++GL
Sbjct: 206 LVDTMIQVGCAPDVISYSVLIQGLC 230
>gi|255578090|ref|XP_002529915.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530592|gb|EEF32469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 636
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F+++R+Q WY+P + +Y LI+ L + + +A +++++M E ++YT ++
Sbjct: 138 ALKVFELLREQIWYRPYSGMYIKLIVMLGKCKQPEKAHELFQAMIHEGCDVSHESYTALL 197
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + G A ++ E+M ++PD P+ + IL+K +
Sbjct: 198 SAYGRSGLLDKAFSLLEEMKRNPDCQPDVHTYSILIKSCV 237
>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
Length = 600
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 48/83 (57%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI +LA+ G++ EA ++ E M K + PD Q Y+ +I G + A ++
Sbjct: 492 PECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDV 551
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M+K P E+ +++L +G
Sbjct: 552 FQEMMKRGCAPNEVTYKVLRRGF 574
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI L TG++ EA V++SM ++ PD+ TY +I+ F K G+ A I
Sbjct: 316 PDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEI 375
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E M KS P+ + L+ G +
Sbjct: 376 LELMAKSGVGPDCFAYNSLMDGYV 399
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y +I LA + +++EA +++E ++ P+ YT VI G LK G D + +
Sbjct: 107 DVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNF 166
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
E+M S P + +++ GL +L K FE++
Sbjct: 167 EEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKV-FEQM 204
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD + ++ PDA Y +I ++ G + A ++ E M K + PD Y ++
Sbjct: 337 ARHVFDSMIEKGC-APDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLM 395
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G++K A +Y+ M+ S P + F +L+ GL
Sbjct: 396 DGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLF 434
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ ++ P+ Y +I L + G++ + ++ +E M P TYT VI
Sbjct: 127 ACELFEELKTAGC-SPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVI 185
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K DA ++E M++ P+ + + L+ G
Sbjct: 186 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGF 223
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F + +++ P Y LI L + G+++EA ++ M + P+ TYT +I
Sbjct: 442 AFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLI 501
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
K G +A + EDM+K P+ + L+ GL+ ++
Sbjct: 502 YSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMV 545
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+P Y +I LA KM+EA + + SM PD +T +I GF K G P
Sbjct: 4 EPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQP 58
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ +P +I+ L+ G+ EA QV M PD YT +I G
Sbjct: 275 RERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRV 334
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A ++++ MI+ P+ L + +++
Sbjct: 335 PEARHVFDSMIEKGCAPDALTYGTIIQ 361
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L + + +A +V+E M ++ PD+ TYT +I GF K +A +
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 235
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P + + ++ G
Sbjct: 236 LDVMLTKGPEPTAVTYGSIVHGFC 259
>gi|296087908|emb|CBI35191.3| unnamed protein product [Vitis vinifera]
Length = 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + +M++AM ++E M ++ L P++ TY +I G G DA+ +
Sbjct: 8 PNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL 67
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +M+ P+ + +RILL L + L
Sbjct: 68 FREMVACGQIPDLVTYRILLDYLCKNCHL 96
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L+ L + +++AM + +++ +L PD Q YT VI G + G DA ++
Sbjct: 78 PDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDL 137
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++ P + I+ GL LL K
Sbjct: 138 FSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATK 171
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y + L + G ++EA +++ M + D TY + +GFL++ + A+
Sbjct: 147 KPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQ 206
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+ E+M+ + ++ LL G+L L VK+
Sbjct: 207 LLEEML-ARGFSCDVSTTTLLVGMLSDDGLDQSVKQ 241
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I + R G++ +A ++ ++ + L P+ TY + G K G +A +
Sbjct: 113 PDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKL 172
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
+ +M ++ + + + +G L + S+ + EE+ + D
Sbjct: 173 FMEMDENACSADGCTYNTITQGFLRNN-ETSRAIQLLEEMLARGFSCD 219
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 50/106 (47%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E ++ +++ P+ + +I + GK+ +AM V+ M + P
Sbjct: 127 LCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMP 186
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ TY +I G+ K G A+ +Y+ M + PP+ + F L+ G
Sbjct: 187 NTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDG 232
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 57/112 (50%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L +Q + A+ + + + + P A+IY +I L + GK++EA + + M ++
Sbjct: 264 IIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEK 323
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD TYT +I G+ ++A+ + +M+++ P+ + + LL
Sbjct: 324 GCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLL 375
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G + A++V++ M + PD T++ +I G+ + G DA+ I
Sbjct: 186 PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRI 245
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ DM + P F I++ L
Sbjct: 246 WSDMAQHRIQPNVYTFSIIIHSLC 269
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G++++A+++W M + + P+ T++ +I K +A+ +
Sbjct: 221 PDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGL 280
Query: 200 YEDMIKSPD-PPEELPFRILLKGLLPHPLL--RSKVKKDFEE--LFPEKHAY 246
++ PD P+ + ++ L + + ++K EE P+K+ Y
Sbjct: 281 LNELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTY 332
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPADAMNI 199
+AY Y L+ +L G++++ + ++E ++ ++ PD ++ VI+G + G A+ +
Sbjct: 45 EAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALEL 104
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E M + P+ + IL+ GL
Sbjct: 105 VERMNEFGCSPDTVTHNILVDGLC 128
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 45/82 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI L R G + AM++ M + + + T+T +I GF KDG+ +A +
Sbjct: 438 PSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARL 497
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ MI S P E+ F ++++G
Sbjct: 498 FDKMIDSSVVPNEVTFNVMIEG 519
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 31/65 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + G +N+A Q+W M + L PD Y +IR G + I
Sbjct: 787 PDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGEFDKGLGI 846
Query: 200 YEDMI 204
Y DM+
Sbjct: 847 YSDMV 851
>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
Length = 596
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF ++ +QD QP+ Y +I A AR G+MN A ++ E M + PD T++ +I
Sbjct: 259 AMRIFRLM-QQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFSTII 317
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+G+ + + M + P+ + + LL+G + LL E+L+ +
Sbjct: 318 KGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWL-----CEKLWSQMQ 372
Query: 245 AYDPPEEIF 253
Y+ P F
Sbjct: 373 EYNIPPSNF 381
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 64/115 (55%), Gaps = 4/115 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ ++++ +P+ +Y LI + ++++AM+++ M+++ + P++ TY VI
Sbjct: 223 AMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQDGVQPNTVTYNSVI 282
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ G A + E+M+ S P+ + F ++KG ++S + K F+ L
Sbjct: 283 DACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKGY----CVQSDMDKSFQLL 333
>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
Length = 332
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P+ Y++ L+ A A+ K+ EAM V+ MR++ L P++ TY VI K G
Sbjct: 180 RNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVE 239
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DAM +E MI P+ + + L+ L
Sbjct: 240 DAMLYFEQMIDEGLRPDSIVYNSLIHSLC 268
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + +++AM+V +M K + PD TY ++ GF G P +A+
Sbjct: 44 SPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIV 103
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M P+ + + L+ L + ++ +K F+ + K P +G L
Sbjct: 104 FLKKMRSDGVEPDVVTYNSLMDYLCKNGRC-TEARKIFDSM--TKRGLKPDITTYGTL 158
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 109 RSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGAL 168
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P F IL+
Sbjct: 169 VEMHGLLDLMVRNGIHPNHYVFSILV 194
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 6/138 (4%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
K + E L K I +V+ I+A L + + ++ A+++ + K PD
Sbjct: 30 KTYSTYNEMLDKRISPNVVTY--NSIIAALCKAQTVDK---AMEVLTTMVKS-GVMPDCM 83
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y ++ +G+ EA+ + MR + + PD TY ++ K+G +A I++ M
Sbjct: 84 TYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSM 143
Query: 204 IKSPDPPEELPFRILLKG 221
K P+ + LL+G
Sbjct: 144 TKRGLKPDITTYGTLLQG 161
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V + E+ EE +L +F +R+Q P+A Y +I L ++G++ +AM +E M
Sbjct: 193 LVCAYAKQEKVEEAML---VFSKMRQQGL-NPNAVTYGTVIDVLCKSGRVEDAMLYFEQM 248
Query: 169 RKEDLFPDSQTYTEVIRGFL 188
E L PDS Y +I
Sbjct: 249 IDEGLRPDSIVYNSLIHSLC 268
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A + GK++EA +++ M ++FPD+ TY +I GF K DA +I
Sbjct: 148 PDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHI 207
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P + L+ G
Sbjct: 208 FDLMVSKGGSPNVITINTLIGGCC 231
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 11/156 (7%)
Query: 79 VILGLKRFKDDEEKL---QKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDII 132
++ G+ + D + L +K ++H+ K D+V A++ L + A +F +
Sbjct: 51 IVNGMCKMGDTDSALNLLRKMDESHI----KADVVIYTAIIDRLCKDGHHSKAQNLFTEM 106
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
+ + P+ Y +I GK +A Q+ M + ++ PD T+ +I F+K+G
Sbjct: 107 HDKGIF-PNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGK 165
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++A +Y +M+ P+ + + L+ G H L
Sbjct: 166 ISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRL 201
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 41/91 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ +QP+ Y ++ + + G + A+ + M + + D YT +I KDG +
Sbjct: 38 ENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHS 97
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
A N++ +M P L + ++ G +
Sbjct: 98 KAQNLFTEMHDKGIFPNVLTYNCMIDGCCSY 128
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IFD++ + P+ LI R ++++ +++ M + L PDS +Y +I
Sbjct: 204 AKHIFDLMVSKG-GSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLI 262
Query: 185 RGFLKDGSPADAMNIYEDMIK 205
GF + G A +++++MI
Sbjct: 263 HGFCQAGDLNAAQDLFQEMIS 283
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
QD +P+ Y LI L G + EA+QV + M++ P+ TY+ +I GF K G
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLV 401
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A + MI P + + ++ L + +
Sbjct: 402 GASETWNRMISHGCRPNVVTYTCMVDVLCKNSMF 435
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ + + LI GK+ EA+ +W+ M ++ P+ Y +I G +GS +A+ +
Sbjct: 312 ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQV 371
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M +S P + IL+ G
Sbjct: 372 CDQMQRSGCLPNVTTYSILIDGF 394
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+++ L + + EE A +F I ++ QP+ Y ++ +R G M EA+Q++
Sbjct: 494 ELLDALFRMNKYEE---AFGLFQEIEARN-LQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
PDS TY +I + K G A + E
Sbjct: 550 ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 75 EALFVIL--GLKRFKDDEEKLQKFIKTH------VLRLLKMDIVAVLIELERQEETILAV 126
E LF+ + G KR E+ L+ F + +R+ + A+L E + Q L
Sbjct: 109 EDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT 168
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+ K+D P+ + Y L+ AL + +++ A +++ M + PD+ TYT ++
Sbjct: 169 NM-----KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSS 223
Query: 187 FLKDGSPADA 196
K G DA
Sbjct: 224 LCKAGKIDDA 233
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 100 HVLRLLKMD--------IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
++L+ +KMD + ++ +R A+K+F I + +P IY L+ A
Sbjct: 95 YILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGC-KPTVRIYNHLLDA 153
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L K ++ +M+K+ L P+ TY +++ K+ A ++ +M PP+
Sbjct: 154 LLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPD 213
Query: 212 ELPFRILLKGLL 223
+ + ++ L
Sbjct: 214 AVTYTTMVSSLC 225
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
QD +P+ Y LI L G + EA+QV + M++ P+ TY+ +I GF K G
Sbjct: 342 QDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLV 401
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A + MI P + + ++ L + +
Sbjct: 402 GASETWNRMISHGCRPNVVTYTCMVDVLCKNSMF 435
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ + + LI GK+ EA+ +W+ M ++ P+ Y +I G +GS +A+ +
Sbjct: 312 ANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQV 371
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M +S P + IL+ G
Sbjct: 372 CDQMQRSGCLPNVTTYSILIDGF 394
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+++ L + + EE A +F I ++ QP+ Y ++ +R G M EA+Q++
Sbjct: 494 ELLDALFRMNKYEE---AFGLFQEIEARN-LQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
PDS TY +I + K G A + E
Sbjct: 550 ALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 75 EALFVIL--GLKRFKDDEEKLQKFIKTH------VLRLLKMDIVAVLIELERQEETILAV 126
E LF+ + G KR E+ L+ F + +R+ + A+L E + Q L
Sbjct: 109 EDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYT 168
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+ K+D P+ + Y L+ AL + +++ A +++ M + PD+ TYT ++
Sbjct: 169 NM-----KKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSS 223
Query: 187 FLKDGSPADA 196
K G DA
Sbjct: 224 LCKAGKIDDA 233
Score = 37.0 bits (84), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 100 HVLRLLKMD--------IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
++L+ +KMD + ++ +R A+K+F I + +P IY L+ A
Sbjct: 95 YILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGC-KPTVRIYNHLLDA 153
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L K ++ +M+K+ L P+ TY +++ K+ A ++ +M PP+
Sbjct: 154 LLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPD 213
Query: 212 ELPFRILLKGLL 223
+ + ++ L
Sbjct: 214 AVTYTTMVSSLC 225
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 50/90 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + +PD Y +I L G++++A ++++ M KE P TY +I+ K G+
Sbjct: 271 KDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNALIQVICKKGNV 330
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ +++DMI+ P + + +L++GL
Sbjct: 331 EDAVTVFDDMIRKDYIPNVVTYTVLIRGLC 360
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD + ++D Y P+ Y LI L GK++ AM++ E M+ E P QTY +I
Sbjct: 333 AVTVFDDMIRKD-YIPNVVTYTVLIRGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLI 391
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGL 222
R ++G A++++E M K + P + + I++ +
Sbjct: 392 RYSFEEGEMDKALHLFERMSKGEECLPNQDTYNIVISAM 430
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 6/128 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + K+ P Y LI + + G + +A+ V++ M ++D P+ TYT +I
Sbjct: 298 ARKLFDEMSKEGC-PPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLI 356
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK-----GLLPHPLLRSKVKKDFEEL 239
RG G AM + E M P + +L++ G + L + EE
Sbjct: 357 RGLCHVGKIDRAMKLMERMKNEGCEPVVQTYNVLIRYSFEEGEMDKALHLFERMSKGEEC 416
Query: 240 FPEKHAYD 247
P + Y+
Sbjct: 417 LPNQDTYN 424
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 7/124 (5%)
Query: 125 AVKIFDIIRK-QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A K ++R + + PD Y L R + A+ + M + + P TY +
Sbjct: 186 ASKAASLVRALERRFPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVI 245
Query: 184 IRGFLKDGSPADAMNIYEDMIK--SPD---PPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
++GF + G A N + M K S D P+ + + ++ GL L K +K F+E
Sbjct: 246 LKGFFRAGQLQHAWNFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQL-DKARKLFDE 304
Query: 239 LFPE 242
+ E
Sbjct: 305 MSKE 308
>gi|162460542|ref|NP_001105869.1| pentatricopeptide repeat protein [Zea mays]
gi|95931777|gb|ABF57644.1| pentatricopeptide repeat protein [Zea mays]
Length = 886
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ + K QPD IY L+ A + G M+ A++++E M+KE + P ++T+ +I
Sbjct: 480 AFSIFEDMIKSG-LQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQKERMQPSNRTFRPII 538
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELF 240
GF G A + + M +S P + + L+ GL+ + V K +
Sbjct: 539 EGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKHQVEKAVSVLDKMSIAGIA 598
Query: 241 PEKHAY 246
P +H Y
Sbjct: 599 PNEHTY 604
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+D P+ + + I A + G M A V + M L P+ +T+T +I+G+ + P
Sbjct: 698 KEDGIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLP 757
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ +E+M + P+E + L+ LL
Sbjct: 758 DRALKCFEEMKSAGLKPDEAAYHCLVTSLL 787
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 49/90 (54%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ ++P Y LI + GK+ +A+ + + M + +++TY+ +I GF+
Sbjct: 418 KECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHNNKTYSMLINGFIHLHDF 477
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+A +I+EDMIKS P+ + +L++
Sbjct: 478 ANAFSIFEDMIKSGLQPDRAIYNLLVEAFC 507
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF+ ++K+ QP ++ +I A G M A + MR+ P TY +I
Sbjct: 515 AIRIFERMQKER-MQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALI 573
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G ++ A+++ + M + P E + I+++G
Sbjct: 574 HGLVRKHQVEKAVSVLDKMSIAGIAPNEHTYTIIMRG 610
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ +IY LI AR G + EA + + M+++ + P+ T+T I K G A N+
Sbjct: 670 NTFIYNILIDGWARRGDVWEAADLLKQMKEDGIPPNIHTFTSYINACCKAGDMQRAENVI 729
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
++M P F L+KG LP L+ + L P++ AY
Sbjct: 730 QEMADVGLKPNVKTFTTLIKGWARVSLPDRALKCFEEMKSAGLKPDEAAY 779
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 34/64 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A+++ L+ A A G M A+ E M+ E + TY+ +I G+ K A N
Sbjct: 283 EPNAFVFTSLVHAYAVAGDMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQSADN 342
Query: 199 IYED 202
++++
Sbjct: 343 LFKE 346
Score = 37.0 bits (84), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 33/78 (42%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI A ++E M K L PD Y ++ F K G+ A+ I+E M
Sbjct: 464 YSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFERMQ 523
Query: 205 KSPDPPEELPFRILLKGL 222
K P FR +++G
Sbjct: 524 KERMQPSNRTFRPIIEGF 541
>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +PD + LI L+++G++ EA + M + FPD+ TYT ++ G ++G+
Sbjct: 293 KEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNA 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A+++ ++M P + LL GL LL
Sbjct: 353 LGALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLL 387
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ ++ K+ ++PD ++Y ++ G+ EA+ V++ M++ L PD T+ +I
Sbjct: 250 AMRLVSLLYKE-GFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A N + M + P+ + + L+ G+
Sbjct: 309 FGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMC 347
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+R +PD Y LI + + + EAM++ + KE PD Y +++G+ G
Sbjct: 221 MRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVG 280
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+A+ +Y+ M + P+ + F L+ GL
Sbjct: 281 RGAEAIGVYKKMKEVGLEPDVVTFNTLIFGL 311
>gi|45183613|gb|AAS55478.1| Tha8 [Zea mays]
Length = 263
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 33/246 (13%)
Query: 14 LASIVL-QNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLI 72
+AS++L LT+NP N A P+ G R RG L RG+ L
Sbjct: 1 MASLLLVPRLTRNPCSNPGPSAGHKPRPV------SITCGPRDN-----RGPLQRGRSL- 48
Query: 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIVAVLIELERQEETILAVKIF 129
EA+ I LKR + RLLK D+VA + EL+RQ LA+
Sbjct: 49 STEAILAIQSLKRLTSADRSPAAASAAAATALGRLLKADLVAAMAELQRQGHWSLALAAL 108
Query: 130 DIIRKQDWYQPDAYIYKDLIIAL--ARTGKMNEAMQVWESMRKE------------DLFP 175
I R + WY+PD +Y + + + +G +A +++ + D
Sbjct: 109 HIARAEPWYRPDPALYATFVSSAPHSPSGGEGDAEAAVDALVEAFLEEKARGGGFVDGEE 168
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGL--LPHPLLRSKV 232
D T ++R + G A +YE ++ +E +R++ +G+ L ++V
Sbjct: 169 DVYKLTRLLRALVAKGRGRAAWRVYEAAVRKGGLDVDEYVYRVMARGMKRLGFHEEAAEV 228
Query: 233 KKDFEE 238
+ DF E
Sbjct: 229 EADFAE 234
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD++ + P+ Y Y L+ + ++ EA+Q+ + ++ L PD T+T +I
Sbjct: 221 ARSVFDLMVSKGC-TPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTII 279
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G + G P A ++ + P + + +LL GL H
Sbjct: 280 SGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKH 320
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y Y +I +L+++GK NEA+ + M K P+ Y+ +I G+ G +A +
Sbjct: 164 QPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARS 223
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+++ M+ P + L+ G
Sbjct: 224 VFDLMVSKGCTPNVYTYTSLMNG 246
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 49/92 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ +P+ IY LI +L + GK+ + +++ + E L P+ TYT ++ K+G
Sbjct: 334 QRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLI 393
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A ++ M + P++ + ++++G L H
Sbjct: 394 IEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQH 425
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y L+ AL + G + EA +++ M ++ PD Y +I+GFL+ P+ A
Sbjct: 374 KPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQ 433
Query: 199 IYEDMIK 205
+ E+M+
Sbjct: 434 LVEEMVN 440
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 114 IELERQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
++ER EE AV++ D +RK PD + +I L R G+ A Q++ +
Sbjct: 248 CKIERIEE---AVQLLDETLRK--GLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHG 302
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
P+ TY ++ G K G+ +A ++++M +S P + + IL+ L +
Sbjct: 303 HTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILID-----SLCKCGK 357
Query: 233 KKDFEELFP 241
KD +ELF
Sbjct: 358 IKDGKELFS 366
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI G+M+EA V++ M + P+ TYT ++ G+ K +A+ +
Sbjct: 200 PNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQL 259
Query: 200 YEDMIKSPDPPEELPFRILLKGLL--PHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++ ++ P+ + F ++ GL PL ++ + + H + P +G L
Sbjct: 260 LDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFR-----YICAHGHTPNIMTYGVL 313
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + L+ L GKM++ M +++ M L P+ TY +I K G +A+
Sbjct: 129 EPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALG 188
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M K P + + L+ G
Sbjct: 189 FLKQMEKVGCVPNVVNYSTLIDG 211
>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +PD + LI L+++G++ EA + M + FPD+ TYT ++ G ++G+
Sbjct: 293 KEVGLEPDVVTFNTLIFGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMCREGNA 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A+++ ++M P + LL GL LL
Sbjct: 353 LGALSLLKEMEAKGCNPNSCTYNTLLHGLSKSRLL 387
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ ++ K+ ++PD ++Y ++ G+ EA+ V++ M++ L PD T+ +I
Sbjct: 250 AMRLVSLLYKE-GFKPDCFVYNTIMKGYCMVGRGAEAIGVYKKMKEVGLEPDVVTFNTLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A N + M + P+ + + L+ G+
Sbjct: 309 FGLSKSGRVKEARNFLDIMAEMGHFPDAVTYTSLMNGMC 347
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+R +PD Y LI + + + EAM++ + KE PD Y +++G+ G
Sbjct: 221 MRSSCGAKPDLVTYTILIDNVCNSNNLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVG 280
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A+A+ +Y+ M + P+ + F L+ GL
Sbjct: 281 RGAEAIGVYKKMKEVGLEPDVVTFNTLIFGL 311
>gi|414881815|tpg|DAA58946.1| TPA: hypothetical protein ZEAMMB73_360564 [Zea mays]
Length = 792
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L + K++EA+ +W+ M++ + P TY ++ G+ + G +A+ +
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y +M PP E+ + L+KG +
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYI 476
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
F ++ +D PD +Y + M EA + + SM K+ + D++ YT +I GF
Sbjct: 627 FLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFS 686
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G+ A A+ +Y +M+ + P++ F L GL
Sbjct: 687 KVGNVAFALELYSEMMANHVIPDDKTFTALTHGL 720
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA DL++ A +A+ +++ MR + + D++ Y VIR ++ G DA+ +
Sbjct: 148 PDAKSRTDLLVTTALGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRL 207
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M + P+E + I + GL
Sbjct: 208 FDEMAGAGVKPDERVYAITISGL 230
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L L R+G ++ A ++ + MR+ D+ P+ TY +I ++DG +A +
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767
Query: 200 YEDMIKSPDPPEELPFRIL 218
+++M+ S P++ + IL
Sbjct: 768 HDEMLSSGVVPDDTTYDIL 786
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 78 FVILGL---KRFKDDEEKLQKFIKTHVLRLLKMD-IVAVLIELERQEETILAVKIFDIIR 133
VI GL KR+KD L+ + T V + ++ L + ++ E AV ++D +
Sbjct: 366 LVIKGLLRDKRWKDAIGLLKLVVDTGVPDVFTYGCLIHWLCKHQKLHE---AVNLWDKM- 421
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P Y L++ G+M+EA++++ M + P+ TYT +++G++K +
Sbjct: 422 KEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAF 481
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A + +M ++ + + IL+ GL
Sbjct: 482 DNAYALLNEMRQNGVSCGDYTYNILINGL 510
Score = 40.8 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY LI ++ G + A++++ M + PD +T+T + G + G A +
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLL 733
Query: 201 EDMIKSPDPPEELPFRILL 219
+DM + P + + +L+
Sbjct: 734 DDMRRLDVSPNIVTYNMLI 752
Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 8/149 (5%)
Query: 80 ILGLKRFKDDEEKLQKFIKT-----HVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK 134
I GL + +D + LQ K L +V VL+++ R +E A+++ D +
Sbjct: 227 ISGLCKLRDADRALQVLGKMREAGFEPWELTYSSVVDVLVKVRRMDE---ALRLKDQMLL 283
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ D + L+ G++ +A+ +++ + + + P + TY +I+G +G
Sbjct: 284 ATGKKMDVVLATMLMHGYCLNGEVGKALDLFDEVVSDGVTPTNVTYGVLIKGCDAEGMTD 343
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + MI+ P F +++KGLL
Sbjct: 344 ETYKLCRQMIEQGLLPSTYEFNLVIKGLL 372
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
Y Y LI L ++ E ++ + E P + TY +I GF+K G A +Y
Sbjct: 501 YTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQ 560
Query: 203 MIKSPDPPEELPFRILLKG 221
M K P + + + G
Sbjct: 561 MRKKGITPNIVTYTSFIDG 579
>gi|414881814|tpg|DAA58945.1| TPA: hypothetical protein ZEAMMB73_003881 [Zea mays]
Length = 792
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L + K++EA+ +W+ M++ + P TY ++ G+ + G +A+ +
Sbjct: 393 PDVFTYGCLIHWLCKHQKLHEAVNLWDKMKEAGVKPSIVTYHSLLLGYCEKGRMDEALKL 452
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y +M PP E+ + L+KG +
Sbjct: 453 YSEMPDKGFPPNEVTYTTLMKGYI 476
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
F ++ +D PD +Y + M EA + + SM K+ + D++ YT +I GF
Sbjct: 627 FLVLLLKDGLTPDVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRVVADTEIYTTLIDGFS 686
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G+ A A+ +Y +M+ + P++ F L GL
Sbjct: 687 KVGNVAFALELYSEMMANHVIPDDKTFTALTHGL 720
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 46/83 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA DL++ AR +A+ +++ MR + + D++ Y VIR ++ G DA+ +
Sbjct: 148 PDAKSRTDLLVTTARGASAADALTLFDEMRGKGCYADAKMYDVVIRACVRGGMHCDAVRL 207
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M + P+E + I + GL
Sbjct: 208 FDEMAGAGVKPDERVYAITISGL 230
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L L R+G ++ A ++ + MR+ D+ P+ TY +I ++DG +A +
Sbjct: 708 PDDKTFTALTHGLCRSGDIDGAKRLLDDMRRLDVSPNIVTYNMLINACVRDGKLQEAFQL 767
Query: 200 YEDMIKSPDPPEELPFRIL 218
+++M+ S P++ + IL
Sbjct: 768 HDEMLSSGVVPDDTTYDIL 786
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 78 FVILGL---KRFKDDEEKLQKFIKTHVLRLLKMD-IVAVLIELERQEETILAVKIFDIIR 133
VI GL KR+KD L+ + T V + ++ L + ++ E AV ++D +
Sbjct: 366 LVIKGLLRDKRWKDAIGLLELVVDTGVPDVFTYGCLIHWLCKHQKLHE---AVNLWDKM- 421
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P Y L++ G+M+EA++++ M + P+ TYT +++G++K +
Sbjct: 422 KEAGVKPSIVTYHSLLLGYCEKGRMDEALKLYSEMPDKGFPPNEVTYTTLMKGYIKKKAF 481
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A + +M ++ + + IL+ GL
Sbjct: 482 DNAYALLNEMRQNGVSCGDYTYNILINGL 510
Score = 40.8 bits (94), Expect = 0.62, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 38/79 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY LI ++ G + A++++ M + PD +T+T + G + G A +
Sbjct: 674 DTEIYTTLIDGFSKVGNVAFALELYSEMMANHVIPDDKTFTALTHGLCRSGDIDGAKRLL 733
Query: 201 EDMIKSPDPPEELPFRILL 219
+DM + P + + +L+
Sbjct: 734 DDMRRLDVSPNIVTYNMLI 752
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 33/79 (41%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
Y Y LI L ++ E ++ + E P + TY +I GF+K G A +Y
Sbjct: 501 YTYNILINGLYMVNRVCEVDEMLKRFLSEGFVPTTMTYNSIINGFVKAGMMGSAFGMYRQ 560
Query: 203 MIKSPDPPEELPFRILLKG 221
M K P + + + G
Sbjct: 561 MRKKGITPNIVTYTSFIDG 579
>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 732
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI L ++ EA ++++ M+ E +FP S TY +I GF K+ + A++
Sbjct: 405 SPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALD 464
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ +M S P + F L+ G
Sbjct: 465 LCSEMTSSGVEPNIITFSTLIDG 487
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ YIY I L R KM EA +++E M+ + P+ TY+ +I G+ K G+ A
Sbjct: 265 KPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYG 324
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y++++ + P + F L+ G
Sbjct: 325 LYKEILVAELLPNVVVFGTLVDGFC 349
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y+Y LI ++G M EAM + M +L PD TYT +I G + A+A +
Sbjct: 371 PNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAEANRL 430
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M P + + L+ G
Sbjct: 431 FQRMKNERIFPSSVTYNSLIHGFC 454
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI + + AM ++ M + + PD TYT +I K+ + +A+
Sbjct: 475 EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALR 534
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y DM+++ P + F L+ G
Sbjct: 535 LYSDMLEAGIHPNDHTFACLVDGF 558
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + M EA++++ M + + P+ T+ ++ GF K+G +DA++
Sbjct: 511 PDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAIDF 570
Query: 200 Y 200
Y
Sbjct: 571 Y 571
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
+L R+ + A K+F++++ P+ Y Y +I +TG + +A +++ + +L
Sbjct: 277 DLCRENKMEEAEKMFELMKIHG-VVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELL 335
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
P+ + ++ GF K A +++ M+K P + L+ G
Sbjct: 336 PNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHG 382
>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rehmannii]
Length = 420
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + M++A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 198 QPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAME 257
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 258 IYKQMLSQXLLPDJITYNTLVYGLC 282
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 128 IFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+FD I K W +P Y L+ R G ++E ++ +MR + PD TY+ +I G
Sbjct: 153 VFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLING 210
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
K+ DA ++++M+ P + F L+ G
Sbjct: 211 LCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDG 245
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y L+ L + G +N+A + + M + L PD TYT +
Sbjct: 254 LAMEIYKQMLSQXLL-PDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTL 312
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 313 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLC 352
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY ++ G K G A +
Sbjct: 234 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGL 293
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 294 IDEMXXKGLKPDKFTYTTLIDGCC 317
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD+ TYT +I F K G
Sbjct: 334 QENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVW 393
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M ++ P + + +L+ G
Sbjct: 394 KGSKLLKEMQRNGHVPXVVTYNVLMNG 420
>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
[Burroughsia fastigiata]
Length = 431
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI L + KM+ A ++++ M + L P+ T+T +I G K+G AM I
Sbjct: 210 PDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y+ M+ P+ + + L+ GL
Sbjct: 270 YKQMLSQSLLPDLITYNTLIYGLC 293
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G +N+A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLC 363
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKITYTTLIDGCC 328
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ A ++++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDG 256
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ + D Y LI L + G+ +A ++ M L PD+ TYT +I K G
Sbjct: 345 QENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVG 404
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+ ++M P + + +L+ G
Sbjct: 405 KGSKLLKEMQXDGHAPSVVTYNVLMNG 431
>gi|297741482|emb|CBI32614.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L++ R+ L + D+ + Y PD+ IY L+ + G++ + +++ E+MR +D
Sbjct: 332 LVQAMREGRQDLCKILRDVNSENPAYAPDSRIYTTLMKGYMKEGRVTDTVRMLEAMRHQD 391
Query: 173 ---LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD TYT V+ +K GS A + +M + P + + ILLKG
Sbjct: 392 DSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNILLKG 443
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 126 VKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
V++ + +R QD QPD Y ++ AL + G M+ A QV M + + + TY +
Sbjct: 381 VRMLEAMRHQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNIL 440
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
++G+ + A + +M+ P+ + + L+ G +
Sbjct: 441 LKGYCEQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCI 481
Score = 37.0 bits (84), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA K+FD + + + D + L+ A R G + EA + + MR+ +P+ TY +
Sbjct: 523 LANKVFDEMLRDPRVKVDLVAWNMLVEAHCRLGLVEEAKKTVQRMRENGFYPNVATYGSL 582
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
G P +A+ ++ + +K P E L
Sbjct: 583 ANGIALARKPGEALLLWNE-VKERCPDEGL 611
>gi|224103707|ref|XP_002313163.1| predicted protein [Populus trichocarpa]
gi|222849571|gb|EEE87118.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 110 VAVLIELERQEETI-LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
VAV+I + +E + +A + + + K D ++PD Y Y LI A G+ EA+ V++ M
Sbjct: 1 VAVIINMLGKEGKVSVAASLLNNLHK-DGFEPDVYAYTSLITACVSNGRYREAVMVFKKM 59
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAM-NIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
+E P TY ++ + K G P + + ++E M + P+E + L+ L
Sbjct: 60 EEEGCKPTLITYNVILNVYGKMGMPWNKITGLFEGMKNAGILPDEYTYNTLITCCRRGSL 119
Query: 228 LR--SKVKKDFEEL--FPEKHAYDPPEEIFGK 255
+ V +D + + P+K Y+ +++GK
Sbjct: 120 YEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGK 151
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ P Y LI A AR G + EAM++ M + + D TYT ++ GF++ G
Sbjct: 168 NGCSPSIVTYNSLISAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFVRTGKDES 227
Query: 196 AMNIYEDMIKSPDPPEELPFRILLK 220
AM ++E+M + P F L+K
Sbjct: 228 AMRVFEEMRTAGCKPNICTFNALIK 252
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A R G+M EA ++ MR+ L PD TY + + D +A++
Sbjct: 521 KPDIISYNTVIFAYCRNGRMKEASHIFSEMRESGLIPDVITYNTFVASYAADSMFEEAID 580
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ MIK P + + ++ G
Sbjct: 581 VVCYMIKHGCKPNQNTYNSVIDG 603
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+K+F+ I K PD + L+ + G +E V++ M++ P+ TY +I
Sbjct: 264 MKVFEEI-KICCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRVGFVPERDTYNTLIS 322
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ + GS AM +Y+ M+ + P+ + +L L
Sbjct: 323 AYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAAL 359
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P+ Y LI A +R G ++AM +++ M + PD TY V+ + G
Sbjct: 306 KRVGFVPERDTYNTLISAYSRCGSFDQAMAMYKRMLDTGITPDLSTYNAVLAALARGGLW 365
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ I +M P EL LL
Sbjct: 366 EQSEKILAEMQDGMCKPNELTHCSLL 391
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ ++ + PD Y L+ ++ ++ EA++V M P TY +I
Sbjct: 123 AAAVFEDMKSMG-FVPDKVTYNTLLDVYGKSRRIKEAIEVLREMEVNGCSPSIVTYNSLI 181
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ +DG +AM + M++ + + +L G +
Sbjct: 182 SAYARDGLLEEAMELKNQMVERGIKLDVFTYTAMLSGFV 220
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 36/89 (40%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI R EA V+E M+ PD TY ++ + K +A+ +
Sbjct: 102 PDEYTYNTLITCCRRGSLYEEAAAVFEDMKSMGFVPDKVTYNTLLDVYGKSRRIKEAIEV 161
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+M + P + + L+ LL
Sbjct: 162 LREMEVNGCSPSIVTYNSLISAYARDGLL 190
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E A K+FD++ + +PD + Y LI + ++ EA Q++ M + L PD
Sbjct: 163 QAEVFEARKLFDVMITKGC-KPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIV 221
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+Y +I G + G +A +++++M+ + + P+ + ILL G L
Sbjct: 222 SYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYL 271
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA ++++M PD TY+ ++ GF K G A A +
Sbjct: 218 PDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRL 277
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M + P + + IL+ + L+ + +K F ELF +
Sbjct: 278 FRAMQSTYLKPNMVMYNILIDAMCKSRNLK-EARKLFSELFVQ 319
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQPD + Y +I L + G+ A +++ M + PD TY+ +I KD +A+
Sbjct: 6 YQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 65
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+I+ M P + L++GL
Sbjct: 66 DIFSYMKAKGISPNIFTYNSLIQGLC 91
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++ L + ET+ A +F + + QPD Y +I +L + ++NEA+ ++ M+
Sbjct: 14 TTIINGLCKIGETVAAAGLFKKMGEAGC-QPDVVTYSTIIDSLCKDRRVNEALDIFSYMK 72
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ + P+ TY +I+G +A + +M+ P + F +L+
Sbjct: 73 AKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 123
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ A +R GK+ +AM+++ MR + P+S T+ +I K+ + ++ M
Sbjct: 290 EPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALIGMHGKNKNFSEMMV 349
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I+EDM P+ + + LL G + S+V K F + +K ++P + F L
Sbjct: 350 IFEDMQACGVEPDIVTWNSLL-GAFGKNGMYSEVLKVFRGM--KKAGFEPDKATFNIL 404
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 128 IFDIIRKQDWYQ---------------PDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
+ D+ K WY P+ Y +L+ A R G N A ++ +SM +
Sbjct: 229 LLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKG 288
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ PD TYT ++ + + G AM IY M S P F L+
Sbjct: 289 IEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNALI 335
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + L+ A + G +E ++V+ M+K PD T+ +I + + GS A++
Sbjct: 360 EPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALS 419
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
IY+ M+++ P+ F LL L
Sbjct: 420 IYDGMLQAGCTPDLATFNTLLAAL 443
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 9/194 (4%)
Query: 70 KLIGKEALFVILGLKRFKDDEEKLQKF--IKTHV-LRLLKMDIVAVLIELERQEETILAV 126
L E L ++ GL R + L+ F ++ V R + I +L L R+ +
Sbjct: 43 NLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVMLRILGRESQLTTVS 102
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++F +R++ Y D Y Y LI AL+R K EA+ +E M++ P TY +I
Sbjct: 103 RLFKSLREEG-YPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDL 161
Query: 187 FLKDG-SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK----VKKDFEELFP 241
+ K G S + + ++E+M P+E + + L + P
Sbjct: 162 YGKKGRSWENILELFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTP 221
Query: 242 EKHAYDPPEEIFGK 255
++ Y+ +++GK
Sbjct: 222 DRVTYNALLDVYGK 235
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + ++ G+++ A +++ M + PDS TY + ++ G +A+++
Sbjct: 606 PDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSV 665
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ M K+ P+E+ +R L+
Sbjct: 666 VKHMHKTGCKPDEVTYRTLV 685
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E IL ++F+ ++ Q QPD Y Y I A A EA +++ M+ + PD
Sbjct: 167 RSWENIL--ELFEEMKAQG-IQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDR 223
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY ++ + K G +A N+ ++M + P + + LL
Sbjct: 224 VTYNALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELLSAF 268
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++L R + A++I++ +R + P+++ + LI + +E M ++E M+
Sbjct: 297 TSLLSAYSRAGKVEQAMEIYNQMRTSNC-TPNSFTFNALIGMHGKNKNFSEMMVIFEDMQ 355
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ PD T+ ++ F K+G ++ + ++ M K+ P++ F IL++
Sbjct: 356 ACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIE 406
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/131 (17%), Positives = 66/131 (50%)
Query: 89 DEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
++E + + T L ++++++ L R+ + A+++F+ +R+ ++PD +
Sbjct: 29 NDECVSSVLTTSEPNLSSSELLSIMKGLGREGQWNKALEVFNWMRQSVNFRPDGVTIAVM 88
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
+ L R ++ ++++S+R+E D YT +I ++ +A+ +E M ++
Sbjct: 89 LRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLISALSRNRKFKEALGFFEQMKEAGP 148
Query: 209 PPEELPFRILL 219
P + + +++
Sbjct: 149 QPSLVTYNVII 159
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+K+F ++K ++PD + LI A R G ++A+ +++ M + PD T+ ++
Sbjct: 383 LKVFRGMKKAG-FEPDKATFNILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLA 441
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
++G A I +++ +S P ++ + +L
Sbjct: 442 ALAREGRWEHAELILDELNRSSYKPNDIAYASML 475
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ + + A +IF + + QPD++ Y + G EA+ V + M K
Sbjct: 613 TVIFSYSKHGQLSSATRIFHEM-VSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHK 671
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
PD TY ++ + K G + I + IKS DP
Sbjct: 672 TGCKPDEVTYRTLVDAYCKIGKFEEVERILK-FIKSSDP 709
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G +++ ++++ M + + ++ TY +I
Sbjct: 357 ATQMFDSMGSKS-FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI 415
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
RGF K G+ +++I+++MI S P+ + R +L GL
Sbjct: 416 RGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ + +T+ A+ + + + +PD IY +I L + G+ +A ++ M+ + +FP
Sbjct: 126 MCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
D TY+ +I GF G ++A + ++M+ P+ + F L+ L+ L S
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNS 240
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D + +PD Y LI L GK EA +++E M + PD+ TY+ +I G K
Sbjct: 291 DATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCK 350
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+A +++ M P + F L+ G ++ + D ELF E
Sbjct: 351 QSRLDEATQMFDSMGSKSFSPNIVTFNTLITG-----YCKAGMVDDGLELFCE 398
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQ 135
++ G+ + D L K L +K D+V A++ L + A +F I Q
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLF--IEMQ 179
Query: 136 D-WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y +I +GK +EA ++ + M + PD T++ +I +K+G
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLN 239
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
A ++ ++MI S P + LL GL L KD E+F
Sbjct: 240 SAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKL-----KDALEMF 280
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+ +I G+ K G D + +
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L++G
Sbjct: 396 FCEMGRRGIVANAITYITLIRG 417
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRK------- 170
VK D+ QD Q P+ L+ L +GK+ +A++++++M+K
Sbjct: 233 VKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292
Query: 171 ----EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
+ PD QTY +I G + +G +A +YE+M P+ + + ++ GL
Sbjct: 293 THAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQS 352
Query: 227 LL 228
L
Sbjct: 353 RL 354
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + QD + PD Y + L+ L + G + A+++ + M +E PD TY VI
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A+ + MI P + + L+ L
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLC 376
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I D++ Q+ Y PD Y Y +I L + G++ EA++ + M D P++ TY +I
Sbjct: 314 AIEIMDVML-QEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLI 372
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+ +A + + P+ F L++GL
Sbjct: 373 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 411
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K DI++ + +PD Y LI L + G++ A ++ S++ + + Y VI
Sbjct: 558 KAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVI 617
Query: 185 RGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
+G + +A+N++ +M++ + P+ + +RI+ +GL
Sbjct: 618 QGLFRKRKTTEAINLFREMLEQNEAAPDAVSYRIVFRGLC 657
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI AL R ++ A+ + E M L PD +T+T +++G++++G A+
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALR 245
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK-----KDFEELFPEKHAYD 247
I E M++ + +++ G + + + + FP+++ ++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFN 299
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+++F+ +R + +PD + Y LI +L GK++EA+ + + M TY +
Sbjct: 418 VAMELFEEMRSKGC-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTL 476
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I GF K +A I+++M + + L+ GL
Sbjct: 477 IDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLC 516
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++ Y LI L ++ ++ +A Q+ + M E PD TY ++ F + G A +I
Sbjct: 504 NSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIV 563
Query: 201 EDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFEELFPEKHAYDP 248
+ M + P+ + + L+ GL + LLRS K L P HAY+P
Sbjct: 564 QAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI-ALTP--HAYNP 615
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L T AM+++E MR + PD TY +I G +A+N+
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ M S + + L+ G +R + EE+F E +
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIR-----EAEEIFDEMEVH 499
>gi|224102855|ref|XP_002312829.1| predicted protein [Populus trichocarpa]
gi|222849237|gb|EEE86784.1| predicted protein [Populus trichocarpa]
Length = 734
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 1/125 (0%)
Query: 105 LKMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
L M + VLI L Q A+++FDI+ K+ P +++K L L + G + EA
Sbjct: 195 LGMWVYTVLINGLCHQRYVGEAIQVFDIMCKRTGSPPTLHMFKTLFFGLCKAGWLVEAEL 254
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
V+E M + F D YT ++ K+ AM +Y M+K P+ + L+ G L
Sbjct: 255 VFEEMEVQGFFVDKVMYTSLMNAHGKNKKMKMAMRVYFRMLKKGCDPDICTYNTLIHGFL 314
Query: 224 PHPLL 228
L
Sbjct: 315 KMGLF 319
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
E +QE+ A I D + K+ +P IY +I L++ +++EA ++ MR++ L
Sbjct: 463 EYCKQEDLASAFGILDQM-KEMGPKPSVAIYDCIIACLSQQRRISEAETLFHRMRRDGLD 521
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD Y +I + +DG A+N++E MI++ P + L+ G L
Sbjct: 522 PDEVAYMTMINAYARDGRGDKALNLFEKMIENAIQPSSYSYTSLISGEL 570
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+A L + R E A +F +R+ D PD Y +I A AR G+ ++A+ ++E M
Sbjct: 495 IIACLSQQRRISE---AETLFHRMRR-DGLDPDEVAYMTMINAYARDGRGDKALNLFEKM 550
Query: 169 RKEDLFPDSQTYTEVIRGFLKD 190
+ + P S +YT +I G LKD
Sbjct: 551 IENAIQPSSYSYTSLISGELKD 572
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 131 IIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
++R+ D QP+ +Y +I ++ + +NEA ++ M E + PD TY+ +I GF
Sbjct: 165 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFF 224
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G DA++++ MI P+ F IL+ G
Sbjct: 225 IVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFC 259
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ + Q PD Y +I + K++EAM +++ M +++ P+ TYT +I
Sbjct: 302 ANSIFNTM-AQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLI 360
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-------PLLRSKVKKDFE 237
G K G + A+ + ++M PP+ + + +L L + LL + FE
Sbjct: 361 DGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFE 420
Query: 238 ELFPEKHAYD 247
+LF + + D
Sbjct: 421 DLFVKGYNLD 430
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F ++ KQ +P+ Y L+ ++N+A ++ +M + + PD+Q+Y +I GF
Sbjct: 270 VFAMMMKQGI-KPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGF 328
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K +AMN+++ M P + + L+ GL
Sbjct: 329 CKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLC 364
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI GK+ +A+ ++ M E++ PD T+ ++ GF KDG +
Sbjct: 210 SPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKT 269
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M+K P + + L+ G
Sbjct: 270 VFAMMMKQGIKPNVVTYCSLMDG 292
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y + L+ + GKM E V+ M K+ + P+ TY ++ G+ A +
Sbjct: 245 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANS 304
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFPEKHA 245
I+ M + P+ + I++ G K+KK E LF + H
Sbjct: 305 IFNTMAQGGVNPDTQSYNIMINGF-------CKIKKVDEAMNLFKKMHC 346
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI L + GK++EA ++E M + D TY+ +I G K G +A +
Sbjct: 321 PDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLL 380
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M++ PP + + L+KGL
Sbjct: 381 LARMVRMGTPPSTMTYNSLIKGLC 404
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%)
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
+ D P+ Y LI L + ++++A+++ ESM+ PD TYT ++ G K+
Sbjct: 104 KMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESK 163
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A A + +M+ + P + + LL GL
Sbjct: 164 VAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 194
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 129 FDI--IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ + D D Y LI L + G+++EA + M + P + TY +I+G
Sbjct: 343 FDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 402
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+A+ + E+M +S P + + IL+ G+ + S F+E+
Sbjct: 403 LCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMI 456
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK-DGSPADAMN 198
P Y LI L ++EA+++ E M + + P + TY +I G + + + A++
Sbjct: 391 PSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDSAALD 450
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+++MI + P+ + + ILL+GL K KD EL
Sbjct: 451 YFQEMIDNGVIPDHITYSILLEGL--------KKSKDLHEL 483
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I L R+ +++EA ++ ++ PD Y+ +I G K G +A +
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+YE M + + + L+ GL
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLC 369
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G +++ ++++ M + + ++ TY +I
Sbjct: 357 ATQMFDSMGSKS-FSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLI 415
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
RGF K G+ +++I+++MI S P+ + R +L GL
Sbjct: 416 RGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTGL 453
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 58/115 (50%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ + +T+ A+ + + + +PD IY +I L + G+ +A ++ M+ + +FP
Sbjct: 126 MCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFP 185
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
D TY+ +I GF G ++A + ++M+ P+ + F L+ L+ L S
Sbjct: 186 DIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNS 240
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 5/113 (4%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D + +PD Y LI L GK EA +++E M + PD+ TY+ +I G K
Sbjct: 291 DATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCK 350
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+A +++ M P + F L+ G ++ + D ELF E
Sbjct: 351 QSRLDEATQMFDSMGSKSFSPNIVTFNTLITG-----YCKAGMVDDGLELFCE 398
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQ 135
++ G+ + D L K L +K D+V A++ L + A +F I Q
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLF--IEMQ 179
Query: 136 D-WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y +I +GK +EA ++ + M + PD T++ +I +K+G
Sbjct: 180 DKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLN 239
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
A ++ ++MI S P + LL GL L KD E+F
Sbjct: 240 SAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKL-----KDALEMF 280
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+ +I G+ K G D + +
Sbjct: 336 PDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLEL 395
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L++G
Sbjct: 396 FCEMGRRGIVANAITYITLIRG 417
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRK------- 170
VK D+ QD Q P+ L+ L +GK+ +A++++++M+K
Sbjct: 233 VKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDA 292
Query: 171 ----EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
+ PD QTY +I G + +G +A +YE+M P+ + + ++ GL
Sbjct: 293 THAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQS 352
Query: 227 LL 228
L
Sbjct: 353 RL 354
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD K P Y LI + G++ EA ++W+ M + P++ TY +I
Sbjct: 385 ARKLFDEFEKGSI--PSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLI 442
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL------------LPHPLLRSKV 232
G K+G+ + + + E+M++ P + F IL +GL + ++ KV
Sbjct: 443 EGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNGKV 502
Query: 233 KKDFEELFPEKHA 245
K+ ELF +K A
Sbjct: 503 DKESWELFLKKFA 515
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ G M A +V E M +PD+ TYT ++ G+ K G ++A +
Sbjct: 224 PNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATV 283
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+DM K+ P E+ + ++++ L
Sbjct: 284 MDDMEKNEIEPNEVTYGVMIRALC 307
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L +++++ A +FD + ++ + PD+ + +I AL K++EA +W M K + P
Sbjct: 306 LCKEKKSGEARNMFDEMLERS-FMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMP 364
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D+ + +I K+G +A ++++ K P L + L+ G+
Sbjct: 365 DNALLSTLIHWLCKEGRVTEARKLFDEFEKG-SIPSLLTYNTLIAGMC 411
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + D + K + +P+ Y +I AL + K EA +++ M + PDS +VI
Sbjct: 280 AATVMDDMEKNE-IEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVI 338
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+D +A ++ M+K+ P+ L+ L + ++ +K F+E
Sbjct: 339 DALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRV-TEARKLFDEF 392
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VLI+ +R + L +F ++ P+ + L+ AL + + A +V + +
Sbjct: 161 LLNVLIQNQRFD---LVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI 217
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P+ TYT ++ G++ G A + E+M+ P+ + +L+ G
Sbjct: 218 PSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDG 270
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 236 SPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 295
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ M P + +R L+ L + ++ +K F+ +
Sbjct: 296 TLKKMRSDGVEPNVVTYRSLMNYLCKNGRC-TEARKIFDSM 335
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +P+ Y+ L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 301 RSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 360
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 361 VEMHALLDLMVRNGIQPDHHVFNILI 386
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 16/171 (9%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
K + E L + I +V+ I+A L + + ++ A+++ + + K + PD
Sbjct: 222 KAYSTYHEMLDRRISPNVVTY--SSIIAALCKAQAMDK---AMEVLNTMVK-NGVMPDCM 275
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y ++ +G+ EA+ + MR + + P+ TY ++ K+G +A I++ M
Sbjct: 276 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSM 335
Query: 204 IKSPDPPEELPFRILLKGLLP-------HPLLRSKVKKDFEELFPEKHAYD 247
K P+ +R LL+G H LL V+ + P+ H ++
Sbjct: 336 TKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQ---PDHHVFN 383
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ QPD +++ LI A A+ K+++AM V+ MR+ L P+ Y VI K GS
Sbjct: 372 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVD 431
Query: 195 DAMNIYE 201
DAM +E
Sbjct: 432 DAMLYFE 438
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
RQ A+++FD + +Q +PD Y LI + R G + +A ++W+ M ++ P+
Sbjct: 414 RQGNFENALQLFDTLLRQRL-RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I + G DA ++M+K + P + ++KG
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKG 516
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E AVK + ++ + + PD + LI +R G+M+ A M+ L PD
Sbjct: 274 RVGEVKEAVKFYKEMQHR-YVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG 332
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-PHPLLRS-KVKKD 235
YT VI GF + GS ++A+ + ++M+ P+ + + LL GL H LL + K+ +
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNE 392
Query: 236 FEE 238
EE
Sbjct: 393 MEE 395
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++E A +F+I+ K+ +PDA Y +I + G M +A +V++ M + PD
Sbjct: 554 KEENMHGAFNVFNIMEKE-MVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDR 612
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
TY +I G + G+ A ++++MI P++
Sbjct: 613 YTYMSLINGHVTAGNSKQAFQLHDEMIHRGFAPDD 647
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I R+G + + Q + MR++++FPD T+ +I G++K+ + A N+
Sbjct: 505 PNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNV 564
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M K P+ + + +++ G
Sbjct: 565 FNIMEKEMVRPDAVTYNMIINGF 587
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+QD PD + LI + M+ A V+ M KE + PD+ TY +I GF + G+
Sbjct: 534 RQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNM 593
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
DA +++ M S P+ + L+ G
Sbjct: 594 QDAGRVFKGMGDSGIEPDRYTYMSLING 621
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G A+Q+++++ ++ L PD TY +I G + G A A +
Sbjct: 400 PDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANEL 459
Query: 200 YEDMIKSPDPPEELPFRILL 219
++DM P + + IL+
Sbjct: 460 WDDMHAREILPNHITYSILI 479
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I R G M+EA++V + M PD TY ++ G K DA +
Sbjct: 330 PDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKL 389
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + P+ F L+ G
Sbjct: 390 LNEMEERGVTPDLCTFTTLIHG 411
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + ++ +A ++ M + + PD T+T +I G+ + G+ +A+ +
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQL 424
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ +++ P+ + + L+ G+
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMC 448
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI A R G ++ A+ + +SM L P TY V++G K A +
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ M + P+ F IL+ G ++ VK ++E+ +H Y P+ +
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKF-YKEM---QHRYVTPDVV 298
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y Y +I L + G+++EA++V E M+ + PD TY+ +I GF K G + +
Sbjct: 324 NVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLI 383
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD-FEELFPEKHAYD 247
E+M S P + + L GL L S + D F +L + YD
Sbjct: 384 EEMKYSNMEPSLVSYSSLFHGLCKKRL--SDISLDIFRDLGAAGYKYD 429
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +M EA +++ M + + PD +YT VI GF + G A +
Sbjct: 603 PDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWAL 662
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M++ P + + L+ G
Sbjct: 663 FNEMLQRGHLPTVVTYTSLVDG 684
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L ++ E A+K+ + + K PD Y Y LI + G + + + + E M+
Sbjct: 330 AIIHGLCKKGELDEALKVLEEM-KSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKY 388
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
++ P +Y+ + G K +++I+ D+ + ++ + IL+KG L S
Sbjct: 389 SNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDS 448
Query: 231 KVKKDFEELFPEKHAYDPPE 250
K EE+ A DP
Sbjct: 449 -AHKLMEEMVRNNLAPDPSN 467
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + + ++ Q + P+ + Y +I L + K A++++ M K ++ P Y+ +I
Sbjct: 519 ALNLMNEMQTQGIF-PNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVVYSTLI 577
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
GF K + A+ +Y M+K P+ + + IL+ +L H
Sbjct: 578 DGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILIN-ILCH 617
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AV+ L ++ ++ A+++F ++ K++ P +Y LI A+ +A+ ++ M K
Sbjct: 540 AVINRLCKERKSERALELFPLMLKRNVL-PSVVVYSTLIDGFAKQSNSQKALMLYARMLK 598
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ PD YT +I +A N+++ M ++ P+++ + ++ G +R
Sbjct: 599 IGVTPDMVAYTILINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMR- 657
Query: 231 KVKKDFEELFPEKH 244
K F E+ H
Sbjct: 658 KAWALFNEMLQRGH 671
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P +I A R G++ EA+ + M+ + +FP+ TY VI K+ A+ +
Sbjct: 498 PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALEL 557
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M+K P + + L+ G
Sbjct: 558 FPLMLKRNVLPSVVVYSTLIDG 579
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + + P+ Y LI + ++++AM ++ M +++L PD+ TY+ +I
Sbjct: 325 AVKVFDTMVCKGC-MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 383
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G DA+ ++ +M+ P + +RILL
Sbjct: 384 HGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 418
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + LI + GK+ EA+ +++ M E PD TY +I G K G+ + A+
Sbjct: 127 HQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI 186
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M++ P + ++ L
Sbjct: 187 RLLGSMVQKNCQPNVFAYNTIIDSLC 212
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + ++ A V + K PD+ T+T +IRG +G +A+++
Sbjct: 94 PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHL 153
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFEELFPEKHAYDP 248
++ MI P+ + + L+ GL LL S V+K+ + P AY+
Sbjct: 154 FDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQ---PNVFAYNT 206
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + ++ AL + GK+ EA V + M + + P+ TYT ++ G +A+ +
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ P + + L+ G
Sbjct: 329 FDTMVCKGCMPNVISYNTLING 350
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI AL + + M + PD ++ V+ K+G +A +
Sbjct: 233 SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHD 292
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + MI+ P + + L+ G H LL
Sbjct: 293 VVDKMIQRGVEPNVVTYTALMDG---HCLL 319
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI L + GK++EA ++E M + D TY+ +I G K G +A +
Sbjct: 399 PDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLL 458
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M++ PP + + L+KGL
Sbjct: 459 LARMVRMGTPPSTMTYNSLIKGLC 482
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D P+ Y LI L + ++++A+++ ESM+ PD TYT ++ G K+ A
Sbjct: 185 DRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA 244
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + +M+ + P + + LL GL
Sbjct: 245 AWEVLREMLDAGCVPNLVTYNSLLHGLC 272
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y L+ R G++++A + ++ MR ++L P+ + +I G K DA+
Sbjct: 6 QPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALR 65
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M S + + + LL GL
Sbjct: 66 CFRAMQGSGIVADTVIYTALLSGL 89
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 129 FDI--IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ + D D Y LI L + G+++EA + M + P + TY +I+G
Sbjct: 421 FDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ + E+M +S P + + IL+ G+
Sbjct: 481 LCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMC 517
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 13/105 (12%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-----DSQTYTEVIRGFLKDGSPA 194
P A Y LI + R +++ A+ + E + + D+ Y+ +I G K G A
Sbjct: 504 PSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVA 563
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+A++ +++MI + P+ + + ILL+GL K KD EL
Sbjct: 564 EALDYFQEMIDNGVIPDHITYSILLEGL--------KKSKDLHEL 600
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I L R+ +++EA ++ ++ PD Y+ +I G K G +A +
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+YE M + + + L+ GL
Sbjct: 423 LYEVMAGDGCDADVVTYSTLIDGLC 447
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 12/161 (7%)
Query: 64 SLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE-LERQEET 122
L+R KL ALF + +R D +++ + T+ +VLI+ L +
Sbjct: 158 GLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITY----------SVLIDGLCKANRV 207
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
AV++ + ++ + PD Y L+ L + K+ A +V M P+ TY
Sbjct: 208 SQAVELLESMKARGC-SPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNS 266
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ G + +DA+ + DM P + + L+ GL
Sbjct: 267 LLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 307
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + T LA+++F+ + +Q P+ Y LI AL + GK+ EA ++ + +
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELER 663
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD TY ++I ++ G A N MIK+ P + +L+KGL LL
Sbjct: 664 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD 723
Query: 231 KVKKDFEELFP 241
+ ++ P
Sbjct: 724 QRLAALPDVVP 734
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P+ Y LI L + + A ++ + M +E +FP+ TYT +I G K+GS
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEE 251
+ A+ ++ MI+ P L + L++ L KV ++ E LF E+H P E
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQ----EGKV-EEAENLFAELERHGLIPDEI 671
Query: 252 IFGKL 256
+ K+
Sbjct: 672 TYVKM 676
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LR+ A+LI L R T + + + + QP+ IY +I AL + G + +A
Sbjct: 176 LRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG-VQPNLLIYNAVINALCKDGNVADA 234
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ + + + ++ PD+ TYT +I G + A+ ++ M K P + + L+ G
Sbjct: 235 ETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 294
Query: 222 L 222
L
Sbjct: 295 L 295
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I+ R ++ A+QV+ M KE P++ TY+ +I G G +A ++
Sbjct: 248 PDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDL 307
Query: 200 YEDMI 204
+MI
Sbjct: 308 IREMI 312
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +G A+++ + MR PD +YTE+I GF K A ++ +M+
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522
Query: 205 KSPDPPEELPFRILLKG 221
P E+ + L+ G
Sbjct: 523 DDGLCPNEVTYTALIDG 539
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ A V M + P+ TY E+I+G+ G P AM +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M++ + + ++KG
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKG 469
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++ D++R + +P+ + ++ + + G+M +A +V++ M KE L PD
Sbjct: 204 RAGEVDRAERLVDMMR-EGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDG 262
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+Y ++ G+ K G +A++++ +M + P+ + F L+
Sbjct: 263 VSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLI 304
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L+ A R G+++ A ++ + MR+ L P+ T+ V+ G K G DA +
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKV 249
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M+K P+ + + L+ G
Sbjct: 250 FDEMVKEGLAPDGVSYNTLVGG 271
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 51/88 (57%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ PDA Y LI L ++ +A ++++M L PD TYT +I G K+G+
Sbjct: 430 ENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVE 489
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A++++++M+K+ P+ + + +L+ GL
Sbjct: 490 RALSLHDEMVKAGVLPDVVTYSVLINGL 517
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
++ +LAV+ +Q QP Y LI G+M+EA ++ M + + PD T
Sbjct: 349 DDALLAVREM----RQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVT 404
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
Y+ ++ + K+G A + + M+++ P+ + + L++ L
Sbjct: 405 YSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLC 448
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y ++ A + G + A Q+ + M + + PD+ TY+ +IR ++ DA
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHV 458
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++++MI P+E+ + L+ G
Sbjct: 459 LFKNMISLGLQPDEVTYTSLIDG 481
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V + + R E+ A K+FD + K+ PD Y L+ + G +EA+ V+ M
Sbjct: 233 VVNGICKAGRMED---ARKVFDEMVKEGL-APDGVSYNTLVGGYCKVGCSHEALSVFAEM 288
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ + PD T+T +I K G+ A+ + +M + E+ F L+ G L
Sbjct: 289 TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFL 348
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 1/113 (0%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D P+ Y Y L+ AL G EA+ V MR P++ TY ++ F + G
Sbjct: 150 SDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVD 209
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
A + + M + P + F ++ G+ + +K F+E+ E A D
Sbjct: 210 RAERLVDMMREGGLKPNLVTFNSVVNGICKAGRME-DARKVFDEMVKEGLAPD 261
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 125 AVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+ +F ++ RK PD + LI + + G + A+ + MR+ L + T+T +
Sbjct: 281 ALSVFAEMTRK--GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTAL 338
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
I GF K G DA+ +M + P + + L+ G
Sbjct: 339 IDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALING 376
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI + G + A+ + + M K + PD TY+ +I G K +A
Sbjct: 469 QPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQR 528
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ + P + + L++
Sbjct: 529 LLFKLYHEEPVPANIKYDALMR 550
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + T LA+++F+ + +Q P+ Y LI AL + GK+ EA ++ + +
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELER 663
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD TY ++I ++ G A N MIK+ P + +L+KGL LL
Sbjct: 664 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD 723
Query: 231 KVKKDFEELFP 241
+ ++ P
Sbjct: 724 QRLAALPDVVP 734
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P+ Y LI L + + A ++ + M +E +FP+ TYT +I G K+GS
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEE 251
+ A+ ++ MI+ P L + L++ L KV ++ E LF E+H P E
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQ----EGKV-EEAENLFAELERHGLIPDEI 671
Query: 252 IFGKL 256
+ K+
Sbjct: 672 TYVKM 676
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LR+ A+LI L R T + + + + QP+ IY +I AL + G + +A
Sbjct: 176 LRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG-VQPNLLIYNAVINALCKDGNVADA 234
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ + + + ++ PD+ TYT +I G + A+ ++ M K P + + L+ G
Sbjct: 235 ETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 294
Query: 222 L 222
L
Sbjct: 295 L 295
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I+ R ++ A+QV+ M KE P++ TY+ +I G G +A ++
Sbjct: 248 PDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDL 307
Query: 200 YEDMI 204
+MI
Sbjct: 308 IREMI 312
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +G A+++ + MR PD +YTE+I GF K A ++ +M+
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522
Query: 205 KSPDPPEELPFRILLKG 221
P E+ + L+ G
Sbjct: 523 DDGLCPNEVTYTALIDG 539
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ A V M + P+ TY E+I+G+ G P AM +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M++ + + ++KG
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKG 469
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + T LA+++F+ + +Q P+ Y LI AL + GK+ EA ++ + +
Sbjct: 775 AMIDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELER 833
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD TY ++I ++ G A N MIK+ P + +L+KGL LL
Sbjct: 834 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD 893
Query: 231 KVKKDFEELFP 241
+ ++ P
Sbjct: 894 QRLAALPDVVP 904
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P+ Y LI L + + A ++ + M +E +FP+ TYT +I G K+GS
Sbjct: 727 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 786
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEE 251
+ A+ ++ MI+ P L + L++ L KV ++ E LF E+H P E
Sbjct: 787 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQ----EGKV-EEAENLFAELERHGLIPDEI 841
Query: 252 IFGKL 256
+ K+
Sbjct: 842 TYVKM 846
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LR+ A+LI L R T + + + + QP+ IY +I AL + G + +A
Sbjct: 346 LRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG-VQPNLLIYNAVINALCKDGNVADA 404
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ + + + ++ PD+ TYT +I G + A+ ++ M K P + + L+ G
Sbjct: 405 ETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 464
Query: 222 L 222
L
Sbjct: 465 L 465
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I+ R ++ A+QV+ M KE P++ TY+ +I G G +A ++
Sbjct: 418 PDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDL 477
Query: 200 YEDMI 204
+MI
Sbjct: 478 IREMI 482
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +G A+++ + MR PD +YTE+I GF K A ++ +M+
Sbjct: 633 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 692
Query: 205 KSPDPPEELPFRILLKG 221
P E+ + L+ G
Sbjct: 693 DDGLCPNEVTYTALIDG 709
Score = 40.0 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ A V M + LF + TY E+I+G+ G P AM +
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M++ + + ++KG
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKG 639
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + T LA+++F+ + +Q P+ Y LI AL + GK+ EA ++ + +
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCL-PNLLTYSSLIRALGQEGKVEEAENLFAELER 663
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD TY ++I ++ G A N MIK+ P + +L+KGL LL
Sbjct: 664 HGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNEYLLAD 723
Query: 231 KVKKDFEELFP 241
+ ++ P
Sbjct: 724 QRLAALPDVVP 734
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P+ Y LI L + + A ++ + M +E +FP+ TYT +I G K+GS
Sbjct: 557 KRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGST 616
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEE 251
+ A+ ++ MI+ P L + L++ L KV ++ E LF E+H P E
Sbjct: 617 SLALEMFNKMIEQGCLPNLLTYSSLIRALGQ----EGKV-EEAENLFAELERHGLIPDEI 671
Query: 252 IFGKL 256
+ K+
Sbjct: 672 TYVKM 676
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LR+ A+LI L R T + + + + QP+ IY +I AL + G + +A
Sbjct: 176 LRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEG-VQPNLLIYNAVINALCKDGNVADA 234
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ + + + ++ PD+ TYT +I G + A+ ++ M K P + + L+ G
Sbjct: 235 ETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLING 294
Query: 222 L 222
L
Sbjct: 295 L 295
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I+ R ++ A+QV+ M KE P++ TY+ +I G G +A ++
Sbjct: 248 PDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDL 307
Query: 200 YEDMI 204
+MI
Sbjct: 308 IREMI 312
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +G A+++ + MR PD +YTE+I GF K A ++ +M+
Sbjct: 463 YNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMV 522
Query: 205 KSPDPPEELPFRILLKG 221
P E+ + L+ G
Sbjct: 523 DDGLCPNEVTYTALIDG 539
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L ++ A V M + P+ TY E+I+G+ G P AM +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M++ + + ++KG
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKG 469
>gi|242047058|ref|XP_002461275.1| hypothetical protein SORBIDRAFT_02g043930 [Sorghum bicolor]
gi|241924652|gb|EER97796.1| hypothetical protein SORBIDRAFT_02g043930 [Sorghum bicolor]
Length = 334
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ L R GK++EA V + M +E P TYT +++G+ G +A N+
Sbjct: 165 PDVGTFSTLVTGLCRAGKLDEAWGVLDWMLQEGCRPMVHTYTPIVQGYCCQGRIEEATNL 224
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M ++ PP + + +L++ L
Sbjct: 225 IGFMEEAGCPPNAVTYNVLIRALC 248
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+Y Y LI ALA++GKM EA+ +++ M KE TYT +I G K+ +A+ ++
Sbjct: 469 DSYCYNALIDALAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLW 528
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ MI P FR L GL
Sbjct: 529 DLMIDKGITPTTASFRALSVGLC 551
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L + T+ +F+ + K+ + + IY LI A + G +NEA+ ++E M+ E
Sbjct: 336 VIGGLCKDGRTVEGSSVFENMNKKGC-KANVAIYTALIDAYGKNGNVNEAINLFERMKGE 394
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
PD TY ++ G K G +A+ +E
Sbjct: 395 GFEPDDVTYGVIVNGLCKSGRLDEAVEYFE 424
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 47/91 (51%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ Y +I L + G+ E V+E+M K+ + YT +I + K+G+ +A+N++E
Sbjct: 331 HAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFER 390
Query: 203 MIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
M P+++ + +++ GL L V+
Sbjct: 391 MKGEGFEPDDVTYGVIVNGLCKSGRLDEAVE 421
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +P Y + L+ L + + A +V+E M + PD +Y +I+G+ K G+
Sbjct: 217 KESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNT 276
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
AM + DM K P+++ + L++
Sbjct: 277 KKAMEKFTDMEKRNLEPDKITYLTLIQAC 305
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+++ PD Y +I + G +AM+ + M K +L PD TY +I
Sbjct: 244 AERVFEVMECGK-IGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLI 302
Query: 185 RGFLKDGSPADAMNIYEDM 203
+ +G+ +++Y++M
Sbjct: 303 QACYSEGNFDSCLHLYQEM 321
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI A G + + +++ M + L Y+ VI G KDG + +
Sbjct: 292 EPDKITYLTLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSS 351
Query: 199 IYEDMIK 205
++E+M K
Sbjct: 352 VFENMNK 358
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R T A KIF + K+ P+ Y Y LI L + GK +EA + + M ++ L P
Sbjct: 635 LCRNGRTQFAFKIFHDMEKRKCL-PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAP 693
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP-LLRSKVKK 234
D T+T +I GF+ G A + M+ P + +LLKGL LL KV
Sbjct: 694 DEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAV 753
Query: 235 DFEELFP-EKHAYDPPEEIFGKL 256
E ++ H D EI L
Sbjct: 754 QHEAVYSFSPHEKDVNFEIVSNL 776
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ E IL+ +IF Q PD + Y LI+ R ++ A V++ M KE P+S
Sbjct: 257 REAELILS-QIF-----QYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNS 310
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
TY+ +I G +G +A+++ E+MI+ P
Sbjct: 311 VTYSTLINGLCNEGRVDEALDMLEEMIEKGIEP 343
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L G+ + A++++ M ++QTY E+I+G G AM +
Sbjct: 413 PNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL 472
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E M+K P + + L+ G L
Sbjct: 473 FEKMLKMGPLPTVVTYNTLINGYL 496
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + LI L++ GK+ EA + + + DL PD TYT +I G ++ + A
Sbjct: 237 QPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFG 296
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+++ M+K P + + L+ GL
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGL 320
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L++ + +EA ++ + M ++ L P+ TYT +I G ++G A I
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 647
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ DM K P + L+ GL
Sbjct: 648 FHDMEKRKCLPNLYTYSSLIYGL 670
Score = 45.1 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D++ K++ +PD + Y +L+ ++ GK+ A ++ M + L P+ +YT +I
Sbjct: 504 AARLLDLM-KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLI 562
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G KDG A+++ E M + P + ++ GL
Sbjct: 563 DGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGL 600
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI G +N A ++ + M++ PD TY E++ GF K G A
Sbjct: 483 PTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFY 542
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M++ P + + L+ G
Sbjct: 543 FQEMVECGLNPNPVSYTTLIDG 564
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y ++I L G + +AM ++E M K P TY +I G+L G+ +A + + M
Sbjct: 453 YNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMK 512
Query: 205 KSPDPPEELPFRILLKGL 222
++ P+E + L+ G
Sbjct: 513 ENGCEPDEWTYNELVSGF 530
Score = 37.7 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y Y I AL EA+++ M+K P+ QTYT +I G + G A+
Sbjct: 342 EPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIG 401
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y M+K P + + L+ L
Sbjct: 402 LYHKMLKEGLVPNTVTYNALINEL 425
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 72/154 (46%), Gaps = 18/154 (11%)
Query: 116 LERQEETILAVKIFDIIRKQD---WY--------QPDAYIYKDLIIALARTGKMNEAMQV 164
L++Q + L +F R +D WY +PD +Y ++ L++ GK +A+++
Sbjct: 299 LDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRL 358
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
M + L PD+ Y +I+G+ G +A +++ ++ K+ + IL+ G
Sbjct: 359 LNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICG--- 415
Query: 225 HPLLRSKVKKDFEELFP--EKHAYDPPEEIFGKL 256
+ RS + D +++F EKH P F L
Sbjct: 416 --MCRSGLVGDAQQIFNEMEKHGCYPSVVTFNAL 447
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI G ++EA + + K D F + TYT +I G + G DA I
Sbjct: 369 PDTHCYNALIKGYCDLGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQI 428
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M K P + F L+ G
Sbjct: 429 FNEMEKHGCYPSVVTFNALIDGFC 452
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 76 ALFVIL--GLKRFKDDEEKLQKFIKTHVLRLL--KMDIVAVLIELERQEETILAVKIFDI 131
A F IL G+ + + LQ F + R+L K+ ++ L + ++ +A ++F I
Sbjct: 197 ATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLF-I 255
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
K PD+ Y L+ + G+++EA+ + + K+ D Q Y+ +I G +
Sbjct: 256 AMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRAR 315
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEE--LFPEKHAYD 247
DA Y M + P+ + + I++KGL + ++ + E L P+ H Y+
Sbjct: 316 RFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYN 375
Query: 248 P 248
Sbjct: 376 A 376
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
VL + R+E +LA+ I++ + K + P+ + LI + ++GK A+Q+++ M +
Sbjct: 166 TVLHVMVRKEVVLLALGIYNRMLKLNCL-PNIATFSILIDGMCKSGKTQNALQMFDEMTQ 224
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TYT +I G + A ++ M P+ + + LL G
Sbjct: 225 RRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALLHGFC 277
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I K D + A Y LI + R+G + +A Q++ M K +P T+ +I GF K G
Sbjct: 397 ISKNDCFSS-ACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAG 455
Query: 192 SPADAMNIYEDMIKSPDPP 210
+ A ++ M +P
Sbjct: 456 NIEKAQLLFYKMEIGRNPS 474
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW-ESMRKED 172
+L R +E + +K F+ +D Y D Y LI L R + +A QVW M + +
Sbjct: 277 CKLGRVDEALGLLKYFE----KDRYVLDKQGYSCLIDGLFRARRFEDA-QVWYRKMTEHN 331
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ PD YT +++G K G DA+ + +M + P+ + L+KG LL
Sbjct: 332 IKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLL 387
>gi|452825793|gb|EME32788.1| mitochondrial protein translocase, MPT family [Galdieria
sulphuraria]
Length = 821
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 7/151 (4%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A LI+ ++ E A+K+F +++ + +P+ Y Y LI A R G + A+ ++E M
Sbjct: 427 ATLIDAFSKRMEPERALKLFQEMKEAN-VKPNNYCYSSLISAFCRAGYVERALAIFEEMT 485
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL--KGLLPHPL 227
E + PD + +I GF K A IY+ M K P+ + F L+ G + +
Sbjct: 486 HERIVPDVFAFNALIDGFGKLRQVDKAFEIYDRMRKLQIQPDRITFNALISASGKAKNSI 545
Query: 228 LRSKVKKDFEELF---PEKHAYDPPEEIFGK 255
+ D E++ P++H+Y+ + GK
Sbjct: 546 RALEAMGDMTEIYGLTPDRHSYNALIDACGK 576
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+AV++++ + + ++PD Y LI L +G N A+ V++ M + P+ TY +
Sbjct: 181 VAVELYNEMVRSG-HEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTI 239
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I KD DAM+ +M+ PP+ + + ++ GL
Sbjct: 240 IDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLC 279
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+I+ + PD + Y LI + +M++A + M + L P++ TY ++
Sbjct: 497 ARKVFEIMVGKGC-APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIM 555
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+G G DA +++ M S P + + ILL GL H L +K
Sbjct: 556 KGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALK 604
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y ++ L G++NEA ++++ M + PD TY +I KD DA +
Sbjct: 266 PDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADF 325
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M+ PP+ + + +L GL
Sbjct: 326 LSEMVDQGIPPDVVTYTTILHGLC 349
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + +Q +PD Y +I +L + +N+AM+ M + P++ TY+ ++
Sbjct: 357 AIRLFKKM-EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
GF G +A ++++M+ P L F IL+ GL ++ S+ + FE +
Sbjct: 416 HGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMV-SEARWVFETM 469
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
Y LI L R ++ A+ VW M K + PD T+T +I G +G A+ +Y
Sbjct: 128 VYSLNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYN 187
Query: 202 DMIKSPDPPEELPFRILLKGLL 223
+M++S P+ + + L+ GL
Sbjct: 188 EMVRSGHEPDVISYNTLINGLC 209
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L G++NEA+++++ M ++ PD Y +I KD DAM
Sbjct: 336 PDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEF 395
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M+ PP + + +L G
Sbjct: 396 LSEMVDRGIPPNAVTYSTILHGFC 419
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 20/219 (9%)
Query: 17 IVLQNLTKNPS---KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIG 73
I TKNPS KN F + + VD + + + PR S+ K +G
Sbjct: 46 ITTSTFTKNPSLPKKNGGFASNSSNTISVD----DALASFYRMARMNPRPSIVEFGKFLG 101
Query: 74 KEALFVILGLKRFKDD---EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFD 130
I +K++ ++ F TH + L + I L R AV ++
Sbjct: 102 S-----IAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINC----LCRLNHVDFAVSVWG 152
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
+ K QPD + LI + GK+ A++++ M + PD +Y +I G
Sbjct: 153 KMFKLG-IQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNS 211
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
G+ A+++++ M ++ P + + ++ L L+
Sbjct: 212 GNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVN 250
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L T +AV +F + +Q+ +P+ Y +I +L + +N+AM M + P
Sbjct: 208 LCNSGNTNMAVHVFKKM-EQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPP 266
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
D+ TY ++ G G +A +++ M ++ P+ + + I++ L
Sbjct: 267 DAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSL 313
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L + G ++EA+++++SM+++ L PD YT +I G G A +
Sbjct: 581 PTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGL 640
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ + P + +++KGLL L
Sbjct: 641 FSKLSADGIQPPGRTYNVMIKGLLKEGL 668
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ L + G ++EA V+E+M ++ + P+ TY ++ G+ +A +
Sbjct: 441 PNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKV 500
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E M+ P+ + IL+ G
Sbjct: 501 FEIMVGKGCAPDLHSYNILING 522
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 45/96 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ +PD Y +I +L + +N+A M + + PD TYT ++ G G
Sbjct: 295 EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQL 354
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+A+ +++ M + P+ + + ++ L L+
Sbjct: 355 NEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVN 390
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDA 142
+ R D +E +K + +L L M +L L + A+K+F ++++ +PD
Sbjct: 561 VGRLLDAQELFKKMCSSGMLPTL-MTYSILLNGLCKHGHLDEALKLFKSMKEKKL-EPDI 618
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+Y LI + GK+ A ++ + + + P +TY +I+G LK+G +A ++
Sbjct: 619 ILYTILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELF 676
>gi|168022838|ref|XP_001763946.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684951|gb|EDQ71350.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 727
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ + PD + Y + A + G M +A + E M+++DL P+ QTYT +I G+ P
Sbjct: 573 RQEGFTPDIHSYTSFVNACCKAGDMQKATETIEEMKQQDLQPNLQTYTILIHGWTSVSHP 632
Query: 194 ADAMNIYEDMIKS---PDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
A+ Y++M + PD P L + I+ L + R V+ ++ E
Sbjct: 633 EKALICYDEMKAAGLIPDKP--LYYCIVTSLLSKAAIARETVRNGVLQVTSE 682
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 48/84 (57%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI + GKM +A++ + M+ + + + TY+ ++ G+++ G A+A ++
Sbjct: 299 PTAVTYGCLINLYTKLGKMMKALEFCKEMKAQGITLNRNTYSMLVDGYVQLGDFANAFSV 358
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+EDM ++ P+ + + ILLK
Sbjct: 359 FEDMSEAGIEPDWVTYNILLKAFC 382
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ YI+ L+ A+ G M EA + + MR+E PD +YT + K G A
Sbjct: 545 NNYIFNTLLDGWAQRGDMWEAYGIMQKMRQEGFTPDIHSYTSFVNACCKAGDMQKATETI 604
Query: 201 EDMIKSPDPPEELPFRILLKGL--LPHP 226
E+M + P + IL+ G + HP
Sbjct: 605 EEMKQQDLQPNLQTYTILIHGWTSVSHP 632
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ A ++ +M A+Q+ M+ P QTY +I GF+K G A
Sbjct: 368 EPDWVTYNILLKAFCKSRQMTRAIQLLGRMKTRGCSPTIQTYITIIDGFMKTGDVRMAYK 427
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+M + P + +++ L+
Sbjct: 428 TVSEMKLAGCRPNATTYNVIMHNLV 452
>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Glycine max]
Length = 768
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + Y +LI A ++T +M +A++++ M+ PD+ Y ++ G K +A
Sbjct: 281 HQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEAC 340
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++E M++ P + IL+ GL
Sbjct: 341 QLFEKMVQEGVRPSCWTYNILIHGLF 366
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI AL R GK+++A+ V+E + PD TYT +I+ K DA+ I
Sbjct: 248 PDLCTYNSLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIRI 307
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M + P+ L + LL G
Sbjct: 308 FNQMQSNGFRPDTLAYNSLLDG 329
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA + D + +Q Y D +Y LI AL + +++E +++E MR + PD TY +
Sbjct: 650 LASAVLDRLLRQGGYL-DIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTL 708
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
I K G DA + M+ + P +
Sbjct: 709 IEVHSKAGRLKDAYKFLKMMLDAGCSPNHV 738
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +P + Y LI L R G+ A ++ ++K+ F D TY+ V+ K+G
Sbjct: 348 QEGVRPSCWTYNILIHGLFRNGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLE 407
Query: 195 DAMNIYEDM 203
+A+ + E+M
Sbjct: 408 EALQLVEEM 416
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+ Y L+ L + G++ EA + + M L P+ Y ++ GF+K+G A+A +I
Sbjct: 313 PDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAEAFDI 372
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+MI + P ++ + L++GL
Sbjct: 373 LNEMISAGVQPNKIMYDNLIRGL 395
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + D + K+ +P Y LI R+G ++ A V++S+ + L P+ TYT +I
Sbjct: 684 AVGLLDEMAKEG-LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALI 742
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K+G DA ++Y+DM+ P+ + +L G
Sbjct: 743 DGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATG 779
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 18/141 (12%)
Query: 88 DDEEKLQKFIKTHVLRLLKMD--IVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYI 144
+D EK+ +++ + K D I ++I L R E +A + + K PD +I
Sbjct: 609 NDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLV-PDLHI 667
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L + M +A+ + + M KE L P Y +I GF + G + A N+++
Sbjct: 668 YSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDS-- 725
Query: 205 KSPDPPEELPFRILLKGLLPH 225
IL KGLLP+
Sbjct: 726 ------------ILAKGLLPN 734
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI +T + +A Q+ + M L P++ TYT+++ G+ K +I
Sbjct: 558 PDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSI 617
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M+ S D P+ + I+++ L
Sbjct: 618 LQSMLGSGDKPDNHIYGIVIRNL 640
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L+ G++ EA + + ++K L PD TY+ +I G+ K + A +
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M+ S P + LL+G
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEG 604
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y + A + + A +V+E MR+ D + TY +I G + G+ +A
Sbjct: 243 PDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 302
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M+ P+ + L+ GL
Sbjct: 303 KEEMVDYGLSPDAFTYGALMNGL 325
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+AY Y +I L + G+ EA + E M E L P++ Y +I G K+G + A
Sbjct: 453 PNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACES 512
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M K+ P+ + L+KGL
Sbjct: 513 LENMTKANVLPDLFCYNSLIKGL 535
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A++Y LII ++ G ++ A + E+M K ++ PD Y +I+G G +A
Sbjct: 487 KPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEE 546
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
Y + K P+E + L+ G
Sbjct: 547 YYAQVQKRGLVPDEFTYSGLIHG 569
Score = 45.1 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y L+ + GK EA + M + P+ Y +IRG K G A
Sbjct: 347 KPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 406
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ +MIK P+ + L++G H
Sbjct: 407 LLNEMIKVGHRPDTFTYHPLMQGHFQH 433
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+ +R++D + Y +I L R+G + EA E M L PD+ TY ++
Sbjct: 264 AKKVFEEMRRRDCAMNEV-TYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALM 322
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A + ++M S P + + L+ G +
Sbjct: 323 NGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFM 361
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD + Y L+ + + A ++ MR + P++ TY +I G ++G +A
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAG 475
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
N+ E+MI P + L+ G
Sbjct: 476 NLLEEMISEGLKPNAFMYAPLIIG 499
Score = 40.8 bits (94), Expect = 0.52, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A + FDI+ + QP+ +Y +LI L + G++ A ++ M K PD+ TY
Sbjct: 366 AAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHP 425
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++G + A + +M S P + I++ GL
Sbjct: 426 LMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGL 465
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + PDA Y +I L + G++ E + + MR PD+ TY +I
Sbjct: 205 ARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF+K A +Y M++S + + I+L GL
Sbjct: 265 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 129 FDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
F +++K D + P Y L+ L + G+++EAM V E M ++ P +TYT VI G
Sbjct: 62 FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG 121
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K G +A I+ DM+ + P+ + L+KGL
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLC 158
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y I L + ++++A Q+ + M ++ P + TYT ++ G LK G +AM
Sbjct: 39 EPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMA 98
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ E M++ + P + +++ GL
Sbjct: 99 VLEQMVEKGNSPTLKTYTVVIDGL 122
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + G++ EA QV++ E F PD+ TYT +I G K G +
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +M P+ + + L+ G + ++
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMI 273
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWE--SMRKE--DLFPDSQTYTEVIRGFLKDG 191
+ +PDA++Y LI L ++GK EA +++ + RK PD TYT +I G K G
Sbjct: 141 NGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAG 200
Query: 192 SPADAMNIYED-MIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPE 250
+A +++D ++ P+ + + ++ GL + ++ F E+ Y+P
Sbjct: 201 RILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCER-FHEM--RNRGYEPDA 257
Query: 251 EIFGKL 256
+ L
Sbjct: 258 VTYAAL 263
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y +I L++ G++ EA +++ M PD+ YT +I+G K G P +A
Sbjct: 109 SPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYA 168
Query: 199 IYEDMIK----SPDPPEELPFRILLKGLL 223
+Y++ + P+ + + L+ GL
Sbjct: 169 LYKEANARKHHATAVPDVVTYTSLIDGLC 197
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 40/79 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y ++ L + G++ EA + +M + TY+ ++ GF +G+ + A+ ++ M+
Sbjct: 295 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 354
Query: 205 KSPDPPEELPFRILLKGLL 223
P + + I+++GL
Sbjct: 355 DRGCEPNLVSYNIIIRGLC 373
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD-GSPADAM 197
+P+ Y +I L R GK+ +A +E + + L PD T+ + G + + +D +
Sbjct: 359 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGV 418
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++E M+ P + IL+ G+
Sbjct: 419 ELFESMVSQGTSPNLHSYSILMDGIC 444
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPDA + LI L GK+ EA+ +++ M E P+ TY +I G KD +A
Sbjct: 111 HQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAF 170
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
NI+ +MI P + + L+ GL
Sbjct: 171 NIFSEMITKGISPNIVTYNSLIHGL 195
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+ E +AVK+FD + +D + Y LI + +++AM ++E M +++L P++
Sbjct: 268 RNEVDVAVKVFDTMVHKDCVA-NVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTV 326
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
TY +I G G DA++++ +M+ P+ + +R L
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTL 366
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + I +W PD IY ++ + R G++ +A ++ ++ + L P+ TY +I
Sbjct: 379 AMALLKAIEGSNW-DPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMI 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A+A ++ +M K+ P + + ++ +G L
Sbjct: 438 HGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFL 476
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + + P+ Y LI + +M++AM + E M + L D+ TY +I
Sbjct: 762 AVKVFDTMVHKGCV-PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLI 820
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G G A+ ++ +M+ S P+ + +RILL L
Sbjct: 821 HGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYL 858
Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L L + +++AM + +++ + PD Q YT ++ G + G DA ++
Sbjct: 358 PDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDL 417
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ ++ P + I++ GL LL ++ K F E+
Sbjct: 418 FSNLSSKGLQPNVWTYNIMIHGLCKQGLL-AEASKLFSEM 456
Score = 44.3 bits (103), Expect = 0.054, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y +I L + G + EA +++ M K P+ TY + RGFL++ +
Sbjct: 427 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIE 486
Query: 199 IYEDMI 204
+ E+M+
Sbjct: 487 LLEEML 492
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I +L +++ A + K PD+ T+T +IRG +G +A+++
Sbjct: 78 PDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 137
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ MI P + + L+ GL
Sbjct: 138 FDKMIGEGFQPNVVTYGTLINGL 160
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ ++K PD Y Y L+ + R G +EA + +M + PD ++ ++
Sbjct: 495 AVDLFNEMKKLGC-NPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIIL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF + G P A+ ++ M S P+ + + +L G L + + K +E+ +
Sbjct: 554 NGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVL-GCLSRAGMFEEAAKLMKEMNSKGF 612
Query: 245 AYD 247
YD
Sbjct: 613 EYD 615
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ + +L R E+ + V+ K+ Y Y +LI + + GK+ EA ++ +M
Sbjct: 271 ILGIYFKLGRVEKALGLVQEM----KEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNM 326
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KE PD +I K G ADA+ ++E+M P + + ++K L
Sbjct: 327 LKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKALF 381
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 67/131 (51%), Gaps = 5/131 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++A +L R + A+ +FD + K++ P A IY ++ + G++ +A+ + + M
Sbjct: 236 LIAAFGKLGRDDS---AISLFDEM-KENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEM 291
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+++ TYTE+I+G K G +A +I+ +M+K P+ + L+ L L
Sbjct: 292 KEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRL 351
Query: 229 RSKVKKDFEEL 239
+K FEE+
Sbjct: 352 ADAIKL-FEEM 361
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F +R+ Y A +Y +I L + G+++EA+ ++ M+K PD Y ++
Sbjct: 460 ANELFQELRENCGYS-SARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALM 518
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G ++ G +A ++ M ++ P+ I+L G
Sbjct: 519 SGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGF 556
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD YI+ LI + GK+++AM ++ MR++ L PD+ TY V+ G DAM
Sbjct: 375 QPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMA 434
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +I P+ + FR L+ GL
Sbjct: 435 QFGRLISEGLTPDAVVFRNLIHGL 458
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IFD++ + D Q D Y LI GK++EA ++ E M + + P+ TY +I
Sbjct: 502 AKNIFDLMVRVD-VQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMI 560
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K+G DA +++ M P + + +L+GL
Sbjct: 561 NGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLF 599
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D +PD + Y L+ L + G+ EA ++++SM K P+S TY ++ G+ +GS
Sbjct: 301 RDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLV 360
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHP------LLRSKVKKDFEELFPEKHAY 246
++ + M+++ P+ F IL+ H LL SK+++ + L P+ Y
Sbjct: 361 KMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRR--QGLNPDTVTY 416
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ L+ RQ +T A +FD + Q PD Y +I AL++ M++A V M
Sbjct: 208 VINGLLREGRQLDT--AYHLFDQMLDQG-LSPDVVTYNSIISALSKARAMDKAAVVLVRM 264
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
K P+ T+ ++ G+ G P DA+ +++ M + P+ + L+ G L
Sbjct: 265 VKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLM-GYLCKNGR 323
Query: 229 RSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ +K F+ + K + P +G L
Sbjct: 324 SMEARKIFDSMV--KRGHKPNSATYGTL 349
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + L+ +GK N+A+ V++ M ++ + PD TY ++ K+G +A I
Sbjct: 271 PNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKI 330
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+K P + LL G
Sbjct: 331 FDSMVKRGHKPNSATYGTLLHG 352
Score = 38.5 bits (88), Expect = 3.0, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 42/87 (48%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +P+ Y +I + G++ +A ++ M + + P TY+ +++G + A
Sbjct: 547 DGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAA 606
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A +Y MIKS + + I+L GL
Sbjct: 607 AKELYLWMIKSGIKFDIGTYNIILLGL 633
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + Q +PD Y LI + R G +++A +W+ M ++FP+ TY+ +I
Sbjct: 105 ALQLFDTMLNQRL-RPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILI 163
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G DA ++MI P + + ++KG
Sbjct: 164 DSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 200
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I R G M++A++V + M PD TY ++ G K+ DA +
Sbjct: 14 PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + PP+ F L+ G
Sbjct: 74 LNEMRERGVPPDLCTFTTLIHG 95
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 91 EKLQKFIKTHVLRLLKMDIVA--VLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKD 147
K QKF++ ++ + D++ LI +E+ + A K+ +++ K+ QPD Y
Sbjct: 208 SKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK-VQPDVVTYNM 266
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI + G + EA ++E M + + PD TY +I G + G+ +A ++++M++
Sbjct: 267 LINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326
Query: 208 DPPEE 212
P++
Sbjct: 327 FAPDD 331
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI GK+++A+Q++++M + L PD TY +I G + G A ++
Sbjct: 84 PDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDL 143
Query: 200 YEDMIKSPDPPEELPFRILL 219
++DM P + + IL+
Sbjct: 144 WDDMHSREIFPNHVTYSILI 163
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + KM++A ++ M KE + PD TY +I GF G+ +A
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 282
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I+E M P+ + ++ G
Sbjct: 283 IFEKMCAKGIEPDRYTYMSMING 305
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M MR L PD YT VI GF + G +DA+ + ++M+ P+ + + LL G
Sbjct: 1 MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60
Query: 222 LL 223
L
Sbjct: 61 LC 62
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I R+G +++ + + M + PD TY +I G++K+ DA +
Sbjct: 189 PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKL 248
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
M K P+ + + +L+ G H
Sbjct: 249 LNMMEKEKVQPDVVTYNMLINGFSVH 274
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + ++ +A + MR+ + PD T+T +I G+ +G A+ +
Sbjct: 49 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 108
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P+ + + L+ G+
Sbjct: 109 FDTMLNQRLRPDIVTYNTLIDGMC 132
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + +D +PD +Y L+ L R G + A+QV M +E PD TY +I
Sbjct: 369 ALELFNEAQAKDL-KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIII 427
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K G+ +DA + D I P+ F L+ G
Sbjct: 428 NGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDG 464
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 16/138 (11%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L E R EE + V+ R + PD Y L+ L + K+ EA Q M +
Sbjct: 256 LCEDGRLEEAVALVE-----RMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQG 310
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
PD TY +I G+ K G +A + +D + P+ + + L+ GL
Sbjct: 311 CIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLC--------A 362
Query: 233 KKDFE---ELFPEKHAYD 247
+ D E ELF E A D
Sbjct: 363 EGDIERALELFNEAQAKD 380
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + D I K Y PD + + LI + K++ A+Q+ E M + PD TY V+
Sbjct: 440 AVVMNDAIVK--GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVL 497
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G + +E+MI P + + IL++
Sbjct: 498 NGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFC 536
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y LI L G + A++++ + +DL PD Y +++G + G A+
Sbjct: 346 FVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHAL 405
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ +M++ P+ + I++ GL
Sbjct: 406 QVMNEMVEEGCHPDIWTYNIIINGLC 431
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQ 135
+I GL D E L+ F + + LK D+V +++ L RQ + A+++ + + ++
Sbjct: 356 LINGLCAEGDIERALELFNEAQA-KDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEE 414
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ PD + Y +I L + G +++A V + PD T+ +I G+ K
Sbjct: 415 GCH-PDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDS 473
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAYDPPE 250
A+ + E M P+ + + +L GL + +V + FEE+ P Y+
Sbjct: 474 ALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAK-EVNETFEEMILKGCRPNAITYNILI 532
Query: 251 EIFGKL 256
E F K+
Sbjct: 533 ENFCKI 538
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I ++G + EA ++ + + PD TY +I G +G A+ +
Sbjct: 313 PDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALEL 372
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + P+ + + L+KGL L+
Sbjct: 373 FNEAQAKDLKPDLVVYNSLVKGLCRQGLI 401
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 36/84 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L + GK E + +E M + P++ TY +I F K +A +
Sbjct: 488 PDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGV 547
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M + P+ + F L+ G
Sbjct: 548 IVRMCQDGLVPDAVSFNTLIHGFC 571
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ ++K PD Y Y L+ + R G +EA + +M + PD ++ ++
Sbjct: 495 AVDLFNEMKKLGC-NPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIIL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF + G P A+ ++ M S P+ + + +L G L + + K +E+ +
Sbjct: 554 NGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVL-GCLSRAGMFEEAAKLMKEMNSKGF 612
Query: 245 AYD 247
YD
Sbjct: 613 EYD 615
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ + +L R E+ + V+ K+ Y Y +LI + + GK+ EA ++ +M
Sbjct: 271 ILGIYFKLGRVEKALGLVQEM----KEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNM 326
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KE PD +I K G ADA+ ++E+M P + + ++K L
Sbjct: 327 LKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKAL 380
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K++ P A IY ++ + G++ +A+ + + M+++ TYTE+I
Sbjct: 249 AISLFDEM-KENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELI 307
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
+G K G +A +I+ +M+K P+
Sbjct: 308 KGVGKAGKVEEAYSIFMNMLKEGCKPD 334
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F +R+ Y A +Y +I L + G+++EA+ ++ M+K PD Y ++
Sbjct: 460 ANELFQELRENCGYS-SARVYAVMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALM 518
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G ++ G +A ++ M ++ P+ I+L G
Sbjct: 519 SGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNG 555
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +Y LI +L R GK+ +A QV + M + L P+ TY +I K+GS +AM+
Sbjct: 215 EPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMS 274
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +M++ + + + L+ GL
Sbjct: 275 LRNNMLEKGVALDAVTYNTLITGL 298
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L R+ + A ++ D + ++ +P+ Y LI ++ + G + EAM + +M ++ +
Sbjct: 227 SLCREGKVKKATQVMDKMMERGL-EPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVA 285
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD--PPEELPFRILLKGLLPHPLLR 229
D+ TY +I G +AM + E+MI P + F ++ GL +R
Sbjct: 286 LDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMR 342
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/99 (19%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K +++R+ + +P+ +Y L+ + G+ +V+E M + PD YT +I
Sbjct: 166 KAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLI 225
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++G A + + M++ P + + +L+ +
Sbjct: 226 DSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMC 264
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++A L E E+ A FD + K + D Y +I R A + + M
Sbjct: 436 LLAALCEQGMMEQ---ARNFFDEMHKN--CKLDVVAYSTMIHGACRLRDRKSAEEFLKHM 490
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
E L PDS TY+ +I F G A + + M S P+ F L+KG
Sbjct: 491 LDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKG 543
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D++ ++ + + LI L R K+ +AM++ + M L PDS TY+ +I
Sbjct: 344 AFQVRDMM-AENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILI 402
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
GF K A ++ M + PE + + LL L ++ + + F+E+
Sbjct: 403 NGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMME-QARNFFDEM 456
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ +PD Y LI L + K +A ++ E M P+ TY V+ G K G
Sbjct: 326 RRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKM 385
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +YE M+KS P+ + + I++ GL +L S VK
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R +T LA ++F + K++ +P+ Y LI L+R G+++EA++V R +L
Sbjct: 133 LCRSNKTKLAREVFQEM-KRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPT 191
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D T T ++ G K DA+ E+M + P E+ + L+ G H L +V +
Sbjct: 192 DVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGEL-DRVIRF 250
Query: 236 FEE 238
FEE
Sbjct: 251 FEE 253
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q PD Y LI AR G+ + ++++ E MR+ + PD TY+ +I K+
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKF 350
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E M + PP + + ++ GL
Sbjct: 351 QDAFRLLELMEAAGSPPNVVTYNSVMDGLC 380
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRK-QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A + +++R+ Y P +IY +I L R ++ +A +V E M +E + P+ TYT
Sbjct: 69 MANQALELVRELSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTI 128
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ G + A ++++M ++ P + + L++ L
Sbjct: 129 LLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHL 168
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ L ++GKM+E +V+E M K PD TY+ ++ G K G A+ +
Sbjct: 367 PNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKL 426
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E + S + P+ + +++ L
Sbjct: 427 FELIKSSREGPDAAAYSMVITSLC 450
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
++ F+ + + +A Y + AL + G ++ A + E +R+ + PD TY+ +I
Sbjct: 248 IRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLIN 307
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F + G ++ + EDM ++ P+ + + L+ L
Sbjct: 308 TFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLC 345
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + + P+ Y LI + ++++AM ++ M +++L PD+ TY+ +I
Sbjct: 379 AVKVFDTMVCKGC-MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G DA+ ++ +M+ P + +RILL
Sbjct: 438 HGLCHVERLQDAIALFHEMVACSQIPNLVTYRILL 472
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + LI + GK+ EA+ +++ M E PD TY +I G K G+ + A+
Sbjct: 127 HQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAI 186
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M++ P + ++ L
Sbjct: 187 RLLGSMVQKNCQPNVFAYNTIIDSLC 212
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + ++ A V + K PD+ T+T +IRG +G +A+++
Sbjct: 94 PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHL 153
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFEELFPEKHAYDP 248
++ MI P+ + + L+ GL LL S V+K+ + P AY+
Sbjct: 154 FDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQ---PNVFAYNT 206
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + ++ AL + GK+ EA V + M + + P+ TYT ++ G +A+ +
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ P + + L+ G
Sbjct: 329 FDTMVCKGCMPNVISYNTLING 350
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI AL + + M + PD ++ V+ K+G +A +
Sbjct: 233 SPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHD 292
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + MI+ P + + L+ G H LL
Sbjct: 293 VVDKMIQRGVEPNVVTYTALMDG---HCLL 319
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++++A ++++M K L PD TYT +I G K+G+ A+++
Sbjct: 468 PDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSL 527
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ M+K+ P+ + + +L+ GL
Sbjct: 528 HDKMVKAGVLPDVVTYSVLINGL 550
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A ++ ++R + +P+ + ++ + + GKM +A +V++ M +E L PD
Sbjct: 237 RAGEVDGAERLVGMMR-EGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDG 295
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+Y ++ G+ K G +A++++ +M + P+ + F L+
Sbjct: 296 VSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 337
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ A R G+++ A ++ MR+ L P+ T+ ++ G K G DA +
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKV 282
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M++ P+ + + L+ G
Sbjct: 283 FDEMVREGLAPDGVSYNTLVGG 304
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
++ +LAV+ KQ +P Y LI G+M+EA ++ M + L PD T
Sbjct: 382 DDALLAVRGM----KQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 437
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
Y+ +I + K+ A + + M++ P+ + + L++ L
Sbjct: 438 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLC 481
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AVL+ L T A + FD + D P+ Y Y L+ AL G EA+ + MR
Sbjct: 161 AVLLALSDASLTS-ARRFFDSML-SDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRG 218
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
P+ TY ++ F + G A + M + P + F ++ G+ +
Sbjct: 219 AGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKME- 277
Query: 231 KVKKDFEELFPEKHAYD 247
+K F+E+ E A D
Sbjct: 278 DARKVFDEMVREGLAPD 294
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A + + A ++ + M ++ + PD+ TY+ +IR + +DA
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHV 491
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++++MIK P+E + L+ G
Sbjct: 492 LFKNMIKLGLQPDEFTYTSLIDG 514
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ PD Y L+ + G +EA+ V+ M ++ + PD T+T +I
Sbjct: 279 ARKVFDEMVREGL-APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 337
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K G+ A+ + M + E+ F L+ G
Sbjct: 338 HVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFC 376
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD + LI + + G + A+ + MR+ L + T+T +I GF K G
Sbjct: 323 QKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 382
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DA+ M + P + + L+ G
Sbjct: 383 DALLAVRGMKQCRIKPSVVCYNALING 409
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
QPD + Y LI + G + A+ + + M K + PD TY+ +I G K +A
Sbjct: 502 QPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEA 559
>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
diamantinensis]
Length = 284
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A ++++ M + L P+ T+T +I G K G AM
Sbjct: 154 QPDVYSYSVLINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAME 213
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 214 IYKRMLSQSLLPDLITYNTLIYGLC 238
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 190 PNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDL 249
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 250 IDEMGMKGLKPDKITYTTLIDGCC 273
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 210 LAMEIYKRMLSQSLL-PDLITYNTLIYGLCKKGDLKQANDLIDEMGMKGLKPDKITYTTL 268
Query: 184 IRGFLKDGS 192
I G K+G+
Sbjct: 269 IDGCCKEGN 277
>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Glycine max]
Length = 529
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI + G++ EA ++W+ M ++ P++ TY +++GF K G +A+ + E+M+
Sbjct: 398 YNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIRVLEEMV 457
Query: 205 KSPDPPEELPFRILLKGL 222
+S P + F IL+ G+
Sbjct: 458 ESGCLPNKSTFSILVDGI 475
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F I + W PD Y L+ R GK+ +A+++ + M + + P TY +I
Sbjct: 240 AMRVFGEILDKGW-MPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEVTYGVMI 298
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ K P +A+N+ EDM++ KGL+P +L KV
Sbjct: 299 EAYCKGRKPGEAVNLLEDMVE--------------KGLVPSSVLCCKV 332
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ +PD Y LI L + K +A ++ E M P+ TY V+ G K G
Sbjct: 326 RRNGVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKM 385
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +YE M+KS P+ + + I++ GL +L S VK
Sbjct: 386 DEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVK 425
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R +T LA ++F + K++ +P+ Y LI L+R G+++EA++V R +L
Sbjct: 133 LCRSNKTKLAREVFQEM-KRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPT 191
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D T T ++ G K DA+ E+M + P E+ + L+ G H L +V +
Sbjct: 192 DVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGEL-DRVIRF 250
Query: 236 FEE 238
FEE
Sbjct: 251 FEE 253
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q PD Y LI AR G+ + ++++ E MR+ + PD TY+ +I K+
Sbjct: 291 RQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLCKERKF 350
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E M + PP + + ++ GL
Sbjct: 351 QDAFRLLELMEAAGSPPNVVTYNSVMDGLC 380
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRK-QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A + +++R+ Y P +IY +I L R ++ +A +V E M +E + P+ TYT
Sbjct: 69 MANQALELVRELSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTI 128
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ G + A ++++M ++ P + + L++ L
Sbjct: 129 LLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHL 168
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ L ++GKM+E +V+E M K PD TY+ ++ G K G A+ +
Sbjct: 367 PNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKL 426
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E + S + P+ + +++ L
Sbjct: 427 FELIKSSREGPDAAAYSMVITSLC 450
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 48/98 (48%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
++ F+ + + +A Y + AL + G ++ A + E +R+ + PD TY+ +I
Sbjct: 248 IRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLIN 307
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F + G ++ + EDM ++ P+ + + L+ L
Sbjct: 308 TFARAGQFDASLELLEDMRRNGVKPDVVTYSTLINVLC 345
>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD++R+Q +YQP Y LI+ L ++G+ + A Q++ +M +E L P + YT ++
Sbjct: 109 ALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALL 168
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLK 220
+ + +A ++ +M K P P+ + L+K
Sbjct: 169 AAYCRSNMIDEAFSVLNEMKKLPRCQPDVFTYSTLIK 205
>gi|222612695|gb|EEE50827.1| hypothetical protein OsJ_31237 [Oryza sativa Japonica Group]
Length = 550
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ PD Y +I L + G+M +A QV MR + + P++ TY +I G++ G
Sbjct: 316 EQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALGDN 375
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
A A ++E+M+K+ + + + L+ GL ++ KV+ EL ++ +P F
Sbjct: 376 AMAGRVHEEMVKNRVELDIVTYNALILGLCNEGKMK-KVEHLLREL--DRAKLEPNASTF 432
Query: 254 GKL 256
L
Sbjct: 433 SAL 435
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A + LI+ + A+Q+ M+K P+ TY VI F K+ A++
Sbjct: 426 EPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVISSFCKNKDLEGAVD 485
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ DM+ P++ GL
Sbjct: 486 VMGDMLGRCIAPDKALLNEFFDGL 509
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 145 YKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ LI A R G A+Q+ M +E L PD TY +I G K+G A + +M
Sbjct: 291 FNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEM 350
Query: 204 IKSPDPPEELPFRILLKG 221
P + + L+ G
Sbjct: 351 RVKGVMPNTVTYNTLIHG 368
>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Glycine max]
Length = 577
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+I+ L++++ E ++F+ ++ + ++ PD +Y +I L ++ EA ++W
Sbjct: 289 EIIYGLLKMKNSE----GFQVFNDLKDRGYF-PDRVMYTTVIKGLCEMQRLGEARKLWFE 343
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
M K+ P+ TY ++ G+ K G A+A I+EDM + + ++ GL H
Sbjct: 344 MIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHG- 402
Query: 228 LRSKVKKDFEELF 240
+ + FEE+F
Sbjct: 403 RTDEAQSLFEEMF 415
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 6/122 (4%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKI-FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
R++ ++ L E++R E A K+ F++I+K +QP+ Y Y ++ + G + EA
Sbjct: 318 RVMYTTVIKGLCEMQRLGE---ARKLWFEMIKKG--FQPNEYTYNVMMHGYCKIGDLAEA 372
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+++E MR + +Y +I G G +A +++E+M + P+ + + L+K
Sbjct: 373 RKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKA 432
Query: 222 LL 223
L
Sbjct: 433 LC 434
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 76/162 (46%), Gaps = 8/162 (4%)
Query: 94 QKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIA 151
++ +++ V+ + ++ V LI E +L K ++++++ ++ PD ++ +LI
Sbjct: 201 EQMMESGVVASINVETVGYLIMAFCAEYKVL--KGYELLKELLENGLCPDNVVFNELIRG 258
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ G+ + ++ M + PD TY E+I G LK + ++ ++ D+ P+
Sbjct: 259 FCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGLLKMKN-SEGFQVFNDLKDRGYFPD 317
Query: 212 ELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+ + ++KGL L K FE + K + P E +
Sbjct: 318 RVMYTTVIKGLCEMQRLGEARKLWFEMI---KKGFQPNEYTY 356
>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1385
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQV-WESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD++ Y LI L R GKM A+ + ++ K L P+ YT ++ G LK+G A
Sbjct: 614 FVPDSFTYTSLIAGLCRKGKMVPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAA 673
Query: 197 MNIYEDMIKSPDPPEELPFRILL 219
+ ++EDM+ P+ + F +LL
Sbjct: 674 LYMFEDMLNEGVQPDAIAFNVLL 696
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 112 VLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
VLI+ L R+ + I +RK Y P+ Y LI L + GK+ A +V+E M
Sbjct: 254 VLIDDLCRKSRSAKGYLILRRMRKNMVY-PNEITYNTLINGLVKEGKIGVATKVFEEMSL 312
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+L P+S TY +I G +G+ +A+ + + M+ P E+ + LL G+ H
Sbjct: 313 CNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTYGALLNGISKH 367
Score = 43.9 bits (102), Expect = 0.061, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 48/94 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ +++ + V E MR + + +YT +I G K+G +A+
Sbjct: 351 RPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQ 410
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ +DM+K P+ + F +L+ G L L+ ++V
Sbjct: 411 LLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRV 444
Score = 42.0 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPDA + L+ +R GKM++ + +MR L + TY ++ G+ K A
Sbjct: 686 QPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSK 745
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+Y +MI P+ L + L+ G
Sbjct: 746 LYNEMIIHGFAPDRLTWHSLILG 768
Score = 40.0 bits (92), Expect = 0.86, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L R + + + MRK ++P+ TY +I G +K+G A ++
Sbjct: 248 DVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVF 307
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M P + + L+ G
Sbjct: 308 EEMSLCNLLPNSVTYNTLIFG 328
Score = 38.1 bits (87), Expect = 3.9, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y ++ +R+G ++ A+ + + M + PDS TYT +I G + G A+
Sbjct: 579 YAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPAL 638
Query: 198 ----NIYEDMIKSPDPPEELPFRILLKGLL 223
E + SP+P + L+ GLL
Sbjct: 639 LLSGRAIEKGLLSPNPAM---YTSLVDGLL 665
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI L G+ ++A ++ +M + + P+ T++ +I F+K+G +A
Sbjct: 287 RPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y++MIK P+ + L+ G H L + K FE + FP Y+ + F
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Query: 254 GK 255
K
Sbjct: 406 CK 407
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+++ +D + P+ Y LI + ++ E M+++ M + L ++ TY +I
Sbjct: 379 AKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + G A I++ M+ PP+ + + ILL GL +
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ + + A K++D + K+ PD + Y LI +++EA ++E M +D FP+
Sbjct: 337 KEGKLVEAEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 395
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY +I+GF K + M ++ +M + + + L++GL
Sbjct: 396 VTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A + GK+ EA ++++ M K + PD TY+ +I GF +A +
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++E MI P + + L+KG ++K ++ ELF E
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKG-----FCKAKRVEEGMELFRE 420
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A KIF + D PD Y L+ L + GK+ +A+ V+E ++K + PD TY +
Sbjct: 448 MAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
I G K G D +++ + P + + ++ G R +K++ + LF E
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG-----FCRKGLKEEADALFRE 560
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 113 LIELERQEETILAVKIFDII-----RKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++E + I +K FD++ R Q+ D Y Y LI R ++ A+ V
Sbjct: 80 IVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLG 139
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M K PD T + ++ G+ +DA+ + + M++ P+ + F L+ GL H
Sbjct: 140 KMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLH 198
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K +PD Y Y +I + + GK+ + ++ S+ + + P+ YT +I
Sbjct: 484 ALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P+ + L++ L
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARL 581
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY +I R G EA ++ M+++ PDS Y +IR L+DG A +
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAE 591
Query: 199 IYEDM 203
+ ++M
Sbjct: 592 LIKEM 596
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + LI L K +EA+ + + M + PD TY V+ G K G A+
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
++ + M K + + + ++ GL +
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKY 268
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L + G + A ++++ M + + PD TY+ ++ G K G A+ ++
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E + KS P+ + I+++G+
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMC 511
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D IY +I L + +++A ++ M + + PD TY +I G +DA
Sbjct: 252 EADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASR 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ +MI+ P + F L+ + L + +K ++E+ K + DP
Sbjct: 312 LLSNMIERKINPNVVTFSALIDAFVKEGKL-VEAEKLYDEMI--KRSIDP 358
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 112 VLIE-LERQEETILA-VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLI+ L R + T+ A +KIF + K+ PD+Y Y LI L R G+++EA +++ M
Sbjct: 161 VLIKALCRNDGTVDAGLKIFHEMPKRGC-DPDSYTYGTLISGLCRFGRIDEAKKLFTEMV 219
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++D P TYT +I G + +AM E+M P + L+ GL
Sbjct: 220 EKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLC 273
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L R +E A K+F + ++D P Y LI L + ++EAM+ E M
Sbjct: 198 LISGLCRFGRIDE---AKKLFTEMVEKDC-APTVVTYTSLINGLCGSKNVDEAMRYVEEM 253
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + + P+ TY+ ++ G KDG AM ++E M+ P + + L+ GL +
Sbjct: 254 KGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 229 RSKV----KKDFEELFPEKHAY 246
+ V + + + L P+ Y
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLY 335
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + ++ A+++F+++ + +P+ Y LI L + K+ EA+++ + M + L P
Sbjct: 272 LCKDGRSLQAMELFEMMMARGC-RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKP 330
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
D+ Y +VI GF +A N ++MI P L + I +K
Sbjct: 331 DAGLYGKVISGFCAVSKFREAANFLDEMILGGITPNRLTWNIHVK 375
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y L+ L + G+ +AM+++E M P+ TYT +I G K+ +A+
Sbjct: 259 EPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAV- 317
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
EL R+ L+GL P L KV F
Sbjct: 318 -------------ELLDRMNLQGLKPDAGLYGKVISGF 342
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 57/115 (49%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ ++ + + A K++D + K PD Y LI + ++ E M+V+ M +
Sbjct: 325 ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
L ++ TYT +I GF + +A +++ M+ P+ + + ILL GL +
Sbjct: 385 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNN 439
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FD+ K + +PD + Y LI L G+ ++A ++ M ++++ PD + +I
Sbjct: 270 FDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDA 329
Query: 187 FLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPH 225
F+K+G +A +Y++M+KS P+ + + L+KG +
Sbjct: 330 FVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKY 369
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQPD + L+ L + K +EA+ + E M + PD TY VI G K G P A+
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
N+ M K + + + ++ GL +
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKY 263
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D PD Y L+ L G + A+ V+E M+K D+ D TYT +I K G
Sbjct: 419 SDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVE 478
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
D +++ + P + + ++ G R +K++ + LF E
Sbjct: 479 DGWDLFCSLSLKGVKPNVVTYTTMMSG-----FCRKGLKEEADALFVE 521
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AV+ L ++ E LA+ + + + K + D IY +I L + M++A ++ M
Sbjct: 220 AVINGLCKRGEPDLALNLLNKMEKGK-IEADVVIYNTIIDGLCKYKHMDDAFDLFNKMET 278
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ + PD TY +I G +DA + DM++ P+ + F L+ + L
Sbjct: 279 KGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKL-V 337
Query: 231 KVKKDFEELFPEKHAY 246
+ +K ++E+ KH +
Sbjct: 338 EAEKLYDEMVKSKHCF 353
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K+D + D Y +I AL + GK+ + ++ S+ + + P+ TYT ++
Sbjct: 445 ALVVFEYMQKRDM-KLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P + L++ L
Sbjct: 504 SGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARL 542
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y ++ R G EA ++ M+++ P+S TY +IR L+DG A +
Sbjct: 493 KPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAE 552
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
+ ++M + F GL+ + L ++ K F ++
Sbjct: 553 LIKEMRSCGFAGDASTF-----GLVTNMLHDGRLDKSFLDMLS 590
>gi|307135890|gb|ADN33755.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
melo]
Length = 566
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L R+ T A ++ + K + PD++ Y LI L G +NEA++++ M +E
Sbjct: 417 VITSLCRKGNTYPAFQLLYEMTKYG-FTPDSFTYSSLIRGLCMEGMLNEAIEIFSVM-EE 474
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD++ Y +I G K A++++E M+ P E + IL++G++
Sbjct: 475 NNKPDTENYNSLILGCCKSRRTDLALDVFEIMVGKGYLPNETTYTILVEGII 526
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + L+ L + KM +A++V E M + PD+ +YT ++ + G+ AM
Sbjct: 94 KPDVFQATQLLYDLCKACKMRKAIKVMEMMIGSGIIPDASSYTFLVSSLCRKGNVGYAMQ 153
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ + M + P + + L++GL H L ++
Sbjct: 154 LVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQ 188
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
YK +I +L R G A Q+ M K PDS TY+ +IRG +G +A+ I+ M
Sbjct: 414 YKIVITSLCRKGNTYPAFQLLYEMTKYGFTPDSFTYSSLIRGLCMEGMLNEAIEIFSVME 473
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++ P E + L+ G R+ + D E+ K Y P E +
Sbjct: 474 ENNKPDTE-NYNSLILGCCKSR--RTDLALDVFEIMVGK-GYLPNETTY 518
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y L+ +L R G + AMQ+ + M + ++ TY ++RG G+ ++ +
Sbjct: 130 PDASSYTFLVSSLCRKGNVGYAMQLVDKMEEYGYPTNTVTYNSLVRGLCMHGNLTQSLQL 189
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +I+ P + LL+
Sbjct: 190 LDRLIQKGLVPNAYTYSFLLEA 211
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y L+ L G + +++Q+ + + ++ L P++ TY+ ++ K+ +A
Sbjct: 163 YPTNTVTYNSLVRGLCMHGNLTQSLQLLDRLIQKGLVPNAYTYSFLLEAAYKERGADEAS 222
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ +++I P + + +LL GL
Sbjct: 223 KLLDEIIAKGGEPNLVSYNVLLTGLC 248
Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 43/89 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+AY Y L+ A + +EA ++ + + + P+ +Y ++ G K+G
Sbjct: 195 QKGLVPNAYTYSFLLEAAYKERGADEASKLLDEIIAKGGEPNLVSYNVLLTGLCKEGRTE 254
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ ++ ++ P + + ILL+ L
Sbjct: 255 DAIRLFRELPSKGFSPNVVSYNILLRSLC 283
>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 738
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 50/86 (58%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PDA Y +I +T + EA ++++ M++ + PD+ TYT +I G+ K +A
Sbjct: 612 FTPDAVTYTIMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAH 671
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++DM + P+ + + +++KGLL
Sbjct: 672 ELFKDMKERGIKPDVIAYTVIIKGLL 697
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P +Y + AL G M A ++ PD+ TYT +I G+ K +A
Sbjct: 578 KPSKVMYSKIFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYTIMINGYCKTNCLPEAHE 637
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+++DM + P+ + + I++ G LR
Sbjct: 638 LFKDMKERGITPDAVTYTIMINGYCKMNCLR 668
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 98 KTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIR--KQDWYQPDAYIYKDLIIALART 155
K+ + R +K + V L +E A+++ D+ K+ D Y L AL +
Sbjct: 354 KSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAYNILFDALCKL 413
Query: 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
GK+++A+ + + ++ L D + YT +I G+ G P +A +++++M + P+ + +
Sbjct: 414 GKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFKEMEERGFKPDVVAY 473
Query: 216 RILLKGLLPHPLLRSKVKKDFEEL 239
+L G + + DFE +
Sbjct: 474 NVLAAGFF-------RNRTDFEAM 490
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PDA Y +I + + EA ++++ M++ + PD YT +I+G L G
Sbjct: 643 KERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKGLLNSGHT 702
Query: 194 ADAMNIYEDMIKSPDPP 210
A +Y +MI P
Sbjct: 703 EIAFQLYNEMIDMGMTP 719
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Query: 135 QDWYQPDA----YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
QD+ +A Y Y +I K++EA V+ M K+ L PD Y ++ G+
Sbjct: 284 QDYRTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHGYCNS 343
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGL--LPHPLLRSKVKKDFEE--LFPEKHAY 246
+ A+ +Y+ MI + F +L L + L + ++F+E LF ++ AY
Sbjct: 344 RNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFIDRKAY 403
Query: 247 D 247
+
Sbjct: 404 N 404
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
V++FD + K+ D+Y Y I L + + + V + R + YT VI
Sbjct: 244 VVRVFDEM-KEAGVDDDSYCYATFIEGLCKNNRSDLGYAVLQDYRTRNAHVHKYAYTAVI 302
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
RGF + +A +++ +M K P+ + L+ G
Sbjct: 303 RGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHG 339
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + GK+NEA+++ + MR L PD T +I G K G A+N+
Sbjct: 614 PNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINV 673
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ DM ++ P+ + + L+ G
Sbjct: 674 FMDMHQTGLSPDIITYNTLING 695
Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ + A K+FD +++ + P+A +Y L+ + ++++A ++E MRK+ + PD
Sbjct: 348 KEGNVVEARKLFDGLKEMG-FSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDG 406
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
T+ ++ G K G D + +D+ P+ F I + GL
Sbjct: 407 ITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGL 451
Score = 43.9 bits (102), Expect = 0.067, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ ++R + PD + +I L + G+M A+ V+ M + L PD TY +I
Sbjct: 635 ALKLEKVMRHRGLL-PDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLI 693
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ K +A N+ M S P+ + I + G
Sbjct: 694 NGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGF 731
Score = 40.4 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 44/93 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + I L++ G + EA V+ M ++ L P++ Y +I GF K G +A+ +
Sbjct: 579 PDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKL 638
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ M P+ +++ GL +RS +
Sbjct: 639 EKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAI 671
Score = 37.7 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 32/69 (46%)
Query: 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
+ G + A +W M + +FPD ++ I G K G +A N++ +M++ P
Sbjct: 558 KRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNF 617
Query: 214 PFRILLKGL 222
+ L+ G
Sbjct: 618 AYNSLICGF 626
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
DI ++ + +ER E+ + +K + ++ + PD Y LI + G +N A +++
Sbjct: 490 DIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLF 549
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ M+ + PDS TY +I G + G DA+ I+E M+K PE ++ ++
Sbjct: 550 KEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIM 603
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI G ++EA + + K D FP++ TY+ +I G K+G A +
Sbjct: 370 RPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQH 429
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I+++M K P + F L+ GL
Sbjct: 430 IFKEMEKLGCLPSVVTFNSLINGL 453
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L R + EA ++ M +E++ PD YT +IRG ++G +A+ + +M
Sbjct: 306 YGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMT 365
Query: 205 KSPDPPEELPFRILLKG------LLPHPLLRSKVKKDFEELFPEKHAY 246
+ P+ + + L+KG L LR ++ K + FP H Y
Sbjct: 366 ERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISK--HDCFPNNHTY 411
Score = 46.2 bits (108), Expect = 0.014, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 137 WYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
WYQ PD +Y +I L++ G++ EA+ + M + L PD+ Y +I+GF
Sbjct: 325 WYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFC 384
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
G +A ++ ++ K P + IL+ G+ + L+ +K + F+E+
Sbjct: 385 DMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLI-NKAQHIFKEM 434
Score = 45.4 bits (106), Expect = 0.020, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+ F ++R D +PD + + ++ L R A+ V+ M K +L PD TY +I
Sbjct: 147 AVESFSLMRDFDC-KPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILI 205
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K DA+ ++++M P ++ + I+L GL
Sbjct: 206 HGLCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGL 243
Score = 40.0 bits (92), Expect = 0.83, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+ Y LI L R G+ +A++++E M K+ P+S TY ++ ++ + + A+
Sbjct: 557 HMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLAL 616
Query: 198 NIY 200
+++
Sbjct: 617 SVW 619
>gi|326522967|dbj|BAJ88529.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 539
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDA 142
L+R +++L + HV + + EL R++ + ++IF ++KQ WY D
Sbjct: 63 LRRTDGGKDRLVSVLDRHVKVVRTEHCFLLFEELGRRDGWVQCLEIFRWMQKQRWYVADN 122
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL--KDGSPADAMNI- 199
IY LI + R G++ AM ++ MR PD+ Y +I L +D S A +
Sbjct: 123 GIYSKLISVMGRKGQIRMAMWLFSQMRNSGCKPDTSVYNSLIGAHLHSRDKSKALVKALG 182
Query: 200 YEDMIKSPD--PPEELPFRILLKGL 222
Y D +K + P + + ILL+
Sbjct: 183 YFDKMKGMERCQPNIVTYNILLRAC 207
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 18/148 (12%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I A L ++ + + A+ FD ++ + QP+ Y L+ A AR + +++ +
Sbjct: 164 IGAHLHSRDKSKALVKALGYFDKMKGMERCQPNIVTYNILLRACARASDTKQVDILFKDL 223
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + PD TY VI G+ K+G + ++ M P+ + F IL+
Sbjct: 224 DESIVSPDIYTYNGVIDGYGKNGMITEMESVLVRMKSKQCRPDVITFNILI--------- 274
Query: 229 RSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ + K +D E++F L
Sbjct: 275 ---------DSYGRKQTFDKMEQVFKSL 293
>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62470, mitochondrial-like [Glycine max]
Length = 510
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ FD++ + QPDA +Y LI R KM+ + + MR+ PD +TY +I
Sbjct: 292 AIEYFDVMVDRGC-QPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALI 350
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE---ELFP 241
+ P DA+ IY+ MI+S P + +++K V K++E E++
Sbjct: 351 KLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYF--------VTKNYEMGHEIWD 402
Query: 242 EKH 244
E H
Sbjct: 403 EMH 405
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIEL-----ERQEETILAVKIFDII 132
F++ L R + E + K + LL M+ ++ I+ +R++E V IFD++
Sbjct: 105 FMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAFAEAKQRKKE----VGIFDLM 160
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
+K ++ + L+ +L+ EA V+E + K+ P QTYT ++ G+ + +
Sbjct: 161 KKYG-FKVGVDVINFLLDSLSTAKLGKEAQAVFEKL-KDRFTPSLQTYTILLSGWCRLKN 218
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+A ++ +MI P+ + ++L+G LL+ K K D +LF A P +
Sbjct: 219 LLEAGRVWNEMIDRGFNPDIVAHNVMLEG-----LLKCKKKSDAIKLFEIMKAKGPSPNV 273
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 39/94 (41%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D + P Y L+ R + EA +VW M PD + ++ G LK +
Sbjct: 196 KDRFTPSLQTYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKS 255
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
DA+ ++E M P + I+++ L+
Sbjct: 256 DAIKLFEIMKAKGPSPNVRSYTIMIQDFCKQKLM 289
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 108 DIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
DIVA + LE + ++ A+K+F+I++ + P+ Y +I + M EA++
Sbjct: 237 DIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKG-PSPNVRSYTIMIQDFCKQKLMGEAIEY 295
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-- 222
++ M PD+ YT +I GF + ++ ++M + PP+ + L+K +
Sbjct: 296 FDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTS 355
Query: 223 --LPHPLLRSKVKKDFEELFPEKHAYD 247
+P +R K + P H Y+
Sbjct: 356 QHMPDDAVRIYKKMIQSGIKPTIHTYN 382
>gi|9758872|dbj|BAB09426.1| unnamed protein product [Arabidopsis thaliana]
Length = 495
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 67 RGKKLIGKEALFVIL---GLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
+ K+ ++A+ +IL K + ++ +K + VL L I A+ E
Sbjct: 80 KNTKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES------- 132
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+++F+++R+Q WY+P+ IY LI+ L + + +A ++++ M E + + YT +
Sbjct: 133 -AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTAL 191
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + + G A + E M S + P+ + IL+K L
Sbjct: 192 VSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ IY LI AL + G+ +E V E MR+ PD+ TY +I GF + A +
Sbjct: 253 DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL 312
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E+M+ P+ + + +++ GL
Sbjct: 313 EEMVAKGCKPDVISYNVIISGLC 335
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 92 KLQKFIKTHVLRL---LKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
+L+K + + LRL + ++A L ++ R++E + ++ +++ +PD Y +
Sbjct: 240 ELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM----RENGCKPDTVTYNAM 295
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
I A V E M + PD +Y +I G K+G +A +++EDM +
Sbjct: 296 ISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGC 355
Query: 209 PPEELPFRILLKGLL 223
P+ +RIL GL
Sbjct: 356 TPDVGSYRILFDGLC 370
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 116 LERQEETI-LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L + +ET+ A++IF + + QPD+Y Y LI L R G ++EA ++++ M ++
Sbjct: 165 LCKNKETVDSALRIFQEMPNRGC-QPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFS 223
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT +I G + + +A+ + E+M ++ P + L+ GL
Sbjct: 224 ASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLC 272
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + + +++ D +P+ + Y L+ L + G ++AMQ+ E M K+ P+ TY+ +I
Sbjct: 245 AIGLLEEMKRND-IEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLI 303
Query: 185 RGFLKDGSPADAMNIYEDM-IKSPDPPEELPFRIL 218
G K+ +A+ I + M I+ P L +I+
Sbjct: 304 NGLCKERKLREAVEILDRMRIQGLKPNAGLYGKII 338
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI L G+++EA Q++ M + FPD YT +I GF K DAM I
Sbjct: 279 PNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKI 338
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L++G
Sbjct: 339 FYEMSQKGLTGNTITYTTLIQG 360
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F ++ + + PD Y LI + K+ +AM+++ M ++ L ++ TYT +I
Sbjct: 300 ARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLI 358
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+GF G P A ++ M+ PP + +LL L
Sbjct: 359 QGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLC 397
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 15/132 (11%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQD---------------WYQPDAYIYKDLIIA 151
M +V ++E+ + + ++ I D + K +PD +Y L+
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L +G+ +A + M K + PD T+ +I F+K+G DA +Y +MI+ P
Sbjct: 221 LCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPN 280
Query: 212 ELPFRILLKGLL 223
+ L+ GL
Sbjct: 281 IFTYTSLINGLC 292
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD + + LI ++ EAM + M + + PD YT +I K+G +A+
Sbjct: 137 FEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNAL 196
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++ M P+ + + L+ GL
Sbjct: 197 SLFNQMENYGIRPDVVMYTSLVNGLC 222
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 10/120 (8%)
Query: 125 AVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A+ IF+ ++K+ D P+ Y L+ L GK+ +A+ V+ M+K D+ TYT
Sbjct: 405 ALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTI 464
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKD 235
+I+G K G DA+N++ + P + + ++ GL H L R K+K+D
Sbjct: 465 IIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFR-KMKED 523
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF + Q + Y LI GK N A +V+ M + P+ +TY ++
Sbjct: 335 AMKIFYEM-SQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLL 393
Query: 185 RGFLKDGSPADAMNIYEDMIK---SPDPPEELPFRILLKGLL 223
+G A+ I+EDM K PP + +LL GL
Sbjct: 394 HCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLC 435
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF---PDSQTYTEVIRGFLKDGSPADA 196
P+ Y L+ L GK+N+A+ ++E M+K ++ P+ +TY ++ G +G A
Sbjct: 384 PNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKA 443
Query: 197 MNIYEDMIK 205
+ ++ DM K
Sbjct: 444 LMVFGDMQK 452
>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
Length = 535
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD R + PD +Y ++ A R G+++EA +V+ M++ + P+ TYT VI
Sbjct: 225 AQALFDSCRT--VFTPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVYTYTAVI 282
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G A + MI S PP F +++
Sbjct: 283 DAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 319
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMN--EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+PD Y LI G+ N A++V + M + PD T+ + R + G+ A
Sbjct: 342 EPDIITYNFLIETHCGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVLGNIGAA 401
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHP----LLRSKVKKDFEELFPEKHAYDPPEEI 252
+YE M + P + + LLK +LR K D E + P H Y E
Sbjct: 402 HKLYEKMRELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPNMHTYAALIEA 461
Query: 253 F 253
F
Sbjct: 462 F 462
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R + L +K++D+++ ++ P+ Y Y +I AL + +++EA + ++ D+FP
Sbjct: 351 RTGDIRLGLKVWDVMKARN-VSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKP 409
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
Y VI GF K G+ +A I +M + P+++ F IL+ G
Sbjct: 410 FIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIG 453
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 8/109 (7%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW-ESMRKEDL 173
E+E+ E A++ F + PD Y LI L + +++ A + E + D
Sbjct: 213 EVEKGFELFNAMQSFGCL-------PDVVTYNTLISGLCKANELDRACDLLKEVQSRNDC 265
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PD TYT +I GF K G A ++E+MI+S P + F +L+ G
Sbjct: 266 SPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGF 314
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQ 135
+I GL R + E+ + F L D+V ++ L + E A + ++ +
Sbjct: 204 LIRGLCRVGEVEKGFELFNAMQSFGCLP-DVVTYNTLISGLCKANELDRACDLLKEVQSR 262
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ PD Y +I + GK+ A ++E M + + P T+ +I GF K G+
Sbjct: 263 NDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVA 322
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
A ++E M P+ + F L+ G
Sbjct: 323 AEAMHEKMASYSCIPDVVTFTSLIDG 348
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P +IY +I + G ++EA + M ++ PD T+T +I G G +A++I
Sbjct: 407 PKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDI 466
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P+ + L+ LL
Sbjct: 467 FKKMLAIGCAPDNITISSLVACLL 490
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI RTG + ++VW+ M+ ++ P+ TY+ +I KD +A ++
Sbjct: 337 PDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDL 396
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ S P+ + ++ G
Sbjct: 397 LRQLKCSDVFPKPFIYNPVIDGFC 420
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LII G+M EA+ +++ M PD+ T + ++ LK G P++A +
Sbjct: 441 RPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDNITISSLVACLLKAGKPSEAFH 500
Query: 199 IYE 201
I +
Sbjct: 501 IVQ 503
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D + D+ + L+ + A+ GK + A ++ ++ E+ S Y ++ +K G
Sbjct: 120 RSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKV 179
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+A+ ++++ + PP F IL++GL +V+K F ELF ++
Sbjct: 180 HEAIFLFKENLAFHSPPNTWTFNILIRGLCR----VGEVEKGF-ELFNAMQSF 227
>gi|145358679|ref|NP_198856.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171831|sp|Q9FND8.1|PP409_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g40400
gi|10178151|dbj|BAB11596.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|110742507|dbj|BAE99171.1| hypothetical protein [Arabidopsis thaliana]
gi|332007160|gb|AED94543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 610
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ ++PD Y L+ + R G++ EA +++ M + + PD TYT +I+G KDG
Sbjct: 263 EEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRV 322
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+A + M+ P+ + + L+ +++ K
Sbjct: 323 REAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKK 362
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA Q + M + PD +Y +I + K+G + +
Sbjct: 304 PDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKL 363
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+M+ + P+ +++++G + L S V
Sbjct: 364 LHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVN 397
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI A + G M ++ ++ M + PD T ++ GF+++G A+N
Sbjct: 338 KPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLSAVN 397
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y + L E E M +E PD TY ++ + + G +A
Sbjct: 233 HPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFY 292
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ M + P+ + + L+KGL
Sbjct: 293 LYKIMYRRRVVPDLVTYTSLIKGLC 317
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 102 LRLLKMDI---VA--VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156
LR LK+DI V +++ L ++ + A + D I +++ ++ Y +LI +L+R
Sbjct: 402 LRRLKVDIPFEVCDFLIVSLCQEGKPFAAKHLLDRIIEEEGHEAKPETYNNLIESLSRCD 461
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
+ EA+ + ++ ++ D++TY +I + G +A ++ +M S P+
Sbjct: 462 AIEEALVLKGKLKNQNQVLDAKTYRALIGCLCRIGRNREAESLMAEMFDSEVKPDSFICG 521
Query: 217 ILLKG 221
L+ G
Sbjct: 522 ALVYG 526
>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI KMNEAM+V+ M PD +T +I G+ KD + M++
Sbjct: 320 PDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHL 379
Query: 200 YEDMIKSPDPPEELPFRILLKGLL--PHPLLRSKVKKDFEELFPEKHAY 246
E+M K P+ + + L+ G PL +ELF H Y
Sbjct: 380 LEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAA-------KELFLNMHKY 421
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F ++ + PD ++ LI + +N+ M + E M K PD T+T +I
Sbjct: 341 AMRVFHLMVSRGCL-PDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLI 399
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
GF + G P A ++ +M K P ++L GL LL V
Sbjct: 400 GGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVS 448
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
M + A++ L Q AV + D + K Y D Y Y LI L +TG A++
Sbjct: 148 MTLTALINGLCVQGNVAQAVGLVDHMEKMR-YPLDVYTYGVLINGLCKTGDTLAAVEWLR 206
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M + + P+ Y+ ++ G KDG ++A+N+ +M P + + L++GL
Sbjct: 207 KMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLC 263
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
IY L+ + GK+N A +++ S+ + L + TYT +I+G K GS A ++ +M
Sbjct: 464 IYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINM 523
Query: 204 IKSPDPPEELPFRILLKGLLP 224
++ P+ + + ++GLL
Sbjct: 524 EENGCLPDNCTYNVFVQGLLT 544
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLI L + +T+ AV+ + +++W +P+ +Y ++ L + G ++EA+ + M
Sbjct: 186 GVLINGLCKTGDTLAAVEWLRKMEERNW-KPNVVVYSTIMDGLCKDGLVSEALNLCSEMS 244
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+ + P+ TY +I+G G + ++ ++MIK
Sbjct: 245 GKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIK 280
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + M++AM+V +M K + PD TY+ ++ G+ G P + +
Sbjct: 236 SPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIG 295
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
M P + +R L+ L + +K +K F+ +
Sbjct: 296 TLNKMRSDGVEPNVVTYRSLMNYLCKNGRC-TKARKIFDSM 335
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ QPD +++ LI A A+ K+++AM V+ MR+ L P+ Y VI K GS
Sbjct: 372 RNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVD 431
Query: 195 DAMNIYEDMIKSPDPPE 211
DAM +E MI P
Sbjct: 432 DAMLYFEQMIDEGLTPN 448
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +P+ Y+ L+ L + G+ +A ++++SM K L PD TY +++G+ G+
Sbjct: 301 RSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 360
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 361 VEMHALLDLMVRNGIQPDHHVFNILI 386
>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
origanoides]
Length = 431
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + KM++A + ++ M + L P+ T+T +I G K+G A
Sbjct: 209 QPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKE 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 269 IYKQMLSQSLLPDLITYNTLIYGLC 293
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ A ++++ M + L PD TY +I G K G A ++
Sbjct: 245 PNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+DM P+++ + L+ G L S
Sbjct: 305 IDDMSMKGLKPDKITYTTLIBGCCKEGDLDS 335
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G + +A + + M + L PD TYT +I G K+G A
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEH 339
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+ +++ + L+ GL
Sbjct: 340 RKRMIQENIRLDDVVYTALISGLC 363
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y LI L + G+ +A ++ M L PD+ TYT +I F K G +
Sbjct: 351 DDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M + P + + +L+ G
Sbjct: 411 KEMQRDGHAPSVVTYNVLMNG 431
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P L+ R G ++E ++ M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ DA +++M+ P + F L+ G
Sbjct: 218 LINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDG 256
>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
gi|223943161|gb|ACN25664.1| unknown [Zea mays]
gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
Length = 535
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD R + PD +Y ++ A R G+++EA +V+ M++ + P+ TYT VI
Sbjct: 225 AQALFDSCRT--VFTPDVVLYTAVVHAWCRAGRLDEAERVFTEMQQSGIMPNVYTYTAVI 282
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G A + MI S PP F +++
Sbjct: 283 DAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAIMRS 319
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q P+ Y Y +I A+ R G++ A ++ M P++ T+ ++R +K G
Sbjct: 267 QQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAIMRSHVKAGRS 326
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL-------KGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ ++ M + P+ + + L+ +G L L+ K ++ P+ H +
Sbjct: 327 EQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGNL-DAALKVLDKMTAKKCVPDCHTF 385
Query: 247 DP 248
+P
Sbjct: 386 NP 387
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMN--EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+Q +PD Y LI G+ N A++V + M + PD T+ + R L G
Sbjct: 337 QQLRCEPDVITYNFLIETHCGKGQGNLDAALKVLDKMTAKKCVPDCHTFNPMFRLLLVLG 396
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP----LLRSKVKKDFEELFPEKHAYD 247
+ A +YE M + P + + LL+ +LR K D E + P H Y
Sbjct: 397 NIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMKKDMDAEGIEPNMHTYA 456
Query: 248 PPEEIF 253
E F
Sbjct: 457 ALIEAF 462
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 49/82 (59%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y LI L + G++ +A ++++ + ++DL PD TY+ +I G+ K G+ +A +
Sbjct: 694 PNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKL 753
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++MI P+ + IL+ G
Sbjct: 754 FDEMISKGISPDGYIYCILIDG 775
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y I L +TG ++EA++V + M ++ L PD TYT ++ GF K +A
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+E M S P + L+ G +
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFI 357
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I +L++ GK EAM V+ K + PD Y +I GF K+G A +
Sbjct: 624 PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQL 683
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y++M+ + P + + L+ GL
Sbjct: 684 YDEMLHNGINPNIVVYNTLINGL 706
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ + + EA ++ESM L P+ TYT +I GF+K+G+ +A+ I
Sbjct: 309 PDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRI 368
Query: 200 YEDMI 204
++MI
Sbjct: 369 KDEMI 373
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LII L R K+ EA + M ++ + P++ TY I + K G A
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++DM+ S P + + IL+KG
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKG 600
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +A+ G+M +AM ++ M L PD+ TY +I G+LK A A + +M
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443
Query: 205 KSPDPPEELPFRILLKGL 222
P + +L+ GL
Sbjct: 444 ARKLTPSPFTYSVLISGL 461
Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + G + EA+++ + M L + TY +I G K G A AM++
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M+ + P+ + +L+ G L
Sbjct: 404 FNEMLMAGLEPDTWTYNLLIDGYL 427
Score = 43.5 bits (101), Expect = 0.088, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ IY LI G EA+ ++ M ++ L PD + Y+ +I K+G +AM +
Sbjct: 589 PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGV 648
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +K+ P+ + L+ G
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGF 671
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E A ++FD I ++D PD Y +I ++G + EA ++++ M + + PD Y
Sbjct: 711 EVTKARELFDEIEEKDLV-PDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIY 769
Query: 181 TEVIRGFLKDGSPADAMNIYED 202
+I G K+G+ A++++ +
Sbjct: 770 CILIDGCGKEGNLEKALSLFHE 791
Score = 39.3 bits (90), Expect = 1.7, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A K+FD +I K PD YIY LI + G + +A+ ++ +++ + S + +
Sbjct: 750 AFKLFDEMISKG--ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS-AFNSL 806
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
I F K G +A +++DM+ P + + IL+ ++++ ++ E+LF
Sbjct: 807 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDA-----YGKAEMMEEAEQLF 858
>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
Length = 642
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 64 SLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
SLWR + E L + K + D I + R K+D+ +++ +E +
Sbjct: 430 SLWRAGRTTEAERLLERMSEKGYSLDTAGCNIIIDG-LCRNSKLDVAMGIVDGMWEEGST 488
Query: 124 ----LAVKIFDIIRKQDWYQ---PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
L ++ Q PD Y LI AL + G+ +EA + M +D+ PD
Sbjct: 489 ALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPD 548
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
S Y I G+ K G + A+ + DM K P + +L++G
Sbjct: 549 SVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRG 593
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P++Y Y ++ L + GK +A +V +R + PD TYT ++ + G+ A A
Sbjct: 348 HPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANR 407
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I ++M + P + +LL+ L
Sbjct: 408 ILDEMAQKGCAPNSFTYNVLLQSL 431
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
K+ ++I K PD+ IY I + GK + A++V M K+ P ++TY +IRG
Sbjct: 536 KLLEMIVKD--ISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRG 593
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK-----GLLPHPLL 228
F + + M + +M + P L + L+K G+L P L
Sbjct: 594 FEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQGMLTRPCL 640
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM---NIYE 201
Y + L R G++ EA ++ M E + P+S TY ++ G K+G DA N
Sbjct: 319 YNRWLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIR 378
Query: 202 DMIKSPD 208
+ SPD
Sbjct: 379 SGVMSPD 385
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 5/110 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F ++ + + PD Y LI + K+++AM+++ M ++ L ++ TYT +I
Sbjct: 301 ARQMFYLMETKGCF-PDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLI 359
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+GF + G P A ++ M+ PP + +LL L + KVKK
Sbjct: 360 QGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYN----GKVKK 405
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI G ++EA Q++ M + FPD YT +I GF K DAM I
Sbjct: 280 PNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKI 339
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M + + + L++G
Sbjct: 340 FYEMSQKGLTGNTITYTTLIQGF 362
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++ L + A+ +FD + +PD +Y L+ L +G+ +A + M
Sbjct: 181 TTIIDSLCKNGHVNYALSLFDQMENYG-IRPDVVMYTSLVNGLCNSGRWRDADSLLRGMT 239
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K + PD T+ +I F+K+G DA +Y +MI+ P + L+ G
Sbjct: 240 KRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFC 293
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 125 AVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
A+ IF+ ++K+ D P+ + Y L+ L GK+ +A+ V+E MRK ++ TYT
Sbjct: 406 ALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTI 465
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKD 235
+I+G K G +A+N++ + P + + ++ GL H L R K+K+D
Sbjct: 466 IIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFR-KMKED 524
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 7/104 (6%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD + LI +M EAM + M + + PD YT +I K+G A+
Sbjct: 138 FEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYAL 197
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKK 234
++++ M P+ + + L+ GL LLR K+
Sbjct: 198 SLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKR 241
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL---FPDSQTYTEVIRGFLKDGSPADA 196
P+ Y L+ L GK+ +A+ ++E M+K ++ P+ TY ++ G +G A
Sbjct: 385 PNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKA 444
Query: 197 MNIYEDMIK 205
+ ++EDM K
Sbjct: 445 LMVFEDMRK 453
>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 376
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 49/87 (56%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++ +I L GKM A+ ++ +M + D P+ T+ ++ GF KDG +A+
Sbjct: 265 FKPDVQMHNIMIHGLCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNAL 324
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLP 224
I+ ++++ P+ + + I LKGL
Sbjct: 325 VIWARIMRNGLQPDIISYNITLKGLCS 351
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + + + K +P+A++Y LI L K +A++V M P TY+ +I
Sbjct: 148 AVSVLNGMIKSG-CKPNAHVYNALINGLVGASKFEDAIRVLREMGTTHFSPTVVTYSTLI 206
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
G K +A ++ ++M+ P + + +L+KGL L KV+K F+
Sbjct: 207 NGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGL----CLDCKVEKAFQ 255
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ Y D+ Y L+ + G +N+++ V E ++ D+ Y+ +I G K+
Sbjct: 86 KESGYVEDSITYGILVHGFCKNGYLNKSLHVLEIAERKGGVLDAFAYSAMINGLCKEAKL 145
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+++ MIKS P + L+ GL+
Sbjct: 146 DKAVSVLNGMIKSGCKPNAHVYNALINGLV 175
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + K+ + DA Y LI L+ +G+ +A ++ M K + P+ +T +I
Sbjct: 203 ALEVFYCMEKKGI-RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 261
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
F+K+G+ +A N+Y++MI+ P + L+ G H L
Sbjct: 262 DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCL 305
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ + + PD Y LI ++ ++ + M+++ M + L D+ TY +I G+
Sbjct: 311 MFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 369
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ G A ++ M+ P+ + + ILL L +
Sbjct: 370 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNN 407
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+ IY +I L + +N A++V+ M K+ + D+ TY +I G G DA
Sbjct: 180 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 239
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
+ DM+K P + F L+
Sbjct: 240 RLLRDMVKRKIDPNVIFFTALI 261
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G + EA +++ M + + P+ TY +I GF G DA +
Sbjct: 252 PNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYM 311
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M+ P+ + + L+ G +SK +D +LF E
Sbjct: 312 FDLMVSKGCFPDVVTYNTLITG-----FCKSKRVEDGMKLFCE 349
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y LI + GK+N A +V+ M + PD TY ++ +G A+ +
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 417
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
ED+ KS + + + I+++GL
Sbjct: 418 EDLQKSEMDVDIITYNIIIQGLC 440
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI G + +A +++ M + FPD TY +I GF K D M +
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + L+ G
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIHG 368
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A K+F+ R D PD Y L+ L GK+ +A+ + E ++K ++ D TY
Sbjct: 377 VAQKVFN--RMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNI 434
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE-- 238
+I+G + +A ++ + + P+ + + ++ GL L R K+ + +E
Sbjct: 435 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
Query: 239 LFPEKHAYD 247
P + YD
Sbjct: 495 FMPSERIYD 503
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++ L R A + D++ +D PD Y LI +R G EA+ ++ +R
Sbjct: 317 TIMYSLCRLGRVSDARRYLDVMVNEDL-MPDLVSYNTLIYGYSRLGNFAEALLLFSELRS 375
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++L P TY +I G + G+ A + +DMIK P+ + F IL++G
Sbjct: 376 KNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFC 428
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + + PD Y LI L + G ++A ++ + MR E + PD TYT +I L G
Sbjct: 479 KAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLL 538
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
A ++ DM+K P + + +L+
Sbjct: 539 RKAEEVFSDMLKKGIHPSVVTYTVLI 564
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ + G + A ++++ M L PD YT I G LK G+P+ A +
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGM 474
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E+M PP+ + + +L+ GL
Sbjct: 475 KEEMKAEGFPPDLITYNVLINGLC 498
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y ++ +L R G++++A + + M EDL PD +Y +I G+ + G+ A+A+ +
Sbjct: 310 PTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLL 369
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ ++ P + + L+ G
Sbjct: 370 FSELRSKNLVPSVVTYNTLIDG 391
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F +R ++ P Y LI RTG ++ A + + M K L PD T+T ++
Sbjct: 366 ALLLFSELRSKNLV-PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILV 424
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
RGF + G+ A ++++M+ P+ + + + G
Sbjct: 425 RGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVG 461
Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y I+ + G ++A + E M+ E PD TY +I G K G+ DA
Sbjct: 449 KPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANE 508
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + M P+ + + ++ L LLR EE+F +
Sbjct: 509 LVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKA-----EEVFSD 547
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K FD ++ + P+ Y LI L + M+ A ++ M + + P+ TYT +I
Sbjct: 576 AKKYFDEMQDKG-VSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILI 634
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA+ +Y+DM+ P+ L+K L
Sbjct: 635 NENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHL 672
>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
Length = 447
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+A+ Y LI + G+M++A+ V+ M+ L P++ T ++ G + G + A+
Sbjct: 21 FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 80
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M P P ILL+G
Sbjct: 81 KLFREMQAGPFLPTSASHNILLRGFF 106
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P+ + Y +I + K+ EA +V+ M + + P++ T+ +I GF K G DA+
Sbjct: 190 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 249
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M K + + L+ L
Sbjct: 250 KLFAEMEKIGCKATIVTYNTLIDSLC 275
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F + K P+A L++ L G+M+ A++++ M+ P S ++ ++
Sbjct: 44 AVSVFSDM-KSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILL 102
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
RGF G A+ +++M S P+ + ILL L
Sbjct: 103 RGFFMAGR---AIEFFKEMKASGVEPDLESYHILLSAL 137
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD Y L+ AL+ +G+M EA ++ +M PD TY ++ G+ K G
Sbjct: 119 KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQT 175
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A ++ ++++K+ P + I++
Sbjct: 176 YEAQSLMKEILKAGYEPNVFTYSIIIN 202
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
K ++A+++++ + P++ TY +IRGF K G A++++ DM S P
Sbjct: 5 KHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMN 64
Query: 217 ILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
LL GL + S +K LF E A
Sbjct: 65 TLLLGLCEIGQMSSALK-----LFREMQA 88
>gi|20279450|gb|AAM18730.1|AC092548_8 hypothetical protein [Oryza sativa Japonica Group]
Length = 729
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ PD Y +I L + G+M +A QV MR + + P++ TY +I G++ G
Sbjct: 495 EQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEMRVKGVMPNTVTYNTLIHGYVALGDN 554
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A A ++E+M+K+ + + + L+ GL
Sbjct: 555 AMAGRVHEEMVKNRVELDIVTYNALILGLC 584
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K+ ++R+ D +P+A + LI+ + A+Q+ M+K P+ TY VI
Sbjct: 591 KVEHLLRELDRAKLEPNASTFSALIVGWCKMQNSERALQLLNVMKKSGFHPNYTTYKMVI 650
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K+ A+++ DM+ P++ GL
Sbjct: 651 SSFCKNKDLEGAVDVMGDMLGRCIAPDKALLNEFFDGL 688
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 145 YKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ LI A R G A+Q+ M +E L PD TY +I G K+G A + +M
Sbjct: 470 FNTLIAAYCRDGVDAGPALQLKMKMEQEGLVPDVVTYDTIIHGLCKEGRMGKANQVLSEM 529
Query: 204 IKSPDPPEELPFRILLKG 221
P + + L+ G
Sbjct: 530 RVKGVMPNTVTYNTLIHG 547
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++++++ + Y PD + Y LI L G ++EA Q++ M + +P+ YT +I
Sbjct: 277 AKELYNVMIQMSVY-PDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLI 335
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF K D M I+ +M + + + +L++G
Sbjct: 336 HGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQG 372
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 53/101 (52%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F ++ + Y P+ IY LI ++ ++ + M+++ M ++ + ++ TYT +I
Sbjct: 312 ARQMFYLMERNGCY-PNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLI 370
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G+ G P A ++ M PP+ + +LL GL +
Sbjct: 371 QGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCN 411
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L GK+ +A+ ++E MRK ++ + TYT +I+G K G DA ++
Sbjct: 396 PDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDL 455
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR---SKVKKDFEELF-PEKHAY 246
+ + P + + ++ G L+ S KK E+ F P + Y
Sbjct: 456 FCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + + +P+ Y L+ L G+ +A + M K + P+ T+T +I
Sbjct: 207 AVELFNQM-GTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALI 265
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
F+K G +A +Y MI+ P+ + L+ GL + LL + ++ F + E++
Sbjct: 266 DAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLL-DEARQMFYLM--ERN 322
Query: 245 AYDPPEEIFGKL 256
P E I+ L
Sbjct: 323 GCYPNEVIYTTL 334
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD I ++P+ Y LI L + +N A++++ M P+ TY ++
Sbjct: 172 AIALFDQILGMG-FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G DA + DM+K P + F L+ +
Sbjct: 231 TGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFV 269
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI A + GK+ EA +++ M + ++PD TY +I G G +A
Sbjct: 255 EPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQ 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M ++ P E+ + L+ H +SK +D ++F E
Sbjct: 315 MFYLMERNGCYPNEVIYTTLI-----HGFCKSKRVEDGMKIFYE 353
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +RK++ + Y +I + + GK+ +A ++ S+ + + P+ TYT +I
Sbjct: 417 ALMIFEYMRKREM-DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMI 475
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
GF + G +A ++++ M + P E ++
Sbjct: 476 SGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
>gi|297805650|ref|XP_002870709.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297316545|gb|EFH46968.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 608
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ ++PD Y L+ + R G++ EA +++ M + + PD TYT +I+G KDG
Sbjct: 261 EEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYTSLIKGLCKDGRV 320
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+A + M+ P+ + + L+ +++ K
Sbjct: 321 REAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKK 360
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ EA Q + M + PD +Y +I + K+G + +
Sbjct: 302 PDLVTYTSLIKGLCKDGRVREAHQTFHRMVDRGIKPDCMSYNTLIYAYCKEGMMQQSKKL 361
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M+ + P+ +++++G +
Sbjct: 362 LHEMLGNSVVPDRFTCKVIVEGFV 385
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y + L E E M +E PD TY ++ + + G +A
Sbjct: 231 HPNTYTFNILTNVFCNNSNYGEVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFY 290
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ M + P+ + + L+KGL
Sbjct: 291 LYKIMYRRRVVPDLVTYTSLIKGLC 315
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI A + G M ++ ++ M + PD T ++ GF+++G A+N
Sbjct: 336 KPDCMSYNTLIYAYCKEGMMQQSKKLLHEMLGNSVVPDRFTCKVIVEGFVREGRLLAAVN 395
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +P+ Y LI GKM+EA ++ SM + PD
Sbjct: 488 KEGRVIESEKLFDLMVRIG-VKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDC 546
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ + DA+ ++++M+ S P + + I+L+GL
Sbjct: 547 VTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 592
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD +++ LI A A+ K++EAM V+ MR+ L P+ TY VI K GS DAM
Sbjct: 368 HPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAML 427
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ L
Sbjct: 428 YFEQMIDEGLTPNIIVYTSLIHSL 451
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +PD Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 293 RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGAL 352
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 353 VEMHALLDLMVRNGIHPDHHVFNILI 378
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I AL + M++AM+V +M K + P+ TY ++ G+ P +A+
Sbjct: 229 PDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGF 288
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P+ + + L+ L
Sbjct: 289 LKKMRSDGVEPDVVTYNSLMDYL 311
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + L+ L + EA+++ M R PD +YT VI GF K+G A
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKA 215
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAAL 241
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ + + EA+ + MR + + PD TY ++ K+G +A I
Sbjct: 264 PNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKI 323
Query: 200 YEDMIKSPDPPEELPFRILLKGLLP-------HPLLRSKVKKDFEELFPEKHAYD 247
++ M K P+ + LL+G H LL V+ + P+ H ++
Sbjct: 324 FDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG---IHPDHHVFN 375
Score = 37.4 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 35/82 (42%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + G ++A + M + PD TY+ +I K + AM +
Sbjct: 194 PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEV 253
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P + + +L G
Sbjct: 254 LTTMVKNGVMPNCMTYNSILHG 275
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L ++++A ++++M K L PD TYT +I G K+G+ A+++
Sbjct: 428 PDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSL 487
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ M+K+ P+ + + +L+ GL
Sbjct: 488 HDKMVKAGVLPDVVTYSVLINGL 510
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 46/81 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + ++ + + GKM +A +V++ M +E L PD +Y ++ G+ K G +A++
Sbjct: 217 KPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALS 276
Query: 199 IYEDMIKSPDPPEELPFRILL 219
++ +M + P+ + F L+
Sbjct: 277 VFAEMTQKGIMPDVVTFTSLI 297
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 3/137 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AVL+ L T A + FD + D P+ Y Y LI AL G EA+ + MR
Sbjct: 121 AVLLALSDASLTS-ARRFFDSML-SDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRG 178
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
P+ TY ++ F + G A + M+ P + F ++ G+ +
Sbjct: 179 AGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKME- 237
Query: 231 KVKKDFEELFPEKHAYD 247
+K F+E+ E A D
Sbjct: 238 DARKVFDEMMREGLAPD 254
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A + + A ++ + M ++ + PD+ TY+ +IR ++ +DA
Sbjct: 392 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHV 451
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++++MIK P+E + L+ G
Sbjct: 452 LFKNMIKLGLQPDEFTYTSLIDG 474
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 14/134 (10%)
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
++ +LAV+ +Q +P Y LI G+M+EA ++ M + L PD T
Sbjct: 342 DDALLAVRGM----RQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVT 397
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKV 232
Y+ +I + K+ A + + M++ P+ + + L++ L H L ++ +
Sbjct: 398 YSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMI 457
Query: 233 KKDFEELFPEKHAY 246
K + P++ Y
Sbjct: 458 KLGLQ---PDEFTY 468
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ PD Y L+ + G +EA+ V+ M ++ + PD T+T +I
Sbjct: 239 ARKVFDEMMREGL-APDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLI 297
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K G+ A+ + M + E+ F L+ G
Sbjct: 298 HVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFC 336
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD + LI + + G + A+ + MR+ L + T+T +I GF K G
Sbjct: 283 QKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLD 342
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DA+ M + P + + L+ G
Sbjct: 343 DALLAVRGMRQCRIKPSVVCYNALING 369
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
QPD + Y LI + G + A+ + + M K + PD TY+ +I G K +A
Sbjct: 462 QPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEA 519
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+A+ Y LI + G+M++A+ V+ M+ L P++ T ++ G + G + A+
Sbjct: 28 FAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSAL 87
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
++ +M P P ILL+G
Sbjct: 88 KLFREMQAGPFLPTSASHNILLRG 111
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F + K P+A L++ L G+M+ A++++ M+ P S ++ ++
Sbjct: 51 AVSVFSDM-KSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILL 109
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
RGF G DA+ +DM KS + ++LKGL
Sbjct: 110 RGFFMAGRVRDALAHLQDMRKSSSSVATGTYNLVLKGLC 148
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P+ + Y +I + K+ EA +V+ M + + P++ T+ +I GF K G DA+
Sbjct: 239 YEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAI 298
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M K + + L+ L
Sbjct: 299 KLFAEMEKIGCKATIVTYNTLIDSLC 324
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD Y L+ AL+ +G+M EA ++ +M PD TY ++ G+ K G
Sbjct: 168 KASGVEPDLESYHILLSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQT 224
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A ++ ++++K+ P + I++
Sbjct: 225 YEAQSLMKEILKAGYEPNVFTYSIIIN 251
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ L K ++A+++++ + P++ TY +IRGF K G A++++ DM S
Sbjct: 3 LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62
Query: 208 DPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
P LL GL + S +K LF E A
Sbjct: 63 LLPNASTMNTLLLGLCEIGQMSSALK-----LFREMQA 95
>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 819
Score = 55.8 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 43/83 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI A AR G ++EAM++ M ++ PD TYT ++ GF + G AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
NI+E+M + P F +K
Sbjct: 405 NIFEEMRNAGCKPNICTFNAFIK 427
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ R GK+ AM ++E MR P+ T+ I+ + G D M
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMYGNRGKFVDMMK 440
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I++++ P+ + + LL + + S+V F+E+ ++ + P E F L
Sbjct: 441 IFDEINVCGLSPDIVTWNTLL-AVFGQNGMDSEVSGVFKEM--KRAGFVPERETFNTL 495
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 104 LLKMDIVAVLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+L ++A++I + +E + A +F+ + ++D + D Y Y LI A A +G+ EA+
Sbjct: 170 MLDNSVIAIVISMLGKEGRVSSAANLFNGL-QEDGFSLDVYSYTSLISAFANSGRYREAV 228
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM-NIYEDMIKSPDPPEELPFRILLKG 221
V++ M +E P TY ++ F K G+P + + ++ E M P+ + L+
Sbjct: 229 NVFKKMEEEGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT- 287
Query: 222 LLPHPLLRSKVKKDFEELFP-----EKHAYDPPEEIFGK 255
L + + FEE+ +K Y+ +++GK
Sbjct: 288 CCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGK 326
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 32/70 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K D PDAY Y LI R EA QV+E M+ D TY ++ + K P
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYNALLDVYGKSHRP 330
Query: 194 ADAMNIYEDM 203
+AM + +M
Sbjct: 331 KEAMKVLNEM 340
Score = 42.0 bits (97), Expect = 0.25, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A R +M +A +++ MR + PD TY I + D +A+
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ MIK P + + ++ G
Sbjct: 756 VVRYMIKHGCRPNQNTYNSIVDG 778
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + K + D Y L+ ++ + EAM+V M P TY +I
Sbjct: 298 AAQVFEEM-KAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLI 356
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +DG +AM + M + P+ + LL G
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P+ + LI A +R G +AM V+ M + PD TY V+ + G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + +M P EL + LL
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLL 566
>gi|255568420|ref|XP_002525184.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535481|gb|EEF37150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 740
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED---LFPDSQTYTEVIRGFLKDGSPA 194
Y PD+ IY L+ G++++ +++ E+MR +D PD +YT VI +K GS
Sbjct: 373 YAPDSRIYTTLMKGYMNQGRVSDTIRMLEAMRHQDDNASHPDHVSYTTVISALVKAGSMD 432
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
A + +M + P + + ILLKG H
Sbjct: 433 RARQVLAEMTRIGVPANRITYNILLKGHCQH 463
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I + A+ + MR++ + P +YT +++ F G P A
Sbjct: 483 EPDVVSYNTMIDGCIQVDDSAGALAFFNEMREKGIAPTKISYTTLMKAFSLSGQPKLANQ 542
Query: 199 IYEDMIKSP 207
++++M K P
Sbjct: 543 VFDEMFKDP 551
>gi|147789723|emb|CAN67400.1| hypothetical protein VITISV_025966 [Vitis vinifera]
Length = 550
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ FD + + PD Y L+ AL + G ++EA+ + S+ P TY VI
Sbjct: 394 AINFFDQMVSHNCL-PDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVI 452
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G AM +Y +MI+ P+++ R L GL
Sbjct: 453 DGLAKKGCMEKAMGLYGEMIERGFAPDDITHRTLFWGL 490
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++++ LI+LE E +KI + PD Y L+ L + G + A+++ +
Sbjct: 169 INLIRGLIKLESTERATRVLKIMVM----SGGIPDIITYNMLVGGLCKKGLLKTAIELLD 224
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M PD+ TY ++R G A+ ++D ++ P + + +L++ + H
Sbjct: 225 EMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKH 283
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 111 AVLIEL-ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLIEL + T+ A+++ + + + Y PD Y L+ + GK + + ++
Sbjct: 274 TVLIELVCKHCGTVQAMEVLEDMAIEGCY-PDIVTYNSLVNYTCKQGKYEDTALIIYNLL 332
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ P++ TY ++ G + I M + PP + + IL+ GL + LL
Sbjct: 333 SHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNMTSQPPTVVTYNILINGLCKYGLL 391
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L + G ++ A+ ++ M + PD TY ++ K+G +A+++
Sbjct: 373 PTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHL 432
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ + P + + I++ GL
Sbjct: 433 LHSLNDTRCSPGLITYNIVIDGL 455
>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
cujabensis]
Length = 409
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI L + KM+ A ++++ M + L P+ T+T +I G K+G AM I
Sbjct: 206 PDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEI 265
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y+ M+ P+ + + L+ GL
Sbjct: 266 YKQMLSQSLLPDLITYNTLIYGLC 289
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 241 PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 300
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 301 IDEMSXKGLKPDKFTYTTLIDGCC 324
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 261 LAMEIYKQMLSQSLL-PDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTL 319
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 320 IDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLC 359
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M PD TY+
Sbjct: 156 VAQSVFDAITK--WGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSV 213
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ A ++++M+ P + F L+ G
Sbjct: 214 LINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDG 252
>gi|255032605|gb|ACT99053.1| unknown [Lactuca sativa]
gi|255032607|gb|ACT99054.1| unknown [Lactuca sativa]
gi|255032609|gb|ACT99055.1| unknown [Lactuca sativa]
gi|255032611|gb|ACT99056.1| unknown [Lactuca sativa]
gi|255032613|gb|ACT99057.1| unknown [Lactuca sativa]
gi|255032615|gb|ACT99058.1| unknown [Lactuca sativa]
gi|255032617|gb|ACT99059.1| unknown [Lactuca sativa]
gi|255032619|gb|ACT99060.1| unknown [Lactuca sativa]
gi|255032621|gb|ACT99061.1| unknown [Lactuca sativa]
gi|255032623|gb|ACT99062.1| unknown [Lactuca sativa]
gi|255032625|gb|ACT99063.1| unknown [Lactuca sativa]
gi|255032631|gb|ACT99066.1| unknown [Lactuca sativa]
gi|255032637|gb|ACT99069.1| unknown [Lactuca sativa]
gi|255032639|gb|ACT99070.1| unknown [Lactuca sativa]
gi|255032641|gb|ACT99071.1| unknown [Lactuca sativa]
gi|255032649|gb|ACT99075.1| unknown [Lactuca sativa]
gi|255032651|gb|ACT99076.1| unknown [Lactuca sativa]
gi|255032663|gb|ACT99082.1| unknown [Lactuca sativa]
gi|255032665|gb|ACT99083.1| unknown [Lactuca sativa]
gi|255032667|gb|ACT99084.1| unknown [Lactuca sativa]
gi|255032669|gb|ACT99085.1| unknown [Lactuca sativa]
gi|255032673|gb|ACT99087.1| unknown [Lactuca sativa]
gi|255032675|gb|ACT99088.1| unknown [Lactuca sativa]
gi|255032681|gb|ACT99091.1| unknown [Lactuca sativa]
gi|255032683|gb|ACT99092.1| unknown [Lactuca sativa]
gi|255032689|gb|ACT99095.1| unknown [Lactuca sativa]
gi|255032691|gb|ACT99096.1| unknown [Lactuca sativa]
gi|255032693|gb|ACT99097.1| unknown [Lactuca serriola]
gi|255032695|gb|ACT99098.1| unknown [Lactuca sativa]
gi|255032699|gb|ACT99100.1| unknown [Lactuca sativa]
gi|255032701|gb|ACT99101.1| unknown [Lactuca sativa]
gi|255032703|gb|ACT99102.1| unknown [Lactuca sativa]
gi|255032705|gb|ACT99103.1| unknown [Lactuca sativa]
gi|255032707|gb|ACT99104.1| unknown [Lactuca sativa]
gi|255032711|gb|ACT99106.1| unknown [Lactuca sativa]
gi|255032713|gb|ACT99107.1| unknown [Lactuca sativa]
gi|255032715|gb|ACT99108.1| unknown [Lactuca sativa]
gi|255032717|gb|ACT99109.1| unknown [Lactuca sativa]
gi|255032719|gb|ACT99110.1| unknown [Lactuca sativa]
gi|255032721|gb|ACT99111.1| unknown [Lactuca sativa]
gi|255032723|gb|ACT99112.1| unknown [Lactuca sativa]
gi|255032725|gb|ACT99113.1| unknown [Lactuca sativa]
gi|255032727|gb|ACT99114.1| unknown [Lactuca sativa]
gi|255032729|gb|ACT99115.1| unknown [Lactuca sativa]
gi|255032731|gb|ACT99116.1| unknown [Lactuca sativa]
gi|255032733|gb|ACT99117.1| unknown [Lactuca sativa]
gi|255032735|gb|ACT99118.1| unknown [Lactuca serriola]
gi|255032739|gb|ACT99120.1| unknown [Lactuca sativa]
gi|255032743|gb|ACT99122.1| unknown [Lactuca sativa]
Length = 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 66 WRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
WR KK +GKE L + LKR + +L FIK+HV RLLK D+V+VL E +RQ+
Sbjct: 43 WRRKKELGKEGLIIAKELKRLQSSPLRLDHFIKSHVSRLLKSDLVSVLFEFQRQD 97
>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 521
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 55/100 (55%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ D++ ++ P+ + LI + GK++EA +V+ M+ ++ P+ TY +
Sbjct: 273 LALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRVFSEMKLANVAPNVVTYNTL 332
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I GF + G+ + ++E+M ++ + L + L+ GL
Sbjct: 333 INGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLC 372
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI+ L + GK +A + + + K +L P++ T++ +I G + A
Sbjct: 358 KADILTYNGLILGLCKEGKTKKAAYMVKELDKGNLVPNASTFSALIAGQCVRNNSERAFL 417
Query: 199 IYEDMIKSPDPPEELPFRIL 218
+Y M++S P E FR+L
Sbjct: 418 VYRSMVRSGFSPNENTFRML 437
>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
javanica]
Length = 431
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y LI L + M++ ++++ M + L P+S T+T +I G K+G AM
Sbjct: 209 QPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAME 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L GL
Sbjct: 269 IYKQMLSQXLXPDFITYNTLXYGLC 293
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q PD Y L L + G +N+A + + M + L PD TYT +
Sbjct: 265 LAMEIYKQMLSQX-LXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTL 323
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 324 IDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLC 363
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 124 LAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A +FD I K W +P Y L+ R G ++E ++ +M + PD TY+
Sbjct: 160 VAQSVFDAITK--WGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSV 217
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+I G K+ D ++++M+ P + F L+ G
Sbjct: 218 LINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDG 256
Score = 43.5 bits (101), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + LI + G+++ AM++++ M + L PD TY + G K G A +
Sbjct: 245 PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGL 304
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P++ + L+ G
Sbjct: 305 IDEMSMKGLKPDKFTYTTLIDGCC 328
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L PD TYT +I F K G
Sbjct: 351 DDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXL 410
Query: 201 EDMIKSPDPPEELPFRILLKG 221
++M ++ P + + +L+ G
Sbjct: 411 KEMQRNGHVPXVVTYNVLMNG 431
>gi|359488082|ref|XP_002266772.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Vitis vinifera]
Length = 498
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ FD + + PD Y L+ AL + G ++EA+ + S+ P TY VI
Sbjct: 303 AINFFDQMVSHNCL-PDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVI 361
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G AM +Y +MI+ P+++ R L GL
Sbjct: 362 DGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGL 399
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 111 AVLIEL-ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLIEL + T+ A+++ + + + Y PD Y L+ + GK + + ++
Sbjct: 183 TVLIELVCKHCGTVQAMEVLEDMAIEGCY-PDIVTYNSLVNYTCKQGKYEDTALIIYNLL 241
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ P++ TY ++ G + I M + PP + + IL+ GL + LL
Sbjct: 242 SHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLL 300
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++++ LI+LE E +KI + PD Y L+ L + G + A+++ +
Sbjct: 78 INLIRGLIKLESTERATRVLKIMVM----SGGIPDIITYNMLVGGLCKKGLLKTAIELLD 133
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M PD+ TY ++R G A+ ++D ++ P + + +L++ + H
Sbjct: 134 EMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKH 192
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L + G ++ A+ ++ M + PD TY ++ K+G +A+++
Sbjct: 282 PTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHL 341
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ + P + + I++ GL
Sbjct: 342 LHSLNDTRCSPGLITYNIVIDGL 364
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y +I LA+ G M +AM+++ M + PD T+ + G + DA+
Sbjct: 351 SPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALV 410
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I ++M K + FR ++ GL
Sbjct: 411 ILKEMNKRNQRIKNSAFRFVIHGLC 435
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 79/161 (49%), Gaps = 12/161 (7%)
Query: 67 RGKKLIGKEALFVIL---GLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETI 123
+ K+ ++A+ +IL K + ++ +K + VL L I A+ E
Sbjct: 80 KNTKIASRKAISIILRREATKSIIEKKKGSKKLLPRTVLESLHERITALRWES------- 132
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+++F+++R+Q WY+P+ IY LI+ L + + +A ++++ M E + + YT +
Sbjct: 133 -AIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTAL 191
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + + G A + E M S + P+ + IL+K L
Sbjct: 192 VSAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R ++ A KIF+ + ++ Y+ D Y +I ++G MNEA+ SMRK PD
Sbjct: 568 RSDKLSDARKIFEFMEEKGGYR-DIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDE 626
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TYT +I G+ K G A+ DM+K P + + L+ G
Sbjct: 627 FTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLICG 670
Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD ++Y LI R+ K+++A +++E M ++ + D Y +I+G+ K G +A+
Sbjct: 553 QPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVM 612
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
M K P+E + L+ G
Sbjct: 613 CMSSMRKVGCIPDEFTYTTLIDG 635
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD LI L +G+++EA+ V E M + + PD+ Y +I G K + A
Sbjct: 482 HTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAK 541
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
N+ +M++ P++ + L+ G + L S +K F E EK Y
Sbjct: 542 NLLVEMLEQKVQPDKFVYTTLIDGFIRSDKL-SDARKIF-EFMEEKGGY 588
Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + LI A R G + EA+++ + +L P+ +YT +I GF G A
Sbjct: 412 FDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVAS 471
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +MI P+ + L+ GL+
Sbjct: 472 DLLVEMIGRGHTPDVVTLGALIHGLV 497
Score = 43.5 bits (101), Expect = 0.096, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ P+ IY +I AL + ++A+ V M PD T+ +I F ++G
Sbjct: 373 KERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDV 432
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A+ + + I+ P +L + L+ G
Sbjct: 433 EEALKLLREAIRRELEPNQLSYTPLIHGF 461
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY LI L + ++ A + M ++ + PD YT +I GF++ +DA I
Sbjct: 519 PDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKI 578
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+E M + + + + ++KG ++ V
Sbjct: 579 FEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAV 611
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 5/148 (3%)
Query: 110 VAVLIELERQEETI-LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
VLI+ +E + A+K+F+ +R + +PD Y LI + G+++EA++ + +
Sbjct: 219 CTVLIDATCKESGVGQAMKLFNEMRNKGC-KPDVVTYNVLIKGFCKGGRLDEAIRFLKKL 277
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
PD ++ ++R G DAM + M++ P + F IL+ L LL
Sbjct: 278 PSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLL 337
Query: 229 RSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ + E+ P KH + P F L
Sbjct: 338 GKAL--NVLEMMP-KHGHTPNSRSFNPL 362
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+A Y ++ +L GK+ +AMQV + +PD T T +I K+ AM
Sbjct: 178 SPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMK 237
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M P+ + + +L+KG
Sbjct: 238 LFNEMRNKGCKPDVVTYNVLIKGFC 262
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD ++ L+R GK+ EAM+ + +++ + P++ Y +I G K + A++
Sbjct: 458 KPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAID 517
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
DM+ P E + L+KG+
Sbjct: 518 FLADMVAKGCKPTEATYTTLIKGI 541
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ +I+ + Y PD Y L+ AL + GK+++A+ + + + P +Y VI
Sbjct: 375 AIEYLEIMVSRGCY-PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVI 433
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
G LK G A+ + E+M P+ + ++ GL +R +K
Sbjct: 434 DGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMK 482
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
+ +V+ L R+ + A+K F + K+ +P+A+IY +I L ++ + + A+
Sbjct: 462 ITCTSVVGGLSREGKVREAMKFFHYL-KRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLA 520
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
M + P TYT +I+G +G DA + ++
Sbjct: 521 DMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNEL 557
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + ++ +L G+ +AM++ +M ++ P T+ +I + G A+N
Sbjct: 283 QPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALN 342
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E M K P F L++G
Sbjct: 343 VLEMMPKHGHTPNSRSFNPLIQGFC 367
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + LI L + G + +A+ V E M K P+S+++ +I+GF A+
Sbjct: 319 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E M+ P+ + + ILL L
Sbjct: 379 LEIMVSRGCYPDIVTYNILLTALC 402
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y +I L + GK A+++ E M + L PD T T V+ G ++G +AM
Sbjct: 423 SPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMK 482
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + + P + ++ GL
Sbjct: 483 FFHYLKRFAIRPNAFIYNSIITGLC 507
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 111 AVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+L+E R + A IF D++ + PD + LI +R G +++A+ + M+
Sbjct: 295 TLLVESCRNNNFLEAKDIFSDMLHR--GVSPDLISFSSLIGVSSRNGHLDQALMYFRDMK 352
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
L PD+ YT +I G+ ++G ++A+ I + M++ + + + +L GL LL
Sbjct: 353 TSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLL- 411
Query: 230 SKVKKDFEELFPE 242
D LF E
Sbjct: 412 ----ADANALFDE 420
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F I+ +++ +PD Y LI +T +M +A ++W M +FP+ +Y ++
Sbjct: 449 ALSLFGIMTQKN-IKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILV 507
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G ++A ++++MI+ P + ++KG
Sbjct: 508 NGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKG 544
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI R G M+EA+++ + M ++ D Y ++ G K ADA +
Sbjct: 358 PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANAL 417
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M++ P+ F L+ G
Sbjct: 418 FDEMVERGVVPDFCTFTTLIHG 439
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 127 KIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K F +I K + QPD Y ++ R G+M EA + M + + PD TYT +I
Sbjct: 588 KAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLI 647
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEE 212
G++ + +A +++M++ P++
Sbjct: 648 NGYVSQDNLKEAFRFHDEMLQRGFVPDD 675
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI + G M +A+ ++ M ++++ PD TY +I GF K A +
Sbjct: 428 PDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANEL 487
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +MI P + + IL+ G
Sbjct: 488 WNEMISRKIFPNHISYAILVNG 509
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ Y LI + M++A + M + L PD TY ++ GF + G +A I
Sbjct: 568 PDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELI 627
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
MI+ P+ + L+ G + L+
Sbjct: 628 LRKMIERGIDPDRSTYTTLINGYVSQDNLK 657
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ G ++EA ++W+ M ++ + P T VI+G+ + G + A
Sbjct: 498 PNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEF 557
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
MI P+ + + L+ G +
Sbjct: 558 LGKMISEGVGPDSITYNTLINGFV 581
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y ++ L + + +A +++ M + + PD T+T +I G K+G+ A++++
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
M + P+ + + IL+ G
Sbjct: 454 GIMTQKNIKPDIVTYNILIDGFC 476
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 11/114 (9%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
+M I + QEE + A + PD Y + AL + G EA +
Sbjct: 470 EMKIADTSVAFSMQEEMLAA-----------GFPPDVITYNVFVHALCQQGNFEEACDLL 518
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
E+M + L PD TYT +I GF+K+G A ++ +M+ P + + +L+
Sbjct: 519 ENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLI 572
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD ++ +D P Y LI L G ++ A+++ + M + LFPD TYT ++
Sbjct: 374 AFLLFDELKCRDLV-PTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILV 432
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K G + A + +M+ P+ + + G
Sbjct: 433 NGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVG 469
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 8/131 (6%)
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
T + ++ D+++ + + PD + L+ RTG ++EA +++ ++ DL P TY
Sbjct: 337 TGVRLRFSDMLKSK--FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYN 394
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF- 240
+I G G A+ + ++M P+ + IL+ G + S + F E+
Sbjct: 395 TLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYV-SMARGFFNEMLS 453
Query: 241 ----PEKHAYD 247
P++ AY+
Sbjct: 454 KGLKPDRFAYN 464
Score = 40.0 bits (92), Expect = 0.92, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 39/78 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I L T +M+EA + ++ M ++ + P+ +YT +I G +A+ +Y +M+
Sbjct: 603 YNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREML 662
Query: 205 KSPDPPEELPFRILLKGL 222
P+ + LK L
Sbjct: 663 DRKIQPDSFTHSVFLKNL 680
Score = 40.0 bits (92), Expect = 1.0, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L++ G++ +A + E M L + TY +I GF + G +A ++
Sbjct: 248 PNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDL 307
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M+ P + L+ GL
Sbjct: 308 VEEMVNRRAFPTLSTYNTLMYGL 330
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 36/68 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y ++ + + G++++A+++ M++ +P+ TY ++ G K G A
Sbjct: 212 KPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKG 271
Query: 199 IYEDMIKS 206
+ E+M+ S
Sbjct: 272 LIEEMLNS 279
Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 33/80 (41%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
AY Y LI + G EA + E M FP TY ++ G K +
Sbjct: 285 AYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFS 344
Query: 202 DMIKSPDPPEELPFRILLKG 221
DM+KS P+ + F LL G
Sbjct: 345 DMLKSKFTPDIVSFNSLLYG 364
Score = 37.0 bits (84), Expect = 8.4, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ + G ++ A + M + L PD Y I G +K + A ++
Sbjct: 423 PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSM 482
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M+ + PP+ + + + + L
Sbjct: 483 QEEMLAAGFPPDVITYNVFVHAL 505
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 49/88 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ PD Y ++ R+ ++EA++V M ++ + PD+ TY+ +I+GF +
Sbjct: 442 KEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRT 501
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A ++YE+M++ PP+E + L+
Sbjct: 502 KEACDLYEEMLRVGLPPDEFTYTALINA 529
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + P Y LI TGKM +A+ V E M+++ L PD +Y+ V+ GF + +
Sbjct: 409 NGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDE 468
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD-FEELF 240
A+ + +M++ P+ + + L++G R+K D +EE+
Sbjct: 469 ALRVKREMVEKGIKPDTITYSSLIQGFCEQR--RTKEACDLYEEML 512
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI ++ + G MN AM+ + MR L P+ +TYT ++ GF + G +A +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M + P + + L+ G
Sbjct: 403 LREMNDNGFSPSVVTYNALING 424
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + EA ++E M + L PD TYT +I + +G A+
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ +M++ P+ + + +L+ GL
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGL 565
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ ++ G MNEA +V M P TY +I G G DA+ +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
EDM + P+ + + +L G
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFC 461
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L R G+M E V M + D TY +I+G+ K+G+ A+
Sbjct: 272 EPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M++ P + + L+ +
Sbjct: 332 MHAEMLRHGLTPSVITYTSLIHSMC 356
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
LI G M EA QV+ESM ++ PD Y +I G + G A +Y++M+KS
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKS 669
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI A G + +A+Q+ M ++ + PD TY+ +I G K +A +
Sbjct: 518 PDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ P ++ + L++
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENC 600
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ P+ Y LI + ++++AM ++E M + +L P+ TY +I
Sbjct: 338 ADKVFDTMVRKGC-APNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLI 396
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G G DA+ ++ +M+ S P+ + +RILL
Sbjct: 397 HGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILL 431
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G A+++ SM +++ P+ TY +I
Sbjct: 163 ALHLFDKMVGEG-FQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTII 221
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A+NI+ +MI P + ++ GL
Sbjct: 222 DCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLC 260
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + LI L GK+ EA+ +++ M E P+ TY +I G K G+ A+
Sbjct: 140 HQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAI 199
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ M++ P + + ++ L
Sbjct: 200 RLLRSMVQKNCEPNVITYNTIIDCL 224
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + R G++ A ++ S+ + L PD TYT +I G G A+A +
Sbjct: 457 PDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKL 516
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M P++ + ++ +G L
Sbjct: 517 FREMNTDGCSPDDCTYNLITRGFL 540
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L+ L +T +++AM + +++ +L PD Q+Y VI G + G A ++
Sbjct: 422 PDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDL 481
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + P+ + I++ GL LL ++ K F E+
Sbjct: 482 FSSLSSKGLHPDVWTYTIMINGLCLQGLL-AEATKLFREM 520
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L ++ +A + D++ Q +PD Y L+ +M+EA +V+++M ++ P
Sbjct: 294 LCKEGMVTIAHDVVDVM-IQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAP 352
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ +Y+ +I G+ K AM ++E+M + P + + L+ GL LR +
Sbjct: 353 NVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAI 409
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y +I L G + EA +++ M + PD TY + RGFL++ A+
Sbjct: 491 HPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQ 550
Query: 199 IYEDMI 204
+ ++M+
Sbjct: 551 LLQEML 556
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y +I + +++ V + K PD+ T+T +IRG +G +A+++
Sbjct: 107 SDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHL 166
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFE 237
++ M+ P + + L+ GL LLRS V+K+ E
Sbjct: 167 FDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCE 211
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 39/89 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ Y +I L + ++NEA+ ++ M + + P+ TY +I G K
Sbjct: 207 QKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWK 266
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ +M+ S P + F L+ L
Sbjct: 267 HVATLMNEMVDSKIMPNVVIFTTLVDALC 295
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ I+ L+ AL + G + A V + M + + PD TYT ++ G +A +
Sbjct: 282 PNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKV 341
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M++ P + + L+ G
Sbjct: 342 FDTMVRKGCAPNVISYSTLING 363
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 127 KIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ F ++++ D + PD Y L+ R GK+ EA Q+ + M++ + PD +Y +I
Sbjct: 479 RAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLI 538
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G DA + ++M+ + P L + L++GL
Sbjct: 539 SGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLC 577
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 44/88 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q+ PD ++ LI G ++ A Q+ + M + PD TY +++G+ ++G
Sbjct: 453 QQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKV 512
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A + ++M + P+ + + L+ G
Sbjct: 513 EEARQLLDEMKRRGIKPDHISYNTLISG 540
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI L + +M EA ++ +++E L PD + +I G +G+ A
Sbjct: 423 QPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQ 482
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ ++M P+E+ + L++G
Sbjct: 483 LLKEMDNMKVLPDEITYNTLMQG 505
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I GK A ++++M+ + L PD TY I G K+G +A
Sbjct: 248 KPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASG 307
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M++ P + + L+ G
Sbjct: 308 LICKMLEGGLVPNAVTYNALIDG 330
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD Y Y I L + G++ EA + M + L P++ TY +I G+ G
Sbjct: 278 KDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDL 337
Query: 194 ADAMNIYEDMI 204
A ++MI
Sbjct: 338 DKAYAYRDEMI 348
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y I AL G+M +A + + MR++ + PD+ T+ +I G+ + G A + ++M+
Sbjct: 359 YNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV 418
Query: 205 KSPDPPEELPFRILL 219
P + + L+
Sbjct: 419 GKGIQPTLVTYTSLI 433
Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 41/89 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +PD Y LI ++ G M +A +V + M P TY +I+G K+
Sbjct: 523 KRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEG 582
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A + ++M+ P++ + +++ +
Sbjct: 583 EHAEELLKEMVSKGITPDDSTYLSIIEAM 611
>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 721
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y L+ L R GK+ A + M K+ DL PD TYT +IRG+ + +A+
Sbjct: 259 PDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEAL 318
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+I E+M P + + L+KGL
Sbjct: 319 DILEEMNGRGLKPNIVTYNTLIKGLC 344
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+VL+ L ++ T +A +++D + K +PD Y Y LI + ++E ++ M
Sbjct: 195 SVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTS 254
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD--PPEELPFRILLKG 221
D PD TY ++ G + G A N+ M K P+ + + L++G
Sbjct: 255 FDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRG 307
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
+VK+F+ + K P + +++ L + G+ N A +V++ M K + PD+ TY +
Sbjct: 174 SVKLFENM-KLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEMLKTYGVKPDTYTYNIL 232
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDF 236
IRGF K+ + +++M P+ + + L+ GL + H L+ KK
Sbjct: 233 IRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKIKVAHNLVNGMSKK-C 291
Query: 237 EELFPEKHAY 246
++L P+ Y
Sbjct: 292 KDLSPDVVTY 301
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA + LI + G ++EA +V+E+M+K ++ DS +Y+ +IR + G A +
Sbjct: 367 PDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEML 426
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
++++ + ILL P PL S
Sbjct: 427 FDELFEK---------EILLSSYGPKPLAAS 448
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ LI + G E+++++E+M+ + P T+ V+ LK G A +Y++M+
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEML 217
Query: 205 KSPD-PPEELPFRILLKGLLPHPLL 228
K+ P+ + IL++G + ++
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKNSMV 242
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ E A K F+ ++KQ +P+ Y LI L GK+ EA+ +W+ M L P+
Sbjct: 285 KDENVAAAKKAFEEMQKQGL-KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNI 343
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
TY +I GF K +A +++D+ K P + F ++ ++
Sbjct: 344 VTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMM 394
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA---DAMNIYEDMIK 205
I L R GK+N+A E M+ + P+ TY ++ G+ K GS A ++M+
Sbjct: 207 INGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLA 266
Query: 206 SPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ P E+ F L+ G + + KK FEE+
Sbjct: 267 NKICPNEVTFNTLIDGFCKDENV-AAAKKAFEEM 299
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/94 (21%), Positives = 44/94 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + + A + +E M+K+ L P+ TY +I G +G +A+++
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++ M+ P + + L+ G +++ K
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATK 364
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR---TGKMNEAMQVWESMRKE 171
+L + E+ I +K + I P+ Y L+ + GKM +A + M
Sbjct: 215 KLNKAEDAIEDMKAWGI-------SPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLAN 267
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
+ P+ T+ +I GF KD + A A +E+M K P + + L+ GL + L
Sbjct: 268 KICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEA 327
Query: 232 V 232
+
Sbjct: 328 I 328
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI L + K A ++ M L P+ TY ++ G+ +G A+N
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALN 504
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYD 247
+ M K P + + +L+KG + LL ++K L P + YD
Sbjct: 505 VRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKG---LNPNRTTYD 557
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 4/112 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L + KM+EA +++ M + L P+ T+T +I G K G A+
Sbjct: 203 HPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALE 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK----VKKDFEELFPEKHAY 246
IY+ M++ P+ + + L+ GL L+ V+ + L P+K Y
Sbjct: 263 IYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITY 314
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + +Q Y PD Y LI L R G + +A + M + L PD TYT +
Sbjct: 259 LALEIYKQMLRQG-YSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + + MI+ +++ + L+ GL
Sbjct: 318 IDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLC 357
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 14/120 (11%)
Query: 128 IFDIIRKQDWYQ--------------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
I+ + RK D Q PD Y LI + G + A ++ + M +E +
Sbjct: 283 IYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESI 342
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
D YT +I G ++G DA + +M+ PE + +++ G +++ K
Sbjct: 343 RLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASK 402
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/82 (21%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI ++G+++ A+++++ M ++ PD TY +I G + G A ++
Sbjct: 239 PNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+M P+++ + L+ G
Sbjct: 299 IVEMSMKGLKPDKITYTTLIDG 320
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + G+ +A ++ M L P++ TYT +I GF K G A +
Sbjct: 345 DDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLL 404
Query: 201 EDMIKSPDPP 210
++M + P
Sbjct: 405 KEMQRDGHVP 414
>gi|302143623|emb|CBI22376.3| unnamed protein product [Vitis vinifera]
Length = 554
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ FD + + PD Y L+ AL + G ++EA+ + S+ P TY VI
Sbjct: 394 AINFFDQMVSHNCL-PDIITYNTLLAALCKEGMVDEALHLLHSLNDTRCSPGLITYNIVI 452
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G AM +Y +MI+ P+++ R L GL
Sbjct: 453 DGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGL 490
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 111 AVLIEL-ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLIEL + T+ A+++ + + + Y PD Y L+ + GK + + ++
Sbjct: 274 TVLIELVCKHCGTVQAMEVLEDMAIEGCY-PDIVTYNSLVNYTCKQGKYEDTALIIYNLL 332
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ P++ TY ++ G + I M + PP + + IL+ GL + LL
Sbjct: 333 SHGMGPNTVTYNTLLHSLCTHGYWDEVDEILLIMNTTSQPPTVVTYNILINGLCKYGLL 391
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++++ LI+LE E +KI + PD Y L+ L + G + A+++ +
Sbjct: 169 INLIRGLIKLESTERATRVLKIMVM----SGGIPDIITYNMLVGGLCKKGLLKTAIELLD 224
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M PD+ TY ++R G A+ ++D ++ P + + +L++ + H
Sbjct: 225 EMSLSGCPPDAITYNTILRCMFDHGGFDQAIGFWKDQLRKGCPAYLITYTVLIELVCKH 283
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L + G ++ A+ ++ M + PD TY ++ K+G +A+++
Sbjct: 373 PTVVTYNILINGLCKYGLLDRAINFFDQMVSHNCLPDIITYNTLLAALCKEGMVDEALHL 432
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ + P + + I++ GL
Sbjct: 433 LHSLNDTRCSPGLITYNIVIDGL 455
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y +I LA+ G M +AM+++ M + PD T+ + G + DA+
Sbjct: 442 SPGLITYNIVIDGLAKKGCMEKAMELYGEMIERGFAPDDITHRTLFWGLFRLDLVEDALV 501
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I ++M K + FR ++ GL ++
Sbjct: 502 ILKEMNKRNQRIKNSAFRFVIHGLCAAGMI 531
>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580 [Vitis vinifera]
gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ Y+PD + Y +I + G M A Q+ + PD TY +I G +DG
Sbjct: 313 NEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDID 372
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
A+N++ + ++ P + L+KGL L+ +K
Sbjct: 373 RAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALK 411
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++ +P+ + L+ L++ G + +A+++ M + PD TY VI
Sbjct: 374 AINVFNEAMEKGL-KPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVI 432
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K G +DA N+ D I P+ F L+ G
Sbjct: 433 NGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D + + PD Y LI L + K+ EA M E PD TY +I
Sbjct: 270 AIRLLDGVGR--GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSII 327
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G +A I D P+E + L+ GL
Sbjct: 328 DGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLC 366
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 40/87 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ L + GK + M ++ M ++ P+ TY + F K +A+N
Sbjct: 492 SPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALN 551
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ E+M P+ + F L+KG +
Sbjct: 552 LIEEMQNKGLTPDVVNFGTLMKGFCDN 578
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ D I K + PD + + LI + K++ A+++ + M + PD TY ++ G
Sbjct: 448 VIDAIAK--GHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGL 505
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
K G D M ++ M++ P + + IL
Sbjct: 506 CKAGKYEDVMGTFKLMMEKGCVPNIITYNIL 536
>gi|255032627|gb|ACT99064.1| unknown [Lactuca sativa]
gi|255032629|gb|ACT99065.1| unknown [Lactuca sativa]
gi|255032633|gb|ACT99067.1| unknown [Lactuca sativa]
gi|255032635|gb|ACT99068.1| unknown [Lactuca sativa]
gi|255032643|gb|ACT99072.1| unknown [Lactuca sativa]
gi|255032645|gb|ACT99073.1| unknown [Lactuca sativa]
gi|255032647|gb|ACT99074.1| unknown [Lactuca sativa]
gi|255032653|gb|ACT99077.1| unknown [Lactuca sativa]
gi|255032655|gb|ACT99078.1| unknown [Lactuca sativa]
gi|255032657|gb|ACT99079.1| unknown [Lactuca sativa]
gi|255032659|gb|ACT99080.1| unknown [Lactuca sativa]
gi|255032661|gb|ACT99081.1| unknown [Lactuca sativa]
gi|255032671|gb|ACT99086.1| unknown [Lactuca sativa]
gi|255032677|gb|ACT99089.1| unknown [Lactuca sativa]
gi|255032679|gb|ACT99090.1| unknown [Lactuca sativa]
gi|255032685|gb|ACT99093.1| unknown [Lactuca sativa]
gi|255032687|gb|ACT99094.1| unknown [Lactuca sativa]
gi|255032697|gb|ACT99099.1| unknown [Lactuca sativa]
gi|255032709|gb|ACT99105.1| unknown [Lactuca sativa]
gi|255032737|gb|ACT99119.1| unknown [Lactuca sativa]
gi|255032741|gb|ACT99121.1| unknown [Lactuca sativa]
Length = 100
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 66 WRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE 120
WR KK +GKE L + LKR + +L FIK+HV RLLK D+V+VL E +RQ+
Sbjct: 43 WRRKKELGKEGLIIAKELKRLQSSPLRLDHFIKSHVSRLLKSDLVSVLFEFQRQD 97
>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
Length = 789
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D +PD Y+Y ++ LA GK+ +A+++ M + + PD+ Y +I+GF G +
Sbjct: 329 EDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLS 388
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+A ++ ++ + P + IL+ G + R+ + +D +E+F E
Sbjct: 389 EARSLQLEISRHDCFPNVKTYSILISG-----MCRNGLTRDAQEIFNE 431
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI G ++EA + + + D FP+ +TY+ +I G ++G DA I
Sbjct: 369 PDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEI 428
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M K P + F L+ GL
Sbjct: 429 FNEMEKLGCYPSAVTFNSLIDGLC 452
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ F +R D PD Y Y ++ L + + A+ V+ M K + P+ T++ +I
Sbjct: 145 AMETFGSMRDFDC-TPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILI 203
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
G K G+ DA++++++M + P+ + +++ G L RSK D LF
Sbjct: 204 DGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISG-----LCRSKRVDDAYRLF 254
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L+R +E +++F+ +D Y D Y LI L R + + ++ M ++++ P
Sbjct: 279 LDRVDEAFSLLRLFE----KDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKP 334
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
D YT +++G + G DA+ + +M +S P+ + + +L+KG LL
Sbjct: 335 DVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQ 394
Query: 236 FE----ELFPEKHAY 246
E + FP Y
Sbjct: 395 LEISRHDCFPNVKTY 409
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+LA+ ++ + K + P+ + LI L ++G + +A+ +++ M + + PD+ TY
Sbjct: 178 LLALTVYTRMMKLNCL-PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCV 236
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
VI G + DA +++ M S P+ + LL G
Sbjct: 237 VISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFC 277
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y Y L+ + G N A +++ M+ + L PD+ TY +I G L+ DA +
Sbjct: 522 PGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKV 581
Query: 200 YEDMIKSPDPPEELPFRILL 219
++ M K+ P+ +R ++
Sbjct: 582 FDQMEKNGCTPDAAVYRTMM 601
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI + G ++AM+ + SMR D PD TY ++ ++ A+ +Y M+K
Sbjct: 132 LIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLN 191
Query: 208 DPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
P F IL+ G L +S KD LF E
Sbjct: 192 CLPNVATFSILIDG-----LCKSGNVKDALHLFDE 221
>gi|399216092|emb|CCF72780.1| unnamed protein product [Babesia microti strain RI]
Length = 1520
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 52/97 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + ++K +P+ IY LI +T ++N+A+ ++ +M E + P++ TY +I
Sbjct: 997 ALSLLKDMKKNSNIKPNTIIYSTLIKGFGQTKQLNKALNIYLTMLDEGVVPNTITYNSII 1056
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G A N+ EDM+ + P+ + F ++KG
Sbjct: 1057 DACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKG 1093
Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I A AR G MN+A + E M ++ PD T++ VI+G+ + ++ +
Sbjct: 1047 PNTITYNSIIDACARVGDMNKAANLLEDMLNNNIEPDLITFSTVIKGYCVQSNMDRSLQL 1106
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M + P+ + + LL G
Sbjct: 1107 LRAMSERGIKPDGILYNSLLDG 1128
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + +I M+ ++Q+ +M + + PD Y ++ G +K G P
Sbjct: 1081 EPDLITFSTVIKGYCVQSNMDRSLQLLRAMSERGIKPDGILYNSLLDGCVKSGRPWLCQQ 1140
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
++++M ++ P IL+K
Sbjct: 1141 LWDEMQENGIAPSNFTLTILIK 1162
Score = 37.0 bits (84), Expect = 7.0, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D + ++ Q + ++Y L+ A GK A+ V+ M + PDS+TY +I
Sbjct: 1173 AFQLMDELPRKYNIQTNTHVYTCLMSACITNGKYKMALDVFNCMNGNGIVPDSKTYETII 1232
Query: 185 RGFLK 189
G +K
Sbjct: 1233 FGAIK 1237
>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
Length = 654
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+V+ L +Q A ++FD + + + P+ + LI + G++++ ++++ M +
Sbjct: 517 SVIHGLCKQSRLDEATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 575
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ ++ TY +I GF K G+ A++I+++M+ S P+ + R +L GL
Sbjct: 576 RGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ +PD Y LI L GK EA +++E M + PD+ TY VI G K +
Sbjct: 471 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDE 530
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
A +++ M P + F L+ G
Sbjct: 531 ATQMFDSMGSKSFSPNVVTFTTLING 556
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+T +I G+ K G D + +
Sbjct: 510 PDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 569
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L+ G
Sbjct: 570 FCEMGRRGIVANAITYITLIHG 591
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI R ++++ +++ M + L ++ TYT +I GF + G A +
Sbjct: 358 SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQD 417
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ ++M+ S P + LL GL + L KD E+F
Sbjct: 418 LLQEMVSSGVCPNVVTCNTLLDGLCDNGKL-----KDALEMF 454
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A + GK EA ++++ M + P + TY+ +I GF K A +
Sbjct: 288 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEH 347
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P+ + F L+ G
Sbjct: 348 MFYLMATKGCSPDIITFNTLIAG 370
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL---- 173
++ D+ QD Q P+ L+ L GK+ +A++++++M+K +
Sbjct: 407 CQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 466
Query: 174 -------FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
PD QTY +I G + +G +A +YE+M P+ + + ++ GL
Sbjct: 467 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQS 526
Query: 227 LL 228
L
Sbjct: 527 RL 528
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/114 (20%), Positives = 55/114 (48%), Gaps = 6/114 (5%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIY-----KDLIIALARTGKMNEAMQVWESM-R 169
+ + +T+ A+ + + + +P+ I+ +I +G+ +EA Q+ + M
Sbjct: 224 MCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLE 283
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ + PD TY +I F+K+G +A +Y++M+ P + + ++ G
Sbjct: 284 RKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFC 337
>gi|255570073|ref|XP_002525999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534731|gb|EEF36423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 557
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ + PD ++Y I L R GK+ EA +V M +E + D TY+ +I G G
Sbjct: 344 ESGFVPDKFVYTSWIAELCRQGKIVEAFKVKNKMVEEGIDLDLLTYSSLIFGLANKGLMI 403
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A +++DM+K P+ + F IL++G L
Sbjct: 404 EAKQLFDDMLKRGIIPDSMVFDILIRGYL 432
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
+ EL RQ + + A K+ + + ++ D Y LI LA G M EA Q+++ M K
Sbjct: 358 IAELCRQGKIVEAFKVKNKM-VEEGIDLDLLTYSSLIFGLANKGLMIEAKQLFDDMLKRG 416
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ PDS + +IRG+LK +P +++E+M
Sbjct: 417 IIPDSMVFDILIRGYLKQDNPVAISHLHEEM 447
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y I L + G ++ + ++ MRK+ + P+ +T +I G+ K G+ A +
Sbjct: 74 PNVITYGTWIDTLCKVGDLDTGYKFFKEMRKDGIVPNLIAFTCLIDGYSKIGNLDFAYQL 133
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
Y+DM KS P + L+ G +L
Sbjct: 134 YKDMCKSMHLPNVYTYAALINGFCKRGML 162
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ +Y +I + G ++ AM+ + MRKE D Y VI G + +G + +
Sbjct: 179 PNSTVYTSIIDGHFKKGNIDVAMKYFSEMRKESFRLDIVAYGVVISGLVNNGRLDKVLEV 238
Query: 200 YEDMIKSPDPPEELPFRILL 219
EDM+++ P+++ L+
Sbjct: 239 MEDMVRNGLAPDKVVLTTLM 258
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 42/89 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y LI + G + A + M + + P+S YT +I G K G+ AM
Sbjct: 144 PNVYTYAALINGFCKRGMLERAEWFFLKMLEVGIMPNSTVYTSIIDGHFKKGNIDVAMKY 203
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ +M K + + + +++ GL+ + L
Sbjct: 204 FSEMRKESFRLDIVAYGVVISGLVNNGRL 232
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q + A+K+F + KQ +P+ Y LI RTG + A + +E MR L P+
Sbjct: 567 KQNDLHNALKLFGQMVKQKC-KPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNV 625
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +I F K+G + A + +E M+ + P ++ F L+ GL
Sbjct: 626 VTYTILIGCFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGL 670
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I + G MN+A+ + M+ D PD TY+ +I G++K +A+ +
Sbjct: 518 PGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKL 577
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ M+K P + + L+ G S+ +K FEE+
Sbjct: 578 FGQMVKQKCKPNVVTYTSLINGFC-RTGDSSRAEKTFEEM 616
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + Y +I + ++ A++++ M K+ P+ TYT +I GF + G + A
Sbjct: 551 HSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAE 610
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
+E+M S P + + IL+
Sbjct: 611 KTFEEMRSSGLKPNVVTYTILI 632
Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI R GK++EA ++ E K L P+ +YT +I + K G A +
Sbjct: 342 EPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFD 401
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M + P + + + L+ GL+
Sbjct: 402 LFIGMTEKGHPLDLVAYGALVHGLV 426
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 45/93 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA++ L+ R GK++EA +++E + + P Y +I+G+ K G DA+
Sbjct: 484 DAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFGMMNDALTCV 543
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ M P+E + ++ G + L + +K
Sbjct: 544 QRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALK 576
Score = 37.4 bits (85), Expect = 6.6, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA +Y L+ L + G+++ A + M ++L D+ ++ GF++ G +A +
Sbjct: 448 PDANVYNVLMNGLCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKL 507
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E I P + + ++KG
Sbjct: 508 FELTIAKGMDPGVVGYNAMIKG 529
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y LI ++ + G MN A + + MR L P+ +TYT ++ GF + G +A
Sbjct: 342 SPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYR 401
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ ++MI + P + + L+ G
Sbjct: 402 VLKEMIDNGFSPSVVTYNALING 424
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 123 ILAVKIFDIIR-----KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+A K+ D I K+ PD Y ++ R+ ++EA++V M + + PD+
Sbjct: 426 CIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDT 485
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I+GF + +A +++++M++ PP+E + L+
Sbjct: 486 ITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINA 529
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + P Y LI GKM +A+ V E M+++ L PD +Y+ V+ GF + +
Sbjct: 409 NGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDE 468
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD-FEELF 240
A+ + M+ P+ + + L++G R+K D F+E+
Sbjct: 469 ALRVKRKMVAKGIKPDTITYSSLIQGFCEQR--RTKEACDLFDEML 512
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + EA +++ M + L PD TYT +I + +G A+
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQ 541
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ +M++ P+ + + +L+ GL
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGL 565
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ ++ G MNEA +V + M P TY +I G G DA+ +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAV 437
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
EDM + P+ + + +L G
Sbjct: 438 LEDMKEKGLTPDVVSYSTVLSGFC 461
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L R G+M E V M K D TY +I+G+ K+G+ A+
Sbjct: 272 EPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALV 331
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M++ P + + L+ +
Sbjct: 332 MHAEMLRHGLSPSVITYTSLIHSMC 356
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206
LI G M EA QV+ESM +++ PD Y +I G + G A ++Y++M+KS
Sbjct: 610 SLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKS 669
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI A G + +A+Q+ M ++ + PD TY+ +I G K +A +
Sbjct: 518 PDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRL 577
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ P ++ + L++
Sbjct: 578 LLKLFYEESVPSDVTYHTLIENC 600
>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
Length = 882
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ + ++ + L R+G+M EA ++++ M L PD YT ++ GF K G +DA N
Sbjct: 329 EENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFN 388
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I ++M + + + + +L+ GL
Sbjct: 389 IAQEMTEKSSGFDVVAYNVLINGLF 413
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI A ++ + +A+ +++ M + L PD TYT ++ G K G +A +
Sbjct: 84 EPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKS 143
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + P + L+ L
Sbjct: 144 VFREMEEVGVVPNRFSYATLIDSLF 168
Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L+ + G M E ++++ M + P ++TY +I F K + A +
Sbjct: 644 PNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKEL 703
Query: 200 YEDMIKSPDPPEELPFRILLKG---LLPHPLLRSKVKKDFE 237
++M PP + IL+ G L P L +K+ ++
Sbjct: 704 MQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQ 744
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G +N+ + + M ++ +FP+ Y+ ++ G+ K G +AM++
Sbjct: 225 PNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDV 284
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M++ P + L+ G
Sbjct: 285 MRKMVQRNILPNVFVYGTLIDG 306
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L ++GK+ EA V+ M + + P+ +Y +I K+G+ A+A +
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVL 179
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
M+ + F +++ L L ++ + + E++F
Sbjct: 180 QGRMVV-----RGIGFDVVVYTALMDGLFKAGMANNAEDMF 215
Score = 37.4 bits (85), Expect = 6.1, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + GK E+ MR+ L PDS T+ +I + K+G+ +A+ +
Sbjct: 401 DVVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M P + IL++ L
Sbjct: 460 NEMKSYGLKPNSITCNILVQRL 481
Score = 37.0 bits (84), Expect = 7.2, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E AV++ + + K + PD Y L+ + G + A ++ + +L P+
Sbjct: 29 RNGEISRAVELLEGM-KTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNV 87
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +I + K DA+ +Y++M P+ + + ++ GL
Sbjct: 88 ITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132
>gi|413951889|gb|AFW84538.1| hypothetical protein ZEAMMB73_463361, partial [Zea mays]
Length = 423
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+++ + + P+ YK ++ L + G+ EA +VW M + PD+ TY +I
Sbjct: 288 AIKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMVANNHQPDTVTYGILI 347
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G A +Y DM+K+ + + L+KG
Sbjct: 348 HGLCRSGDVDSAARVYSDMVKAGLVLDVAVYNSLIKGFC 386
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD Y LI L R+G ++ A +V+ M K L D Y +I+GF K G +A
Sbjct: 336 HQPDTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVAVYNSLIKGFCKVGRTGEAW 395
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ D + + +++KGLL
Sbjct: 396 KFW-DSTGFSGIRQITTYNVMMKGLL 420
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Q DA Y L+ +TG +A++VWE + R P+ TY ++ G K G +A
Sbjct: 266 QADAVCYNALLSGCFKTGMFEKAIKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAG 325
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ M+ + P+ + + IL+ GL
Sbjct: 326 EVWSRMVANNHQPDTVTYGILIHGLC 351
Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/94 (20%), Positives = 46/94 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +L G ++ A+ ++ S+R+ + PD TY+ ++ G +K +A+++
Sbjct: 197 PNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLVKHDQLDNALDL 256
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M + + + LL G + +K
Sbjct: 257 LDEMPDYGVQADAVCYNALLSGCFKTGMFEKAIK 290
>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
Length = 795
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ + ++ + L R+G+M EA ++++ M L PD YT ++ GF K G +DA N
Sbjct: 329 EENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFN 388
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I ++M + + + + +L+ GL
Sbjct: 389 IAQEMTEKSSGFDVVAYNVLINGLF 413
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI A ++ + +A+ +++ M + L PD TYT ++ G K G +A +
Sbjct: 84 EPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKS 143
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + P + L+ L
Sbjct: 144 VFREMEEVGVVPNRFSYATLIDSLF 168
Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L+ + G M E ++++ M + P ++TY +I F K + A +
Sbjct: 644 PNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKEL 703
Query: 200 YEDMIKSPDPPEELPFRILLKG---LLPHPLLRSKVKKDFE 237
++M PP + IL+ G L P L +K+ ++
Sbjct: 704 MQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQ 744
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G +N+ + + M ++ +FP+ Y+ ++ G+ K G +AM++
Sbjct: 225 PNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDV 284
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M++ P + L+ G
Sbjct: 285 MRKMVQRNILPNVFVYGTLIDG 306
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L ++GK+ EA V+ M + + P+ +Y +I K+G+ A+A +
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVL 179
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
M+ + F +++ L L ++ + + E++F
Sbjct: 180 QGRMVV-----RGIGFDVVVYTALMDGLFKAGMANNAEDMF 215
Score = 37.4 bits (85), Expect = 6.2, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + GK E+ MR+ L PDS T+ +I + K+G+ +A+ +
Sbjct: 401 DVVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M P + IL++ L
Sbjct: 460 NEMKSYGLKPNSITCNILVQRL 481
Score = 37.0 bits (84), Expect = 7.2, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E AV++ + + K + PD Y L+ + G + A ++ + +L P+
Sbjct: 29 RNGEISRAVELLEGM-KTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNV 87
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +I + K DA+ +Y++M P+ + + ++ GL
Sbjct: 88 ITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132
>gi|242043100|ref|XP_002459421.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
gi|241922798|gb|EER95942.1| hypothetical protein SORBIDRAFT_02g004410 [Sorghum bicolor]
Length = 735
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ + +PD ++Y L+ + R G M+ ++VWE M K+ + PD+ Y ++ GF G
Sbjct: 300 RNEVCRPDVFVYTALVKTMVRRGYMDGCIRVWEEMEKDGVEPDTMAYATMVGGFCNTGMV 359
Query: 194 ADAMNIYEDM 203
+A ++++M
Sbjct: 360 EEAAELFKEM 369
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 10/122 (8%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D +PD Y ++ TG + EA ++++ MR + L Y +I G++ G
Sbjct: 335 EKDGVEPDTMAYATMVGGFCNTGMVEEAAELFKEMRSKGLLVARSVYASLIDGYVAAGRV 394
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAY 246
D + ++++ + + + L+ GL H L R ++ EEL P
Sbjct: 395 GDGCRLLKELVDAGSRADLGIYNTLISGLCGIGREDKAHNLFRIVLQ---EELMPSSDTV 451
Query: 247 DP 248
P
Sbjct: 452 SP 453
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 8/147 (5%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIEL-----ERQEETILAVKIFDIIRKQDW 137
L R+ + E + F + L L + ++ +L++ + + A+++FD ++++ +
Sbjct: 455 LARYAEKGEMVTFFGLVNKLAELGLPVIEMLVDFMKLFAGKDGRELKAMEVFDALKEKQY 514
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPADA 196
IY LI L + +++ ++E M+ F PDS TY+ +I F+ +G+ +A
Sbjct: 515 CSVG--IYNILIENLLKIKDRKKSLLLFEEMQSSVNFKPDSCTYSHMIPCFMDEGNVEEA 572
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y ++K P + L+KGL
Sbjct: 573 CSCYNTVMKENWIPSMSAYCALVKGLC 599
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F+ ++ ++PD+ Y +I G + EA + ++ KE+ P Y +++G
Sbjct: 539 LFEEMQSSVNFKPDSCTYSHMIPCFMDEGNVEEACSCYNTVMKENWIPSMSAYCALVKGL 598
Query: 188 LKDGSPADAMNIYEDMIKS-PDPPEELPFRILL 219
K G A+++ +D + + + P E + + +
Sbjct: 599 CKMGEINAAISLVKDCLGNVENGPTEFKYTLTI 631
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD + + QP + ++ ALA G + +++ MR E PD YT ++
Sbjct: 257 ALKLFDEM-SEGGVQPIPVTFAIVVRALAHAGMTDRLLEMIGRMRNEVCRPDVFVYTALV 315
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ ++ G + ++E+M K P+ + + ++ G ++ ++ ELF E
Sbjct: 316 KTMVRRGYMDGCIRVWEEMEKDGVEPDTMAYATMVGGFCNTGMV-----EEAAELFKE 368
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + PD Y LI L ++G + A ++ M + PD TY ++ GF K G+
Sbjct: 367 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNT 426
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A +++DM S P + + L+ GL
Sbjct: 427 DAACGVFDDMSSSHCSPNVVTYGTLISGLC 456
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 113 LIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
L ++ R EE I D++RK + PD Y LI L + + EA ++++ M
Sbjct: 210 LCKMGRLEEAI------DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAL 263
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L D+ YT +IRG L+ G A ++Y+ M P+ + ++ GL + +
Sbjct: 264 RGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGA 323
Query: 231 KVKKDFEELFPEKHAYDPPEEIFGKL 256
V+ F+ + E P E ++ L
Sbjct: 324 AVRI-FKSM--EARGLAPNEVVYSAL 346
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IF + + P+ +Y LI L + KM+ A+++ M+K PD+ TY +I
Sbjct: 324 AVRIFKSMEARGL-APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 382
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A +++M+++ P+ + IL+ G
Sbjct: 383 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFC 421
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + GK+ +A V+++M + PD T + +I G K G A+ I+
Sbjct: 269 DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 328
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ M P E+ + L+ GL K+ E L K A+ P+ I
Sbjct: 329 KSMEARGLAPNEVVYSALIHGLCK----ARKMDCALEMLAQMKKAFCTPDTI 376
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y L+ + G + A V++ M P+ TY +I G K A
Sbjct: 407 KPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASL 466
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M + PP+ + L+ GL
Sbjct: 467 YFQHMKERGCPPDSFVYSSLVDGLC 491
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ P Y L+ L + G++ EA+ + + PD TYT +I G K+ +
Sbjct: 194 NGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFE 253
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A ++++M + + + L++GLL
Sbjct: 254 AYKLFKEMALRGLVLDTVCYTALIRGLL 281
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+QP+ Y LI L + G ++EA+ + MR L P+ Q YT ++ G K+G +A
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEA 557
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++ +M+ +++ + LL G L
Sbjct: 558 VQLFNEMVHKGMSLDKVVYTALLDGYL 584
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + G +NEA+Q++ M + + D YT ++ G+LK G+ DA +
Sbjct: 536 PNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFAL 595
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
MI S + + + G ++ + ++ F E+ H P ++ L
Sbjct: 596 KAKMIDSGLQLDLFCYTCFISGFCNLNMM-PEAREVFSEMIG--HGIAPDRAVYNCL 649
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ + + + A + G + EAM+++ MR + + TYT +I G K G
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ + ++M++ P + + +L+ GL
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLC 374
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+ L R L ++F + P+ + + +I L + G++ EA ++ M++
Sbjct: 163 ILLRLARDRSGRLVRRLF-----EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEM 217
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
PD T+ +I G+ K G + + E+M +S + + + L+
Sbjct: 218 GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALIN 266
>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
Length = 542
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + + + P Y LII L G++ EA +VW+ M + P++ TY +I
Sbjct: 394 ARKLFDELERG--FLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALI 451
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+GF K G + ++++M+ P + ++ L+ L
Sbjct: 452 KGFCKIGKSNEGYALFKEMMSRGCTPSKFLYQALVDSL 489
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ P+ L+ L G +N A++V + M + PD TYT V+ + G A
Sbjct: 195 YITPNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGA 254
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+++D+I S P+ + +L+ G H
Sbjct: 255 QQLFDDIIASGRRPDATMYTVLIDGYCHH 283
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y +I A + K EA + M PD+ +V+ +DG +A
Sbjct: 302 QPNEVTYSVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANE 361
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
++ M+K PP+ L+ L +++ + +K F+EL
Sbjct: 362 MWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQ-EARKLFDEL 401
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 34/120 (28%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ------------------- 178
Y PD + ++ L + GK EA ++W M K+ + PD+
Sbjct: 336 YVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEAR 395
Query: 179 ---------------TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G ++G +A +++DM++ P + + L+KG
Sbjct: 396 KLFDELERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFC 455
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ A G + A Q+++ + PD+ YT +I G+ DA I
Sbjct: 233 PDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARI 292
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + P E+ + ++++
Sbjct: 293 MDEMGAAGVQPNEVTYSVVIEACC 316
>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 572
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
V +FD + ++ P Y LI + M++AM ++E M ++ L PD+ TY +I
Sbjct: 318 TVNVFDTMVRKGCV-PSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLI 376
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-PHPLLRSKVKKDFEE---LF 240
G G DA+ ++ +M+ P+ + +RIL L H L + V E L
Sbjct: 377 HGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLD 436
Query: 241 PEKHAY 246
P+ H Y
Sbjct: 437 PDIHIY 442
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +IY ++ + R G++ A ++ + + L PD +TYT +I G + G A+A +
Sbjct: 437 PDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKL 496
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M ++ P + ++ +G L
Sbjct: 497 FGEMDENGCSPNACTYNLITRGFL 520
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQP + LI L GK+ EA+Q+++ M E PD TY +I G K G+ + A+
Sbjct: 120 YQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAI 179
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
M + P + + ++ L
Sbjct: 180 RFLRSMEQRNCRPTVVVYSTIIDSLC 205
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L ++ + A + D++ + D +PD Y L+ +M + + V+++M ++ P
Sbjct: 274 LCKEGMVVKAHYVVDVMIQSDL-KPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVP 332
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235
+YT +I G+ K AM ++E+M + P+ + + L+ GL LR +
Sbjct: 333 SVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIA-- 390
Query: 236 FEELFPEKHAY 246
LF E Y
Sbjct: 391 ---LFHEMVVY 398
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ AL + G + +A V + M + DL PD TY ++ G +N+
Sbjct: 262 PDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNV 321
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE-----LFPEKHAYDP 248
++ M++ P + + L+ G ++ K FEE L P+ Y+
Sbjct: 322 FDTMVRKGCVPSVISYTTLINGYCKIQIM-DKAMGLFEEMSQQGLIPDTVTYNT 374
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 46/90 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q +P +Y +I +L + ++ EA+ ++ M + + P++ TY+ +I G G
Sbjct: 186 EQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHW 245
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ ++ MI P++L F L+ L
Sbjct: 246 KEAIRLFYAMIHRKIMPDQLTFNTLVDALC 275
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + Y LI L G EA++++ +M + PD T+ ++ K+G A
Sbjct: 226 SPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHY 285
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
+ + MI+S P+ + + L+ G LRS++ K
Sbjct: 286 VVDVMIQSDLKPDVVTYNSLMDG----HCLRSEMGK 317
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 36/67 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y +I L + G + EA +++ M + P++ TY + RGFL++ A+
Sbjct: 471 HPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQ 530
Query: 199 IYEDMIK 205
++++M+
Sbjct: 531 LFQEMLS 537
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L L + ++ EAM + + + +L PD Y+ V+ G + G A ++
Sbjct: 402 PDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDL 461
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + P+ + I++ GL LL ++ K F E+
Sbjct: 462 FSKLSSKGLHPDVRTYTIMINGLCQQGLL-AEASKLFGEM 500
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI + ++ A V + K P + T+T +IRG +G +A+ ++
Sbjct: 88 NTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLF 147
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ M P+ L + L+ GL
Sbjct: 148 DKMTGEGFQPDVLTYGTLINGLC 170
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ L +G+ N+A ++ M K + P+ TY+ ++ F+K+G +A
Sbjct: 222 RPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKE 281
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
I+E+M++ P+ + + L+ GL H
Sbjct: 282 IFEEMVRMSIDPDIVTYSSLINGLCLH 308
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD Y +I +L +T ++N+A+ ++ + ++ + P+ TYT ++ G G DA
Sbjct: 186 YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAA 245
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ DMIK P + + LL + + + + K+ FEE+ + + DP
Sbjct: 246 RLLRDMIKRKITPNVITYSALLDAFVKNGKVL-EAKEIFEEMV--RMSIDP 293
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 127 KIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
++ D+ + Q+++ PD + Y L+ L G + +A+ ++E M+K ++ D
Sbjct: 377 QVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIV 436
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
TYT VI+G K G DA ++ + P+ + + ++ GL L
Sbjct: 437 TYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 485
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD++ + + PD Y LI + ++ + M+++ M + L ++ TY +I
Sbjct: 314 ANQMFDLMVSKGCF-PDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+GF + G A + M P+ + ILL GL + LL
Sbjct: 373 QGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLL 416
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +++EA Q+++ M + FPD +Y +I GF K D M +
Sbjct: 293 PDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKL 352
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M + + + L++G
Sbjct: 353 FRKMSQRGLVNNTVTYNTLIQG 374
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+++ P+ Y L+ A + GK+ EA +++E M + + PD TY+ +I G
Sbjct: 250 DMIKRK--ITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCL 307
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A +++ M+ P+ + + L+ G
Sbjct: 308 HDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFC 341
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD +++ LI A A+ K+++AM V+ MR+ L P+ Y VI K GS DAM
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ GL
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGL 456
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EA ++ SM + PD
Sbjct: 493 KEGRVIESEKLFDLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ + DA+ ++++M+ S P + + I+L+GL
Sbjct: 552 VTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 597
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P + + L+ L
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYL 316
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +P+ Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 357
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 358 VEMHALLDLMVRNGIQPDHHVFNILI 383
Score = 40.0 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + Y +L+ L + EA+++ M R PD +Y V+ GF K+G A
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKA 220
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 221 YSTYHEMLDRGILPDVVTYSSIIAAL 246
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+QE+ A+ +F +R Q P+ Y +I L ++G +++AM +E M E L P+
Sbjct: 388 KQEKVDQAMLVFSKMR-QHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446
Query: 178 QTYTEVIRGF 187
YT +I G
Sbjct: 447 IVYTSLIHGL 456
Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ + G ++A + M + PD TY+ +I K + AM +
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + +L G
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHG 280
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + PD Y LI L ++G + A ++ M + PD TY +I GF K G+
Sbjct: 236 KKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNT 295
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A +++DM S P + + L+ GL
Sbjct: 296 DAACGVFDDMSSSRCSPNVVTYGTLISGLC 325
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IF + + P+ +Y LI L + KM+ A+++ M+K PD+ TY +I
Sbjct: 193 AVRIFKSMEARGL-APNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 251
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A A +++M+++ P+ + IL+ G
Sbjct: 252 DGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFC 290
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 113 LIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
L ++ R EE I D++RK + PD Y LI L + + EA ++++ M
Sbjct: 79 LCKMGRLEEAI------DLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMAS 132
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L D+ YT +IRG L+ G A ++Y+ M P+ + ++ GL + +
Sbjct: 133 RGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGA 192
Query: 231 KVKKDFEELFPEKHAYDPPEEIFGKL 256
V+ F+ + E P E ++ L
Sbjct: 193 AVRI-FKSM--EARGLAPNEVVYSAL 215
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + GK+ +A V+++M + PD T + +I G K G A+ I+
Sbjct: 138 DTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIF 197
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ M P E+ + L+ GL K+ E L K A+ P+ I
Sbjct: 198 KSMEARGLAPNEVVYSALIHGLCK----ARKMDCALEMLAQMKKAFCTPDTI 245
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y LI + G + A V++ M P+ TY +I G K A
Sbjct: 276 KPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASL 335
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
Y+ M + PP+ + L+ GL
Sbjct: 336 YYQHMKERGCPPDSFVYSSLVDGLC 360
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
QE L KI + P Y L+ L + G++ EA+ + + PD
Sbjct: 51 QEAVALMEKI-----TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 105
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT +I G K +A ++++M + + + L++GLL
Sbjct: 106 TYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL 150
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
L + R +E AV +F+ IRK+ P Y Y +I AL ++GK+NE V++ M
Sbjct: 393 LCKANRVDE---AVSLFNAIRKEGMPHP--YAYNSIISALIKSGKVNEGQAVYQEM 443
>gi|242084176|ref|XP_002442513.1| hypothetical protein SORBIDRAFT_08g021140 [Sorghum bicolor]
gi|241943206|gb|EES16351.1| hypothetical protein SORBIDRAFT_08g021140 [Sorghum bicolor]
Length = 157
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMN 159
++ L+ +IV+ LI L R V + D+ D P+++I+ LI A A G ++
Sbjct: 22 MKGLRPNIVSYLILLNRYATKGCLVDMTDLFNLMLGDSIAPNSHIFSVLIKAYANCGMLD 81
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
A ++ MR++ + P+ TY VI + G DA+ + M+ P + L+
Sbjct: 82 RATIIFNEMREQGVKPNVVTYLTVIAALCRIGKMDDAVEKFNQMVDQGVAPHMSTYCCLI 141
Query: 220 KGLLPH-PLLRSK 231
+G H LL++K
Sbjct: 142 QGFCIHGGLLKAK 154
>gi|242058007|ref|XP_002458149.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
gi|241930124|gb|EES03269.1| hypothetical protein SORBIDRAFT_03g027690 [Sorghum bicolor]
Length = 795
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L R ++ A+ +FD++ D PD + Y LI L++ K++EA+ +W+ M++
Sbjct: 370 VIKGLLRNKQWEDAIALFDLV--VDTGVPDVFTYGCLIHWLSKHHKVHEAVNLWDKMKEA 427
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P T ++ G+ + G +A+ +Y +M PP E+ + L+KG +
Sbjct: 428 GVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPPNEVTYTTLMKGYI 479
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
F ++ +D P+ +Y + M EA + + SM K+ + D++ YT +I GF
Sbjct: 630 FLVLLLKDGLTPNVTVYNSFVTGYKNLKMMAEASKFYYSMIKQRIAADTEIYTTLIDGFS 689
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G+ A A+ +Y +M+ + + P++ F L GL
Sbjct: 690 KVGNVAFALELYSEMLANHNIPDDKTFTALTHGL 723
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA DL++A AR +A+ +++ MR + + D++ Y V+R + DA+ +
Sbjct: 151 PDAKSRTDLLVATARGASAADALTLFDEMRCKGYYADAKMYDVVMRACVVGRMHGDAVRL 210
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M + P+E + I + GL
Sbjct: 211 FDEMAGAGVKPDERVYAITITGL 233
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L L R+G ++ A ++ + M + D+ P++ TY +I ++DG +A +
Sbjct: 711 PDDKTFTALTHGLCRSGDIDGAKRLLDDMTRLDVCPNTVTYNMLINAHIRDGKLQEAFQL 770
Query: 200 YEDMIKSPDPPEELPFRIL 218
++ M+ S P++ + I
Sbjct: 771 HDKMLSSGVVPDDTTYNIF 789
Score = 43.9 bits (102), Expect = 0.062, Method: Composition-based stats.
Identities = 39/166 (23%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMD-----IVAVLIELERQEETILAVKIFDIIRK 134
I GL + +D + +Q K L D +V VL+++ R +E A+++ D +
Sbjct: 230 ITGLCKLRDADRAVQVLGKMREAGLKPRDFTYNSVVDVLVKVGRMDE---ALRLKDQMLL 286
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ D ++ L+ G++ +A+ +++ ++ + P + TYT +I+G +G
Sbjct: 287 ATGKKMDVFLATTLMQGYCLHGEIGKALDLFDEAVRDGVTPTNVTYTVLIKGCDAEGMTD 346
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ + MI+ P F +++KG LLR+K +D LF
Sbjct: 347 ETYKLCRQMIEQGLLPSTYEFNLVIKG-----LLRNKQWEDAIALF 387
Score = 40.8 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + + AV ++D + K+ +P L++ G M+EA++++ M + P
Sbjct: 408 LSKHHKVHEAVNLWDKM-KEAGVKPSIVTCHSLLLGYCEKGCMDEALKLYSEMPGKGFPP 466
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ TYT +++G++K + A + +M ++ E + IL+ GL
Sbjct: 467 NEVTYTTLMKGYIKKKAFDKAYALLNEMHQNGVSCGEYTYNILINGL 513
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D IY LI ++ G + A++++ M PD +T+T + G + G A +
Sbjct: 677 DTEIYTTLIDGFSKVGNVAFALELYSEMLANHNIPDDKTFTALTHGLCRSGDIDGAKRLL 736
Query: 201 EDMIKSPDPPEELPFRILL 219
+DM + P + + +L+
Sbjct: 737 DDMTRLDVCPNTVTYNMLI 755
Score = 37.7 bits (86), Expect = 4.9, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
Y Y LI L ++ E ++ + E P + TY +I GF+K G A+ +Y
Sbjct: 504 YTYNILINGLCMVDRVCEVDEMLKRFVSEGFVPTTMTYNSIINGFVKAGMMGSALAMYRQ 563
Query: 203 MIKSPDPPEELPFRILLKG 221
M + P + + + G
Sbjct: 564 MCEKGITPNIVTYTSFIDG 582
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD +++ LI A A+ K+++AM V+ MR+ L P+ Y VI K GS DAM
Sbjct: 373 QPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAML 432
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+E MI P + + L+ GL
Sbjct: 433 YFEQMIDEGLTPNIIVYTSLIHGL 456
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ I + K+FD++ + +PD Y LI GKM+EA ++ SM + PD
Sbjct: 493 KEGRVIESEKLFDLMVRIG-VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDI 551
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ + DA+ ++++M+ S P + + I+L+GL
Sbjct: 552 VTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF 597
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 234 PDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGT 293
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M P + + L+ L
Sbjct: 294 LKKMRSDGVEPNVVTYSSLMNYL 316
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 46/86 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D +P+ Y L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 298 RSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGAL 357
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + + M+++ P+ F IL+
Sbjct: 358 VEMHALLDLMVRNGIQPDHHVFNILI 383
Score = 40.0 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM---RKEDLFPDSQTYTEVIRGFLKDGSPADA 196
PD + Y +L+ L + EA+++ M R PD +Y V+ GF K+G A
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKA 220
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGL 222
+ Y +M+ P+ + + ++ L
Sbjct: 221 YSTYHEMLDRGILPDVVTYSSIIAAL 246
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+QE+ A+ +F +R Q P+ Y +I L ++G +++AM +E M E L P+
Sbjct: 388 KQEKVDQAMLVFSKMR-QHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNI 446
Query: 178 QTYTEVIRGF 187
YT +I G
Sbjct: 447 IVYTSLIHGL 456
Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ + G ++A + M + PD TY+ +I K + AM +
Sbjct: 199 PDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEV 258
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + +L G
Sbjct: 259 LNTMVKNGVMPDCMTYNSILHG 280
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y Y +I L + +++EAM + M +++ PD+ TY +I G K G
Sbjct: 246 QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT 305
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
A+N+ +M P + + + LL L +
Sbjct: 306 SALNLMNEMHHRGQPADVVTYTSLLDALCKN 336
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + ET A+K+ +I + +P+ +Y +I L + +NEA ++ M ++FP
Sbjct: 125 LCKTGETRCAIKLLRMIEDRST-RPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFP 183
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ TY +I F G A ++ +MI P+ F IL+ L
Sbjct: 184 NVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALC 231
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QP Y Y LI L + G++ A ++++ + + D TYT +I G K+G
Sbjct: 350 KERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMF 409
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A+ I M + P + F I+++ L
Sbjct: 410 DEALAIKSKMEDNGCIPNAVTFEIIIRSL 438
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 127 KIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
++FD ++R++ P+ Y L+ L RTG+ EA ++ + M + PD YT +
Sbjct: 241 ELFDEMLRRK--VSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLAD 298
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G DA+ + + M++ + P L + +++ GL
Sbjct: 299 GLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLC 336
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L L + G+ +A++V + M ++ P + TY V+ G K+ DA
Sbjct: 287 RPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFG 346
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E M+K P+ + + LLKGL
Sbjct: 347 VVEMMVKKGKKPDAVTYNTLLKGLC 371
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
+D A++ L R++ A +F +R + + D + +I + G + A ++
Sbjct: 503 IDYNALMTSLCREDSLEQARSLFQEMRNVN-HNVDVVSFNIIIDGTLKAGDVKSAKELLS 561
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M DL PD+ T++ +I F K G +AM +YE M+ P + F LLKG
Sbjct: 562 EMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKG 616
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 48/90 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + +LI L + G++++A ++ SM + L + TY +I G+L +A+
Sbjct: 394 KPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALK 453
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+++ ++S P + + +++ GL +L
Sbjct: 454 LWKYAVESGFSPNSMTYSVMINGLCKMQML 483
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)
Query: 81 LGLKRFKDDEEKLQKFIKTH-------VLRLLK--------MDIVAVLIELERQEETILA 125
L L RF + F+ TH VL L+ ++ VL R + A
Sbjct: 72 LVLPRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKA 131
Query: 126 VKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEV 183
+ +F + R D PD Y L+ + ++ EA ++E+M+K D P+ TY+ +
Sbjct: 132 MSLFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVL 191
Query: 184 IRGFLKDGSPADAMNIYEDM 203
I + K G + + + E+M
Sbjct: 192 IDCYCKSGEVGEGLGLLEEM 211
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 94 QKFIKTHVLRLLKMDIVAVLI---ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150
+ +K R ++ D+VA + L + A+K+ D++ Q +P Y ++
Sbjct: 275 SEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVLDLM-VQKGEEPGTLTYNVVVN 333
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI--KSPD 208
L + +M++A V E M K+ PD+ TY +++G G +AM++++ ++ K
Sbjct: 334 GLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHV 393
Query: 209 PPEELPFRILLKGLL 223
P+ L++GL
Sbjct: 394 KPDVFTCNNLIQGLC 408
>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 643
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ DI++ + +PD+Y Y LI + + GK+ EA + E M++ L P + TY +I G+
Sbjct: 293 VLDIMKNR-GVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGY 351
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G A ++M++ P + +L+ L
Sbjct: 352 CNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHAL 386
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 10/124 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ R GK+ EA ++ + M++ + PD +Y +I G+ K G DA I
Sbjct: 514 PDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTI 573
Query: 200 YEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
++M+ P L + L++GL L LL+ V K + P+ Y E
Sbjct: 574 RDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKG---ITPDDSTYFSLIEG 630
Query: 253 FGKL 256
GK+
Sbjct: 631 IGKV 634
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI AL GKM+EA + + M + PDS TY +I G+ + G+ A N+
Sbjct: 374 PTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNL 433
Query: 200 YEDMIKSPDPPEELPFRILL 219
+++MI P + + L+
Sbjct: 434 HDEMISKGIQPTLVTYTSLI 453
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
IIR + PD ++ LI G ++ A + + M K ++ PD TY +++G ++
Sbjct: 472 IIR--EGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCRE 529
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G +A + ++M + P+ + + L+ G
Sbjct: 530 GKVEEARELLKEMKRRGIRPDHISYNTLISG 560
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I G++ A V + M+ + PDS TY +I G K G +A
Sbjct: 268 KPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASG 327
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I E M + P + + L+ G
Sbjct: 328 ILEKMKEIGLLPTAVTYNTLIDG 350
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 42/89 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ +PD Y LI ++ G +N+A + + M P TY +I+G K+
Sbjct: 543 KRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQG 602
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A + ++M+ P++ + L++G+
Sbjct: 603 DLAEELLKEMVSKGITPDDSTYFSLIEGI 631
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L + E ++ ++FDI+ PD Y++ ++ A G++++A++++ M K
Sbjct: 168 LLSSLVKANEVKMSYQVFDIMCHCG-VTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKV 226
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TY +I G K+G +A E M K P + + +L+ GL+
Sbjct: 227 GVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLINGLV 278
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 35/66 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y Y L+ L GK+ EA +W +K FPD+ TY +I G+ K +
Sbjct: 509 QPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEK 568
Query: 199 IYEDMI 204
++++M+
Sbjct: 569 LFQEMV 574
Score = 45.4 bits (106), Expect = 0.025, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +R + Q A Y LI L+ G ++ A Q+ + MRKE L P+ YT +I
Sbjct: 601 AFRLRDDMRSRGIPQTSA-TYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALI 659
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ K G +I ++M + P ++ + I++ G
Sbjct: 660 GGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMING 696
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ Y LI+A + GK+ E ++ E M + + PD TY ++ G G +A ++
Sbjct: 476 DSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLW 535
Query: 201 EDMIKSPDPPEELPFRILLKG 221
+ K+ + P+ + I++ G
Sbjct: 536 HECKKNGNFPDAYTYGIMIDG 556
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L++LER +E +K Y P+ +Y LI R G ++ A+Q+ + M
Sbjct: 277 LVKLERFDEANCILKEM----SDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNG 332
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ P+S T +I+G+ K A ++ E+M+
Sbjct: 333 ISPNSVTCNSLIQGYCKSNQMEHAEHLLEEML 364
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D +RK+ P+ Y LI + G+M++ + + M ++ P+ TYT +I
Sbjct: 636 ANQLLDEMRKEG-LSPNVVCYTALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMI 694
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G+ A + +M + P+ + + L G
Sbjct: 695 NGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGF 732
Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I + G M A ++ M ++ + PD+ TY + GF K+G +A+
Sbjct: 684 HPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEGKMEEALK 743
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ + M +++ + L+ G
Sbjct: 744 VCDLMSTGGISLDDITYTTLIDG 766
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDAY Y +I + ++ E ++++ M + ++ Y +IR + ++G+ +A +
Sbjct: 545 PDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRL 604
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+DM P + L+ GL
Sbjct: 605 RDDMRSRGIPQTSATYSSLIHGL 627
Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 36/75 (48%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI L G EA ++ + M + L DS +Y +I K+G + + E+M++
Sbjct: 448 LIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRG 507
Query: 208 DPPEELPFRILLKGL 222
P+ + +LL GL
Sbjct: 508 IQPDMYTYNMLLHGL 522
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ +A +Y LI A G M EA ++ + MR + S TY+ +I G G A
Sbjct: 579 EQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQ 638
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ ++M K P + + L+ G
Sbjct: 639 LLDEMRKEGLSPNVVCYTALIGG 661
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+QP+ Y LI L + G ++EA+ + MR L P+ Q YT ++ G K+G +A
Sbjct: 498 GFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEA 557
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++ +M+ +++ + LL G L
Sbjct: 558 VQLFNEMVHKGMSLDKVVYTALLDGYL 584
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + G +NEA+Q++ M + + D YT ++ G+LK G+ DA +
Sbjct: 536 PNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFAL 595
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
MI S + + + G ++ + ++ F E+ H P ++ L
Sbjct: 596 KAKMIDSGLQLDLFCYTCFISGFCNLNMM-PEAREVFSEMI--GHGIAPDRAVYNCL 649
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ + + + A + G + EAM+++ MR + + TYT +I G K G
Sbjct: 285 KREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRL 344
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ + ++M++ P + + +L+ GL
Sbjct: 345 DDAIVLLDEMVRQGVPLNVVTYTVLVDGLC 374
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L+ L R L ++F + P+ + + +I L + G++ EA ++ M++
Sbjct: 163 ILLRLARDRSGRLVRRLF-----EQLPAPNVFTFNIVIDFLCKEGELAEARSLFSRMKEM 217
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
PD T+ +I G+ K G + + E+M +S + + + L+
Sbjct: 218 GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALIN 266
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
++LI L R+ A FD ++ D ++PD +Y +L+ R G + EA +V+ M+
Sbjct: 216 SILISILCRKRRATEAQSFFDSLK--DKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMK 273
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
P+ TYT VI + G A +++ +M+ P + F LL+
Sbjct: 274 VAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLR 324
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y +I AL R G++ A V+ M P+S T+ ++R +K G + +
Sbjct: 279 PNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQV 338
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
Y M + PP+ + + L++
Sbjct: 339 YNQMKRMGCPPDTVTYNFLIES 360
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P++ + +L+ + G+ + +QV+ M++ PD+ TY +I KDG+ +A+
Sbjct: 313 EPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIESHCKDGNLDEALK 372
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M+K P F L +
Sbjct: 373 VLNSMVKKGCSPNASTFNGLFGSI 396
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query: 125 AVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV F+ R +D+ +PD + LI L R + EA ++S+ K+ PD YT +
Sbjct: 196 AVHAFN--RMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSL-KDKFEPDVIVYTNL 252
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+RG+ + G+ +A ++ +M + P + I++ L
Sbjct: 253 VRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALC 292
>gi|125541147|gb|EAY87542.1| hypothetical protein OsI_08951 [Oryza sativa Indica Group]
Length = 482
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q+E V +F ++KQ WY D IY LI + R G++ AM ++ MR PD+
Sbjct: 85 QQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTS 144
Query: 179 TYTEVIRGFL----KDGSPADAMNIYEDMIKSPD--PPEELPFRILLKGLLPHPLLRSK- 231
Y +I L K + A A+ +E M K+ D P + + ILL+ +
Sbjct: 145 VYNSLIGAHLHSRDKSKALAKALGYFEKM-KTIDRCQPNIVTYNILLRAFAQAGDTKQLD 203
Query: 232 -VKKDFEE--LFPEKHAYDPPEEIFGK 255
+ KD +E + P+ + Y+ + +GK
Sbjct: 204 ILFKDLDESPVSPDIYTYNGVMDAYGK 230
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ F+ ++ D QP+ Y L+ A A+ G + +++ + + + PD TY V+
Sbjct: 166 ALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVM 225
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+ K+G + ++ M + P+ + F IL+ + + K
Sbjct: 226 DAYGKNGMITEMESVLVRMKSNQCRPDVITFNILI------------------DSYGRKQ 267
Query: 245 AYDPPEEIFGKL 256
A+D E++F L
Sbjct: 268 AFDKMEQVFKSL 279
>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 418
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D Y Y LI L + KM++A ++++ M L P+ T+T +I G K+ AM
Sbjct: 203 QSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAME 262
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ P+ + + L+ GL
Sbjct: 263 IYKQMLSQSLSPDLITYNTLIYGLC 287
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A++I+ + Q PD Y LI L + G + +A + + M + L PD TYT +
Sbjct: 259 VAMEIYKQMLSQSL-SPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MIK +++ + L+ GL
Sbjct: 318 IDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLC 357
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + +++ AM++++ M + L PD TY +I G K G A ++
Sbjct: 239 PNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDL 298
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M P+++ + L+ G
Sbjct: 299 IDEMSMKGLKPDKITYTTLIDG 320
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + G + A + + M KE++ D YT +I G ++G DA
Sbjct: 308 KPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEK 367
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ +M+ PE + +++
Sbjct: 368 MLREMLSVGLKPEIGTYTMIIN 389
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L +L EE AVKI D + +D P+A Y +I +L + +++EA ++ +
Sbjct: 349 LISGLCKLGEIEE---AVKILDQMVSRDC-SPNAVTYNAIISSLCKENRVDEATEIARLL 404
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + PD T+ +I+G + AM+++E+M P+E + +L+ L
Sbjct: 405 TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLC 459
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +IFD + Q + D+ Y LI L ++ ++ +A Q+ + M E L PD TY ++
Sbjct: 502 AEEIFDEMELQGVSR-DSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLL 560
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFE 237
F K G A +I + M S P+ + + L+ GL + LLRS K
Sbjct: 561 THFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM- 619
Query: 238 ELFPEKHAYDP 248
L P HAY+P
Sbjct: 620 VLTP--HAYNP 628
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ ++PD + Y L+ L + G AM+V ++M L PD TY +I G K G
Sbjct: 301 SEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIE 360
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ I + M+ P + + ++ L
Sbjct: 361 EAVKILDQMVSRDCSPNAVTYNAIISSLC 389
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI L + G++ EA+++ + M D P++ TY +I K+ +A I
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ P+ F L++GL
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLC 424
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K DI++ PD Y LI L + G++ A ++ S++ + + Y VI
Sbjct: 571 KAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVI 630
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K +AM ++ +M+ +PP+ + ++I+ +GL
Sbjct: 631 QALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLC 669
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + LI AL + ++ A+ + E M L PD T+T +++G+++ G+ A+ I
Sbjct: 202 DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIK 261
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E M++ P ++ +L+ G
Sbjct: 262 EQMVEYGCPCTDVTVNVLINGFC 284
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYE 201
+ Y +I AL + + +EAM+++ M + PD+ TY V RG G P +A++
Sbjct: 624 HAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTV 683
Query: 202 DMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+MI+ + PE F +L +GL + + VK
Sbjct: 684 EMIERGNIPEFSSFVMLAEGLCTLSMDDTLVK 715
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ IY LI + ++ EA ++++ M + + DS TY +I G K DA +
Sbjct: 482 NVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLM 541
Query: 201 EDMIKSPDPPEELPFRILL 219
+ MI P++ + LL
Sbjct: 542 DQMIMEGLRPDKFTYNSLL 560
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD + Y LI +L + K+ EA+ + + M + Y +I GF K+
Sbjct: 440 KGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRI 499
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD---------FEELFPEKH 244
+A I+++M + + + L+ G L +SK +D E L P+K
Sbjct: 500 EEAEEIFDEMELQGVSRDSVTYNTLIDG-----LCKSKRVEDAAQLMDQMIMEGLRPDKF 554
Query: 245 AYD 247
Y+
Sbjct: 555 TYN 557
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y ++ A + ++ A + M E P+ QT+T +++GF DG DA+
Sbjct: 259 RPDTVAYTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALG 318
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P + + +L++GL
Sbjct: 319 MWNWMVAEGWAPSTISYNVLIRGLC 343
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
Query: 127 KIFDIIRKQDW-----YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
K+ D + +W + P Y LI L G + A+ V+ M K D PD +TY+
Sbjct: 312 KVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKSDCLPDVRTYS 371
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+I GF K G AM+I+ DM + P + +
Sbjct: 372 TLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVY 405
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F + K D PD Y LI ++ G ++ AM +W M P+ YT ++
Sbjct: 351 ALFVFSCMGKSDCL-PDVRTYSTLIDGFSKAGDLDVAMSIWNDMTNAGCKPNVVVYTNMV 409
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K A N+ + M PP L F L++ L
Sbjct: 410 DVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLC 448
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI +L G+ A+ V+ MR+ P+ +TY E++ G ++G+ DA+ +
Sbjct: 435 PNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRM 494
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M+ + + + GL
Sbjct: 495 LTEMLNHGFELSLVSYNTTISGLC 518
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y +++ L + ++A + + M E+ P++ T+ +IR G A+N
Sbjct: 399 KPNVVVYTNMVDVLCKKVMFDQAENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALN 458
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ M + PP + + LL GL
Sbjct: 459 VFHGMRRYGCPPNDRTYNELLHGL 482
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQ-DWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+VA + R A+K F R P +Y L+ AL R + + V+++
Sbjct: 93 LVAAICAFARAGAADRALKTFYRARHDLGCAAPTVRVYNHLLDALLRENLVAAVVPVYDN 152
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
MRK + P+ TY +I+ ++ A + ++M + P+E+ ++ L
Sbjct: 153 MRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTIISALCKLDR 212
Query: 228 LRSKVKKDFEELFPEKHAYDP 248
L + + E+ P +Y+
Sbjct: 213 L-DEARGILAEMTPVGASYNA 232
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A I D ++K + P+ Y Y L+ + GK+ EA QV++ ++K L D+
Sbjct: 281 RSGEVERAKMILDFMKK-NGCNPNVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDT 339
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
YT ++ ++G +AM + +M S + L + ++L+GL
Sbjct: 340 VGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVILRGL 384
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD ++K + D Y L+ L R G+++EAM++ M+ D+ TY ++
Sbjct: 323 AKQVFDEVKKTG-LKLDTVGYTTLMNCLCRNGEIDEAMKLLGEMKASRCRADALTYNVIL 381
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
RG +G +A+ + + + +RI+L L + L VK
Sbjct: 382 RGLSSEGRSEEALQMLDQWGCEGVHLNKGSYRIILNALCCNGELEKAVK 430
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 51/99 (51%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + + PD I+ +I R+G++ A + + M+K P+ Y+ ++
Sbjct: 252 AVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALM 311
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K+G +A +++++ K+ + + + L+ L
Sbjct: 312 NGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLC 350
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
A ++ + +++ P++ Y L+ L + EA++++E M K + PD + +
Sbjct: 216 AFRVVEEMKRSGISYPNSITYSTLMDCLFAQSRSKEAVELFEDMISKRGISPDPVIFNVM 275
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I GF + G A I + M K+ P + L+ G ++ + K+ F+E+
Sbjct: 276 INGFCRSGEVERAKMILDFMKKNGCNPNVYNYSALMNGFCKEGKIQ-EAKQVFDEV 330
>gi|414871694|tpg|DAA50251.1| TPA: hypothetical protein ZEAMMB73_705675 [Zea mays]
Length = 1161
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 15/156 (9%)
Query: 66 WRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILA 125
W KK K AL V+ ++R + +Q + T+ + + K L ++R L
Sbjct: 269 WYVKKGRFKAALCVLEDMER-----DSVQADVYTYNIMIDK------LCRIKRSTRAFLL 317
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+K +RK D PD Y LI R GK+N A V+ M +++L P TYT +I
Sbjct: 318 LKR---MRKDD-LTPDECTYNTLINGFFREGKINHARYVFNHMLRQNLVPSVATYTTMID 373
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ ++ A++I +M + P EL + LL G
Sbjct: 374 GYCRNRRIDKALSILSEMQITGVMPSELTYSALLNG 409
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
F+ E+ LQK H+ + + + + + + L V + D+ R D Q D Y Y
Sbjct: 242 FRKAEDMLQKMKSCHISNSVTYNTILHWYVKKGRFKAALCV-LEDMER--DSVQADVYTY 298
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+I L R + A + + MRK+DL PD TY +I GF ++G A ++ M++
Sbjct: 299 NIMIDKLCRIKRSTRAFLLLKRMRKDDLTPDECTYNTLINGFFREGKINHARYVFNHMLR 358
Query: 206 SPDPPEELPFRILLKG 221
P + ++ G
Sbjct: 359 QNLVPSVATYTTMIDG 374
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + L++ + R G ++EA+ + E M K + PD TYT ++ GF + G A+ I
Sbjct: 644 DEKTFNALLLGICRYGTLDEALDLCEKMIKNNCLPDIHTYTILLSGFCRKGKILPALVIL 703
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ M++ P+ + + LL GL+
Sbjct: 704 QMMLEKGVVPDTVAYTCLLNGLI 726
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD ++ LI A + KM+ A+QV+ M+ + P S+T++ +I G ++ G + +
Sbjct: 854 PDRLVFDILITAFSEKSKMHNALQVFNCMKWLHMSPSSKTFSAMINGLIRKGYLDHSHKV 913
Query: 200 YEDMIK 205
+M++
Sbjct: 914 LHEMLQ 919
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 14/102 (13%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D PD Y LI + R KM+E ++ M+K + P+ YT +I + K G
Sbjct: 463 EDGIDPDVITYSALINGMCRMAKMHETKEILSRMQKSGILPNDVLYTTLICYYCKAGYVK 522
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236
+A+ + D+ + +GL+ +P++ + + F
Sbjct: 523 EALKHFVDIYR--------------RGLVANPVIHNALLHAF 550
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 125 AVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+K F DI R+ P I+ L+ A R G + EA + M + ++ DS ++ +
Sbjct: 524 ALKHFVDIYRRGLVANP--VIHNALLHAFYREGMITEAEHFRQYMSRMNISFDSVSFNRI 581
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
I + G+ A ++Y+DM++ P ++ LL+GL
Sbjct: 582 IDSYCHRGNIVGAFSVYDDMVRYGYSPNVCTYQNLLRGL 620
Score = 40.4 bits (93), Expect = 0.74, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y+ LI+ L+ G ++ A++ E M E +FPD + +I F + +A+
Sbjct: 818 RPDNVTYRLLILGLSECGLIDIAVKFLEKMVLEGIFPDRLVFDILITAFSEKSKMHNALQ 877
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M P F ++ GL+
Sbjct: 878 VFNCMKWLHMSPSSKTFSAMINGLI 902
Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y L+ A R G+++ A ++ E M+ + P + +IRG + G +A+
Sbjct: 923 QPNHTHYIALVNAKCRVGEIDRAFRLKEEMKAIGIVPAEVAESSIIRGLCRCGKLEEAVI 982
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ M++S P F L+ L
Sbjct: 983 VFSSMMRSGMVPTVATFTTLMHSL 1006
Score = 40.4 bits (93), Expect = 0.79, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y P+ Y++L+ L + G + +A Q + D +T+ ++ G + G+ +A+
Sbjct: 606 YSPNVCTYQNLLRGLCQGGHLVQARQFMSCLLDIPFAIDEKTFNALLLGICRYGTLDEAL 665
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
++ E MIK+ P+ + ILL G
Sbjct: 666 DLCEKMIKNNCLPDIHTYTILLSGF 690
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ R GK+ A+ + + M ++ + PD+ YT ++ G + +G A +
Sbjct: 678 PDIHTYTILLSGFCRKGKILPALVILQMMLEKGVVPDTVAYTCLLNGLINEGQVKAASYV 737
Query: 200 YEDMI 204
+ ++I
Sbjct: 738 FHEII 742
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I L R GK+ EA+ V+ SM + + P T+T ++ K+ ADA+++ M
Sbjct: 967 IIRGLCRCGKLEEAVIVFSSMMRSGMVPTVATFTTLMHSLCKESKIADALHLKRLMELCR 1026
Query: 208 DPPEELPFRILLKGL 222
+ + + +L+ GL
Sbjct: 1027 LRVDVVSYNVLITGL 1041
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 79 VILGLKRFKDDEEKL---QKFIKTHVLRLLKMDIVAVLIELE---RQEETILAVKIFDII 132
++LG+ R+ +E L +K IK + L DI I L R+ + + A+ I ++
Sbjct: 651 LLLGICRYGTLDEALDLCEKMIKNNCLP----DIHTYTILLSGFCRKGKILPALVILQMM 706
Query: 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW-ESMRKEDLFPDSQTYTEVIRGFLKDG 191
++ PD Y L+ L G++ A V+ E + KE L+ D Y ++ G+LK
Sbjct: 707 LEKG-VVPDTVAYTCLLNGLINEGQVKAASYVFHEIICKEGLYADCIAYNSLMNGYLKSR 765
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ + DM ++ P + IL+ G
Sbjct: 766 NVNTIKRMMSDMYQNEVYPNSASYNILMHG 795
>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 182
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ +L Q +A+ +F ++K + + D Y ++ + + GK+N+A +++ ++
Sbjct: 29 ITLLDGFCNQGHLDMALALFHEMQK-NTLKLDCVAYNIIVDGMCKAGKLNDAKELFSTLP 87
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
E L PD +TY +I+ F +GS +A ++ +M + P+ + ++++G L H L
Sbjct: 88 IEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLS 147
Query: 230 SKVK 233
+
Sbjct: 148 GATQ 151
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 32/66 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI G + EA QV+ M + PD +Y +I+GFL+ + A
Sbjct: 92 QPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSYNVIIQGFLRHNDLSGATQ 151
Query: 199 IYEDMI 204
+ +MI
Sbjct: 152 LIHEMI 157
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L +Q + + A +F+ + Q + + IY LI + ++ G M EAM+++E M+ E
Sbjct: 331 VIGGLCKQRKCMEAYAVFETM-NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNE 389
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
PD+ TY+ ++ G K G D M +++
Sbjct: 390 GFEPDAVTYSVLVNGLCKSGRLDDGMELFD 419
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + K + ++PDA Y L+ L ++G++++ M++++ R + + ++ Y +I
Sbjct: 379 AMRLFERM-KNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLI 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K G DA N++E+M + + + ++ L H
Sbjct: 438 DGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKH 478
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+Y Y +I ALA+ GK+++A+ ++ M +E T+T +I G K+ +A+ +
Sbjct: 464 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFW 523
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ MI P FR L GL
Sbjct: 524 DKMIDKGITPTVASFRALAIGLC 546
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I L + K EA V+E+M ++ + YT +I + K+GS +AM ++E M
Sbjct: 328 YSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMK 387
Query: 205 KSPDPPEELPFRILLKGLL 223
P+ + + +L+ GL
Sbjct: 388 NEGFEPDAVTYSVLVNGLC 406
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ P Y Y L+ L + + A +V+E M + PD+ TY +I+G+ K G
Sbjct: 212 KENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKL 271
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
AM + DM P+++ + L++
Sbjct: 272 QKAMEKFRDMEMKNVKPDKITYMTLIQAC 300
>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
Length = 561
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L R G + AM++ M + + + T+T +I GF KDG+ +A +
Sbjct: 154 PSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRL 213
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M++S P E+ F ++++G
Sbjct: 214 FHKMMESSLVPNEVTFNVMIEG 235
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 130 DIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D+++K + + PD Y +I L + G N+A ++W M + L PD YT +IR
Sbjct: 383 DLMQKNTESGFFPDCISYSTIINELCKVGDTNKAFELWNEMLYKGLKPDIVAYTILIRWC 442
Query: 188 LKDGSPADAMNIYEDMIKS-PDPPE 211
G + IY DM+ P+ PE
Sbjct: 443 NIHGEFDKGLGIYSDMVTVLPEYPE 467
>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 770
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L L++ G+ ++A++V + M K P++ TY +I G K+G DA+
Sbjct: 301 RPDVVAYTVLADGLSKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALG 360
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I E M K P+ + + L+KGL
Sbjct: 361 ILETMAKKGKKPDVVTYSTLVKGL 384
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+++RK P+ Y L+ AL + K EA Q+ ++M + PD YT + G K
Sbjct: 259 EMLRKN--VTPNVVTYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSK 316
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+G +DA+ + + M+K + P + + ++ GL
Sbjct: 317 NGRASDAIKVLDLMVKRGEEPNNVTYNAIINGL 349
Score = 44.3 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 60/108 (55%), Gaps = 5/108 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ K+ +P+ Y +I L + G++++A+ + E+M K+ PD TY+ ++
Sbjct: 323 AIKVLDLMVKRG-EEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLV 381
Query: 185 RGFLKDGSPADAMNIYEDMIKSPD---PPEELPFRILLKGLLPHPLLR 229
+G G +A+++ +++ S + P+ F ++++ L LR
Sbjct: 382 KGLCGVGKIDEAVDLL-NLLMSKEFHIKPDVFAFNLVIQELCKQRRLR 428
Score = 43.9 bits (102), Expect = 0.069, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 125 AVKIFDIIRKQDWY-QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV + +++ ++++ +PD + + +I L + ++ A +V+ +M + + TY +
Sbjct: 393 AVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNIL 452
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I G+L G A+ +++D + S P + +L+ GL +L
Sbjct: 453 IDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLINGLCKMQML 497
Score = 41.6 bits (96), Expect = 0.34, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ PD Y +I L + ++ EA ++++ M+ + P+S T++ +I GF K+G
Sbjct: 156 KRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDV 215
Query: 194 ADAMNIYEDMIK 205
+ + E+M K
Sbjct: 216 EEGFGLLEEMEK 227
Score = 41.2 bits (95), Expect = 0.48, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L R+ A +F +R + + PD + +I + G + A ++ M
Sbjct: 522 LMASLCRESSVEQARNLFQEMRNAN-HDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNM 580
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+L PD+ T++ +I FLK G +A ++YE M+ P+ + F LLKG
Sbjct: 581 NLVPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKG 630
>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Vitis vinifera]
Length = 835
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ + ++ + L R+G+M EA ++++ M L PD YT ++ GF K G +DA N
Sbjct: 329 EENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFN 388
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I ++M + + + + +L+ GL
Sbjct: 389 IAQEMTEKSSGFDVVAYNVLINGLF 413
Score = 43.9 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 21/85 (24%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI A ++ + +A+ +++ M + L PD TYT ++ G K G +A +
Sbjct: 84 EPNVITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKS 143
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ +M + P + L+ L
Sbjct: 144 VFREMEEVGVVPNRFSYATLIDSLF 168
Score = 41.6 bits (96), Expect = 0.32, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L+ + G M E ++++ M + P ++TY +I F K + A +
Sbjct: 644 PNATTYDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKEL 703
Query: 200 YEDMIKSPDPPEELPFRILLKG---LLPHPLLRSKVKKDFE 237
++M PP + IL+ G L P L +K+ ++
Sbjct: 704 MQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQ 744
Score = 41.2 bits (95), Expect = 0.46, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G +N+ + + M ++ +FP+ Y+ ++ G+ K G +AM++
Sbjct: 225 PNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIVDGYTKKGLLNEAMDV 284
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M++ P + L+ G
Sbjct: 285 MRKMVQRNILPNVFVYGTLIDG 306
Score = 38.9 bits (89), Expect = 2.1, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L ++GK+ EA V+ M + + P+ +Y +I K+G+ A+A +
Sbjct: 120 PDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVL 179
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
M+ + F +++ L L ++ + + E++F
Sbjct: 180 QGRMVV-----RGIGFDVVVYTALMDGLFKAGMANNAEDMF 215
Score = 37.4 bits (85), Expect = 6.3, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L + GK E+ MR+ L PDS T+ +I + K+G+ +A+ +
Sbjct: 401 DVVAYNVLINGLFKLGKY-ESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLL 459
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M P + IL++ L
Sbjct: 460 NEMKSYGLKPNSITCNILVQRL 481
Score = 37.0 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E AV++ + + K + PD Y L+ + G + A ++ + +L P+
Sbjct: 29 RNGEISRAVELLEGM-KTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNV 87
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +I + K DA+ +Y++M P+ + + ++ GL
Sbjct: 88 ITYTTLIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGL 132
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 52/84 (61%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD+ Y LI+ L++ G++ A ++ +++ + + QTY VI+ ++ ++A+
Sbjct: 593 EPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVR 652
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ +M++ DPP+ + ++++ +GL
Sbjct: 653 LFREMMEKGDPPDAVTYKVVFRGL 676
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI AL R ++ A+ + E M L PD +T+T +++GF+++G+ A+
Sbjct: 208 KPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALR 267
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I E M+ + P + +L+ G
Sbjct: 268 IREQMVAAGCPSSNVTVNVLVHG 290
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD + + L+ L R G + A+++ + M +E PD TY +I G K G +A+
Sbjct: 312 FRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAV 371
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
I MI P + + L+ L
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTL 396
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I + + +D + P+ Y LI L + ++ EA ++ + + + PD T+ +I
Sbjct: 370 AVEILNQMILRD-FSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 428
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+G + AM ++E+M P+E + +L+ L
Sbjct: 429 QGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSL 466
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 4/106 (3%)
Query: 117 ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
+R EE A +IFD + Q + + Y LI L + ++ EA Q+ + M E L PD
Sbjct: 505 KRIEE---AEEIFDEMELQGISR-NVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY ++ F + G A +I + M + P+ + + L+ GL
Sbjct: 561 KFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGL 606
Score = 40.8 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+++F+ ++ + + PD + Y LI +L G++ EA+ + + M + TY +
Sbjct: 439 LAMELFEEMKTKGCH-PDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497
Query: 184 IRGFLKDGSPADAMNIYEDM 203
I GF K+ +A I+++M
Sbjct: 498 IDGFCKNKRIEEAEEIFDEM 517
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L T AM+++E M+ + PD TY +I G +A+++
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSL 478
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++M S + + L+ G ++K ++ EE+F E
Sbjct: 479 LKEMESSGCSRNVVTYNTLIDG-----FCKNKRIEEAEEIFDE 516
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYEDM 203
Y +I AL R + +EA++++ M ++ PD+ TY V RG G P +A++ +M
Sbjct: 634 YNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEM 693
Query: 204 IKSPDPPEELPFRILLKGL 222
P+ F +L +GL
Sbjct: 694 TDKGFLPDFSSFLMLAEGL 712
>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
Length = 440
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + M++AM V M K + PD TY ++ G+ G +A+ I
Sbjct: 239 PDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGI 298
Query: 200 YEDMIKSPDPPEELPFRILL 219
E M P+ + + L+
Sbjct: 299 LEKMCSDGVEPDAVTYTSLM 318
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
IVA L + + + K D++ + ++ PD Y ++ +G+ EA+ + E
Sbjct: 247 IVAALCKAQAMD------KAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILE 300
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M + + PD+ TYT ++ K+G +A I + MIK P + + LL G
Sbjct: 301 KMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHG 355
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D +PDA Y L+ L + G+ EA ++ +SM K L P+ TY+ ++ G+ G+
Sbjct: 304 SDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALV 363
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ ++ + M+++ P+ F IL+ H
Sbjct: 364 EMRDLLDLMVRNGIQPDRHVFSILICACTKH 394
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ QPD +++ LI A + ++ AM V+ MR++ L PD TY +I G K G
Sbjct: 374 RNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVD 433
Query: 195 DAM 197
DAM
Sbjct: 434 DAM 436
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + G ++A + M + + PD TY ++ K + AM++
Sbjct: 204 PDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDV 263
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + ++ G
Sbjct: 264 LNRMVKNGVMPDCITYNSIVHG 285
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P + Y L+ L + EA+++ M + D PD +Y+ +I G K+G A
Sbjct: 167 PHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAY 226
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y +M++ P+ + + ++ L
Sbjct: 227 STYHEMLERGILPDVVTYNTIVAALC 252
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + LI + +T KM+EAM+++ M+ D TYT +I GF K G+ A I
Sbjct: 314 PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEI 373
Query: 200 YEDMIKSPDPPEELPFRILL 219
+DMI+ P +L + ++
Sbjct: 374 LDDMIQKGHDPSQLSYLCIM 393
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+E I+ K + K+ ++PD +Y +L+ A+ GKM +A + M+K + P++
Sbjct: 258 REGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAA 317
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++T +I+ F K +AM I+ +M S + + + L+ G
Sbjct: 318 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFC 362
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
++ + +++ E++EE +++ + +RK PD IY +I + + G + EA+++W
Sbjct: 386 QLSYLCIMMAHEKKEELEECMELIEEMRKIGCV-PDLNIYNTMIRLVCKLGDLKEAVRLW 444
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
M+ L P TY ++ GFL G +A + +++M++
Sbjct: 445 GEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVE 484
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++ D + K +PD Y++ L+ AL + G + EA ++E MR P+ + +T ++
Sbjct: 196 AVEVLDEMPKYG-CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLL 253
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ ++G +A ++ + ++ P+ + + LL G
Sbjct: 254 YGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGG 290
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ +R + + P+ + L+ R GK+ EA V +++ PD Y ++
Sbjct: 231 AASLFEDMRVR--FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLL 288
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ + G DA ++ +M K P F IL++
Sbjct: 289 GGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFC 327
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y + L R +MNEA +E M+K L PD + +I GF+++G + + I
Sbjct: 8 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRI 67
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P + + +L+ GL
Sbjct: 68 KDVMVSCGIPINLITYNVLIHGLC 91
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 46/84 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +IY L+ L ++G + A ++++ M ++ L PDS TY+ +I G+ K + A+A ++
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 452
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M P + L+ G
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCC 476
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD I L + G++ EA++V+ ++++ L PD TY+ +I GF K G A +
Sbjct: 323 PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 382
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+++M P + L+ GL ++ + +K F+ + PEK
Sbjct: 383 HDEMCLKGIAPNIFIYNALVDGLCKSGDIQ-RARKLFDGM-PEK 424
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA + I+ ++TGKM EA + ++ M L P++ YT +I G K G+ +A++
Sbjct: 252 KPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALS 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I+ + P+ + GLL + ++ +K F EL
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV-FSEL 351
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I L++ GKM EA ++ L PD+ T+ I G+ K G +A
Sbjct: 218 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 277
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M+ P + +L+ G
Sbjct: 278 FDEMLDHGLMPNNPLYTVLING 299
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 103 RLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159
R LK D V A ++ + + A K FD + P+ +Y LI + G +
Sbjct: 249 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGL-MPNNPLYTVLINGHFKAGNLM 307
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
EA+ ++ + + PD QT + I G LK+G +A+ ++ ++ + P+ + L+
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLI 367
Query: 220 KGLLPHPLLRSKVKKDFE 237
G + +V+K FE
Sbjct: 368 SGFCK----QGEVEKAFE 381
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ +PD+ Y +I ++ + EA ++ M + + P S Y ++
Sbjct: 414 ARKLFDGMPEKGL-EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALV 472
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K+G AMN++ +M++ L F L+ G
Sbjct: 473 HGCCKEGDMEKAMNLFREMLQ-KGFATTLSFNTLIDG 508
Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L ++E+ A K+ D + + +P L+ + GKM+EA +V+E ++
Sbjct: 627 LITALCKREDLTEASKLLDEMGELGL-KPSLAACSTLVRSFHEAGKMDEATRVFEGVKSL 685
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
L PD+ T +++ G L D DA N+ + ++
Sbjct: 686 GLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L + GKM +A ++ + M P+S+T+ +I G+ ++ + A+ + ++M
Sbjct: 83 YNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEME 142
Query: 205 KSPDPPEELPFRILLKGLL 223
K P + + ++ GL
Sbjct: 143 KRNLVPSAVSYGAMINGLC 161
>gi|293336637|ref|NP_001167760.1| hypothetical protein [Zea mays]
gi|223943823|gb|ACN25995.1| unknown [Zea mays]
gi|414877894|tpg|DAA55025.1| TPA: hypothetical protein ZEAMMB73_945476 [Zea mays]
Length = 536
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 108 DIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
D +LI L R+ LA + RK+ + D+ +Y D++ AR G +++ +VW
Sbjct: 211 DAFTILIRCLCRRSHVGLASSLLQAARKE-LFGLDSNVYNDVMGGWARFGSVDKLQEVWT 269
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
M+++ L P+ ++ +I G + G DA+ +E M+ P + + +L+
Sbjct: 270 KMQEDGLVPNEVSHCHLIEGLGRVGQTEDALKAFEYMVHERYGPTTMAYNVLI 322
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 113 LIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
LIE L R +T A+K F+ + + Y P Y LI G ++ ++ ++ M +
Sbjct: 286 LIEGLGRVGQTEDALKAFEYM-VHERYGPTTMAYNVLIFNFIHIGDLDSCIKYYKDMLDK 344
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ P+ +TY+++I+ FL+ ADA+ +++DM+
Sbjct: 345 NCSPNIETYSKMIKAFLRGRRVADALQMFDDML 377
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y Y +I L + +++EAM + M +++ PD+ TY +I G K G
Sbjct: 283 QMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRIT 342
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
A+N+ +M P + + + LL L +
Sbjct: 343 SALNLMNEMHHRGQPADVVTYTSLLDALCKN 373
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 4/121 (3%)
Query: 106 KMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+MD V+ +L L + ET AVK+ +I + +P+ +Y +I L + +NEA
Sbjct: 112 QMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRST-RPNVVMYNTIIDGLCKDKLVNEAY 170
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ M +FPD+ TYT +I GF G A ++ ++MI P + IL+ L
Sbjct: 171 DLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINAL 230
Query: 223 L 223
Sbjct: 231 C 231
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P YIY LI AL + G + EA + M KE + P TY+ ++ G+ G +A
Sbjct: 217 NPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQ 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
I+ M++ P + I++ GL LLR + K+ + P+ Y+
Sbjct: 277 IFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN---MVPDTVTYNS 330
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QP Y Y LI L + G++ A ++++ + + D TYT +I G K+G
Sbjct: 387 KERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMF 446
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A+ I M + P + F I+++ L
Sbjct: 447 DEALAIKSKMEDNGCIPNAVTFEIIIRSL 475
>gi|255661020|gb|ACU25679.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
Length = 376
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 7/97 (7%)
Query: 135 QDWYQ-------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
Q WYQ PD ++ LI L GKM A+ ++ M + P+ T+ ++ GF
Sbjct: 255 QLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQLALSLYFDMNHWNCAPNLVTHNTLMEGF 314
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
KDG +A+ I+ ++++ P+ + + I LKGL
Sbjct: 315 YKDGDVRNALVIWARILRNGLQPDIISYNITLKGLCS 351
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + + + K +P+A++Y LI L + K +A++V++ M P TY +I
Sbjct: 148 AVSVLNGMIKSG-CKPNAHVYNALINGLVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLI 206
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-LPHPL 227
G K +A ++ ++M++ P + + +L+KGL L H +
Sbjct: 207 NGLCKGERFGEAYDLVKEMLEKGWNPCVITYSMLIKGLCLCHKV 250
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ +E IL I+++++K + + D+ Y L+ + G +N+++ V E + D+
Sbjct: 74 KVDEVIL---IWELMKKSGFVE-DSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVLDA 129
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
Y+ +I G KD A+++ MIKS P + L+ GL+ ++ F+
Sbjct: 130 FAYSAMINGLCKDSKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGSSKFEDAIRV-FQ 188
Query: 238 EL 239
E+
Sbjct: 189 EM 190
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 10/105 (9%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
L GK++E + +WE M+K DS TY ++ GF K+G ++++ E
Sbjct: 68 GLFNNGKVDEVILIWELMKKSGFVEDSITYGILVHGFCKNGDVNKSLHVLEIAEMKGGVL 127
Query: 211 EELPFRILLKGLLPH-------PLLRSKVKKDFEELFPEKHAYDP 248
+ + ++ GL +L +K + P H Y+
Sbjct: 128 DAFAYSAMINGLCKDSKLDKAVSVLNGMIKSGCK---PNAHVYNA 169
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 80 ILGLKRFKDDEEKLQKFIKTHV--LRLLKMDIVAVLIELERQEETILAVKIFDIIRK--Q 135
++G +F+D Q+ TH + ++ L + ER E +D++++ +
Sbjct: 174 LVGSSKFEDAIRVFQEMGSTHCSPTIITYNTLINGLCKGERFGEA------YDLVKEMLE 227
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ P Y LI L K+ A+Q+W + + PD Q + +I G G
Sbjct: 228 KGWNPCVITYSMLIKGLCLCHKVEMALQLWYQVTSKGFKPDIQMHNILIHGLCSVGKMQL 287
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
A+++Y DM P + L++G
Sbjct: 288 ALSLYFDMNHWNCAPNLVTHNTLMEG 313
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA +Y ++ R G++ + ++WE M KE + ++ ++RG +G + + I+
Sbjct: 24 DAVVYNTMLNGFFRVGRIKDCFELWELMGKEG-SRNVASFNIMMRGLFNNGKVDEVILIW 82
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
E M KS + + + IL+ G +
Sbjct: 83 ELMKKSGFVEDSITYGILVHGFCKN 107
>gi|224034665|gb|ACN36408.1| unknown [Zea mays]
Length = 168
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 44/100 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D PD Y LI LAR G + +A ++M E PD TYT ++ G G
Sbjct: 2 RSDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMNGMCVKGDA 61
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
A+ + E+M P E + LL GL + L V+
Sbjct: 62 LGALKLLEEMQGKGCQPNERTYSTLLMGLCKNKKLDKAVE 101
>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Brachypodium distachyon]
Length = 460
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 129 FDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
F ++R+ + P+A Y LI+A +R G A+ +++ M + + PD+ +Y ++
Sbjct: 65 FAVLRRMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSYNVLMHC 124
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ G P DA ++ DM + P + LL GL
Sbjct: 125 LFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGL 160
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 103 RLLKMDIVAVL--IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
RL+ + + A+ LER E ++ + + PD Y L+ A R ++
Sbjct: 11 RLMNVCLAALCRSGSLERAESVLIDAILLGM-------PPDVVTYNTLLAAHCRAAGLDA 63
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
V MR+ ++P++ TY +I + G A++++++M+++ P+ + +L+
Sbjct: 64 GFAVLRRMREAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSYNVLM- 122
Query: 221 GLLPHPLLRSKVKKDFEELFPE 242
H L RS +D +F +
Sbjct: 123 ----HCLFRSGHPEDAYRVFAD 140
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++++ R T+ A+ +FD + + PDA+ Y L+ L R+G +A +V+ M +
Sbjct: 85 SLIVAASRVGLTMRALDLFDEMLRAGI-APDAWSYNVLMHCLFRSGHPEDAYRVFADMAE 143
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + P + TY ++ G K G +A ++ + + P + + ++ GL
Sbjct: 144 KGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQRVGLPVGIVTYNTMINGLC 196
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ I + D PDA+ Y LI+ R K+++A +V++ M K+ P+S TY+ +I
Sbjct: 216 AVLVFNKIFQFD-LCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLI 274
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G +G +AM++ E+M + P + + + L
Sbjct: 275 NGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSL 312
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ + K D P Y LI+ + G +N A + M++ + PD +TY E+I
Sbjct: 426 AMVVFNKMLK-DGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELI 484
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF K G A + + +M+K P + + ++ G
Sbjct: 485 SGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDG 521
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y Y I +L G++++A+ + SM K+ P QTYT +I G + G A+
Sbjct: 299 EPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIG 358
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y M+K P + + L+ L
Sbjct: 359 MYHKMLKEGLVPNTVTYNALINEL 382
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + +I L + GK+ EA+ V+ + + DL PD+ TYT +I G ++ A
Sbjct: 194 KPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFE 253
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+++ M+K P + + L+ GL
Sbjct: 254 VFDRMVKDGCNPNSVTYSTLINGL 277
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + K D P++ Y LI L G++ EAM + E M ++ + P TYT I
Sbjct: 251 AFEVFDRMVK-DGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPI 309
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G DA+N+ M K P + ++ GL
Sbjct: 310 SSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLF 348
Score = 44.7 bits (104), Expect = 0.040, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
F + K+ +PD Y +LI + GK++ A + M K + P+ TYT +I G+
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYC 523
Query: 189 KDGSPADAMNIYEDM 203
K+G A++++E M
Sbjct: 524 KEGKIDVALSLFERM 538
Score = 42.0 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF+++ + +QP +IYK LI AL + EA+ +++S+ K+ D +T ++
Sbjct: 702 ALEIFNLMAVKG-FQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLV 760
Query: 185 RGFLKDG 191
G L++G
Sbjct: 761 DGLLQEG 767
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + T LA KIF + K++ P+A+ Y LI L + GK++ A E + + P
Sbjct: 592 LCKNTATNLAFKIFHEMEKKNCL-PNAHTYTSLIYGLCQEGKVDAA----ERLTENGCEP 646
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDM 203
TY+ ++ G ++G +A + E+M
Sbjct: 647 TIDTYSTLVSGLCREGRSNEASQLVENM 674
Score = 41.2 bits (95), Expect = 0.38, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L R + LA+ ++ + K+ P+ Y LI L G+ A+++++ M
Sbjct: 342 AIISGLFRAGKMELAIGMYHKMLKEGLV-PNTVTYNALINELCTEGRFGIALKIFDWMEG 400
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
++QTY ++I+G AM ++ M+K P + + L+
Sbjct: 401 HGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLI 449
Score = 40.8 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L R GKM A+ ++ M KE L P++ TY +I +G A+ I
Sbjct: 335 PSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKI 394
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M + ++KGL
Sbjct: 395 FDWMEGHGTLANAQTYNQIIKGLF 418
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y L+ L R G+ NEA Q+ E+M+++ L P + Y ++ K A+
Sbjct: 645 EPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALE 704
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I+ M P +++L+ L
Sbjct: 705 IFNLMAVKGFQPHLFIYKVLICAL 728
Score = 36.6 bits (83), Expect = 9.9, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y +I + GK++ A+ ++E M + +TY +I G K ++A
Sbjct: 510 PNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKF 569
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL--LRSKVKKDFEE--LFPEKHAY 246
M + P + + L+ GL + L K+ + E+ P H Y
Sbjct: 570 CAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTY 620
>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
Length = 461
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + M++AM V M K + PD TY ++ G+ G +A+ I
Sbjct: 239 PDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGI 298
Query: 200 YEDMIKSPDPPEELPFRILL 219
E M P+ + + L+
Sbjct: 299 LEKMCSDGVEPDAVTYTSLM 318
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
IVA L + + + K D++ + ++ PD Y ++ +G+ EA+ + E
Sbjct: 247 IVAALCKAQAMD------KAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILE 300
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
M + + PD+ TYT ++ K+G +A I + MIK P + + LL G
Sbjct: 301 KMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHG 355
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
D +PDA Y L+ L + G+ EA ++ +SM K L P+ TY+ ++ G+ G+
Sbjct: 304 SDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGA 361
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + G ++A + M + + PD TY ++ K + AM++
Sbjct: 204 PDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDV 263
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K+ P+ + + ++ G
Sbjct: 264 LNRMVKNGVMPDCITYNSIVHG 285
Score = 37.7 bits (86), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
P + Y L+ L + EA+++ M + D PD +Y+ +I G K+G A
Sbjct: 167 PHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAY 226
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y +M++ P+ + + ++ L
Sbjct: 227 STYHEMLERGILPDVVTYNTIVAALC 252
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G++++ ++++ M + + ++ TY +I
Sbjct: 565 ATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K G+ A++I+++MI S P+ + R +L GL
Sbjct: 624 CGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ ++ +T+ A+ + + + P+ IY +I +L + G+ ++A ++ M+++ +FP
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK---SPD------------------PPEELP 214
D TY +I GF G +DA + ++M++ SPD EEL
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348
Query: 215 FRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+L +G++P+ + S + F +++ D E +F
Sbjct: 349 DEMLPRGIIPNTITYSSMIDG----FCKQNRLDAAEHMF 383
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+T +I G+ K G D + +
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICG 625
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 AVKIFDIIRKQ----------DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
A+++F +++K + +PD Y LI L GK EA +++E M +
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD+ TY+ +I G K +A +++ M P + F L+ G
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A + GK EA ++++ M + P++ TY+ +I GF K A +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P + F L+ G
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDG 404
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI ++++ M++ M + L D+ TY +I GF G A++
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR---------SKVKKDFEELFP 241
+ ++MI S P+ + LL GL + L+ K KKD + P
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
++ V++ +ER + L + ++ + RKQ + D Y + LI K+ A+ +
Sbjct: 85 LMGVVVRMERPD---LVISLYQKMERKQ--IRCDIYSFTILIKCFCSCSKLPFALSTFGK 139
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K L PD T+ ++ G + ++A+N++ M ++ P + F L+ GL
Sbjct: 140 LTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRK-----------EDLFPDSQTYTEVIRGFL 188
PD L+ L GK+ +A+++++ M+K + PD QTY +I G +
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G +A +YE+M P+ + + ++ GL L
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 9/112 (8%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ +PD+ ++ +I A + +GK++EAM+++ M++ P + T+ +I+GF G P
Sbjct: 105 EENGVKPDSILFNAMINAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRP 164
Query: 194 ADAMNIYEDMIKSPD-PPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+AM + E MI+ + P E + IL++ K + EE + H
Sbjct: 165 HEAMKLLEMMIQDGNVKPNERTYNILIQAWC--------TKNELEEAWNVMH 208
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV IF+ + ++ ++P Y L+ AL R + N + + + + PDS + +I
Sbjct: 62 AVTIFNSL-TEEGHKPTIITYTTLVAALTRLKRFNSIPSLLSKVEENGVKPDSILFNAMI 120
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL----LPHPLLR 229
F G +AM I+ M + P F L+KG PH ++
Sbjct: 121 NAFSDSGKVHEAMKIFRKMKECGCKPTTSTFNTLIKGFGIVGRPHEAMK 169
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y ++ A + +G M+ ++++ M K ++ PD Q Y+ + +G+++ G P A
Sbjct: 323 KPDVVTYSTIMNAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEA 382
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M K + F ++ G
Sbjct: 383 LLNSMTKYGLQANVVIFTTIISG 405
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADA 196
QPD Y L A A+ G+ + A ++ M++ + + P+ +T +IRG+ K+G+ +A
Sbjct: 216 QPDIVTYNTLARAFAQNGETDNAERLILKMQQYNNKVKPNERTCGIIIRGYCKEGNMTEA 275
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P + F L+KG L
Sbjct: 276 LRFLYKMKELGVHPNPVVFNSLIKGYL 302
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y ++ L G++++A +V++ M +E P TY +I+ K G+ DA+
Sbjct: 282 KPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVA 341
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+++DMI+ P + + +L++GL
Sbjct: 342 VFDDMIRKGYIPNVVTYTVLIRGLC 366
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
AV +FD +IRK Y P+ Y LI L GK++ AM++ + M++E P+ QTY +
Sbjct: 339 AVAVFDDMIRK--GYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVL 396
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
I ++G A++++E M K + P + + I++ +
Sbjct: 397 IGYLFEEGDIEKALHLFETMSKGEECLPNQDTYNIIISAMF 437
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + ++ P Y LI + G + +A+ V++ M ++ P+ TYT +I
Sbjct: 304 ARKVFDEMSREGC-TPSIATYNALIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLI 362
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL-----KGLLPHPLLRSKVKKDFEEL 239
RG G AM + + M + P + +L+ +G + L + EE
Sbjct: 363 RGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDIEKALHLFETMSKGEEC 422
Query: 240 FPEKHAYD 247
P + Y+
Sbjct: 423 LPNQDTYN 430
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PDA Y L R + A+ + M + + P TY +++GF + G A
Sbjct: 206 FPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAW 265
Query: 198 NIYEDMIK--SPD---PPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ + M K S D P+ + + +L GL L K +K F+E+ E
Sbjct: 266 DFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQL-DKARKVFDEMSRE 314
>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
Length = 658
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+Y Y LI LA++G+M++A +++ M + TYT +I G K+ +A+
Sbjct: 467 FVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEAL 526
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
++ MI P FR L GL S+ + +EL P
Sbjct: 527 KFWDAMIDKGITPTAAAFRTLASGLCLSGKF-SRACRILDELAP 569
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ Y ++ L R GK++EA+ + S +++ + ++ YT +I GF K G + ++
Sbjct: 400 DSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELF 459
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
E+MI P+ + +L+ GL
Sbjct: 460 EEMIAKGFVPDSYCYNVLIDGL 481
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
AV +FD + +D +PD Y LI R G+ ++AM M+++ L PD TY +
Sbjct: 241 AVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTL 300
Query: 184 IRGFLKDGSPADAMNIYEDM 203
++ +G+ + ++++M
Sbjct: 301 MQCHYSEGTFPVCIGLFQEM 320
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L + +E AV F +++ +A Y LI + G ++++ +++E M
Sbjct: 407 IVNCLCRFGKLDE---AVACFRSCQEKG-IAVNAIFYTSLIDGFGKAGMVDQSKELFEEM 462
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ PDS Y +I G K G DA +Y+ M + IL+ GL
Sbjct: 463 IAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGL 516
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ QPD + Y I A ++ G M A + E M+ + P+ +TYT +I G+ + P
Sbjct: 360 KREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLP 419
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
A++ +E+M S P+ + L+ LL
Sbjct: 420 EKALSCFEEMKLSGLKPDRAVYHCLMTSLLS 450
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 125 AVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A IF D+I+ D +PD +Y ++I A GKM+ A+ + M+K+ P ++T+ +
Sbjct: 142 AFAIFEDLIK--DGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPI 199
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF--- 240
I GF + G A+++++ M S P + L+ GL+ + K ++ +E+
Sbjct: 200 IHGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKME-KAEQILDEMTLAG 258
Query: 241 --PEKHAY 246
P +H Y
Sbjct: 259 VSPNEHTY 266
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 47/90 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ P Y LI A+ GK+++A++V + M + + +TY+ +I GFLK
Sbjct: 80 KECGLNPSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDW 139
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+A I+ED+IK P+ + + ++
Sbjct: 140 ANAFAIFEDLIKDGIKPDVVLYNNIITAFC 169
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ +IY LI AR G + EA + + M++E + PD TYT I K G A
Sbjct: 332 NTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTI 391
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
E+M P + L+ G LP L + L P++ Y
Sbjct: 392 EEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVY 441
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 104 LLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
+L +I+ + + + + VK R ++P + +I AR G+M +A+
Sbjct: 159 VLYNNIITAFCGMGKMDRAVCTVKEMQKQR----HKPTTRTFMPIIHGFARKGEMKKALD 214
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
V++ MR P TY +I G ++ A I ++M + P E + ++ G
Sbjct: 215 VFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHG 272
>gi|449451631|ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 528
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 68 GKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE-LERQEETILAV 126
G K EA ++ G+ R D+E L K + +V R+++ + +L E L ++++ + +
Sbjct: 53 GVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYV-RVMRTEHCFLLFEELGKRDKWLECL 111
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++F ++KQ WY D +Y LI + + G++ AM ++ MR PD+ Y +I
Sbjct: 112 EVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITA 171
Query: 187 FLKDGSPADAM 197
L A A+
Sbjct: 172 HLHSKDKAKAL 182
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 44/78 (56%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I L + GKM+EAM +E MR + P+ TYT ++ + K G+ +A ++++M+
Sbjct: 690 YTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMV 749
Query: 205 KSPDPPEELPFRILLKGL 222
S P+ + + L+ G
Sbjct: 750 SSGIVPDNVSYNTLVTGF 767
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+IRK ++PDAY++ +I A GKM EA+ + M+ E + PD +Y +I G+ K
Sbjct: 537 DMIRKG--FKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCK 594
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
A +++ P + + L+ G
Sbjct: 595 AKDIQKANEYLNELMACGLKPNAVIYNALIGG 626
Score = 43.5 bits (101), Expect = 0.078, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 40/81 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y L+ + G ++EA ++E RK + YT +I+G K G +AMN
Sbjct: 649 QPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMN 708
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+E+M PP ++ + L+
Sbjct: 709 YFEEMRSRSIPPNKITYTTLM 729
Score = 40.0 bits (92), Expect = 0.98, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 2/114 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A+L L R K+FD +R P+ Y Y +I AL + GK+++ ++ +
Sbjct: 198 ALLEALARTGNLGATCKVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIH 257
Query: 171 EDLFPDSQT--YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
L + Y ++ K G +A+ + M +S P + F IL+ GL
Sbjct: 258 AGLQQSAGAVPYNLLMDALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGL 311
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+E+ A++++D ++K P + LI L GK AM+ ++ + + L PD
Sbjct: 498 REEKVEKALEMWDEMKKVK-ITPTVSTFNSLIGGLCHHGKTELAMEKFDELAESGLLPDD 556
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T+ +I G+ K+G A Y + IK P+ ILL GL
Sbjct: 557 STFNSIILGYCKEGRVEKAFEFYNESIKHSFKPDNYTCNILLNGLC 602
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y ++ A+++ G++++ ++ M+K L P+ TY ++ G+ K GS +A
Sbjct: 237 NPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQ 296
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
I E M ++ P+ + IL+ GL +R
Sbjct: 297 IVELMKQTNVLPDLCTYNILINGLCNAGSMR 327
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ P+ Y +L+ + G + EA Q+ E M++ ++ PD TY +I G GS
Sbjct: 267 KKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGSM 326
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ + + + M P+ + + L+ G
Sbjct: 327 REGLELMDAMKSLKLQPDVVTYNTLIDGC 355
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI+ R K+ +A+++W+ M+K + P T+ +I G G AM +
Sbjct: 485 DEVTYGTLIMGFFREEKVEKALEMWDEMKKVKITPTVSTFNSLIGGLCHHGKTELAMEKF 544
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDP 248
+++ +S P++ F ++ G +V+K F E + E KH++ P
Sbjct: 545 DELAESGLLPDDSTFNSIILGYCK----EGRVEKAF-EFYNESIKHSFKP 589
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +I +++ KQ PD Y LI L G M E +++ ++M+ L PD TY +I
Sbjct: 294 AFQIVELM-KQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLI 352
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G + G +A + E M ++ I LK L R V + +EL + H
Sbjct: 353 DGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEE-KREAVTRKVKELV-DMH 410
Query: 245 AYDP 248
+ P
Sbjct: 411 GFSP 414
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L +T LA++ FD + + PD + +I+ + G++ +A + + K P
Sbjct: 531 LCHHGKTELAMEKFDELAESGLL-PDDSTFNSIILGYCKEGRVEKAFEFYNESIKHSFKP 589
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
D+ T ++ G K+G A+N + +I+
Sbjct: 590 DNYTCNILLNGLCKEGMTEKALNFFNTLIE 619
>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
Length = 517
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y +I AL + M++AM+V +M K + PD TY ++ G+ G P +A+
Sbjct: 373 SPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 432
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ M P + +R L+ L + ++ +K F+ +
Sbjct: 433 TLKKMRSDGVEPNVVTYRSLMNYLCKNGRC-TEARKIFDSM 472
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
K + E L + I +V+ I+A L + + ++ A+++ + + K + PD
Sbjct: 359 KAYSTYHEMLDRRISPNVVTY--SSIIAALCKAQAMDK---AMEVLNTMVK-NGVMPDCM 412
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y ++ +G+ EA+ + MR + + P+ TY ++ K+G +A I++ M
Sbjct: 413 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSM 472
Query: 204 IKSPDPPEELPFRILLKG 221
K P+ +R LL+G
Sbjct: 473 TKRGLEPDIATYRTLLQG 490
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
+ D +P+ Y+ L+ L + G+ EA ++++SM K L PD TY +++G+ G+
Sbjct: 438 RSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGA 496
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + PD + L+ + G++++ ++++ M + + D+ TY +I
Sbjct: 559 ATQMFDSMGSKS-FSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLI 617
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
GF K G+ A++I+++MI S P+ + R +L L L+ V
Sbjct: 618 HGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAV 665
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 53/100 (53%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+T+ A+ + + + +P+ IY +I L + G+ ++A ++ M+++ +FPD TY
Sbjct: 228 DTVSALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTY 287
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+I GF G ++A + ++M++ P + + L+
Sbjct: 288 NCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALIN 327
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + + LI ++++ ++ M + L D+ TY +I GF G A++
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALD 445
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ + MI S P+ + LL GL + L KD E+F
Sbjct: 446 LSQQMISSGVCPDIVTCNTLLDGLCDNGKL-----KDALEMF 482
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L + +++EA Q+++SM + PD T+ ++ G+ K G D + +
Sbjct: 538 PNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLEL 597
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M + + + + L+ G
Sbjct: 598 FCEMGRRGIVADAITYITLIHGF 620
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
D R + +PD Y LI L GK EA ++++ M + P++ TY+ +I G
Sbjct: 492 LDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLC 551
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
K +A +++ M P+ + F L+ G
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSG 584
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL-----------FPDSQTYTEVIRGFL 188
PD L+ L GK+ +A++++++M+K + PD QTY +I G +
Sbjct: 457 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLI 516
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G +A +Y++M P + + ++ GL L
Sbjct: 517 NEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRL 556
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A+ F I K +QPD + L+ L +++EA+ ++ M + P+ T+T +
Sbjct: 130 FALSTFGKITKL-GFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCR----PNVVTFTTL 184
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G ++G +A+ + + M++ P ++ + ++ G+
Sbjct: 185 MNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 224
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I +G+ +EA ++ + M + + P+ TY+ +I ++K+ +A +
Sbjct: 282 PDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEEL 341
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y++M+ P + + ++ G
Sbjct: 342 YDEMLPRGIIPNTITYNSMIDGFC 365
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y LI A + K EA ++++ M + P++ TY +I GF K A +
Sbjct: 316 NPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEH 375
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P+ F L+ G
Sbjct: 376 MFYVMATKGCSPDVFTFNTLIDG 398
>gi|224061569|ref|XP_002300545.1| predicted protein [Populus trichocarpa]
gi|222847803|gb|EEE85350.1| predicted protein [Populus trichocarpa]
Length = 567
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 111 AVLIELERQEETILAVKI-FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
V+ L R+ T A ++ +++I Q + PD Y Y LI L G ++EA++++ +
Sbjct: 416 GVISSLCRKGNTYPAFQLLYEMI--QSGFVPDPYTYSSLIRGLCVEGMLDEALEIFRLLE 473
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ D P + +I GF K G ++ I+E MI P E + IL++G+
Sbjct: 474 ENDYRPILGNFNALILGFCKSGRTDLSLEIFEMMILKGYTPNETTYTILVEGI 526
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+RK ++PD L+ L ++ KM +A +V E + + PD+ +YT ++ K
Sbjct: 88 IVRK--GHKPDVAQATQLLYDLCKSNKMKKATRVMEMTIESGIIPDAASYTFLVNNLCKR 145
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
G+ AM + E M ++ P + + L++GL H L ++
Sbjct: 146 GNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQ 188
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y L+ L + G + AMQ+ E M + ++ TY ++RG K G+ ++ +
Sbjct: 130 PDAASYTFLVNNLCKRGNIGYAMQLVEKMEENGCPTNTVTYNSLVRGLCKHGNLNQSLQL 189
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +++ P E LL+
Sbjct: 190 LDKLMRKGLVPNEFTHSFLLEA 211
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 46/90 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ + Y L+ L + G +N+++Q+ + + ++ L P+ T++ ++ K+
Sbjct: 159 EENGCPTNTVTYNSLVRGLCKHGNLNQSLQLLDKLMRKGLVPNEFTHSFLLEAAYKERGV 218
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+AM + + +I P + + +LL GL
Sbjct: 219 DEAMKLLDGIIAKGGKPNLVSYNVLLTGLC 248
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIR----KQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
+ +AVL E R + + F II+ KQ+ D Y+ +I +L R G A Q
Sbjct: 381 NAIAVLCEGGRVQ------RAFSIIQSLGNKQNSSTHD--FYRGVISSLCRKGNTYPAFQ 432
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ M + PD TY+ +IRG +G +A+ I+
Sbjct: 433 LLYEMIQSGFVPDPYTYSSLIRGLCVEGMLDEALEIF 469
>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 721
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 10/142 (7%)
Query: 85 RFKDDEEKLQKFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWY--QP 140
RFKD + ++ R + MD+V A+LI+ +E A +F ++++ + +P
Sbjct: 452 RFKDAVSACRVMVE----RGVAMDLVCYAILIDGTAREHDTRA--LFGLLKEMHNHGLRP 505
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA IY ++I ++ G + EA +W+ M E P+ TYT +I G K G A +
Sbjct: 506 DAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLS 565
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++ + S P + + L L
Sbjct: 566 KETLVSDVTPNHITYGCFLDHL 587
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI G+ ++A +V+ M + + P++ T+T +I G + A+A+ +
Sbjct: 295 PTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRL 354
Query: 200 YEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
+ +M + P E+ + ++++G LL V K F P+ + Y P
Sbjct: 355 FGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGF---VPDTYTYRP 407
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y Y+ LI L G+++EA + + + K+ ++ Y+ ++ G+ K+G DA+
Sbjct: 398 FVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAV 457
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+ M++ + + + IL+ G
Sbjct: 458 SACRVMVERGVAMDLVCYAILIDG 481
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
Y Y LI + G + A ++ M + L P TYT +I G+ +G A +Y +
Sbjct: 263 YPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNE 322
Query: 203 MIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
M P F ++ GL ++ ++
Sbjct: 323 MTAKGISPNTYTFTAIISGLCRANMMAEAIR 353
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI R GK+ EA ++ M D+ PD TY+ +I K + +A+ ++ M+
Sbjct: 614 YNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTML 673
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
P+ L + L+ G + +++K FE
Sbjct: 674 DKGLKPDTLAYSFLVHGC----CIAGELEKAFE 702
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
A++ L R A+++F ++++ P Y +I R+G ++EA + + M
Sbjct: 336 TAIISGLCRANMMAEAIRLFGEMKERK-IMPSEVTYNVMIEGHCRSGNISEAFHLLDEMV 394
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ PD+ TY +I G G ++A +D+ K + + L+ G
Sbjct: 395 GKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHG 446
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I + + EA+++W +M + L PD+ Y+ ++ G G A +
Sbjct: 644 PDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFEL 703
Query: 200 YEDMIK 205
++MI+
Sbjct: 704 RDEMIR 709
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A + LI + +T KM+EAM+++ M+ D TYT +I GF K G+ A I
Sbjct: 337 PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDKAYEI 396
Query: 200 YEDMIKSPDPPEELPFRILL 219
+DMI+ P +L + ++
Sbjct: 397 LDDMIQKGHDPSQLSYLCIM 416
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 54/105 (51%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+E I+ K + K+ ++PD +Y +L+ A+ GKM +A + M+K + P++
Sbjct: 281 REGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAA 340
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++T +I+ F K +AM I+ +M S + + + L+ G
Sbjct: 341 SFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFC 385
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
++ + +++ E++EE +++ + +RK PD IY +I + + G + EA+++W
Sbjct: 409 QLSYLCIMMAHEKKEELEECMELIEEMRKIGCV-PDLNIYNTMIRLVCKLGDLKEAVRLW 467
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
M+ L P TY ++ GFL G +A + +++M++
Sbjct: 468 GEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDYFKEMVE 507
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++ D + K +PD Y++ L+ AL + G + EA ++E MR P+ + +T ++
Sbjct: 219 AVEVLDEMPKYG-CEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVR-FNPNLRHFTSLL 276
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ ++G +A ++ + ++ P+ + + LL G
Sbjct: 277 YGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGG 313
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+ +R + + P+ + L+ R GK+ EA V +++ PD Y ++
Sbjct: 254 AASLFEDMRVR--FNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLL 311
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ + G DA ++ +M K P F IL++
Sbjct: 312 GGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFC 350
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L +Q + + A +F+ + Q + + IY LI + ++ G M EAM+++E M+ E
Sbjct: 329 VIGGLCKQRKCMEAYAVFETM-NQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNE 387
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
PD+ TY+ ++ G K G D M +++
Sbjct: 388 GFEPDAVTYSVLVNGLCKSGRLDDGMELFD 417
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ + K + ++PDA Y L+ L ++G++++ M++++ R + + ++ Y +I
Sbjct: 377 AMRLFERM-KNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLI 435
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K G DA N++E+M + + + ++ L H
Sbjct: 436 DGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKH 476
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+Y Y +I ALA+ GK+++A+ ++ M +E T+T +I G K+ +A+ +
Sbjct: 462 DSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFW 521
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+ MI P FR L GL
Sbjct: 522 DKMIDKGITPTVASFRALAIGLC 544
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I L + K EA V+E+M ++ + YT +I + K+GS +AM ++E M
Sbjct: 326 YSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMK 385
Query: 205 KSPDPPEELPFRILLKGLL 223
P+ + + +L+ GL
Sbjct: 386 NEGFEPDAVTYSVLVNGLC 404
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ P Y Y L+ L + + A +V+E M + PD+ TY +I+G+ K G
Sbjct: 210 KENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKL 269
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
AM + DM P+++ + L++
Sbjct: 270 QKAMEKFRDMEMKNVKPDKITYMTLIQAC 298
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L+E R+ E I V +F I QD +P+A Y L+ AL RTGK+++A M +E
Sbjct: 9 LLERARRSEQI--VVVFRRIFSQDC-KPNALSYCYLVKALCRTGKIDKACSTIAEMAREK 65
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
L PD TY VI K + A+ +E M P+ P+ + + LL GL +
Sbjct: 66 LVPDVFTYNVVIDTLCKARRISRAIEFFETM---PE-PDVVTYNTLLGGLCKN 114
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y Y +I L + K+++A Q++E M+ PD TY +I G +A +
Sbjct: 168 SPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKD 227
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M+++ P+++ F L++GL
Sbjct: 228 LLTVMVENGFQPDKITFTALIEGLC 252
>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
Length = 1563
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
K+ V+ L ++ I A FD ++ D ++PD +Y L+ R G ++EA +V+
Sbjct: 1248 KIAFSVVISSLSKKRRAIEAQSFFDSLK--DRFEPDVVVYTSLVHGWCRAGNISEAERVF 1305
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
M+ + P+ TY+ VI + G A +++ +MI P + F L++
Sbjct: 1306 GEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMR 1360
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 41/81 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y +I AL R+G++ A V+ M P++ T+ ++R +K G + +
Sbjct: 1315 PNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQV 1374
Query: 200 YEDMIKSPDPPEELPFRILLK 220
Y M + PP+ + + L++
Sbjct: 1375 YNQMKRLGCPPDAITYNFLIE 1395
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G++++ ++++ M + + ++ TY +I
Sbjct: 565 ATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K G+ A++I+++MI S P+ + R +L GL
Sbjct: 624 CGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ ++ +T+ A+ + + + P+ IY +I +L + G+ ++A ++ M+++ +FP
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK---SPD------------------PPEELP 214
D TY +I GF G +DA + ++M++ SPD EEL
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348
Query: 215 FRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+L +G++P+ + S + F +++ D E +F
Sbjct: 349 DEMLPRGIIPNTITYSSMIDG----FCKQNRLDAAEHMF 383
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+T +I G+ K G D + +
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICG 625
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 AVKIFDIIRKQ----------DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
A+++F +++K + +PD Y LI L GK EA +++E M +
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD+ TY+ +I G K +A +++ M P + F L+ G
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A + GK EA ++++ M + P++ TY+ +I GF K A +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P + F L+ G
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDG 404
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI ++++ M++ M + L D+ TY +I GF G A++
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR---------SKVKKDFEELFP 241
+ ++MI S P+ + LL GL + L+ K KKD + P
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
++ V++ +ER + L + ++ + RKQ + D Y + LI K+ A+ +
Sbjct: 85 LMGVVVRMERPD---LVISLYQKMERKQ--IRCDIYSFTILIKCFCSCSKLPFALSTFGK 139
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K L PD T+ ++ G + ++A+N++ M ++ P + F L+ GL
Sbjct: 140 ITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRK-----------EDLFPDSQTYTEVIRGFL 188
PD L+ L GK+ +A+++++ M+K + PD QTY +I G +
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G +A +YE+M P+ + + ++ GL L
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562
>gi|302826103|ref|XP_002994591.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
gi|300137362|gb|EFJ04342.1| hypothetical protein SELMODRAFT_138844 [Selaginella moellendorffii]
Length = 599
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD IY L+ A + G+M++A+ V E++ L P +TYT ++ G++K G+ A+
Sbjct: 259 KPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 318
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+++ + + P + + LL GL
Sbjct: 319 VFDRIKTAGLRPGVVSYNSLLSGL 342
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ D Y I A R+G E + MR++ L +++TYT +I G+L P A+
Sbjct: 468 FHLDTICYTSFIKACFRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAADPDQAI 527
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ YE S + LL GL+ S + + + + E
Sbjct: 528 SCYEQAKASGLQLDSALSNCLLSGLISCASQNSTLGEKIQAISAE 572
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA----VLIELERQEETILAVKIFDIIRK 134
V+ G +D+E+ L F H L+ + A +++L + + K DI+ +
Sbjct: 163 VLNGFAEIRDEEKCLSFF---HRLKACGLSPTAATYGCIVKLFTKAGNM--AKALDILEE 217
Query: 135 QDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192
D + P+ IY ++ AR G A +VWE M L PD Y ++ F K G
Sbjct: 218 MDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNILVHAFCKAGR 277
Query: 193 PADAMNIYEDM 203
A+ + E++
Sbjct: 278 MDKALGVLENI 288
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD I K +P Y L+ LA+ +M A + M + P+ ++YT +
Sbjct: 316 ALEVFDRI-KTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPNERSYTALT 374
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G+ + G A +++ M K E L I+ G L +S + E+F +
Sbjct: 375 EGYARAGDVEKAFGMFQRMKK-----ENLAIDIVAYGALLKACCKSGAMQRAAEVFQQ 427
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 46/83 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L R K N+A W+ M+K+ L P++ TYT +I G K G+ A+A ++
Sbjct: 755 PNHITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSL 814
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E + P+ + +++GL
Sbjct: 815 FERFKANGGVPDSASYNAIIEGL 837
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L + G++++A +++E M D P++ YT +I+ F K G D I
Sbjct: 475 PDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKI 534
Query: 200 YEDMIK---SPD 208
+++MI SPD
Sbjct: 535 FKEMIHRGCSPD 546
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 7/132 (5%)
Query: 112 VLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
VLI+ L + E A K+ D +++ + P+ +I L + K++EA ++E M
Sbjct: 412 VLIDMLCKAGEVEAAFKVRDAMKEAGLF-PNVMTVNIMIDRLCKAKKLDEACSIFEGMNH 470
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ PD T+ +I G K G DA +YE M+ S P + + L+K +
Sbjct: 471 KICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKS-----FFKC 525
Query: 231 KVKKDFEELFPE 242
K+D ++F E
Sbjct: 526 GRKEDGHKIFKE 537
Score = 43.5 bits (101), Expect = 0.081, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 7/116 (6%)
Query: 97 IKTHVL---RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153
IK+H L + ++ VL + R +E AV+IF+ + +Q+ P AY Y +I+
Sbjct: 294 IKSHGLLPDDVTYTSMIGVLCKGNRLDE---AVEIFEQM-EQNRNVPCAYAYNTMIMGYG 349
Query: 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
GK +EA + E + P Y ++ K G +A+ +E+M K P
Sbjct: 350 SAGKFDEAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAP 405
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ F+ ++K P+ Y LI L + G++ A +V ++M++ LFP+ T +I
Sbjct: 392 ALRTFEEMKKDA--APNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMI 449
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K +A +I+E M P+E+ F L+ GL
Sbjct: 450 DRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGL 487
Score = 40.4 bits (93), Expect = 0.68, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 9/123 (7%)
Query: 102 LRLLK--MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159
LRLL MD V + ET +F+ I+ + + PD Y LI L + G
Sbjct: 547 LRLLNAYMDCVF------KAGETGKGRALFEEIKSRG-FIPDVMSYSILIHGLVKAGFAR 599
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
E +++ +M+++ D+ Y I GF K G A + E+M P + + ++
Sbjct: 600 ETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659
Query: 220 KGL 222
GL
Sbjct: 660 DGL 662
Score = 40.0 bits (92), Expect = 0.84, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I LA+ G + EA ++E + PDS +Y +I G +A
Sbjct: 789 KPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLSYSRRAMEAYK 848
Query: 199 IYED 202
I+E+
Sbjct: 849 IFEE 852
Score = 38.9 bits (89), Expect = 1.8, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + D +Y I + GK++ A + + ++ L PD TYT +I K
Sbjct: 260 KSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCKGNRL 319
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A+ I+E M ++ + P + ++ G
Sbjct: 320 DEAVEIFEQMEQNRNVPCAYAYNTMIMG 347
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I +L+ G + A+ VW M P+ T+T +++G+ G +A+NI
Sbjct: 282 PNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNI 341
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ M + P + + L+ GL H + V + E++ P +G L
Sbjct: 342 WNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSK---MERNGCSPNVSTYGAL 395
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ ++P+ Y LI L GKM EA+ V M + P+ TY +I GF K G
Sbjct: 347 EEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLV 406
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD--PPEEI 252
A I+ M+ + P + + ++ + L RS + L EK + D PP +
Sbjct: 407 GASEIWNKMMTNGCIPNVVVYTSMV-----NVLCRSSMFSQAWSLI-EKMSTDNCPPNTV 460
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ P+ Y LI A+ G + A ++W M P+ YT ++ +
Sbjct: 381 ERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMF 440
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ A ++ E M PP + F +KGL + + LF + Y I
Sbjct: 441 SQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAIN-----LFCQMEQYGCSPNI 494
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y + L+ G++ EA+ +W M +E P+ Y +I G G +A++
Sbjct: 316 SPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVS 375
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M ++ P + L+ G
Sbjct: 376 VSSKMERNGCSPNVSTYGALIDG 398
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G++++ ++++ M + + ++ TY +I
Sbjct: 565 ATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K G+ A++I+++MI S P+ + R +L GL
Sbjct: 624 CGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 28/153 (18%)
Query: 125 AVKIFDIIRKQDWYQ---PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
V D++RK + P+ IY +I +L + G+ ++A ++ M+++ +FPD TY
Sbjct: 235 TVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYN 294
Query: 182 EVIRGFLKDGSPADAMNIYEDMIK---SPD------------------PPEELPFRILLK 220
+I GF G +DA + ++M++ SPD EEL +L +
Sbjct: 295 SMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPR 354
Query: 221 GLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
G++P+ + S + F +++ D E +F
Sbjct: 355 GIIPNTITYSSMIDG----FCKQNRLDAAEHMF 383
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+T +I G+ K G D + +
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICG 625
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 AVKIFDIIRKQ----------DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
A+++F +++K + +PD Y LI L GK EA +++E M +
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD+ TY+ +I G K +A +++ M P + F L+ G
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A + GK EA ++++ M + P++ TY+ +I GF K A +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P + F L+ G
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDG 404
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI ++++ M++ M + L D+ TY +I GF G A++
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR---------SKVKKDFEELFP 241
+ ++MI S P+ + LL GL + L+ K KKD + P
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
++ V++ +ER + L + ++ + RKQ + D Y + LI K+ A+ +
Sbjct: 85 LMGVVVRMERPD---LVISLYQKMERKQ--IRCDIYSFTILIKCFCSCSKLPFALSTFGK 139
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K L PD T+ ++ G + ++A+N++ M ++ P + F L+ GL
Sbjct: 140 ITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRK-----------EDLFPDSQTYTEVIRGFL 188
PD L+ L GK+ +A+++++ M+K + PD QTY +I G +
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G +A +YE+M P+ + + ++ GL L
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G++++ ++++ M + + ++ TY +I
Sbjct: 565 ATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K G+ A++I+++MI S P+ + R +L GL
Sbjct: 624 CGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ ++ +T+ A+ + + + P+ IY +I +L + G+ ++A ++ M+++ +FP
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK---SPD------------------PPEELP 214
D TY +I GF G +DA + ++M++ SPD EEL
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348
Query: 215 FRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+L +G++P+ + S + F +++ D E +F
Sbjct: 349 DEMLPRGIIPNTITYSSMIDG----FCKQNRLDAAEHMF 383
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+T +I G+ K G D + +
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICG 625
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 AVKIFDIIRKQ----------DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
A+++F +++K + +PD Y LI L GK EA +++E M +
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD+ TY+ +I G K +A +++ M P + F L+ G
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
++ V++ +ER + L + ++ + RKQ + D Y + LI K+ A+ +
Sbjct: 85 LMGVVVRMERPD---LVISLYQKMERKQ--IRCDIYSFNILIKCFCSCSKLPFALSTFGK 139
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K L PD T+T ++ G + ++A+N++ M ++ P + F L+ GL
Sbjct: 140 ITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLC 195
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A + GK EA ++++ M + P++ TY+ +I GF K A +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P + F L+ G
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDG 404
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI ++++ M++ M + L D+ TY +I GF G A++
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR---------SKVKKDFEELFP 241
+ ++MI S P+ + LL GL + L+ K KKD + P
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRK-----------EDLFPDSQTYTEVIRGFL 188
PD L+ L GK+ +A+++++ M+K + PD QTY +I G +
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G +A +YE+M P+ + + ++ GL L
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + P+ + LI + G++++ ++++ M + + ++ TY +I
Sbjct: 565 ATQMFDSMGSKS-FSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K G+ A++I+++MI S P+ + R +L GL
Sbjct: 624 CGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 25/159 (15%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
+ ++ +T+ A+ + + + P+ IY +I +L + G+ ++A ++ M+++ +FP
Sbjct: 229 MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFP 288
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK---SPD------------------PPEELP 214
D TY +I GF G +DA + ++M++ SPD EEL
Sbjct: 289 DLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELY 348
Query: 215 FRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+L +G++P+ + S + F +++ D E +F
Sbjct: 349 DEMLPRGIIPNTITYSSMIDG----FCKQNRLDAAEHMF 383
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + P+ T+T +I G+ K G D + +
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLEL 603
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M + + + L+ G
Sbjct: 604 FCEMGRRGIVANAITYITLICG 625
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 AVKIFDIIRKQ----------DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
A+++F +++K + +PD Y LI L GK EA +++E M +
Sbjct: 484 ALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIV 543
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
PD+ TY+ +I G K +A +++ M P + F L+ G
Sbjct: 544 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI A + GK EA ++++ M + P++ TY+ +I GF K A +
Sbjct: 322 SPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M P + F L+ G
Sbjct: 382 MFYLMATKGCSPNLITFNTLIDG 404
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI ++++ M++ M + L D+ TY +I GF G A++
Sbjct: 392 SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALD 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR---------SKVKKDFEELFP 241
+ ++MI S P+ + LL GL + L+ K KKD + P
Sbjct: 452 LLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 6/116 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
++ V++ +ER + L + ++ + RKQ + D Y + LI K+ A+ +
Sbjct: 85 LMGVVVRMERPD---LVISLYQKMERKQ--IRCDIYSFNILIKCFCSCSKLPFALSTFGK 139
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ K L PD T+T ++ G + ++A++ + M ++ P + F L+ GL
Sbjct: 140 ITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLC 195
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 11/100 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRK-----------EDLFPDSQTYTEVIRGFL 188
PD L+ L GK+ +A+++++ M+K + PD QTY +I G +
Sbjct: 463 PDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLI 522
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+G +A +YE+M P+ + + ++ GL L
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRL 562
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
M + ++ L Q AV + D + K WY D Y Y LI L +TG A+
Sbjct: 148 MTLTTLINGLCVQGNVAQAVGLADHMEKM-WYPLDVYTYGVLINGLCKTGDTLAAVGWLR 206
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M + + P+ Y+ ++ G KDG ++A+N+ +M P + + L++GL
Sbjct: 207 KMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLC 263
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F ++ + PD ++ LI + +N+AM + E M K PD T+T +I
Sbjct: 341 AMRVFHLMVSRG-RLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLI 399
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
GF + G P A ++ +M K P ++L GL LL V
Sbjct: 400 GGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVS 448
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI KMNEAM+V+ M PD +T +I G+ KD + AM++
Sbjct: 320 PDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHL 379
Query: 200 YEDMIKSPDPPEELPFRILLKGLL--PHPLLRSKVKKDFEELFPEKHAY 246
E+M K P+ + L+ G PL +ELF H Y
Sbjct: 380 LEEMSKMGFVPDVATWTTLIGGFCQAGRPLAA-------KELFLNMHKY 421
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLI L + +T+ AV + +++W +P+ +Y ++ L + G ++EA+ + M
Sbjct: 186 GVLINGLCKTGDTLAAVGWLRKMEERNW-KPNVVVYSTIMDGLCKDGLVSEALNLCSEMN 244
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + P+ TY +I+G G +A ++ ++M+K P+ IL+
Sbjct: 245 GKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILV 294
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
IY L+ + GK+N A +++ S+ + L + YT +I+G K GS A ++ +M
Sbjct: 464 IYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINM 523
Query: 204 IKSPDPPEELPFRILLKGLLP 224
++ P + + ++GLL
Sbjct: 524 EENGCLPNNCTYNVFVQGLLT 544
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV IF+ + P A Y LI R G M+EA+++ M ++ PD TYT ++
Sbjct: 274 AVDIFE----EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLM 329
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F K G DA +++ M+ + P+ + F L+ GL
Sbjct: 330 SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLC 368
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD Y L+ A + G++++A ++++ M L PD T+T ++ G +G D
Sbjct: 316 DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 375
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
A+ + E++ + PP + ++ G
Sbjct: 376 ALELLEEITRRGCPPTIYTYNCVVDG 401
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D + PD Y L+ L++ G++ +A+QV + M PD+ T T V++
Sbjct: 142 NDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVD 201
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E+M+ + + L+ GL
Sbjct: 202 DARELVEEMLHRGMAANAITYSALVDGLC 230
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + L+ L G+M +A+++ E + + P TY V+ G+ K A
Sbjct: 354 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEE 413
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ D P + + IL+ G
Sbjct: 414 LVADFRSRGFVPNTVTYNILVAGCC 438
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L + EE++ VK+ K+ PDAY Y LI A R GK++ A++ + M
Sbjct: 226 LISSLCRDGKIEESVNLVKVM----KEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCM 281
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ PD Y ++ K+G+ A+ I+ + + PP + +L L
Sbjct: 282 ICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSAL 335
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+F+ + K + +P Y LI A G ++EA+++ + M L PD+ TY +
Sbjct: 97 LALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVI 156
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
RG K+G A + P+ + + ILL+ LL
Sbjct: 157 TRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQ 198
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L R G ++EA+ + M P+ +Y V+ G K DA+ +
Sbjct: 358 PDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEV 417
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
MI++ P E + +L++G+
Sbjct: 418 LAAMIENGCQPNETTYTLLIEGI 440
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI +L R GK+ E++ + + M+++ L PD+ Y +I F ++G A+
Sbjct: 217 EPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIE 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ MI P+ + + ++ L +
Sbjct: 277 FLDCMICDGFLPDIVNYNTIMAALCKN 303
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/100 (22%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ I+ K +PD + Y +I + ++ A V + M+++ PD T+ +I
Sbjct: 29 ATRVMGILEKHG--KPDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMI 86
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
F G A+ ++E+++K + P + + IL++ +
Sbjct: 87 GTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYI 126
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 4/114 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y + L + GK++ A + ++ PD TY ++R L G +
Sbjct: 147 EPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEK 206
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEE--LFPEKHAYDP 248
++ P + + IL+ L + V K +E L P+ + YDP
Sbjct: 207 WMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDP 260
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QP+ YK +++ L + ++++A++V +M + P+ TYT +I G GS AM
Sbjct: 391 FQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEGIGFSGSRTQAM 450
Query: 198 NIYEDM 203
+ +
Sbjct: 451 ELANSL 456
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ AL +G A+ + M + + PD TY +I +DG +A+ +
Sbjct: 323 PNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGL 382
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
DM+ P + ++ +L GL
Sbjct: 383 LADMLSGRFQPNIVSYKTVLLGLC 406
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF+ + D Y+PD Y LI L + G ++EA ++ M ++ L PD TY+ +I
Sbjct: 507 AIKIFEELEDSD-YKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLI 565
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K A ++++M+ P + + ILL L
Sbjct: 566 ECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCL 603
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQD PD + Y LI + R GK++EA++++E + D PD+ +Y +I K+G
Sbjct: 480 KQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHL 539
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A +++M + P+ + + L++
Sbjct: 540 DEAHMKFKEMCEKGLNPDVVTYSTLIE 566
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 71/144 (49%), Gaps = 1/144 (0%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWY 138
+++G +D +K IK LR+ ++ R T ++ ++K+ +
Sbjct: 184 ILIGFYENSEDLQKCIGLIKKWGLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKG-H 242
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
D + + L+ AL + +++ A +V+E M+++ PD TYT +IR K G P +++
Sbjct: 243 MLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRKHCEPDEYTYTIMIRMTGKIGKPDESLE 302
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E+M+ P + + +++ L
Sbjct: 303 LFEEMLNKGYSPNVIAYNTMIQAL 326
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 66 WRGKKLIGKEALFVILGLKRFKDDEEKLQKFI----KTHVLRLLKMDIVAVLIELERQEE 121
W G ++ G ++ R ++ E+ ++ K H+L + +++ L L + E
Sbjct: 205 W-GLRMTGYTYKCLVQAYLRSRNTEKGFAVYLEMKKKGHMLDIFAFNML--LDALVKDSE 261
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
A K+F+ ++++ +PD Y Y +I + GK +E+++++E M + P+ Y
Sbjct: 262 VDHAYKVFEDMKRKHC-EPDEYTYTIMIRMTGKIGKPDESLELFEEMLNKGYSPNVIAYN 320
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+I+ A+ ++ M++ P E + ++L
Sbjct: 321 TMIQALANARMVDKAILLFLKMVEKECRPSEFTYSVIL 358
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI +T K+ A ++++ M E +P+ TY ++ + G A+A++
Sbjct: 555 NPDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCYPNIVTYNILLDCLERSGRTAEAVD 614
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+Y + + P+ + + +L +
Sbjct: 615 LYAKLKQQGLIPDSITYSVLAR 636
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
V++L L +T A+ + I ++ D +Y + AL + +++ ++E M
Sbjct: 421 CVSMLECLCSAGKTTEAIDLLGKIHEKG-VSVDTVMYNTVFSALGKLKQISPLHDLYEKM 479
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+++ PD+ TY +I F + G +A+ I+E++ S P+ + L+ L + L
Sbjct: 480 KQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLINCLGKNGHL 539
Query: 229 ---RSKVKKDFEE-LFPEKHAYDPPEEIFGK 255
K K+ E+ L P+ Y E FGK
Sbjct: 540 DEAHMKFKEMCEKGLNPDVVTYSTLIECFGK 570
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ IY LI AL + G+ +E V E MR+ PD+ TY +I GF + A +
Sbjct: 253 DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL 312
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E+M+ P+ + + +++ GL
Sbjct: 313 EEMVVKGCKPDVISYNVIISGLC 335
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 92 KLQKFIKTHVLRL---LKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
+L+K + + LRL + ++A L ++ R++E + ++ +++ +PD Y +
Sbjct: 240 ELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEM----RENGCKPDTVTYNAM 295
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
I A V E M + PD +Y +I G K+G +A +++EDM +
Sbjct: 296 ISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGC 355
Query: 209 PPEELPFRILLKGLL 223
P+ +RIL GL
Sbjct: 356 TPDVGSYRILFDGLC 370
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 10/162 (6%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
E L+K +K V+ + ++ L+ +RQ E AVK+F++++ + P+ + Y LI
Sbjct: 353 NEMLEKGMKPDVV--VHNTMIEGLLRGQRQHE---AVKMFELMKAKG-PPPNVWTYTMLI 406
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
+ GKM+ AM+ +E M++ PD TYT ++ G+ + E+M + P
Sbjct: 407 CNHCKRGKMDMAMECFEEMQEARCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCP 466
Query: 210 PEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAYD 247
P+ + L+K L +P R K + L P H Y+
Sbjct: 467 PDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYN 508
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A++ F+ +++ QPD Y L++ +M+ V E M ++ PD++TY +
Sbjct: 417 MAMECFEEMQEARC-QPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNAL 475
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
I+ P DA IY+ MIK P + +++K
Sbjct: 476 IKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMK 512
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 85/179 (47%), Gaps = 12/179 (6%)
Query: 77 LFVILGLKR-FKDDEEKLQKFIKTHVLRLLKMDIVAVLIE-LERQEETILAVKIFDIIRK 134
+ +ILG R F+ LQ+ K L MD V I+ E AV +F+++RK
Sbjct: 232 MLLILGKTRQFESMVALLQEMGKAGTL---SMDAFKVAIKSFAAAGEIKNAVGVFELMRK 288
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ + + L++ALA G EA QV++ M + PD ++YT ++ + +
Sbjct: 289 -NGFDDGVESFNCLLVALANEGLGREARQVFDKMLGQ-YSPDLRSYTALMLAWCNARNLV 346
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+A ++ +M++ P+ + +++G LLR + + + ++F A PP ++
Sbjct: 347 EAGRVWNEMLEKGMKPDVVVHNTMIEG-----LLRGQRQHEAVKMFELMKAKGPPPNVW 400
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L+ L + A ++FD + Q Y PD Y L++A + EA +VW M +
Sbjct: 300 CLLVALANEGLGREARQVFDKMLGQ--YSPDLRSYTALMLAWCNARNLVEAGRVWNEMLE 357
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + PD + +I G L+ +A+ ++E M PP + +L+
Sbjct: 358 KGMKPDVVVHNTMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLI 406
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 156 GKMNEAM--QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
G N AM VWE M + + PD +YT I G ++ G P +A E+MI
Sbjct: 517 GDRNYAMGCAVWEEMHRRGICPDVNSYTVFISGHIRHGRPEEAYKYIEEMIN 568
Score = 36.6 bits (83), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG-FLKDGSP 193
Q PDA Y LI L ++A ++++ M K+ L P TY +++ FL D +
Sbjct: 462 QKGCPPDARTYNALIKLLTNRKMPDDAARIYKKMIKKGLDPTIHTYNMMMKSYFLGDRNY 521
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
A ++E+M + P+ + + + G + H
Sbjct: 522 AMGCAVWEEMHRRGICPDVNSYTVFISGHIRH 553
>gi|357159762|ref|XP_003578551.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Brachypodium distachyon]
Length = 534
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ ++L L ++ A +FD + + PD +Y L+ A R+G +++A QV+ M
Sbjct: 208 LASLLGALSKKRLASEAQALFDSYK--SVFTPDVVLYTTLVHAWCRSGCLDKAEQVFAEM 265
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ + P+ TYT VI + G A + MI S PP F +++
Sbjct: 266 QQAGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 318
>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 49/96 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ ++PD Y LI R G++++A ++ M + ++ PD +YT ++ G K+G
Sbjct: 276 EEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKV 335
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+A ++ MI P+ + F L+ G +R
Sbjct: 336 REAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMR 371
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + GK+ EA Q++ M L PD ++ +I G+ K+G ++ ++
Sbjct: 317 PDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSL 376
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+MI S P+++ ++L++G
Sbjct: 377 LHEMIGSGICPDKVTCQVLIEG 398
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P++Y + L + G +++ E M +E PD TY +I + + G DA
Sbjct: 246 HPNSYTFNILTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFY 305
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+Y M + P+ + + L+ GL +R
Sbjct: 306 LYRIMYRRNVLPDLVSYTALMNGLCKEGKVR 336
>gi|356520989|ref|XP_003529141.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like [Glycine max]
Length = 682
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++++ + +++ P Y +I L + G+ +E +++WE M+K + D TY+ +I
Sbjct: 237 AGEMWERLLREELVFPSVVSYNVMISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALI 296
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G A +YE+M+ P+ + +L GL
Sbjct: 297 HGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLC 335
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL-FPDSQTYTE 182
A+++FD +R++ +PD Y +I + G +A ++WE + +E+L FP +Y
Sbjct: 201 FALEVFDEMRERG-VEPDVVCYNMIIDGFFKRGDFVKAGEMWERLLREELVFPSVVSYNV 259
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+I G K G ++ + I+E M K+ + + L+ GL L +K +EE+
Sbjct: 260 MISGLCKCGRFSEGLEIWERMKKNERKCDLFTYSALIHGLSEAGDL-GGARKVYEEM 315
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI +A++G + A++V++ MR+ + PD Y +I GF K G A
Sbjct: 180 SPDRITYGTLIGGVAKSGDLGFALEVFDEMRERGVEPDVVCYNMIIDGFFKRGDFVKAGE 239
Query: 199 IYEDMIKSPDP-PEELPFRILLKGLL 223
++E +++ P + + +++ GL
Sbjct: 240 MWERLLREELVFPSVVSYNVMISGLC 265
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD +Y +I L +GK+ +A+Q++ ++R++ + T+ ++ GF K G+ A
Sbjct: 562 HKPDIIMYNIVIHRLCSSGKVEDALQLYSTLRQKKCV-NLVTHNTIMEGFYKVGNCEMAS 620
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLP 224
I+ +++ P+ + + I LKGL
Sbjct: 621 KIWAHILEDELQPDIISYNITLKGLCS 647
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ + D + Y LI L+ G + A +V+E M + PD T ++ G K G+
Sbjct: 281 KKNERKCDLFTYSALIHGLSEAGDLGGARKVYEEMVGRGVRPDVVTCNAMLNGLCKAGNV 340
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ ++E+M K + I LKGL +
Sbjct: 341 EECFELWEEMGKCS-LRNVRSYNIFLKGLFEN 371
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F + KQ Y+P+ Y LI L + ++NEA +++ + K L PD+ TYT I
Sbjct: 167 ALKLFGSVLKQ-GYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 225
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G DA+ + +DM + P+ + ++ GL
Sbjct: 226 DGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLC 264
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIFD K+ + PD Y LI + K++EA ++ + M E+L PD TY ++
Sbjct: 64 ALKIFDGAVKR-GFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLV 122
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
G K+G +A + D SP+ + + L+ GL S+ K F + K
Sbjct: 123 NGLCKNGRVDEARMLIVDKGFSPNV---ITYSTLISGLCRELRGVSEALKLFGSVL--KQ 177
Query: 245 AYDP 248
Y+P
Sbjct: 178 GYEP 181
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD Y L+ + G+++EA+++++ K PD TY +I GF K +A
Sbjct: 41 YSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQ 100
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
I + M+ P+ + + L+ GL +
Sbjct: 101 RILQRMVSENLVPDVVTYNSLVNGLCKN 128
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+RK ++ P+ Y L+ L G+M++A ++E M K PD TY ++ GF K G
Sbjct: 1 MRKHGFW-PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVG 59
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ I++ +K P+ + + L+ G
Sbjct: 60 ELDEALKIFDGAVKRGFVPDVVTYNALINGFC 91
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK---DGSPAD 195
P+A + LI R GK +AM ++ M K + P TY ++ G K +G +
Sbjct: 285 SPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKE 344
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A+ +++ MI+ P+ + + L+ GL
Sbjct: 345 AITLFDAMIEKGRVPDVVTYSALIDGL 371
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 118 RQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
RQE I A+ +FD + ++ PD Y LI L + GK+++A ++ +M + P+
Sbjct: 337 RQEGRIKEAITLFDAMIEKGRV-PDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPN 395
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
TY +I G +A+ ++ M++ P+ + + ++
Sbjct: 396 VYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 138 YQPDAYIYKDLIIALARTGK-MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ P+ Y LI L R + ++EA++++ S+ K+ P+ TY +I G LK+ +A
Sbjct: 143 FSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEA 202
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
++ ++K P+ + + + + GL
Sbjct: 203 FELFSGLVKHGLEPDAITYTVFIDGLC 229
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PDA Y I L + G++ +A+ + + M ++ PD ++ VI G K+ +A
Sbjct: 215 EPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEV 274
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M P + F L+ G
Sbjct: 275 LLSGMEAKGCSPNAISFNTLICG 297
>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 676
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L+E + A +F+++ K+ + + Y +LI L G+++E + +++ MR++D
Sbjct: 11 LVEANLNNDVNSAFSVFNMMPKKGCRRNEVS-YTNLIHGLCEVGRVDEGINIFKKMREDD 69
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+P +TYT ++ + G +A+N++ +M + P + +++ +
Sbjct: 70 CYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
YQPD YIY I A G + EA + M + + PD+ TYT VI + G A
Sbjct: 385 YQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAF 444
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
++ + M + P + L+K LL L +
Sbjct: 445 DVLKRMFDTGCDPSHHTYSCLIKHLLKEELTK 476
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L E R+ E A+ +F +R++ +P+ + Y +I A+ + K+ E ++ + M
Sbjct: 80 IVHALFESGRRME---AINLFSEMRERGC-EPNIHTYTVMINAMCKETKLEEGRRILDEM 135
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ L P TY +I G+ K+G A I + M + P E + L+ G
Sbjct: 136 VEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFC 190
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 69/151 (45%), Gaps = 11/151 (7%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+++ L E+ R +E + IF +R+ D Y P Y ++ AL +G+ EA+ ++
Sbjct: 44 NLIHGLCEVGRVDE---GINIFKKMREDDCY-PTVRTYTVIVHALFESGRRMEAINLFSE 99
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
MR+ P+ TYT +I K+ + I ++M++ P + L+ G +
Sbjct: 100 MRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGM 159
Query: 228 LRSKVKKDFEELFPEKH--AYDPPEEIFGKL 256
+ + +E+ H + +P E + +L
Sbjct: 160 VEAA-----QEILDLMHSNSCNPNERTYNEL 185
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + + IY LI + GKM++A + + M ED P+S TY +I G K+
Sbjct: 276 KEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKV 335
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ + E MI+ + IL+ +L
Sbjct: 336 QEALLLMESMIQKGLKCTVPTYTILIVAML 365
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI + G + A ++ + M P+ +TY E+I GF + + AM +
Sbjct: 142 PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMAL 201
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M++S P + + L+ G
Sbjct: 202 LSKMLESRLTPSVVTYNSLIHG 223
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A K+FD + ++ P IY L+ G +A+++ +M + P ++ +
Sbjct: 541 VAQKLFDHMNERG-VSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVL 599
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
G ++GS A ++ ++++ +E+ ++IL+ GLL + L
Sbjct: 600 FCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGL 643
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + D + +D P++ Y LI L + K+ EA+ + ESM ++ L TYT +I
Sbjct: 303 ANSLLDRMLTEDCL-PNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILI 361
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
LK+G A I + M+ S P+
Sbjct: 362 VAMLKEGDFDYAHRILDQMVSSGYQPD 388
>gi|357131120|ref|XP_003567190.1| PREDICTED: pentatricopeptide repeat-containing protein At3g13160,
mitochondrial-like [Brachypodium distachyon]
Length = 463
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + L+ + G+M++A VWE M+ +L PD+++Y +RG + +G DA+ +
Sbjct: 248 PDNISFNTLLNGFYQNGRMDDAEAVWEMMKGWNLEPDTKSYNAKLRGLVAEGRIEDAVAV 307
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E M K P+ + + L++G
Sbjct: 308 VERMEKEGPKPDTVSYNELIRG 329
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y + L G++ +A+ V E M KE PD+ +Y E+IRG+ G DA
Sbjct: 282 EPDTKSYNAKLRGLVAEGRIEDAVAVVERMEKEGPKPDTVSYNELIRGYCSAGRLEDAKK 341
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y+ ++K+ P + LL LL L V+
Sbjct: 342 LYDGLVKNECAPNRGTYETLLPRLLQAGELDCAVR 376
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 105 LKMDIVAVLIELERQEE-TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
M + AVL + +E LA +I P Y Y LI AL + ++ A+
Sbjct: 177 CTMTLNAVLTAYYQAKEFDALATAFQEISVSHPLVVPSVYSYNILIRALCQKHDLSAALN 236
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
V M K + PD+ ++ ++ GF ++G DA ++E M P+ + L+GL+
Sbjct: 237 VITLMEKCGVLPDNISFNTLLNGFYQNGRMDDAEAVWEMMKGWNLEPDTKSYNAKLRGLV 296
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1164
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K F + +D PD Y +I + G M EA +++ M L PD T+TE++
Sbjct: 793 ASKFFYEMHSRD-ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELM 851
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ K G DA ++ MI++ P + + L+ GL
Sbjct: 852 NGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 890
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ + Y ++ L ++G + EA+++ L D+ TYT ++ + K G A
Sbjct: 911 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 970
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I +M+ P + F +L+ G H +L
Sbjct: 971 ILTEMLGKGLQPTIVTFNVLMNGFCLHGML 1000
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ +P++Y Y +I L R K+ EA + + M + + PD+ YT ++ GF K G
Sbjct: 731 KQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDI 790
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + +M P+ L + ++ G
Sbjct: 791 RAASKFFYEMHSRDITPDVLTYTAIISGFC 820
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y L+ + G + A + + M D+ PD TYT +I GF + G +A +
Sbjct: 772 PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 831
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +M+ P+ + F L+ G
Sbjct: 832 FHEMLCRGLEPDIITFTELMNG 853
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD Y +I R G++++ ++ E M+++ L P+S TY +I + A+A
Sbjct: 700 YTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAE 759
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
+ +MI P+ + + L+ G +R+ K F E H+ D
Sbjct: 760 EAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASK-----FFYEMHSRD 804
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 41/95 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + +L+ + G + +A +V M + P+ TYT +I G K+G A
Sbjct: 841 EPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 900
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M K P + ++ GL + VK
Sbjct: 901 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVK 935
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+++ + + K+ D Y L+ L +G+ +A ++ M K + PD T+T +
Sbjct: 188 IALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTAL 247
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL---- 239
I F+K G+ +A +Y+ M++S P + + L+ GL H L KK F+ +
Sbjct: 248 IDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRL-YHAKKTFDLMASKG 306
Query: 240 -FPEKHAYD 247
FP Y+
Sbjct: 307 CFPNVVTYN 315
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA Y LI L +G+ +A ++ M K + P+ +T +I F+K+G+ +A N+Y
Sbjct: 754 DAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLY 813
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
++MI+ P L + L+ G
Sbjct: 814 KEMIRRSVHPNILTYNSLINGF 835
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY +I L + +N A++++ M K+ + D+ TY +I G G DA
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ DM+K P + F L+
Sbjct: 777 LLRDMVKRKIDPNVIFFTALI 797
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD++ + + PD Y LI ++ ++ + M+++ M + L D+ TY +I
Sbjct: 844 AKHMFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLI 902
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ + G A ++ M+ PP+ + + ILL L
Sbjct: 903 HGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCL 940
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K FD++ + + P+ Y LI ++ ++ + M++++ M +E L D+ TY +I
Sbjct: 295 AKKTFDLMASKGCF-PNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLI 353
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ + G A +I+ M+ P+ + ILL GL
Sbjct: 354 HGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGL 391
Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+++++ P+ + LI + G + EA +++ M + + P+ TY +I GF
Sbjct: 780 DMVKRK--IDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCI 837
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G DA ++++ M+ P+ + + L+ G +SK +D +LF E
Sbjct: 838 QGRLGDAKHMFDLMVSKGCFPDVVTYNTLITG-----FCKSKRVEDGMKLFCE 885
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L G++ A + ++ M + FP+ TY +I GF K D M +
Sbjct: 274 PNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKL 333
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M + + + L+ G
Sbjct: 334 FQRMYREGLVGDTFTYNTLIHG 355
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 6/131 (4%)
Query: 95 KFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIF--DIIRKQDWYQPDAYIYKDLII 150
+ ++ V R + +++ LI+ +E +L K ++IR+ P+ Y LI
Sbjct: 776 RLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRS--VHPNILTYNSLIN 833
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
G++ +A +++ M + FPD TY +I GF K D M ++ +M
Sbjct: 834 GFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVG 893
Query: 211 EELPFRILLKG 221
+ + L+ G
Sbjct: 894 DAFTYNTLIHG 904
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y LI + GK+N A +V+ M + PD TY ++ +G A+ +
Sbjct: 894 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMV 953
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
ED+ K+ + + + I+++G+
Sbjct: 954 EDLQKNQMDVDIITYNIIIQGM 975
Score = 37.4 bits (85), Expect = 6.1, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L GK+ +A+ + E ++K + D TY +I+G ++ +A +
Sbjct: 928 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCL 987
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLR------SKVKKDFEELFPEKHAYD 247
+ + + + + + ++ GL + L R +++K+D P + YD
Sbjct: 988 FRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKED--GFMPSERIYD 1039
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ D + D P Y LI A G +NEAM++ E M L PD TY +
Sbjct: 190 LALKVLDQLL-LDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 248
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
IRG K+G A + + P+ + + ILL+ L
Sbjct: 249 IRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFL 288
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L R +E I +K+ +I K+ PD Y Y LI AL + G+++ A+ + + M
Sbjct: 318 LISSLCRFGRIDEAISVLKV--MIEKE--LTPDTYSYDPLISALCKEGRLDLAIGIMDYM 373
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PD Y ++ K+G+ A+ I+ + PP + ++ L
Sbjct: 374 ISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISAL 427
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 108 DIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
DIV +L L + A++IF+ +R P+ Y +I AL G + A+ +
Sbjct: 381 DIVNYNTILAALCKNGNANQALEIFNKLRGMGC-PPNVSSYNTMISALWSCGDRSRALGM 439
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+M + + PD TY +I +DG +A+ + +DM +S P + + I+L GL
Sbjct: 440 VPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC 498
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI +L R G+++EA+ V + M +++L PD+ +Y +I K+G A+
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
I + MI + P+ + + +L L +
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKN 395
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y +I + + G + A ++ S+ + PD +Y ++R FL G + +
Sbjct: 240 PDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKL 299
Query: 200 YEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
+M P ++ + IL+ L +L+ ++K EL P+ ++YDP
Sbjct: 300 VAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEK---ELTPDTYSYDP 352
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ I D + PD Y ++ AL + G N+A++++ +R P+ +Y +
Sbjct: 365 LAIGIMDYMISNGCL-PDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTM 423
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
I G + A+ + MI P+E+ + L+ L L+ +
Sbjct: 424 ISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAI 472
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L R G + EA+ + + M + P +Y V+ G K DA+ +
Sbjct: 450 PDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGM 509
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +MI+ P E + +L++G+
Sbjct: 510 FAEMIEKGCRPNETTYILLIEGI 532
Score = 40.8 bits (94), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 46/95 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD Y +I +L K+ A++V + + ++ P TYT +I + +G
Sbjct: 164 KARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGI 223
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+AM + E+M+ P+ + +++G+ ++
Sbjct: 224 NEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMV 258
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+++ +D + P+ Y LI + ++ E M+++ M + L ++ TY +I
Sbjct: 379 AKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + G A I++ M+ PP+ + + ILL GL +
Sbjct: 438 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 478
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A ++ M + + P+ T++ +I F+K+G +A
Sbjct: 287 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 346
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y++MIK P+ + L+ G H L + K FE + FP Y+ + F
Sbjct: 347 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLIKGF 405
Query: 254 GK 255
K
Sbjct: 406 CK 407
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++D + K+ PD + Y LI +++EA ++E M +D FP+ TY +I
Sbjct: 344 AEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+GF K + M ++ +M + + + L++GL
Sbjct: 403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 440
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A + GK+ EA ++++ M K + PD TY+ +I GF +A +
Sbjct: 322 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 381
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++E MI P + + L+KG ++K ++ ELF E
Sbjct: 382 MFELMISKDCFPNVVTYNTLIKG-----FCKAKRVEEGMELFRE 420
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A KIF + D PD Y L+ L + GK+ +A+ V+E ++K + PD TY +
Sbjct: 448 MAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 506
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
I G K G D +++ + P + + ++ G R +K++ + LF E
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG-----FCRKGLKEEADALFRE 560
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D IY +I AL +N+A+ ++ M + + P+ TY +IR G +DA
Sbjct: 252 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ DMI+ P + F L+ + L + +K ++E+ K + DP
Sbjct: 312 LLSDMIERKINPNVVTFSALIDAFVKEGKL-VEAEKLYDEMI--KRSIDP 358
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY +I R G EA ++ M+++ P+S TY +IR L+DG A +
Sbjct: 532 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 591
Query: 199 IYEDM 203
+ ++M
Sbjct: 592 LIKEM 596
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K +PD Y Y +I + + GK+ + ++ S+ + + P+ YT +I
Sbjct: 484 ALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P + L++ L
Sbjct: 543 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 581
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + Y ++ L + G ++ A+ + + M K + D YT +I + DA+N
Sbjct: 217 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ +M P + + L++ L +
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCLCNY 303
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L + G + A ++++ M + + PD TY+ ++ G K G A+ ++
Sbjct: 429 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 488
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E + KS P+ + I+++G+
Sbjct: 489 EYLQKSKMEPDIYTYNIMIEGMC 511
>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 657
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+Y Y LI LA++G+M++A +++ M + TYT +I G K+ +A+
Sbjct: 466 FVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEAL 525
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
++ MI P FR L GL S+ + +EL P
Sbjct: 526 KFWDAMIDKGITPTAAAFRTLASGLCLSGKF-SRACRILDELAP 568
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ Y ++ L R GK++EA+ + S +++ + ++ YT +I GF K G + ++
Sbjct: 399 DSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELF 458
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
E+MI P+ + +L+ GL
Sbjct: 459 EEMIAKGFVPDSYCYNVLIDGL 480
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
AV +FD + +D +PD Y LI R G+ ++AM M+++ L PD TY +
Sbjct: 240 AVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTL 299
Query: 184 IRGFLKDGSPADAMNIYEDM 203
++ +G+ + ++++M
Sbjct: 300 MQCHYSEGTFPVCIGLFQEM 319
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L + +E AV F +++ +A Y LI + G ++++ +++E M
Sbjct: 406 IVNCLCRFGKLDE---AVACFRSCQEKG-IAVNAIFYTSLIDGFGKAGMVDQSKELFEEM 461
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PDS Y +I G K G DA +Y+ M + IL+ GL
Sbjct: 462 IAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLF 516
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
++ + Y P+ + LI L RTG++ +A++V+ SM + P+ TYT +I G +
Sbjct: 211 EMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCR 270
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
A ++E M ++ PP+ + + L+ G
Sbjct: 271 AEKVIQARELFEKMTQACIPPDAVAYNSLIAG 302
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 52/98 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F ++++ +PD + Y LI L +G A ++ MR +++ + TY+ +I
Sbjct: 64 ALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSII 123
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +K+ P ++ + E+M+ + P+ F +++G
Sbjct: 124 KSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGF 161
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWE--SMRKEDLFPDSQTYTEVIRGFLKDGS 192
+ Y+PD Y LI LA+ GK++E++++ +MR P+ T++ +I G + G
Sbjct: 179 ESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGE 238
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE-KHAYDPPEE 251
A+ ++ M+++ P + + L+ G L R++ ELF + A PP+
Sbjct: 239 LEKALEVFGSMLEAGCKPNKYTYTTLIAG-----LCRAEKVIQARELFEKMTQACIPPDA 293
Query: 252 I 252
+
Sbjct: 294 V 294
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R E A+++F + + +P+ Y Y LI L R K+ +A +++E M + + P
Sbjct: 233 LCRTGELEKALEVFGSMLEAGC-KPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
D+ Y +I G+ K GS +A +Y +M P + F L+ G
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFC 340
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 4/147 (2%)
Query: 79 VILGLKRFKDDEEKLQKF--IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQD 136
+I GL R + E+ L+ F + + K ++ L R E+ I A ++F+ + Q
Sbjct: 229 LIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKM-TQA 287
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSPAD 195
PDA Y LI + G M+EA +++ M L P T+ +I GF K G
Sbjct: 288 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGR 347
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A + +M + +RIL+ GL
Sbjct: 348 ANELVAEMGTKGLAADTCTYRILIAGL 374
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
D Y+ LI L+R K++EA++V++ MR++ D + + G K G+ A +
Sbjct: 362 ADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYAV 421
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E KS P FRIL + L+
Sbjct: 422 FEATRKSGAVPNPETFRILSESLI 445
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ + Y +I +L + K E+ +V E M PD + V++GF + + A +
Sbjct: 114 ANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREV 173
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y+ M++S P+ + + IL+ GL
Sbjct: 174 YQHMVESGYKPDNVSYHILIHGL 196
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DAY + ++ +LA+ G + +A++V+E+M+ E P TY +I G A++++
Sbjct: 11 DAYDF--VVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLF 68
Query: 201 EDMIKSPD-PPEELPFRILLKGLLPH 225
+ M + P+ + L+ GL
Sbjct: 69 QSMKREKRVEPDRWTYNTLISGLCSS 94
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + + ++ AR+ M +A +V++ M + PD+ +Y +I G K G +++
Sbjct: 148 NPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLK 207
Query: 199 IYEDMI--KSPDPPEELPFRILLKGLL 223
I +M + P + F L+ GL
Sbjct: 208 ILSEMAMRAAGYVPNVITFSTLIHGLC 234
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + + + PD Y LI + +++E M+++ M + L ++ TYT +I
Sbjct: 380 AKQMFEFMVSKHCF-PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + G A I+++M+ PP + + LL GL +
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 2/108 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A ++ M + + PD T++ +I F+K+G +A
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEK 347
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+Y++M+K P + + L+ G H L + K+ F E KH +
Sbjct: 348 LYDEMVKRSIDPSIVTYSSLINGFCMHDRL-DEAKQMF-EFMVSKHCF 393
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + + LI A + GK+ EA ++++ M K + P TY+ +I GF +A
Sbjct: 323 NPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQ 382
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++E M+ P+ + + L+KG
Sbjct: 383 MFEFMVSKHCFPDVVSYSTLIKGFC 407
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D P+ Y L+ L + GK+ +AM V+E +++ + P TY +I G K G
Sbjct: 459 SDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVE 518
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
D +++ ++ P+ + + ++ G R K++ + LF E
Sbjct: 519 DGWDLFCNLSLKGVKPDVVAYNTMISG-----FCRKGSKEEADALFKE 561
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ ++ + + A K++D + K+ P Y LI +++EA Q++E M
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMVKRS-IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVS 389
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ FPD +Y+ +I+GF K + M ++ +M + + + L++GL
Sbjct: 390 KHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLF 442
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 4/145 (2%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L ++ +T LA + + + +Q +P IY +I L + M++A+ +++ M +
Sbjct: 227 VVNGLCKRGDTDLAFILLNKM-EQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETK 285
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
+ P+ TY+ +I G +DA + DMI+ P+ F L+ + L +
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL-VE 344
Query: 232 VKKDFEELFPEKHAYDPPEEIFGKL 256
+K ++E+ K + DP + L
Sbjct: 345 AEKLYDEMV--KRSIDPSIVTYSSL 367
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +++ +P Y Y +I + + GK+ + ++ ++ + + PD Y +I
Sbjct: 485 AMVVFEYLQRSKM-EPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMI 543
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + GS +A ++++M + P + L++ L
Sbjct: 544 SGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L + G + A ++++ M + + P+ TY ++ G K+G AM ++
Sbjct: 430 NTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF 489
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E + +S P + I+++G+
Sbjct: 490 EYLQRSKMEPTIYTYNIMIEGMC 512
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I R G EA +++ M+++ P+S Y +IR L+DG +
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAE 592
Query: 199 IYEDM 203
+ ++M
Sbjct: 593 LIKEM 597
>gi|449442128|ref|XP_004138834.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 591
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + ++ AL + ++NEA++V+E M+KE PDS Y+ +I K G D
Sbjct: 378 KPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKE 437
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHP 226
I EDM K P+ L + L+ H
Sbjct: 438 IVEDMEKQGVTPDVLTYNTLISCACAHS 465
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+++ ++K+ PD+ Y LI L + G++ + ++ E M K+ + PD TY +I
Sbjct: 400 ALKVYEKMKKEGCV-PDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLI 458
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
A+ + M EE+ + LK HPLL+ +K
Sbjct: 459 SCACAHSQEETALTLLLKM-------EEVSCKPDLKTY--HPLLKMFCRK 499
>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Glycine max]
Length = 511
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD Y ++I L +T ++EAM ++E M+ +++ PD TY +I G K+
Sbjct: 330 QRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLE 389
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
A+ + + M + P+ + ILL G L +S +D +E+F
Sbjct: 390 RAIALCKRMKEQGIQPDVYSYTILLDG-----LCKSGRLEDAKEIF 430
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+LI+ +E + KI + + +PD + Y LI ++ A V+ SM +
Sbjct: 272 ILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQR 331
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-PHPLLRS 230
+ PD Q YT +I G K +AM+++E+M P+ + + L+ GL H L R+
Sbjct: 332 GVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERA 391
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 131 IIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
++RK + + +PD +Y +I +L + + +A V+ M + + PD TYT +I GF
Sbjct: 184 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 243
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G +A ++ +M P F IL+ L
Sbjct: 244 IMGHLKEAFSLLNEMKLKNINPNVCTFNILIDAL 277
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+Q D Y LI L +TG+ ++ + + PD Y +I K+ DA
Sbjct: 158 FQLDQVSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDAC 217
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++Y +MI P+ + + L+ G
Sbjct: 218 DVYSEMIVKGISPDVVTYTTLIHGFC 243
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 45/89 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QPD Y Y L+ L ++G++ +A ++++ + + + YT +I K G
Sbjct: 399 KEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFF 458
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A+++ M P+ + F I+++ L
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRAL 487
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++ ++ PD Y LI L + + A+ + + M+++ + PD +YT ++
Sbjct: 356 AMSLFEEMKHKNMI-PDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILL 414
Query: 185 RGFLKDGSPADAMNIYEDMI 204
G K G DA I++ ++
Sbjct: 415 DGLCKSGRLEDAKEIFQRLL 434
>gi|242051246|ref|XP_002463367.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
gi|241926744|gb|EER99888.1| hypothetical protein SORBIDRAFT_02g042500 [Sorghum bicolor]
Length = 543
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y L+ GK++ A++++E M+ P+ YT +I G K+G +A +
Sbjct: 445 PDVYTYASLVHGHCVNGKVDVALKLFEEMKHRGTEPNVVAYTALISGLAKEGRSEEAFQL 504
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y+DM+K+ P++ + L+ L
Sbjct: 505 YDDMLKAGLTPDDSLYSALVGSL 527
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y L L R +M EA + M ++ + P+ TYT +I K+G +A ++
Sbjct: 341 DVYTYNTLACGLCRVNRMAEAKTLLHIMIEKGVPPNYVTYTTLISIHCKEGDMVEARRLF 400
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE--LFPEKHAY 246
+M P + + +++ G + +R + +K+ E+ L P+ + Y
Sbjct: 401 REMAGKGAMPSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTY 450
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y+Y +I A R G + A +V++ + P+ +TY +I GF K G A +
Sbjct: 236 DVYLYTAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGVLINGFCKIGQMEAAEMLL 295
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEELFPEKHAY 246
DM ++ F ++ G ++ + KVK E++ E Y
Sbjct: 296 ADMQGRGVGHNQIIFNTMIDGYCRQGMVDNALKVKAAMEKMGIELDVY 343
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y ++ + G + EA + + M K+ L PD TY ++ G +G A+ +
Sbjct: 410 PSVVTYNVMMDGYIKKGSIREAERFRKEMEKKGLVPDVYTYASLVHGHCVNGKVDVALKL 469
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P + + L+ GL
Sbjct: 470 FEEMKHRGTEPNVVAYTALISGL 492
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/136 (19%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 88 DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
DD L + H +RL + ++L R+++ ++ +I+ + + Y
Sbjct: 149 DDARALLDEMPRHGVRLNALCYNSLLDCYVRRKDDARVQELLEIM-ENGGIEATVGTYTI 207
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ +L+ G +++ V + M+ +++ D YT VI + + G+ A ++++ + +
Sbjct: 208 LVDSLSTAGDISKVEAVVDEMKAKNVAGDVYLYTAVINAYCRAGNVRRASEVFDECVGNG 267
Query: 208 DPPEELPFRILLKGLL 223
P E + +L+ G
Sbjct: 268 IEPNERTYGVLINGFC 283
>gi|255544732|ref|XP_002513427.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547335|gb|EEF48830.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 567
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ ++PD L+ L ++ KM +A++V E M + PD+ +YT ++ K G+
Sbjct: 90 KNGHKPDVVQATQLLYDLCKSNKMKKAIRVMEMMISCGIIPDAASYTFLVNHLCKRGNVG 149
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
AM + E M S P + + L+KGL H L ++
Sbjct: 150 YAMQLVEKMEDSGYPANTVTYNTLVKGLCMHGNLNKSLQ 188
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+Y Y LI L G + EAM++++ + ++ PD + +I GF K ++
Sbjct: 442 FTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLEEDHYRPDIDNFNALILGFCKSHRTDLSL 501
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++E MI+ P E + IL++G++
Sbjct: 502 EVFEMMIEKGYTPSETTYTILVEGII 527
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y L+ L G +N+++Q + + ++ L P++ TY+ ++ K+ +AM
Sbjct: 163 YPANTVTYNTLVKGLCMHGNLNKSLQFLDRLMQKGLVPNAFTYSSLLEAAYKERGVNEAM 222
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ +++I P + + +LL GL
Sbjct: 223 RLLDEIIAKGGQPNLVSYNVLLTGLC 248
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
YK ++ L + G A + M K PDS TY+ +IRG +G +AM I++ +
Sbjct: 414 YKGVVSCLCKKGNTYPAFLLLYEMTKYGFTPDSYTYSSLIRGLCIEGMLYEAMEIFKLLE 473
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
+ P+ F L+ G R+ + + E+ EK Y P E +
Sbjct: 474 EDHYRPDIDNFNALILGFCKSH--RTDLSLEVFEMMIEK-GYTPSETTY 519
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+A+ Y L+ A + +NEAM++ + + + P+ +Y ++ G K+G
Sbjct: 195 QKGLVPNAFTYSSLLEAAYKERGVNEAMRLLDEIIAKGGQPNLVSYNVLLTGLCKEGRIE 254
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ +++++ P + + ILL+ L
Sbjct: 255 EAIRLFKNLPSKGFSPNVVSYNILLRSLC 283
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y LI +LA GK+ +A+QV + M P + +Y +I K+G +N
Sbjct: 304 SPSIVTYNILIGSLAFHGKIEQALQVIDEMMMGPFKPTATSYNPIIARLCKEGKVEAVVN 363
Query: 199 IYEDMIKSPDPPEELPFRIL 218
+ MI P E F +
Sbjct: 364 CLDQMIFGRCSPNEGTFNAI 383
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF ++ ++D Y+PD + LI+ ++ + + +++V+E M ++ P TYT ++
Sbjct: 465 AMEIFKLL-EEDHYRPDIDNFNALILGFCKSHRTDLSLEVFEMMIEKGYTPSETTYTILV 523
Query: 185 RGFLKD 190
G + +
Sbjct: 524 EGIIHE 529
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I+ L + GK EA +V M + + PD+ YT +I GF K G A
Sbjct: 325 KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK 384
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+++M+ P+ + + L++G
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGF 408
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + GK+ E ++ M L PD TYT +I + K G +A +
Sbjct: 395 SPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFS 454
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ +M++ P + + L+ GL H
Sbjct: 455 LHNEMVQMGMTPNIVTYGALIDGLCKH 481
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + E A ++ D +RK+ Q + IY ++ + + G + +A+++ + M
Sbjct: 473 ALIDGLCKHGELDTANELLDEMRKKG-LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD+ TYT VI + + G A + ++M+ P + F +L+ G
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFC 584
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y L+ MN ++++ MR + + PDS TY +I+G K + +A +
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665
Query: 200 YEDMIKSPDPPEELPFRILLK 220
Y++MI+ P + L+K
Sbjct: 666 YKEMIEKGYVPTVTSYNALIK 686
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI + G + A + ++ M + + PD TYT +I+GF + G + N+
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNL 420
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ +MI P+E+ + L+
Sbjct: 421 FHEMISRGLKPDEVTYTTLI 440
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I G++ +A+++ + M+ + L P+ TY +I K G +A +
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV 350
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+M+ P+ + + L+ G +R+ K F+E+ +K
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRT-ANKWFDEMLSKK 393
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +L R GK+ EA ++ M PD +Y+ VI G+ G A+ + +DM
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
P + ++ LL K+ K FE
Sbjct: 321 IKGLKPNRYTYNSII-------LLLCKIGKSFE 346
>gi|449441228|ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 116 LERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L R+ + AV + D++ K Y PD Y L+ +L R K+ EA ++ M+ +
Sbjct: 257 LCRKNQVNGAVDLLEDMLNKG--YIPDTLSYATLLNSLCRKKKLREAYKLLCRMKVKGCN 314
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD Y VI GF ++G DA I EDM + P + + L GL
Sbjct: 315 PDIAHYNTVIMGFCREGRALDACKILEDMQSNGCLPNLVSYESLTNGLC 363
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI A G ++ A ++ M + ++ PD +TY +++G + A+++
Sbjct: 210 PNTKSYNILIRAFCWNGNISIAYTLFNKMFERNVIPDVETYRTLMQGLCRKNQVNGAVDL 269
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
EDM+ P+ L + LL L LR K
Sbjct: 270 LEDMLNKGYIPDTLSYATLLNSLCRKKKLREAYK 303
>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
Length = 526
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV+ L++ R+ V + + K D IY + + G MNEA+++ M
Sbjct: 72 IVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEM 131
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ L PD YT +I G+ G +A ++E+M+K+ P+ + + IL G L+
Sbjct: 132 KCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLV 191
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + + EA ++++ M ++ L PD+ YT +I G+ G + A +
Sbjct: 433 EPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAED 492
Query: 199 IYEDMIKSPDPPEELPFRIL 218
+ ++MI P+EL F +L
Sbjct: 493 LLQEMIDKGIEPDELTFSVL 512
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + + K PD Y LI G+M A QV+E M K ++ PD TY +
Sbjct: 124 AVKLLNEM-KCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILA 182
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K G + ++ + M P L + I + G
Sbjct: 183 SGFCKSGLVMEVFDLLDRMADHGLEPNSLTYGIAIVGFC 221
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + G M++A + M + L D YT ++ G+ K G +A +
Sbjct: 313 PDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQL 372
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ M P+ + + +LL G L L
Sbjct: 373 FVQMTNLGIKPDVIAYTVLLDGHLKETL 400
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD++ + +PD Y LI + + ++++ M+++ + + L P++ TY ++
Sbjct: 369 ANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
GF + G A ++++M+ PP + + ILL GL + L +K + FE++
Sbjct: 428 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL-NKALEIFEKM 481
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI L GK ++ ++ M ++ PD T++ +I F+K+G +A
Sbjct: 277 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 336
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+Y +MI P+ + + L+ G L
Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCL 366
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI + GK+ EA +++ M + PD+ TY +I GF K+ +A +
Sbjct: 313 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 372
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M+ P+ + + IL+ + ++K D LF E
Sbjct: 373 FDLMVSKGCEPDIVTYSILI-----NSYCKAKRVDDGMRLFRE 410
Score = 43.9 bits (102), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
IY +I + K+++A ++ S+ + + PD TY +I G K GS ++A ++ M
Sbjct: 492 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 551
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ P++ + IL++ L L S V+
Sbjct: 552 KEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + ++EA Q+++ M + PD TY+ +I + K D M +
Sbjct: 348 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 407
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ ++ P + + L+ G L + +ELF E + P +
Sbjct: 408 FREISSKGLIPNTITYNTLVLGFCQSGKLNAA-----KELFQEMVSRGVPPSV 455
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYI--YKDLIIALARTGKMNEAMQVWESMR 169
VL L + + LA+ +F RK + A + Y +I +L + G ++A+ ++ M
Sbjct: 216 VLNRLCKSGNSALALDLF---RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 272
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + D TY+ +I G DG D + +MI P+ + F L+
Sbjct: 273 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 322
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD Y ++ L ++G A+ ++ M + ++ Y+ VI KDGS DA+
Sbjct: 206 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 265
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++ +M + + + L+ GL
Sbjct: 266 SLFNEMEMKGIKADVVTYSSLIGGLC 291
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L G++N+A++++E M+K + Y +I G DA ++
Sbjct: 453 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 512
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + P+ + + +++ GL
Sbjct: 513 FCSLSDKGVKPDVVTYNVMIGGLC 536
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I L + G ++EA ++ M+++ PD TY +IR L ++
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 581
Query: 199 IYEDM 203
+ E+M
Sbjct: 582 LIEEM 586
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + L+ G+++EA+ + + M + PD T + +I G G ++A+
Sbjct: 136 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 195
Query: 198 NIYEDMIKSPDPPEELPF 215
+ + M++ P+E+ +
Sbjct: 196 VLIDRMVEYGFQPDEVTY 213
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD++ + +PD Y LI + + ++++ M+++ + + L P++ TY ++
Sbjct: 398 ANQMFDLMVSKGC-EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
GF + G A ++++M+ PP + + ILL GL + L +K + FE++
Sbjct: 457 LGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL-NKALEIFEKM 510
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 42/90 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI L GK ++ ++ M ++ PD T++ +I F+K+G +A
Sbjct: 306 KADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKE 365
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+Y +MI P+ + + L+ G L
Sbjct: 366 LYNEMITRGIAPDTITYNSLIDGFCKENCL 395
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI + GK+ EA +++ M + PD+ TY +I GF K+ +A +
Sbjct: 342 PDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQM 401
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++ M+ P+ + + IL+ + ++K D LF E
Sbjct: 402 FDLMVSKGCEPDIVTYSILI-----NSYCKAKRVDDGMRLFRE 439
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
IY +I + K+++A ++ S+ + + PD TY +I G K GS ++A ++ M
Sbjct: 521 IYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKM 580
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ P++ + IL++ L L S V+
Sbjct: 581 KEDGCTPDDFTYNILIRAHLGGSGLISSVE 610
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 5/113 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + ++EA Q+++ M + PD TY+ +I + K D M +
Sbjct: 377 PDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRL 436
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ ++ P + + L+ G L + +ELF E + P +
Sbjct: 437 FREISSKGLIPNTITYNTLVLGFCQSGKLNAA-----KELFQEMVSRGVPPSV 484
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYI--YKDLIIALARTGKMNEAMQVWESMR 169
VL L + + LA+ +F RK + A + Y +I +L + G ++A+ ++ M
Sbjct: 245 VLNRLCKSGNSALALDLF---RKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEME 301
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ + D TY+ +I G DG D + +MI P+ + F L+
Sbjct: 302 MKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 351
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 42/86 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD Y ++ L ++G A+ ++ M + ++ Y+ VI KDGS DA+
Sbjct: 235 FQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDAL 294
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++ +M + + + L+ GL
Sbjct: 295 SLFNEMEMKGIKADVVTYSSLIGGLC 320
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L G++N+A++++E M+K + Y +I G DA ++
Sbjct: 482 PSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSL 541
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + P+ + + +++ GL
Sbjct: 542 FCSLSDKGVKPDVVTYNVMIGGLC 565
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I L + G ++EA ++ M+++ PD TY +IR L ++
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVE 610
Query: 199 IYEDM 203
+ E+M
Sbjct: 611 LIEEM 615
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 40/78 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + L+ G+++EA+ + + M + PD T + +I G G ++A+
Sbjct: 165 YEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEAL 224
Query: 198 NIYEDMIKSPDPPEELPF 215
+ + M++ P+E+ +
Sbjct: 225 VLIDRMVEYGFQPDEVTY 242
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ K+ PD Y Y LI AL R GK++ A++ + M PD +Y ++ K+G
Sbjct: 346 VMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNG 405
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +A+NI+E + + PP + L L
Sbjct: 406 NADEALNIFEKLGEVGCPPNAGSYNTLFGAL 436
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI AL R GK++EA V + M+++ L PD +Y +I ++G A+
Sbjct: 318 EPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIE 377
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+DMI P+ L + +L L +
Sbjct: 378 FLDDMISGGHLPDILSYNSILASLCKN 404
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AV+ + + A K+ D ++K+ ++PD Y LI G+++ A++V + + K
Sbjct: 151 AVISGFCKADRVDHASKVLDRMKKR-GFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLK 209
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ P TYT +I + G +AM + ++M+ P+ + +++ G+ +L
Sbjct: 210 DNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGML 267
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ +I+ K +PD + Y +I + +++ A +V + M+K PD TY +I
Sbjct: 131 AIQVMEILEKHG--KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI 188
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF---- 240
F G A+ + + ++K P + + IL++ + + +K +E+
Sbjct: 189 GNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKL-LDEMLSRGL 247
Query: 241 -PEKHAYD 247
P+++ Y+
Sbjct: 248 RPDRYTYN 255
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R+ + LA++ D + + PD Y ++ +L + G +EA+ ++E + + P
Sbjct: 366 LCREGKVDLAIEFLDDM-ISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPP 424
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++ +Y + G A+ + +M+ + P+E+ + L+ L L+ ++
Sbjct: 425 NAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIE 482
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L R G +++A+++ M E P +Y V+ G K DA+
Sbjct: 459 PDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIE 518
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M+ P E + +L++G+
Sbjct: 519 VLAAMVNEGCLPNETTYTLLIQGI 542
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 6/115 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y ++ + + G ++ A + + K TY ++R L +G
Sbjct: 248 RPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEK 307
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRS-----KVKKDFEELFPEKHAYDP 248
+ DM+ P + + L+ L + KV K+ + L P+ ++YDP
Sbjct: 308 LMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKE-KALAPDGYSYDP 361
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+A Y +I A + GK+ EA ++W +M+ + PDS TYT +I G + +AM
Sbjct: 482 QPNAITYNVMIYAYCKQGKVKEARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMR 541
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ +M + + +++ GL
Sbjct: 542 LFSEMGLKGLDQNSVTYTVMISGL 565
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 101 VLRLLKMDIV-------AVLIELERQEETILAV-KIFDIIRKQDWYQPDAYIYKDLIIAL 152
+L+++K D V +LIEL + + V K+FD +R++ + D ++Y LI
Sbjct: 262 ILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERG-IESDIHVYTSLISWN 320
Query: 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
R G + A +++ + ++ L P S TY +I G K G A + +M +
Sbjct: 321 CRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQ 380
Query: 213 LPFRILLKGLLPHPLL 228
+ F L+ G ++
Sbjct: 381 VVFNTLINGYCRKGMI 396
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD+Y Y LI ++EAM+++ M + L +S TYT +I G K G
Sbjct: 512 KANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMISGLSKAGKS 571
Query: 194 ADAMNIYEDM 203
+A +Y+++
Sbjct: 572 DEAFGLYDEI 581
>gi|303289811|ref|XP_003064193.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454509|gb|EEH51815.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 401
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 118 RQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
R E LA K D R + +P Y Y L+ ALAR+G+M+EA + MR + + P
Sbjct: 80 RCGEIALAEKALDAGRADARAGNKPTVYAYTALVQALARSGRMDEARGWLDVMRADGVAP 139
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK----GLLPHPLLRS 230
++ TY+ ++ G ++ G A A + +M + P + + LLK G+ P LR
Sbjct: 140 NAHTYSTIVDGLVRAGDAAAAESALREMKANGVEPTAVTYNTLLKSCVAGVTPADALRG 198
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA Y LI AL + G++ EA MR PD +TY ++ GF + G A
Sbjct: 333 APDASAYNCLIDALVKAGEVAEAASCVRRMRGRGCAPDRRTYGALLDGFCRVGDVRSAAG 392
Query: 199 IYEDMI 204
+Y+ ++
Sbjct: 393 LYDALM 398
>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
Length = 654
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+Y Y LI LA++G+M++A +++ M + TYT +I G K+ +A+
Sbjct: 463 FVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEAL 522
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
++ MI P FR L GL S+ + +EL P
Sbjct: 523 KFWDAMIDKGITPTAAAFRTLASGLCLSGKF-SRACRILDELAP 565
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ Y ++ L R GK++EA+ + S +++ + ++ YT +I GF K G + ++
Sbjct: 396 DSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELF 455
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
E+MI P+ + +L+ GL
Sbjct: 456 EEMIAKGFVPDSYCYNVLIDGL 477
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
AV +FD + +D +PD Y LI R G+ ++AM M+++ L PD TY +
Sbjct: 237 AVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTL 296
Query: 184 IRGFLKDGSPADAMNIYEDM 203
++ +G+ + ++++M
Sbjct: 297 MQCHYSEGTFPVCIGLFQEM 316
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L + +E AV F +++ +A Y LI + G ++++ +++E M
Sbjct: 403 IVNCLCRFGKLDE---AVACFRSCQEKG-IAVNAIFYTSLIDGFGKAGMVDQSKELFEEM 458
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PDS Y +I G K G DA +Y+ M + IL+ GL
Sbjct: 459 IAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLF 513
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y +I+ L + GK EA +V M + + PD+ YT +I GF K G A
Sbjct: 325 KPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANK 384
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+++M+ P+ + + L++G
Sbjct: 385 WFDEMLSKKISPDYITYTTLIQGF 408
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + GK+ E ++ M L PD TYT +I + K G +A +
Sbjct: 395 SPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFS 454
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ +M++ P + + L+ GL H
Sbjct: 455 LHNEMVQMGMTPNIVTYGALIDGLCKH 481
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ L + E A ++ D +RK+ Q + IY ++ + + G + +A+++ + M
Sbjct: 473 ALIDGLCKHGELDTANELLDEMRKKG-LQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEV 531
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD+ TYT VI + + G A + ++M+ P + F +L+ G
Sbjct: 532 AGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFC 584
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y L+ MN ++++ MR + + PDS TY +I+G K + +A +
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665
Query: 200 YEDMIKSPDPPEELPFRILLK 220
Y++MI+ P + L+K
Sbjct: 666 YKEMIEKGYVPTVTSYNALIK 686
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI + G + A + ++ M + + PD TYT +I+GF + G + N+
Sbjct: 361 PDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNL 420
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ +MI P+E+ + L+
Sbjct: 421 FHEMISRGLKPDEVTYTTLI 440
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I G++ +A+++ + M+ + L P+ TY +I K G +A +
Sbjct: 291 PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKV 350
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+M+ P+ + + L+ G +R+ K F+E+ +K
Sbjct: 351 LREMMSQKIIPDNVVYTTLIHGFFKLGHVRT-ANKWFDEMLSKK 393
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +L R GK+ EA ++ M PD +Y+ VI G+ G A+ + +DM
Sbjct: 261 YNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQ 320
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
P + ++ LL K+ K FE
Sbjct: 321 IKGLKPNRYTYNSII-------LLLCKIGKSFE 346
>gi|414878622|tpg|DAA55753.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
Length = 573
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + + EA +++ M + L PD TYT +I G+ G A A +
Sbjct: 483 EPDVTCYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAED 542
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++++MI P+ L F +L K L H
Sbjct: 543 LFQEMIAKGMKPDVLSFSVLHKRTLRH 569
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y + A + G MNEA+++ M L PD YT +I G+ G +A ++
Sbjct: 155 DGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETENAWQVF 214
Query: 201 EDMIKSPDPPEELPFRILLKG 221
E+M+K+ P+ + + IL G
Sbjct: 215 EEMLKANIKPDVVTYNILASG 235
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 7/119 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI G+ A QV+E M K ++ PD TY + G+ ++G +I
Sbjct: 189 PDKIHYTCLINGYCLKGETENAWQVFEEMLKANIKPDVVTYNILASGYSRNGLVMKVFDI 248
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEEIFGKL 256
E M+ P L + I + G R + E LF E+ D ++G +
Sbjct: 249 LEHMMDQGLEPNSLTYGIAIAG-----FCRGGNLSEAEVLFNIVEERGIDNINVLYGSM 302
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A +T M+ A ++W E D YT ++ G+ K G +A +
Sbjct: 364 PDVISYSKLISAYCQTRDMHNA-RLWFHDMVERGLSDVIVYTVLMNGYCKVGRLQEACEL 422
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ MI P+ + + +LL G L L
Sbjct: 423 FVQMINLGIKPDVVAYTVLLDGHLKETL 450
Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
ET A ++F+ + K + +PD Y L +R G + + + E M + L P+S TY
Sbjct: 206 ETENAWQVFEEMLKAN-IKPDVVTYNILASGYSRNGLVMKVFDILEHMMDQGLEPNSLTY 264
Query: 181 TEVIRGFLKDGSPADA---MNIYED 202
I GF + G+ ++A NI E+
Sbjct: 265 GIAIAGFCRGGNLSEAEVLFNIVEE 289
>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
Length = 544
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+ ++L L ++ A +FD + + PD +Y L+ A R+G+++EA +V+ M
Sbjct: 219 LASLLGALSKKRLASEAQAMFDSYK--SVFTPDVVLYTTLVHAWCRSGRLDEAERVFAEM 276
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ + P+ TYT VI + G A + MI S PP F +++
Sbjct: 277 QQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 329
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 112 VLIE-LERQEETILA-VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
VLI+ L R + T+ A +KIF + K+ PD+Y Y LI L R G+++EA +++ M
Sbjct: 161 VLIKALCRNDGTVDAGLKIFLEMPKRGC-DPDSYTYGTLISGLCRFGRIDEAKKLFTEMV 219
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++D P TYT +I G + +AM E+M P + L+ GL
Sbjct: 220 EKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLC 273
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ L R +E A K+F + ++D P Y LI L + ++EAM+ E M
Sbjct: 198 LISGLCRFGRIDE---AKKLFTEMVEKDC-APTVVTYTSLINGLCGSKNVDEAMRYLEEM 253
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + + P+ TY+ ++ G KDG AM ++E M+ P + + L+ GL +
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 229 RSKV----KKDFEELFPEKHAY 246
+ V + + + L P+ Y
Sbjct: 314 QEAVELLDRMNLQGLKPDAGLY 335
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + ++ A+++F+++ + +P+ Y LI L + K+ EA+++ + M + L P
Sbjct: 272 LCKDGRSLQAMELFEMMMARGC-RPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKP 330
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
D+ Y +VI GF +A N ++MI P L + I +K
Sbjct: 331 DAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVK 375
Score = 43.5 bits (101), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +P+ + Y L+ L + G+ +AM+++E M P+ TYT +I G K+
Sbjct: 254 KSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKI 313
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+A+ EL R+ L+GL P L KV F + + A + +E+
Sbjct: 314 QEAV--------------ELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEM 358
>gi|449505568|ref|XP_004162510.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Cucumis sativus]
Length = 614
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + ++ AL + ++NEA++V+E M+KE PDS Y+ +I K G D
Sbjct: 401 KPNVITFTIIMHALGKAKQINEALKVYEKMKKEGCVPDSSFYSSLIFILGKAGRLTDVKE 460
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
I EDM K P+ L + L+ H
Sbjct: 461 IVEDMEKQGVTPDVLTYNTLISCACAH 487
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 10/110 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+++ ++K+ PD+ Y LI L + G++ + ++ E M K+ + PD TY +I
Sbjct: 423 ALKVYEKMKKEGCV-PDSSFYSSLIFILGKAGRLTDVKEIVEDMEKQGVTPDVLTYNTLI 481
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234
A+ + M EE+ + LK HPLL+ +K
Sbjct: 482 SCACAHSQEETALTLLLKM-------EEVSCKPDLKTY--HPLLKMFCRK 522
>gi|17047023|gb|AAL34928.1|AC079037_1 Putative PPR-repeat protein [Oryza sativa]
gi|31429883|gb|AAP51872.1| hypothetical protein LOC_Os10g02650 [Oryza sativa Japonica Group]
Length = 949
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 52/98 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F ++ + Q DAY Y +I L G+++ +Q++ M + PD+ TY +I
Sbjct: 206 ALDVFRRMKGDEHVQLDAYAYTTMIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMI 265
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
R + K AM+IY+ MI++ P+ + IL+ L
Sbjct: 266 RWYCKSKWVGAAMDIYKVMIRTGVAPDLRCYTILMASL 303
Score = 45.8 bits (107), Expect = 0.015, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLI----ELERQEETILAVKIFDIIRKQDWY 138
++R K+ E L++ I+ L +I+ + L RQ + +IFD + K+
Sbjct: 516 MRRLKEAEATLRQMIREG---LAPDEIIYTSLINGYSLTRQTRNV--CRIFDEMLKRG-L 569
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP + Y LI L + K+ +A+ E M +E + P + YT +I F + G ++
Sbjct: 570 QPGPHAYGSLINGLVKGNKIRKALGYLERMLEEGIAPQTVIYTMLINQFFRKGDVRLGLD 629
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M+K+ P+ + + L+ G+
Sbjct: 630 LVVLMMKTNVAPDLITYGALVTGI 653
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D +P +Y +I+ L R ++ EA M +E L PD YT +I G+
Sbjct: 496 KDGIEPSIAVYDSIIVCLCRMRRLKEAEATLRQMIREGLAPDEIIYTSLINGYSLTRQTR 555
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ I+++M+K P + L+ GL+
Sbjct: 556 NVCRIFDEMLKRGLQPGPHAYGSLINGLV 584
Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPDA Y +I ++ + AM +++ M + + PD + YT ++ KDG +A N
Sbjct: 255 QPDAATYNVMIRWYCKSKWVGAAMDIYKVMIRTGVAPDLRCYTILMASLCKDGKLGEAEN 314
Query: 199 IYEDMIKSPDPPEELPF 215
+++ M++S P+ + F
Sbjct: 315 LFDKMLESGLFPDHVMF 331
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 12/122 (9%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +IY +I L R KM++A + M + + P+ TYT ++ ++ G A+ +
Sbjct: 720 PDLHIYNGMINGLCRANKMDDAYSLLSVMDQTGILPNHVTYTILMNNQIRLGDINHAIQL 779
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF--------PEKHAYDPPEE 251
+ + +++ + +KGL L ++K+ L P K +YD E
Sbjct: 780 FNSLNSDGCVFDKITYNTFIKGL----SLAGRMKEALSFLLMMHKRGFVPSKASYDKLME 835
Query: 252 IF 253
+
Sbjct: 836 LL 837
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+++ +D + P+ Y LI + ++ E M+++ M + L ++ TY +I
Sbjct: 363 AKHMFELMISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLI 421
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G + G A I++ M+ PP+ + + ILL GL +
Sbjct: 422 QGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKY 462
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A ++ M + + P+ T++ +I F+K+G +A
Sbjct: 271 RPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 330
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y++MIK P+ + L+ G H L + K FE + FP Y+ + F
Sbjct: 331 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYNTLIKGF 389
Query: 254 GK 255
K
Sbjct: 390 CK 391
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++D + K+ PD + Y LI +++EA ++E M +D FP+ TY +I
Sbjct: 328 AEKLYDEMIKRSI-DPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 386
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+GF K + M ++ +M + + + L++GL
Sbjct: 387 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGL 424
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A + GK+ EA ++++ M K + PD TY+ +I GF +A +
Sbjct: 306 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 365
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++E MI P + + L+KG ++K ++ ELF E
Sbjct: 366 MFELMISKDCFPNVVTYNTLIKG-----FCKAKRVEEGMELFRE 404
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A KIF + D PD Y L+ L + GK+ +A+ V+E ++K + PD TY +
Sbjct: 432 MAQKIFKKM-VSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIM 490
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
I G K G D +++ + P + + ++ G R +K++ + LF E
Sbjct: 491 IEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISG-----FCRKGLKEEADALFRE 544
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D IY +I AL +N+A+ ++ M + + P+ TY +IR G +DA
Sbjct: 236 EADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASR 295
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ DMI+ P + F L+ + L + +K ++E+ K + DP
Sbjct: 296 LLSDMIERKINPNVVTFSALIDAFVKEGKL-VEAEKLYDEMI--KRSIDP 342
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY +I R G EA ++ M+++ P+S TY +IR L+DG A +
Sbjct: 516 KPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAE 575
Query: 199 IYEDM 203
+ ++M
Sbjct: 576 LIKEM 580
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K +PD Y Y +I + + GK+ + ++ S+ + + P+ YT +I
Sbjct: 468 ALVVFEYLQKSKM-EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 526
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + G +A ++ +M + P + L++ L
Sbjct: 527 SGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARL 565
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + Y ++ L + G ++ A+ + + M K + D YT +I + DA+N
Sbjct: 201 QPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 260
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
++ +M P + + L++ L +
Sbjct: 261 LFTEMDNKGIRPNVVTYNSLIRCLCNY 287
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 43/83 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L + G + A ++++ M + + PD TY+ ++ G K G A+ ++
Sbjct: 413 NTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF 472
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E + KS P+ + I+++G+
Sbjct: 473 EYLQKSKMEPDIYTYNIMIEGMC 495
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
LER EE +F ++ ++P++ IY LI A++G+M EA +++ M + P
Sbjct: 311 LERAEE------LFRVMAASG-FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRP 363
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
D T+T +I G K G+ A +E+M++ P + + +++GL
Sbjct: 364 DVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 40/172 (23%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
R L +V L++ +R +E A ++F + K + PDA Y +I LA+ G EA+
Sbjct: 225 RALHTAMVRTLLKAKRVKE---AREVFGQMEKCG-FPPDAIAYNTMIDGLAKAGHAQEAL 280
Query: 163 QVWESM--------------------------RKEDLF---------PDSQTYTEVIRGF 187
+V ++M R E+LF P+S YT +I GF
Sbjct: 281 KVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF 340
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G +A +++++M+++ P+ + +++ GL + K FEE+
Sbjct: 341 AKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFE-QAAKSFEEM 391
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + +I L ++G +A + +E M + P+ TYT +I+G K G A+A
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAF 420
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
I + MI P+ + + LL G
Sbjct: 421 RIMKGMIAHGCFPDSVTYICLLDGF 445
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + PD ++ ++ L + ++ EA +V+ M K PD+ Y +I
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
G K G +A+ + ++M+ P E+ + G+L + L ++ + EELF
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTY-----GILVNSLCKAGTLERAEELF 318
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L++ G++ A ++ + M FPDS TY ++ GF K G +A
Sbjct: 397 KPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQ 456
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ +++ K P + L+KGL + + + FE+ DP
Sbjct: 457 LLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDP 506
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 109 IVAVLIELERQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I+ LI+ ++ E+ A K FD +I K +P Y L+ AL G ++EA +E
Sbjct: 654 IINGLIKGKKLED---ACKFFDEMIGKGQ--KPTVATYTALVQALCHAGNVDEAFHRFEG 708
Query: 168 M-RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
M + +L Y +I GF K A+ ++EDMI + P + L G
Sbjct: 709 MLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDG----- 763
Query: 227 LLRSKVKKDFEELFPEKHAYDPP 249
L+RS + +EL E A P
Sbjct: 764 LVRSGKTEKAQELLQEMAAGGSP 786
Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + + W D Y L L G+++ A+ +++ M ++ PD+ Y +I
Sbjct: 597 AVKMLEEASSRGW-NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCII 655
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G +K DA +++MI P + L++ L
Sbjct: 656 NGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + LI + ART + ++A+ +E M+++ PD T+ ++ K G A +
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEEI 252
+ +M+ P P R L ++ LL++K K+ E+F EK + PP+ I
Sbjct: 212 FHEMMAMGFVP---PDRALHTAMV-RTLLKAKRVKEAREVFGQMEKCGF-PPDAI 261
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
++L + AVL L+ T A+ F +Q +Q D + Y L+ L ++
Sbjct: 83 QVLGSHVAAVLRSLK---VTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCY 139
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ E M K + P++ ++ +IR F + DA+ +E M + P+ F IL+
Sbjct: 140 AIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDC- 198
Query: 223 LPHPLLRSKVKKDFEELFPEKHA--YDPPE 250
L ++ + + E+F E A + PP+
Sbjct: 199 ----LCKAGMDEKAFEVFHEMMAMGFVPPD 224
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 7/107 (6%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
LER EE +F ++ ++P++ IY LI A++G+M EA +++ M + P
Sbjct: 311 LERAEE------LFRVMAASG-FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRP 363
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
D T+T +I G K G+ A +E+M++ P + + +++GL
Sbjct: 364 DVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGL 410
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 40/172 (23%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
R L +V L++ +R +E A ++F + K + PDA Y +I LA+ G EA+
Sbjct: 225 RALHTAMVRTLLKAKRVKE---AREVFGQMEKCG-FPPDAIAYNTMIDGLAKAGHAQEAL 280
Query: 163 QVWESM--------------------------RKEDLF---------PDSQTYTEVIRGF 187
+V ++M R E+LF P+S YT +I GF
Sbjct: 281 KVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF 340
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G +A +++++M+++ P+ + +++ GL + K FEE+
Sbjct: 341 AKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFE-QAAKSFEEM 391
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 43/85 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + +I L ++G +A + +E M + P+ TYT +I+G K G A+A
Sbjct: 361 YRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAF 420
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
I + MI P+ + + LL G
Sbjct: 421 RIMKGMIAHGCFPDSVTYICLLDGF 445
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + PD ++ ++ L + ++ EA +V+ M K PD+ Y +I
Sbjct: 208 AFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMI 267
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
G K G +A+ + ++M+ P E+ + G+L + L ++ + EELF
Sbjct: 268 DGLAKAGHAQEALKVLDNMLAKACVPTEVTY-----GILVNSLCKAGTLERAEELF 318
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y +I L++ G++ A ++ + M FPDS TY ++ GF K G +A
Sbjct: 397 KPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQ 456
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
+ +++ K P + L+ GL V+K ++LF + A
Sbjct: 457 LLDELDKCSSSPNLQLYSSLVNGLCDG----GSVEKTLDDLFEQSKA 499
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 12/143 (8%)
Query: 109 IVAVLIELERQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I+ LI++++ E+ A K FD +I K +P Y L+ AL G ++EA +ES
Sbjct: 654 IINGLIKVKKLED---ACKFFDEMIGKGQ--KPTVATYTALVQALCHAGNVDEAFHRFES 708
Query: 168 M-RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
M + +L Y +I GF K A+ ++EDMI + P + L G
Sbjct: 709 MLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDG----- 763
Query: 227 LLRSKVKKDFEELFPEKHAYDPP 249
L+RS + +EL E A P
Sbjct: 764 LVRSGKTEKAQELLQEMAAGGSP 786
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + + W D Y L L G+++ A+ +++ M ++ PD+ Y +I
Sbjct: 597 AVKMLEEASSRGW-NADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCII 655
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G +K DA +++MI P + L++ L
Sbjct: 656 NGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQAL 693
Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + LI + ART + ++A+ +E M+++ PD T+ ++ K G A +
Sbjct: 152 PNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEV 211
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP--EKHAYDPPEEI 252
+ +M+ P P R L ++ LL++K K+ E+F EK + PP+ I
Sbjct: 212 FHEMMAMGFVP---PDRALHTAMV-RTLLKAKRVKEAREVFGQMEKCGF-PPDAI 261
Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
++L + AVL L+ T A+ F +Q +Q D + Y L+ L ++
Sbjct: 83 QVLGSHVAAVLRSLK---VTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCY 139
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ E M K + P++ ++ +IR F + DA+ +E M + P+ F IL+
Sbjct: 140 AIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDC- 198
Query: 223 LPHPLLRSKVKKDFEELFPEKHA--YDPPE 250
L ++ + + E+F E A + PP+
Sbjct: 199 ----LCKAGMDEKAFEVFHEMMAMGFVPPD 224
Score = 37.7 bits (86), Expect = 5.1, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL--KDGSPADAMNIYEDMIK 205
+I+ L +TG+++EA ++++ M E PD+ TY +I G ++ A + D+ K
Sbjct: 512 IIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEK 571
Query: 206 SPDPPEELPFRILLKGL 222
P+ + + L GL
Sbjct: 572 VGYLPDAVTYTPLCIGL 588
>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI L G M EA ++++S+ + L P+S Y +I G+ K+GS A+ +
Sbjct: 436 PDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRL 495
Query: 200 YEDMIKSPDPPEELPF 215
+M+ S P F
Sbjct: 496 LNEMVHSGMVPNVASF 511
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ IY LI + G + A ++ M + L P+ TY+ ++ GF K G +
Sbjct: 190 SPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+YE+M +S P + L+
Sbjct: 250 MYENMKRSGIVPNAYAYNCLIS 271
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + K P+ Y LI GKM+ A++++ ++ L P TY +I
Sbjct: 317 AVKLVHKVNKVGL-SPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLI 375
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ K + A A+++ ++M + P ++ + IL+
Sbjct: 376 AGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
D++++ + P Y LI A AR +A ++ M K L PD TY+ +I G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHG 447
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ +A +++ + + P + + ++ G
Sbjct: 448 LCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Query: 127 KIFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K F I+ ++ +P+ Y ++ A + GK+ EA+ + + M +D+ P +Q Y +I
Sbjct: 451 KCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAII 510
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+++ GS A + E M S PP + + +L+KGL
Sbjct: 511 DAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLC 549
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ L R G+M E V + M + PD TY+ + G + G ++
Sbjct: 255 KPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLS 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++E+ +K ILL GL
Sbjct: 315 LFEESVKKGVKIGAYTCSILLNGLC 339
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A+ Y +I L + G +A+++++ M ++ + P+ TY +I G +K G +
Sbjct: 186 PNAFSYNVVIAGLWKAGTDCDAVKLFDEMPEKAVVPNHITYNTMIDGHIKKGDLESGFRL 245
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M++ P + + +LL GL
Sbjct: 246 WSQMLRHGLKPNVITYNVLLSGLC 269
Score = 40.0 bits (92), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+FD + ++ P+ Y +I + G + ++W M + L P+ TY ++
Sbjct: 207 AVKLFDEMPEK-AVVPNHITYNTMIDGHIKKGDLESGFRLWSQMLRHGLKPNVITYNVLL 265
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G + G + + ++M P+ + IL G
Sbjct: 266 SGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDG 302
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ P + LI A R G++ + + M+++ L P+ +Y ++ F K+G
Sbjct: 425 EKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKI 484
Query: 194 ADAMNIYEDM 203
+A+ I +DM
Sbjct: 485 LEAVAILDDM 494
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +P +++ I A + G+++EA + M+++ PD YT VI G K G
Sbjct: 420 QNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLD 479
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
DAM+ + MI P+ + F L+ G H K +K EELF E
Sbjct: 480 DAMSRFCQMIDDGLSPDIITFNTLIHGFALH----GKWEKA-EELFYE 522
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +I L + M++A V + M E + P+ TY +I G+L G +A+ I
Sbjct: 285 PNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRI 344
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDPPEEIFGKL 256
++M + P + + +L+ L +S + + E+F + P +G L
Sbjct: 345 LKEMSRDGQRPNVVTYSMLID-----CLCKSGLHAEAREIFNSMIQSGQKPNASTYGSL 398
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI +G+ EA+++ + M ++ P+ TY+ +I K G A+A I
Sbjct: 320 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREI 379
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ MI+S P + LL G
Sbjct: 380 FNSMIQSGQKPNASTYGSLLHG 401
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 93 LQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLII 150
L + IKT LR + +L L ++ T A+ I ++R+ + PD + Y L+
Sbjct: 167 LGQIIKTG-LRAQAVTFTPLLRTLCAEKRTSDAMNI--VLRRMPELGCTPDVFSYTTLLK 223
Query: 151 ALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
L K EA ++ M ++ + P+ +YT VI GF K+G A ++ M+
Sbjct: 224 GLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGI 283
Query: 209 PPEELPFRILLKGLL 223
PP + ++ GL
Sbjct: 284 PPNVVTCNSVIDGLC 298
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q + PD Y +I L + G++++AM + M + L PD T+ +I GF G
Sbjct: 454 QQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKW 513
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A ++ +M+ PP F ++ L
Sbjct: 514 EKAEELFYEMMDRGIPPNVNTFNSMIDKL 542
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + + ++ PDA Y L+ A AR G + + ++WE M K D TY +I
Sbjct: 380 AEQLFNDLESRGFF-PDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMI 438
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ K G A+ +Y DM S P+ + + +L+ L
Sbjct: 439 HMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSL 476
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q + LA++++ ++ PDA Y LI +L +T K+ EA V M + P
Sbjct: 443 KQGQNELALQLYRDMQSSG-RNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTL 501
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+TY+ +I G+ K G P +A ++ M++S P+ L + ++L
Sbjct: 502 KTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVML 543
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + QPD + Y +I R G +A Q++ + FPD+ +Y ++
Sbjct: 345 AAKVFDDMEAHHC-QPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLL 403
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
F ++G+ I+E+M+K +E+ + ++
Sbjct: 404 YAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMI 438
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+++ + +R+ +PD Y LI A +R + EA +V++ M PD TY +
Sbjct: 309 LAIELLNEVRRSG-LRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPDLWTYNAM 367
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
I + + G A ++ D+ P+ + + LL + KVK+ +EE+
Sbjct: 368 ISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVE-KVKEIWEEM 422
Score = 38.5 bits (88), Expect = 2.9, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y LI A+ GK EA + ++ M + + PD Y+ ++ L+ P AM
Sbjct: 498 KPTLKTYSALICGYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIHLRFNEPKRAMT 557
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+Y++M+ + + ++L+ L
Sbjct: 558 LYKEMLHDGITLDHSLYELMLRTL 581
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E ++++ +R++ Y+ D + Y L+ ALA+ G +++A QV+E M+++ PD+
Sbjct: 140 RSREVSKGFQVYEEMRRKG-YKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +IR K G + ++ +++M+ + F +++ L
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+++ +PD Y LI L + G ++EA +++ M+++ PD TY+ +I
Sbjct: 424 ASELFEVMEASSC-KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILI 482
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K A +++++MI P + + ILL L
Sbjct: 483 ECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCL 520
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD + Y +I + R G +++A +++E M PD TY +I K G
Sbjct: 397 KTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDL 456
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A ++++M + P+ + IL++
Sbjct: 457 DEAHMLFKEMQEKGYDPDVFTYSILIE 483
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ Y PD + Y LI ++ K+ A +++ M E P+ TY ++ + G
Sbjct: 467 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 526
Query: 194 ADAMNIYEDMIKSPDPPEELPFRIL 218
+A +YE M + P+ + + IL
Sbjct: 527 EEAHKLYETMKQQGLIPDSITYSIL 551
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
Y YK ++ A R+ ++++ QV+E MR++ D Y ++ K G A ++E
Sbjct: 128 GYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFE 187
Query: 202 DMIKSPDPPEELPFRILLK 220
DM + P+ + IL++
Sbjct: 188 DMKQKHCVPDAYTYTILIR 206
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 8/104 (7%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
VK+ I+ ++ Y+ PD + Y LI L G+++EA Q++ M +P+
Sbjct: 268 VKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNE 327
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TYT +I GF K D I+ +M + + + +L++G
Sbjct: 328 VTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQG 371
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IF+ + + +P+ Y L+ L G+ ++A + M K + P+ T+T +I
Sbjct: 206 AVEIFNQM-GDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALI 264
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
F+K G +A +Y+ MI+ P+ + L+ GL + L + ++ F + E +
Sbjct: 265 DAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRL-DEARQMFYLM--ESN 321
Query: 245 AYDPPEEIFGKL 256
Y P E + L
Sbjct: 322 GYYPNEVTYTTL 333
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 67/135 (49%), Gaps = 9/135 (6%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+V+ L E+ R + ++ D++++ QP+ + LI A + GK+ EA ++++
Sbjct: 227 SLVSGLCEIGRWSDAAWLLR--DMMKRG--IQPNVITFTALIDAFVKVGKIMEAKELYKV 282
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227
M + ++PD TYT +I G G +A ++ M + P E+ + L+ H
Sbjct: 283 MIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLI-----HGF 337
Query: 228 LRSKVKKDFEELFPE 242
+SK +D ++F E
Sbjct: 338 CKSKRVEDGTKIFYE 352
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ + Y P+ Y LI ++ ++ + +++ M ++ L ++ TYT +I+G+ G P
Sbjct: 319 ESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRP 378
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A ++ M PP+ + +LL GL
Sbjct: 379 DVAQEVFNQMGSRRAPPDIRTYNVLLDGLC 408
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD I ++P+ Y LI L + +N A++++ M + P+ TY ++
Sbjct: 171 ALALFDQIVGMG-FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLV 229
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G + G +DA + DM+K P + F L+ +
Sbjct: 230 SGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFV 268
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L G + +A+ +++ MRK ++ + TYT +I+G K G DA ++
Sbjct: 395 PDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDL 454
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ + P + + ++ G
Sbjct: 455 FCSLFSKGMKPNVITYTTMISGFC 478
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 14/125 (11%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+ D +PD +Y ++I A G M+ A+ + + M+KE P S+T+ +I GF +
Sbjct: 529 DVIK--DGLKPDVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFMPIIHGFAR 586
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL--------FP 241
G A+ I++ M +S P F L+ GL+ + K++K E L P
Sbjct: 587 AGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVE----KRKMEKAVEILDEMALAGVSP 642
Query: 242 EKHAY 246
++H Y
Sbjct: 643 DEHTY 647
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A++IFD++R+ P + + L++ L KM +A+++ + M + PD
Sbjct: 586 RAGEMRRALEIFDMMRRSGCI-PTVHTFNALVLGLVEKRKMEKAVEILDEMALAGVSPDE 644
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDM 203
TYT ++ G+ G A + M
Sbjct: 645 HTYTTIMHGYAALGDTGKAFEYFTKM 670
Score = 43.5 bits (101), Expect = 0.094, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R EE L V F + K+ + P Y LI + GK+++A++V + M+ + +
Sbjct: 448 RNEEKCLIV--FKRL-KECGFAPSVITYGCLINMYTKIGKVSKALEVSKMMKSVGIKHNM 504
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+TY+ +I GFLK +A ++ED+IK P+ + + ++K
Sbjct: 505 KTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAF 549
Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + + +I AR G+M A+++++ MR+ P T+ ++ G ++ A+
Sbjct: 571 RPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVE 630
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I ++M + P+E + ++ G
Sbjct: 631 ILDEMALAGVSPDEHTYTTIMHG 653
Score = 41.2 bits (95), Expect = 0.42, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ ++Y LI AR G + EA + + M +E + PD TYT I K G A
Sbjct: 713 NTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTM 772
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
E+M + P + L+ G LP L + L P+K Y
Sbjct: 773 EEMEAAGVKPNVKTYTTLIHGWANASLPEKALSCFEELKLAGLKPDKAVY 822
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L+E + E+ AV+I D + PD + Y ++ A G +A + + M
Sbjct: 615 LVLGLVEKRKMEK---AVEILDEMALAG-VSPDEHTYTTIMHGYAALGDTGKAFEYFTKM 670
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
R E L D TY +++ K G A+ + +M P + IL+ G
Sbjct: 671 RNEGLQLDVFTYEALLKACCKSGRMQSALAVTREMNAQKIPRNTFVYNILIDG 723
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E ++++ +R++ Y+ D + Y L+ ALA+ G +++A QV+E M+++ PD+
Sbjct: 140 RSREVSKGFQVYEEMRRKG-YKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 198
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +IR K G + ++ +++M+ + F +++ L
Sbjct: 199 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 243
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+++ +PD Y LI L + G ++EA +++ M+++ PD TY+ +I
Sbjct: 424 ASELFEVMEASSC-KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILI 482
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K A +++++MI P + + ILL L
Sbjct: 483 ECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCL 520
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 43/87 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD + Y +I + R G +++A +++E M PD TY +I K G
Sbjct: 397 KTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGDL 456
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A ++++M + P+ + IL++
Sbjct: 457 DEAHMLFKEMQEKGYDPDVFTYSILIE 483
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ Y PD + Y LI ++ K+ A +++ M E P+ TY ++ + G
Sbjct: 467 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 526
Query: 194 ADAMNIYEDMIKSPDPPEELPFRIL 218
+A +YE M + P+ + + IL
Sbjct: 527 EEAHKLYETMKQQGLIPDSITYSIL 551
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
Y YK ++ A R+ ++++ QV+E MR++ D Y ++ K G A ++E
Sbjct: 128 GYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFE 187
Query: 202 DMIKSPDPPEELPFRILLK 220
DM + P+ + IL++
Sbjct: 188 DMKQKHCVPDAYTYTILIR 206
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF ++RKQ WYQP Y L++ L + + EA ++E M E L P YT ++
Sbjct: 107 ALEIFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEASLLFEIMLSEGLKPTVDVYTALV 166
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLK 220
+ + G A + EDM D P+ + IL++
Sbjct: 167 SAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTYSILIR 203
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAY 143
FK EE + +K ++ + +++ L + R+EE + DI+R+ ++ +PD
Sbjct: 311 FKLKEEMVTSNVK--LVSAVYSTLISALFKHGRKEE------VSDILREMGENGCKPDTV 362
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y +I + + A +V + M ++ PD ++ +I K+G AM++ EDM
Sbjct: 363 TYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDM 422
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ PP+ L +RI+ GL L+ E +F Y P E KL
Sbjct: 423 PRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIF---KGYVPRNESINKL 472
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRG 186
+FD ++K+ +P+ + LI L+ K+ EA+++ E M K + P++ YT +I+G
Sbjct: 242 VFDEMQKRG-VKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKG 300
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
F G A + E+M+ S + L+ L H
Sbjct: 301 FCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKH 339
>gi|449442465|ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
gi|449505643|ref|XP_004162530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
Length = 475
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQV 164
+DI I L +E LA + I+RK + D +Y +I G+M++AM++
Sbjct: 127 VDIRMFKIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEMDKAMEL 186
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ M D+ P+ TY +++GF G DA +++DM ++ P + + +L+ G
Sbjct: 187 MKEMDSVDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVLVNG 243
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDG 191
K++ P+ +Y L+ R M+ M++ + M K+ P++ TYT +I+ ++G
Sbjct: 226 KENGCAPNTVVYSVLVNGAIRLRIMDRLMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEG 285
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLK 220
P +A+ + + M + P + L+K
Sbjct: 286 HPLEALKVLDRMEEYGYAPNRVAVSFLVK 314
>gi|302791145|ref|XP_002977339.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
gi|300154709|gb|EFJ21343.1| hypothetical protein SELMODRAFT_32460 [Selaginella moellendorffii]
Length = 336
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +TG++ EA +++ M+ + PD TY+ +I GF K A +
Sbjct: 100 PDINTYNTLIDGLCKTGRVPEANRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTL 159
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
++DM+K P+ + F L++G L+ D E L E A D +++
Sbjct: 160 FDDMLKQAALPDVVTFPTLVEGYCNAGLV-----DDAERLLEEMVASDCSPDVY 208
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + PD Y LI + ++N A +++ M K+ PD T+ ++ G+ G
Sbjct: 129 KAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLV 188
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
DA + E+M+ S P+ + L+
Sbjct: 189 DDAERLLEEMVASDCSPDVYTYTSLV 214
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 35/84 (41%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L T ++ + + E M PD TY +I G K G +A +
Sbjct: 65 PNMVTYNSLIHGLCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEANRL 124
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M P+ + + L+ G
Sbjct: 125 FGEMKAKFCNPDVITYSCLIGGFC 148
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D + Y+ ++ L RTG+M+ A+++ E++++ P Y +IRG + AM
Sbjct: 243 KADMFAYRMMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELRKAME 302
Query: 199 IYEDMIKS 206
+ E+M S
Sbjct: 303 VLEEMTLS 310
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A +FD + KQ PD + L+ G +++A ++ E M D PD TYT +
Sbjct: 155 MACTLFDDMLKQAAL-PDVVTFPTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSL 213
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDP----PEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ F K +A + + M K + +R+++ GL ++ E L
Sbjct: 214 VDDFCKVKRMVEAHRVLKRMAKGGSNKNCKADMFAYRMMMDGLCR----TGRMSAALELL 269
Query: 240 FPEKHAYDPP 249
K + PP
Sbjct: 270 EAIKQSGTPP 279
>gi|226493938|ref|NP_001152190.1| ATP binding protein [Zea mays]
gi|195653677|gb|ACG46306.1| ATP binding protein [Zea mays]
gi|413926813|gb|AFW66745.1| ATP binding protein [Zea mays]
Length = 376
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+++F +R D PD Y LI LAR G + +A ++M E PD TYT ++
Sbjct: 203 LRVFRQMR-SDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMN 261
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G A+ + E+M P E + LL GL
Sbjct: 262 GMCVKGDALGALKLLEEMQGKGCQPNERTYSTLLMGLC 299
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++A+ + R+ E ++ ++R + DA++Y L+ A ++V+ M
Sbjct: 151 LLALADAVCRRGEPREISRVLPVLRDH-GVRADAHLYNALMKANVAADDPGAVLRVFRQM 209
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
R + + PD TY +I G + G A A + M P+ + + L+ G+
Sbjct: 210 RSDGVDPDLVTYNTLIFGLARAGMVAKARAFLDAMAAEGHLPDVVTYTSLMNGMC 264
>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 500
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 6/142 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R+ + A ++F + ++ P Y +I LAR G +++A+++++ M + + P
Sbjct: 228 LCRRSRRVEAQELFSEM-VENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAP 286
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK- 234
+ TY+ +I G K G A A+++ E + K P + + ++ GL LLR ++
Sbjct: 287 NVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVL 346
Query: 235 DFEELFPEKHAYDPPEEIFGKL 256
D L K P +FGKL
Sbjct: 347 DRMRLQGRK----PDAGLFGKL 364
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F I K PDA Y LI L R + EA +++ M + + P TYT +I
Sbjct: 206 AVRLFRNIPK-----PDACSYNTLIDGLCRRSRRVEAQELFSEMVENGIAPTVVTYTTII 260
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++G DA+ ++++M + P + + L+ GL
Sbjct: 261 NWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGLC 299
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + ++ P+ Y LI L + G+ A+ + E + KE P++ Y+ VI
Sbjct: 272 ALEMFDEMGRRG-IAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVI 330
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G +AM + + M P+ F L+ GL
Sbjct: 331 NGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLC 369
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ IY +I L + G + EAM+V + MR + PD+ + ++I G G +A N
Sbjct: 321 PNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANY 380
Query: 200 YEDMIKSPDPPEELPFRILLK 220
++M+ + P + + + ++
Sbjct: 381 LDEMVLAGVQPNRVTWSLHVR 401
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +R Q + +PD + Y +LI L + G+++EA + M++E PD+ +I
Sbjct: 284 ALSLFEEMRHQ-YCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMI 342
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G DAM ++++M P + + ++K L S+V FE +
Sbjct: 343 NFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERM 397
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + K PD Y Y L+ LARTG ++EA+ M++ PD +Y ++
Sbjct: 495 AINMFDEMNKLGC-APDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIIL 553
Query: 185 RGFLK 189
G K
Sbjct: 554 NGLQK 558
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A + G+ + A+Q+ M+ + P ++ YT ++ F K A+++
Sbjct: 228 PDTMTYSALISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLVALFFKLNDVHGALSL 287
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M P+ + L++GL
Sbjct: 288 FEEMRHQYCRPDVFTYTELIRGL 310
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +L R++ A+++ + + K + QP IY L+ + ++ A+ ++E M
Sbjct: 236 LISAFCKLGRRDS---AIQLLNEM-KDNGMQPTTKIYTMLVALFFKLNDVHGALSLFEEM 291
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213
R + PD TYTE+IRG K G +A + + +M + P+ +
Sbjct: 292 RHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTI 336
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEV 183
A+ IF I+ + QP A Y +II L G+ + +++ M E FPD+ TY+ +
Sbjct: 178 AIAIFYQIKTRKC-QPTAQAYNSMIIMLMHEGQYEKVHELYNEMSTEGHCFPDTMTYSAL 236
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
I F K G A+ + +M + P + +L+
Sbjct: 237 ISAFCKLGRRDSAIQLLNEMKDNGMQPTTKIYTMLV 272
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ +PD + ++I L + G++++AM++++ M P TY +I+ + S
Sbjct: 327 QREGCRPDTIVMNNMINFLGKAGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKALFESKSR 386
Query: 194 ADAM-NIYEDMIKSPDPPEELPFRILLKGLL 223
A + + +E M +S P + IL+ G
Sbjct: 387 ASEVPSWFERMKESGISPSSFTYSILIDGFC 417
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI + G++ EA ++W+ M ++ P+ TY +I+GFLK G + + + E+M+
Sbjct: 404 YNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEML 463
Query: 205 KSPDPPEELPFRILLKGLL 223
E + IL++GLL
Sbjct: 464 DKGCLLNESTYLILVEGLL 482
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+ I A ++F + W PDA Y L+ + G+ +A++V + M + + P+ TY
Sbjct: 242 DMIGAKRVFGELFDHGWL-PDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITY 300
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212
+I G+ K+ +A+N+ DM++ P
Sbjct: 301 GVIILGYCKERKSGEALNLLNDMLEKKYIPNS 332
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 54/128 (42%), Gaps = 36/128 (28%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ----------- 178
D++ K+ Y P++ + +I L G++ EA ++WE + K++ PD+
Sbjct: 322 DMLEKK--YIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCK 379
Query: 179 -----------------------TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
TY +I G + G +A +++DM++ P E +
Sbjct: 380 EGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTY 439
Query: 216 RILLKGLL 223
+L+KG L
Sbjct: 440 NMLIKGFL 447
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ G M A +V+ + PD+ TYT ++ G++K G DA+ +
Sbjct: 225 PNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKV 284
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M ++ P ++ + +++ G
Sbjct: 285 MDEMEENGVEPNDITYGVIILG 306
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + GK E ++V E M + + TY ++ G LK G + +NI
Sbjct: 434 PNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGKREELLNI 493
Query: 200 YEDMIKS 206
+I S
Sbjct: 494 LSMIISS 500
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ +Y +I ++ + +NEA ++ M + + PD TY+ +I GF G DA+
Sbjct: 193 QPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIG 252
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ MI P+ F IL+ G
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFC 277
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI GK+N+A+ ++ M E++ PD T++ ++ GF K+G +A N
Sbjct: 228 SPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKN 287
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M+K P+ + + L+ G
Sbjct: 288 VLAMMMKQGIKPDVVTYCSLMDG 310
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQ 135
+I G + K +E + F + H ++ D+V +++ L + + A+K+ D
Sbjct: 342 MINGFCKIKKVDEAMNLFKEMHCKNIIP-DVVTYNSLIDGLCKSGKISYALKLVD--EMH 398
Query: 136 DWYQP-DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D P D Y ++ AL + ++++A+ + M+ E + PD TYT +I G K G
Sbjct: 399 DRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLK 458
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
DA NI+ED++ + ++++G + L
Sbjct: 459 DAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ + Q + Y +I + K++EAM +++ M +++ PD TY +I
Sbjct: 320 AKSIFNTM-AQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLI 378
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G + A+ + ++M P +++ + +L L
Sbjct: 379 DGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALC 417
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y + L+ + G++ EA V M K+ + PD TY ++ G+ A +
Sbjct: 263 NPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKS 322
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFPEKHA 245
I+ M + + I++ G K+KK E LF E H
Sbjct: 323 IFNTMAQGGVTANVQSYNIMINGF-------CKIKKVDEAMNLFKEMHC 364
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + ++ KQ +PD Y L+ ++N+A ++ +M + + + Q+Y +I
Sbjct: 285 AKNVLAMMMKQGI-KPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMI 343
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K +AMN++++M P+ + + L+ GL
Sbjct: 344 NGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLC 382
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + QPD Y Y LI L + G++ +A ++E + + TYT +I+GF +
Sbjct: 433 KDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLF 492
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFEELFPEKHAY 246
A+ + M + P + I++ L + LLR + + LF K AY
Sbjct: 493 DKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGL--LFGWKKAY 550
>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
Length = 595
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV+ L++ R+ V + + K D IY + + G MNEA+++ M
Sbjct: 72 IVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEM 131
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ L PD YT +I G+ G +A ++E+M+K+ P+ + + IL G L+
Sbjct: 132 KCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLV 191
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + + K PD Y LI G+M A QV+E M K ++ PD TY +
Sbjct: 124 AVKLLNEM-KCGGLTPDKIHYTCLINGYCLKGEMQNAQQVFEEMLKANIEPDIVTYNILA 182
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K G + ++ + M P L + I + G
Sbjct: 183 SGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFC 221
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI + + EA ++++ M ++ L PD+ YT +I G+ G + A +
Sbjct: 433 EPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAED 492
Query: 199 IYEDMIKSPDPPEELPF 215
+ ++MI P+EL F
Sbjct: 493 LLQEMIDKGIEPDELTF 509
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + G M++A + M + L D YT ++ G+ K G +A +
Sbjct: 313 PDVISYSKLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQL 372
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPL 227
+ M P+ + + +LL G L L
Sbjct: 373 FVQMTNLGIKPDVIAYTVLLDGHLKETL 400
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A K+F+ +++Q QP+ Y LI L GK++EA+ + + M L P+
Sbjct: 311 RDENVTAAKKVFEEMQRQG-LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
TY +I GF K +A + +D+ K P + F L+
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLI 411
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y L+ AL + G+ +A+++ + M + L P TY +I G+ ++G+ A+N
Sbjct: 471 KADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALN 530
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYD 247
+ M K + + +L+KG + LL ++K L P + YD
Sbjct: 531 VRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG---LIPNRTTYD 583
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
RL + +L+ L ++ + ++ ++IR++ + + +I L + GK +
Sbjct: 190 FRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR--IGVNVVTFDVVINGLCKVGKFQK 247
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
A V E M+ P TY +I G+ K G A + ++M+ P E+ F IL+
Sbjct: 248 AGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307
Query: 221 GLLPHPLLRSKVKKDFEEL 239
G + + KK FEE+
Sbjct: 308 GFCRDENV-TAAKKVFEEM 325
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y +I + GKM +A + + M + + P+ T+ +I GF +D + A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
++E+M + P + + L+ GL +
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSN 347
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI A + G+M++A + M + P+ TY +I GF ++G+ +A +
Sbjct: 402 PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
++M + + + + IL+ L R V+ +E+F
Sbjct: 462 AKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL-LDEMF 501
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI+ R G + EA ++ + M L D TY ++ K G A+ +
Sbjct: 437 PNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRL 496
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++M + P L + L+ G
Sbjct: 497 LDEMFEVGLNPSHLTYNALIDG 518
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 10/154 (6%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIE-LERQEETILAVKIFDIIRKQ 135
+I+G R + +E +K K LK D+V +L++ L ++ ET AV++ D + +
Sbjct: 445 LIVGFCREGNVKEA-RKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEV 503
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
P Y LI R G A+ V M K+ + TY +I+GF G +
Sbjct: 504 G-LNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEE 562
Query: 196 AMNIYEDMIKSPDPPEELPFRILL-----KGLLP 224
A + +M++ P + IL KG +P
Sbjct: 563 ANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIP 596
>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 460
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ PDA Y LI AR G A+ +++ M + + PD+ +Y ++ + G P
Sbjct: 72 REAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSYNALMHCLFRSGHP 131
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA ++ DM + P + LL GL
Sbjct: 132 EDAYRVFADMAEKGVAPCATTYNTLLDGL 160
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A R ++ V MR+ + PD+ TY +I G + G A+++
Sbjct: 43 PDVVTYNTLLAAHCRASGLDAGFAVLHRMREAGVSPDAITYNSLIAGAARRGLTMRALDL 102
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+++M+++ P+ + L+ H L RS +D +F +
Sbjct: 103 FDEMLQAGVAPDAWSYNALM-----HCLFRSGHPEDAYRVFAD 140
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ T+ A+ +FD + Q PDA+ Y L+ L R+G +A +V+ M ++ + P +
Sbjct: 92 RRGLTMRALDLFDEM-LQAGVAPDAWSYNALMHCLFRSGHPEDAYRVFADMAEKGVAPCA 150
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY ++ G + G +A ++ + ++ P + + ++ GL
Sbjct: 151 TTYNTLLDGLFRFGHATNAYRMFRYLQRTGLPVGIVTYNTMINGLC 196
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ Y PD + Y +I AL + G+M EA E M + DS Y +I K+G
Sbjct: 248 EGGYIPDLFPYCTVISALVKKGRMEEANTYSELMIRSGFRLDSACYNTLIYLRCKEGKLD 307
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + M + +E F IL+ GL
Sbjct: 308 DAFELLSMMEEGGLESDEYTFSILVNGLC 336
>gi|297847648|ref|XP_002891705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337547|gb|EFH67964.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 823
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+Q++ A+KIF + K +P+ Y LI G + A + ++ M+ DL P+
Sbjct: 567 KQQDMATAIKIFRDMEKNKC-KPNVVTYTSLINGFCCQGDFSLAEETFKEMQSRDLVPNV 625
Query: 178 QTYTEVIRGFLKDGSPAD-AMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT +IR F K+ S + A+ +E M+ + P E+ F LL+G +
Sbjct: 626 VTYTTLIRSFAKESSTLEKAVYYWELMMTNKCVPNEVTFNCLLQGFV 672
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + +I R+G ++EA+ M +E L PD TY+ +I G++K A A+ I+
Sbjct: 519 DVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIF 578
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF---EELFPEKHAYD 247
DM K+ P + + L+ G + DF EE F E + D
Sbjct: 579 RDMEKNKCKPNVVTYTSLINGFC--------CQGDFSLAEETFKEMQSRD 620
Score = 45.1 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY L+ L +TG+ A ++ M + PD+ Y +I GF++ G +A +
Sbjct: 448 PDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRSILPDAYVYATLIDGFIRSGDFDEARKV 507
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAY 246
+ ++ + + ++KG +L + + + E L P+K Y
Sbjct: 508 FTLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTY 558
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 37/83 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I + M A++++ M K P+ TYT +I GF G + A
Sbjct: 553 PDKFTYSTIIDGYVKQQDMATAIKIFRDMEKNKCKPNVVTYTSLINGFCCQGDFSLAEET 612
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M P + + L++
Sbjct: 613 FKEMQSRDLVPNVVTYTTLIRSF 635
>gi|242060260|ref|XP_002451419.1| hypothetical protein SORBIDRAFT_04g001815 [Sorghum bicolor]
gi|241931250|gb|EES04395.1| hypothetical protein SORBIDRAFT_04g001815 [Sorghum bicolor]
Length = 613
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR------KEDLFPDSQTY 180
K+F + + + PD Y ++ AL R G + A ++++ MR K D FP+ TY
Sbjct: 131 KLFLFLPETYAFAPDVITYNSMLSALCRAGDLATAHKLFDGMRVSGQGGKADAFPNVVTY 190
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T +IR +A+++++ M+ PP + + +++G
Sbjct: 191 TTMIRACCAKRLADEALSLFKMMVADGVPPNRITYNTMVQGFC 233
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +K LI+ + G E Q+ SM K DL PD++ Y VI GF++ G A
Sbjct: 365 DFLAFKTLILGHCKEGDFEEGYQLVLSMLKRDLRPDTECYIAVIDGFMQKGRMKSAWEAL 424
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
M+ S P F +L GLL
Sbjct: 425 HRMLNSGLQPSTSTFHSVLLGLL 447
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D ++PD + L+ A R G++ +AM+V++ M + + DS +Y+ VIR ++G
Sbjct: 248 DSFKPDTCTFNTLMAAHCREGRIEDAMKVFDQMMELRVRRDSASYSMVIRALCENGEFGR 307
Query: 196 AMNIYEDMIK 205
+D+++
Sbjct: 308 VEEFVDDLLE 317
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E A K+F+ +++Q QP+ Y LI L GK++EA+ + + M L P+
Sbjct: 311 RDENVTAAKKVFEEMQRQG-LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
TY +I GF K +A + +D+ K P + F L+
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLI 411
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 4/139 (2%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160
RL + +L+ L ++ + ++ ++IR++ + + +I L + GK +
Sbjct: 190 FRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRR--IGVNVVTFDVVINGLCKVGKFQK 247
Query: 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
A V E M+ P TY +I G+ K G A + ++M+ P E+ F IL+
Sbjct: 248 AGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307
Query: 221 GLLPHPLLRSKVKKDFEEL 239
G + + KK FEE+
Sbjct: 308 GFCRDENV-TAAKKVFEEM 325
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 42/88 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y +I + GKM +A + + M + + P+ T+ +I GF +D + A
Sbjct: 260 FSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAK 319
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
++E+M + P + + L+ GL +
Sbjct: 320 KVFEEMQRQGLQPNVVTYNSLINGLCSN 347
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI A + G+M++A + M + P+ TY +I GF ++G+ +A +
Sbjct: 402 PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKL 461
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M + + + + IL+ L R V+
Sbjct: 462 AKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495
>gi|414883744|tpg|DAA59758.1| TPA: hypothetical protein ZEAMMB73_211431 [Zea mays]
Length = 732
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ + +PD ++Y L+ + R G M+ M+VW+ M K+ + PD+ Y ++ G K G
Sbjct: 297 RNEVCRPDVFVYTALVKTMVRRGYMDGCMRVWDEMEKDGVEPDTMAYATMVGGLCKAGMV 356
Query: 194 ADAMNIYEDM 203
+A ++++M
Sbjct: 357 EEAAELFKEM 366
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 75/147 (51%), Gaps = 8/147 (5%)
Query: 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE----LERQEETIL-AVKIFDIIRKQDW 137
L + + E + F + L + + +V +L++ L ++ +L AV++FD +R++ +
Sbjct: 452 LACYAEKGEMVTFFGLVNKLAEMGLSVVEMLVDFMKLLAGKDGRVLKAVEVFDALRQKQY 511
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADA 196
IY LI L + +++ ++E M+ D PDS TY+ +I F+ +G+ +A
Sbjct: 512 CSVG--IYNILIENLLKIKDRKKSLLLFEEMQSSVDFKPDSCTYSHMIPCFVDEGNVKEA 569
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y M+K P + +L+KGL
Sbjct: 570 CSCYNTMMKENWIPSMSAYCVLVKGLC 596
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD + + QP + ++ ALA G ++ +++ MR E PD YT ++
Sbjct: 254 ALKLFDEM-SEGGVQPIPVTFAIMVRALAHAGMVDRLLEMIGRMRNEVCRPDVFVYTALV 312
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ ++ G M ++++M K P+ + + ++ G L ++ + ++ ELF E
Sbjct: 313 KTMVRRGYMDGCMRVWDEMEKDGVEPDTMAYATMVGG-----LCKAGMVEEAAELFKE 365
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L++++ +++++L +F+ ++ ++PD+ Y +I G + EA + +M KE+
Sbjct: 524 LLKIKDRKKSLL---LFEEMQSSVDFKPDSCTYSHMIPCFVDEGNVKEACSCYNTMMKEN 580
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS-PDPPEELPFRILL 219
P Y +++G K G A+++ +D + + + P E + + +
Sbjct: 581 WIPSMSAYCVLVKGLCKMGEINTAISLVKDCLGNIENGPAEFKYTLTI 628
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
KR D E +++ +K L+ + ++L +Q + A I + + + ++ D
Sbjct: 524 KRIDDATELIEQMVKEG-LQPSNITYNSILTHYCKQGDLKKAADILETM-TANGFEIDVV 581
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y LI L + G+ A+++ MR + + P + Y VI+ + + DA++++ +M
Sbjct: 582 TYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREM 641
Query: 204 IKSPDPPEELPFRILLKGLL 223
+ +PP+ L ++I+ +GL
Sbjct: 642 TEVGEPPDALTYKIVFRGLC 661
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD LI AL R ++ A+ + E M + PD T+T +++GF+++GS A+
Sbjct: 192 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALR 251
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M+++ P + +L+ G
Sbjct: 252 VKTKMMETGCSPTRVTVNVLING 274
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ Q+ + PD + Y +I L++ G+++EA + M PD+ T+ +I
Sbjct: 319 ALKVMDLML-QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 377
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELF 240
+A+++ ++ P+ F IL+ L PH +R FEE+
Sbjct: 378 VALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL-----FEEM- 431
Query: 241 PEKHAYDPPEEI 252
K + P+E+
Sbjct: 432 --KSSGCAPDEV 441
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI+AL ++ EA+ + + + L PD T+ +I K G P + +
Sbjct: 368 PDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 427
Query: 200 YEDMIKSPDPPEELPFRILLKGLLP 224
+E+M S P+E+ + IL+ L
Sbjct: 428 FEEMKSSGCAPDEVTYNILIDHLCS 452
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D ++PD Y + L + G ++ A++V + M +E PD TY VI K+G +
Sbjct: 294 DGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 353
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
A I M+ P+ F L+ L L
Sbjct: 354 AKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRL 386
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAY 143
+ D +K ++T ++D+V LI L + T +A+K+ +R + +P
Sbjct: 558 QGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK-GIRPTPK 616
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYED 202
Y +I +L R + +A+ ++ M + PD+ TY V RG + G P +A + +
Sbjct: 617 AYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVE 676
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M+ PE FR+L +GLL
Sbjct: 677 MVNKGFMPEFSSFRMLAEGLL 697
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y + LI AL + G + ++++E M+ PD TY +I G +A++
Sbjct: 402 SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALD 461
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
+ ++M + P + + ++ L + ++ EE+F + A+
Sbjct: 462 LLKEMESNGCPRSTVTYNTIIDALCKQMRI-----EEAEEVFDQMDAH 504
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L + R EE A ++FD + + A + LI L + ++++A ++ E M
Sbjct: 481 IIDALCKQMRIEE---AEEVFDQMDAHGISRS-AVTFNTLIDGLCKAKRIDDATELIEQM 536
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KE L P + TY ++ + K G A +I E M + + + + L+ GL
Sbjct: 537 VKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLC 591
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 130 DIIRKQD---WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
D++R Q Q D +Y L+ LA +M V+ M + PD T +I+
Sbjct: 145 DLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKA 204
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ A+ + E+M P+E F L++G + + + ++
Sbjct: 205 LCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALR 251
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ T + K+ D + K PD Y ++ L + GK++ A V+ M + + PD
Sbjct: 376 REGSTHVVKKLLDEMTKMR-VLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDV 434
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+Y ++ GF K DAM+++++M P+E+ +++++ GL+
Sbjct: 435 ISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLI 480
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI A R G + ++ + M K + PD YT V+ K+G A +
Sbjct: 361 RPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHS 420
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD-PPEEIFGKL 256
++ DM+++ P+ + + LL G ++ D LF E + P+E+ KL
Sbjct: 421 VFRDMVENGVNPDVISYNALLNG-----FCKTSRVMDAMHLFDEMQSKGLYPDEVTYKL 474
Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
++ +Y LI R G++++AM++ M + PD TY ++ ++G +A+ +
Sbjct: 223 NSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLV 282
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
E M +S P+ + LLKG
Sbjct: 283 ETMERSGVEPDLYSYNELLKGFC 305
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 52/96 (54%), Gaps = 3/96 (3%)
Query: 111 AVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
AV+ L + + +A +F D++ ++ PD Y L+ +T ++ +AM +++ M+
Sbjct: 404 AVVDHLCKNGKVDVAHSVFRDMV--ENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQ 461
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+ L+PD TY ++ G ++ + A +++ M++
Sbjct: 462 SKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMME 497
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI GK+ +A+ ++ M +++ PD T++ ++ GF KDG+ +A N+
Sbjct: 366 PDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNV 425
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K P+ + + L+ G
Sbjct: 426 LAMMMKQSIKPDVVTYSSLMDG 447
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+++R+ D QPD +Y +I + + +N+A ++ + +FPD TY +I G
Sbjct: 318 LELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISG 377
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F G DA++++ M P+ F IL+ G
Sbjct: 378 FCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGF 413
Score = 45.8 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y ++ AL + +++A+ + ++ + + PD TYT +++G + G DA
Sbjct: 540 QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARK 599
Query: 199 IYEDMI 204
++ED++
Sbjct: 600 VFEDLL 605
Score = 42.4 bits (98), Expect = 0.21, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 41/78 (52%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I + ++EAM++++ M + +FPD TY+ +I G K G + A+ + ++M
Sbjct: 476 YNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMH 535
Query: 205 KSPDPPEELPFRILLKGL 222
P+ + + +L L
Sbjct: 536 YRGQQPDIITYNSILDAL 553
Score = 40.8 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+F + + + PD Y LI L ++G+++ A+++ + M PD TY ++
Sbjct: 492 AMKLFKEMHHKQIF-PDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSIL 550
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
K A+ + + P+ + IL+KGL L +K FE+L + +
Sbjct: 551 DALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLED-ARKVFEDLLVKGY 609
Query: 245 AYD 247
D
Sbjct: 610 NLD 612
Score = 38.5 bits (88), Expect = 2.4, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A + ++ KQ +PD Y L+ ++N+A ++ +M + + Q+Y +I
Sbjct: 422 AKNVLAMMMKQS-IKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMI 480
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K +AM ++++M P+ + + L+ GL
Sbjct: 481 NGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGL 518
Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 5/105 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y + L+ + G + EA V M K+ + PD TY+ ++ G+ A +I
Sbjct: 401 PDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESI 460
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+ M + I++ G ++ +K LF E H
Sbjct: 461 FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMK-----LFKEMH 500
Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ L ++GK+ +A +V+E + + D YT +I+GF G +A+
Sbjct: 575 RPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALA 634
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M ++ P+ + I++ L
Sbjct: 635 LLSKMEENGCIPDAKTYEIIILSLF 659
>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI A AR G ++EAM++ M K+ + PD TYT ++ GF K G AM
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
++E+M + P F L+K
Sbjct: 417 KVFEEMRVAGCQPNICTFNALIK 439
Score = 46.6 bits (109), Expect = 0.009, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + K + PD Y L+ ++ + EAM+V + M P TY +I
Sbjct: 310 AAEVFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLI 368
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +DG +AM + M+K P+ + LL G
Sbjct: 369 SAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGF 406
Score = 44.7 bits (104), Expect = 0.034, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 75 EALFVILGLKRFKDDEEKLQKFI----KTHVLRLLKMDIVAVLIE-LERQEETILAVKIF 129
+ L +I GL +K +E L F + +L +VAV+I L ++ A +
Sbjct: 149 DILGIIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLL 208
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+R D D Y Y LI A A G+ EA+ V++ + +E P TY ++ + K
Sbjct: 209 HDLR-NDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGK 267
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKH 244
G P + D +KS +L L L + + FEE+ P+K
Sbjct: 268 MGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKV 327
Query: 245 AYDPPEEIFGK 255
Y+ +++GK
Sbjct: 328 TYNALLDVYGK 338
Score = 44.7 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 130 DIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
DI+R+ +PD + +I A R G+M EA +++ M+ L PD TY I +
Sbjct: 697 DILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY 756
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
D +A+++ + MIK+ P + + L+
Sbjct: 757 ASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLI 788
Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI + R EA +V+E M+ PD TY ++ + K P +AM +
Sbjct: 289 PDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEV 348
Query: 200 YEDMIKSPDPPEELPFRILLK-----GLLPHPL-LRSKVKK 234
++M S P + + L+ GLL + L+S++ K
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVK 389
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ +TGK + AM+V+E MR P+ T+ +I+ G+ + M
Sbjct: 393 KPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMK 452
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++E++ P+ + + LL + + S+V F+E+ ++ + P + F L
Sbjct: 453 VFEEIKICECVPDIVTWNTLL-AVFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTL 507
Score = 37.0 bits (84), Expect = 7.9, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L E+ + A+K+F+ +R QP+ + LI G E M+V+E ++
Sbjct: 402 LLSGFEKTGKDDYAMKVFEEMRVAGC-QPNICTFNALIKMHGNRGNFVEMMKVFEEIKIC 460
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ PD T+ ++ F ++G ++ ++++M ++ PE F L+
Sbjct: 461 ECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLI 508
>gi|356525788|ref|XP_003531505.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic-like [Glycine max]
Length = 572
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+Y Y LI + R G ++EA++++ + + D PD Y +I GF K ++
Sbjct: 444 FTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFCKAQRTDLSI 503
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
I+ M+ P E + IL++GL
Sbjct: 504 EIFLMMVNKGCVPNENTYTILVEGL 528
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y L+ L G +N+++Q+ + + K+ L P++ TY+ ++ K+ +AM +
Sbjct: 168 NTVTYNTLVKGLCMHGNLNQSLQLLDRLTKKGLIPNAFTYSFLLEAAYKERGVDEAMKLL 227
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+D+I P + + +LL GL +K F+EL
Sbjct: 228 DDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKL-FQEL 265
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+++L E + +E ++ + KQ++ D YK+LI +L R G A Q+ M
Sbjct: 385 ISMLSEQGKVQEAFFIIQ--SLGSKQNFPMHD--FYKNLIASLCRKGNTYPAFQMLYEMT 440
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K PDS TY+ +IRG ++G +A+ I+ + ++ P+ + L+ G
Sbjct: 441 KYGFTPDSYTYSSLIRGMCREGMLDEALKIFRILEENDHRPDIDNYNALILGFC 494
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ L+ L + K +A++V E M + PD+ +YT ++ K G+ A+
Sbjct: 96 KPEVNQATQLLYDLCKFNKARKAVRVMEMMVGSGIIPDAASYTHLVNFLCKRGNVGYAIQ 155
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ E M P + + L+KGL H L ++
Sbjct: 156 LVEKMEGHGFPTNTVTYNTLVKGLCMHGNLNQSLQ 190
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A+ Y L+ A + ++EAM++ + + + P+ +Y ++ G K+G +A+ +
Sbjct: 202 PNAFTYSFLLEAAYKERGVDEAMKLLDDIIAKGGEPNLVSYNVLLTGLCKEGRTEEAIKL 261
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++++ P + F ILL+ L
Sbjct: 262 FQELPVKGFSPSVVSFNILLRSLC 285
>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
Length = 1041
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI L R GK+ AM++ ++ L PD TY +I GF K G A
Sbjct: 618 HPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQ 677
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E M + P + + L+ GL
Sbjct: 678 LHEYMCQKGISPNIITYNALINGL 701
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI +TG + EA Q + M+K +L P++ TYT ++ G+ G ++
Sbjct: 827 KPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFA 886
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++MI P+ + + +++ L
Sbjct: 887 LFDEMIAKDIEPDGVTWSVMIDAHL 911
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I ++ K+ QPD Y +II L ++ KM EA M + L P+ TY +I
Sbjct: 500 AVRILKVMDKKG-VQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALI 558
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ K G A +++M+ P ++ L+ G
Sbjct: 559 HGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDG 595
Score = 44.7 bits (104), Expect = 0.037, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y LI ++G+M A + ++ M + P+ T +I G+ K+GS +A +
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATS 607
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEE--LFPEKHAYD 247
I+ M+ P+ + L+ GLL + L+ ++ +F E L P+ Y+
Sbjct: 608 IFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYN 660
Score = 44.7 bits (104), Expect = 0.039, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 44/87 (50%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q P+ Y LI L + G++ A ++++ + + L ++ TY +I G+ K G+ +
Sbjct: 684 QKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLS 743
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A ++++M PP+ + L+ G
Sbjct: 744 KAFRLFDEMTLKGVPPDSFVYSALIDG 770
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 3/160 (1%)
Query: 65 LWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAV--LIELERQEET 122
L RG KL ++ G+ +F D EK + ++ +K D +IE +E+
Sbjct: 368 LARGVKLNLFTYNALVKGVCKF-GDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQN 426
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
VK K+ P AY +I L R G + +A +V+E M + P++ YT
Sbjct: 427 TSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTT 486
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+I+G +++G +A+ I + M K P+ L + ++ GL
Sbjct: 487 LIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGL 526
Score = 41.6 bits (96), Expect = 0.28, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+I+ +P+A IY LI + G+ EA+++ + M K+ + PD Y VI
Sbjct: 465 ASRVFEIMVSLG-VKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVI 523
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K +A + +MI+ P + L+ G
Sbjct: 524 IGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHG 560
Score = 41.6 bits (96), Expect = 0.29, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ Y L+ + + G M +A + M + PD+QTY +I G+LK+ + + ++ +
Sbjct: 377 FTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSE 436
Query: 203 MIKSPDPPEELPFRILLKGLLPH 225
M KS P +++ GL H
Sbjct: 437 MKKSNLVPTAYTCGMIINGLCRH 459
Score = 41.6 bits (96), Expect = 0.36, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVW-ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD+++Y LI + G +A+ ++ ES++K F + + ++ GF K G +A
Sbjct: 759 PDSFVYSALIDGCRKEGNTEKALSLFLESVQKG--FASTSSLNALMDGFCKSGKVIEANQ 816
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ EDM+ P+ + + IL+
Sbjct: 817 LLEDMVDKHVKPDHVTYTILI 837
Score = 40.8 bits (94), Expect = 0.48, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + Y LI + + EA + E M + L P YT +I GF++ G +A +
Sbjct: 305 DVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVK 364
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
E+M+ + L+KG+
Sbjct: 365 EEMLARGVKLNLFTYNALVKGV 386
Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L R G+++EA ++ + M K+ L D TY+ +I GF K +A +
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
E+M P + + L+ G +
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFM 352
Score = 40.8 bits (94), Expect = 0.57, Method: Composition-based stats.
Identities = 19/83 (22%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G EA ++ M + PD +TY+ +I G L++G AM +
Sbjct: 584 PNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMEL 643
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ ++ P+ + ++ G
Sbjct: 644 LSEFLEKGLVPDVFTYNSIISGF 666
Score = 40.4 bits (93), Expect = 0.76, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 35/66 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L+ G+ +E +++ M +D+ PD T++ +I LK+G + +
Sbjct: 863 PNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKL 922
Query: 200 YEDMIK 205
+DM+K
Sbjct: 923 VDDMLK 928
Score = 38.9 bits (89), Expect = 1.9, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ ++GK+ EA Q+ E M + + PD TYT +I K G +A + DM K
Sbjct: 801 LMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRN 860
Query: 208 DPPEELPFRILLKG 221
P L + LL G
Sbjct: 861 LMPNALTYTALLSG 874
>gi|3695380|gb|AAC62783.1| F11O4.7 [Arabidopsis thaliana]
Length = 508
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y LI L GK +A+ VW+ ++ PD+ TY +I+G K DAM
Sbjct: 285 FGPDICTYNSLIHVLCLFGKAKDALIVWDELKVSGHEPDNSTYRILIQGCCKSYRMDDAM 344
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
IY +M + P+ + + LL G L
Sbjct: 345 RIYGEMQYNGFVPDTIVYNCLLDGTL 370
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y+ LI ++ +M++AM+++ M+ PD+ Y ++ G LK +A
Sbjct: 320 HEPDNSTYRILIQGCCKSYRMDDAMRIYGEMQYNGFVPDTIVYNCLLDGTLKARKVTEAC 379
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++E M++ + IL+ GL
Sbjct: 380 QLFEKMVQEGVRASCWTYNILIDGLF 405
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ +P+ Y LI AL RTG+ A + + M + L P+ TYT +I G K+G+
Sbjct: 616 EEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEGNWE 675
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DAM Y +M ++ P+ L + L KG
Sbjct: 676 DAMRFYFEMHQNGIHPDYLTHKALFKG 702
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y L+ + G + EA+ ++ +R L P TY +I G+ + G +A
Sbjct: 375 QPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARR 434
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF------EELFPEKHAYD 247
+ E+M++ P+ + IL+KG H + ++F + L P+ AY+
Sbjct: 435 LKEEMVEQGCLPDVCTYTILMKG--SHNACSLAMAREFFDEMLSKGLQPDCFAYN 487
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ QPD Y LI A G + EA + ++ M + L P + TYT I + + G+
Sbjct: 546 HNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLY 605
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK----VKKDFEE-----LFPEKHA 245
A + M++ P E+ + +L+ H L R+ + F E L P K+
Sbjct: 606 SAYGWFRKMLEEGVEPNEITYNVLI-----HALCRTGRTQLAYRHFHEMLERGLVPNKYT 660
Query: 246 Y 246
Y
Sbjct: 661 Y 661
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L ++G++ A + MR L PD TY ++ G+ K GS +A+ +
Sbjct: 341 PTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLL 400
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ D+ + P L + IL+ G
Sbjct: 401 FGDLRHAGLAPTVLTYNILIDG 422
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L +TG +N+A + M L PD TYT +I + G +A +
Sbjct: 517 DTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFF 576
Query: 201 EDMIKSPDPPEELPFRILL 219
+DMI P + + + +
Sbjct: 577 KDMISDGLAPSAVTYTVFI 595
>gi|125583699|gb|EAZ24630.1| hypothetical protein OsJ_08397 [Oryza sativa Japonica Group]
Length = 482
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q+E V +F ++KQ WY D IY LI + R G++ AM ++ MR PD+
Sbjct: 85 QQEMNFEVPVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTS 144
Query: 179 TYTEVIRGFL----KDGSPADAMNIYEDMIKSPD--PPEELPFRILLKGLLPHPLLRSK- 231
Y +I L K + A A+ +E M K+ D P + + ILL+ +
Sbjct: 145 VYNSLIGTHLHSRDKSKALAKALGYFEKM-KTIDRCQPNIVTYNILLRAFAQAGDTKQLD 203
Query: 232 -VKKDFEE--LFPEKHAYDPPEEIFGK 255
+ KD +E + P+ + Y+ + +GK
Sbjct: 204 ILFKDLDESPVSPDIYTYNGVMDAYGK 230
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ F+ ++ D QP+ Y L+ A A+ G + +++ + + + PD TY V+
Sbjct: 166 ALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFKDLDESPVSPDIYTYNGVM 225
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+ K+G + ++ M + P+ + F IL+ + + K
Sbjct: 226 DAYGKNGMITEMESVLVRMKSNQCRPDVITFNILI------------------DSYGRKQ 267
Query: 245 AYDPPEEIFGKL 256
A+D E++F L
Sbjct: 268 AFDKMEQVFKSL 279
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+ Y +I L R G M EA ++ E M + PD TY ++ G+ K+G+ A+
Sbjct: 281 QPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALV 340
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+ +M+++ P + + L+ +
Sbjct: 341 IHAEMVRNGVSPSVVTYTALINSMC 365
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA Y LI L ++ EA + + M L PD TYT +I + +G A++
Sbjct: 491 SPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALH 550
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK----VKKDFEELFPEKHAYD 247
++++MI P+ + + +L+ GL R K +EE P YD
Sbjct: 551 LHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYD 603
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI A + G+++EA + +SM + + P+ +Y +I G ++GS +A I
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 306
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E+M P+E+ + LL G
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNG 328
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
LER EE + V+ +++ K PD Y +I R G+++ A Q+ + M ++ + P
Sbjct: 437 LERMEEALGVVQ--EMVEK--GLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSP 492
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
D+ TY+ +I+G + +A ++ ++M+ PP+E + L+
Sbjct: 493 DAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 538
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P Y LI ++ + +N AM+ ++ MR L P+ +TYT +I GF + G
Sbjct: 347 RNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLN 406
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
+A I +M +S P + + + G
Sbjct: 407 EAYRILNEMTESGFSPSVVTYNAFIHG 433
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 43/89 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ + P Y I +M EA+ V + M ++ L PD +Y+ +I GF + G
Sbjct: 417 ESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELD 476
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + ++M++ P+ + + L++GL
Sbjct: 477 RAFQMKQEMVEKGVSPDAVTYSSLIQGLC 505
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI G M+EA +V+ESM + + P Y +I G + G+ A N+Y++MI S
Sbjct: 620 LIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSG 679
Query: 208 DPPEELPFRILLKGLL 223
P + L+K L
Sbjct: 680 FVPHTVTVITLIKALF 695
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ FD +R + +P+ Y LI +R G +NEA ++ M + P TY I
Sbjct: 373 AMEFFDQMRIRGL-RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFI 431
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G +A+ + ++M++ P+ + + ++ G
Sbjct: 432 HGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFC 470
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y Y LI G++ + + + M + P+ TY +I + K G +A
Sbjct: 211 SPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFG 270
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + M P + + +++ GL
Sbjct: 271 LLKSMSSKGMQPNLISYNVIINGLC 295
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI A G +N+A+ + + M + PD+ TY+ +I G K +A +
Sbjct: 527 PDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTREAKRL 586
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+I P ++ + L++
Sbjct: 587 LFKLIYEESVPSDVTYDTLIENC 609
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 49/89 (55%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q PD + Y +I L + +++EA+ ++E + ++++ PD+ TYT +I K G +
Sbjct: 331 QMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRIS 390
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+++++M+ PP+ + + L+ L
Sbjct: 391 YVWDLFDEMLDRGQPPDVITYNNLIDALC 419
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +LI AL + G ++ A+ ++ M+ + + P+ T+T ++ G K G +A+
Sbjct: 406 PDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEF 465
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++D++ + +++ GL LL
Sbjct: 466 FQDLLTKGYCLNVRTYTVMINGLCKEGLL 494
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L +++R +E A+ +F+ I +++ PD Y LI L ++G+++ +++ M
Sbjct: 348 LCKIKRVDE---ALNLFEEIHQKNMV-PDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRG 403
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
PD TY +I K+G A+ ++ M P F ILL GL L++ +
Sbjct: 404 QPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNAL 463
Query: 233 KKDFEELFPEKHAYD 247
+ F++L + + +
Sbjct: 464 EF-FQDLLTKGYCLN 477
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ G++N A+ + M E++ PD TYT ++ K+G +A N
Sbjct: 230 SPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAEN 289
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M+K+ + + + L+ G
Sbjct: 290 VLAVMVKACVNLDVVVYSTLMDG 312
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 9/108 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y L+ AL + GK+ EA V M K + D Y+ ++ G+ +A
Sbjct: 265 NPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKR 324
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFPEKH 244
++ M + P+ + I++ GL K+K+ E LF E H
Sbjct: 325 VFYTMTQMGVTPDVHCYSIMINGL-------CKIKRVDEALNLFEEIH 365
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 6/106 (5%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ E +LAV + + D +Y L+ ++N A +V+ +M + + PD
Sbjct: 285 KEAENVLAVMV------KACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDV 338
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
Y+ +I G K +A+N++E++ + P+ + + L+ L
Sbjct: 339 HCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLC 384
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/97 (20%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++ Q +P+ Y + L+ L + G++ A++ ++ + + + +TYT +I
Sbjct: 427 AIALFNKMKDQ-AIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMI 485
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K+G +A+ + M + + + F I+++
Sbjct: 486 NGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRA 522
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 133 RKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
R + W +P+ IY +I L + ++EA ++ M + + PD TY+ ++ GF G
Sbjct: 188 RIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVG 247
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+++ +M+ P+ + IL+ L
Sbjct: 248 QLNRAIDLLNEMVLENINPDIYTYTILVDALC 279
>gi|302805861|ref|XP_002984681.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
gi|300147663|gb|EFJ14326.1| hypothetical protein SELMODRAFT_30598 [Selaginella moellendorffii]
Length = 651
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD IY L+ A + G+M++A+ V E++ L P +TYT ++ G++K G+ A+
Sbjct: 357 KPDIVIYNILVHAFCKAGRMDKALGVLENIEANRLLPTIETYTSILDGYVKGGNIQKALE 416
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+++ + + P + + LL GL
Sbjct: 417 VFDRIKTAGLRPGVVSYNSLLSGL 440
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 126 VKIFDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
K DI+ + D + P+ IY ++ AR G A +VWE M L PD Y +
Sbjct: 307 AKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPDIVIYNIL 366
Query: 184 IRGFLKDGSPADAMNIYEDM 203
+ F K G A+ + E++
Sbjct: 367 VHAFCKAGRMDKALGVLENI 386
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD I K +P Y L+ LA+ +M A + M + P + YT +
Sbjct: 414 ALEVFDRI-KTAGLRPGVVSYNSLLSGLAKARQMENARLMLNEMLANGVVPSERIYTALT 472
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G+ + G A +++ M K E L I+ G L S E+F +
Sbjct: 473 EGYARTGDVEKAFGVFQRMKK-----ENLAIDIVAYGALLKACCNSGAMHGAAEVFQQ 525
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI AL RTG+ A + M + L P+ TYT +I G ++G+ ADA+
Sbjct: 626 EPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIR 685
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+Y +M ++ PP+ L KG
Sbjct: 686 LYFEMHQNGIPPDYCTHNALFKG 708
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD + Y I A G ++A Q+ E M + ++PD+ TY +I G K G+ DA +
Sbjct: 486 QPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKD 545
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ M+ P+ + + L+ LL K
Sbjct: 546 LKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARK 580
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ + G + EA+ + +R+ L P TY +I G+ + G +A +
Sbjct: 382 PDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRL 441
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E+M++ P+ + IL+ G
Sbjct: 442 KEEMVEQGCFPDVCTYTILMNG 463
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D QPD Y LI A G ++EA ++ M + L P TYT +I + G+
Sbjct: 552 SDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLY 611
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK----VKKDFEELF-----PEKHA 245
A + M+ P E+ + +L+ H L R+ F E+ P K+
Sbjct: 612 SAYGWFRKMLDVGIEPNEITYNVLI-----HALCRTGRTLLAYHHFHEMLERGLAPNKYT 666
Query: 246 Y 246
Y
Sbjct: 667 Y 667
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 37/80 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L +TG + +A + M + L PD TYT +I + G ++A +
Sbjct: 522 PDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKL 581
Query: 200 YEDMIKSPDPPEELPFRILL 219
M+ P + + IL+
Sbjct: 582 LNGMVSDGLQPSVVTYTILI 601
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L ++ ++ A + MR L PD TY ++ G+ K G+ +A+ +
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWL 406
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
D+ ++ P L + L+ G
Sbjct: 407 LGDLRRAGLAPTVLTYNTLIDG 428
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
KR D E +++ +K L+ + ++L +Q A I + + + ++ D
Sbjct: 526 KRIDDATELIEQMVKEG-LQPNNITYNSILTHYCKQGNIKKAADILETM-TANGFEIDVV 583
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y LI L + G+ A+++ MR + + P + Y VI+ + + DA+N++ +M
Sbjct: 584 TYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREM 643
Query: 204 IKSPDPPEELPFRILLKGLL 223
+ +PP+ L ++I+ + L
Sbjct: 644 TEVGEPPDALTYKIVFRSLC 663
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD LI AL R ++ A+ + E M + PD T+T +++GF+++GS A+
Sbjct: 194 QPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALR 253
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M+++ P + +L+ G
Sbjct: 254 VKAKMMEAGCSPTGVTVNVLING 276
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI+AL+ ++ EA+ + + + L PD T+ +I K G P + +
Sbjct: 370 PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL 429
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+M S P+E+ + IL+ L
Sbjct: 430 FEEMKSSGCTPDEVTYNILIDHLC 453
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ Q+ + PD + Y +I L++ G+++EA + M PD+ T+ +I
Sbjct: 321 ALKVMDLML-QEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 379
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELF 240
+A+++ ++ P+ F IL+ L PH +R FEE+
Sbjct: 380 VALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRL-----FEEM- 433
Query: 241 PEKHAYDPPEEI 252
K + P+E+
Sbjct: 434 --KSSGCTPDEV 443
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 40/87 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D ++PD Y + L + G ++ A++V + M +E PD TY VI K+G +
Sbjct: 296 DGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGL 222
A I M+ P+ F L+ L
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVAL 382
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L + R EE A ++FD + Q + A + LI L + ++++A ++ E M
Sbjct: 483 IIDALCKKMRIEE---AEEVFDQMDAQGISRS-AVTFNTLIDGLCKAKRIDDATELIEQM 538
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KE L P++ TY ++ + K G+ A +I E M + + + + L+ GL
Sbjct: 539 VKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLC 593
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y + LI AL + G + ++++E M+ PD TY +I G +A++
Sbjct: 404 SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALD 463
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P + + ++ L
Sbjct: 464 LLNEMESNGCPRSTVTYNTIIDALC 488
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 91 EKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
+K ++T ++D+V LI L + T +A+K+ +R + +P Y
Sbjct: 564 KKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIK-GIRPTPKAYNP 622
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYEDMIKS 206
+I +L R + +A+ ++ M + PD+ TY V R + G P +A + +M+
Sbjct: 623 VIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNK 682
Query: 207 PDPPEELPFRILLKGLL 223
PE FR+L +GLL
Sbjct: 683 GFMPEFSSFRMLAEGLL 699
>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 556
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 2/106 (1%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+LI+ R T A ++ ++ K PD Y Y L+ L G M EA ++++S+
Sbjct: 407 TILIDAFARLNHTEKACEMHSLMEKSGLV-PDVYTYSVLLHGLCVHGNMKEASKLFKSLG 465
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
+ L P+S Y +I G+ K+GS A+ + +M++S P F
Sbjct: 466 EMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPNVASF 511
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ IY LI + G + A ++ M + L P+ TY+ ++ GF K G +
Sbjct: 190 SPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQ 249
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+YE+M +S P + L+
Sbjct: 250 MYENMKRSGIVPNAYAYNCLIS 271
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y L+ + G E Q++E+M++ + P++ Y +I + DG A +
Sbjct: 226 PNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKV 285
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + + + IL+ GL
Sbjct: 286 FAEMREKGIACGVMTYNILIGGLC 309
Score = 43.5 bits (101), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F+ + K P Y LI ++ + A+ + + M + + P TYT +I
Sbjct: 352 AVRLFNQL-KSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEEL 239
F + A ++ M KS P+ + +LL GL H ++ SK+ K E+
Sbjct: 411 DAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEM 467
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ P+AY Y LI G +++A +V+ MR++ + TY +I G +
Sbjct: 255 KRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKF 314
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ + + K P + + IL+ G
Sbjct: 315 GEAVKLVHKVNKVGLSPNIVTYNILINGFC 344
Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + K P+ Y LI KM+ A++++ ++ L P TY +I
Sbjct: 317 AVKLVHKVNKVGL-SPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLI 375
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ K + A A+++ ++M + P ++ + IL+
Sbjct: 376 AGYSKVENLAGALDLVKEMEERCIAPSKVTYTILI 410
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
D++++ + P Y LI A AR +A ++ M K L PD TY+ ++ G
Sbjct: 388 LDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHG 447
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ +A +++ + + P + + ++ G
Sbjct: 448 LCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHG 482
>gi|297850744|ref|XP_002893253.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
gi|297339095|gb|EFH69512.1| hypothetical protein ARALYDRAFT_313173 [Arabidopsis lyrata subsp.
lyrata]
Length = 1147
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 52/97 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + + +D + PD IY I L + G + +A++ + + L PD TYT VI
Sbjct: 534 AFRLHEEMVAEDHHAPDLTIYNVRIDGLCKVGNLEKAIEFQRKIFRVGLVPDHVTYTTVI 593
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
RG+L+ G A ++Y++M+ P + + +L+ G
Sbjct: 594 RGYLEKGRFKMARDLYDEMLSKRLSPSVITYFVLIHG 630
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD ++ + P Y LI L +G + A ++ E M + ++PD TYT +++GF
Sbjct: 432 LFDDLKAGN-INPSIVTYNTLIDGLCESGNLEGAQRLKEEMTSQLIYPDVITYTTLLKGF 490
Query: 188 LKDGSPADAMNIYEDMIKSPDPPE 211
+K+G+ + A IY++M++ P+
Sbjct: 491 VKNGNLSMATEIYDEMLRKGIKPD 514
Score = 40.0 bits (92), Expect = 0.99, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + G ++ A ++++ M ++ + PD YT G L+ G A +
Sbjct: 478 PDVITYTTLLKGFVKNGNLSMATEIYDEMLRKGIKPDGYAYTTRTVGELRLGDSEKAFRL 537
Query: 200 YEDMI-KSPDPPEELPFRILLKGL 222
+E+M+ + P+ + + + GL
Sbjct: 538 HEEMVAEDHHAPDLTIYNVRIDGL 561
Score = 37.7 bits (86), Expect = 5.2, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ + K EA +++ ++ ++ P TY +I G + G+ A +
Sbjct: 408 PDVVSYNTLMHGYIKMRKFVEASLLFDDLKAGNINPSIVTYNTLIDGLCESGNLEGAQRL 467
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAY 246
E+M P+ + + LLKG + + L S + ++E+ P+ +AY
Sbjct: 468 KEEMTSQLIYPDVITYTTLLKGFVKNGNL-SMATEIYDEMLRKGIKPDGYAY 518
Score = 37.0 bits (84), Expect = 8.8, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + ++ + + G + ++W M++ ++ TY +I GF K G +A
Sbjct: 272 PTVITFNTMLDSCFKAGDLERVDKIWLEMKRRNIEFSEVTYNILINGFSKSGKMEEARRF 331
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ DM +S P F L++G
Sbjct: 332 HGDMQRSGFPVTPYSFNPLIEG 353
>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 894
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+I+ ++ + + Y +LI GK++EA++++ M+++ FPD TYT ++
Sbjct: 244 AYKVFEIMPQEGCLRNEVS-YTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLV 302
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
F + G +A+ +E+M+++ P + +L+
Sbjct: 303 AAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLI 337
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 47/88 (53%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D + PD + I L + GK+ +A QV+ES++++ + YT +I G+ K +
Sbjct: 463 KDGFVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFS 522
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA +++ M+ P + F +LL GL
Sbjct: 523 DAHLLFKRMLFEGCFPNSITFNVLLDGL 550
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 42/88 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+D PD Y L+ A GK EA++ +E M + + P+ TYT +I F K G
Sbjct: 287 KEDGCFPDVPTYTVLVAAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKM 346
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ M + M++ +PF L+ G
Sbjct: 347 DEGMEMLSTMLEKGLVSSVVPFNALIDG 374
Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ LI + G M +A+ V +SM+ + P+S+TY E+I GF + S AM + M
Sbjct: 368 FNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMY 427
Query: 205 KSPDPPEELPFRILLKGL 222
++ P + + L+ GL
Sbjct: 428 ENKLSPNLVTYNTLIHGL 445
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + K+ + + ++Y LI + K ++A +++ M E FP+S T+ ++
Sbjct: 489 AHQVFESL-KEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLL 547
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K+G DAM++ + M K P + IL++ +L
Sbjct: 548 DGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEIL 586
Score = 40.0 bits (92), Expect = 1.1, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D++ Y LI+ + ++ +A +V+E M +E + +YT +I GF + G +A+ ++
Sbjct: 224 DSFTYTSLILGYCKIHELGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELF 283
Query: 201 EDMIKS---PDPP 210
M + PD P
Sbjct: 284 FQMKEDGCFPDVP 296
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ Y +LI R M+ AM + M + L P+ TY +I G K A +
Sbjct: 398 PNSRTYNELICGFCRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRL 457
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHA 245
+ MIK P++ F + L + + + FE L EKHA
Sbjct: 458 HHLMIKDGFVPDQRTFCAFIDCLCKMGKVE-QAHQVFESL-KEKHA 501
Score = 38.9 bits (89), Expect = 2.0, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + E LA ++F+ + K+ P I+ L+ + + G EA+++ +SM + +
Sbjct: 751 LCKVEHLSLAFRLFNHM-KESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLA 809
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++Y ++ G + G+ A I+ ++ +E+ +++LL GL+
Sbjct: 810 HLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLV 857
Score = 37.4 bits (85), Expect = 6.7, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ + L+ L + GK+ +AM + + M K D P TYT +I L++ S D N+
Sbjct: 538 PNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRE-SDFDRANM 596
Query: 200 YED-MIKSPDPPEELPFRILLKG 221
+ D MI S P + + +K
Sbjct: 597 FLDQMISSGCQPNVVTYTAFIKA 619
>gi|297792071|ref|XP_002863920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309755|gb|EFH40179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 498
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+++R+Q WY+P+ IY LI+ L + + +A ++++ M E + + YT ++
Sbjct: 136 ALQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALL 195
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ + G A + E M S + P+ + IL+K L
Sbjct: 196 SAYSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 235
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 127 KIFDIIRKQD-----WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
K+ D IR +D + + ++ LI + G+++E ++ MRK DL PDS +Y
Sbjct: 187 KMGDAIRVRDEMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYC 246
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ G+ +DG + A N+ + M++ P + + LLKGL
Sbjct: 247 TLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGL 287
Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+RK D +PD+Y Y L+ R G ++A V + M ++ + P TY +++G + G
Sbjct: 233 MRKLD-LKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFG 291
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ ++ M++ P E+ + LL GL
Sbjct: 292 DYKDALRLWHLMLQRGVTPNEVGYCTLLDGLF 323
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L ++G ++ A ++++ + + L P+ TY +I G+ K GSP +A+++
Sbjct: 625 PNITTYNALLNGLCKSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDL 684
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M+K P + + L+ G
Sbjct: 685 RGKMLKEGISPSIITYSSLINGF 707
Score = 45.4 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y + L ++GK+N+A + + + PD+ TY +I GF G +A N+
Sbjct: 555 PNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNL 614
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
++M+ P + LL GL L + ++ F++L
Sbjct: 615 RDEMVNKGLVPNITTYNALLNGLCKSGYL-DRARRLFDKL 653
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI ++G EA+ + M KE + P TY+ +I GF K +AM +
Sbjct: 660 PNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVEEAMKL 719
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+M S F L++G + H
Sbjct: 720 LNEMKASNVDQTIATFSKLVEGCIQH 745
Score = 41.2 bits (95), Expect = 0.39, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + Y LI + G +NEA + + M + L P+ TY ++ G K G A
Sbjct: 588 FTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRAR 647
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+++ + P + + IL+ G
Sbjct: 648 RLFDKLHLKGLIPNVVTYNILIDG 671
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 59/105 (56%), Gaps = 1/105 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R E ++++ +R++ Y+ D + Y L+ ALA+ G +++A QV+E M+++ PD+
Sbjct: 198 RSREVSKGFQVYEEMRRKG-YKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDA 256
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT +IR K G + ++ +++M+ + F +++ L
Sbjct: 257 YTYTILIRMSGKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL 301
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+++ +PD Y LI L + G ++EA +++ M+++ PD TY+ +I
Sbjct: 482 ASELFEVMEASSC-KPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILI 540
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K A +++++MI P + + ILL L
Sbjct: 541 ECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCL 578
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 1/109 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V L + ++ +FD + K + PD + Y +I + R G +++A +++E M
Sbjct: 434 VFSALGKLKQVSFISNLFDKM-KTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEAS 492
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
PD TY +I K G +A ++++M + P+ + IL++
Sbjct: 493 SCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIE 541
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ Y PD + Y LI ++ K+ A +++ M E P+ TY ++ + G
Sbjct: 525 QEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKT 584
Query: 194 ADAMNIYEDMIKSPDPPEELPFRIL 218
+A +YE M + P+ + + IL
Sbjct: 585 EEAHKLYETMKQQGLIPDSITYSIL 609
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
Y YK ++ A R+ ++++ QV+E MR++ D Y ++ K G A ++
Sbjct: 185 SGYTYKCIVQAHLRSREVSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVF 244
Query: 201 EDMIKSPDPPEELPFRILLK 220
EDM + P+ + IL++
Sbjct: 245 EDMKQKHCVPDAYTYTILIR 264
>gi|359495078|ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like
[Vitis vinifera]
Length = 1294
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
+ +E+ E LA+++F+ ++ + + IY L+ A+ RTG++ +A+ +++ ++ +
Sbjct: 979 VMIEKGERLKLALEVFEHLKAKGYCSIS--IYNILMEAIHRTGEVKKALSLFDDIKDSNF 1036
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PDS TY+ I F++ G +A Y +I+ P +R L+KGL
Sbjct: 1037 KPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGL 1085
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 7/120 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P ++Y ++ L +TG ++ AM V+E +++ L +S TY +++G K G + +
Sbjct: 758 KPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGLCKAGRIDEVLE 817
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDPPEEIFGKL 256
++E+M K P+ + + L+ L ++V + F ELF E + Y I+G L
Sbjct: 818 VWEEMRKDKVEPDVMAYTTLVAALCNG----NRVGEGF-ELFKEMKQKKYLIDRAIYGSL 872
Score = 47.0 bits (110), Expect = 0.007, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ +++ K+D ++ Y L+ L + G+++E ++VWE MRK+ + PD YT +
Sbjct: 779 LAMSVYEDF-KEDGLVEESVTYMILVKGLCKAGRIDEVLEVWEEMRKDKVEPDVMAYTTL 837
Query: 184 IRGFLKDGSPADAMNIYEDM 203
+ + ++++M
Sbjct: 838 VAALCNGNRVGEGFELFKEM 857
Score = 37.7 bits (86), Expect = 5.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
V+E M+K + P Y ++ G +K G AM++YED + E + + IL+KGL
Sbjct: 748 VYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDFKEDGLVEESVTYMILVKGL 806
Score = 37.0 bits (84), Expect = 8.6, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 2/138 (1%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+L ++ V V L+ Q + ++ K F KQ Y+ + Y L R+ + A
Sbjct: 652 KLRRVTPVLVAEVLKVQTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAAD 711
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
QV E M + P + + +IR + +YE M K P + ++ GL
Sbjct: 712 QVPELMNMQGKPPSEKQFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGL 771
Query: 223 LP--HPLLRSKVKKDFEE 238
+ H L V +DF+E
Sbjct: 772 VKTGHLDLAMSVYEDFKE 789
>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1151
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L++ GK+ EAM V+ + + L PD TYT +I K+G A +
Sbjct: 615 PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFEL 674
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++DM K P + + L+ GL
Sbjct: 675 HDDMCKKGINPNIVTYNALINGL 697
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L++ R EE A+KI +++ Q PD + Y +II + GKM E M
Sbjct: 483 IVKGLVKEGRFEE---AIKILGVMKDQG-LSPDVFCYNTVIIGFCKAGKMEEGKSYLVEM 538
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ L P+ TY I G+ + G A + +M+ S P ++ L+ G
Sbjct: 539 IAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDG 591
Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L R G ++EA+++ SM + L PD+ Y +I GF + + ++
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF---EELFPEK 243
++M P+ + + L+ G + +S + F EE+F K
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVK----QSDIGGAFQVKEEMFARK 367
Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y +LI A R GK+ E V M ++ P+ TY+ VI G + G +A+ +
Sbjct: 230 PDVYTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALEL 289
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M P+ + L+ G
Sbjct: 290 KRSMANKGLLPDNYIYATLIDGF 312
Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD YIY LI R + E + + M L PD YT +I GF+K A +
Sbjct: 300 PDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQV 359
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M + L+ GL
Sbjct: 360 KEEMFARKIKLNTFTYYALIHGL 382
Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 46/84 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI G + EA Q++ M+K ++ P+ TYT ++ G+ + G ++ ++
Sbjct: 824 PNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSL 883
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+++M+ P++L + +++ L
Sbjct: 884 FDEMVARGIKPDDLAWSVMVDAHL 907
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ I DLI + G +A + M + + PD QT++ +I G K+G +AM +
Sbjct: 580 PNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGV 639
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +++ P+ + L+ L
Sbjct: 640 FSELLDKGLVPDVFTYTSLISNL 662
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 130 DIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
D+ R + +Q P+ IY ++ L + G+ EA+++ M+ + L PD Y
Sbjct: 457 DLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYN 516
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
VI GF K G + + +MI P + + G
Sbjct: 517 TVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHG 556
Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+++Y LI + G +A+ ++ M +E + + + +I GF K G +A +
Sbjct: 755 PDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLIEAYQL 813
Query: 200 YEDMIKSPDPPEELPFRILLK 220
EDM+ + P + + IL++
Sbjct: 814 VEDMVDNHITPNHVTYTILIE 834
Score = 40.4 bits (93), Expect = 0.66, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G++ +A ++++ + ++ L +S TY+ +I G+ K + +A +
Sbjct: 685 PNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQL 744
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M PP+ + L+ G
Sbjct: 745 FHGMKLVGVPPDSFVYCALIDG 766
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 38/84 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y I R G+M A + + M + P+ T++I G+ KDG+ A
Sbjct: 544 KPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFA 603
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M+ P+ +L+ GL
Sbjct: 604 KFRCMLDQGVLPDVQTHSVLIHGL 627
>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+ + K+ PD+Y Y LI ALA+ GK +EA+ ++ M E TYT +I
Sbjct: 396 AEKLFEEMVKKGC-PPDSYCYNALIDALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMI 454
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G ++ +A+ +++ MI P FR L GL
Sbjct: 455 NGLFREHKNEEALKMWDMMIDKGITPTAAAFRALSIGLC 493
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 48/89 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y ++ + ++G+++EAM+ E R + ++ Y+ +I G K G
Sbjct: 334 KKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRV 393
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A ++E+M+K PP+ + L+ L
Sbjct: 394 HEAEKLFEEMVKKGCPPDSYCYNALIDAL 422
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q + + IY LI + A+ G M EAM ++E M+KE L PD TY V+ K G
Sbjct: 300 QKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLD 359
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAYD 247
+AM E + + + L+ GL + + +K FEE+ P+ + Y+
Sbjct: 360 EAMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVH-EAEKLFEEMVKKGCPPDSYCYN 416
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +P + Y L+ L + + A +V E M + PD TY +I+G+ + G
Sbjct: 159 KENGVEPSLFTYNFLLNGLVNSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKT 218
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A + DM P+++ + L++
Sbjct: 219 QKAFEKFRDMELRNVAPDKITYMTLIQAC 247
>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ I + W D Y++ L++A ++ GK+++A ++ E+M ++++ + +T+ +I
Sbjct: 120 ALDVFNEIHDRGWV--DEYVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLI 177
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF+K+ A+++++ M KS P+ + +++ GL
Sbjct: 178 YGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLC 216
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 4/119 (3%)
Query: 108 DIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
DIVA L L + +E A+K+F I Q Y PD Y LI L +T ++ EA +
Sbjct: 463 DIVAYSACLDGLIKIQEVDQALKLFQDICAQG-YCPDVIAYNILIKGLCKTQRIAEAQNL 521
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M ++ L P + TY +I G K +AM MI+ P + + L+ GL
Sbjct: 522 LHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLC 580
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI L +T + EAM M +++ P+ TY+ +I G G P DA+ +
Sbjct: 532 PSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPDDALVL 591
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M + P + + + GL
Sbjct: 592 WNEMGRKGCTPSSIAYMAFIHGL 614
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
EL + + + A K F + ++ +QPD Y + L + ++++A+++++ + +
Sbjct: 438 ELCKHGKEVEACK-FLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYC 496
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
PD Y +I+G K A+A N+ +M + P + + L+ GL
Sbjct: 497 PDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLC 545
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L G+ ++A+ +W M ++ P S Y I G G P +A+
Sbjct: 566 EPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALV 625
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+M + P+ + LL L
Sbjct: 626 YLREMEEREMKPDTYVYVGLLNAFL 650
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L+ L + GK EA + M +E PD Y+ + G +K A+ +++D+
Sbjct: 435 LVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQG 494
Query: 208 DPPEELPFRILLKGLL 223
P+ + + IL+KGL
Sbjct: 495 YCPDVIAYNILIKGLC 510
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + Y I L+ G+ NEA+ M + ++ PD+ Y ++ FL D + A I
Sbjct: 602 PSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPDTYVYVGLLNAFLVDSNQPLAFEI 661
Query: 200 YEDMIKSPDPPE 211
++M+ P+
Sbjct: 662 LQEMVDKGKFPD 673
>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Cucumis sativus]
Length = 831
Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/83 (36%), Positives = 44/83 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI A AR G ++EAM++ M K+ + PD TYT ++ GF K G AM
Sbjct: 357 FAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGKDDYAM 416
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
++E+M + P F L+K
Sbjct: 417 KVFEEMRVAGCQPNICTFNALIK 439
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + K + PD Y L+ ++ + EAM+V + M P TY +I
Sbjct: 310 AAEVFEEM-KAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASGFAPSIVTYNSLI 368
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +DG +AM + M+K P+ + LL G
Sbjct: 369 SAYARDGLLDEAMELKSQMVKKGIKPDVFTYTTLLSGF 406
Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 130 DIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
DI+R+ +PD + +I A R G+M EA +++ M+ L PD TY I +
Sbjct: 697 DILREIIAKGMKPDIISFNTVIFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY 756
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
D +A+++ + MIK+ P + + L+
Sbjct: 757 ASDSMFIEAIDVVKYMIKNECKPNQNTYNSLI 788
Score = 44.7 bits (104), Expect = 0.038, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 81/191 (42%), Gaps = 11/191 (5%)
Query: 75 EALFVILGLKRFKDDEEKLQKFI----KTHVLRLLKMDIVAVLIE-LERQEETILAVKIF 129
+ L +I GL +K +E L F + +L +VAV+I L ++ A +
Sbjct: 149 DILGIIKGLVFYKKNELALCVFYFVRNREDFASILSNSVVAVIISVLGKEGRASFAASLL 208
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+R D D Y Y LI A A G+ EA+ V++ + +E P TY ++ + K
Sbjct: 209 HDLR-NDGVHIDIYAYTSLITAYASNGRYREAVMVFKKLEEEGCRPTLITYNVILNVYGK 267
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKH 244
G P + D +KS +L L L + + FEE+ P+K
Sbjct: 268 MGMPWSKIAGLVDSMKSSGVAPDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKV 327
Query: 245 AYDPPEEIFGK 255
Y+ +++GK
Sbjct: 328 TYNALLDVYGK 338
Score = 44.3 bits (103), Expect = 0.049, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI + R EA +V+E M+ PD TY ++ + K P +AM +
Sbjct: 289 PDLYTYNTLISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEV 348
Query: 200 YEDMIKSPDPPEELPFRILLK-----GLLPHPL-LRSKVKK 234
++M S P + + L+ GLL + L+S++ K
Sbjct: 349 LKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVK 389
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ +TGK + AM+V+E MR P+ T+ +I+ G+ + M
Sbjct: 393 KPDVFTYTTLLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIKMHGNRGNFVEMMK 452
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++E++ P+ + + LL + + S+V F+E+ ++ + P + F L
Sbjct: 453 VFEEIKICECVPDIVTWNTLL-AVFGQNGMDSEVSGVFKEM--KRAGFVPERDTFNTL 507
Score = 37.0 bits (84), Expect = 8.4, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L E+ + A+K+F+ +R QP+ + LI G E M+V+E ++
Sbjct: 402 LLSGFEKTGKDDYAMKVFEEMRVAGC-QPNICTFNALIKMHGNRGNFVEMMKVFEEIKIC 460
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ PD T+ ++ F ++G ++ ++++M ++ PE F L+
Sbjct: 461 ECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLI 508
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K F ++ Q +PD Y LI L + G + EA ++ M L PD T+T +
Sbjct: 371 LALKNFQMMLAQG-VRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTL 429
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G KDG A+ I M++ +++ F L+ GL
Sbjct: 430 IDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLC 469
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 45/92 (48%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ + + PD + + LI L + G+++E +++ M L P+ T+T +I G K G
Sbjct: 308 VMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGG 367
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ ++ M+ P+ + + L+ GL
Sbjct: 368 KVDLALKNFQMMLAQGVRPDLVTYNALINGLC 399
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + GK++ A++ ++ M + + PD TY +I G K G +A +
Sbjct: 351 PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRL 410
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M S P+++ F L+ G
Sbjct: 411 VNEMTASGLKPDKITFTTLIDGCC 434
Score = 43.5 bits (101), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD I K+ +P + LI ++G + E ++ M E + PD T++ +I G
Sbjct: 270 VFDEIPKRGL-RPTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGL 328
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
K+G + ++++M P + F L+ G
Sbjct: 329 CKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 40/81 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI + G M A+++ M +E + D +T +I G ++G DA
Sbjct: 420 KPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGR 479
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ DM+ + P++ + +++
Sbjct: 480 MLTDMLSAGFKPDDPTYTMVI 500
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + LI L R G++++A ++ M PD TYT VI F K G +
Sbjct: 457 DDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLL 516
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
++M P + + L+ GL
Sbjct: 517 KEMQSDGHVPGVVTYNALMNGLC 539
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD Y +I + G + ++ + M+ + P TY ++ G K G +A
Sbjct: 489 FKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAK 548
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ + M+ P ++ + ILL G H
Sbjct: 549 MLLDAMLNVGVAPNDITYNILLDGHSKH 576
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 2/97 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIF+ + ++ PD Y +I + G M EA+ SMRK PD TYT ++
Sbjct: 380 ARKIFEFMEEKAC--PDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLV 437
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ K G + ++ + DM+K P + L+ G
Sbjct: 438 DGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICG 474
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD +IY LI R+ K+++A +++E M +E PD Y +I+G+ K G +A+
Sbjct: 358 QPDKFIYTTLIDGFVRSDKLSDARKIFEFM-EEKACPDIVAYNVMIKGYCKFGMMKEAVT 416
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
M K+ P+E + L+ G
Sbjct: 417 CMSSMRKAGCIPDEFTYTTLVDG 439
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 5/114 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD LI L +G++N+A+ V E M + + PD+ Y +I G K + A
Sbjct: 287 HTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAK 346
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF----EELFPEKHAYD 247
N+ E+M++ P++ + L+ G + L S +K F E+ P+ AY+
Sbjct: 347 NLLEEMLEQKVQPDKFIYTTLIDGFVRSDKL-SDARKIFEFMEEKACPDIVAYN 399
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA IY LI L + ++ A + E M ++ + PD YT +I GF++ +DA I
Sbjct: 324 PDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKI 383
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+E M + P+ + + +++KG +++ V
Sbjct: 384 FEFM-EEKACPDIVAYNVMIKGYCKFGMMKEAV 415
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I L R G + + + MR L P+ Q Y VI K S + A ++
Sbjct: 149 PTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDM 208
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHP-------LLRSKVKKDFEELFPEKHAYDP 248
M+KS P+ + F ++ G LLR +++ E P + +Y P
Sbjct: 209 LNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLE---PNQLSYTP 261
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+ D+++++ +P+ + Y LI G A ++ M+ E LFP+ YT +I
Sbjct: 453 LCDMMKRR--CKPNIFTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSL 510
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP--HPLLRSK 231
K A +E M+ + PP + L+ GL+ H ++ S
Sbjct: 511 FKKDKVIQAAAYFEHMLLNHCPPNDATVHYLVNGLVNCRHGMVNSN 556
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ IY +I AL + ++A + M K PD T+ +I GF ++G +A+
Sbjct: 183 SPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALK 242
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + I+ P +L + L+ G
Sbjct: 243 LLREAIRRGLEPNQLSYTPLIHGFC 267
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + +I R G + EA+++ + L P+ +YT +I GF G A
Sbjct: 217 FNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVAS 276
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M+ P+ + L+ GL+
Sbjct: 277 DLLVEMMGRGHTPDMITLGALIHGLV 302
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 130 DIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D++R+ D QP+ +Y +I + + +N+A ++ M + + P+ TY+ +I GF
Sbjct: 183 DLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 242
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G DA++++ MI P+ F IL+ G
Sbjct: 243 FTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFC 278
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
Q PD Y LI + K++EAM +++ M + + PD TY +I G K G
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ A+ + ++M PP+ + + +L L
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALC 418
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + ++++A+ + ++ + + P+ TYT +I G K G DA NI
Sbjct: 405 PDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNI 464
Query: 200 YEDMI 204
+ED++
Sbjct: 465 FEDLL 469
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y LI G++ +A+ ++ M E++ PD T+ ++ GF KDG +
Sbjct: 229 SPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKT 288
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ M+K P + + L+ G
Sbjct: 289 VFAMMMKQGIKPNVVTYCSLMDG 311
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+F ++ KQ +P+ Y L+ ++N+A + +M + + PD Q+Y +I GF
Sbjct: 289 VFAMMMKQGI-KPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGF 347
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K +AMN++++M P+ + + L+ GL
Sbjct: 348 CKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC 383
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L + + A+ + ++ Q +P+ Y Y LI L + G++ +A ++E +
Sbjct: 412 SILDALCKNHQVDKAIALLTKLKDQGI-RPNMYTYTILIDGLCKGGRLEDAHNIFEDLLV 470
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ TYT +I GF G +A+ + M + P+ + + I+++ L
Sbjct: 471 KGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLF 523
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y + L+ + GKM E V+ M K+ + P+ TY ++ G+ A +
Sbjct: 264 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKS 323
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFPEKH 244
I M + P+ + IL+ G K+KK E LF E H
Sbjct: 324 ILYTMSQRGVNPDIQSYNILIDGF-------CKIKKVDEAMNLFKEMH 364
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 38/84 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + GK++ A+++ + M + PD TY+ ++ K+ A+ +
Sbjct: 370 PDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIAL 429
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ P + IL+ GL
Sbjct: 430 LTKLKDQGIRPNMYTYTILIDGLC 453
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ D PD Y + LI A A G +++AM ++ MR + P TY VI
Sbjct: 383 LFDLMLG-DGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAAL 441
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
+ G DAM + MI P++ + L++G H LL++K
Sbjct: 442 CRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAK 486
Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +LI + TG+ EA++V++ MR++ + PD ++ K G +A ++
Sbjct: 289 PDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDV 348
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M P+ + I+L G
Sbjct: 349 FDTMAMKGQNPDVFSYTIMLNG 370
Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 105 LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+++DIV +++ L + + A IFD+ + PDA +Y L+ GKM +A
Sbjct: 497 MRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLH-PDAVVYNMLMDGYCLVGKMEKA 555
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++V+++M + P+ Y ++ G+ K G + ++++ +M++ P + + I++ G
Sbjct: 556 LRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 615
Query: 222 LL 223
L
Sbjct: 616 LF 617
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++F +R+Q PD L+ +L + GK+ EA V+++M + PD +YT ++
Sbjct: 310 AVRVFKEMRRQS-ILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ G D ++++ M+ P+ F +L+K
Sbjct: 369 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKA 405
Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ IF+ +R +P Y +I AL R GKM++AM+ + M + + PD Y +I
Sbjct: 415 AMIIFNEMRDHG-VKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLI 473
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
+GF GS A + +++ +
Sbjct: 474 QGFCTHGSLLKAKELISEIMNN 495
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF--PDSQTYTEVIRGFLKDGSPADAM 197
PD + Y L+ +L GK +A + M + PD Y VI GF K+G A
Sbjct: 182 PDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKAC 241
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+++++M++ PP+ + + ++ L
Sbjct: 242 DLFKEMVQRGIPPDLVTYSSVVHAL 266
Score = 41.6 bits (96), Expect = 0.33, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + M++A M + + PD+ TY +I G+ G +A+ +
Sbjct: 254 PDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRV 313
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M + P+ + L+ L
Sbjct: 314 FKEMRRQSILPDVVALNTLMGSL 336
>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
Length = 316
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +PD +++ I A + G+++EA + M++ PD TYT VI G K G
Sbjct: 73 QNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLD 132
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DAM+ + MI P + F L+ G
Sbjct: 133 DAMSRFCQMIDDGLSPNIITFTTLIHG 159
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q + PD Y +I L + G++++AM + M + L P+ T+T +I GF G
Sbjct: 107 QQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKW 166
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
A ++ +M+ PP F ++
Sbjct: 167 EKAEELFYEMMDRGIPPNVNTFNSMI 192
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + +I L + GK+ EA ++++ M + P+ +Y +I G+ G + M +
Sbjct: 183 PNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKL 242
Query: 200 YEDMIKSPDPPEELPFRILLKGLLP 224
+DM+ P + LL G+L
Sbjct: 243 LDDMLLIGLKPNAVNLNTLLDGMLS 267
>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
Length = 481
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L L ++ + A K+ DI+ + + P++ +LI L R G++ A +V ++M
Sbjct: 28 ILHNLCKKGSLMEATKLIDIMSRVNQI-PNSTCSTNLIRGLVRIGRIERASRVLKTMVMS 86
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
L PD TY ++ GF K A+++ EDM S PP+ + + +++ L
Sbjct: 87 GLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSL 137
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L+ AL + G ++EA+QV+ + + P TY VI G + G +A+
Sbjct: 299 SPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGYMDEALK 358
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y MI+ P+ + R L+ G
Sbjct: 359 LYNQMIEKGIAPDGITHRSLVWGFC 383
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F ++ + P Y +I L R G M+EA++++ M ++ + PD T+ ++
Sbjct: 321 ALQVFVLLSDSNC-SPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLV 379
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF DA+ I +M K +R+++ GL + R + E+
Sbjct: 380 WGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNK--RVDIAIQVLEMMISGR 437
Query: 245 AYDPPEEIFGKL 256
Y P EEI+ L
Sbjct: 438 -YKPDEEIYSTL 448
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I++I+ +P+A Y L+ +L G +E ++ M+K P TY +I
Sbjct: 217 ALIIYNILSHG--MEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILI 274
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G K G A+N + M+ P+ + + LL L ++
Sbjct: 275 NGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMV 318
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I K+ + P Y LI L + G + A+ + M E+ PD TY ++ K+G
Sbjct: 257 IMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEG 316
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A+ ++ + S P + + ++ GL
Sbjct: 317 MVDEALQVFVLLSDSNCSPGLITYNTVIDGL 347
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L + G + EA ++ + M + + P+S T +IRG ++ G A + + M+ S P+
Sbjct: 32 LCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLKTMVMSGLVPD 91
Query: 212 ELPFRILLKGLLPHPLLRSKV 232
+ + +++ G LRS +
Sbjct: 92 VITYNMMVGGFCKRRQLRSAI 112
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 111 AVLIELE-RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+LIEL + T+ A+++ + + + Y PD Y L+ ++ GK +A + ++
Sbjct: 166 TILIELVWKHCGTVRALEVLEDMAIEGCY-PDLVTYNSLVNFASKEGKYEDAALIIYNIL 224
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
+ P++ TY ++ G + I M K+ PP + + IL+ GL L+
Sbjct: 225 SHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVE 284
Query: 230 SKVKKDFEELFPEKHAYD 247
+ F ++ E + D
Sbjct: 285 RAINF-FVQMVSENCSPD 301
>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
Length = 651
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+ +++ ++ P+ + + LI L + ++ EA Q+ E M P+ TY+ VI
Sbjct: 203 AYKLLEVMIEKGCV-PNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYSTVI 261
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G DA +++ M + PP + IL+ GL
Sbjct: 262 NGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLC 300
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + ++ +A ++ L+ L G++ EA++ + +M K D PD TYT ++ K G
Sbjct: 36 KSNGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKF 94
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A + +MI P+ + F L+ GL
Sbjct: 95 DEAQGMLREMIARGCAPDTVTFSTLIDGLC 124
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ AL + GK +EA + M PD+ T++ +I G K GS A +
Sbjct: 76 PDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRV 135
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
ED+I+ + F +++ L
Sbjct: 136 LEDVIQRGMGNSDAAFETIIQRLC 159
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L +Q + A ++F ++ +++ P+ + LI L + ++ EA Q++ MR+
Sbjct: 260 VINGLCKQGQVDDAYELFQLMERRNC-PPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 318
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP-DPPEELPFRILLKG 221
PD TY +I G K +A +++ + +S + + L G
Sbjct: 319 GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 369
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + +PD Y ++ L G++ +A +V++ M KE P TY +I+ K G+
Sbjct: 266 KDESCKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNV 325
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA+ +++ M+ P + + +L++GL
Sbjct: 326 EDAVTVFDGMLVKGYVPNVVTYTVLIRGLC 355
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD + + Y P+ Y LI L GK++ +++ E M+ P QTY +I
Sbjct: 328 AVTVFDGMLVKG-YVPNVVTYTVLIRGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLI 386
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGL 222
R ++G ++++E M K + P + + I++ +
Sbjct: 387 RYLFEEGEMEKGLDLFEKMSKGEECLPNQDTYNIIISAM 425
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD + K+ P Y LI + + G + +A+ V++ M + P+ TYT +I
Sbjct: 293 ARKVFDEMAKEGC-APSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYTVLI 351
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR------SKVKKDFEE 238
RG G + + E M P + +L++ L + K+ K EE
Sbjct: 352 RGLCHAGKIDRGLKLLERMKNGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSKG-EE 410
Query: 239 LFPEKHAYD 247
P + Y+
Sbjct: 411 CLPNQDTYN 419
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LAV++F + + D ++ L+ AL+++ +A + ++ ++ PD TY +
Sbjct: 147 LAVRLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRAL-EQRFTPDVVTYNTL 205
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
G+ + + A+++ M++S P + + I+LKG LR
Sbjct: 206 ADGWCRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLR 251
>gi|449525698|ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Cucumis sativus]
Length = 494
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 68 GKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE-LERQEETILAV 126
G K EA ++ G+ R D+E L K + +V R+++ + +L E L ++++ + +
Sbjct: 53 GVKTDRSEAEELVRGIIRNFSDKEPLLKTLDKYV-RVMRTEHCFLLFEELGKRDKWLECL 111
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++F ++KQ WY D +Y LI + + G++ AM ++ MR PD+ Y +I
Sbjct: 112 EVFRWMQKQRWYIADNGVYSKLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITA 171
Query: 187 FLKDGSPADAM 197
L A A+
Sbjct: 172 HLHSKDKAKAL 182
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ FD I Q +PD Y LI + R G + +A ++W+ M ++FP+ TY+ +I
Sbjct: 423 ALQFFDTISDQRL-RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILI 481
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G +A ++M+ P + + ++KG
Sbjct: 482 DSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G+M+ A + MR+ L PD YT VI GF + G +A+ +
Sbjct: 297 PDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRV 356
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE-KHAYDPPE 250
++M+ P+ + + LL GL L D EEL E K PP+
Sbjct: 357 RDEMVAFGCLPDVVTYNTLLNGLCKERRL-----SDAEELLNEMKERGVPPD 403
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIEL-ERQEETILAVKIFDIIRK 134
+I G R + EE L +F K R + D+V+ LI L R+ E A + +R
Sbjct: 269 MLIGGFCRAGELEEAL-RFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMR- 326
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ PD IY +I R G M EA++V + M PD TY ++ G K+ +
Sbjct: 327 EFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLS 386
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
DA + +M + PP+ F L+ G
Sbjct: 387 DAEELLNEMKERGVPPDLCTFTTLIHG 413
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ D PD Y LI + GKM+EA + + M E++ PD+ TY +I GF G+
Sbjct: 536 RHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
+A +Y+ M P+ + ++ G ++ KK F+
Sbjct: 596 QEADWVYKKMGARGIEPDRYTYMSMING----HVVAGNSKKSFQ 635
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I R+G +++ Q MR + + PD TY +I G++K+G +A N+
Sbjct: 507 PNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNL 566
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M P+ + + +++ G H
Sbjct: 567 LKIMENENVQPDAVTYNMIISGFSVH 592
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI R G + +A+Q ++++ + L PD TY +I G + G A +
Sbjct: 402 PDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANEL 461
Query: 200 YEDMIKSPDPPEELPFRILL 219
++DM P + + IL+
Sbjct: 462 WDDMHSREIFPNHVTYSILI 481
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I + + QPDA Y +I + G M EA V++ M + PD TY +I G + G
Sbjct: 569 IMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAG 628
Query: 192 SPADAMNIYEDMIKSPDPPEE 212
+ + ++++M++ P++
Sbjct: 629 NSKKSFQLHDEMLQKGLAPDD 649
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L + ++++A ++ M++ + PD T+T +I G+ +DG+ A+
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ + P+ + + L+ G+
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMC 450
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y ++ L R G+ ++A +V+ +M + PD +++ +I GF + G +A+
Sbjct: 226 KPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALR 285
Query: 199 IYEDMIKSPDPPEELPFRILL 219
Y++M P+ + F L+
Sbjct: 286 FYKEMRGRRVTPDVVSFSCLI 306
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + ++ A R G + AM + +SM + + P TY V++G L++G A +
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M P+ F +L+ G
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFC 275
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 70/148 (47%), Gaps = 5/148 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIE-LERQEETILAVKIFDIIRKQ 135
+I G R + E+ LQ F T + L+ DIV LI+ + RQ + A +++D + +
Sbjct: 410 LIHGYCRDGNIEKALQ-FFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSR 468
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ + P+ Y LI + G+++ A + M + + P+ TY +I+G+ + G+ +
Sbjct: 469 EIF-PNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSK 527
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
M P+ + + L+ G +
Sbjct: 528 GQQFLPKMRHDKVMPDLITYNTLIHGYV 555
>gi|168019305|ref|XP_001762185.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686589|gb|EDQ72977.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 237
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I +R G++ EA +++ + ++ L PD +Y +I F+K G A+
Sbjct: 13 PDIVTYNTMIHICSRAGRVREAKSLFKKISEKGLVPDVASYNTLISMFIKRGEKQKALQY 72
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
Y+ M + P+ + FRILLK H +L ++
Sbjct: 73 YQKMKTAGVTPDTVTFRILLK----HSMLTAE 100
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
F I+ K + Y +I A G+++EA+++ M+ + + D T+T VI +
Sbjct: 88 FRILLKHSMLTAEGIAYNAMIYAFGNAGRVDEAVRISMEMQNKAVKADVITHTTVITVYA 147
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
K G +Y+ M ++ P+E+ ++ L+
Sbjct: 148 KMGLMEGVSRVYKRMKRAQCEPDEVTYKQLI 178
>gi|302780409|ref|XP_002971979.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
gi|300160278|gb|EFJ26896.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
Length = 136
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y Y L+ + +M EA +V + M K P+ TYT +I F + G P A
Sbjct: 32 SPDVYTYTSLVNGFCKVKRMVEAHRVLKRMAKGGCQPNVVTYTALIDAFCRAGKPMVAYK 91
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ E+M+ + P + +R L+ G
Sbjct: 92 LLEEMVGNGVQPNFITYRSLIGGFC 116
>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 375
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 56/102 (54%), Gaps = 3/102 (2%)
Query: 124 LAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+A+ +++ +I K ++PD ++ LI L GK A+ ++ +M + P+ TY
Sbjct: 251 MAINLWNQVIAKG--FKPDVQMHNILIHGLCSVGKTQLALSLYFNMNXWNCAPNLVTYNT 308
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++ GF KDG +A+ I+ ++++ P+ + + I LKGL
Sbjct: 309 LMEGFYKDGDLRNALAIWAHILRNGLQPDIISYNITLKGLCS 350
Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA +Y ++ R G++ ++WE M ++ + ++ ++RG +G ++
Sbjct: 22 SPDAVVYNAMLNGYFRVGRIKNCFELWELMGRKG-SRNVASFNIMMRGLFDNGEVDQVIS 80
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
I+E MI++ + + + IL+ GL +
Sbjct: 81 IWELMIENGFGEDSITYGILVDGLCKN 107
Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + + K +P+ ++Y LI K +A +V+ M P+ TY +I
Sbjct: 148 AVSVLSGMVKNG-CKPNTHVYNALINGFVGASKFEDATRVFREMGTH-CSPNIVTYNTLI 205
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-LPHPL 227
G K +A ++ ++M++ P + +L+KGL L H L
Sbjct: 206 NGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKL 249
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 13/173 (7%)
Query: 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK--QDWYQPDAY 143
FK EE + +K ++ + +++ L + R+EE + DI+R+ ++ +PD
Sbjct: 178 FKLKEEMVTSNVK--LVSAVYSTLISALFKHGRKEE------VSDILREMGENGCKPDTV 229
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y +I + + A +V + M ++ PD ++ +I K+G AM++ EDM
Sbjct: 230 TYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDLLEDM 289
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
+ PP+ L +RI+ GL L+ E +F Y P E KL
Sbjct: 290 PRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFK---GYVPRNESINKL 339
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRG 186
+FD ++K+ +P+ + LI L+ K+ EA+++ E M K + P++ YT +I+G
Sbjct: 109 VFDEMQKRG-VKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIKPNASIYTTLIKG 167
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
F G A + E+M+ S + L+ L H
Sbjct: 168 FCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKH 206
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 87 KDDEEKLQKFIKTHVL-RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
K+ E+ L K IK VL L ++ + L ++ E AV++ + +Q +PD Y
Sbjct: 233 KECEKLLDKVIKRGVLPNLFTYNLF--IQGLCQRGELDGAVRMVGCLIEQGP-KPDVITY 289
Query: 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+LI L + K EA M E L PDS TY +I G+ K G A I D +
Sbjct: 290 NNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVF 349
Query: 206 SPDPPEELPFRILLKGLL 223
+ P++ +R L+ GL
Sbjct: 350 NGFVPDQFTYRSLIDGLC 367
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L + ET A+ +F+ + +P+ +Y LI L+ G + EA Q+ M ++ L P
Sbjct: 366 LCHEGETNRALALFNEALGKGI-KPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIP 424
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ QT+ ++ G K G +DA + + MI P+ F IL+ G
Sbjct: 425 EVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + + LI + KM A+++ + M + PD TY ++ G K D M
Sbjct: 457 YFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVM 516
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
Y+ M++ P F ILL+ L +
Sbjct: 517 ETYKTMVEKGCAPNLFTFNILLESLCRY 544
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I D++ + PD Y Y L+ L +T K + M+ +++M ++ P+ T+ ++
Sbjct: 480 ALEILDVML-DNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ +A+ + E+M P+ + F L+ G +
Sbjct: 539 ESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKN 579
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 5/112 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + L+ +L R K++EA+ + E M+ + + PD+ T+ +I GF K+G A +
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTL 588
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE-----LFPEKHAY 246
+ M ++ P ++ L + +K F+E L P+ + Y
Sbjct: 589 FRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTY 640
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ +PD+Y Y LI + G + A ++ PD TY +I G +G
Sbjct: 314 NEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETN 373
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL--RSKVKKDFEE--LFPEKHAYD 247
A+ ++ + + P + + L+KGL ++ +++ + E L PE ++
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFN 430
>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDI--IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
K DIV I L VK+ D+ + +D PD + LI A A+ G M+ AM
Sbjct: 342 KPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAML 401
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+E M K+ + P+ TY VI F K G DAM + +MI P + + +++G L
Sbjct: 402 FFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAMEKFSEMIDMGVPLDTEVYMCMVEGYL 461
Query: 224 PH 225
H
Sbjct: 462 NH 463
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
Q Y PD Y +I AL + M++A V SM + PD+ TY +I G+L
Sbjct: 233 QQGYVPDVVTYNSVINALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYL 286
>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++ L + E+ A+ +F + + +PD + + LI L + K EA+ +++ M
Sbjct: 464 CLISALCKDEKVQDALNMFGDMSSKGC-KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLL 522
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
E + ++ TY +I FL+ G+ +A+ + DM+ P +++ + L+K L
Sbjct: 523 EGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALC 575
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +TG+ EA+ +++ ++ E + PD+ TY +I K+G DA +
Sbjct: 632 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 691
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ S P E+ + IL+ +
Sbjct: 692 LSRGVDSGFIPNEVTWYILVSNFI 715
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ LI L RTG + A++ M L PD TY +I G K G +A+N
Sbjct: 596 NPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALN 655
Query: 199 IYEDMIKSPDPPEELPFRILL-----KGLL--PHPLLRSKVKKDF 236
+++ + P+ + + L+ +G+ H LL V F
Sbjct: 656 LFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF 700
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A +Y+ LI AL + G++NE +++ E M PD T+ + I G K +A +
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 309
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P + +L+ GL
Sbjct: 310 VDRMLLRGFTPNSFTYGVLMHGLC 333
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI A R G M EA+++ M D TY +I+ + G+ + ++
Sbjct: 528 NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALF 587
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
EDM+ P + IL+ GL
Sbjct: 588 EDMMSKGLNPNNISCNILINGLC 610
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI+ L + G + A ++ M+ + P+ TYT +I F K+G +A N+
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + + L+ L
Sbjct: 447 LDEMSGKGLALNAVGYNCLISALC 470
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+A Y LI AL + K+ +A+ ++ M + PD T+ +I G K +A+ +Y
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 517
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+DM+ + + L+ L ++ +K + LF
Sbjct: 518 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 557
>gi|255586501|ref|XP_002533891.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526155|gb|EEF28491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 701
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L + G+ +E++++WE M K + D TY+ +I G + G+ A+ +
Sbjct: 255 PNVVTYNIMINGLCKCGRFDESLEIWERMTKNEREKDMFTYSSLIHGLCEAGNIDGAVRV 314
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
Y+++++S + + +L G K+K+ FE
Sbjct: 315 YKEIVESSLVVDAVTHNAMLNGFCR----AGKIKESFE 348
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA + ++ R GK+ E+ ++W M KE+ +Y +I+G ++G +A++I+
Sbjct: 326 DAVTHNAMLNGFCRAGKIKESFELWMVMGKENC-QTVVSYNILIKGLFENGKVEEAISIW 384
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
E + K PE + +L+ GL + L +K
Sbjct: 385 ELLCKKGCRPESTTYGVLIHGLCKNGRLNKALK 417
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DAY Y ++ L + G+M+EA+ + M K D +I GF++ DA+N +
Sbjct: 430 DAYAYSSMVDGLCKEGRMDEAISIVNQMDKRGYKLDPHVCNPLINGFVRASKLEDAINFF 489
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+M P + + L+KGL
Sbjct: 490 REMECKGCSPTIVSYNTLIKGLC 512
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L GK+ EA+ +WE + K+ P+S TY +I G K+G A+ I+++
Sbjct: 364 YNILIKGLFENGKVEEAISIWELLCKKGCRPESTTYGVLIHGLCKNGRLNKALKIFKEAE 423
Query: 205 KSPDPPEELPFRILLKGLL 223
P + + ++ GL
Sbjct: 424 DGPGKLDAYAYSSMVDGLC 442
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 112 VLIELERQEETI-LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+LI++ +++ I A+ + D + Q+ +PD + Y LI + + G + A++V++ M
Sbjct: 156 ILIKISCKKQQIEKAISLLDWMWSQN-LKPDVFSYGTLINGMVKVGDLLGALKVFDEMSV 214
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
+ D Y +I GF K G I+E ++K P + + I++ GL
Sbjct: 215 RGVVADVTCYNMLIDGFFKHGDYDKGKEIWERLVKDCSVYPNVVTYNIMINGLC 268
Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 43/87 (49%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD +Y L+ L K+ +A+Q++ M++ P+ T ++ G K A
Sbjct: 567 FKPDITMYNILMHGLCSVCKLEDALQLYSHMKRSTCVPNLVTRNTLMEGLYKVRDYEKAS 626
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLP 224
I++ ++K P+ + + I +KGL
Sbjct: 627 EIWDCILKDGLHPDIISYNITIKGLCS 653
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 29/167 (17%)
Query: 39 SPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIK 98
S +VD V H +L R K+ L++++G +E Q +
Sbjct: 322 SLVVDAVTHNAMLN-----------GFCRAGKIKESFELWMVMG-------KENCQTVVS 363
Query: 99 THVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158
++L + L E + EE A+ I++++ K+ +P++ Y LI L + G++
Sbjct: 364 YNIL-------IKGLFENGKVEE---AISIWELLCKKG-CRPESTTYGVLIHGLCKNGRL 412
Query: 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
N+A+++++ D+ Y+ ++ G K+G +A++I M K
Sbjct: 413 NKALKIFKEAEDGPGKLDAYAYSSMVDGLCKEGRMDEAISIVNQMDK 459
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 53/102 (51%), Gaps = 1/102 (0%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+Q + +Y L+ +L + G+++EA+Q+ M +L PD TY+ +I G K G A+
Sbjct: 322 FQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAI 381
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+Y++M + P +LKGL +L S + F+ L
Sbjct: 382 QLYKEMCFNRIFPNSFAHSGILKGLCEKGML-SDARMYFDSL 422
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD Y LI L + GK+ +A+Q+++ M +FP+S ++ +++G + G +DA
Sbjct: 358 QPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARM 417
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ +I S P+ + I++ G
Sbjct: 418 YFDSLIMSNLRPDVTLYNIMIDG 440
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y +I L + K+ E++Q+ E MR + L PD TY +I+ F K A
Sbjct: 533 EPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFE 592
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPH 225
+ +DM+ P + +L+ GL +
Sbjct: 593 LLDDMLIHNLEPTPATYNVLIDGLCRY 619
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y LI L G M EA+++ M K+ L PD TY V +GF G + A I
Sbjct: 218 PDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREI 277
Query: 200 YEDMIKSPD-PPEELPFRILLKG 221
+ M+ P+ + + +L+ G
Sbjct: 278 IQKMLTDEGLKPDLVTYTVLICG 300
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P A Y L+ A G +N+ ++ M +D+ P TYT VI+G K +++
Sbjct: 498 EPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQ 557
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+ EDM P+++ + +++
Sbjct: 558 LLEDMRAKGLAPDQITYNTIIQ 579
Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 44/92 (47%), Gaps = 2/92 (2%)
Query: 132 IRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+R+ D + P + ++ + G + A + M K + PD+ +Y +I G +
Sbjct: 173 LRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIV 232
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GS +A+ + DM K P+ + ++I+ KG
Sbjct: 233 AGSMEEALELTNDMEKQGLQPDMVTYKIVAKG 264
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM-RKEDLFPDSQTYTEV 183
A+++ + + KQ QPD YK + G M+ A ++ + M E L PD TYT +
Sbjct: 239 ALELTNDMEKQGL-QPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVL 297
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G + G+ +A+ + D++ S + + +LL L
Sbjct: 298 ICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLC 337
>gi|384485437|gb|EIE77617.1| hypothetical protein RO3G_02321 [Rhizopus delemar RA 99-880]
Length = 1080
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
+E A+ I+D ++ D +P + Y +I LA+ K+ AM+++E M++ ++ P+S T
Sbjct: 756 DEATDALLIYDEAKRHD-VKPTTFFYNVVISKLAKARKLESAMKLFEEMKQFNIAPNSIT 814
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLLPHPLLRSKVKKDFEE 238
Y +I ++ GS A ++ DM+ S P PF +++ + R + + F E
Sbjct: 815 YGAIISACVRAGSETLACKLFNDMLASSSFQPRVGPFNNMIQFYVRQQPNRERALEYFAE 874
Query: 239 LF-----PEKHAY 246
L P H Y
Sbjct: 875 LRRRHIKPSPHTY 887
Score = 40.0 bits (92), Expect = 0.91, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL---KDGSP-ADAMN 198
+ D I+ R G++ M + S++KE L TY V + +DG+P A +
Sbjct: 86 FTANDRILTARRHGQLKYLMAEYNSLKKEGLMLHDHTYNLVFESYANLRRDGTPLAPMLK 145
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
IY++M++S P F I+++ L
Sbjct: 146 IYDEMLESGIQPSSSTFSIIIRIL 169
>gi|357129239|ref|XP_003566273.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 550
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 129 FDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++++R + PD Y LI L R ++ EA+ V + M +E P++ TYT ++
Sbjct: 155 YEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCHPNAHTYTPIMHA 214
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ G +A + + MI + P + +L++ L SKV FEE+
Sbjct: 215 YCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEAL-------SKVGA-FEEV 259
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 92 KLQKFIKTH-VLRLLKMDIVA--------VLIELERQEETILAVKIFDIIRKQDWYQPDA 142
+LQ+F + V+R + + VA ++ L R + A+ + D++ ++ + P+A
Sbjct: 147 RLQQFDAAYEVVRWMTDNGVAPDVVTYSTLICGLCRAQRVAEALGVLDLMLEEGCH-PNA 205
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ Y ++ A TG ++EA ++ +SM P + TY +I K G+ + + E+
Sbjct: 206 HTYTPIMHAYCTTGMIHEAKKLLDSMIAAGCAPSTATYNVLIEALSKVGAFEEVDVLLEE 265
Query: 203 MIKSPDPPEELPFRILLKGLL 223
P+ + + + GL
Sbjct: 266 STSKGWIPDTITYSTYMDGLC 286
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI AL++ G E + E + PD+ TY+ + G + G + +
Sbjct: 238 PSTATYNVLIEALSKVGAFEEVDVLLEESTSKGWIPDTITYSTYMDGLCRSGRVDKSFAL 297
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ + P E+ ILL G+
Sbjct: 298 VDRMLSNGLHPNEVTLNILLNGVC 321
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y LI L G+ ++A ++ M + + P+ T++ +I F+K+G +A
Sbjct: 290 RPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEK 349
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE-----ELFPEKHAYDPPEEIF 253
+Y++MIK P+ + L+ G H L + K FE + FP Y + F
Sbjct: 350 LYDEMIKRSIDPDIFTYSSLINGFCMHDRL-DEAKHMFELMISKDCFPNVVTYSTLIKGF 408
Query: 254 GK 255
K
Sbjct: 409 CK 410
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F+++ +D + P+ Y LI + ++ E M+++ M + L ++ TYT +I
Sbjct: 382 AKHMFELMISKDCF-PNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLI 440
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
GF + +A +++ M+ P L + ILL GL +
Sbjct: 441 HGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKN 481
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A++ ++ + + A K++D + K+ PD + Y LI +++EA ++E M
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRS-IDPDIFTYSSLINGFCMHDRLDEAKHMFELMIS 391
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+D FP+ TY+ +I+GF K + M ++ +M + + + L+ G
Sbjct: 392 KDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFF 444
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + LI A + GK+ EA ++++ M K + PD TY+ +I GF +A +
Sbjct: 325 NPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKH 384
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++E MI P + + L+KG ++K ++ ELF E
Sbjct: 385 MFELMISKDCFPNVVTYSTLIKG-----FCKAKRVEEGMELFRE 423
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y L+ L + GK+ +AM V+E +++ + PD TY +I G K G D
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWE 524
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ ++ P + + ++ G
Sbjct: 525 LFCNLSLKGVSPNVIAYNTMISGFC 549
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D IY +I L + M++A+ ++ M + + PD TY+ +I G +DA
Sbjct: 255 EADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASR 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
+ DMI+ P + F L+ + L + +K ++E+ K + DP
Sbjct: 315 LLSDMIERKINPNVVTFSALIDAFVKEGKL-VEAEKLYDEMI--KRSIDP 361
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y I R +++ A+ V M K PD T + ++ G+ +DA+ +
Sbjct: 117 DLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALV 176
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
+ M++ P+ F L+ GL H
Sbjct: 177 DQMVEMGYKPDTFTFTTLIHGLFLH 201
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +++ +PD Y Y +I + + GK+ + +++ ++ + + P+ Y +I
Sbjct: 487 AMVVFEYLQRSTM-EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMI 545
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF + GS +A ++ + M + P + L++ L
Sbjct: 546 SGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARL 584
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+PD + + LI L K +EA+ + + M + PD TY V+ G K G A+
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPH 225
++ + M K + + + ++ GL +
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKY 271
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q QPD Y ++ L + G ++ A+ + + M K + D Y +I G K
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
DA+N++ +M P+ + L+ L +
Sbjct: 276 DALNLFTEMDNKGIRPDVFTYSSLISCLCNY 306
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R+ + LA+ + + K Y+PD L+ + ++++A+ + + M + PD+
Sbjct: 130 RRSQLSLALAVLAKMMKLG-YEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T+T +I G ++A+ + + M++ P+ + + ++ GL
Sbjct: 189 FTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLC 234
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
P+ Y +I R G EA + + M+++ P+S TY +IR L+DG
Sbjct: 535 SPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDG 587
>gi|242063818|ref|XP_002453198.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
gi|241933029|gb|EES06174.1| hypothetical protein SORBIDRAFT_04g001540 [Sorghum bicolor]
Length = 393
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K D PD Y LI LAR G + +A +M E PD TYT ++ G G
Sbjct: 227 KDDGVDPDLVTYNTLIFGLARAGMVRKARAFIHAMAAEGHLPDVITYTSLMNGMCVQGDA 286
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ + E+M P E + LL GL
Sbjct: 287 LGALKLLEEMEAEGCQPNERTYNTLLMGLC 316
>gi|356528924|ref|XP_003533047.1| PREDICTED: uncharacterized protein LOC100788379 [Glycine max]
Length = 238
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 92/206 (44%), Gaps = 18/206 (8%)
Query: 28 KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGS---LWRGKKLIGKEALFVILGLK 84
+N +FL KP+ A P G + G PR L +G+ ++ EA+ I LK
Sbjct: 7 QNPTFLKLKPQPS----TATTPRWGYVRVRCGGPRSHRTPLVKGR-ILSIEAIQAIQTLK 61
Query: 85 RF-KDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
R + + +L + + RL+K D++A L EL RQ+ +A+++F +R + Y D
Sbjct: 62 RLHRTNPPELTSLVSNTLTRLIKSDLLATLRELLRQQHCTIALRVFSTLRSE--YGADLS 119
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKED---LFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+Y ++ LA + ++ + E+ D + +I+ + S + IY
Sbjct: 120 LYAEMAQTLAANDMTDHLDRLILDLASENEIKCGDDHKGLASLIKAVVAARSRESTVRIY 179
Query: 201 EDMIKSP----DPPEELPFRILLKGL 222
M KS P+E +L+ GL
Sbjct: 180 GLMNKSGYGSVTEPDEYVVEVLVSGL 205
>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
Length = 651
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD+Y Y LI LA++G+M++A +++ M + TYT +I G K+ +A+
Sbjct: 512 FVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEAL 571
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFP 241
++ MI P FR L GL S+ + +EL P
Sbjct: 572 KFWDAMIDKGITPTAAAFRTLASGLCLSGKF-SRACRILDELAP 614
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ Y ++ L R GK++EA+ + S +++ + ++ YT +I GF K G + ++
Sbjct: 445 DSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELF 504
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
E+MI P+ + +L+ GL
Sbjct: 505 EEMIAKGFVPDSYCYNVLIDGL 526
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
AV +FD + +D +PD Y LI R G+ ++AM M+++ L PD TY +
Sbjct: 286 AVNVFDAMSTEDQVRPDVVSYNILIKGYCRAGRAHDAMARLSEMQEQAKLTPDKVTYLTL 345
Query: 184 IRGFLKDGSPADAMNIYEDM 203
++ +G+ + ++++M
Sbjct: 346 MQCHYSEGTFPVCIGLFQEM 365
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV L + +E AV F +++ +A Y LI + G ++++ +++E M
Sbjct: 452 IVNCLCRFGKLDE---AVACFRSCQEKG-IAVNAIFYTSLIDGFGKAGMVDQSKELFEEM 507
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ PDS Y +I G K G DA +Y+ M + IL+ GL
Sbjct: 508 IAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDGL 561
>gi|38344321|emb|CAE02149.2| OSJNBa0058K23.3 [Oryza sativa Japonica Group]
gi|38345611|emb|CAD41894.2| OSJNBa0093O08.13 [Oryza sativa Japonica Group]
Length = 368
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + G++++A ++ E M+KED+ D+ Y +I G ++ +A N+
Sbjct: 210 PNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIVADAVVYNILIAGLCREQRVTEAFNL 269
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P +++LL GLL
Sbjct: 270 FKSMVPKGCYPNSGTYQVLLDGLL 293
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + ++K+D DA +Y LI L R ++ EA +++SM + +P+S TY ++
Sbjct: 231 AFELCERMQKED-IVADAVVYNILIAGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLL 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDF 236
G L G +A + M P F++L+ GL H +L+ V++ F
Sbjct: 290 DGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGF 348
>gi|26450121|dbj|BAC42180.1| unknown protein [Arabidopsis thaliana]
Length = 217
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P YIY+ +I L K EA ++++++ + PD YT +IRGF + G A +
Sbjct: 15 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKL 74
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +MIK P E + +++ G
Sbjct: 75 WFEMIKKGMRPNEFAYNVIIHG 96
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K Y PD +Y +I G + A ++W M K+ + P+ Y +I G K G
Sbjct: 44 KDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVIIHGHFKRGEI 103
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ Y +M+++ L ++KG H
Sbjct: 104 SLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSH 135
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/88 (20%), Positives = 43/88 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ Y +I GK +EA +++++M + + P++ TY +I+GF K+
Sbjct: 115 RNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVE 174
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +Y+++ P + + L++ L
Sbjct: 175 KGLKLYKELKALGLKPSGMAYAALVRNL 202
>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
Length = 542
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y LI L + +++EA V +SM + + P ++YT ++ G+ K G +A +
Sbjct: 147 PDAATYNCLIWILCDSQRLDEAWGVLDSMLEVGVCPTVRSYTAILHGYCKQGRVLEAERL 206
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI+ P+ + + +L++GL
Sbjct: 207 LDTMIQVGCAPDVISYSVLIQGLC 230
>gi|403223056|dbj|BAM41187.1| pentatricopeptide repeat containing protein [Theileria orientalis
strain Shintoku]
Length = 1735
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ ++ + +P+ +Y LI + ++++AM+++ M+++ + P++ TY +I
Sbjct: 1369 AMRLFEDMKVRGQVKPNTIMYTTLIKGYGQNKQLDKAMKIFRMMQQDQVVPNTVTYNSII 1428
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ G + A ++ EDM+ + P+ + F ++KG ++S + K F+ L
Sbjct: 1429 DACARVGDMSGATSLLEDMLMNDIEPDLITFSTIIKGY----CVQSDMDKSFQLL 1479
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+KIF ++ +QD P+ Y +I A AR G M+ A + E M D+ PD T++ +I
Sbjct: 1405 AMKIFRMM-QQDQVVPNTVTYNSIIDACARVGDMSGATSLLEDMLMNDIEPDLITFSTII 1463
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
+G+ + + M + P+ + + LL+G + LL E+L+ +
Sbjct: 1464 KGYCVQSDMDKSFQLLSIMYERGIMPDVILYNSLLEGCVKSGLLWL-----CEKLWKQMQ 1518
Query: 245 AYDPPEEIF 253
YD P F
Sbjct: 1519 EYDIPPSNF 1527
>gi|449457845|ref|XP_004146658.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
gi|449484609|ref|XP_004156929.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Cucumis sativus]
Length = 501
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y +I L + ++EAM++ E M+ +++ P+ TY+ ++ GF K G + A +
Sbjct: 252 SPSVVTYTSIIHGLCQLNNVDEAMRLLEDMKDKNIEPNVFTYSSLMDGFCKTGHSSRARD 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK--HAYDPPEEIFGKL 256
I E MI+ P + + LL GL + + E+F + P ++GK+
Sbjct: 312 ILELMIQKRLRPNMISYSTLLNGLCNEGKINEAL-----EIFDRMKLQGFKPDAGLYGKI 366
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD+Y Y LI L R + EA ++ + M + P TYT +I G + + +AM
Sbjct: 217 EPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLCQLNNVDEAMR 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243
+ EDM P + L+ G S +D EL +K
Sbjct: 277 LLEDMKDKNIEPNVFTYSSLMDGFCKTG--HSSRARDILELMIQK 319
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 40/83 (48%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +P+ Y L+ L GK+NEA+++++ M+ + PD+ Y +++
Sbjct: 318 QKRLRPNMISYSTLLNGLCNEGKINEALEIFDRMKLQGFKPDAGLYGKIVNCLCDVSRFQ 377
Query: 195 DAMNIYEDMIKSPDPPEELPFRI 217
+A N ++M+ P + + +
Sbjct: 378 EAANFLDEMVLCGIKPNRITWSL 400
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 5/118 (4%)
Query: 107 MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR-TGKMNEAMQVW 165
+ ++A+L+E E Q ++ A + + +RK P LI A + +G M++AM ++
Sbjct: 153 ISVLAILVE-ENQLKS--AFRFYRDMRKMG-IPPTVTSLNVLIKAFCKNSGTMDKAMHLF 208
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+M PDS TY +I G + S +A + ++M P + + ++ GL
Sbjct: 209 RTMSNHGCEPDSYTYGTLINGLCRFRSIVEAKELLQEMETKGCSPSVVTYTSIIHGLC 266
>gi|414591143|tpg|DAA41714.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 101
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y Y L+ GK++ A++++E M++ P+ YT +I G K+G A
Sbjct: 6 FVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAF 65
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y+DM+K+ P++ + L+ L H R VK
Sbjct: 66 QLYDDMLKAGLIPDDSLYSALVGSL--HTDNRKDVK 99
>gi|414591144|tpg|DAA41715.1| TPA: hypothetical protein ZEAMMB73_506058 [Zea mays]
Length = 521
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD Y Y L+ GK++ A++++E M++ P+ YT +I G K+G A
Sbjct: 425 GFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAA 484
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y+DM+K+ P++ + L+ L H R VK
Sbjct: 485 FQLYDDMLKAGLIPDDSLYSALVGSL--HTDNRKDVK 519
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + D Y+Y +I A R G M A +V + + P+ +TY +I+GF K G
Sbjct: 228 KANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLIKGFCKIGQM 287
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEELFPEKHAY 246
A + DM ++ F ++ G ++ K+K E++ E + Y
Sbjct: 288 EAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKIGVELNIY 342
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I A+ G++ EA + + M K+ PD TY ++ G +G A+ +
Sbjct: 393 PSVLTYSVMIHGYAKKGRIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL 452
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M + P + + L+ GL
Sbjct: 453 FEEMKQRGTEPNVVAYTALISGL 475
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + Y +I L + G++++A++++E + + P+S Y +I GF + +DA+ +Y
Sbjct: 439 DEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVY 498
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
M ++ P + + L+ GL
Sbjct: 499 SQMAENDCSPTTITYNTLIHGLC 521
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
A+L R E A+++++ + + P+ Y ++ L + G EA VWE M
Sbjct: 234 ALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFKEAGDVWERMVA 293
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD TY +I G + A +Y +MIK+ P+ + + LLKG
Sbjct: 294 NNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFC 346
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +++++ K D PD + +I L G N+++Q+ E R D +Y+ +I
Sbjct: 388 ATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMI 447
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G KDG DA+ +YE + P + L+ G
Sbjct: 448 SGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFC 486
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +FD +R + PD Y L+ + +++ A+ + + M ++ PD+ Y ++
Sbjct: 178 AVTLFDSLRCRG-LAPDRITYSTLMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALL 236
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLL 223
G ++G AM ++E +++ P P + ++L GL
Sbjct: 237 GGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLC 276
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD Y +I L R+ ++ A +V+ M K L PD Y +++GF G +A
Sbjct: 296 HQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLLKGFCHAGRVGEAW 355
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++ M S + I+LKGL ++ D EL + + P F +
Sbjct: 356 KFWDSMSVS-GIRNVTSYNIMLKGLFDGGMVDKAT--DLWELLEKDDSLSPDMVTFSTM 411
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+++ I D ++P+++IY LI + K ++A++V+ M + D P + TY +I
Sbjct: 459 AVKLYEKI-SMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITYNTLI 517
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K +A +M++ + + L++GL
Sbjct: 518 HGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLC 556
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ +L G ++ A+ +++S+R L PD TY+ ++ GF+K+ +A+ +
Sbjct: 157 PNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYL 216
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++M P+ + + LL G
Sbjct: 217 LDEMPSYEVQPDAVCYNALLGGC 239
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMR-KEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Q D ++ LI L GK++EA Q+ M+ K + P+ TY ++ GF + G A
Sbjct: 577 QTDVVMHNILIHGLCSAGKVDEASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAA 636
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+++ ++++ P+ + + +KGL
Sbjct: 637 SLWMAILENGLVPDIISYNTRIKGLC 662
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 58 DGRPRGSLWRG----KKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL 113
D GSL RG KK+ G AL+ + L K ++T V+ + ++ L
Sbjct: 544 DVNTYGSLIRGLCRDKKIDGALALW-----------NQILDKGLQTDVV--MHNILIHGL 590
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
+ +E A ++ +++++ P+ Y L+ TG ++A +W ++ + L
Sbjct: 591 CSAGKVDE---ASQLLSEMKEKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGL 647
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
PD +Y I+G + + + +M+ S P + + IL++ ++ +
Sbjct: 648 VPDIISYNTRIKGLCSCNRTPEGVQLLNEMLASGIIPTAITWNILVRAVIKY 699
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y ++ L G +++A +WE + K+D L PD T++ +I G + G ++ I E+
Sbjct: 372 YNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEA 431
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVKK----DFEELFPEKHAYD 247
S +E + ++ GL L VK + P H Y+
Sbjct: 432 RTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYN 479
>gi|225447562|ref|XP_002269867.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Vitis vinifera]
Length = 616
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+ +++ +PD + LI R GK++EA +++ M+ D+ P++ TY +I G+ +
Sbjct: 373 ILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQV 432
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK--------DFEELFPE 242
G+ ++++M+++ + L + L+ GL + + KK D E L P
Sbjct: 433 GNSEMGGRLHDEMLRNGIKADILTYNALILGL----CMEGRTKKAAYLVKELDRENLVPN 488
Query: 243 KHAYD 247
+
Sbjct: 489 SSTFS 493
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + + P Y LI G +N M++ M K + PD T+ +I
Sbjct: 333 AIEVFKRMETMG-FSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLI 391
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-----------LPHPLLRSKVK 233
GF + G +A I+ +M + P + + L+ G L +LR+ +K
Sbjct: 392 NGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIK 451
Query: 234 KD 235
D
Sbjct: 452 AD 453
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI+ L G+ +A + + + +E+L P+S T++ +I G + A
Sbjct: 451 KADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQ 510
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+Y+ MI+S P F++L+
Sbjct: 511 LYKSMIRSGCHPNYHTFKMLI 531
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD IY LI R GKM +AM V E+M K+ + P+ TY +I GF + G A
Sbjct: 366 EPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++M + + + + +L+ L +R VK
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVK 460
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ T AV++F+ + KQ Y LI L GK+ E +++ E M L P+
Sbjct: 276 KNSNTAAAVRVFEEM-KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNE 334
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
T+ V++GF K G ADA + + M + P+ + + IL+ G
Sbjct: 335 ITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDG 378
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 108 DIVAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
+ A+L L + LA K F +R++ PD Y + +I L R G++ +A V +
Sbjct: 158 SVNALLAGLVGAKRVDLAEKAFRSALRRR--VSPDIYTFNTVISGLCRIGQLRKAGDVAK 215
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI---YEDMIKSPDPPEELPFRILLKGLL 223
++ L P TY +I G+ K G + ++ ++M+++ P + F +L+ G
Sbjct: 216 DIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYC 275
Query: 224 PHPLLRSKVKKDFEEL 239
+ + V+ FEE+
Sbjct: 276 KNSNTAAAVRV-FEEM 290
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P A + LI + A++V+E M+++ + TY +I G +G + +
Sbjct: 261 SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVK 320
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ E+M P E+ F +LKG ++
Sbjct: 321 LMEEMEDLGLSPNEITFGCVLKGFCKKGMM 350
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + D Y LI AL G++ +A+++ + M + L P+ TY +I+GF G+
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
A I M K + + + +K
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIK 517
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
VLI++ +E ++ K + Q P+ Y LI G +N A +++ SM +
Sbjct: 317 VLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK 376
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
PD YT +I G+ K +AM +Y M++ P+ + LL GL K
Sbjct: 377 GCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ----GGK 432
Query: 232 VKKDFEELFPEKHAYDPPEEIF 253
V D ++LF Y P +++
Sbjct: 433 V-GDAKKLFGVMKVYGIPGDLY 453
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI +T K+ EAM+++ M + PD +TY ++ G + G DA
Sbjct: 379 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 438
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFPEKHAYD 247
++ M P + + I L GL + L FE ELF + +Y+
Sbjct: 439 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCL-------FEAMELFNKLKSYN 482
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ ++ + + D + LI L + GK+ A +++E + +E+L PD TY +I
Sbjct: 471 AMELFNKLKSYNI-KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMI 529
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
F + G A +++ M K+ P+++ + L++G
Sbjct: 530 HEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRG 566
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++P Y +I AL + + +EA ++E M+ + + P +YT +I GF G +A
Sbjct: 238 FKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAK 297
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
++ +M+ P + F +L+
Sbjct: 298 RLFNEMVNQGVQPNVVTFNVLI 319
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + Q QP+ + LI L + GK+ EA + E M + + P+ TY +I
Sbjct: 296 AKRLFNEMVNQG-VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 354
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF G A ++ M P+ + + +L+ G
Sbjct: 355 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLING 391
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD L+ L ++ E + V + + PD TYT +I+G + + A
Sbjct: 128 SPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAAL 187
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M K P + + L+KGL
Sbjct: 188 LFTRMQKLGCTPNAITYGTLMKGLC 212
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
Q+ QPD Y +I R G++ +A +++ M K PD TY +IRGF +
Sbjct: 515 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFES 570
>gi|297723459|ref|NP_001174093.1| Os04g0618050 [Oryza sativa Japonica Group]
gi|222629567|gb|EEE61699.1| hypothetical protein OsJ_16179 [Oryza sativa Japonica Group]
gi|255675780|dbj|BAH92821.1| Os04g0618050 [Oryza sativa Japonica Group]
Length = 363
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + G++++A ++ E M+KED+ D+ Y +I G ++ +A N+
Sbjct: 210 PNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIVADAVVYNILIAGLCREQRVTEAFNL 269
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P +++LL GLL
Sbjct: 270 FKSMVPKGCYPNSGTYQVLLDGLL 293
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + ++K+D DA +Y LI L R ++ EA +++SM + +P+S TY ++
Sbjct: 231 AFELCERMQKED-IVADAVVYNILIAGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLL 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDF 236
G L G +A + M P F++L+ GL H +L+ V++ F
Sbjct: 290 DGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGF 348
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD IY LI R GKM +AM V E+M K+ + P+ TY +I GF + G A
Sbjct: 366 EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++M + + + + +L+ L +R VK
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVK 460
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ T AV++F+ + KQ Y LI L GK+ E +++ E M L P+
Sbjct: 276 KNSNTAAAVRVFEEM-KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNE 334
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
T+ V++GF K G ADA + + M + P+ + + IL+
Sbjct: 335 ITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILI 376
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 108 DIVAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
+ A+L L + LA K F +R++ PD Y + +I L R G++ +A V +
Sbjct: 158 SVNALLAGLVGAKRVDLAEKAFRSALRRR--VSPDIYTFNTVISGLCRIGQLRKAGDVAK 215
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI---YEDMIKSPDPPEELPFRILLKGLL 223
++ L P TY +I G+ K G + ++ ++M+++ P + F +L+ G
Sbjct: 216 DIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYC 275
Query: 224 PHPLLRSKVKKDFEEL 239
+ + V+ FEE+
Sbjct: 276 KNSNTAAAVRV-FEEM 290
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P A + LI + A++V+E M+++ + TY +I G +G + +
Sbjct: 261 SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVK 320
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ E+M P E+ F +LKG ++
Sbjct: 321 LMEEMEDLGLSPNEITFGCVLKGFCKKGMM 350
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + D Y LI AL G++ +A+++ + M + L P+ TY +I+GF G+
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
A I M K + + + +K
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIK 517
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ QPD + Y I A ++ G M A + E M+ + P+ +TYT +I G+ + P
Sbjct: 758 KREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVKTYTTLINGWARASLP 817
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A++ +E+M S P+ + L+ LL
Sbjct: 818 EKALSCFEEMKLSGLKPDRAVYHCLMTSLL 847
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ + K D +PD +Y ++I A GKM+ A+ + M+K+ P ++T+ +I
Sbjct: 540 AFAIFEDLIK-DGIKPDVVLYNNIITAFCGMGKMDRAVCTVKEMQKQRHKPTTRTFMPII 598
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF---- 240
GF + G A+++++ M S P + L+ GL+ + K ++ +E+
Sbjct: 599 HGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKME-KAEQILDEMTLAGV 657
Query: 241 -PEKHAY 246
P +H Y
Sbjct: 658 SPNEHTY 664
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI A+ GK+++A++V + M + + +TY+ +I GFLK A+A I
Sbjct: 484 PSVITYGCLINLYAKLGKVSKALEVSKEMEHAGIKHNMKTYSMLINGFLKLKDWANAFAI 543
Query: 200 YEDMIKSPDPPE 211
+ED+IK P+
Sbjct: 544 FEDLIKDGIKPD 555
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ +IY LI AR G + EA + + M++E + PD TYT I K G A
Sbjct: 730 NTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTI 789
Query: 201 EDMIKSPDPPEELPFRILLKGL----LPHPLLRSKVKKDFEELFPEKHAY 246
E+M P + L+ G LP L + L P++ Y
Sbjct: 790 EEMKSVGVKPNVKTYTTLINGWARASLPEKALSCFEEMKLSGLKPDRAVY 839
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
E+ ++ IK V+ L +I+ + + + + VK ++KQ ++P + +I
Sbjct: 545 EDLIKDGIKPDVV--LYNNIITAFCGMGKMDRAVCTVKE---MQKQR-HKPTTRTFMPII 598
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
AR G+M +A+ V++ MR P TY +I G ++ A I ++M +
Sbjct: 599 HGFARKGEMKKALDVFDMMRMSGCIPTVHTYNALILGLVEKRKMEKAEQILDEMTLAGVS 658
Query: 210 PEELPFRILLKG 221
P E + ++ G
Sbjct: 659 PNEHTYTTIMHG 670
>gi|357436533|ref|XP_003588542.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477590|gb|AES58793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 428
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDS 177
+ + A +F+I+ + Y+PD + Y + I A +++G + +AM W S +K L PD
Sbjct: 150 SHDIVTAYSLFEIMESSENYKPDFHTYNNFISAFSKSGNV-DAMLAWYSAKKATGLGPDL 208
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
QT+ VI G + + A ++E+M S P +LKG L
Sbjct: 209 QTFESVISGCVNSKNYEIADRVFEEMKISEMIPNVTILESMLKGFCSQKSL 259
>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g07290, mitochondrial; Flags: Precursor
gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 880
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 52/98 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD++ K+ P++ Y LI L G++ EA + + M ++ P ++TYT +I
Sbjct: 249 ALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ G A N++++MI P + +L+ GL
Sbjct: 309 KALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGL 346
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y LI L R GK+ EA V M K+ +FP TY +I G+ KDG A
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFE 392
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M K P F L++GL
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGL 416
Score = 44.3 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI AL G +++A +++ M P+ TYT +I G +DG +A
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANG 357
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-FPEKHAYDPPEEIFGKL 256
+ M+K P + + L+ G +V FE L EK A P F +L
Sbjct: 358 VCRKMVKDRIFPSVITYNALINGYCKD----GRVVPAFELLTVMEKRACKPNVRTFNEL 412
Score = 43.5 bits (101), Expect = 0.093, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L R G MN A ++ SM D+ PD T+T +I F K G A
Sbjct: 439 PDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAF 498
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
M++ +E+ L+ G+ KV K + LF
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGV-------CKVGKTRDALF 532
Score = 40.4 bits (93), Expect = 0.77, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y +I L + G++ EA ++ +M+ + P+ TYT +++G++ +G A+
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M++ + + LL+G +
Sbjct: 674 VRAMVERGYELNDRIYSSLLQGFV 697
Score = 39.3 bits (90), Expect = 1.5, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L R+G + + ++ E M+ P+ YT +I G + G +A +
Sbjct: 579 PSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKL 638
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M S P + + +++KG
Sbjct: 639 LSAMQDSGVSPNHVTYTVMVKG 660
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +IF ++ Q PD Y Y +I L + +++EAM + M +++ PD+ TY+ +I
Sbjct: 274 AKQIF-LVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLI 332
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
G K G +++ ++M P + + LL GL +
Sbjct: 333 DGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKN 373
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 106 KMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+MD V+ +L L + ET A+K+ I + +PD +Y +I L + ++EA
Sbjct: 112 QMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRST-RPDVVMYSTIIDGLCKDKLVDEAY 170
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ M +FPD TYT +I GF G +A + +MI P + L+ L
Sbjct: 171 DLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTL 230
Query: 223 L 223
Sbjct: 231 C 231
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y Y LI L + GK+ E+ + M K+ + PD Y+ ++ G+ G A
Sbjct: 217 NPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQ 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+ M+++ P+ + I++ GL
Sbjct: 277 IFLVMVQTGVNPDVYSYNIIINGLC 301
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ QP+ Y Y LI L + G++ + +++ + + D TYT +I G K+G
Sbjct: 387 KERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMF 446
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ + M + P + F I+++ LL
Sbjct: 447 DEALAMKSKMEDNGCIPNAVTFEIIIRSLL 476
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD IY L+ G++ +A Q++ M + + PD +Y +I G K +AMN
Sbjct: 252 KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMN 311
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ +M+ P+ + + L+ GL
Sbjct: 312 LLREMLHKNMIPDTVTYSSLIDGLC 336
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI G++ EA + M +++ P+ TY +I K+G ++ N+
Sbjct: 183 PDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNL 242
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M K P+ + + IL+ G
Sbjct: 243 LAVMTKKGVKPDVVIYSILMDG 264
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV IF+ + P A Y LI R G M+EA+++ M + PD TYT ++
Sbjct: 233 AVDIFE----EMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLM 288
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
F K G DA +++ M+ + P+ + F L+ GL
Sbjct: 289 SAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLC 327
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD Y L+ A + G++++A ++++ M L PD T+T ++ G +G D
Sbjct: 275 DKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMED 334
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKG 221
A+ + E++ + PP + ++ G
Sbjct: 335 ALELLEEITRRGCPPTIYTYNCVVDG 360
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 7/150 (4%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
EE L + + + + + V L + ER +E + V+ + P Y +I
Sbjct: 98 EEMLHRGMAANAITYSAL--VDGLCKCERLDEAVALVETM----AERGCAPTVVTYNSII 151
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
R +++EA E M E PD TYT +I GF K + + ++ +
Sbjct: 152 TGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFT 211
Query: 210 PEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
P+ + + ++ GL LR V FEE+
Sbjct: 212 PDIVTYSTVIDGLCKAGRLRDAVDI-FEEM 240
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ PD Y LI ++ + +++ + + PD TY+ VI G K G D
Sbjct: 173 EGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRD 232
Query: 196 AMNIYEDMIKSP 207
A++I+E+M +P
Sbjct: 233 AVDIFEEMSCAP 244
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 40/89 (44%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
D + PD Y L+ L++ ++ +A+QV + M PD+ T T V++
Sbjct: 32 NDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVD 91
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E+M+ + + L+ GL
Sbjct: 92 DARELVEEMLHRGMAANAITYSALVDGLC 120
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 35/85 (41%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + L+ L G+M +A+++ E + + P TY V+ G+ K A
Sbjct: 313 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEE 372
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ D P + + IL+ G
Sbjct: 373 LVADFRSRGFVPNTVTYNILVAGCC 397
>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
Length = 837
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y D+I+ R G M+ A V+ M DL P+ TY+ +I G K G A+++
Sbjct: 462 PNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDL 521
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL---RSKVKKDFEELF 240
++ M+ P + F ++ GL + R K+K EE F
Sbjct: 522 FDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGF 565
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 103 RLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159
R LK ++V I ++ ++ ++ A+ +FD + + P + + +I L + G+M+
Sbjct: 493 RDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN-IAPTDFTFNTIINGLCKVGQMS 551
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
EA ++ +E P TY ++ GF+K+G+ A+ +Y +M + P + + L+
Sbjct: 552 EARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLI 611
Query: 220 KGL 222
G
Sbjct: 612 NGF 614
Score = 43.5 bits (101), Expect = 0.076, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMN 198
P+ +Y +I M EA VW D P D TYT +I G LK+G A +
Sbjct: 672 PNRIVYNSMISGFRDLNNM-EAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASD 730
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+Y +M+ P+ + F +L+ GL L + +K EE+
Sbjct: 731 LYMEMLSKGIVPDIITFHVLVNGLCNKGQLEN-ARKILEEM 770
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
G ++ A+ ++ + ++ LFP+ TY+ +I G G+ A +Y M + PP
Sbjct: 339 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 398
Query: 216 RILLKGLLPHPLLRSKVKKDFEE 238
LL+G L PL + K F+E
Sbjct: 399 NSLLRGYLKAPLWE-EASKLFDE 420
Score = 41.6 bits (96), Expect = 0.35, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA Y +I A+ + N +++ E M++ P T+T VI + G+ +A+ +
Sbjct: 254 DAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLK 313
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRS------KVKKDFEELFPEKHAY 246
E+MI P + L+KG L S K+ +D LFP K Y
Sbjct: 314 EEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITED--GLFPNKVTY 363
Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
E+ +++ + R +K+D A I ++ ++ + L +++ + ++++ W P +
Sbjct: 237 EEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV-PSEATFTS 295
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I+A G M EA+++ E M + T +++G+ G+ A+N++ + +
Sbjct: 296 VIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDG 355
Query: 208 DPPEELPFRILLKG 221
P ++ + +L++G
Sbjct: 356 LFPNKVTYSVLIEG 369
>gi|293330977|ref|NP_001169349.1| uncharacterized protein LOC100383216 [Zea mays]
gi|30961817|gb|AAP37977.1| PPR2 [Zea mays]
gi|224028857|gb|ACN33504.1| unknown [Zea mays]
gi|414883415|tpg|DAA59429.1| TPA: pentatricopeptide repeat 2 [Zea mays]
Length = 571
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+++++Q +Y P Y LI+ L R+G+ A Q+++ M ++ P + YT +I
Sbjct: 200 ALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALI 259
Query: 185 RGFLKDGSPADAMNIYEDMIKSP-DPPEELPFRILLKGLL 223
+ + G +A+ + DM SP P+ + ++K +
Sbjct: 260 GAYCRSGLLDEALQLLNDMKSSPLCQPDVYTYSTIIKACI 299
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ L R + A ++FD + +Q QP +Y LI A R+G ++EA+Q+ M+
Sbjct: 223 LIVLLGRSGQPTRAHQLFDEMLQQG-CQPTPELYTALIGAYCRSGLLDEALQLLNDMKSS 281
Query: 172 DLF-PDSQTYTEVIRGFLKDGSPADAMN-IYEDMIKSPDPPEELPFRILLKG 221
L PD TY+ +I+ + D + D + +Y+DM + P + I+L G
Sbjct: 282 PLCQPDVYTYSTIIKACI-DAARFDLTDAMYKDMAERSISPNTVTQNIVLSG 332
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ + ++ QPD Y Y +I A + + +++ M + + P++ T V+
Sbjct: 271 ALQLLNDMKSSPLCQPDVYTYSTIIKACIDAARFDLTDAMYKDMAERSISPNTVTQNIVL 330
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
G+ K G D + DM+ S
Sbjct: 331 SGYGKAGRLDDMERVLSDMLDS 352
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ D + + PD Y + LI L + G+++EA V M K PD +Y ++
Sbjct: 264 AVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALM 323
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G+ GS +A +++ M++ P + + L+ G
Sbjct: 324 NGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLING 360
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + ++EAM + M ++L PD+ TY ++ G K G ++
Sbjct: 349 PNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWDL 408
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
E M S P + + + +LL H
Sbjct: 409 VEAMRASGQPADLITYNVLLDDYFKH 434
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 46/96 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++ D Y +I L + GK +A+Q++ M+K ++P+ Y VI G K G +A
Sbjct: 171 FRFDEVCYGTIINGLCKIGKTRDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEAC 230
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ +M+++ + + ++ G ++ VK
Sbjct: 231 GLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVK 266
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/85 (21%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y L+ L ++G++ A ++++ + + P+ +TY +I G K+G +A
Sbjct: 453 SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEA 512
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M+ + P + F +++ +L
Sbjct: 513 LLYKMVNNNYLPNYITFDTIVRAIL 537
>gi|413919532|gb|AFW59464.1| hypothetical protein ZEAMMB73_836837 [Zea mays]
Length = 365
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+A Y + L + ++++A +++E MRK+D+ D+ Y +I G +D +A +
Sbjct: 209 QPNATTYSTFMHFLCQRSQVDKAFELFERMRKQDIAADTVVYNILISGLCRDERVTEAFD 268
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+++ M P +++LL GL+
Sbjct: 269 LFKSMTSEGCCPNSGTYQVLLDGLI 293
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 8/119 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ +RKQD D +Y LI L R ++ EA +++SM E P+S TY ++
Sbjct: 231 AFELFERMRKQD-IAADTVVYNILISGLCRDERVTEAFDLFKSMTSEGCCPNSGTYQVLL 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDF 236
G + G +A ++ M P +++L+ GL H +L+ V + F
Sbjct: 290 DGLISLGKLFEAKSLVCTMSTEGVRPSFQSYKLLIDGLCSDDCVGDAHLVLKQMVGQGF 348
>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
Length = 548
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 129 FDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++++R + PD Y LI L G++ EA+ V + M +E P++ TYT ++
Sbjct: 153 YEVVRWMAANGVAPDVVTYSTLISGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHA 212
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ G +A ++ E M+ + P + +L++ L
Sbjct: 213 YCTSGMIHEAKDLLETMVAAGFAPSTATYNVLVEALC 249
>gi|47497141|dbj|BAD19190.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
gi|47497588|dbj|BAD19658.1| zinc finger (CCCH-type) protein-like [Oryza sativa Japonica Group]
Length = 462
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ +PDA Y LI AR G A+ +++ M + + PDS +Y ++ + G P
Sbjct: 74 REAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSGHP 133
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA ++ DM + P + + LL G+
Sbjct: 134 EDAYRVFADMAEKGIAPCDTTYNTLLDGM 162
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A R + + V MR+ + PD+ TY +I G + G P A+++
Sbjct: 45 PDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDL 104
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+++M++S P+ + L+ H L RS +D +F +
Sbjct: 105 FDEMLRSGIAPDSWSYNPLM-----HCLFRSGHPEDAYRVFAD 142
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
I A+ +FD + + PD++ Y L+ L R+G +A +V+ M ++ + P TY
Sbjct: 99 IHALDLFDEMLRSGI-APDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNT 157
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++ G + G +A ++ + ++ P + + ++ GL
Sbjct: 158 LLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCS 199
>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
Length = 1014
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 130 DIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
D++RK + + PD Y +I L + G +N+A ++W M + L PD Y IR
Sbjct: 778 DLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G A+ IY +MI+S P +R LL G+
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGI 872
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y LI L R G ++ AM++ M + + ++ T+T +I GF KD +A +
Sbjct: 441 PTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARL 500
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
++ MI S P E+ F ++++G L ++K F+
Sbjct: 501 FDKMIDSNVIPNEVTFNVMIEGY----CLVGNIRKAFQ 534
Score = 40.4 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI AL + G + +A+ +++ MR + + Y +I G+ K GS A
Sbjct: 370 EPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARG 429
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M+K P + L+ GL
Sbjct: 430 LLSGMVKEGLTPTAASYSPLIAGL 453
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 102 LRLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158
+R +K+D+V+ I + +Q + + +F +++Q +PD Y +I AL++ M
Sbjct: 611 VRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQG-VKPDDIFYTCMIDALSKEENM 669
Query: 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
+A+ W+ M + P++ T+T +I K G A + ++M+ P + +
Sbjct: 670 IQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCF 729
Query: 219 L 219
L
Sbjct: 730 L 730
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+KMD V +L L R+++ A K+ RK+ ++ D Y LI+ + G ++ A
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYF-IDEVSYGTLIVGYFKDGNVDRA 507
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+++W+ M+++++ P + TY +I G + G A++ ++++S P+E + +L G
Sbjct: 508 LKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHG 567
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K++D +++++ P Y +I L + GK +A+ + + L PD TY ++
Sbjct: 507 ALKLWDEMKEKEII-PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
G+ ++G A + M+++ P+ ILL+GL +L +K
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALK 614
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+ +++ K + PD Y ++ L + G++ +A + M+ L P+ TY ++
Sbjct: 227 AVEFLNVMGKYNC-SPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV 285
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFE--ELF 240
G+ K G +A N+ E M ++ P+ + +L+ GL + K++ + E +L
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLL 345
Query: 241 PEKHAYD 247
P+ +Y+
Sbjct: 346 PDVVSYN 352
Score = 44.3 bits (103), Expect = 0.045, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L G++ EA ++ + M L PD +Y +I G L+ ++A +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370
Query: 200 YEDMIKSPDPPEELPFRILLK 220
E+M + P + I++K
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVK 391
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ + G + EA V E M + +L PD TY +I G +G +A +
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
++M P+ + + L+ G L SK+ + F+ L
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEW----SKISEAFKLL 371
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 36/73 (49%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI +L + G++++A + M +++L PD TY +I G +A
Sbjct: 627 DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFM 686
Query: 201 EDMIKSPDPPEEL 213
M++ + P+++
Sbjct: 687 SKMLEKGNLPDQV 699
Score = 37.4 bits (85), Expect = 5.5, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A + ++ + GKM++A M + PD TY +I G+ K G+ +A
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439
Query: 199 IYEDM 203
++M
Sbjct: 440 TMDEM 444
>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
Length = 546
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +FD + + + P Y LII L G++ EA +VW+ M + P++ TY +I
Sbjct: 398 ARGLFDELERG--FVPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALI 455
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+GF K G + ++++M+ P + ++ L+ L
Sbjct: 456 KGFCKIGKSNEGYALFKEMVAKGCTPSKFLYQALVDSL 493
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD I +PDA +Y L+ GK+ +A ++ + M + P+ TY+ VI
Sbjct: 258 AQQLFDDIVASG-RRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVI 316
Query: 185 RGFLKDGSPADAMNIYEDMIKS---PDPP 210
K+G +A ++ +M+ + PD P
Sbjct: 317 EACCKEGKSIEACDLTREMLGAGYVPDTP 345
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ A G + A Q+++ + PD+ YT ++ G+ G DA I
Sbjct: 237 PDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARI 296
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + P E+ + ++++
Sbjct: 297 MDEMEAAGVKPNEVTYSVVIEACC 320
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +I D + +P+ Y +I A + GK EA + M PD+ +V+
Sbjct: 293 AARIMDEMEAAG-VKPNEVTYSVVIEACCKEGKSIEACDLTREMLGAGYVPDTPLCAKVV 351
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+DG +A I+ M+K PP+ L+ L + +++ + + F+EL
Sbjct: 352 DVLCQDGKAGEANEIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQ-EARGLFDEL 405
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ P+ L+ L G ++ A++V + M + PD TYT V+ + G A
Sbjct: 199 YITPNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGA 258
Query: 197 MNIYEDMIKSPDPPEELPFRILLKG 221
+++D++ S P+ + +L+ G
Sbjct: 259 QQLFDDIVASGRRPDATMYTVLVDG 283
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 57/115 (49%), Gaps = 5/115 (4%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V+IE +E +++ D+ R+ Y PD + ++ L + GK EA ++W M
Sbjct: 313 SVVIEACCKEGK--SIEACDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEIWRQM 370
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+ + PD+ + +I K+G +A +++++ + P L + L+ GL
Sbjct: 371 VKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDELERG-FVPSLLTYNSLIIGLC 424
>gi|255542990|ref|XP_002512558.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548519|gb|EEF50010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 511
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K++ IR+++ P + Y L+ + + N ++W +R PD +YT ++
Sbjct: 377 ALKLYRKIRQENLCDPSVHTYNILLGMFMKLNRFNIVNEIWNDLRSSGSGPDLDSYTLLV 436
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEE 238
G + A + +MI+ P++ F +L GL+ +LR+ ++KK +E
Sbjct: 437 HGLCEKQKWQKACQFFVEMIEKGLLPQKATFEMLYAGLIQSNMLRTWRRLKKKLDE 492
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 7/145 (4%)
Query: 118 RQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
R E TI+ A K+FD +R Q +PD + L+ +R K + + M + + P
Sbjct: 264 RFERTIMKADKVFDEMR-QKGIEPDVTSFSILLHVYSRAHKPQLTVDKLKLMEEMGICPT 322
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKV 232
TYT V++ G DA + E M+++ P + K P L+
Sbjct: 323 VATYTSVLKCLCSCGRIDDAEELLEQMVRNGVSPNAATYNCFFKEYRGRKDPETALKLYR 382
Query: 233 KKDFEELF-PEKHAYDPPEEIFGKL 256
K E L P H Y+ +F KL
Sbjct: 383 KIRQENLCDPSVHTYNILLGMFMKL 407
>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 811
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G++ EA ++ + K + P TY+ +I GF K G+ +
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
YEDMIK PP+ + + +L+ GL L+
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLM 477
Score = 45.8 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ K+F+ ++++ P Y +I L + G+++EA ++ L PD Y +I
Sbjct: 696 SFKLFEEMQEKG-ISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 754
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
RG+ K G +A +YE M+++ P++L R L
Sbjct: 755 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 788
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D ++ I ++G + A V++ M + + P+ TYT +I+G +DG +A +Y
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++K P + + L+ G LRS +E++ K Y P I+G L
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL-YEDMI--KMGYPPDVVIYGVL 467
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 59/108 (54%), Gaps = 1/108 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V++ L + + AV++F+ + +++ PD++ Y LI LA+ GK+N+A +++ +
Sbjct: 294 VILGLCQNDRIDEAVQMFEKMNERN-VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHS 352
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ P + YT +I G S DA ++ DM + PP + + +++
Sbjct: 353 GVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMI 400
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 46/78 (58%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I+ L + +++EA+Q++E M + ++ PDS +Y +I G K G DA N+++ ++
Sbjct: 291 YNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLL 350
Query: 205 KSPDPPEELPFRILLKGL 222
S P + + L+ GL
Sbjct: 351 HSGVTPSTVAYTSLIHGL 368
Score = 43.1 bits (100), Expect = 0.099, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++++Q +P LI L + G++ EA +V ++M PD TY ++ G +
Sbjct: 532 DMVKRQ--CKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCR 589
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G A + DM+ P + + L+ GL
Sbjct: 590 AGQTERARELLSDMVARGLAPNVVTYTALVSGL 622
Score = 42.0 bits (97), Expect = 0.28, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 10/123 (8%)
Query: 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
T AVKIF ++ ++ + P +Y LI +L++ + ++ + M FPDS T+T
Sbjct: 26 TFEAVKIFSLM--EECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFT 83
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL-LRSKVKKDFE--E 238
++ G K G +A + ++M PP L H L LR +++ F+ E
Sbjct: 84 TILCGLCKAGKMDEAELVMDEMRSRMIPP-----YFATSSFLAHELCLRGSMERAFQLLE 138
Query: 239 LFP 241
+ P
Sbjct: 139 IMP 141
Score = 39.7 bits (91), Expect = 1.2, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
GK++EA ++ + M + PD TY+ +I G DA ++ EDM+K P +
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 545
Query: 216 RILLKGL 222
L+ GL
Sbjct: 546 NTLIHGL 552
Score = 38.1 bits (87), Expect = 3.8, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + ++ EA V+ M+ P+ TYT +I GF G + +
Sbjct: 610 PNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKL 669
Query: 200 YEDMIKSPDPPEELPFRIL 218
+ +M+ + P+ + + L
Sbjct: 670 FGEMVCAGISPDHVVYGTL 688
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 108 DIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
D+ VLI+ L +++ET K+ ++ + + PD++ + ++ L + GKM+EA V +
Sbjct: 45 DVYNVLIDSLSKRQETEAVKKMVQVMVDRGCF-PDSFTFTTILCGLCKAGKMDEAELVMD 103
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
MR + P T + + GS A + E M
Sbjct: 104 EMRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIM 140
Score = 37.7 bits (86), Expect = 4.6, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 33/83 (39%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ R G+ A ++ M L P+ TYT ++ G K +A +
Sbjct: 575 PDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGV 634
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M S P + L+ G
Sbjct: 635 FAQMKSSGCAPNLFTYTALILGF 657
>gi|222622668|gb|EEE56800.1| hypothetical protein OsJ_06387 [Oryza sativa Japonica Group]
Length = 540
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D PD Y LI AL R + EA+QV+E M E P + Y +I F+ G+
Sbjct: 277 EDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYNALIFNFISVGNFD 336
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ Y+DM+ + PP +R +++ LR + D ++F E
Sbjct: 337 RCIKYYKDMLDNNCPPNIDTYRKMIRA-----FLRERKVADALQMFDE 379
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 106 KMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
+ +I VLI L R+ LA + R + D ++Y ++I AR G++++
Sbjct: 213 RKEIFTVLINCLCRRSHVGLASSLLQASRGET-IDLDNHMYNEVIGGWARFGRVDKVEHF 271
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
WE+M ++ L PD +Y +I + +A+ ++E M+ P + + L+
Sbjct: 272 WETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYNALI 326
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAV--LIE-LERQEETILAVKIFDIIRKQ 135
VI G RF +K++ F +T + L D V+ LIE L R A+++F+ + +
Sbjct: 255 VIGGWARF-GRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHE 313
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
Y P Y LI G + ++ ++ M + P+ TY ++IR FL++ AD
Sbjct: 314 G-YCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVAD 372
Query: 196 AMNIYEDMIK 205
A+ ++++M+
Sbjct: 373 ALQMFDEMLS 382
>gi|218190552|gb|EEC72979.1| hypothetical protein OsI_06882 [Oryza sativa Indica Group]
Length = 541
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D PD Y LI AL R + EA+QV+E M E P + Y +I F+ G+
Sbjct: 278 EDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYNALIFNFISVGNFD 337
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ Y+DM+ + PP +R +++ LR + D ++F E
Sbjct: 338 RCIKYYKDMLDNNCPPNIDTYRKMIRA-----FLRERKVADALQMFDE 380
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 106 KMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
+ +I VLI L R+ LA + R + D ++Y ++I AR G++++
Sbjct: 214 RKEIFTVLINCLCRRSHVGLASSLLQASRGET-IDLDNHMYNEVIGGWARFGRVDKVEHF 272
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
WE+M ++ L PD +Y +I + +A+ ++E M+ P + + L+
Sbjct: 273 WETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYNALI 327
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAV--LIE-LERQEETILAVKIFDIIRKQ 135
VI G RF +K++ F +T + L D V+ LIE L R A+++F+ + +
Sbjct: 256 VIGGWARF-GRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHE 314
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
Y P Y LI G + ++ ++ M + P+ TY ++IR FL++ AD
Sbjct: 315 G-YCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVAD 373
Query: 196 AMNIYEDMIK 205
A+ ++++M+
Sbjct: 374 ALQMFDEMLS 383
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 45/82 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y Y+++I L + K +EA +V+ ++ FPD YT VI+GF G A+A +
Sbjct: 269 PSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKL 328
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +MI+ P E + +++ G
Sbjct: 329 WFEMIQKGLVPNEYTYNVMIYG 350
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+I+ L++ + +E A ++F+ ++ + ++ PD +Y +I G + EA ++W
Sbjct: 276 EIINGLLKRRKNDE---AFRVFNDLKDRGYF-PDRVMYTTVIKGFCDMGLLAEARKLWFE 331
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
M ++ L P+ TY +I G+ K A+A +Y+DM + + ++ GL H
Sbjct: 332 MIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLH 389
Score = 38.1 bits (87), Expect = 3.2, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y +I L GK +EA+ ++ M ++ + D +Y +I+G ++G A A
Sbjct: 372 YAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKAT 431
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
N+ ++ P F L+K L
Sbjct: 432 NLLNKLLIQGLEPSVSSFTPLIKCL 456
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V ++L R +E +L +K + + + + PDA Y +I L + G++ E + + M
Sbjct: 295 LVDGFLKLGRLDEALLQLK--EAVER--GFIPDAVTYTSIIDGLCKLGRVEEGCERFHEM 350
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
R PD+ TY +I GF+K A +Y M++S + + I+L GL
Sbjct: 351 RNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 405
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 129 FDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
F +++K D + P Y L+ L + G+++EAM + E M ++ P +TYT VI G
Sbjct: 96 FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDG 155
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G +A I+ DM+ + P+ + L+ GL
Sbjct: 156 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y I L + ++++A Q+ + M ++ P + TYT ++ G LK G +AM
Sbjct: 73 EPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMA 132
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
I E M++ + P + +++ GL
Sbjct: 133 ILEQMVEKGNSPTLKTYTVVIDGL 156
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+VA L + ER EE I VK + P + Y L+ + G+++EA+ +
Sbjct: 260 LVAALCKAERTEEAIAFVKKM----SERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ PD+ TYT +I G K G + + +M P+ + + L+ G + ++
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAM----QVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ +PDA++Y LI LA+ GK++EA+ Q+ E+ + PD + VIR G
Sbjct: 175 NGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASG 234
Query: 192 SPADAMNIYEDMIKSPD 208
+ DA+ ++++ S D
Sbjct: 235 NLEDALAYFDELDDSLD 251
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 40/79 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y ++ L + G++ EA + +M + TY+ ++ GF +G+ + A+ ++ M+
Sbjct: 397 YNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRML 456
Query: 205 KSPDPPEELPFRILLKGLL 223
P + + I+++GL
Sbjct: 457 DRGCEPNLVSYNIIIRGLC 475
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD-GSPADAM 197
+P+ Y +I L R GK+ +A +E + + L PD T+ + G + + D +
Sbjct: 461 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGV 520
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++E M+ P + IL+ G+
Sbjct: 521 ELFESMVSQGTSPNLHSYSILMDGIC 546
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202
+ + L+ AL + + EA+ + M + FP TYT ++ GFLK G +A+ ++
Sbjct: 255 FTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKE 314
Query: 203 MIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++ P+ + + ++ GL + ++ F E+ Y+P + L
Sbjct: 315 AVERGFIPDAVTYTSIIDGLCKLGRVEEGCER-FHEM--RNRGYEPDAVTYAAL 365
>gi|449437410|ref|XP_004136485.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
gi|449519964|ref|XP_004167004.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Cucumis sativus]
Length = 534
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
DI+A V+ L ++ + A FD ++ + ++PD +Y L+ R G ++EA
Sbjct: 214 CNADIIAFSNVISILCKKRRAVEAQSFFDNLKHK--FEPDVIVYTSLVHGWCRAGDISEA 271
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
V+ M+ + P+ TY+ VI + G A +++ +M+ + P + F L++
Sbjct: 272 ESVFREMKMAGISPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIR 330
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y Y +I AL R+G++ A V+ M P+S T+ +IR L+ G +
Sbjct: 284 SPNVYTYSIVIDALCRSGQITRAHDVFAEMLDAGCNPNSVTFNNLIRVHLRAGRTEKVLQ 343
Query: 199 IYEDM 203
+Y M
Sbjct: 344 VYNQM 348
>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 560
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q +QPD + Y +I L + GK++EA++++E M + P TY +I K G+
Sbjct: 164 QQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNY 223
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
AM +Y DM + P+ + + I+++ L
Sbjct: 224 VMAMKLYNDMQDAGFHPDRVTYSIMMEVL 252
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 51/104 (49%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L+ Q+E+ LA+K FD ++Q+ Y+ D Y +I + R ++ + MR+E P
Sbjct: 41 LKHQKESGLALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQEMRREGCEP 100
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
TY +I + + +AM I+ M + P+ + + L+
Sbjct: 101 CVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLV 144
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF ++++ PD Y L+ ++ G + AM +++ M++ PD+ TY+ +I
Sbjct: 121 AMRIFYQMQEEG-CSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVII 179
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL--LKGLLPHPLLRSKVKKDFEE--LF 240
K G ++A+ ++E+M++ P + + I+ L+ + ++ K+ D ++
Sbjct: 180 HCLGKAGKVSEALKLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFH 239
Query: 241 PEKHAYDPPEEIFGKL 256
P++ Y E+ G++
Sbjct: 240 PDRVTYSIMMEVLGQI 255
>gi|224115578|ref|XP_002332091.1| predicted protein [Populus trichocarpa]
gi|222874911|gb|EEF12042.1| predicted protein [Populus trichocarpa]
Length = 521
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI A A G ++ A+Q+++ M + PD TYTE+IRG+ + +A +
Sbjct: 401 PDVVTYNLLIGAAAHAGHIHYALQLYDEMLRGGCNPDMITYTELIRGYCVKYNTKEAEEL 460
Query: 200 YEDMIKSPDPPEELPFRILLK 220
++KS + +PF+IL+K
Sbjct: 461 LAKLLKSGLLIDHVPFQILIK 481
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ +L ++GK++EA + + M + + PD +Y +I+G G A
Sbjct: 261 PDVFTYNTLVSSLCKSGKLDEACYMHDVMLRMGVAPDEVSYKLIIQGLCVCGDVDKANGY 320
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ PE L + +++ G
Sbjct: 321 LNCTLEKSMIPEPLVWNLIIDG 342
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI A + G + A + + M + LFPD TY +I G A+ +
Sbjct: 366 PNVFTYNALIHAQVKIGNILYAYFLKKDMLLKGLFPDVVTYNLLIGAAAHAGHIHYALQL 425
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
Y++M++ P+ + + L++G
Sbjct: 426 YDEMLRGGCNPDMITYTELIRG 447
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 105 LKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
+KMD V +L L R+++ A K+ RK+ ++ D Y LI+ + G ++ A
Sbjct: 449 MKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGYF-IDEVSYGTLIVGYFKDGNVDRA 507
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+++W+ M+++++ P + TY +I G + G A++ ++++S P+E + +L G
Sbjct: 508 LKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTILHG 567
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 1/109 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K++D +++++ P Y +I L + GK +A+ + + L PD TY ++
Sbjct: 507 ALKLWDEMKEKEII-PSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
G+ ++G A + M+++ P+ ILL+GL +L +K
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALK 614
Score = 47.8 bits (112), Expect = 0.004, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+ +++ K + PD Y ++ AL + G++ +A + M+ L P+ TY ++
Sbjct: 227 AVEFLNVMGKYNC-SPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILV 285
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFE--ELF 240
G+ K G +A N+ E M ++ P+ + +L+ GL + K++ + E +L
Sbjct: 286 YGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLL 345
Query: 241 PEKHAYD 247
P+ +Y+
Sbjct: 346 PDVVSYN 352
Score = 44.3 bits (103), Expect = 0.046, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L G++ EA ++ + M L PD +Y +I G L+ ++A +
Sbjct: 311 PDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKL 370
Query: 200 YEDMIKSPDPPEELPFRILLK 220
E+M + P + I++K
Sbjct: 371 LEEMSEKGVKPNAVTHNIMVK 391
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ + G + EA V E M + +L PD TY +I G +G +A +
Sbjct: 276 PNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKL 335
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
++M P+ + + L+ G L SK+ + F+ L
Sbjct: 336 RDEMENLKLLPDVVSYNTLINGCLEW----SKISEAFKLL 371
Score = 40.8 bits (94), Expect = 0.53, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 14/89 (15%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI +L + G++++A + M +++L PD TY +I G +A
Sbjct: 627 DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREA---- 682
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLR 229
EE ++L KG LP +L+
Sbjct: 683 ----------EEFMSKMLEKGXLPXQVLQ 701
Score = 37.4 bits (85), Expect = 5.4, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A + ++ + GKM++A M + PD TY +I G+ K G+ +A
Sbjct: 380 KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAFR 439
Query: 199 IYEDM 203
++M
Sbjct: 440 TMDEM 444
>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
Length = 374
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD Y Y L+ GK++ A++++E M++ P+ YT +I G K+G A
Sbjct: 278 GFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAA 337
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y+DM+K+ P++ + L+ L H R VK
Sbjct: 338 FQLYDDMLKAGLIPDDSLYSALVGSL--HTDNRKDVK 372
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y L L R +++EA + M + + P+ TYT +I KDG +A ++
Sbjct: 177 DIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLF 236
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE--LFPEKHAY 246
+M + P + + +++ G +R + +K+ E+ P+ + Y
Sbjct: 237 REMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTY 286
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I A+ G + EA + + M K+ PD TY ++ G +G A+ +
Sbjct: 246 PSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL 305
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M + P + + L+ GL
Sbjct: 306 FEEMKQRGTEPNVVAYTALISGL 328
>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
[Acantholippia salsoloides]
Length = 410
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y Y LI L + K++ A ++++ M + L P+ T+T +I G K+G AM
Sbjct: 195 EPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAME 254
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
IY+ M+ + + + L+ GL
Sbjct: 255 IYKQMLSQSLSADLITYNTLIYGLC 279
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA++I+ + Q D Y LI L + G + +A + + MR + L PD TYT +
Sbjct: 251 LAMEIYKQMLSQS-LSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTL 309
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K+G A + MI+ +++ + L+ GL
Sbjct: 310 IDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLC 349
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI + G+++ AM++++ M + L D TY +I G K G A N+
Sbjct: 231 PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNL 290
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M P+++ + L+ G
Sbjct: 291 IDEMRMKGLKPDKITYTTLIDGCC 314
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 118 RQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
++ E +A +FD I K W +P + L+ R G ++E ++ +M + PD
Sbjct: 140 KEGEIRVARSVFDAITK--WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPD 197
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY+ +I G K+ A ++++M+ P + F L+ G
Sbjct: 198 VYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDG 242
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +FD + + +QP+ Y LI L + G N A+++ SM + + PD YT +I
Sbjct: 158 ALHLFDKMIGE-GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSII 216
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
KD +A N++ M+ P+ + L+ L
Sbjct: 217 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLC 255
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
Q E AVK+FD + + Y P+ Y LI + +M++A ++E M +++L P++
Sbjct: 327 QSEMDEAVKVFDTM-VHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTV 385
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY ++ G DA+ ++ +M+ P+ +RILL L
Sbjct: 386 TYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 429
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 127 KIFDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+F + + D + PD Y LI + ++ A V + K PD+ T+T +I
Sbjct: 87 TVFSLSNQMDSFGIPPDVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLI 146
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
RG +G DA+++++ MI P + + L+ GL
Sbjct: 147 RGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLC 185
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY +I + R G++ A ++ ++ + L P+ +TYT +I G + G +A +
Sbjct: 451 PDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKL 510
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M + P+ + + +GLL
Sbjct: 511 FMEMDGNGCSPDGCTYNTITQGLL 534
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y+ L+ L + ++EAM + +++ ++ PD Q YT VI G + G A +I
Sbjct: 416 PDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDI 475
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ ++ P + I++ GL LL + K F E+
Sbjct: 476 FSNLSSKGLRPNVRTYTIMINGLCRRGLL-DEANKLFMEM 514
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QPD + LI L GK+ +A+ +++ M E P+ TY +I G K G+ A+
Sbjct: 135 HQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAI 194
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M + P+ + + ++ L
Sbjct: 195 RLLRSMEQGNCQPDVVVYTSIIDSLC 220
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD I+ ++ AL + GK+ EA V + M + P+ TY ++ G +A+ +
Sbjct: 277 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 336
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M+ + P + + L+ G
Sbjct: 337 FDTMVHNGYAPNVISYNTLING 358
Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 39/90 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+Q QPD +Y +I +L + ++ EA ++ M + + PD TYT +I
Sbjct: 201 EQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEW 260
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ MI S P+ + F ++ L
Sbjct: 261 KHVTTLLNQMINSKIMPDVVIFSTVVDALC 290
>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g31840
gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 840
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G++ EA ++ + K + P TY+ +I GF K G+ +
Sbjct: 389 PNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL 448
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
YEDMIK PP+ + + +L+ GL L+
Sbjct: 449 YEDMIKMGYPPDVVIYGVLVDGLSKQGLM 477
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ K+F+ ++++ P Y +I L + G+++EA ++ L PD Y +I
Sbjct: 725 SFKLFEEMQEKG-ISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILI 783
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218
RG+ K G +A +YE M+++ P++L R L
Sbjct: 784 RGYCKVGRLVEAALLYEHMLRNGVKPDDLLQRAL 817
Score = 42.7 bits (99), Expect = 0.16, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D ++ I ++G + A V++ M + + P+ TYT +I+G +DG +A +Y
Sbjct: 355 DVVVFSSTIDVYVKSGDLATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMY 414
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
++K P + + L+ G LRS +E++ K Y P I+G L
Sbjct: 415 GQILKRGMEPSIVTYSSLIDGFCKCGNLRSGFAL-YEDMI--KMGYPPDVVIYGVL 467
Score = 38.1 bits (87), Expect = 3.4, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 40/82 (48%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
++ LI R + +EA++V+ M + PD T+T V+R + +G +A+ ++ M
Sbjct: 498 VFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRM 557
Query: 204 IKSPDPPEELPFRILLKGLLPH 225
K P+ L + L+ H
Sbjct: 558 FKMGLEPDALAYCTLIDAFCKH 579
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + K + QP IY L+ + GK+ +A+ ++E M++ P TYTE+I
Sbjct: 252 AIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
+G K G +A Y+DM++ P+
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPD 337
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ ++ Q PD Y Y L+ + + G +NEA + M + D ++ ++
Sbjct: 498 AVDLFNEMKNQG-SGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF + G P A+ ++E + S P+ + + LL G H + + + E+ +
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLL-GCFAHAGMFEEAARMMREMKDKGF 615
Query: 245 AYDP 248
YD
Sbjct: 616 EYDA 619
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
V +++ E Q E + V ++ + D + PD Y LI + + G+ + A+++++ M+
Sbjct: 203 VILMLMQEGQHEKVHEVYT-EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMK 260
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P + YT ++ + K G A++++E+M ++ P + L+KGL
Sbjct: 261 DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGL 313
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAM 197
+P + Y +I+ L + G+ + +V+ M E D FPD+ TY+ +I + K G A+
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
++++M + P E + LL
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLL 275
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +++ P Y Y +LI L + G+++EA ++ M ++ L PD ++
Sbjct: 287 ALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLM 345
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G + N++ +M P + + ++K L S+V F+++
Sbjct: 346 NILGKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400
>gi|225439751|ref|XP_002273172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09650,
chloroplastic-like [Vitis vinifera]
Length = 749
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED---LFPDSQTYTEVIRGFLKDGSPA 194
Y PD+ IY L+ + G++ + +++ E+MR +D PD TYT V+ +K GS
Sbjct: 377 YAPDSRIYTTLMKGYMKEGRVTDTVRMLEAMRHQDDSTSQPDHVTYTTVVSALVKAGSMD 436
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
A + +M + P + + ILLKG
Sbjct: 437 RARQVLAEMTRIGVPANRVTYNILLKG 463
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 125 AVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
V++ + +R QD QPD Y ++ AL + G M+ A QV M + + + TY
Sbjct: 400 TVRMLEAMRHQDDSTSQPDHVTYTTVVSALVKAGSMDRARQVLAEMTRIGVPANRVTYNI 459
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLL 223
+++G+ + A + +M+ P+ + + L+ G +
Sbjct: 460 LLKGYCEQLQIDKAKELVREMVDDEGIVPDVVSYNTLIDGCI 501
>gi|115449175|ref|NP_001048367.1| Os02g0793200 [Oryza sativa Japonica Group]
gi|113537898|dbj|BAF10281.1| Os02g0793200 [Oryza sativa Japonica Group]
gi|215704904|dbj|BAG94932.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 473
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ +PDA Y LI AR G A+ +++ M + + PDS +Y ++ + G P
Sbjct: 85 REAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRSGIAPDSWSYNPLMHCLFRSGHP 144
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA ++ DM + P + + LL G+
Sbjct: 145 EDAYRVFADMAEKGIAPCDTTYNTLLDGM 173
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A R + + V MR+ + PD+ TY +I G + G P A+++
Sbjct: 56 PDVVTYNTLLAAHCRAAGLEAGLVVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDL 115
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+++M++S P+ + L+ H L RS +D +F +
Sbjct: 116 FDEMLRSGIAPDSWSYNPLM-----HCLFRSGHPEDAYRVFAD 153
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
I A+ +FD + + PD++ Y L+ L R+G +A +V+ M ++ + P TY
Sbjct: 110 IHALDLFDEMLRSG-IAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNT 168
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++ G + G +A ++ + ++ P + + ++ GL
Sbjct: 169 LLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCS 210
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IF + ++ +PD Y + LI L ++ A+ + M E + ++ TY +I
Sbjct: 478 AVEIFREMPRKGC-KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLI 536
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
FL+ G +A + +M+ P +E+ + L+KGL + K + FE++ + H
Sbjct: 537 NAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEV-DKARSLFEKMLRDGH 595
Query: 245 A 245
A
Sbjct: 596 A 596
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ IY+ LI +L++ ++NEA+Q+ E M PD++T+ +VI G K +A +
Sbjct: 250 PNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKM 309
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M+ P+++ + L+ GL
Sbjct: 310 VNRMLIRGFAPDDITYGYLMNGLC 333
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+++ +R + +P+ Y Y L+ + GK++EA V M + L P++ + +
Sbjct: 407 LALEVLHDMRNKGC-KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCL 465
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I F K+ +A+ I+ +M + P+ F L+ GL
Sbjct: 466 ISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC 505
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI + G + A++V MR + P+ +YT ++ GF K G +A N+
Sbjct: 387 PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNV 446
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M P + F L+
Sbjct: 447 LNEMSADGLKPNTVGFNCLISAFC 470
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L R G++ + + ++ ++ E + PD+ T+ ++ K G DA +
Sbjct: 632 PDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLL 691
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ I+ P + ILL+ ++P L
Sbjct: 692 LDEGIEDGFVPNHRTWSILLQSIIPQETL 720
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ Y LI A R G++ EA ++ M + D TY +I+G + G A ++
Sbjct: 527 ANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+E M++ P + IL+ GL ++ V+
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA + D+I+ L + ++NEA ++ M PD TY ++ G K G A ++
Sbjct: 285 PDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDL 344
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ + K PE + F L+ G + H L
Sbjct: 345 FYRIPK----PEIVIFNTLIHGFVTHGRL 369
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D + P LI L R+G + EA++ + M PD T+ +I G + G
Sbjct: 592 RDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIE 651
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D + ++ + PP+ + F L+ L
Sbjct: 652 DGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAM 197
+P+ I+ LI G++++A V M + PD TY +I G+ K+G A+
Sbjct: 350 KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLAL 409
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ DM P + IL+ G
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFC 435
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + K + QP IY L+ + GK+ +A+ ++E M++ P TYTE+I
Sbjct: 252 AIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
+G K G +A Y+DM++ P+
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPD 337
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ ++ Q PD Y Y L+ + + G +NEA + M + D ++ ++
Sbjct: 498 AVDLFNEMKNQG-SGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIIL 556
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF + G P A+ ++E + S P+ + + LL G H + + + E+ +
Sbjct: 557 NGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLL-GCFAHAGMFEEAARMMREMKDKGF 615
Query: 245 AYDP 248
YD
Sbjct: 616 EYDA 619
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
V +++ E Q E + V ++ + D + PD Y LI + + G+ + A+++++ M+
Sbjct: 203 VILMLMQEGQHEKVHEVYT-EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMK 260
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P + YT ++ + K G A++++E+M ++ P + L+KGL
Sbjct: 261 DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGL 313
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAM 197
+P + Y +I+ L + G+ + +V+ M E D FPD+ TY+ +I + K G A+
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
++++M + P E + LL
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLL 275
Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 48/106 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ P Y Y +LI L + G+++EA ++ M ++ L PD ++ K G
Sbjct: 295 KRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRV 354
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ N++ +M P + + ++K L S+V F+++
Sbjct: 355 EELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400
>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Vitis vinifera]
Length = 708
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 88 DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
D+ +L + H L+ + ++ RQ +T ++ F+ + K + PD + Y
Sbjct: 452 DEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG-FTPDIHSYTT 510
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI R +M E+ +++E L P +TYT +I G+ + G+ + A+ +++ M
Sbjct: 511 LISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHG 570
Query: 208 DPPEELPFRILLKGLL 223
P+ + + L+ GL
Sbjct: 571 CAPDSITYGALISGLC 586
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + D Y+P+ + Y +I + K+N A + M+++ L P++ TYT +I
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G+ A + + M K P + ++ GL
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLC 446
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I R G + A+++++ M PDS TY +I G K+ DA N+
Sbjct: 538 PTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNL 597
Query: 200 YEDMIKSPDPPEELP 214
Y+ M+ P E+
Sbjct: 598 YDAMMDKGLSPCEVT 612
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D++ K+ + P+ Y Y +I L + G ++EA ++ + L D TYT ++
Sbjct: 419 AYELMDLMGKEG-FSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM 477
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ ++ + M+K P+ + L+ R K K+ E LF E
Sbjct: 478 SVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIS-----TFCRQKQMKESERLFEE 530
>gi|297803426|ref|XP_002869597.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315433|gb|EFH45856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 538
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ +++ K + QP+ + LI R K+ EA +V+ M+ +L P++ TY +I
Sbjct: 292 ALKLKNMMGK-NGLQPNVVTFNTLIHGFCRAVKLQEASKVFGEMKALNLPPNTVTYNTLI 350
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELF 240
G+ + G A YEDM+ + + L + L+ GL R + D E L
Sbjct: 351 NGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLV 410
Query: 241 PEKHAY 246
P +
Sbjct: 411 PNSSTF 416
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D Y LI+ L + K +A Q + + KE+L P+S T++ +I G +
Sbjct: 375 QRDILTYNTLILGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRRNADRGFE 434
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ MI+S P E F IL+
Sbjct: 435 LYKSMIRSGCHPNEQTFNILISAFC 459
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 104 LLKMDIVAVLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
L + I LIE +E + A +F I + Q D Y LI L+R GKM+EA
Sbjct: 553 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAF 611
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ ++++ L P++ TY +I G K G+ A + E+M P+ + + IL+ GL
Sbjct: 612 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 671
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
++I KQ + P+ Y LI + G M EA ++W M++ ++ P ++TYT ++ G+
Sbjct: 790 EMIEKQ--FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 847
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ ++ ++E+M+ P+++ + +++
Sbjct: 848 IGNMSEVSALFEEMVAKGIEPDKMTYYVMI 877
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
I+ L+ + + GKM +A+++ + M ++ + PDSQTY+ +I G + + A A + ++M
Sbjct: 348 IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEM 407
Query: 204 IKSPDPPEELPFRILLKGL 222
K P L + +++ GL
Sbjct: 408 KKRKLAPTVLTYSVIINGL 426
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ A +++ + L P+ TY ++ G+ K +P A +
Sbjct: 659 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 718
Query: 200 YEDMIKSPDPPEELPFRILL 219
E+M+ PP+ + ++L
Sbjct: 719 LEEMLLRGVPPDAFIYNVIL 738
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A +Y L+ A A+ G++ E+ + E MR++ + PD Y +I GF K +A
Sbjct: 448 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 507
Query: 199 IYEDMIK 205
+M++
Sbjct: 508 YLMEMLE 514
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+VLI L R + A IF ++++ P+A+ Y LI + G +++A Q+ E M
Sbjct: 595 SVLIHGLSRNGKMHEAFGIFSELQEKGLL-PNAFTYNSLISGSCKQGNVDKASQLLEEMC 653
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ + PD TY +I G K G A N+++D+
Sbjct: 654 IKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 687
Score = 40.8 bits (94), Expect = 0.58, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R EE+ + I + +R+Q PD + Y LII + +M EA M + L P++
Sbjct: 466 RVEESRM---ILERMREQG-ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNA 521
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY I G+ K G A + +M+ P + L++G
Sbjct: 522 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 565
Score = 40.4 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 17/101 (16%)
Query: 140 PDAYIYKDLIIALARTGK-----------------MNEAMQVWESMRKEDLFPDSQTYTE 182
PD Y Y ++I A + G ++EA+++ SM + L PD TY
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDI 281
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I GF + +A + +MI PE + + L+ G +
Sbjct: 282 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFM 322
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+IY ++ + K +A+ +++ M E F + ++ +I G+ K G +A ++
Sbjct: 729 PDAFIYNVILNFCCKEEKFEKALDLFQEML-EKGFASTVSFNTLIEGYCKSGKLQEANHL 787
Query: 200 YEDMIKSPDPPEELPFRILL 219
E+MI+ P + + L+
Sbjct: 788 LEEMIEKQFIPNHVTYTSLI 807
Score = 37.0 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A+ Y I ++ G+M A + + M + P+ YT +I G K+G+ +A +
Sbjct: 518 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFS 577
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ ++ + + +L+ GL
Sbjct: 578 VFRFILSRRVLQDVQTYSVLIHGL 601
>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 597
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 5/142 (3%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
VLI++ +E ++ K + Q P+ Y LI G +N A +++ SM +
Sbjct: 309 VLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSK 368
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231
PD YT +I G+ K +AM +Y M++ P+ + LL GL K
Sbjct: 369 GCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQ----GGK 424
Query: 232 VKKDFEELFPEKHAYDPPEEIF 253
V D ++LF Y P +++
Sbjct: 425 V-GDAKKLFGVMKVYGIPGDLY 445
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI +T K+ EAM+++ M + PD +TY ++ G + G DA
Sbjct: 371 EPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKK 430
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE--ELFPEKHAYD 247
++ M P + + I L GL + L FE ELF + +Y+
Sbjct: 431 LFGVMKVYGIPGDLYIYGIFLNGLCKNGCL-------FEAMELFNKLKSYN 474
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+ ++ + + D + LI L + GK+ A +++E + +E+L PD TY +I
Sbjct: 463 AMELFNKLKSYNI-KLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMI 521
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
F + G A +++ M K+ P+++ + L++G
Sbjct: 522 HEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRG 558
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + Q QP+ + LI L + GK+ EA + E M + + P+ TY +I
Sbjct: 288 AKRLFNEMVNQG-VQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLI 346
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF G A ++ M P+ + + +L+ G
Sbjct: 347 EGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLING 383
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD L+ L ++ E + V + + PD TYT +I+G + + A
Sbjct: 128 SPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAAL 187
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M K P + + L+KGL
Sbjct: 188 LFTRMQKLGCTPNAITYGTLMKGLC 212
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
Q+ QPD Y +I R G++ +A +++ M K PD TY +IRGF +
Sbjct: 507 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFES 562
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 104 LLKMDIVAVLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
L + I LIE +E + A +F I + Q D Y LI L+R GKM+EA
Sbjct: 562 LPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQ-DVQTYSVLIHGLSRNGKMHEAF 620
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++ ++++ L P++ TY +I G K G+ A + E+M P+ + + IL+ GL
Sbjct: 621 GIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGL 680
Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
++I KQ + P+ Y LI + G M EA ++W M++ ++ P ++TYT ++ G+
Sbjct: 799 EMIEKQ--FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHN 856
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G+ ++ ++E+M+ P+++ + +++
Sbjct: 857 IGNMSEVSALFEEMVAKGIEPDKMTYYVMI 886
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 46/79 (58%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
I+ L+ + + GKM +A+++ + M ++ + PDSQTY+ +I G + + A A + ++M
Sbjct: 357 IWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEM 416
Query: 204 IKSPDPPEELPFRILLKGL 222
K P L + +++ GL
Sbjct: 417 KKRKLAPTVLTYSVIINGL 435
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 40/80 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + G++ A +++ + L P+ TY ++ G+ K +P A +
Sbjct: 668 PDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQL 727
Query: 200 YEDMIKSPDPPEELPFRILL 219
E+M+ PP+ + ++L
Sbjct: 728 LEEMLLRGVPPDAFIYNVIL 747
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 37/67 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A +Y L+ A A+ G++ E+ + E MR++ + PD Y +I GF K +A
Sbjct: 457 KPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEART 516
Query: 199 IYEDMIK 205
+M++
Sbjct: 517 YLMEMLE 523
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 111 AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+VLI L R + A IF ++++ P+A+ Y LI + G +++A Q+ E M
Sbjct: 604 SVLIHGLSRNGKMHEAFGIFSELQEKGLL-PNAFTYNSLISGSCKQGNVDKASQLLEEMC 662
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ + PD TY +I G K G A N+++D+
Sbjct: 663 IKGINPDIVTYNILIDGLCKAGEIERAKNLFDDI 696
Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y +I L R ++EA+++ SM + L PD TY +I GF + +A +
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+MI PE + + L+ G +
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFM 331
Score = 40.8 bits (94), Expect = 0.59, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R EE+ + I + +R+Q PD + Y LII + +M EA M + L P++
Sbjct: 475 RVEESRM---ILERMREQG-ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNA 530
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
TY I G+ K G A + +M+ P + L++G
Sbjct: 531 HTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 574
Score = 38.1 bits (87), Expect = 3.5, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y ++I A + G + +A +V M ++ P+ TY +I G + +A+ +
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIEL 272
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M+ P+ + IL+ G
Sbjct: 273 KRSMVDKGLVPDLYTYDILINGF 295
Score = 38.1 bits (87), Expect = 4.0, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+IY ++ + K +A+ +++ M E F + ++ +I G+ K G +A ++
Sbjct: 738 PDAFIYNVILNFCCKEEKFEKALDLFQEML-EKGFASTVSFNTLIEGYCKSGKLQEANHL 796
Query: 200 YEDMIKSPDPPEELPFRILL 219
E+MI+ P + + L+
Sbjct: 797 LEEMIEKQFIPNHVTYTSLI 816
Score = 37.0 bits (84), Expect = 7.4, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++P L+ L + K+ +V++ M + PD TYT +I K G+ DA
Sbjct: 176 FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAK 235
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLL-------RSKVKKDFEELFPEKHAYD 247
+ +M + P + + +++ GL LL RS V K L P+ + YD
Sbjct: 236 RVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKG---LVPDLYTYD 289
Score = 37.0 bits (84), Expect = 7.5, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A+ Y I ++ G+M A + + M + P+ YT +I G K+G+ +A +
Sbjct: 527 RPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFS 586
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++ ++ + + +L+ GL
Sbjct: 587 VFRFILSRRVLQDVQTYSVLIHGL 610
>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
Length = 502
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++ +PDA Y LI AR G A+ +++ M + + PDS +Y ++ + G P
Sbjct: 74 REAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAGIAPDSWSYNPLMHCLFRSGHP 133
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
DA ++ DM + P + + LL G+
Sbjct: 134 EDAYRVFADMAEKGIAPCDTTYNTLLDGM 162
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A R + + V MR+ + PD+ TY +I G + G P A+++
Sbjct: 45 PDVVTYNTLLAAHCRAAGLEAGLAVMGRMREAGVEPDAVTYNSLIAGAARRGLPIHALDL 104
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+++M+++ P+ + L+ H L RS +D +F +
Sbjct: 105 FDEMLRAGIAPDSWSYNPLM-----HCLFRSGHPEDAYRVFAD 142
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
I A+ +FD + + PD++ Y L+ L R+G +A +V+ M ++ + P TY
Sbjct: 99 IHALDLFDEMLRAG-IAPDSWSYNPLMHCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNT 157
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++ G + G +A ++ + ++ P + + ++ GL
Sbjct: 158 LLDGMFRAGYAMNAYRMFRYLQRAGLPVSIVTYNTMINGLCS 199
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD IY LI R GKM +AM V E+M K+ + P+ TY +I GF + G A
Sbjct: 366 EPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASG 425
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ ++M + + + + +L+ L +R VK
Sbjct: 426 LLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVK 460
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
+ T AV++F+ + KQ Y LI L GK+ E +++ E M L P+
Sbjct: 276 KNSNTAAAVRVFEEM-KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNE 334
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
T+ V++GF K G ADA + + M + P+ + + IL+
Sbjct: 335 ITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILI 376
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 7/136 (5%)
Query: 108 DIVAVLIELERQEETILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
+ A+L L + LA K F +R++ PD Y + +I L R G++ +A V +
Sbjct: 158 SVNALLAGLVGAKRVDLAEKAFRSALRRR--VSPDIYTFNTVISGLCRIGQLRKAGDVAK 215
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI---YEDMIKSPDPPEELPFRILLKGLL 223
++ L P TY +I G+ K G + ++ ++M+++ P + F +L+ G
Sbjct: 216 DIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYC 275
Query: 224 PHPLLRSKVKKDFEEL 239
+ + V+ FEE+
Sbjct: 276 KNSNTAAAVRV-FEEM 290
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P A + LI + A++V+E M+++ + TY +I G +G + +
Sbjct: 261 SPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVK 320
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
+ E+M P E+ F +LKG ++
Sbjct: 321 LMEEMEDLGLSPNEITFGCVLKGFCKKGMM 350
Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + D Y LI AL G++ +A+++ + M + L P+ TY +I+GF G+
Sbjct: 431 KEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
A I M K + + + +K
Sbjct: 491 KSAYEIRTRMEKCRKRANVVTYNVFIK 517
>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 445
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 139 QPDAYIYKDLIIALARTGK---MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
PD Y + LI AL + GK ++EAM ++E M+ +++ PD TY +I G K+
Sbjct: 265 NPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLER 324
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ + ++M + P+ + ILL GL
Sbjct: 325 AIALLKEMKEHGIQPDVYSYTILLDGLC 352
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 131 IIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
++RK + + +PD +Y +I +L + + +A V+ M + + PD TYT +I GF
Sbjct: 185 LLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFC 244
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G +A ++ +M P+ F +L+ L
Sbjct: 245 IMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDAL 278
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA---D 195
PD Y LI GKM EA + M+ +++ PD T++ +I K+G +
Sbjct: 230 SPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDE 289
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
AM+++E+M P+ + + L+ GL
Sbjct: 290 AMSLFEEMKHKNMIPDIVTYNSLIDGLC 317
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+Q D Y LI L + G+ ++ + + PD Y +I K+ DA
Sbjct: 159 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDAC 218
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
++Y +MI P+ + + L+ G + K+K+ F L
Sbjct: 219 DVYSEMIVKGISPDVVTYTTLIHGF----CIMGKMKEAFSLL 256
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/99 (21%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++ ++ PD Y LI L + + A+ + + M++ + PD +YT ++
Sbjct: 290 AMSLFEEMKHKNMI-PDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILL 348
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A ++ ++ P+ +++ GL
Sbjct: 349 DGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLC 387
>gi|195616496|gb|ACG30078.1| PPR2 [Zea mays]
Length = 580
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F+++++Q +Y P Y LI+ L R+G+ A Q+++ M ++ P + YT +I
Sbjct: 209 ALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPELYTALI 268
Query: 185 RGFLKDGSPADAMNIYEDMIKSP 207
+ + G +A+ + DM SP
Sbjct: 269 GAYCRSGLLDEALQLLNDMKSSP 291
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 4/112 (3%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+++ L R + A ++FD + +Q QP +Y LI A R+G ++EA+Q+ M+
Sbjct: 232 LIVLLGRSGQPTRAHQLFDEMLQQG-CQPTPELYTALIGAYCRSGLLDEALQLLNDMKSS 290
Query: 172 DLF-PDSQTYTEVIRGFLKDGSPADAMN-IYEDMIKSPDPPEELPFRILLKG 221
L PD TY+ +I+ + D + D + +Y+DM + P + I+L G
Sbjct: 291 PLCQPDVYTYSTIIKACV-DAARFDLTDAMYKDMAERSISPNTVTQNIVLSG 341
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ + ++ QPD Y Y +I A + + +++ M + + P++ T V+
Sbjct: 280 ALQLLNDMKSSPLCQPDVYTYSTIIKACVDAARFDLTDAMYKDMAERSISPNTVTQNIVL 339
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
G+ K G D + DM+ S
Sbjct: 340 SGYGKAGRLDDMERVLSDMLDS 361
>gi|90399325|emb|CAJ86125.1| H0313F03.9 [Oryza sativa Indica Group]
Length = 466
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + G++++A ++ E M+KED+ D+ Y +I G ++ +A N+
Sbjct: 210 PNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIAADAVVYNILISGLCREQRVTEAFNL 269
Query: 200 YEDMIKSPDPPEELPFRILLKGLLP 224
++ M+ P +++LL GLL
Sbjct: 270 FKSMVPKGCYPNSGTYQVLLDGLLS 294
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 8/120 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + ++K+D DA +Y LI L R ++ EA +++SM + +P+S TY ++
Sbjct: 231 AFELCERMQKED-IAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLL 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFE 237
G L G +A + M P F++L+ GL H +L+ V++ ++
Sbjct: 290 DGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQAWD 349
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVKIF+ + +PD + LI L + G ++EA ++ MR+E L PD TY+ +I
Sbjct: 491 AVKIFEELENSSC-KPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLI 549
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F K A ++++M+ P + + ILL L
Sbjct: 550 ECFGKTDKVEMACRLFDEMLAEGCSPNIVTYNILLDCL 587
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 73/144 (50%), Gaps = 1/144 (0%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWY 138
+++G+ D E+ +K L++ +L R + A +++ +R++ Y
Sbjct: 198 ILIGIFGGGADVERCFDLVKKWDLQMNCYTYKCLLQAHLRSNNSNKAFEVYVELRRR-GY 256
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D + Y L+ ALA+ K+++ V++ M+++ PD TYT +IR K G +++
Sbjct: 257 KLDIFAYNMLLDALAKDNKVDQVYMVFKDMKRKHCEPDEYTYTIMIRMTGKIGKADESLT 316
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++++M + P + + +++ L
Sbjct: 317 LFQEMTEKGYTPNLIAYNTMIQAL 340
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 45/87 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQD PD + Y LI + R G++ EA++++E + PD ++ +I K+G
Sbjct: 464 KQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDI 523
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220
+A +++M + P+ + + L++
Sbjct: 524 DEAHMRFKEMREEGLSPDVVTYSTLIE 550
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
D +Y ++ AL + K ++ ++E M+++ PD +Y +I F + G +A+
Sbjct: 434 STDTVMYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVK 493
Query: 199 IYEDMIKSPDPPEELPFRILLKGL-----LPHPLLRSKVKKDFEELFPEKHAYDPPEEIF 253
I+E++ S P+ + F L+ L + +R K ++ E L P+ Y E F
Sbjct: 494 IFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMRE-EGLSPDVVTYSTLIECF 552
Query: 254 GK 255
GK
Sbjct: 553 GK 554
>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A K+ +++ K + +P+ + LI + GK++EA + + M+ ++ P++ TY +
Sbjct: 252 IATKLKNLMGK-NGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTL 310
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK--------D 235
I G+ + G+ A +YE+M+++ + L + L+ GL K KK D
Sbjct: 311 INGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCK----EGKTKKAAFLVKELD 366
Query: 236 FEELFPEKHAYDP 248
E L P Y
Sbjct: 367 KENLVPNASTYSA 379
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 9/117 (7%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A K+++ + + + + D Y LI+ L + GK +A + + + KE+L P++ TY+ +
Sbjct: 322 MAGKVYEEMMR-NGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSAL 380
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
I G + A +Y+ M++S P E F++L + + +DFE F
Sbjct: 381 ISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKN--------EDFEGAF 429
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI + G N A +V+E M + + D TY +I G K+G A +
Sbjct: 302 PNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTYNALILGLCKEGKTKKAAFL 361
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++ K P + L+ G
Sbjct: 362 VKELDKENLVPNASTYSALISG 383
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 127 KIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K +++R+ + P+ Y LI G ++ A ++ M K L P+ T+ +I
Sbjct: 217 KAVEVLREMESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLI 276
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
GF K+G +A + +M P + + L+ G
Sbjct: 277 HGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLING 313
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD++I+ LI A A+ G ++ A ++ MR++ + PD TY+ VI + G D
Sbjct: 385 DGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDD 444
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPH-PLLRSK 231
A+ + MI P + L++G H LL++K
Sbjct: 445 AVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAK 481
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 31/100 (31%), Positives = 52/100 (52%), Gaps = 15/100 (15%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ +R+Q +PD Y +I AL R GKM++A++ + M + + P TY +I
Sbjct: 410 ATIIFNEMREQG-VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLI 468
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
+GF G D++K+ D L +++ KG+ P
Sbjct: 469 QGFCTHG----------DLLKAKD----LVLQMMNKGMRP 494
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI + TG+ EA++V + M + + PD T ++ K G DA ++
Sbjct: 284 PDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDV 343
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++ M + ++I+L G
Sbjct: 344 FDSMAMKGQKTDIFSYKIMLNG 365
Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 39/86 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ AL + M++A + M + + PD+ TY +I G+ G +A+ +
Sbjct: 249 PDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRV 308
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPH 225
+ M P+ + L+ L H
Sbjct: 309 SKKMTSQGILPDVVTLNSLMASLCKH 334
Score = 37.4 bits (85), Expect = 5.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD L+ +L + GK+ +A V++SM + D +Y ++ G+ G D +
Sbjct: 319 PDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTEL 378
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ M+ P+ F +L+K
Sbjct: 379 FNLMLSDGIAPDSHIFNVLIKA 400
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y L+ A +R G + + E M K D TY +I + K G AM I
Sbjct: 389 PDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQI 448
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y DM S P+ + + +L+ L
Sbjct: 449 YRDMKSSGRNPDAVTYTVLIDSL 471
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + Y LI A A+ GK EA + + MR+ + PD Y+ ++ FL+ AM
Sbjct: 493 KPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMG 552
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPL--LRSKVKKDFEEL 239
+Y +MI+ P+ + +++ L+ + + ++ +D EEL
Sbjct: 553 LYHEMIREGFTPDNGLYEVMMHALVRENMWDVVDRIIRDMEEL 595
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F + QPD + Y +I R + +A ++++ + + FPD+ TY ++
Sbjct: 340 AVAVFSDMESHRC-QPDLWTYNAMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLL 398
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
F ++G+ +I E+M+K +E+ + ++
Sbjct: 399 YAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTII 433
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K PDA Y LI +L + K+ EA V M + P TY+ +I + K G
Sbjct: 453 KSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAYAKAGKR 512
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+A + M +S P+ L + ++L
Sbjct: 513 EEAEETFNCMRRSGIKPDRLAYSVML 538
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 35/73 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ D Y +I + G+ ++AMQ++ M+ PD+ TYT +I K +A
Sbjct: 422 FGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAA 481
Query: 198 NIYEDMIKSPDPP 210
N+ +M+ + P
Sbjct: 482 NVMSEMLDAGVKP 494
>gi|356511125|ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
chloroplastic-like [Glycine max]
Length = 503
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 9/187 (4%)
Query: 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDW 137
V L + +D+E L K + +V ++ + EL + + + +++F ++KQ W
Sbjct: 45 LVRLLTSKISNDKEPLLKTLNKYVKQVRTQHCFLLFEELAKHDNWLQCLEVFRWMQKQRW 104
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL----KDGSP 193
Y D IY LI + + G+ AM ++ MR PD+ Y +I L K +
Sbjct: 105 YIADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSRDKTKAL 164
Query: 194 ADAMNIYEDMIK-SPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE--LFPEKHAYDP 248
A A+ ++ M P + + ILL+ + + + KD +E + P+ + ++
Sbjct: 165 AKAIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNG 224
Query: 249 PEEIFGK 255
+ +GK
Sbjct: 225 VMDAYGK 231
>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
sativus]
Length = 686
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + + + PD + LI + G +++ ++++ M + + D+ TY +I
Sbjct: 563 ATQMFDSMGSKS-FSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLI 621
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
GF K + A++I+++MI S P+ + R +L GL
Sbjct: 622 YGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGL 659
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D R + +PD Y LI L GK EA +++E M + PD+ TY+ +I G K
Sbjct: 497 DASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCK 556
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+A +++ M P+ + F L+ G ++ + D ELF E
Sbjct: 557 QSRLDEATQMFDSMGSKSFSPDVVTFNTLITG-----YCKAGMVDDGLELFCE 604
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 125 AVKIFDIIRKQDWYQ---PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
V +++RK + P+ IY +I L + G+ ++A ++ M+++++FPD TY
Sbjct: 233 TVSALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYN 292
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+I GF G +DA + ++M++ P+ + F L+ +
Sbjct: 293 CMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFV 334
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI R ++++ +++ M + L ++ TYT +I GF + G A +
Sbjct: 390 SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQD 449
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ ++MI S P + LL GL + L KD E+F
Sbjct: 450 LLQEMISSGVCPNVVTCNTLLDGLCDNGKL-----KDALEMF 486
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I L + +++EA Q+++SM + PD T+ +I G+ K G D + +
Sbjct: 542 PDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLEL 601
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +M + + + + L+ G
Sbjct: 602 FCEMGQRGIVADAITYITLIYGF 624
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I +G+ ++A Q+ + M + + PD T++ +I F+K+G +A +
Sbjct: 286 PDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEEL 345
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
Y++M+ P + + ++ G
Sbjct: 346 YDEMLPRSIIPSTVTYSSMIDGFC 369
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 19/122 (15%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL---- 173
++ D+ QD Q P+ L+ L GK+ +A++++++M+K +
Sbjct: 439 CQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 498
Query: 174 -------FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226
PD QTY +I G + +G +A +YE+M P+ + + ++ GL
Sbjct: 499 SRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558
Query: 227 LL 228
L
Sbjct: 559 RL 560
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + LI A + GK EA ++++ M + P + TY+ +I GF K A +
Sbjct: 320 NPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEH 379
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ P+ + F L+ G
Sbjct: 380 MFYLTPTKGCSPDIITFNTLIAG 402
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD + Y L+ + R G ++EA+++ M E + P+ TYT ++ GF G +
Sbjct: 217 DGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 276
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + + M + P E +R L+ G+
Sbjct: 277 AFRMLDKMKEKGVAPSEATYRTLVHGVF 304
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 8/120 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F ++K PD Y Y L+ + R G ++EA + +MR+ PD +++ ++
Sbjct: 495 AVDLFCEMKKLGC-SPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIIL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFE 237
G K G P A+ ++ M +S P+ + + +L L + L+R K FE
Sbjct: 554 NGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKGFE 613
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+++ +LER + A ++FD + K++ P IY ++ + K+ A+++ E M
Sbjct: 236 LISAFGKLERYD---FAFRLFDEM-KENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEM 291
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ + P TYTE+I+G K G DA +++ +M+K P+
Sbjct: 292 KGKGCAPTVFTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPD 334
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D +PD + +LI L R G++ +A++++ M P+ TY VI+ + +PA
Sbjct: 328 KDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVTYNTVIKAIFESKAPA 387
Query: 195 -DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A +E M + P + IL+ G
Sbjct: 388 SEAALWFEKMKANGIAPSSFTYAILIDGFC 417
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 4/118 (3%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ + A +Y +I G++++A+ ++ M+K PD TY ++ G ++ G
Sbjct: 468 KENCGRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMI 527
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELFPEKHAYD 247
+A ++ +M ++ P+ I+L GL P + K E+ P+ +Y+
Sbjct: 528 DEAHSLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYN 585
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++++ I + PD Y LI A + + + A ++++ M++ L P + YT ++
Sbjct: 215 ELYNEICSEGNCSPDTITYSALISAFGKLERYDFAFRLFDEMKENGLHPTEKIYTTILAM 274
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ K A+ + E+M P + L+KGL
Sbjct: 275 YFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGL 310
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 53/112 (47%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L + ++ A IF + + PD Y LI + ++ A ++++ M
Sbjct: 126 SLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMID 185
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P+ TY + G ++ G ADA +YE+MI + P+ + + L+ G
Sbjct: 186 LNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGF 237
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ GK+ +A++V++ M + PD Y +++GF + G P +A +
Sbjct: 295 PDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQL 354
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ M+ P+ + I++ GL
Sbjct: 355 FQVMVSRECKPDTVSHNIMIDGL 377
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 129 FDIIRKQD------------WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
F + RK D +P+A Y L+ L + K +EA +++ M + PD
Sbjct: 237 FSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPD 296
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT ++ GF G A+ ++++M+ P+ + + LLKG
Sbjct: 297 KVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFF 343
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 18/136 (13%)
Query: 126 VKIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
KI ++ R + Y+ P+ Y + L R G++ +A V+E M PD
Sbjct: 168 CKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDV 227
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRS 230
TY+ +I GF A ++E MI P + + LL GL H L R
Sbjct: 228 ITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRK 287
Query: 231 KVKKDFEELFPEKHAY 246
V++ + P+K Y
Sbjct: 288 MVERGCD---PDKVTY 300
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y LI + K ++A +++E+M P++ TY ++ G K+ P +A
Sbjct: 224 SPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHE 283
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
++ M++ P+++ + LL G + V+ F+E+ + H DP
Sbjct: 284 LFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEV-FDEMVSKGH--DP 330
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV++FD + + + PD Y L+ R GK EA Q+++ M + PD+ ++ +I
Sbjct: 316 AVEVFDEMVSK-GHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMI 374
Query: 185 RGFLKDGSPADAMNIYEDMIKSPD-PPEELPFRILLKGLLPHPLLRSKVKKDFEE----- 238
G K DA+ ++E M + P+ + + L+ GL L S+ K F+E
Sbjct: 375 DGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL-SEAMKVFKEIDRLK 433
Query: 239 LFPEKHAYD 247
L P+ HA++
Sbjct: 434 LSPDPHAFN 442
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
A ++F ++ ++ +PD + +I L++ ++++A++V+E M ++ PD TY +
Sbjct: 351 ARQLFQVMVSREC-KPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSL 409
Query: 184 IRGFLKDGSPADAMNIYEDMIK---SPDPPEELPFRILLKGL 222
I G + ++AM +++++ + SPDP F +LL+ +
Sbjct: 410 IFGLCGEQRLSEAMKVFKEIDRLKLSPDPH---AFNVLLEAM 448
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ Y L+ +L + K+++A ++ +M E + PD +Y+ +I GF K A
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEK 178
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ MI P + L GL+
Sbjct: 179 LYKQMIDLNCVPNVTTYNAFLNGLM 203
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI + K+N A+ ++ M+KE++ P+ T+ ++ GF K+G DA +
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M+K P+ + + L+ G
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDG 315
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
+L++ +E + K+ I +D +PD Y L+ K+N+A +++SM
Sbjct: 276 ILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASG 335
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + Q YT ++ GF K +A+N++E+M P + + L+ GL
Sbjct: 336 GVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLC 387
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 46/84 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y ++ AL + +++A+ + +++ + + PD TYT +I+G + G DA N+
Sbjct: 409 PNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNV 468
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ED++ + + ++++G
Sbjct: 469 FEDLLVKGYNLDVYAYTVMIQGFC 492
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ ++K++ P+ Y + L+ + GK+N+A V M K+D+ PD TY ++
Sbjct: 255 AIDLFNKMKKENI-NPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLM 313
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
G+ A +I++ M + ++ G ++ + FEE+
Sbjct: 314 DGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINL-FEEM 367
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP+A +Y +I + + +N+A ++ M + + PD TY +I GF A++
Sbjct: 198 QPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAID 257
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ M K P F IL+ G
Sbjct: 258 LFNKMKKENINPNVYTFNILVDGFC 282
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ IY ++ + ++EA+ ++E MR + P+ TY+ +I G K G A+ +
Sbjct: 339 ANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKL 398
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M PP + + +L L
Sbjct: 399 VDEMHDRGQPPNIVTYSSILDALC 422
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K +PD Y Y LI L ++G++ +A V+E + + D YT +I+GF G
Sbjct: 438 KDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFF 497
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+ + M + P + +++ L
Sbjct: 498 DKALALLSKMEDNGCIPNAKTYELVILSLF 527
>gi|147772266|emb|CAN67349.1| hypothetical protein VITISV_018089 [Vitis vinifera]
Length = 483
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+ +++ +PD + LI R GK++EA +++ M+ D+ P++ TY +I G+ +
Sbjct: 240 ILMEKNGVRPDDVTFNTLINGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQV 299
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK--------DFEELFPE 242
G+ ++++M+++ + L + L+ GL + + KK D E L P
Sbjct: 300 GNSEMGGRLHDEMLRNGIKADILTYNALILGL----CMEGRTKKAAYLVKELDRENLVPN 355
Query: 243 KHAYD 247
+
Sbjct: 356 SSTFS 360
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 12/122 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + + P Y LI G +N M++ M K + PD T+ +I
Sbjct: 200 AIEVFKKMETMG-FSPTITSYNTLIAGYCNKGLLNSGMKLKILMEKNGVRPDDVTFNTLI 258
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-----------LPHPLLRSKVK 233
GF + G +A I+ +M + P + + L+ G L +LR+ +K
Sbjct: 259 NGFCRGGKLHEANKIFSEMKANDVVPNTITYNTLINGYSQVGNSEMGGRLHDEMLRNGIK 318
Query: 234 KD 235
D
Sbjct: 319 AD 320
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y LI+ L G+ +A + + + +E+L P+S T++ +I G + A
Sbjct: 318 KADILTYNALILGLCMEGRTKKAAYLVKELDRENLVPNSSTFSALITGQCVRKNSERAFQ 377
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+Y+ MI+S P F++L+
Sbjct: 378 LYKSMIRSGCHPNYHTFKMLI 398
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Query: 127 KIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K DI++ + ++ D Y LI L + G+ A+++ MR + + + Y VI
Sbjct: 553 KAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVI 612
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + + DAMN++ +M + +PP+ ++I+ +GL
Sbjct: 613 QSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLC 651
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + L+ AL R ++ A+ + E M + PD T+T +++GF+++GS A+
Sbjct: 182 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALR 241
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M++ P ++ +L+ G
Sbjct: 242 VKARMLEMGCSPTKVTVNVLING 264
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI+AL ++ EA+ + + + L PD T+ +I K G P A+ +
Sbjct: 358 PDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL 417
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+M S P+E+ + L+ L
Sbjct: 418 FEEMKSSGCTPDEVTYNTLIDNLC 441
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y + LI AL + G A++++E M+ PD TY +I G A++
Sbjct: 392 SPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALD 451
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M + P + + ++ GL
Sbjct: 452 LLKEMESAGCPRSTVTYNTIIDGLC 476
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
+ ++PD Y + L + G + A++V + M +E PD TY V+ K+G +
Sbjct: 284 NGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 343
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A I M++ P+ F L+ L
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALC 371
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 13/132 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ Q+ + PD + Y ++ L + G++ EA + M + PD T+ +I
Sbjct: 309 ALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLI 367
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELF 240
+A+++ + P+ F IL+ L P LR FEE+
Sbjct: 368 VALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRL-----FEEM- 421
Query: 241 PEKHAYDPPEEI 252
K + P+E+
Sbjct: 422 --KSSGCTPDEV 431
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D +Y L+ L KM V+ M + + PD T+ +++ + A+
Sbjct: 147 QADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVL 206
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ E+M S P+E F L++G + +++ ++
Sbjct: 207 MLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALR 241
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIR-KQDWYQPDA 142
+ D +K ++T ++D+V LI L + T +A+K+ +R K P A
Sbjct: 548 QGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKA 607
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK-DGSPADAMNIYE 201
Y +I +L R +AM ++ M + PD+ TY V RG + GS +A +
Sbjct: 608 Y--NPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLL 665
Query: 202 DMIKSPDPPEELPFRILLKGLL 223
+M+ PE FR+L +GLL
Sbjct: 666 EMVDKGFIPEFSSFRMLAEGLL 687
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+++F+ + K PD Y LI L GK+ +A+ + + M + TY +
Sbjct: 413 LALRLFEEM-KSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTI 471
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I G K +A +++ M + F L+ GL
Sbjct: 472 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLC 511
>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 376
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+++++ + K+ ++PD ++ LI L GK A+ ++ M + + P+ T +
Sbjct: 252 MALQLWNQVTKKG-FKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTL 310
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
+ GF KDG+ +A+ I+ ++K+ P+ + + I LKGL
Sbjct: 311 MEGFYKDGNVRNALVIWARILKNELQPDIISYNITLKGLCS 351
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y +I AL + K+ +A+ V M + P++ Y +I+G + DA+ I+
Sbjct: 128 DAFAYSAMINALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIGASKRDDAVRIF 187
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+M + PP + IL+ GL
Sbjct: 188 REMGTTDCPPNIATYSILIDGLC 210
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA +Y ++ R G+M + ++WE M +E ++ ++RG + +AM+
Sbjct: 22 SPDAVVYNAMLNGFYRAGRMKDCFELWEMMGREG-SRSVASFNIMMRGLFDNRKVEEAMS 80
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
I+E M KS + + + IL+ G + +
Sbjct: 81 IWELMTKSGFVEDSVTYGILVHGFCKNGYIN 111
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ ++Y LI L K ++A++++ M D P+ TY+ +I G K +A +
Sbjct: 161 KPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSILIDGLCKGERFGEAYD 220
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M++ P + + +L+KGL
Sbjct: 221 LVKEMLEKGLNPSVITYSLLMKGLC 245
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ I++++ K + + D+ Y L+ + G +N+++ + E ++ D+ Y+ +I
Sbjct: 78 AMSIWELMTKSGFVE-DSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYSAMI 136
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
K+ A+++ MI+S P + L+KGL+ + + D +F E
Sbjct: 137 NALCKESKLEKAVSVLNGMIRSGCKPNTHVYNALIKGLIG-----ASKRDDAVRIFREMG 191
Query: 245 AYDPPEEI 252
D P I
Sbjct: 192 TTDCPPNI 199
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 18/103 (17%)
Query: 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216
K+ EAM +WE M K DS TY ++ GF K+G +++I E + + +
Sbjct: 74 KVEEAMSIWELMTKSGFVEDSVTYGILVHGFCKNGYINKSLHILEIAEQKGGVLDAFAYS 133
Query: 217 ILLKGLLP-----------HPLLRSKVKKDFEELFPEKHAYDP 248
++ L + ++RS K P H Y+
Sbjct: 134 AMINALCKESKLEKAVSVLNGMIRSGCK-------PNTHVYNA 169
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y L+ L K+ A+Q+W + K+ PD Q + +I G G A++
Sbjct: 231 NPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALS 290
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+Y DM + P + L++G +R+
Sbjct: 291 LYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRN 322
>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1128
Score = 53.9 bits (128), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+ ++D K D D+ Y LI L + G+++E M+VWE M+++ + PD Y V
Sbjct: 682 LALVVYDDF-KSDGLVEDSVTYMILIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATV 740
Query: 184 IRGFLKDGSPADAMNIYEDM 203
+ G K G A+ ++++M
Sbjct: 741 VTGLCKGGRVAEGYELFKEM 760
Score = 50.4 bits (119), Expect = 8e-04, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 108 DIVAVLIELERQEETI-LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
DI + L R+EE I LA+++F+ ++ + + IY L+ AL + G++ +A+ ++
Sbjct: 875 DISKLFSFLVRREEIITLALEVFEELKVKGYIS--VLIYNTLMEALLKVGEVRKALSLFS 932
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
M+ + PDS TY+ + F++DG+ +A + +I+ P + L KGL
Sbjct: 933 EMKDLNCEPDSNTYSIAVICFVEDGNIQEACVCHNKIIEMSSVPSVAAYCSLTKGL 988
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
++++ + +K + +P A++Y ++ AL +T ++ A+ V++ + + L DS TY
Sbjct: 645 GLRVYHVYQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALVVYDDFKSDGLVEDSVTYMI 704
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+I+G K G + M ++E+M + P+ + + ++ GL
Sbjct: 705 LIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGL 744
Score = 43.5 bits (101), Expect = 0.089, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 38/73 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+D PD Y ++ L + G++ E ++++ M++ + D Y +I F+KDG
Sbjct: 726 KRDGVNPDVMAYATVVTGLCKGGRVAEGYELFKEMKENKVLIDRAIYGVLIEAFVKDGKI 785
Query: 194 ADAMNIYEDMIKS 206
A ++ + ++ S
Sbjct: 786 GSACDLLQGLVDS 798
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+IF + + P+ +Y LI L + KM+ A+++ M+K PD+ TY +I
Sbjct: 418 AVRIFKSMEARG-LAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 476
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G A +++M+++ P+ + IL+ GL
Sbjct: 477 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLC 515
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Query: 113 LIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
L ++ R EE I D++RK + PD Y LI L + + EA ++++ M
Sbjct: 304 LCKMGRLEEAI------DLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMAS 357
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L D+ YT +IRG L+ G A ++Y+ M P+ + ++ GL + +
Sbjct: 358 RGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGA 417
Query: 231 KVKKDFEELFPEKHAYDPPEEIFGKL 256
V+ F+ + E P E ++ L
Sbjct: 418 AVRI-FKSM--EARGLAPNEVVYSAL 440
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI L +TGK+ +A V+++M PD T + +I G K G A+ I+
Sbjct: 363 DTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIF 422
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEI 252
+ M P E+ + L+ GL K+ E L K A+ P+ I
Sbjct: 423 KSMEARGLAPNEVVYSALIHGLCK----ARKMDCALEMLAQMKKAFCTPDTI 470
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L + R +E AV +F+ IRK+ P Y Y +I AL ++GK+NE V++ M +
Sbjct: 578 LCKANRVDE---AVSLFNAIRKEG--MPHPYAYNSIISALIKSGKVNEGQAVYQEMTRW- 631
Query: 173 LFPDSQTYTEVIRGFL 188
PD TY ++ G +
Sbjct: 632 WKPDRVTYNALLNGMI 647
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + PD Y LI L ++G + A ++ M + PD TY +I G K G+
Sbjct: 461 KKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNT 520
Query: 194 ADAMNIYEDMIKS 206
A + +DM S
Sbjct: 521 DAACGVLDDMSSS 533
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI L + +++EA+ ++ ++RKE + P Y +I +K G + +Y++M +
Sbjct: 574 LIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEMTRWW 632
Query: 208 DPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
P+ + + LL G++ + + + L Y PP I KL
Sbjct: 633 -KPDRVTYNALLNGMIGANRMD---RAHYYYLEMTGRGYVPPVSILHKL 677
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
QE L KI + P Y L+ L + G++ EA+ + + PD
Sbjct: 276 QEAVALMEKI-----TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVV 330
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TYT +I G K+ +A ++++M + + + L++GLL
Sbjct: 331 TYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLL 375
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L +GK+ +AM+V + +++ +PD TYT +I K+ AM +
Sbjct: 214 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 273
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M P+ + + +L+ G+ L +K
Sbjct: 274 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIK 307
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A+K+ D +R++ +PD Y L+ L+R GK++EA++ + +
Sbjct: 466 TVIDGLSKVGKTERAIKLLDEMRRKGL-KPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 524
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P++ TY ++ G K A++ MI P E + IL++G+
Sbjct: 525 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 576
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ DI+ + Y PD Y L+ AL + GK++ A+++ + + P TY VI
Sbjct: 410 AIEYLDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 468
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G A+ + ++M + P+ + + L+ GL
Sbjct: 469 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 506
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 108 DIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
DIV +L L + + +AV+I + + + P Y +I L++ GK A+++
Sbjct: 425 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGC-SPVLITYNTVIDGLSKVGKTERAIKL 483
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ MR++ L PD TY+ ++ G ++G +A+ + D+ P + + ++ GL
Sbjct: 484 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 542
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D +++ Y PD Y LI A + + +AM++ + MR + PD TY +I
Sbjct: 235 AMEVLDRQLQKECY-PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI 293
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G K+G +A+ +M P + I+L+ +
Sbjct: 294 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 333
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I +Q PD Y LI ++G+++ A+QV + M ++ PD TY ++R G
Sbjct: 174 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSG 230
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLK 220
AM + + ++ P+ + + IL++
Sbjct: 231 KLKQAMEVLDRQLQKECYPDVITYTILIE 259
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R GK +A V E + + PD TY +I G+ K G +A+ +
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 206
Query: 200 YEDMIKSPD 208
+ M +PD
Sbjct: 207 LDRMNVAPD 215
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ DI+ K + P++ Y L+ + KM+ A++ + M +PD TY ++
Sbjct: 374 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 433
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG A+ I + P + + ++ GL
Sbjct: 434 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGL 471
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L+E R++ A +IF + +Q PD + LI +R +++A+ + M+K
Sbjct: 228 TLLVESCRRDNFSEAKEIFGEMLRQG-VVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKK 286
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L PD+ YT ++ G+ ++G+ +A+ I ++M++ + + + +L GL +L
Sbjct: 287 FGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKML-- 344
Query: 231 KVKKDFEELFPE 242
D ++LF E
Sbjct: 345 ---TDADKLFDE 353
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F + +++ +PD Y LI + G+M +A ++W+ M +FP+ TY +I
Sbjct: 382 ALSLFGTMTQRN-IKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILI 440
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ G ++A +++ MI+ P + ++KG
Sbjct: 441 NAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKG 477
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 4/117 (3%)
Query: 107 MDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
+D++A +L L +++ A K+FD + ++ PD Y + LI + G M +A+
Sbjct: 326 LDVIAYNTILNGLCKEKMLTDADKLFDEMVERGAL-PDFYTFTTLIHGHCQDGNMTKALS 384
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
++ +M + ++ PD Y +I GF K G A +++ MI P + + IL+
Sbjct: 385 LFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILIN 441
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI A G ++EA ++W+ M ++ + P T VI+G+ + G + A
Sbjct: 431 PNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEF 490
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
MI P+ + + L+ G +
Sbjct: 491 LGRMIAKGVAPDHISYNTLINGFV 514
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY L+ R G M EA+++ + M ++ D Y ++ G K+ DA +
Sbjct: 291 PDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKL 350
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+++M++ P+ F L+ G
Sbjct: 351 FDEMVERGALPDFYTFTTLIHG 372
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI R M++A M KE L PD TY V+ GF + G +A +
Sbjct: 501 PDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELV 560
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
MI+ P+ + L+ G
Sbjct: 561 LRKMIEKGINPDRSTYTALING 582
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R + A+KI D + +Q D Y ++ L + + +A ++++ M + PD
Sbjct: 305 RNGNMLEALKIRDEMLEQGCV-LDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDF 363
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
T+T +I G +DG+ A++++ M + P+ + + L+ G
Sbjct: 364 YTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFC 409
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ R G+M EA V M ++ + PD TYT +I G + + +A
Sbjct: 536 PDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRF 595
Query: 200 YEDMIKSPDPPEEL 213
+++M++ P+++
Sbjct: 596 HDEMLQRGFAPDDV 609
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD Y L++ R +EA +++ M ++ + PD +++ +I F ++ A+
Sbjct: 220 SPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALV 279
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ DM K P+ + + +L+ G
Sbjct: 280 YFRDMKKFGLVPDNVIYTVLMHG 302
>gi|8778411|gb|AAF79419.1|AC025808_1 F18O14.1 [Arabidopsis thaliana]
Length = 689
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 125 AVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A +IF R DW +PD + Y L+ R G ++EA+++ + M ++++ P TY +
Sbjct: 170 AEQIFS--RMNDWSLKPDHHTYNTLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNIL 227
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
++G+ + G+ D +++++ M+K +E+ LL+ L
Sbjct: 228 LKGYSRIGAFHDVLSLWKMMLKRGVNADEISCSTLLEAL 266
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 127 KIFDIIRKQD-----WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181
+I D +R D + + I LI ++G++ EA Q++ M L PD TY
Sbjct: 131 QIRDAVRVHDNMIEIGVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYN 190
Query: 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ G+ + G +A+ + + M + P + + ILLKG
Sbjct: 191 TLVDGYCRAGYVDEALKLCDQMCQKEVVPTVMTYNILLKG 230
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F + D + PD Y Y LI A G +N+A + + M + + P+ TY +I
Sbjct: 523 ARKLFSDLLSSDRFIPDEYTYTILIHGCAIAGDINKAFTLRDEMALKGIIPNIVTYNALI 582
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G K G+ A + + + P + + L+ GL+
Sbjct: 583 KGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLV 621
Score = 43.5 bits (101), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y LI L + G ++ A ++ + ++ + P++ TY +I G +K G+ A+AM +
Sbjct: 573 PNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGLVKSGNVAEAMRL 632
Query: 200 YEDMIK 205
E MI+
Sbjct: 633 KEKMIE 638
>gi|15217608|ref|NP_171708.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806399|sp|O81908.2|PPR2_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g02060, chloroplastic; Flags: Precursor
gi|332189251|gb|AEE27372.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 710
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 129 FDIIRKQDWYQ--PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVI 184
F I + + Y PD Y +I L R GK+ A V M K+ D+ P+ +YT ++
Sbjct: 229 FRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLV 288
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
RG+ +A+ ++ DM+ P + + L+KGL
Sbjct: 289 RGYCMKQEIDEAVLVFHDMLSRGLKPNAVTYNTLIKGL 326
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 19/162 (11%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L ++ T +A +FD +R+ PD+Y + LI + ++EA ++++ M
Sbjct: 178 SLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMEL 237
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP--PEELPFRILLKG------- 221
PD TY +I G + G A N+ M+K P + + L++G
Sbjct: 238 YHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMKQEI 297
Query: 222 ----LLPHPLLRSKVKKD---FEEL---FPEKHAYDPPEEIF 253
L+ H +L +K + + L E H YD ++I
Sbjct: 298 DEAVLVFHDMLSRGLKPNAVTYNTLIKGLSEAHRYDEIKDIL 339
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
+VK+F + KQ P + L+ L + G+ A +++ MR+ + PDS T+ +
Sbjct: 157 SVKLFQTM-KQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFNTL 215
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKK 234
I GF K+ +A I++DM P+ + + ++ GL + H +L +KK
Sbjct: 216 INGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKK 273
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F + K+ P +Y K LI R GK A ++ M + + PD +TY +I
Sbjct: 449 AEKVFRQLMKRGVQDPPSY--KTLITGHCREGKFKPAYELLVLMLRREFVPDLETYELLI 506
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G LK G A + + M++S P F +L L
Sbjct: 507 DGLLKIGEALLAHDTLQRMLRSSYLPVATTFHSVLAEL 544
>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + + LI L + K EA+ +++ M E + ++ TY +I FL+ G+ +A+
Sbjct: 509 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 568
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ DM+ P +++ + L+K L
Sbjct: 569 LVNDMLFRGCPLDDITYNGLIKALC 593
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +TG+ EA+ +++ ++ E + PD+ TY +I K+G DA +
Sbjct: 650 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 709
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ S P E+ + IL+ +
Sbjct: 710 LSRGVDSGFIPNEVTWYILVSNFI 733
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ LI L RTG + A++ M L PD TY +I G K G +A+N
Sbjct: 614 NPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALN 673
Query: 199 IYEDMIKSPDPPEELPFRILL-----KGLL--PHPLLRSKVKKDF 236
+++ + P+ + + L+ +G+ H LL V F
Sbjct: 674 LFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF 718
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A +Y+ LI AL++ G++NE +++ E M PD T+ + I G K +A +
Sbjct: 268 PNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 327
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P + +L+ GL
Sbjct: 328 VDRMLLRGFTPNSFTYGVLMHGLC 351
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ Y LI A R G M EA+++ M D TY +I+ + G+ + +
Sbjct: 545 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 604
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+EDM+ P + IL+ GL
Sbjct: 605 FEDMMSKGLNPNNISCNILINGLC 628
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI+ L + G + A ++ M+ + P+ TYT +I F K+G +A N+
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + + L+ L
Sbjct: 465 LDEMSGKGLALNAVGYNCLISALC 488
Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+A Y LI AL + K+ +A+ ++ M + PD T+ +I G K +A+ +Y
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+DM+ + + L+ L ++ +K + LF
Sbjct: 536 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 575
>gi|218195588|gb|EEC78015.1| hypothetical protein OsI_17428 [Oryza sativa Indica Group]
Length = 363
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ L + G++++A ++ E M+KED+ D+ Y +I G ++ +A N+
Sbjct: 210 PNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIAADAVVYNILISGLCREQRVTEAFNL 269
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M+ P +++LL GLL
Sbjct: 270 FKSMVPKGCYPNSGTYQVLLDGLL 293
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 8/119 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ + ++K+D DA +Y LI L R ++ EA +++SM + +P+S TY ++
Sbjct: 231 AFELCERMQKED-IAADAVVYNILISGLCREQRVTEAFNLFKSMVPKGCYPNSGTYQVLL 289
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDF 236
G L G +A + M P F++L+ GL H +L+ V++ F
Sbjct: 290 DGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGF 348
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + + LI L + ++ EA Q+ E M P+ TY+ VI G K G DA +
Sbjct: 265 PNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYEL 324
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M + PP + IL+ GL
Sbjct: 325 FQLMERRNCPPNVVTHNILIDGLC 348
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K ++ +A ++ L+ L G++ EA++ + +M K D PD TYT ++ K G
Sbjct: 84 KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAK-DCAPDVMTYTALVHALCKAGKF 142
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A + +M+ P+ + F L+ GL
Sbjct: 143 DEAQGMLREMVAQGCAPDTVTFSTLIDGLC 172
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ AL + GK +EA + M + PD+ T++ +I G K GS A +
Sbjct: 124 PDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRV 183
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
ED+I+ + F +++ L
Sbjct: 184 LEDVIQRGMGNSDAAFETIIQRLC 207
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L +Q + A ++F ++ +++ P+ + LI L + ++ EA Q++ MR+
Sbjct: 308 VINGLCKQGQVDDAYELFQLMERRNC-PPNVVTHNILIDGLCKAKRIEEARQLYHRMRET 366
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP-DPPEELPFRILLKG 221
PD TY +I G K +A +++ + +S + + L G
Sbjct: 367 GCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 417
>gi|242084014|ref|XP_002442432.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
gi|241943125|gb|EES16270.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
Length = 535
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Query: 106 KMDIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
K + VLI L R+ LA + RK+ D +Y D++ AR G +++ +V
Sbjct: 208 KKEAFTVLIRCLCRRSHVGLASSLLQAARKE-LLGLDCNVYNDVMGGWARFGSVDKLQEV 266
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
W M+++ L P+ ++ +I G + G DA+ +E+M+ P + + L+ +
Sbjct: 267 WTKMQEDGLVPNEVSHCHLIEGLGRAGQTEDALREFENMVHERYGPTTMAYNALIFNFIS 326
Query: 225 HPLLRSKVK 233
L S +K
Sbjct: 327 VGDLDSCIK 335
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 113 LIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
LIE L R +T A++ F+ + + Y P Y LI G ++ ++ ++ M ++
Sbjct: 285 LIEGLGRAGQTEDALREFENM-VHERYGPTTMAYNALIFNFISVGDLDSCIKYYKDMLEK 343
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
+ P+ TY+++++ FLK ADA+ +++DM+
Sbjct: 344 NCPPNIDTYSKMVKAFLKGRRVADALQMFDDML 376
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D P+ + LI L R G+ +A++ +E+M E P + Y +I F+ G
Sbjct: 271 QEDGLVPNEVSHCHLIEGLGRAGQTEDALREFENMVHERYGPTTMAYNALIFNFISVGDL 330
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ Y+DM++ PP + ++K L
Sbjct: 331 DSCIKYYKDMLEKNCPPNIDTYSKMVKAFL 360
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E + A K+F+++ + PD + + L+ + +++EA Q+++ M L PD+ +Y
Sbjct: 351 EVVEARKVFEVMISKGR-MPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSY 409
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+I G + P +A +++DM + PP + + ILL L
Sbjct: 410 NTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCL 451
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD++ + Y+P+ + Y +I L R GK E +++ E M+ PD Y ++
Sbjct: 180 AIELFDVMVARG-YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIV 238
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KD +A++I+ M + P + + L+ GL
Sbjct: 239 DRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGL 276
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 108 DIVA--VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
D+VA VLI++ +E + ++ + +PD Y L+ ++ EA +V+
Sbjct: 300 DLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVF 359
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
E M + PD +++ ++ G+ K +A ++++M P+ + + L+ G
Sbjct: 360 EVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISG---- 415
Query: 226 PLLRSKVKKDFEELFPEKHAYDPP 249
L +++ + EELF + H+ P
Sbjct: 416 -LCQARRPLEAEELFKDMHSNGYP 438
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI + + G+++EA + ++M + + PD TY ++ G+ +A +
Sbjct: 299 PDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKV 358
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E MI P+ F IL+ G
Sbjct: 359 FEVMISKGRMPDVFSFSILVNG 380
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175
L R +T +K+ + ++ +PD IY ++ L + +NEA+ ++ M+ + P
Sbjct: 206 LCRVGKTTEVIKLLEHMKVVGC-EPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILP 264
Query: 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
TYT +I G G +A + +M P+ + F +L+
Sbjct: 265 TVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLI 308
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ Y P+ Y L+ L++ G +++AM ++ +M L PD TY +I G K G
Sbjct: 434 SNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFK 493
Query: 195 DAMNIYEDM-IKSPDP 209
DA ++ ++ +K P
Sbjct: 494 DARELFAELSVKGLQP 509
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + + EA ++++ M P+ TY+ ++ K G AM +
Sbjct: 404 PDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGL 463
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M S P+ + + I++ G+ + KD ELF E
Sbjct: 464 FRAMENSGLKPDLVTYNIMIDGMCKYGKF-----KDARELFAE 501
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ PD Y+Y LI + + G + +A ++ M ++ P+ TYT +I +LK
Sbjct: 249 KRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKV 308
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ A +YE M+ P + + L+ GL
Sbjct: 309 SKANEVYEMMLSKGCTPNIVTYTALIDGLC 338
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K+ + + P+ IY ++I L + GK +EA ++ M ++ P+ TYT +
Sbjct: 467 LALKVLSKMLENSC-APNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAM 525
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
I GF K G + + + M P + +R+L+ LL
Sbjct: 526 IDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLL 570
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K +++IR+ + PD Y +I L K+ +A Q+++ M++ + PD YT +I
Sbjct: 205 KAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLI 264
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
F K G A N +++M + P + + L+ H L+S+ E++
Sbjct: 265 DSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALI-----HAYLKSRKVSKANEVY 315
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+ D + +L ++GK EA+ + E KE+ PD+ YT++I G + +AM
Sbjct: 6 YRMDEFTLGCFAHSLCKSGKWREALSLLE---KEEFVPDTVLYTKMISGLCEASLFEEAM 62
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M S P L +RILL G L
Sbjct: 63 DFLTRMRASSCLPNVLTYRILLCGCL 88
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D P+ Y LI A ++ K+++A +V+E M + P+ TYT +I G K G
Sbjct: 284 ERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKI 343
Query: 194 ADAMNIYEDMIKSPD--PPEELPFRIL 218
A IY+ M K P ++ FR++
Sbjct: 344 EKASQIYKIMKKENVEIPDVDMHFRVV 370
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y LI + GK++EA +V+ +M + P+ TY+ +I KD A+
Sbjct: 411 EPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALK 470
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ M+++ P + + ++ GL
Sbjct: 471 VLSKMLENSCAPNVVIYTEMIDGLC 495
Score = 40.0 bits (92), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y P+ Y Y LI L + +++ A++V M + P+ YTE+I G K G +A
Sbjct: 445 YDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 504
Query: 198 NIYEDMIKSPDPPEELPFRILLKGL 222
+ M + P + + ++ G
Sbjct: 505 KLMVMMEEKGCNPNVVTYTAMIDGF 529
>gi|414591640|tpg|DAA42211.1| TPA: hypothetical protein ZEAMMB73_215753 [Zea mays]
Length = 299
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IFD+ + PDA +Y L+ GKM +A++V+++M + P+ Y ++
Sbjct: 3 AQNIFDL-KVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLV 61
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ K G + ++++ +M++ P + + I++ GL
Sbjct: 62 NGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGL 99
>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 347
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + + LI L + K EA+ +++ M E + ++ TY +I FL+ G+ +A+
Sbjct: 116 KPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALK 175
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ DM+ P +++ + L+K L
Sbjct: 176 LVNDMLFRGCPLDDITYNGLIKALC 200
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L +TG+ EA+ +++ ++ E + PD+ TY +I K+G DA +
Sbjct: 257 PDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLL 316
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ S P E+ + IL+ +
Sbjct: 317 LSRGVDSGFIPNEVTWYILVSNFI 340
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 7/105 (6%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ LI L RTG + A++ M L PD TY +I G K G +A+N
Sbjct: 221 NPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALN 280
Query: 199 IYEDMIKSPDPPEELPFRILL-----KGLL--PHPLLRSKVKKDF 236
+++ + P+ + + L+ +G+ H LL V F
Sbjct: 281 LFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGF 325
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
+ Y LI A R G M EA+++ M D TY +I+ + G+ + +
Sbjct: 152 ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLAL 211
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+EDM+ P + IL+ GL
Sbjct: 212 FEDMMSKGLNPNNISCNILINGLC 235
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI+ L + G + A ++ M+ + P+ TYT +I F K+G +A N+
Sbjct: 12 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 71
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + + L+ L
Sbjct: 72 LDEMSGKGLALNAVGYNCLISALC 95
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+A Y LI AL + K+ +A+ ++ M + PD T+ +I G K +A+ +Y
Sbjct: 83 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 142
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+DM+ + + L+ L ++ +K + LF
Sbjct: 143 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLF 182
>gi|115445705|ref|NP_001046632.1| Os02g0304800 [Oryza sativa Japonica Group]
gi|113536163|dbj|BAF08546.1| Os02g0304800 [Oryza sativa Japonica Group]
Length = 617
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D PD Y LI AL R + EA+QV+E M E P + Y +I F+ G+
Sbjct: 277 EDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYNALIFNFISVGNFD 336
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ Y+DM+ + PP +R +++ LR + D ++F E
Sbjct: 337 RCIKYYKDMLDNNCPPNIDTYRKMIRA-----FLRERKVADALQMFDE 379
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 108 DIVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
+I VLI L R+ LA + R + D ++Y ++I AR G++++ WE
Sbjct: 215 EIFTVLINCLCRRSHVGLASSLLQASRGET-IDLDNHMYNEVIGGWARFGRVDKVEHFWE 273
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+M ++ L PD +Y +I + +A+ ++E M+ P + + L+
Sbjct: 274 TMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHEGYCPTTMAYNALI 326
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 5/130 (3%)
Query: 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAV--LIE-LERQEETILAVKIFDIIRKQ 135
VI G RF +K++ F +T + L D V+ LIE L R A+++F+ + +
Sbjct: 255 VIGGWARF-GRVDKVEHFWETMLEDGLVPDQVSYCHLIEALGRANRAEEALQVFEKMVHE 313
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
Y P Y LI G + ++ ++ M + P+ TY ++IR FL++ AD
Sbjct: 314 G-YCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPNIDTYRKMIRAFLRERKVAD 372
Query: 196 AMNIYEDMIK 205
A+ ++++M+
Sbjct: 373 ALQMFDEMLS 382
>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
Length = 532
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q+ +PD +I+ I A + G+++EAM + MR++ L PD +Y +I G K G
Sbjct: 289 QNGVRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLD 348
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKG 221
AM+ + MI P+ + F L+ G
Sbjct: 349 AAMSQFCQMIDDGLSPDIVVFTNLIHG 375
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +I L + M++A +V M + + PD TY ++ G+L G +A+ I
Sbjct: 154 PDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRI 213
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M + PP + + +L+ L
Sbjct: 214 LKQMSRHGQPPNGVTYSMLIDCLC 237
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
++ R +E +L F+ +R+Q PD Y +I L + G+++ AM + M + L
Sbjct: 307 VKCGRLDEAMLT---FNKMRQQGL-MPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PD +T +I GF G A ++ +M+ P + F ++ L
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKL 411
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 93 LQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDW-----YQPDAYIYKD 147
L + IKT LR + +L L ++ T A+ I +IR W PD + Y
Sbjct: 36 LGQIIKTG-LRANAISFTPILRTLCAEKRTSDAMNI--VIR---WTPKLGCTPDVFSYTV 89
Query: 148 LIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
L+ L K EA+ + M ++ P+ +YT VI GF K+ A ++ +M+
Sbjct: 90 LLKGLCDEKKCEEAVDLIHMMAEDGDHCPPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLD 149
Query: 206 SPDPPEELPFRILLKGLL 223
PP+ + ++ GL
Sbjct: 150 RGIPPDVVTCNSIIDGLC 167
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + + LI L R +M +A+ ++ M E + +S T+ +I FL+ G +A+
Sbjct: 484 KPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALK 543
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ DM+ P +E+ + L+K L
Sbjct: 544 LVNDMLFRGCPLDEITYNGLIKALC 568
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD Y LI L + G++ EA+ ++E ++ E + PDS TY +I ++G+ DA
Sbjct: 623 FSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDAC 682
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
+ +++ P ++ + IL+
Sbjct: 683 FLLYRGVENGFVPNDVTWNILV 704
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y LI AL +TG + + + ++E M ++ L P T +I GF G +A+
Sbjct: 556 DEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFM 615
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
DMI P+ + + L+ GL
Sbjct: 616 RDMIHRGFSPDIVTYNSLINGLC 638
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 40/91 (43%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ Y PD + + L+ L + G A+++ M + P+ TYT +I GF K G
Sbjct: 375 NNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLE 434
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+A I +M+ + + L+ L H
Sbjct: 435 EAGLILREMLTKGFSLNTVGYNALISALCKH 465
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ IY+ LI AL++ +++EA+++ E M PD T+ VI GF + + +
Sbjct: 243 PNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKL 302
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ MI P ++ + L+ GL
Sbjct: 303 VDRMILKGFTPNDMTYGYLMHGLC 326
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 45/96 (46%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI AL + GK++EA+ ++ M + PD T+ +I G + DA+ +Y DM+
Sbjct: 455 YNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMV 514
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
+ F L+ L ++ +K + LF
Sbjct: 515 LEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLF 550
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQ-VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + L+ R G++NEA V++ M PD T++ ++ G K G A+
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ DM P + IL+ G
Sbjct: 404 LVNDMDAKGCKPNLNTYTILIDGFC 428
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
++IRK P LI GK++ A++ M PD TY +I G K
Sbjct: 582 EMIRKG--LTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCK 639
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G +A+N++E + P+ + + L+
Sbjct: 640 RGRIQEALNLFEKLQAEGIQPDSITYNTLI 669
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
++ + LI A R G++ EA+++ M D TY +I+ K G+ + +
Sbjct: 520 ANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGL 579
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+MI+ P + IL+ G
Sbjct: 580 FEEMIRKGLTPSIITCNILINGFC 603
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L + G++++A +++ M L P+ T+T +I G G M I
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE----ELFPEKHAY 246
Y+ M++ P+ + + L+ GL LR K E L P+K Y
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTY 403
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI L + G + EA ++ M + L PD TYT +I G K+G A+
Sbjct: 362 KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALE 421
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I ++M+K + + F L+ G
Sbjct: 422 IRKEMVKEGIELDNVAFTALISGFC 446
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +PD + Y LI + G + A+++ + M KE + D+ +T +I GF ++G
Sbjct: 393 QRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVI 452
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+A +M+++ P++ + +++ G + VK F+ L
Sbjct: 453 EAERTLREMLEAGIKPDDATYTMVIHGFCK----KGDVKTGFKLL 493
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + LI R G++ EA + M + + PD TYT VI GF K G +
Sbjct: 434 DNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLL 493
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
++M P + + +LL GL
Sbjct: 494 KEMQCDGHVPGVVTYNVLLNGLC 516
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + LI ++G +++ ++ M + +FPD TY+ +I G K+G DA
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANK 316
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ +M P ++ F L+ G
Sbjct: 317 LFLEMCDRGLVPNDVTFTTLING 339
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI TG+ + M++++ M ++ + PD TY +I G K G +A +
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+M + P++ + +L+ G L S ++
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALE 421
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + L+ L + K+NEA ++ + K L P ++ +I G+ K G+
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF 280
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M+++ P+ + +L+ GL
Sbjct: 281 RLKRFMMENRVFPDVFTYSVLINGLC 306
>gi|15239614|ref|NP_197396.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635758|sp|Q8GYM2.2|PP393_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18950
gi|332005249|gb|AED92632.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 483
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P YIY+ +I L K EA ++++++ + PD YT +IRGF + G A +
Sbjct: 281 PSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKL 340
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+ +MIK P E + +++ G
Sbjct: 341 WFEMIKKGMRPNEFAYNVMIHG 362
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 39/92 (42%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K Y PD +Y +I G + A ++W M K+ + P+ Y +I G K G
Sbjct: 310 KDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEI 369
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+ Y +M+++ L ++KG H
Sbjct: 370 SLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSH 401
Score = 40.8 bits (94), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I GK +EA +++++M + + P++ TY +I+GF K+ + +Y+++
Sbjct: 394 MIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALG 453
Query: 208 DPPEELPFRILLKGL 222
P + + L++ L
Sbjct: 454 LKPSGMAYAALVRNL 468
>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 756
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 130 DIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
DI++ + +PD Y LI L + G+++ A ++ S++ + + Q Y VI+
Sbjct: 568 DIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQAL 627
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K +AM ++ +M++ DPP+ + ++I+ +GL
Sbjct: 628 CKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLC 663
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D PD + LI AL + ++ A+ + E M L PD +T+T +++GF+++
Sbjct: 193 DAVPPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEG 252
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGK 255
A+ I E M++S + +L+ GL + ++ +EE + P + F
Sbjct: 253 ALRIKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEE-----EGFCPDQVTFNA 307
Query: 256 L 256
L
Sbjct: 308 L 308
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y LI L ++ ++ EA Q+ + M E L PD TYT +++ F + G A +I
Sbjct: 511 SSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIV 570
Query: 201 EDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKDFEELFPEKHAYDP 248
++M + P+ + + L+ GL + LLRS V+ L P+ AY+P
Sbjct: 571 QNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRS-VQMKGMVLTPQ--AYNP 622
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 41/89 (46%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ ++ D Y Y LI L + G+++EA+++ M D P++ TY +I K+
Sbjct: 330 EKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVE 389
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + + P+ F L++GL
Sbjct: 390 AATELARVLTSKGVLPDVCTFNSLIQGLC 418
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I +++ + PD + L+ L RTG + + +++ + M ++ D TY +I G K G
Sbjct: 292 IYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLG 351
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+ I M+ P + + L+ L
Sbjct: 352 EIDEAVEILHHMVSRDCEPNTVTYNTLIGTLC 383
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV+I + +D +P+ Y LI L + + A ++ + + + PD T+ +I
Sbjct: 356 AVEILHHMVSRDC-EPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLI 414
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G + AM ++E+M + P+E + IL++ L
Sbjct: 415 QGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLC 453
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYEDM 203
Y +I AL + + EAM+++ M ++ PD TY V RG G P +A++ +M
Sbjct: 620 YNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEM 679
Query: 204 IKSPDPPEELPFRILLKGLL 223
++ PE F L +GL
Sbjct: 680 LEKGILPEFPSFGFLAEGLC 699
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +F+ ++ Q PD Y Y L+ + + G +NEA + M + D ++ ++
Sbjct: 498 AVDLFNEMKNQG-SGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGCTADINSHNIIL 556
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
GF + G P A+ ++E M P+ + + LL G H + + + E+ +
Sbjct: 557 NGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLL-GCFAHAGMFEEAARLMREMKDKGF 615
Query: 245 AYDP 248
YD
Sbjct: 616 EYDA 619
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++FD + K + QP IY L+ + GK+ +A+ ++E M++ P TYTE+I
Sbjct: 252 AIRLFDEM-KDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPE 211
+G K G +A ++Y++M+ P+
Sbjct: 311 KGLGKAGRVEEAYDLYKNMLTDGLTPD 337
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
V +++ E Q E + V ++ + D + PD Y LI + + G+ + A+++++ M+
Sbjct: 203 VILMLMQEGQHEKVHEVYT-EMCNEGDCF-PDTITYSALISSYEKLGRNDSAIRLFDEMK 260
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P + YT ++ + K G A++++E+M ++ P + L+KGL
Sbjct: 261 DNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELIKGL 313
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAM 197
+P + Y +I+ L + G+ + +V+ M E D FPD+ TY+ +I + K G A+
Sbjct: 194 KPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRNDSAI 253
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
++++M + P E + LL
Sbjct: 254 RLFDEMKDNCMQPTEKIYTTLL 275
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F+ +++ P Y Y +LI L + G++ EA ++++M + L PD ++
Sbjct: 287 ALDLFEEMKRAGC-SPTVYTYTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLM 345
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
K G + N++ +M P + + ++K L S+V F+++
Sbjct: 346 NILGKVGRLEELTNVFNEMGTWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKM 400
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L + G++++A +++ M L P+ T+T +I G G M I
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE----ELFPEKHAY 246
Y+ M++ P+ + + L+ GL LR K E L P+K Y
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTY 403
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI L + G + EA ++ M + L PD TYT +I G K+G A+
Sbjct: 362 KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALE 421
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I ++M+K + + F L+ G
Sbjct: 422 IRKEMVKEGIELDNVAFTALISGFC 446
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
Q +PD + Y LI + G + A+++ + M KE + D+ +T +I GF ++G
Sbjct: 393 QRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVI 452
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+A +M+++ P++ + +++ G + VK F+ L
Sbjct: 453 EAERTLREMLEAGIKPDDATYTMVIHGFCK----KGDVKTGFKLL 493
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D + LI R G++ EA + M + + PD TYT VI GF K G +
Sbjct: 434 DNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLL 493
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
++M P + + +LL GL
Sbjct: 494 KEMQCDGHVPGVVTYNVLLNGLC 516
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P + LI ++G +++ ++ M + +FPD TY+ +I G K+G DA
Sbjct: 257 RPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANK 316
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ +M P ++ F L+ G
Sbjct: 317 LFLEMCDRGLVPNDVTFTTLING 339
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
+IE ER +L I +PD Y +I + G + ++ + M+ +
Sbjct: 451 VIEAERTLREMLEAGI----------KPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDG 500
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
P TY ++ G K G +A + + M+ P+++ + ILL+G H
Sbjct: 501 HVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKH-----GN 555
Query: 233 KKDFEELFPEK 243
++DF++L EK
Sbjct: 556 REDFDKLQSEK 566
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + LI TG+ + M++++ M ++ + PD TY +I G K G +A +
Sbjct: 328 PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKL 387
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+M + P++ + +L+ G L S ++
Sbjct: 388 VIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALE 421
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y PD + L+ L + K+NEA ++ + K L P ++ +I G+ K G+
Sbjct: 221 YPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGF 280
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ M+++ P+ + +L+ GL
Sbjct: 281 RLKRFMMENRVFPDVFTYSVLINGLC 306
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
IFD IRK QP A + LI ++G + E ++ M + +FPD TY+ +I G
Sbjct: 254 IFDEIRKTGL-QPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGL 312
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
K+ DA +++++M P ++ F L+ G
Sbjct: 313 CKECQLEDANHLFKEMCDRGLVPNDVTFTTLING 346
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L + ++ +A +++ M L P+ T+T +I G K+G A+ I
Sbjct: 300 PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEI 359
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFE----ELFPEKHAY 246
Y+ M + + + L+ GL R K E L P+K Y
Sbjct: 360 YQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTY 410
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ Q D + +I L R GK+ +A + M + L PD TYT V+ GF K G
Sbjct: 435 KEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVK 494
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M P + + +L+ GL
Sbjct: 495 MGFKLLKEMQSDGHIPGVITYNVLMNGLC 523
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D +Y LI L + G EA + M K L PD TYT ++ G K+G A+
Sbjct: 369 KADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALE 428
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M+K + + F ++ GL
Sbjct: 429 MRKEMVKEGIQLDNVAFTAIISGLC 453
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ + G + A+++ + M KE + D+ +T +I G +DG DA
Sbjct: 405 PDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERT 464
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+M+++ P++ + +++ G
Sbjct: 465 LREMLRAGLKPDDGTYTMVMDGFC 488
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y P+ Y + L+ L + GK+ +A +++ +RK L P + ++ +I G+ K G+ +
Sbjct: 228 YPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGF 287
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ M + P+ + L+ GL L +D LF E
Sbjct: 288 RLKMVMEEFRVFPDVFTYSALIDGLCKECQL-----EDANHLFKE 327
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y ++ L +GK+ +AM+V + +++ +PD TYT +I K+ AM +
Sbjct: 157 PDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKL 216
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
++M P+ + + +L+ G+ L +K
Sbjct: 217 LDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIK 250
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A+K+ D +R++ +PD Y L+ L+R GK++EA++ + +
Sbjct: 409 TVIDGLSKVGKTERAIKLLDEMRRKGL-KPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 467
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P++ TY ++ G K A++ MI P E + IL++G+
Sbjct: 468 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 519
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ DI+ + Y PD Y L+ AL + GK++ A+++ + + P TY VI
Sbjct: 353 AIEYLDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 411
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G A+ + ++M + P+ + + L+ GL
Sbjct: 412 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 449
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 108 DIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164
DIV +L L + + +AV+I + + + P Y +I L++ GK A+++
Sbjct: 368 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGC-SPVLITYNTVIDGLSKVGKTERAIKL 426
Query: 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ MR++ L PD TY+ ++ G ++G +A+ + D+ P + + ++ GL
Sbjct: 427 LDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 485
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D +++ Y PD Y LI A + + +AM++ + MR + PD TY +I
Sbjct: 178 AMEVLDRQLQKECY-PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLI 236
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
G K+G +A+ +M P + I+L+ +
Sbjct: 237 NGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCS 276
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
I +Q PD Y LI ++G+++ A+QV + M ++ PD TY ++R G
Sbjct: 117 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSG 173
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLK 220
AM + + ++ P+ + + IL++
Sbjct: 174 KLKQAMEVLDRQLQKECYPDVITYTILIE 202
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI R GK +A V E + + PD TY +I G+ K G +A+ +
Sbjct: 90 PDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQV 149
Query: 200 YEDMIKSPD 208
+ M +PD
Sbjct: 150 LDRMNVAPD 158
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ DI+ K + P++ Y L+ + KM+ A++ + M +PD TY ++
Sbjct: 317 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 376
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG A+ I + P + + ++ GL
Sbjct: 377 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGL 414
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 118 RQEETILAVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176
RQ + + A ++FD +I K+ + P IY LI L +++EA ++ +MR + P+
Sbjct: 205 RQGDFLKAFRLFDEMIEKKIF--PTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPN 262
Query: 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY ++ G+ K A+ +Y++M+ P + F IL+ GL
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLC 309
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + LI + GKM AM ++ M + L PD YT +I G KDG+ +A
Sbjct: 435 EPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFR 494
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249
++++M ++ P L+ GL + +K LF K D
Sbjct: 495 LHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK-----LFLAKTGTDTT 540
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 46/88 (52%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P+A Y LI + G M +A++V M ++ + P+ T++ +I G+ K G
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKG 221
AM +Y +M+ P+ + + L+ G
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAYTALIDG 482
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI L +M EA + + M+K+ P++ TY +I G+ K+G+ A+ +
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M + P + F L+ G
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDG 447
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
R L D++ L R + +F+++ + + + ++ LIIA + G + EA+
Sbjct: 90 RCLMRDLIQCLQNSRRSR---ICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEAL 146
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
V+ M D+ P Q V+ G +K G +Y DM+ P + + L+ G
Sbjct: 147 WVYYKM---DVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGC 203
Query: 223 L 223
Sbjct: 204 C 204
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 53/111 (47%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+LI+ + + +++ + F I P+ ++Y LI + G ++EA+ + + K
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEK 361
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ PD TY+ +I+G +A + ++M K P + + L+ G
Sbjct: 362 HEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDG 412
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ +Y LI L G++ +A + + MR L PD T +I+G + D M
Sbjct: 553 SPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMM 612
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ D++K P +R+L KG L+S ++
Sbjct: 613 LQADILKMGIIPNSSVYRVLAKGYEESGYLKSALR 647
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ ++D + ++P Y LI L R ++++ ++ E M P++ TY ++
Sbjct: 84 ALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLV 143
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
L G +A ++ E M + PPE + F +++KGL
Sbjct: 144 NALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLC 182
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI L++ KM+EA+Q+ M + ++ TY+ V+ G LK G DA+
Sbjct: 240 RPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVV 299
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+ M + P+ + + L+ G LR V
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAV 333
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ P Y L L R+G+ +EA+++ + M P++ TY+ ++ G K G +A
Sbjct: 343 GFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 402
Query: 197 MNIYEDMIKSP-DPPEELPFRILLKGLL 223
+ +E M + P + + L+ GL
Sbjct: 403 LGYFEKMARDEVVAPHVIAYSALIDGLC 430
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ + Y ++ L + G+M +A+ V MR PD+ TY +I GF K +A+
Sbjct: 275 RANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG 334
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ +M+++ P + + L GL
Sbjct: 335 LLREMLEAGFHPSVVTYTTLCHGLC 359
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ +F + + Y PD Y LI L + ++ EA ++E R + P TY +I
Sbjct: 14 AITLFKQMVDKAIY-PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 72
Query: 185 RGFLKDGSPADAMNIYEDM-IKSPDPPEELPFRILLKGLL 223
G K G +A+ +Y+DM I P + + L+ GL
Sbjct: 73 DGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLC 112
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+A Y L+ AL G+ EA + E M P+ T+ +I+G K+G A +
Sbjct: 134 PNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRV 193
Query: 200 YED--MIKSPDPPEELPFRILLKGLL 223
++ MI+S P+ + F +L GL
Sbjct: 194 VDEMFMIESGLSPDVITFNSVLDGLC 219
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ F+ + + + P Y LI L + GK++EA + E M + PD T++ +I
Sbjct: 402 ALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILI 461
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G + ++ M + P+ + + L+ L
Sbjct: 462 NGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLC 500
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L R +++EA +++ MR + L PD T +I G L+ DA I
Sbjct: 487 PDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546
Query: 200 YED 202
++
Sbjct: 547 QDE 549
>gi|15236834|ref|NP_194398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186944|ref|NP_001190849.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213515|sp|Q9SZ10.1|PP338_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g26680, mitochondrial; Flags: Precursor
gi|4455191|emb|CAB36514.1| putative protein [Arabidopsis thaliana]
gi|7269520|emb|CAB79523.1| putative protein [Arabidopsis thaliana]
gi|332659836|gb|AEE85236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659837|gb|AEE85237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 521
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ +++ K QP+ + LI R K+ EA +V+ M+ ++ P++ TY +I
Sbjct: 292 ALKLKNMMGKSGL-QPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTLI 350
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELF 240
G+ + G A YEDM+ + + L + L+ GL R + D E L
Sbjct: 351 NGYSQQGDHEMAFRFYEDMVCNGIQRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLV 410
Query: 241 PEKHAYDP 248
P +
Sbjct: 411 PNSSTFSA 418
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
Q D Y LI L + K +A Q + + KE+L P+S T++ +I G +
Sbjct: 375 QRDILTYNALIFGLCKQAKTRKAAQFVKELDKENLVPNSSTFSALIMGQCVRKNADRGFE 434
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y+ MI+S P E F +L+
Sbjct: 435 LYKSMIRSGCHPNEQTFNMLVSAFC 459
>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial [Vitis vinifera]
gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
Length = 586
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 109 IVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
I + LI L ++ + A K+FD K P Y LI + G++ EA ++W++
Sbjct: 418 ITSTLIHWLCKEGKVWEARKLFDEFEKGSI--PSTLTYNALIAGMCEGGELPEAARLWDN 475
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRI 217
M ++ P++ TY +I+GF K G+ + + + E+M+ + P + + I
Sbjct: 476 MVEKGCVPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATYAI 525
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++ K+ Y P + + +I L GK+ A ++W+ + K++ PD+ + +I K
Sbjct: 371 DMLEKK--YIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIHWLCK 428
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G +A ++++ K P L + L+ G+
Sbjct: 429 EGKVWEARKLFDEFEKG-SIPSTLTYNALIAGMC 461
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/84 (21%), Positives = 41/84 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+ Y ++ G M A +V+ + PD TYT ++ G+ K G DA+
Sbjct: 272 FIPNVVTYTTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAV 331
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+ ++M ++ P ++ + ++++
Sbjct: 332 KVMDEMEENRVEPNDVTYGVIIEA 355
>gi|255661004|gb|ACU25671.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
Length = 369
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y +I AL + K+ +A+ V M K P++ Y +I+G + DA+ ++
Sbjct: 128 DAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASKLDDAIRVF 187
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
+M + PP+ + + IL+ GL
Sbjct: 188 HEMGTTHSPPDIVTYNILINGL 209
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+A+++++ + K+ ++PD ++ LI L GK A+ ++ M + + P+ T +
Sbjct: 252 MALQLWNQVTKKG-FKPDVQMHNILIHGLCSVGKTQLALSLYLDMNRWNCAPNLVTQNTL 310
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224
++GF KDG+ +A+ I+ ++++ P+ + + I LKGL
Sbjct: 311 MQGFYKDGNIRNALVIWARILRNELQPDIISYNITLKGLCS 351
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y LI L K+++A++V+ M PD TY +I G K +A +
Sbjct: 161 KPNTCVYNALIKGLVGASKLDDAIRVFHEMGTTHSPPDIVTYNILINGLFKGDRFGEAYD 220
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ ++M++ P + + +L+KGL
Sbjct: 221 LVKEMLEKGLDPSVITYSLLMKGLC 245
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ VL + + EE A+ I +++ K + + D+ Y L+ + +N+++QV E
Sbjct: 65 MIRVLFDNGKVEE---AMSIRELMAKSGFVE-DSKTYGTLVNGFCKNRYINKSLQVLEIA 120
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ D+ Y+ +I K+ A+ + MIKS P + L+KGL+ L
Sbjct: 121 EQKGGVLDAFAYSAMINALCKEAKLEKAVCVLNGMIKSGCKPNTCVYNALIKGLVGASKL 180
Query: 229 RSKVKKDFEELFPEKHAYDPPE 250
++ F E+ + PP+
Sbjct: 181 DDAIRV-FHEM---GTTHSPPD 198
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
DI+ ++ PDA +Y ++ R G++ + ++WE M +E ++ +IR
Sbjct: 15 DIVERK--VSPDAVVYNAMLNGFYRAGRIEDCFELWEMMGREGR-RSVASFNTMIRVLFD 71
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
+G +AM+I E M KS + + L+ G +
Sbjct: 72 NGKVEEAMSIRELMAKSGFVEDSKTYGTLVNGFCKN 107
Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L K+ A+Q+W + K+ PD Q + +I G G A+++
Sbjct: 232 PSVITYSLLMKGLCLGDKVEMALQLWNQVTKKGFKPDVQMHNILIHGLCSVGKTQLALSL 291
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
Y DM + P + L++G +R+ +
Sbjct: 292 YLDMNRWNCAPNLVTQNTLMQGFYKDGNIRNAL 324
>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Vitis vinifera]
Length = 877
Score = 53.9 bits (128), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y D+I+ R G M+ A V+ M DL P+ TY+ +I G K G A+++
Sbjct: 502 PNVVSYNDMILGHCRKGNMDMASSVFSDMLARDLKPNVVTYSILIDGNFKKGDSEKALDL 561
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL---RSKVKKDFEELF 240
++ M+ P + F ++ GL + R K+K EE F
Sbjct: 562 FDQMLSLNIAPTDFTFNTIINGLCKVGQMSEARDKLKNFLEEGF 605
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 103 RLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159
R LK ++V I ++ ++ ++ A+ +FD + + P + + +I L + G+M+
Sbjct: 533 RDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLN-IAPTDFTFNTIINGLCKVGQMS 591
Query: 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
EA ++ +E P TY ++ GF+K+G+ A+ +Y +M + P + + L+
Sbjct: 592 EARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLI 651
Query: 220 KGL 222
G
Sbjct: 652 NGF 654
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMN 198
P+ +Y +I M EA VW D P D TYT +I G LK+G A +
Sbjct: 712 PNRIVYNSMISGFRDLNNM-EAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASD 770
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+Y +M+ P+ + F +L+ GL L + +K EE+
Sbjct: 771 LYMEMLSKGIVPDIITFHVLVNGLCNKGQLEN-ARKILEEM 810
Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
G ++ A+ ++ + ++ LFP+ TY+ +I G G+ A +Y M + PP
Sbjct: 379 GNLDSALNLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNV 438
Query: 216 RILLKGLLPHPLLRSKVKKDFEE 238
LL+G L PL + K F+E
Sbjct: 439 NSLLRGYLKAPLWE-EASKLFDE 460
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA Y +I A+ + N +++ E M++ P T+T VI + G+ +A+ +
Sbjct: 294 DAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWVPSEATFTSVIVACVAQGNMVEALRLK 353
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHAY 246
E+MI P + L+KG L S + K + LFP K Y
Sbjct: 354 EEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDGLFPNKVTY 403
Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 68/134 (50%), Gaps = 4/134 (2%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
E+ +++ + R +K+D A I ++ ++ + L +++ + ++++ W P +
Sbjct: 277 EEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERGWV-PSEATFTS 335
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
+I+A G M EA+++ E M + T +++G+ G+ A+N++ + +
Sbjct: 336 VIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSALNLFNKITEDG 395
Query: 208 DPPEELPFRILLKG 221
P ++ + +L++G
Sbjct: 396 LFPNKVTYSVLIEG 409
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L + +T A+K+ D +R++ +PD Y L+ L+R GK++EA++ + +
Sbjct: 297 TVIDGLSKVGKTERAIKLLDEMRRKGL-KPDIITYSSLVSGLSREGKVDEAIKFFHDLEG 355
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ P++ TY ++ G K A++ MI P E + IL++G+
Sbjct: 356 LGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGI 407
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ DI+ + Y PD Y L+ AL + GK++ A+++ + + P TY VI
Sbjct: 241 AIEYLDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVI 299
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G K G A+ + ++M + P+ + + L+ GL
Sbjct: 300 DGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGL 337
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 95 KFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
+++ V R DIV +L L + + +AV+I + + + P Y +I
Sbjct: 243 EYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGC-SPVLITYNTVIDG 301
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
L++ GK A+++ + MR++ L PD TY+ ++ G ++G +A+ + D+ P
Sbjct: 302 LSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 361
Query: 212 ELPFRILLKGLL 223
+ + ++ GL
Sbjct: 362 AITYNSIMLGLC 373
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 127 KIFDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
+ DI+ K + P++ Y L+ + KM+ A++ + M +PD TY ++
Sbjct: 205 RAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLL 264
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
KDG A+ I + P + + ++ GL
Sbjct: 265 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGL 302
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+L L + ET AVK+ +I + +PD +Y +I L + +N+A + M
Sbjct: 175 TLLNGLCKIGETRCAVKLLRMIEDRST-RPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNA 233
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+FP+ TY+ +I GF G A ++ +MI P + IL+ L
Sbjct: 234 RGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCK----EG 289
Query: 231 KVKKDFEELFPEKHAYDPPEEI 252
KV K+ ++L E H P ++
Sbjct: 290 KV-KEAKKLLAEMHHKGQPADV 310
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+VL L + + A +F ++ + W QP+ Y Y LI L + G++ A ++++ +
Sbjct: 315 SVLDGLCKSQNLDKATALF--MKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLL 372
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ D +TY +I G K+G A+ + M + P + F I+++ L
Sbjct: 373 VKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSL 425
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ Y Y LI AL + GK+ EA ++ M + D TY V+ G K + A
Sbjct: 272 NPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATA 331
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
++ M K P + + L+ GL L++ +K F+ L + D
Sbjct: 332 LFMKMKKWGIQPNKYTYTALIDGLCKGGRLKN-AQKLFQHLLVKGCCID 379
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 139 QP-DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
QP D Y ++ L ++ +++A ++ M+K + P+ TYT +I G K G +A
Sbjct: 306 QPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQ 365
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPL----LRSKVKKDFEELFPEKHAYD 247
+++ ++ + + +++ GL + L K K + P +D
Sbjct: 366 KLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFD 419
>gi|326493764|dbj|BAJ85344.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 730
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+D +PD+ Y ++ L G + +A +++E MRK+ L D Y ++ G++ G
Sbjct: 331 RDGVEPDSMAYATMVEGLCNAGMVEKAAKLFEGMRKKGLLVDRIVYASLVHGYVAAGRVG 390
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
D + +DM+ + + + IL+ GL
Sbjct: 391 DGCRVLKDMVDAGYRADLKTYNILIGGLC 419
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+ + +PD ++Y L+ + R G M ++VWE M ++ + PDS Y ++ G G
Sbjct: 295 RDEVCRPDVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMV 354
Query: 194 ADAMNIYEDMIK 205
A ++E M K
Sbjct: 355 EKAAKLFEGMRK 366
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR-KEDLFPDSQTYTEV 183
AV++F +R++ + + Y LI L + + +A+ ++E M+ +D P+S TY+ +
Sbjct: 497 AVEVFKTLRQKGYCSVN--FYNILIENLLKIKEREKALLLFEEMKDSDDCEPESCTYSLM 554
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
I F+ +G+ +A + Y M+K+ P +R L+KGL
Sbjct: 555 IPCFVDEGNIEEACSCYNSMMKAEWIPSLSAYRSLVKGLC 594
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD + + +P + ++ AL + GK +++ MR E PD YT ++
Sbjct: 252 ALKLFDEM-AESGIRPMPVSFAIIVRALGQEGKPERILEMIGRMRDEVCRPDVFVYTTLV 310
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ ++ G + ++E+M + P+ + + +++GL ++ K K FE +
Sbjct: 311 KTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMVE-KAAKLFEGM 364
>gi|449457341|ref|XP_004146407.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
gi|449523938|ref|XP_004168980.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13420,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++++ +R+ P + Y L+ K ++W M++ + PD +YT +I
Sbjct: 372 ALRLYKKMREDCLCAPSLHTYNILLALFLNLDKKETLKELWNDMKESGVGPDLDSYTTII 431
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEE 238
G + ++A + +MI+ P+++ F +L +GL+ +LR+ ++KK EE
Sbjct: 432 HGLCEKQRWSEACQFFVEMIERGFLPQKVTFEMLYRGLIQSDMLRTWRRLKKKLEE 487
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%)
Query: 91 EKLQKFIKTHVLRLLKMDIVAVLIELE------------RQEETIL-AVKIFDIIRKQDW 137
E ++F+K V R ++ ++V + L R E+TI A K+FD +RK+
Sbjct: 220 EMAERFLKDMVERGIEPNVVTYNVLLNGVCRRASLHPEGRFEKTIRHAEKVFDEMRKRG- 278
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+PD + ++ +R K ++ + M++ + P TYT VI+ G D
Sbjct: 279 IEPDVTSFSIVLHVYSRAHKPELSLDKLKQMKELGISPTVATYTSVIKCLCSCGRLEDGE 338
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
N+ E+M++S P + K
Sbjct: 339 NLIEEMVRSGISPSPTTYNCFFK 361
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 42/78 (53%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++P+A Y LI AL + +M EAM+V+ M + + D TYT ++ GF K G
Sbjct: 319 FEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCY 378
Query: 198 NIYEDMIKSPDPPEELPF 215
+ +DMIK P +L +
Sbjct: 379 LVLDDMIKKGLMPSQLTY 396
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+EE ++ K + K+ ++PD Y +L+ A GKM +A + + MR+ P++
Sbjct: 265 REEKMMEAKYVLVQMKEAGFEPDIVDYTNLLSGYANAGKMADAYDLLKDMRRRGFEPNAT 324
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
YT +I+ K +AM ++ +M + + + + L+ G
Sbjct: 325 CYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFC 369
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 106 KMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165
++ + ++ E++E+ I +++ + + KQ Y PD IY +I + G++ EA+++W
Sbjct: 393 QLTYMHIMAAHEKKEKLIECLELMEKM-KQIEYHPDIGIYNVVIRLACKLGEVKEAVRLW 451
Query: 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
M L P + T+ +I G G +A + +++M+
Sbjct: 452 NEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMV 490
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+F+ +R + + + + L+ R KM EA V M++ PD YT ++
Sbjct: 238 AAKLFEDMRLR--FPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFEPDIVDYTNLL 295
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G+ G ADA ++ +DM + P + +L++ L
Sbjct: 296 SGYANAGKMADAYDLLKDMRRRGFEPNATCYTVLIQALC 334
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+K P Y ++ A + K+ E +++ E M++ + PD Y VIR K
Sbjct: 383 DMIKKG--LMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLACK 440
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
G +A+ ++ +M + P F I++ GL L
Sbjct: 441 LGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCL 479
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR-K 170
+L L + ++ A +FD + +D +P I+ L+ ++ + +A++++ESMR
Sbjct: 40 LLTMLAKAKQAAEASNVFDCLL-EDKLRPTTAIFTALLTVFTQSNQFKKALEIFESMRLY 98
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
E PD TYT +I+G + G A I+++M+ P + + IL+ G L R
Sbjct: 99 EGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFR 157
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++F+++R Q+WY D Y L+ LA+ + EA V++ + ++ L P + +T ++
Sbjct: 19 QVFELVRAQEWYTADLSTYLKLLTMLAKAKQAAEASNVFDCLLEDKLRPTTAIFTALLTV 78
Query: 187 FLKDGSPADAMNIYEDM-IKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
F + A+ I+E M + P++ + ++KG L + +K F+E+ E
Sbjct: 79 FTQSNQFKKALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLY-VQARKIFDEMMIE 134
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++IF+ +R + PD Y Y +I G +A ++++ M E + P TY +I
Sbjct: 88 ALEIFESMRLYEGCVPDKYTYTAMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILI 147
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
G+ K G + + M + P+ + + L++
Sbjct: 148 HGYGKAGLFREVERVLSTMEANNVAPDTVTWNTLIR 183
>gi|115440379|ref|NP_001044469.1| Os01g0785700 [Oryza sativa Japonica Group]
gi|20804913|dbj|BAB92593.1| drought-inducible protein 1OS [Oryza sativa Japonica Group]
gi|37179506|gb|AAN05726.2| drought-inducible protein 1OS [Oryza sativa Indica Group]
gi|113534000|dbj|BAF06383.1| Os01g0785700 [Oryza sativa Japonica Group]
gi|125527974|gb|EAY76088.1| hypothetical protein OsI_04014 [Oryza sativa Indica Group]
gi|125572269|gb|EAZ13784.1| hypothetical protein OsJ_03709 [Oryza sativa Japonica Group]
gi|215704731|dbj|BAG94759.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215717015|dbj|BAG95378.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 434
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K++++I +++ PDA Y + L G++ +A+ V E M K+ PD+ +Y E+I
Sbjct: 253 AEKVWEMITERNMV-PDAKNYNAKLRGLVAQGRIEDAVAVVEKMEKDGPKPDTISYNELI 311
Query: 185 RGFLKDGSPADAMNIYEDMIKS 206
RG+ KDG +A ++EDM ++
Sbjct: 312 RGYCKDGRLEEAKKLFEDMAEN 333
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 1/101 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + L+ G M+ A +VWE + + ++ PD++ Y +RG + G DA+
Sbjct: 231 SPDLVTFNTLLNGFYNHGDMDGAEKVWEMITERNMVPDAKNYNAKLRGLVAQGRIEDAVA 290
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ E M K P+ + + L++G L + KK FE++
Sbjct: 291 VVEKMEKDGPKPDTISYNELIRGYCKDGRLE-EAKKLFEDM 330
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 40/93 (43%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y Y L+ AL + ++ A+ M K + PD T+ ++ GF G A +
Sbjct: 197 PSVYSYNILLQALCKVPDLSAALDTMTLMEKSGISPDLVTFNTLLNGFYNHGDMDGAEKV 256
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
+E + + P+ + L+GL+ + V
Sbjct: 257 WEMITERNMVPDAKNYNAKLRGLVAQGRIEDAV 289
>gi|357115831|ref|XP_003559689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g55840-like [Brachypodium distachyon]
Length = 968
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+II K+ Y D Y ++ + GK+++ M + ++P+ +Y ++ G +K
Sbjct: 559 EIICKEGMYA-DCIAYNSMMNGYLKAGKLHKVEMTIYDMNQNKVYPNPASYNILMHGHIK 617
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV----KKDFEELFPEKHA 245
G + ++ +Y+DM++ P + +R+L+ GL H ++ V K E ++P++ +
Sbjct: 618 KGHLSRSIYLYKDMVRKGIKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLS 677
Query: 246 YD 247
+D
Sbjct: 678 FD 679
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
+ + +LA+ IF+ + +Q +P Y LI R G ++EA++V M+ + P
Sbjct: 342 ESKMMLAIHIFNEMLRQG-LKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEV 400
Query: 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TY+ ++ +GS +A ++Y++M K P+ +R LL+GL
Sbjct: 401 TYSAML-----NGSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGL 439
Score = 45.8 bits (107), Expect = 0.017, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172
L +++R L +K + D PD Y LI KM A+ ++ M ++
Sbjct: 304 LCKMKRSTHAYLLLKRM----RGDNLAPDECTYNTLIKGFFDESKMMLAIHIFNEMLRQG 359
Query: 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P TYT +I G+ ++G+ +A+ + +M + P E+ + +L G
Sbjct: 360 LKPSLATYTTLIDGYCRNGTIDEALRVLYEMQVAGVKPSEVTYSAMLNG 408
Score = 45.4 bits (106), Expect = 0.022, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y Y +I L + + A + + MR ++L PD TY +I+GF + A++
Sbjct: 291 EADVYTYNIMIDKLCKMKRSTHAYLLLKRMRGDNLAPDECTYNTLIKGFFDESKMMLAIH 350
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
I+ +M++ P + L+ G
Sbjct: 351 IFNEMLRQGLKPSLATYTTLIDG 373
Score = 45.1 bits (105), Expect = 0.032, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 42/76 (55%)
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L++ + G ++EA+ + E M + PD TYT ++ GF + G A+ + + M++
Sbjct: 470 LLLGICNHGSLDEALDLCEKMVTINFIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKG 529
Query: 208 DPPEELPFRILLKGLL 223
P+ + + LLKGL+
Sbjct: 530 LVPDIVTYTCLLKGLI 545
Score = 44.3 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
+AVK D + + Y PD + LI A + +M++A+Q++ M+ + P S+TY+ +
Sbjct: 658 IAVKFLDKMVLEGIY-PDRLSFDVLINAFSEKSRMSDALQLFNCMKWLYMSPSSKTYSAM 716
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
I G ++ + ++ DM++S P+ + L+
Sbjct: 717 INGLIRKNWLQHSCDVLRDMVESGLEPKHTHYIALI 752
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + Y L+ R GK+ A+ + + M ++ L PD TYT +++G +K+G A
Sbjct: 495 FIPDIHTYTILLSGFCRKGKIVPAVILLQMMLEKGLVPDIVTYTCLLKGLIKEGQVKAAS 554
Query: 198 NIYEDMI 204
+++++I
Sbjct: 555 YLFQEII 561
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 47/94 (50%), Gaps = 2/94 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D++RK +P Y+ LI+ L++ G + A++ + M E ++PD ++ +I F +
Sbjct: 630 DMVRKG--IKPTNVTYRLLILGLSKHGMIEIAVKFLDKMVLEGIYPDRLSFDVLINAFSE 687
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+DA+ ++ M P + ++ GL+
Sbjct: 688 KSRMSDALQLFNCMKWLYMSPSSKTYSAMINGLI 721
Score = 38.1 bits (87), Expect = 3.7, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
G ++EA V+++M K PD TY ++RG K G A ++ P ++
Sbjct: 408 GSVHEAFSVYDNMEKYGCSPDVYTYRNLLRGLCKGGHLVQAKEFMSCIVHIPSAIDQKTL 467
Query: 216 RILLKGLLPH 225
LL G+ H
Sbjct: 468 NALLLGICNH 477
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y I L + GK+++ +++ E M + + PD T+ +I G K DA +
Sbjct: 149 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQV 208
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
++ M++ P+ L + I+L L
Sbjct: 209 FKGMLERGCVPDSLTYSIMLDNL 231
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 42/92 (45%)
Query: 132 IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
+ + Y Y LI L ++G ++ A + + M P+ TYT +I G K
Sbjct: 35 VMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKAR 94
Query: 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
P DA+ + M++S P+ + + L+ GL
Sbjct: 95 RPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLC 126
Score = 41.6 bits (96), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEA-MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+PD Y LI L +M++A + + E M + PD TY I G K G +
Sbjct: 112 EPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGL 171
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ E+M + P+ + F ++ GL
Sbjct: 172 EMLEEMDRGGISPDVVTFCSIISGLC 197
Score = 37.4 bits (85), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPAD 195
+PD + LI + G++++A Q+ + M+ +++ PD TY +I G K GS
Sbjct: 357 CCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQ 416
Query: 196 AMNIYEDM 203
A + E+M
Sbjct: 417 AKLLLEEM 424
>gi|356538835|ref|XP_003537906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g15980-like [Glycine max]
Length = 487
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y+P+AY Y L+ G+M +A ++WE +R E + PD +Y +I GF G A
Sbjct: 274 YKPNAYSYSVLMATFCDEGRMGDAEKLWEELRSEKIEPDVVSYNTIIGGFCTIGDVGRAE 333
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
+ +M + + L+KG
Sbjct: 334 EFFREMAVAGVGTTASTYEHLVKG 357
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y DL++ + G + ++W M K + P++ +Y+ ++ F +G DA +
Sbjct: 242 PNVHTYNDLMLCCYQDGLVERVEKIWIEM-KCNYKPNAYSYSVLMATFCDEGRMGDAEKL 300
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E++ P+ + + ++ G
Sbjct: 301 WEELRSEKIEPDVVSYNTIIGGFC 324
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ-VWESMRKEDLFPDSQTYTEV 183
AV ++ + + D +PDA +I L G++ E+++ V ++ K DL P ++Y +
Sbjct: 367 AVLVYKDMARSD-LRPDASTLDVMIRLLCDKGRVRESLEFVRCAVGKFDLIPMEKSYEAL 425
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225
I+G DG +A+ + +M+ P + + G + H
Sbjct: 426 IKGLCFDGRMEEALKVQAEMVGKGFQPNSEIYGAFVDGYVRH 467
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 91 EKLQKFIKTHVLRLLKMDI-------VAVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143
E + K +LR+L +D+ ++ R + A +FD++ ++ PD
Sbjct: 540 ELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERG-ITPDVI 598
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
Y +I R + EA ++ M++ + PD TYT V+ G K + DA+N+Y++M
Sbjct: 599 TYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEM 658
Query: 204 IKSPDPPEELPFRILLKG 221
I P+ + + LL G
Sbjct: 659 IARGLQPDIVTYTALLPG 676
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 5/100 (5%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D +Y ++ AL + GK+ EA+++ M+ + D YT +I G+ G DA N++
Sbjct: 382 DEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMF 441
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
E+M + P+ + + IL+ G R+ +KK+ EL
Sbjct: 442 EEMKERGIEPDIVTYNILVGG-----FSRNGLKKEALELL 476
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L +L + EE AV++ + ++ + D Y LI GK+ +A ++E M
Sbjct: 389 VVDALCKLGKVEE---AVELLNEMKGRR-MSLDVVHYTTLIAGYCLQGKLVDAKNMFEEM 444
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
++ + PD TY ++ GF ++G +A+ + + + P +++GL
Sbjct: 445 KERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLC 499
>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Brachypodium distachyon]
Length = 1102
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI L R+G++ EA+ ++ M K + P+ TY +I K+G A+A
Sbjct: 983 EPDLITYNLLIHGLGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLILYLGKEGKAAEAGK 1042
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+YE+++K+ P + L+ G
Sbjct: 1043 MYEELLKNGWKPNVFTYNALIGG 1065
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R EE AV +F+ + K P+ Y Y LI+ L + GK EA +++E + K P+
Sbjct: 1001 RLEE---AVSLFNDMEKSG-IAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPNV 1056
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
TY +I G+ GS +A Y MI PP + L LL
Sbjct: 1057 FTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPNSSTYMQLPNQLL 1102
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 125 AVKIFDIIRKQD-----WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
+++I D+++ Q Y+ Y +I L ++ + EAM ++ + E P T
Sbjct: 824 SMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCT 883
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
Y ++ G LKDG DA +++++M+ P + ILL G
Sbjct: 884 YGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPNRAIYNILLNG 925
Score = 46.2 bits (108), Expect = 0.012, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI L + G+ NEA +++ +++ +L P TY ++ G ++G + M++
Sbjct: 529 PDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGLGREGKVKEVMHL 588
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M + PP + + +L L
Sbjct: 589 LEEMNSNSYPPNLITYNTVLDCL 611
Score = 45.8 bits (107), Expect = 0.016, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
E++ A+K +++++ + PD ++ +LA++G++ A +V+ ++ + PD+ TY
Sbjct: 441 ESLKAIKRYELMKSKG-IVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITY 499
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
T +I+ K + +AM ++ +MI++ P+ L L+ L
Sbjct: 500 TMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDTL 541
Score = 43.9 bits (102), Expect = 0.073, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI AL G++N+++ + + + L PD TY +I G + G +A+++
Sbjct: 949 PDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGLGRSGRLEEAVSL 1008
Query: 200 YEDMIKSPDPPEELPFRILL 219
+ DM KS P + L+
Sbjct: 1009 FNDMEKSGIAPNLYTYNSLI 1028
Score = 42.4 bits (98), Expect = 0.17, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y Y I L + G+ EA ++ + M E PD T T +I+ G +DA +
Sbjct: 248 KPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKD 307
Query: 199 IYEDMIKSPDPPEELPFRILL 219
++ M S P+ + + LL
Sbjct: 308 VFWKMKASDQKPDRVTYITLL 328
Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L ++ R +E A +FD + KQ +P Y Y LI + ++N A++++ M
Sbjct: 362 VVDALCQVGRVDE---ASDVFDQM-KQKGIEPQQYSYNSLISGFLKADRLNHALELFNHM 417
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
P+ TY I + K G A+ YE M
Sbjct: 418 NIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELM 452
Score = 40.4 bits (93), Expect = 0.82, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y ++ A+ ++ ++ + ++V + M + TY +I G +K +AM++
Sbjct: 809 PDEFTYNLILDAMGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLVKSKMLYEAMDL 868
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAY 246
Y ++ P + LL G LL+ +D E+LF E Y
Sbjct: 869 YYKLMSEGFSPTPCTYGPLLDG-----LLKDGKIEDAEDLFDEMLDY 910
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A KIF +++ + P Y L+ L R GK+ E M + E M P+ TY V+
Sbjct: 550 AWKIFHELKEMN-LDPTDCTYNTLLAGLGREGKVKEVMHLLEEMNSNSYPPNLITYNTVL 608
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+G A+ + +M P+ + L GL+
Sbjct: 609 DCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLV 647
Score = 37.7 bits (86), Expect = 4.4, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AVL L + +A ++F + K PD Y +I ++ +EAM+V+ M +
Sbjct: 466 AVLYSLAKSGRLGMAKRVFHEL-KSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIE 524
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PD +I K G +A I+ ++ + P + + LL GL
Sbjct: 525 TRCVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGL 576
Score = 37.4 bits (85), Expect = 6.5, Method: Composition-based stats.
Identities = 17/85 (20%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y L+ G +++W +M+ + + YT V+ + G +A +
Sbjct: 318 KPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASD 377
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+++ M + P++ + L+ G L
Sbjct: 378 VFDQMKQKGIEPQQYSYNSLISGFL 402
Score = 37.4 bits (85), Expect = 6.5, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y P+ Y ++ L + G++N A+ + +M + PD +Y + G +K+ +A
Sbjct: 597 YPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTALHGLVKEDRLTEAF 656
Query: 198 NIYEDMIK--SPD 208
I+ M K +PD
Sbjct: 657 RIFCQMKKVLAPD 669
Score = 36.6 bits (83), Expect = 9.1, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y + L + ++ EA +++ M+K L PD T ++ F+K+G +A++
Sbjct: 634 PDLSSYNTALHGLVKEDRLTEAFRIFCQMKKV-LAPDYTTLCTILPSFVKNGLMNEALHT 692
Query: 200 YEDMIKSP-DPPEELPFRILLKGLLPHPLLRSKVKKDFE 237
++ I P + F L++G+L R+ ++K E
Sbjct: 693 LKEYILQPGSKADRSSFHSLMEGILK----RAGMEKSIE 727
>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 102 LRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161
LRLL + A + L A+K++ ++ + + D + L+ +L R GK+ EA
Sbjct: 393 LRLLD-HMEAAGLRLNEHGNVTEAMKVYAVM-NCNGHGADHFTCNVLVSSLCRDGKLGEA 450
Query: 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
+ M + L P+S TY +I G+ G P +A + ++DMIK P + LLKG
Sbjct: 451 EKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKG 510
Query: 222 L 222
L
Sbjct: 511 L 511
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW-ESMRKEDLFPDSQTYTEV 183
AV +FD + Q+ PD+Y Y L+ L R GK A+ ++ +M + LFP+ YT +
Sbjct: 555 AVALFDKM-VQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 613
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
+ G K G P A +E+M+K P+ + F ++
Sbjct: 614 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAII 649
Score = 43.5 bits (101), Expect = 0.094, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + +I + +R G+M +A + +MR + P+ TY ++ GF K + +++
Sbjct: 640 PDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSL 699
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y M++ P++L F L+ GL
Sbjct: 700 YSTMMREGIFPDKLTFHSLILGL 722
Score = 42.0 bits (97), Expect = 0.23, Method: Composition-based stats.
Identities = 20/83 (24%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D+ +Y L+ ++G ++EA+ +++ M + ++ PDS TY+ ++ G + G A+ ++
Sbjct: 535 DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLF 594
Query: 201 -EDMIKSPDPPEELPFRILLKGL 222
M + P + + L+ GL
Sbjct: 595 GTAMGRGTLFPNHVMYTCLVDGL 617
Score = 40.4 bits (93), Expect = 0.72, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ D Y I L + +A + + MRKE + P+ TY +I GF+K+G A
Sbjct: 300 EADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQ 359
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
++ +M K P + + L+ G
Sbjct: 360 VFNEMSKFDLSPNCVTYNALIGG 382
Score = 40.4 bits (93), Expect = 0.75, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
+++ P+ Y LI + GK+ A QV+ M K DL P+ TY +I G G
Sbjct: 330 RKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDF 389
Query: 194 ADAMNIYEDM 203
+A+ + + M
Sbjct: 390 EEALRLLDHM 399
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 63/121 (52%)
Query: 103 RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
++ K D++ LI L + + + +++ +++QDW+ + + +I A + G+ A
Sbjct: 68 KVSKGDVLGTLIRLRQLNKWTMVLEVLLWLKQQDWWNFGIHDFNLMIAAYGKLGQPGIAE 127
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ MR+ L P+ +T ++ + G+ A +IY++M+K+ P E+ +++ + L
Sbjct: 128 LSFTEMREVGLEPNVACFTSLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINAL 187
Query: 223 L 223
Sbjct: 188 C 188
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
QD +PD Y L+ A A TG M +A ++ + M++ L P+ TY +++G+
Sbjct: 343 QDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDIN 402
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLK 220
+ +ED+ K+ P F +L++
Sbjct: 403 AMLQTFEDLQKAGIKPNSTIFTLLVR 428
>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
Length = 563
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 92 KLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
K+ + + L+ K+ ++ E +Q A+ +FD + ++ PD Y LI
Sbjct: 305 KVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLIST 363
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ +M E+ + ++ L P QTYT +I G+ K G A+ ++E M+++ +
Sbjct: 364 YCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD 423
Query: 212 ELPFRILLKGLLPHPLL 228
+ + L+ GL L
Sbjct: 424 SITYGALISGLCKESRL 440
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + K Y+P+ + Y +I R GK+ A + M ++ L P++ TYT +I
Sbjct: 197 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 256
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K GS A + M + P + ++ G
Sbjct: 257 GGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFC 295
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I + G+ A++V+E M + F DS TY +I G K+ +A +
Sbjct: 387 PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKAL 446
Query: 200 YEDMIKSPDPPEELP 214
YE M+ P E+
Sbjct: 447 YEGMLDKRLVPCEVT 461
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ+ + P+ Y Y +I + GK+ EA +V + L D TYT +I K G
Sbjct: 276 KQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 335
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+++++ M+++ P+
Sbjct: 336 TYALDLFDRMVENGCCPD 353
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + G + A ++ M++E P+ TY VI GF K G +A
Sbjct: 246 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 305
Query: 199 IYEDMIKSPDPPEELPFRILL 219
+ +++ + IL+
Sbjct: 306 VLRMATSQGLKFDKITYTILI 326
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
++ L + EE + A ++F+ + K Y PD +Y +I L G EA ++W M +
Sbjct: 304 IINGLCKNEECLEAYRVFNDL-KDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDK 362
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205
+ P++ TY ++ G LK G A +Y +M
Sbjct: 363 GMQPNAYTYNTMLHGSLKSGDFERACELYNEMCN 396
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y +I L GK +EA +V++ M + + D+ TY +IRGF K+G + M
Sbjct: 399 YGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERM 458
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE------------LFPEKHA 245
N+ +++ + DP + LL +++S DFE L P +
Sbjct: 459 NLLNELV-AQDPQPSVSLYELL-------IIKSCKDGDFEAAKRLLGDMSSKGLHPNAYT 510
Query: 246 YDP 248
YD
Sbjct: 511 YDT 513
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y +I L GK +EA ++++ M + + D+ TY +IRGF K+G +M
Sbjct: 539 YGTTTATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSM 598
Query: 198 NIYEDMIKSPDPPEELPFRILL---------------------KGLLPHPLLR 229
N+ +++ P + L+ KG+ PH LR
Sbjct: 599 NLLNELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLR 651
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y Y+++I L + + EA +V+ ++ PD YT +I G + GS +A +
Sbjct: 296 PTIYTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKL 355
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M+ P + +L G L
Sbjct: 356 WFEMMDKGMQPNAYTYNTMLHGSL 379
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP A Y LII L + G A ++W M + + P + +I G K G + M+
Sbjct: 610 QPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMD 669
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
M+++ P++ F L + L+
Sbjct: 670 RLMGMLENKIKPKKAAFEDLAECLI 694
>gi|168049914|ref|XP_001777406.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671255|gb|EDQ57810.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 570
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA Y +I + GK +EA+ ++ES++K PD TY ++R F + G + A++I
Sbjct: 111 PDAVTYSTMIDVYGKVGKYDEAVALYESVKKSGWKPDKVTYGTMVRLFGRAGYISAAVSI 170
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+++M S P + + I++ L
Sbjct: 171 FDEMKGSGIQPGSVVYNIMISCL 193
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV IFD ++ QP + +Y +I L R G+M A++V++ M++ + P++ T + V+
Sbjct: 167 AVSIFDEMKGSG-IQPGSVVYNIMISCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVM 225
Query: 185 RGFLKDGSPADAMNIYEDM 203
+ + G + + I+ M
Sbjct: 226 EIYSRSGKVMEGLGIFHHM 244
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV +++ ++K W +PD Y ++ R G ++ A+ +++ M+ + P S Y +I
Sbjct: 132 AVALYESVKKSGW-KPDKVTYGTMVRLFGRAGYISAAVSIFDEMKGSGIQPGSVVYNIMI 190
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220
+ G A+ ++++M ++ P + +++
Sbjct: 191 SCLGRAGRMGHALKVFQEMKQAGVKPNAVTLSTVME 226
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI R + AM ++ M PD+ TY+ +I + K G +A+
Sbjct: 75 RPDNITYSTLISCANRCNYQDAAMAWFDRMHDAQCVPDAVTYSTMIDVYGKVGKYDEAVA 134
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
+YE + KS P+++ + +++
Sbjct: 135 LYESVKKSGWKPDKVTYGTMVR 156
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 42/83 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+QP+ + Y+++I A+ G EA +++ + + PD +YT +++G+
Sbjct: 283 HQPNDWTYRNMISLYAKNGMAVEAQRMFSQLVEAGYQPDVMSYTSLLQGYGNAKDYEKVQ 342
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
I +M+ + P+E + ++L
Sbjct: 343 EILHEMVSANCAPDERLWCVILN 365
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L +Q + A I + + + ++ D Y LI L + G+ A++V MR
Sbjct: 536 SILTHYCKQGDIKKAADILETM-TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 594
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + P + Y V++ + + DA++++ +M + +PP+ L ++I+ +GL
Sbjct: 595 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 647
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++A L R EE + D+ R+ PD Y + LI AL + G + A++++E
Sbjct: 362 LIAALCTGNRLEEAL------DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M+ PD TY +I G A+++ +DM + P + + ++ GL
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ Q+ + PD + Y ++ L + G++ EA + M PD T+ +I
Sbjct: 305 ALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELF 240
+A+++ + P+ F IL+ L PH LR FEE+
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL-----FEEM- 417
Query: 241 PEKHAYDPPEEI 252
K++ P+E+
Sbjct: 418 --KNSGCTPDEV 427
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI AL ++ EA+ + + + + PD T+ +I K G P A+ +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+M S P+E+ + L+ L
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLC 437
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + L+ AL R ++ A+ + E M + PD T+T +++GF+++GS A+
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M++ ++ +L+ G
Sbjct: 238 VKARMLEMGCSATKVTVNVLING 260
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D ++PD Y + L + + A++V + M +E PD TY V+ K+G +
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A I M+ P+ F L+ L
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALC 367
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAY 143
+ D +K ++T ++D+V LI L + T +A+K+ +R + +P
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM-RPTPK 602
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYED 202
Y ++ +L R + +A+ ++ M + PD+ TY V RG + G P +A + +
Sbjct: 603 AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLE 662
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M+ PE FR+L +GLL
Sbjct: 663 MVDKGFIPEFSSFRMLAEGLL 683
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + Q + +A + LI L + K+++A ++ M E L P++ TY ++
Sbjct: 480 AEEVFDQMDLQGISR-NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL 538
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELF 240
+ K G A +I E M + + + + L+ GL + +K + +
Sbjct: 539 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598
Query: 241 PEKHAYDP 248
P AY+P
Sbjct: 599 PTPKAYNP 606
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y L+ L +G+ ++A ++ M K + PD T+T +I F+K G+ +A +Y
Sbjct: 210 DVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELY 269
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKHAYD 247
++MI+S P + + ++ GL H L KK F+ + FP Y+
Sbjct: 270 KEMIQSSVDPNNVTYNSIINGLCMHGRLYD-AKKTFDLMASKGCFPNVVTYN 320
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%)
Query: 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190
I+ + Y+P+ +Y LI L + G++N A+++ M K+ L D TY ++ G
Sbjct: 165 ILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYS 224
Query: 191 GSPADAMNIYEDMIKSPDPPEELPFRILL 219
G +DA + DM+K P+ + F L+
Sbjct: 225 GRWSDAARMLRDMMKRSINPDVVTFTALI 253
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++F + K+ + DA Y LI L+ +G+ +A ++ M K + P+ +T +I
Sbjct: 728 ALEVFYCMEKKG-IRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALI 786
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
F+K+G+ +A N+Y++MI+ P + L+ G H L
Sbjct: 787 DTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCL 830
Score = 47.0 bits (110), Expect = 0.008, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+ IY +I L + +N A++V+ M K+ + D+ TY +I G G DA
Sbjct: 705 FVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAA 764
Query: 198 NIYEDMIKSPDPPEELPFRILL 219
+ DM+K P + F L+
Sbjct: 765 RLLRDMVKRKIDPNVIFFTALI 786
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187
+FD++ + + PD Y LI ++ ++ + M+++ M + L D+ TY +I G+
Sbjct: 836 MFDLMVSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGY 894
Query: 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ G A ++ M+ P+ + + ILL L
Sbjct: 895 CQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCL 929
Score = 42.7 bits (99), Expect = 0.14, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 7/113 (6%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+++++ P+ + LI + G + EA +++ M + + P+ TY +I GF
Sbjct: 769 DMVKRK--IDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 826
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G DA +++ M+ P+ + + L+ G +SK +D +LF E
Sbjct: 827 HGCLGDAKYMFDLMVSKGCFPDVVTYNTLITG-----FCKSKRVEDGMKLFCE 874
Score = 42.0 bits (97), Expect = 0.24, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y LI + GK+N A +V+ M + PD TY ++ +G A+ +
Sbjct: 883 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 942
Query: 201 EDMIKSPDPPEELPFRILLKGL 222
ED+ KS + + + I+++GL
Sbjct: 943 EDLQKSEMDVDIITYNIIIQGL 964
Score = 41.2 bits (95), Expect = 0.41, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K FD++ + + P+ Y LI + ++E M++++ M E D TY +I
Sbjct: 300 AKKTFDLMASKGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLI 358
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
G+ + G A++I+ M+ P+ + ILL GL
Sbjct: 359 HGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGL 396
Score = 40.4 bits (93), Expect = 0.73, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ L GK+ +A+ + E ++K ++ D TY +I+G + +A +
Sbjct: 917 PDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCL 976
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEE--LFPEKHAYD 247
+ + + P+ + + ++ GL L R K+ + +E P + YD
Sbjct: 977 FRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYD 1028
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI G + +A +++ M + FPD TY +I GF K D M +
Sbjct: 812 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 871
Query: 200 YEDM 203
+ +M
Sbjct: 872 FCEM 875
>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
Length = 671
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 92 KLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151
K+ + + L+ K+ ++ E +Q A+ +FD + ++ PD Y LI
Sbjct: 413 KVLRMATSQGLKFDKITYTILITEHCKQGHITYALDLFDRM-VENGCCPDIEAYTSLIST 471
Query: 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211
+ +M E+ + ++ L P QTYT +I G+ K G A+ ++E M+++ +
Sbjct: 472 YCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFAD 531
Query: 212 ELPFRILLKGLLPHPLL 228
+ + L+ GL L
Sbjct: 532 SITYGALISGLCKESRL 548
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182
+ A K+FD + + PD ++ L++ R GK+ E + +M + D+ T T
Sbjct: 163 VYARKVFDGMTRAG-VCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTV 221
Query: 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
V+R + G D + M+++ PP + + + GL R VK+ F L
Sbjct: 222 VVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCK----RRYVKQAFHVL 274
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + K Y+P+ + Y +I R GK+ A + M ++ L P++ TYT +I
Sbjct: 305 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 364
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K GS A + M + P + ++ G
Sbjct: 365 GGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFC 403
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I + G+ A++V+E M + F DS TY +I G K+ +A +
Sbjct: 495 PTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKAL 554
Query: 200 YEDMIKSPDPPEELP 214
YE M+ P E+
Sbjct: 555 YEGMLDKRLVPCEVT 569
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
KQ+ + P+ Y Y +I + GK+ EA +V + L D TYT +I K G
Sbjct: 384 KQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 443
Query: 194 ADAMNIYEDMIKSPDPPE 211
A+++++ M+++ P+
Sbjct: 444 TYALDLFDRMVENGCCPD 461
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI + G + A ++ M++E P+ TY VI GF K G +A
Sbjct: 354 KPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYK 413
Query: 199 I 199
+
Sbjct: 414 V 414
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L +Q + A I + + + ++ D Y LI L + G+ A++V MR
Sbjct: 536 SILTHYCKQGDIKKAADILETM-TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 594
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + P + Y V++ + + DA++++ +M + +PP+ L ++I+ +GL
Sbjct: 595 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 647
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++A L R EE + D+ R+ PD Y + LI AL + G + A++++E
Sbjct: 362 LIAALCTGNRLEEAL------DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M+ PD TY +I G A+++ +DM + P + + ++ GL
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ Q+ + PD + Y ++ L + G++ EA + M PD T+ +I
Sbjct: 305 ALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELF 240
+A+++ + P+ F IL+ L PH LR FEE+
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL-----FEEM- 417
Query: 241 PEKHAYDPPEEI 252
K++ P+E+
Sbjct: 418 --KNSGCTPDEV 427
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI AL ++ EA+ + + + + PD T+ +I K G P A+ +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+M S P+E+ + L+ L
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLC 437
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + L+ AL R ++ A+ + E M + PD T+T +++GF+++GS A+
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M++ ++ +L+ G
Sbjct: 238 VKARMLEMGCSATKVTVNVLING 260
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D ++PD Y + L + + A++V + M +E PD TY V+ K+G +
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A I M+ P+ F L+ L
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALC 367
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAY 143
+ D +K ++T ++D+V LI L + T +A+K+ +R + +P
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM-RPTPK 602
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYED 202
Y ++ +L R + +A+ ++ M + PD+ TY V RG + G P +A + +
Sbjct: 603 AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLE 662
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M+ PE FR+L +GLL
Sbjct: 663 MVDKGFIPEFSSFRMLAEGLL 683
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 68/142 (47%), Gaps = 8/142 (5%)
Query: 112 VLIELERQEETILAVK-IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
LI+ ++E +LA K F+ +++Q +P+ Y LI L+ GK++EA+ +W+ M
Sbjct: 278 TLIDGFCKDENVLAAKNAFEEMQRQG-LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVG 336
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL-----KGLLPH 225
L P+ T+ +I GF K +A +++D+ + P + F ++ G++
Sbjct: 337 LGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEE 396
Query: 226 PLLRSKVKKDFEELFPEKHAYD 247
D E +FP Y+
Sbjct: 397 GFALHNSMLD-EGIFPNVSTYN 417
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+FD I +QD P+A + +I A + G M E + SM E +FP+ TY +I
Sbjct: 362 ARKLFDDIAEQDLV-PNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLI 420
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G ++ + A + +M + + + IL+ G
Sbjct: 421 AGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGG 457
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP----- 193
QP+ + I L + GK+N+A V E ++ P+ TY +I G K GS
Sbjct: 197 QPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYR 256
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
ADA I ++M+ + P E+ F L+ G + + K FEE+
Sbjct: 257 ADA--ILKEMLANKICPNEITFNTLIDGFCKDENVLA-AKNAFEEM 299
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 138 YQPDAYIYKDLIIALAR---TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+ P+ Y LI + GKM A + + M + P+ T+ +I GF KD +
Sbjct: 231 FSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFCKDENVL 290
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGL 222
A N +E+M + P + + L+ GL
Sbjct: 291 AAKNAFEEMQRQGLKPNIVTYNSLINGL 318
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y L+ G + A++V M KE + TY +I+GF K G DA
Sbjct: 480 KPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANR 539
Query: 199 IYEDMIKSPDPPEELPFRI-----LLKGLLP 224
+ +M++ P + + L KG +P
Sbjct: 540 LLNEMLEKGLNPNRTTYDVVRLEMLEKGFIP 570
>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 864
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 52/98 (53%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+FD++ ++ P++ Y LI L G++ EA + + M ++ P ++TYT +I
Sbjct: 249 ALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLI 308
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ G A N++++MI P + +L+ GL
Sbjct: 309 KALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGL 346
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 41/84 (48%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y LI L R GK+ EA V M K+ +FP TY +I G+ KDG A
Sbjct: 333 KPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFE 392
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ M K P F L++GL
Sbjct: 393 LLTVMEKRACKPNVRTFNELMEGL 416
Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP Y LI AL G +++A +++ M P+ TYT +I G +DG +A
Sbjct: 298 QPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANG 357
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-FPEKHAYDPPEEIFGKL 256
+ M+K P + + L+ G +V FE L EK A P F +L
Sbjct: 358 VCRKMVKDGIFPSVITYNALINGYCKD----GRVVPAFELLTVMEKRACKPNVRTFNEL 412
Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L R G MN A ++ SM DL PD T+T +I F K G A
Sbjct: 439 PDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAF 498
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
M++ +E+ L+ G+
Sbjct: 499 LGLMLRKGISLDEVTGTTLIDGV 521
Score = 40.8 bits (94), Expect = 0.60, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y +I L + G++ EA ++ +M+ + P+ TYT +++G++ +G A+
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
M++ + + LL+G +
Sbjct: 674 VRAMVERGYELNDRIYSSLLRGFV 697
Score = 38.9 bits (89), Expect = 2.2, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y L+ L R+G ++ + ++ E M+ P+ YT +I G + G +A +
Sbjct: 579 PSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKL 638
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
M S P + + +++KG
Sbjct: 639 LSAMQDSGVSPNHVTYTVMVKG 660
>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
chloroplastic-like [Vitis vinifera]
Length = 746
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y L+ L R GK+ A V + M K+ +L P+ TYT +IRG+ A+A+
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M+ P ++ + L++GL
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLC 354
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + K+ P +Y K LI+ R G + M + D PD++TY +I
Sbjct: 475 AERVFRQLMKRGTQDPPSY--KTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMI 532
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G LK G P A E M+KS P F +L L+
Sbjct: 533 DGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALV 571
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ T +A ++FD + PD Y + LI ++E ++ M + PD
Sbjct: 212 KRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDV 271
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMI-KSPD-PPEELPFRILLKG 221
TY ++ G + G A N+ + M+ KSP+ P + + L++G
Sbjct: 272 VTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRG 317
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD LI A GK+ EA V+E M + + PDS TY+ ++R + G A
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEF 436
Query: 200 YEDM 203
++++
Sbjct: 437 FDEL 440
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
++K+F + K+ P + L+ + + G+ + A Q+++ M + PD+ T+ +
Sbjct: 184 SIKVFKTM-KEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNIL 242
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKD 235
IRGF + + +++M + P+ + + L+ GL + H +++ VKK
Sbjct: 243 IRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKS 301
>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
Length = 708
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 88 DDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147
D+ +L + H L+ + ++ RQ +T ++ F+ + K + PD + Y
Sbjct: 452 DEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVG-FTPDIHSYTT 510
Query: 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
LI R +M E+ +++E L P +TYT +I G+ + G+ + A+ +++ M
Sbjct: 511 LISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHG 570
Query: 208 DPPEELPFRILLKGLL 223
P+ + + L+ GL
Sbjct: 571 CAPDSITYGALISGLC 586
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + D Y+P+ + Y +I + K+N A + M+++ L P++ TYT +I
Sbjct: 348 AFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLI 407
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G+ A + + M K P + ++ GL
Sbjct: 408 DGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLC 446
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I R G + A+++++ M PDS TY +I G K+ DA N+
Sbjct: 538 PTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNL 597
Query: 200 YEDMIKSPDPPEELP 214
Y+ M+ P E+
Sbjct: 598 YDAMMDKGLSPCEVT 612
Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 6/118 (5%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++ D++ K+ + P+ Y Y +I L + G ++EA ++ + L D TYT ++
Sbjct: 419 AYELMDLMGKEG-FSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILM 477
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+ ++ + M+K P+ + L+ R K K+ E LF E
Sbjct: 478 SVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLIS-----XFCRQKQMKESERLFEE 530
>gi|357138495|ref|XP_003570827.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Brachypodium distachyon]
Length = 381
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 128 IFDIIR--KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185
+ ++R K D PD Y L+ LAR G + +A ++M E FPD TYT ++
Sbjct: 207 VLGVLRRMKGDGVDPDLVTYNTLVFGLARAGMVAKARTYVDAMAAEGHFPDVITYTSLMN 266
Query: 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G G A+ + E+M P + LL GL
Sbjct: 267 GMCVKGDALGALKLLEEMEAKGCEPNARTYNTLLMGLC 304
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L +Q + A I + + + ++ D Y LI L + G+ A++V MR
Sbjct: 536 SILTHYCKQGDIKKAADILETM-TANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRI 594
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + P + Y V++ + + DA++++ +M + +PP+ L ++I+ +GL
Sbjct: 595 KGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLC 647
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWE 166
++A L R EE + D+ R+ PD Y + LI AL + G + A++++E
Sbjct: 362 LIAALCTGNRLEEAL------DLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFE 415
Query: 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M+ PD TY +I G A+++ +DM + P + + ++ GL
Sbjct: 416 EMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLC 472
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 13/132 (9%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+K+ D++ Q+ + PD + Y ++ L + G++ EA + M PD T+ +I
Sbjct: 305 ALKVMDVM-VQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLI 363
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVKKDFEELF 240
+A+++ + P+ F IL+ L PH LR FEE+
Sbjct: 364 AALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL-----FEEM- 417
Query: 241 PEKHAYDPPEEI 252
K++ P+E+
Sbjct: 418 --KNSGCTPDEV 427
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI AL ++ EA+ + + + + PD T+ +I K G P A+ +
Sbjct: 354 PDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRL 413
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+E+M S P+E+ + L+ L
Sbjct: 414 FEEMKNSGCTPDEVTYNTLIDNLC 437
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + L+ AL R ++ A+ + E M + PD T+T +++GF+++GS A+
Sbjct: 178 KPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALR 237
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M++ ++ +L+ G
Sbjct: 238 VKARMLEMGCSATKVTVNVLING 260
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D ++PD Y + L + + A++V + M +E PD TY V+ K+G +
Sbjct: 280 DGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A I M+ P+ F L+ L
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALC 367
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 87 KDDEEKLQKFIKTHVLRLLKMDIV--AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAY 143
+ D +K ++T ++D+V LI L + T +A+K+ +R + +P
Sbjct: 544 QGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGM-RPTPK 602
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYED 202
Y ++ +L R + +A+ ++ M + PD+ TY V RG + G P +A + +
Sbjct: 603 AYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLE 662
Query: 203 MIKSPDPPEELPFRILLKGLL 223
M+ PE FR+L +GLL
Sbjct: 663 MVDKGFIPEFSSFRMLAEGLL 683
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++FD + Q + +A + LI L + K+++A ++ M E L P++ TY ++
Sbjct: 480 AEEVFDQMDLQGISR-NAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSIL 538
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELF 240
+ K G A +I E M + + + + L+ GL + +K + +
Sbjct: 539 THYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMR 598
Query: 241 PEKHAYDP 248
P AY+P
Sbjct: 599 PTPKAYNP 606
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PDA+ Y L+ L + ++ EA + + M L P+ Y ++ GF+K+G A+A +I
Sbjct: 311 PDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDI 370
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLL--RSKVKKDFEE--LFPEKHAYDP 248
++MI + P ++ + L++GL L SK+ K+ + L P+ Y+P
Sbjct: 371 LKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNP 423
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + D + K+ +P Y LI R+G ++ A V++S+ + L P+ TYT +I
Sbjct: 682 AVGLLDEMAKEG-LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALI 740
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G K+G DA ++Y++M+ P+ + +L G
Sbjct: 741 DGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATG 777
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PD + Y LI L+ G+M EA + + ++K L PD TY+ +I G+ K G+ A
Sbjct: 520 HPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQ 579
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ M+ S P + LL+G
Sbjct: 580 LLRQMLNSGLKPNADTYTDLLEG 602
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI +TG + +A Q+ M L P++ TYT+++ G+ K +I
Sbjct: 556 PDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSI 615
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ M+ S D P+ + I+++ L
Sbjct: 616 LQSMLGSGDKPDNHIYGIVIRNL 638
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171
V+ L R E +A + + K PD +IY LI L + M +A+ + + M KE
Sbjct: 634 VIRNLSRSENMEVAFMVLTEVEKNGLV-PDLHIYSSLISGLCKIADMEKAVGLLDEMAKE 692
Query: 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
L P Y +I GF + G + A N+++ ++ P + + L+ G
Sbjct: 693 GLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDG 742
Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 39/83 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y Y I A + + A +V+E MR+ D + TY +I G + G+ +A
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E+M+ P+ + L+ GL
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGL 323
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A++Y LII ++ G ++ A + E M K ++ PD Y +I+G G +A
Sbjct: 485 KPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEE 544
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
Y + K P+E + L+ G
Sbjct: 545 YYAQVQKRGLVPDEFTYSGLIHG 567
Score = 44.3 bits (103), Expect = 0.044, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 129 FDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
FDI+++ QP+ +Y +LI L + G++ A ++ + M K L PD+ TY +++G
Sbjct: 368 FDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQG 427
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ A + +M S P + I++ GL
Sbjct: 428 HFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGL 463
Score = 44.3 bits (103), Expect = 0.048, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y Y +I L + G+ EA + E M E L P++ Y +I G K+G+ + A
Sbjct: 451 PNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEA 510
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
E M K+ P+ + L+KGL
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGL 533
Score = 42.4 bits (98), Expect = 0.19, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 39/83 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ +Y L+ + GK EA + + M + P+ Y +IRG K G A
Sbjct: 345 KPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASK 404
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ ++MIK P+ + L++G
Sbjct: 405 LLKEMIKVGLRPDTFTYNPLMQG 427
Score = 42.0 bits (97), Expect = 0.26, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 39/84 (46%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD +IY +I L+R+ M A V + K L PD Y+ +I G K A+
Sbjct: 625 KPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG 684
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ ++M K P + + L+ G
Sbjct: 685 LLDEMAKEGLEPGIVCYNALIDGF 708
>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Brachypodium distachyon]
Length = 726
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
+ Y + +I R G++ EA++V+++M+K L PD+ +Y+ ++ G K G ++
Sbjct: 280 NTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLL 339
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+M ++ P + + LL GL
Sbjct: 340 VEMARNGIAPTLVSYSSLLHGLC 362
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
++L L R + LA ++F + +Q ++ D +Y ++ + + +W M
Sbjct: 356 SLLHGLCRAGKVELAFELFRRLEEQG-FKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVH 414
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ PD+ YT +I F + + DA+ ++E M+ S P + IL+ G
Sbjct: 415 HNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGF 466
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
DA++Y LI ++ M+ A + E M + L P TYT +I G+ K G A
Sbjct: 628 SADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANM 687
Query: 199 IYEDMIKSPDPPE 211
Y M+++ P+
Sbjct: 688 TYNSMLQAGITPD 700
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A Y + L+RT ++ A + + + ++ + VI+GF ++G +A+
Sbjct: 243 KPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIE 302
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+++ M K P+ + IL+ GL
Sbjct: 303 VFDAMKKGGLVPDTHSYSILVDGLC 327
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD +Y LI+ + M A++++ M K L D+ YT +I GF K + A +
Sbjct: 594 PDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGLSADAFLYTCLIGGFSKVLAMDGAQCL 653
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
E+M P + + L+ G
Sbjct: 654 MEEMTNKGLTPSVVTYTNLIIG 675
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PDAY Y LI A R + +A+ V+E M + P+ T T ++ GF K+ +A
Sbjct: 417 FVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAF 476
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ + P +R+++ GL
Sbjct: 477 LFLHKVRQFGIVPNLCMYRVIINGLC 502
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ +Y+ +I L + K + ++ M K PD+ Y+ +I F+K +A +
Sbjct: 489 PNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRL 548
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ M+ P + L+ GL
Sbjct: 549 FHKMLDEGTKPNVFTYTSLINGLC 572
>gi|296089633|emb|CBI39452.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAM 197
PD Y L+ L R GK+ A V + M K+ +L P+ TYT +IRG+ A+A+
Sbjct: 269 PDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEAL 328
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
++ +M+ P ++ + L++GL
Sbjct: 329 SLLAEMVSRGLKPNKITYNTLIQGLC 354
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + K+ P +Y K LI+ R G + M + D PD++TY +I
Sbjct: 475 AERVFRQLMKRGTQDPPSY--KTLILGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMI 532
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G LK G P A E M+KS P F +L L+
Sbjct: 533 DGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAALV 571
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
++ T +A ++FD + PD Y + LI ++E ++ M + PD
Sbjct: 212 KRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDV 271
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMI-KSPD-PPEELPFRILLKG 221
TY ++ G + G A N+ + M+ KSP+ P + + L++G
Sbjct: 272 VTYNTLVDGLCRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRG 317
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191
PD LI A GK+ EA V+E M + + PDS TY+ ++R + G
Sbjct: 377 PDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRG 428
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEV 183
++K+F + K+ P + L+ + + G+ + A Q+++ M + PD+ T+ +
Sbjct: 184 SIKVFKTM-KEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNIL 242
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL-------LPHPLLRSKVKKD 235
IRGF + + +++M + P+ + + L+ GL + H +++ VKK
Sbjct: 243 IRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKS 301
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A IF+ + Q PD + Y +I + ++EAM+++E M + +FPD TY +I
Sbjct: 333 AESIFNTM-AQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLI 391
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G + A+ + +M PP + + LL L
Sbjct: 392 DGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALC 430
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P Y + L+ A + GK+ EA V+ M K+D+ P+ TY ++ G+ A +
Sbjct: 276 NPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAES 335
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKHAYDP 248
I+ M + P+ + I++ G ++ +K FEE+ FP+ Y+
Sbjct: 336 IFNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKL-FEEMHCKQIFPDVVTYNS 389
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +F ++ K+D +P+ Y L+ ++N+A ++ +M + + PD +Y+ +I
Sbjct: 298 AKNVFVVMMKKDV-KPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMI 356
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
GF K +AM ++E+M P+ + + L+ GL
Sbjct: 357 SGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLC 395
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L G++ +A+ + M E++ P T++ ++ F K+G +A N+
Sbjct: 242 PTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNV 301
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF---------PEKHAYDPPE 250
+ M+K P + + L+ G L ++V K E +F P+ H+Y
Sbjct: 302 FVVMMKKDVKPNIVTYNSLMNGY----CLVNEVNKA-ESIFNTMAQIGVAPDVHSYSIMI 356
Query: 251 EIFGKL 256
F K+
Sbjct: 357 SGFCKI 362
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ Y L+ AL + +++A+++ ++ ++ P TY +I G K G DA +
Sbjct: 417 PNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILINGLCKSGRLKDAQKV 476
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ED++ + + + ++KG
Sbjct: 477 FEDVLVNGYNIDVYTYNTMIKGFC 500
>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g06000-like [Vitis vinifera]
Length = 641
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
+++ K D PD Y +I + GKM +A ++ +M + P++ T+ +I GF K
Sbjct: 297 ELLSKND-LSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGK 355
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
G A N+YE+M+ PP+ + F L+ G
Sbjct: 356 VGDMVSAENMYEEMLLLGCPPDIITFTSLIDG 387
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LII G+++EA+ ++ M PDS T T +I LK G P +A
Sbjct: 480 KPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYR 539
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
I + I S D F + LK L + LR+
Sbjct: 540 IMQ--IASED------FNLGLKSLKRNVPLRTNT 565
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QP ++Y +I + G ++EA + M ++ PD TYT +I G G ++A++
Sbjct: 447 QP--FMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAIS 504
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+ M+ + P+ + L+ LL
Sbjct: 505 IFNRMLGTGCAPDSITMTSLISCLL 529
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A+ + LI + G M A ++E M PD T+T +I G + G ++
Sbjct: 340 KPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLK 399
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++ ++ P E F IL L
Sbjct: 400 LWHELNARNLSPNEYTFAILTNALC 424
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 53/138 (38%), Gaps = 43/138 (31%)
Query: 127 KIFDIIRKQDWYQ--------PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178
K+ D++ ++ Y+ PD + LI RTGK+ ++++W + +L P+
Sbjct: 355 KVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEY 414
Query: 179 T-----------------------------------YTEVIRGFLKDGSPADAMNIYEDM 203
T Y VI GF K G+ +A I +M
Sbjct: 415 TFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEM 474
Query: 204 IKSPDPPEELPFRILLKG 221
+ P+++ + IL+ G
Sbjct: 475 EEKRCKPDKITYTILIIG 492
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++ + + ++ + PD Y + L+ L++TG + A++V + M +E PD TY +I
Sbjct: 284 ALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLI 343
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K G +A+ + MI+ P + + ++ L
Sbjct: 344 SGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLC 382
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+++ D++ ++ + PD Y Y LI L + G+++EA++V M + D P++ TY +I
Sbjct: 320 ALEVMDMMLRE-GFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTII 378
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K+ +A + + P+ + L++GL
Sbjct: 379 STLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLC 417
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 11/131 (8%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A +IFD + Q + ++ Y LI L ++ ++ EA Q+ + M E L PD TY ++
Sbjct: 495 AEEIFDQMELQGVSR-NSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLL 553
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFE 237
F K G A +I + M P+ + + L+ GL LLR+ K
Sbjct: 554 TYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI- 612
Query: 238 ELFPEKHAYDP 248
L P HAY+P
Sbjct: 613 NLTP--HAYNP 621
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI AL R ++ A+ + E M L PD +T+T +++GF+++G+ AM
Sbjct: 192 RPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMR 251
Query: 199 IYEDMIKS 206
+ E M+++
Sbjct: 252 VKEQMVEA 259
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 127 KIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K DI++ D +PD Y LI L + G++ A ++ +++ + + Y VI
Sbjct: 564 KAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVI 623
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + +A+ ++ +MI+ + P+ + ++I+ +GL
Sbjct: 624 QALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLC 662
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ + + ++D P+ Y +I L + ++ EA ++ + + + PD TY +I
Sbjct: 355 AVKVLNQMIERDC-SPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLI 413
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+G + AM +Y++M P+E + +L+ L
Sbjct: 414 QGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLC 452
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 40/90 (44%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K PD + Y LI +L GK+ EA+ + + M + TY +I GF K+
Sbjct: 433 KTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRI 492
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A+A I++ M + + L+ GL
Sbjct: 493 AEAEEIFDQMELQGVSRNSVTYNTLIDGLC 522
Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADAMNIYE 201
+ Y +I AL R + EA++++ M ++ PD+ TY V RG + G P +A++
Sbjct: 617 HAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVM 676
Query: 202 DMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+M++ PE F +L +GL ++ + +K
Sbjct: 677 EMLERGYVPEFSSFYMLAEGLFSLAMVGTLIK 708
Score = 41.2 bits (95), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y LI L + AM++++ M+ + PD TY +I G +A+N+
Sbjct: 404 PDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNL 463
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
++M S + + L+ G ++K + EE+F +
Sbjct: 464 LKEMEVSGCARNVITYNTLIDG-----FCKNKRIAEAEEIFDQ 501
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L R KM+E++Q+ E M + L PDS TY +I+ F K A+ +
Sbjct: 619 PTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQL 678
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y M+ P ++ +++L+ L
Sbjct: 679 YNMMLLHNCDPTQVTYKVLINAL 701
Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
+E L + K +V+ M +++ L ++ R EE + + +R +PD +Y LI
Sbjct: 400 QETLSRGFKLNVI-FYNM-LLSCLCKVGRIEEALTLFDEMETLR----LEPDFIVYSILI 453
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
L + G + A Q++E MR + FP V+ G K+G+ ++A N ++ +
Sbjct: 454 HGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLM 513
Query: 210 PEELPFRILLKG 221
+ + + I++ G
Sbjct: 514 EDVVLYNIMIDG 525
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++ + Y L+ L + G++ EA+ +++ M L PD Y+ +I G K+G A
Sbjct: 407 FKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAY 466
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+YE M P R +L GL
Sbjct: 467 QLYEQMRLKRKFPHHFAQRAVLLGLF 492
Score = 41.2 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + LI R G + EA ++ E +R + L P TYT ++ + + G+ + +
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+M + P + + +L+KGL
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGL 631
Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D++ Y L+ L G M+EA+ + M K + PD TY + +GFL G + A +
Sbjct: 305 DSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVV 364
Query: 201 EDMIKSPDPPEELPFRILLKG 221
+ M+ P+ + + L+ G
Sbjct: 365 QKMLLQGLNPDLVTYTTLICG 385
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y LI L R KM+E++Q+ E M + L PDS TY +I+ F K A+ +
Sbjct: 619 PTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQL 678
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
Y M+ P ++ +++L+ L
Sbjct: 679 YNMMLLHNCDPTQVTYKVLINAL 701
Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 90 EEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
+E L + K +V+ M +++ L ++ R EE + + +R +PD +Y LI
Sbjct: 400 QETLSRGFKLNVI-FYNM-LLSCLCKVGRIEEALTLFDEMETLR----LEPDFIVYSILI 453
Query: 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209
L + G + A Q++E MR + FP V+ G K+G+ ++A N ++ +
Sbjct: 454 HGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLM 513
Query: 210 PEELPFRILLKG 221
+ + + I++ G
Sbjct: 514 EDVVLYNIMIDG 525
Score = 42.4 bits (98), Expect = 0.18, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++ + Y L+ L + G++ EA+ +++ M L PD Y+ +I G K+G A
Sbjct: 407 FKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAY 466
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+YE M P R +L GL
Sbjct: 467 QLYEQMRLKRKFPHHFAQRAVLLGLF 492
Score = 41.2 bits (95), Expect = 0.44, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P + LI R G + EA ++ E +R + L P TYT ++ + + G+ + +
Sbjct: 549 PSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+M + P + + +L+KGL
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGL 631
Score = 40.8 bits (94), Expect = 0.55, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 40/81 (49%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D++ Y L+ L G M+EA+ + M K + PD TY + +GFL G + A +
Sbjct: 305 DSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVV 364
Query: 201 EDMIKSPDPPEELPFRILLKG 221
+ M+ P+ + + L+ G
Sbjct: 365 QKMLLQGLNPDLVTYTTLICG 385
>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
Length = 645
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P++ IY LI L G+ EA +++ MRK + PDS TYT +IRG G +AM +
Sbjct: 551 PNSVIYMTLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMML 610
Query: 200 YEDMIK 205
Y DM+K
Sbjct: 611 YADMMK 616
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
AVL L + A ++FD + ++ P Y LI A G + +A +VW+ M
Sbjct: 156 AVLDGLVKARRPGCAWELFDEMLRRGLV-PSVVTYNTLINACRFQGTVAKAQEVWDQMVA 214
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
+ + P+ TYT +I ++G DA +++ M ++ P + + +L+ G + S
Sbjct: 215 QQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNS 274
Query: 231 KVKKDFEELFPEKHAYDPPEEIFGKL 256
V ++EL K +P IF L
Sbjct: 275 AVVL-YQELL--KSGLNPNAVIFTTL 297
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y LI ++ GKM AM ++ M + + P+ TYT +I G K+G A
Sbjct: 428 EPNVVSYSSLIDGHSKRGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFR 487
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
++++MI++ P + +L+ GL
Sbjct: 488 LHKEMIENGISPNAITVSVLVDGLC 512
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 112 VLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
LI R + T+ A +++D + Q P+ Y +I AL G + +A +++++M++
Sbjct: 191 TLINACRFQGTVAKAQEVWDQMVAQQ-IDPNVVTYTTMICALCEEGCIGDAERLFDAMKE 249
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ P+ TY ++ G + A+ +Y++++KS P + F L+ G
Sbjct: 250 AGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVIFTTLIDGFC 302
Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+A I+ LI + + +EA ++ M + + P Y ++ G + G+ +A+
Sbjct: 288 NPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALA 347
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+Y++M + P+E I+++GL
Sbjct: 348 LYQEMTRLGLCPDEFTCSIVVRGLC 372
>gi|302761046|ref|XP_002963945.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
gi|300167674|gb|EFJ34278.1| hypothetical protein SELMODRAFT_82351 [Selaginella moellendorffii]
Length = 376
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + + AL + ++EA QV+E ++K+ L PD+ TYT +I G G A++
Sbjct: 267 SPELVHFNSFMSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALS 326
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ + MI++ P+ + + IL G LL++ + D E+L
Sbjct: 327 LKDTMIQNNCKPDSVTYGILRAG-----LLKAGRRTDAEQL 362
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + D++ ++ P A +Y LI L + GK+ EA ++ +M K P TY +I
Sbjct: 83 ALAVLDVMAERGCIPP-AIVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLI 141
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL----- 239
G G +A + ++M S P+ + + +L+ L R+ V F+E+
Sbjct: 142 NGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFRAAVDV-FDEMVSKGG 200
Query: 240 -FPEKHAYDP 248
P++ +Y P
Sbjct: 201 CVPDRASYMP 210
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++++ ++K+ PD Y Y LI L G+ ++A+ + ++M + + PDS TY +
Sbjct: 289 AFQVYEQLQKKGLV-PDTYTYTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTYGILR 347
Query: 185 RGFLKDGSPADAMNIYEDM 203
G LK G DA + M
Sbjct: 348 AGLLKAGRRTDAEQLKAQM 366
>gi|302757529|ref|XP_002962188.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
gi|300170847|gb|EFJ37448.1| hypothetical protein SELMODRAFT_60915 [Selaginella moellendorffii]
Length = 535
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 82/177 (46%), Gaps = 27/177 (15%)
Query: 99 THVLRLLKMDIVAV-------------LIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145
THVLRL MD AV ++ R EE A++++ I K D P Y
Sbjct: 336 THVLRL--MDKAAVKPNRYIYTMIMDGFVKSSRLEE---ALELYQRILK-DGILPSTVTY 389
Query: 146 KDLIIALARTGKMNEAMQVWESM--RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+I AL + KM+EA+++ M RKE+L P TY+ +I G K G A ++ +M
Sbjct: 390 NTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEERAFDLLAEM 449
Query: 204 IKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL-----FPEKHAYDPPEEIFGK 255
I + P+ + L++ L + S+ + EE+ FP+ H Y +I +
Sbjct: 450 IDNGVIPDCFTYTSLIQTLAGAGKV-SRAMELLEEMLKAGIFPDDHTYGTLVQILCR 505
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI LA GK++ AM++ E M K +FPD TY +++ + A A ++
Sbjct: 456 PDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTLVQILCRSDVDA-AWDL 514
Query: 200 YEDMIKSPDPPEELPFRILLK 220
++M+++ P E F+ + K
Sbjct: 515 LQEMMRNGHTPNEFTFKAVEK 535
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IV I + + EE A + + + +D PD Y I AL G+ EA +V+E+M
Sbjct: 252 IVTGYIGMGKVEE---AFAVMEEMADRDC-APDTISYTMFIEALYSIGRREEAEKVFETM 307
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
++ PD TY +I F K+GS A A ++ M K+ P + +++ G + L
Sbjct: 308 VEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMIMDGFVKSSRL 367
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169
+ L + R+EE A K+F+ + ++ +PD + Y +I + G M A V M
Sbjct: 288 IEALYSIGRREE---AEKVFETMVEKGC-KPDMHTYGIIIDNFCKEGSMAAATHVLRLMD 343
Query: 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
K + P+ YT ++ GF+K +A+ +Y+ ++K P + + ++ L
Sbjct: 344 KAAVKPNRYIYTMIMDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALC 397
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177
R EE A ++F+ I PD+ Y ++ L + G + ++ +E M P
Sbjct: 90 RTEE---ACRLFEAIE-----APDSVTYTAIVDGLFKAGNYDAGLEYYEKMVASKCEPTL 141
Query: 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
TYT ++ G K A +++E+MI+ P+ + + L+ GL
Sbjct: 142 LTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGL 186
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 84 KRFKDDEEKLQKFIKTHVL--RLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPD 141
R ++ E Q+ +K +L + ++ L +L++ +E + ++ ++ R+++ +P
Sbjct: 365 SRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLR--EMQRRKEELEPS 422
Query: 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201
Y +I L + G A + M + PD TYT +I+ G + AM + E
Sbjct: 423 IVTYSMIIHGLGKVGMEERAFDLLAEMIDNGVIPDCFTYTSLIQTLAGAGKVSRAMELLE 482
Query: 202 DMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE--KHAYDPPEEIF 253
+M+K+ P++ + G L L RS V + +L E ++ + P E F
Sbjct: 483 EMLKAGIFPDDHTY-----GTLVQILCRSDVDAAW-DLLQEMMRNGHTPNEFTF 530
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P A Y ++ L + G++ EA++ + MR+ L P TY+ ++ G++ G +A +
Sbjct: 209 PTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKVEEAFAV 268
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF-----PEKHAY 246
E+M P+ + + + ++ L R + +K FE + P+ H Y
Sbjct: 269 MEEMADRDCAPDTISYTMFIEALYSIG-RREEAEKVFETMVEKGCKPDMHTY 319
Score = 41.6 bits (96), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y L+ L + K+ A V+E M ++ PD Y+ +I G K G +A
Sbjct: 138 EPTLLTYTVLVDGLCKAHKVERACDVFEEMIRKGHKPDIIAYSSLIDGLSKAGRVDEARK 197
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ + MI PP + + ++ GL ++ VK
Sbjct: 198 LVDLMIARGPPPTAVAYTSIVAGLCKCGRIQEAVK 232
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
IVA L + R +E + ++ ++ R++ + D Y + ++ GK+ EA V E M
Sbjct: 217 IVAGLCKCGRIQEAVKTIQ--EMRRRRLRPRVDTYSF--IVTGYIGMGKVEEAFAVMEEM 272
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
D PD+ +YT I G +A ++E M++ P+ + I++
Sbjct: 273 ADRDCAPDTISYTMFIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIII 323
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 91 EKLQKFIKTHVLRLLK--MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148
E+ +K +T V + K M ++I+ +E ++ A + + +P+ YIY +
Sbjct: 298 EEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHVLRLMDKAAVKPNRYIYTMI 357
Query: 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208
+ ++ ++ EA+++++ + K+ + P + TY VI K +A+ + +M + +
Sbjct: 358 MDGFVKSSRLEEALELYQRILKDGILPSTVTYNTVINALCKLKKMDEALELLREMQRRKE 417
Query: 209 --PPEELPFRILLKGL 222
P + + +++ GL
Sbjct: 418 ELEPSIVTYSMIIHGL 433
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + LI L GK++EA+ V E M + +FPD Y +I G K A
Sbjct: 410 HTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAK 469
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
NI E+M++ P+E + L+ G +RS+ D ++F
Sbjct: 470 NILEEMLEKNVQPDEFVYATLIDG-----FIRSENLGDARKIF 507
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 109 IVAVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+ A LI+ R E A KIF+ + + +PD +I + G M+EA+ +
Sbjct: 486 VYATLIDGFIRSENLGDARKIFEFMEHKG-VRPDIVSCNAMIKGYCQFGMMSEAILCMSN 544
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
MRK PD TYT VI G+ K G+ A+ DMIK P + + L+ G
Sbjct: 545 MRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLING 598
Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI L + G + + ++ MRK L P+ Q Y VI K S AM
Sbjct: 270 FLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 329
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
I + M S P+ + F L+ GL LR +++ EL P + +Y P
Sbjct: 330 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRR---ELNPNQLSYTP 384
Score = 43.9 bits (102), Expect = 0.068, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 44/83 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD ++Y LI R+ + +A +++E M + + PD + +I+G+ + G ++A+
Sbjct: 481 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAIL 540
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+M K P+E + ++ G
Sbjct: 541 CMSNMRKVGCIPDEFTYTTVISG 563
Score = 43.5 bits (101), Expect = 0.080, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y +I A+ G +N A++ M K P+ TY+ +I G+ K G A +
Sbjct: 552 PDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTGDTDSAEGL 611
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M P + + IL+ L
Sbjct: 612 FANMQAEALSPNVVTYTILIGSLF 635
Score = 43.1 bits (100), Expect = 0.12, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI L + + A + E M ++++ PD Y +I GF++ + DA I
Sbjct: 447 PDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 506
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E M P+ + ++KG
Sbjct: 507 FEFMEHKGVRPDIVSCNAMIKG 528
Score = 40.8 bits (94), Expect = 0.63, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L G + +A + +L P+ +YT +I GF G A ++
Sbjct: 342 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 401
Query: 200 YEDMIKSPDPPEELPFRILLKGLL------PHPLLRSKVKKDFEELFPEKHAYD 247
+M+ P+ + F L+ GL+ ++R K+ + ++FP+ + Y+
Sbjct: 402 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE--RQVFPDVNIYN 453
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
D+I+++ +P+ Y LI +TG + A ++ +M+ E L P+ TYT +I K
Sbjct: 579 DMIKRK--CKPNVVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFK 636
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
A +E M+ + P ++ L+ GL
Sbjct: 637 KDKVLRAGLYFETMLLNHCSPNDVTLHYLVNGL 669
>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 819
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI A AR G ++EAM++ M ++ PD TYT ++ GF + G AM
Sbjct: 345 FSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAM 404
Query: 198 NIYEDMIKSPDPPEELPFRILLK 220
+I+E+M + P F +K
Sbjct: 405 SIFEEMRNAGCKPNICTFNAFIK 427
Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 4/146 (2%)
Query: 104 LLKMDIVAVLIELERQEETIL-AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162
+L +VA++I + +E + A +F+ + ++D + D Y Y LI A A +G+ EA+
Sbjct: 170 MLDNSVVAIIISMLGKEGRVSSAANMFNGL-QEDGFSLDVYSYTSLISAFANSGRYREAV 228
Query: 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM-NIYEDMIKSPDPPEELPFRILLKG 221
V++ M ++ P TY ++ F K G+P + + ++ E M P+ + L+
Sbjct: 229 NVFKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLIT- 287
Query: 222 LLPHPLLRSKVKKDFEELFPEKHAYD 247
L + + FEE+ +YD
Sbjct: 288 CCKRGSLHQEAAQVFEEMKAAGFSYD 313
Score = 46.6 bits (109), Expect = 0.010, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 39/86 (45%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K D PDAY Y LI R EA QV+E M+ D TY ++ + K P
Sbjct: 271 KSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRP 330
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+AM + +M+ + P + + L+
Sbjct: 331 KEAMKVLNEMVLNGFSPSIVTYNSLI 356
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + Y L+ R GK+ AM ++E MR P+ T+ I+ + G + M
Sbjct: 381 KPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMK 440
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEEIFGKL 256
I++++ P+ + + LL + + S+V F+E+ ++ + P E F L
Sbjct: 441 IFDEINVCGLSPDIVTWNTLL-AVFGQNGMDSEVSGVFKEM--KRAGFVPERETFNTL 495
Score = 42.0 bits (97), Expect = 0.22, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 38/83 (45%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y +I A R +M +A +++ MR + PD TY I + D +A+
Sbjct: 696 KPDIISYNTVIYAYCRNTRMRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIG 755
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ MIK P + + ++ G
Sbjct: 756 VVRYMIKHGCRPNQNTYNSIVDG 778
Score = 38.5 bits (88), Expect = 2.6, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F+ + K + D Y L+ ++ + EAM+V M P TY +I
Sbjct: 298 AAQVFEEM-KAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLI 356
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+ +DG +AM + M + P+ + LL G
Sbjct: 357 SAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGF 394
Score = 38.1 bits (87), Expect = 3.3, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K+ + P+ + LI A +R G +AM V+ M + PD TY V+ + G
Sbjct: 481 KRAGFVPERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMW 540
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILL 219
+ + +M P EL + LL
Sbjct: 541 EQSEKVLAEMEDGRCKPNELTYCSLL 566
>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
Length = 583
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 137 WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196
+ PD Y Y L+ GK++ A++++E M++ P+ YT +I G K+G A
Sbjct: 487 GFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAA 546
Query: 197 MNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+Y+DM+K+ P++ + L+ L H R VK
Sbjct: 547 FQLYDDMLKAGLIPDDSLYSALVGSL--HTDNRKDVK 581
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 4/110 (3%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D Y Y L L R +++EA + M + + P+ TYT +I KDG +A ++
Sbjct: 386 DIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLF 445
Query: 201 EDMIKSPDPPEELPFRILLKGLLPHPLLR--SKVKKDFEE--LFPEKHAY 246
+M + P + + +++ G +R + +K+ E+ P+ + Y
Sbjct: 446 REMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTY 495
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + D Y+Y +I A R G M A +V + + P+ +TY +I GF K G
Sbjct: 274 KANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQM 333
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS--KVKKDFEELFPEKHAY 246
A + DM ++ F ++ G ++ K+K E++ E Y
Sbjct: 334 EAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIY 388
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 38/83 (45%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I + G + EA + + M K+ PD TY ++ G +G A+ +
Sbjct: 455 PSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKL 514
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+E+M + P + + L+ GL
Sbjct: 515 FEEMKQRGTEPNVVAYTALISGL 537
>gi|302769109|ref|XP_002967974.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
gi|300164712|gb|EFJ31321.1| hypothetical protein SELMODRAFT_88078 [Selaginella moellendorffii]
Length = 376
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
P+ + + AL + ++EA QV+E ++K+ L PD+ TYT +I G G A++
Sbjct: 267 SPELVHFNSFMSALCQRKLISEAFQVYEQLQKKGLVPDTYTYTILIGGLCDVGRTDQALS 326
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
+ + MI++ P+ + + IL GLL
Sbjct: 327 LKDTMIQNNCKPDSVTYGILRAGLL 351
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 8/130 (6%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A+ + D++ ++ P A +Y LI L + GK+ EA ++ +M K P TY +I
Sbjct: 83 ALAVLDVMAERGCIPP-AIVYNQLIDGLCKAGKVEEAFELSTTMVKNGCSPTLYTYNSLI 141
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL----- 239
G G +A + ++M S P+ + + +L+ L ++ V F+E+
Sbjct: 142 NGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFKAAVDV-FDEMVSKGG 200
Query: 240 -FPEKHAYDP 248
P++ +Y P
Sbjct: 201 CVPDRASYMP 210
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 135 QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
++ P Y Y LI L GK +EA + M PD TYT +I +DG+
Sbjct: 127 KNGCSPTLYTYNSLINGLCLQGKTDEARDFLQEMADSGYNPDVVTYTVLINSLRRDGNFK 186
Query: 195 DAMNIYEDMI-KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKH 244
A++++++M+ K P+ + LL GL ++ + F EKH
Sbjct: 187 AAVDVFDEMVSKGGCVPDRASYMPLLIGLCKEGCVQ------LVQEFLEKH 231
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++++ ++K+ PD Y Y LI L G+ ++A+ + ++M + + PDS TY +
Sbjct: 289 AFQVYEQLQKKGLV-PDTYTYTILIGGLCDVGRTDQALSLKDTMIQNNCKPDSVTYGILR 347
Query: 185 RGFLKDGSPADAMNIYEDM 203
G LK G ADA + M
Sbjct: 348 AGLLKAGRRADAEQLKAQM 366
>gi|302780865|ref|XP_002972207.1| hypothetical protein SELMODRAFT_17157 [Selaginella moellendorffii]
gi|300160506|gb|EFJ27124.1| hypothetical protein SELMODRAFT_17157 [Selaginella moellendorffii]
Length = 168
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
++ +LER + +A +FD KQ PD + L+ G +++A ++ E M
Sbjct: 33 LIGGFCKLERID---MACMLFDDTLKQAIL-PDVVTFSTLVEGYCNAGLVDDAERLLEEM 88
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK---SPDPPEELPFRILLKGLLPH 225
D PD TYT ++ GF K G +A + + M K P+ + +R+++ GL
Sbjct: 89 VASDCSPDVYTYTSLVDGFCKVGRMVEACRVLKRMAKRGCQPNVADMFAYRVMMDGLCTT 148
Query: 226 PLLRSKVKKDFEELFPEKHAYDPP 249
++ E L + + PP
Sbjct: 149 ----GRMSAALELLEAIRQSGTPP 168
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K + D +Y LI + +++ A +++ K+ + PD T++ ++ G+ G
Sbjct: 19 KAKFCNLDVIMYSCLIGGFCKLERIDMACMLFDDTLKQAILPDVVTFSTLVEGYCNAGLV 78
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
DA + E+M+ S P+ + L+ G
Sbjct: 79 DDAERLLEEMVASDCSPDVYTYTSLVDGFC 108
>gi|255661036|gb|ACU25687.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
Length = 376
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD ++ LI L GK A+ ++ M + P+ T+ ++ GF KDG +A+
Sbjct: 265 FKPDVQMHNILIHGLCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNAL 324
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLP 224
I+ +++S P+ + + I LKGL
Sbjct: 325 VIWARILRSGLQPDIISYNITLKGLCS 351
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
DA+ Y +I L + K+++A+ V M K P++ Y +I GF+ DA+ ++
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNTLINGFVGASKFDDAIRVF 187
Query: 201 EDMIKSPDPPEELPFRILLKGLL 223
+M P + + L+ GL
Sbjct: 188 REMGSMDCSPTIVTYHTLINGLC 210
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AV + + + K +P+A++Y LI K ++A++V+ M D P TY +I
Sbjct: 148 AVSVLNGMIKSG-CKPNAHVYNTLINGFVGASKFDDAIRVFREMGSMDCSPTIVTYHTLI 206
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
G K ++A ++ ++M++ P + + +L+KGL
Sbjct: 207 NGLCKGERFSEAYDLVKEMLEKGWKPCVITYSLLMKGLC 245
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
PDA +Y ++I R G++ + +WE M ++ + ++ ++RG +G A++
Sbjct: 22 SPDAVVYNAMLIGFLRVGRIKDCFDLWELMGRKG-SQNVVSFNIMMRGLFDNGEVDKAIS 80
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229
I+E M KS + + + I++ G + +
Sbjct: 81 IWELMKKSGFVEDSITYGIIIDGFCKNGYIN 111
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210
L G++++A+ +WE M+K DS TY +I GF K+G ++++ E
Sbjct: 68 GLFDNGEVDKAISIWELMKKSGFVEDSITYGIIIDGFCKNGYINKSLHVLEIAEGKGGVL 127
Query: 211 EELPFRILLKGLLPHP-------LLRSKVKKDFEELFPEKHAYDP 248
+ + ++ GL +L +K + P H Y+
Sbjct: 128 DAFAYSAMINGLCKEAKLDKAVSVLNGMIKSGCK---PNAHVYNT 169
Score = 41.2 bits (95), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Query: 129 FDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
+D++++ + ++P Y L+ L + K+ A+Q+W + + PD Q + +I G
Sbjct: 219 YDLVKEMLEKGWKPCVITYSLLMKGLCQGHKVEMALQLWNQVLSKGFKPDVQMHNILIHG 278
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232
G A+ +Y DM P + L++G +R+ +
Sbjct: 279 LCSVGKTQHALMLYFDMNHWNCAPNLVTHNTLMEGFYKDGDIRNAL 324
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD + Y L+ + R G ++EA+++ M E + P+ TYT ++ GF G +
Sbjct: 203 DGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 262
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + + M + P E +R L+ G+
Sbjct: 263 AFRMLDKMKEKGVAPSEATYRTLVHGVF 290
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 43/85 (50%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+A Y L+ L G +N+A+ + M+ + + PD+ ++ +I F + A +
Sbjct: 521 RPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAED 580
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+ DM++ P+ + L+K L
Sbjct: 581 IFNDMVRFGVVPDSYTYNSLIKALC 605
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 127 KIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K D++ K D PDAY + LI++ R K+++A ++ M + + PDS TY +I
Sbjct: 542 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLI 601
Query: 185 RGFLKD 190
+ +
Sbjct: 602 KALCDE 607
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic; AltName: Full=Protein PROTON GRADIENT
REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
I+ L + R EE A+ +F+ ++ PD Y Y LI+ L G + EA +++ +
Sbjct: 1002 IINGLGKSHRLEE---ALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEI 1058
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-----EELPFR 216
++ L P+ T+ +IRG+ G P A +Y+ M+ P E+LP R
Sbjct: 1059 QRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPNR 1111
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD + LI L + +++EA +++ M++ L P TY ++ G K+G +A+
Sbjct: 535 EPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIE 594
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++E M++ PP + F L L
Sbjct: 595 LFEGMVQKGCPPNTITFNTLFDCL 618
Score = 47.4 bits (111), Expect = 0.005, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 129 FDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188
+D++ +D + P A Y LI L+++G++ EA Q++E M P+ Y +I GF
Sbjct: 879 YDLMSDRD-FSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
K G A +++ M+K P+ + +L+ L
Sbjct: 938 KAGEADAACALFKRMVKEGVRPDLKTYSVLVDCL 971
Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y L+ A ++GK++E ++++ M + ++ T+ VI G +K G+ DA+++
Sbjct: 818 PDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDL 877
Query: 200 YEDMIKSPD-PPEELPFRILLKGL 222
Y D++ D P + L+ GL
Sbjct: 878 YYDLMSDRDFSPTACTYGPLIDGL 901
Score = 44.3 bits (103), Expect = 0.056, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 106 KMDIVAVLIELER--QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163
K D V + L+R + +VK F ++D + PD + L+ AL + G EA
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
+ MR + + P+ TY +I G L+ DA+ ++ +M
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNM 424
Score = 43.9 bits (102), Expect = 0.064, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ Y + I L R GK+NEA ++ + M E PD TYT +I A
Sbjct: 255 KPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKE 314
Query: 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYD 247
++E M P+ + + LL + L S VK+ + E+ + H D
Sbjct: 315 VFEKMKTGRHKPDRVTYITLLDRFSDNRDLDS-VKQFWSEMEKDGHVPD 362
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 116 LERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174
L + +E LA+K+ + + D PD + Y +I L + G++ EAM + M+K ++
Sbjct: 618 LCKNDEVTLALKM--LFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VY 674
Query: 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMI-KSPDPPEELPFRILLKGLL 223
PD T ++ G +K DA I + + D P L + L+ +L
Sbjct: 675 PDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQPANLFWEDLIGSIL 724
Score = 39.3 bits (90), Expect = 1.4, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A D++R Q P+ + Y LI L R ++++A++++ +M + P + TY I
Sbjct: 382 AFDTLDVMRDQG-ILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFI 440
Query: 185 RGFLKDGSPADAMNIYEDM 203
+ K G A+ +E M
Sbjct: 441 DYYGKSGDSVSALETFEKM 459
Score = 39.3 bits (90), Expect = 1.8, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 46/84 (54%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ IY LI + G+ + A +++ M KE + PD +TY+ ++ G + ++
Sbjct: 923 RPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLH 982
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
++++ +S P+ + + +++ GL
Sbjct: 983 YFKELKESGLNPDVVCYNLIINGL 1006
Score = 37.7 bits (86), Expect = 4.2, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 129 FDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186
++I+++ D PD Y LI AL K++ A +V+E M+ PD TY ++
Sbjct: 278 YEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDR 337
Query: 187 FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
F + + +M K P+ + F IL+ L
Sbjct: 338 FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373
Score = 37.4 bits (85), Expect = 5.7, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180
+++ A++ F+ ++ + P+ + +LA+ G+ EA Q++ ++ L PDS TY
Sbjct: 448 DSVSALETFEKMKTKG-IAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTY 506
Query: 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+++ + K G +A+ + +M+++ P+ + L+ L
Sbjct: 507 NMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTL 548
Score = 37.4 bits (85), Expect = 5.8, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR-KEDLFPDSQTYTEVIRGFLKDGS 192
K+ PD Y +I L ++ ++ EA+ ++ M+ + PD TY +I G
Sbjct: 988 KESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGM 1047
Query: 193 PADAMNIYEDMIKSPDPPEELPFRILLKG 221
+A IY ++ ++ P F L++G
Sbjct: 1048 VEEAGKIYNEIQRAGLEPNVFTFNALIRG 1076
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195
D +PD + Y L+ + R G ++EA+++ M E + P+ TYT ++ GF G +
Sbjct: 217 DGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 276
Query: 196 AMNIYEDMIKSPDPPEELPFRILLKGLL 223
A + + M + P E +R L+ G+
Sbjct: 277 AFRMLDKMKEKGVAPSEATYRTLVHGVF 304
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 136 DW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194
+W +P+A Y L+ L G +N+A+ + M+ + + PD+ ++ +I F +
Sbjct: 531 EWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVD 590
Query: 195 DAMNIYEDMIKSPDPPEELPFRILLKGLL 223
A +I+ DM++ P+ + L+K L
Sbjct: 591 KAEDIFNDMVRFGVVPDSYTYNSLIKALC 619
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 127 KIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
K D++ K D PDAY + LI++ R K+++A ++ M + + PDS TY +I
Sbjct: 556 KAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLI 615
Query: 185 RGFLKD 190
+ +
Sbjct: 616 KALCDE 621
>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 701
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A ++F + + D Y+P+ + Y +I + K+N A ++ M+++ LFP+ TYT +I
Sbjct: 341 AFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLI 400
Query: 185 RGFLKDGSPADA---MNIYED 202
G K GS A MN+ D
Sbjct: 401 NGHCKAGSFGRAYELMNLMGD 421
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+LI+ + ++ I F + ++ D + LI A R KM E+ ++++ +
Sbjct: 467 TILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVS 526
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230
L P +TYT +I + K+G A+ + +M + P+ + L+ GL ++
Sbjct: 527 LGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDE 586
Query: 231 KVK 233
K
Sbjct: 587 ACK 589
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P Y +I + G ++ A++ + +M++ PDS TY +I G K +A +
Sbjct: 531 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 590
Query: 200 YEDMI-KSPDPPE 211
YE MI + PPE
Sbjct: 591 YEAMIDRGLSPPE 603
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+ YK ++I R GK+ EA + M + PD+ T T ++ ++G A+
Sbjct: 215 PDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWY 274
Query: 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239
+ MI P + F L+ GL + +K+ FE L
Sbjct: 275 FRKMIDLGFKPNLINFTSLIDGLCK----KGSIKQAFEML 310
Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
LA+K F +++ PD++ Y LI L + ++EA +++E+M L P T +
Sbjct: 551 LALKYFHNMKRHGCV-PDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTL 609
Query: 184 IRGFLKDGSPADAMNIYE 201
+ K A+AM + E
Sbjct: 610 AYEYCKRNDSANAMILLE 627
>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 999
Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P+ + Y I L +TG ++EA++V + M ++ L PD TYT ++ GF K +A
Sbjct: 273 KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKL 332
Query: 199 IYEDMIKSPDPPEELPFRILLKGLL 223
I+E M S P + L+ G +
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFI 357
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y L+ + + EA ++ESM L P+ TYT +I GF+K+G+ +A+ I
Sbjct: 309 PDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRI 368
Query: 200 YEDMI 204
++MI
Sbjct: 369 KDEMI 373
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LII L R K+ EA + M ++ + P++ TY I + K G A
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
++DM+ S P + + IL+KG
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKG 600
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD Y +I +L++ GK EAM V+ K + PD Y +I GF K+G A +
Sbjct: 624 PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQL 683
Query: 200 YEDMIKSPDPPEELPFRILL 219
Y++M+ + P + + L+
Sbjct: 684 YDEMLHNGINPNIVVYNTLI 703
Score = 45.4 bits (106), Expect = 0.023, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR--GFLKDGSPADAM 197
PD ++Y LI + G + +A Q+++ M + P+ Y +I G+ K G+ +A
Sbjct: 659 PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAF 718
Query: 198 NIYEDMIKSPDPPEELPFRILLKG 221
++++MI P+ + IL+ G
Sbjct: 719 KLFDEMISKGISPDGYIYCILIDG 742
Score = 45.1 bits (105), Expect = 0.027, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ + Y LI + G + EA+++ + M L + TY +I G K G A AM++
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
+ +M+ + P+ + +L+ G L
Sbjct: 404 FNEMLMAGIEPDTWTYNLLIDGYL 427
Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y +I +A+ G+M +AM ++ M + PD+ TY +I G+LK A A + +M
Sbjct: 384 YNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMK 443
Query: 205 KSPDPPEELPFRILLKGL 222
P + +L+ GL
Sbjct: 444 ARKLTPSPFTYSVLISGL 461
Score = 43.5 bits (101), Expect = 0.087, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
P+ IY LI G EA+ ++ M ++ L PD + Y+ +I K+G +AM +
Sbjct: 589 PNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGV 648
Query: 200 YEDMIKSPDPPEELPFRILLKGL 222
+ +K+ P+ + L+ G
Sbjct: 649 FLKFLKTGVVPDVFLYNSLISGF 671
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 125 AVKIFD-IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV 183
A K+FD +I K PD YIY LI + G + +A+ ++ +++ + S + +
Sbjct: 717 AFKLFDEMISKG--ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLS-AFNSL 773
Query: 184 IRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
I F K G +A +++DM+ P + + IL+ ++++ ++ E+LF
Sbjct: 774 IDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDA-----YGKAEMMEEAEQLF 825
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 108 DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167
+ +AVL E + +E ++ + KQ+ D YK +I +L R G A Q+
Sbjct: 381 NAIAVLCEEGKVQEAFSIIQ--SLGNKQNSSTHD--FYKGVISSLCRKGNTYPAFQLLYE 436
Query: 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
M K PDS TY+ +IRG +G +AM I+ M ++ P+ F L+ GL
Sbjct: 437 MTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGLC 492
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 1/112 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ L R+ T A ++ + K + PD+Y Y LI L G ++EAM+++ M +
Sbjct: 416 GVISSLCRKGNTYPAFQLLYEMTKYGFV-PDSYTYSSLIRGLCSEGMLDEAMEIFSIMEE 474
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222
PD + +I G K ++ ++E M+K P E + I+++G+
Sbjct: 475 NYCRPDVDNFNALILGLCKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGI 526
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
++PD L+ L ++ KM +A +V E M PD + T ++ K G+ AM
Sbjct: 93 HKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGTTPDPASCTFLVNNLCKRGNVGYAM 152
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233
+ E M + P + + L++GL H L ++
Sbjct: 153 QLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSLQ 188
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/86 (20%), Positives = 43/86 (50%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
Y + Y L+ L G +++++Q+ + K+ L P+ TY+ ++ K+ +A+
Sbjct: 163 YPTNTVTYNSLVRGLCMHGNLSQSLQILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAI 222
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL 223
+ ++++ P + + +LL GL
Sbjct: 223 RLLDEIVAKGGKPNLVSYNVLLTGLC 248
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
V+ +L + T A ++FD +R++ + Y LI L R K+NEA +V + M+
Sbjct: 273 CVMNQLCKDGRTKDAFQVFDEMRERG-VSCNIVTYNTLIGGLCREMKLNEANKVVDQMKS 331
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ + P+ TY +I GF G A+++ D+ P + + IL+ G
Sbjct: 332 DGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFC 384
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P Y LI AR+ M +A+Q+ SM + L PD TY+ +I GF G +A
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASR 464
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+++ M++ P E+ + ++ G
Sbjct: 465 LFKSMVEKNCEPNEVIYNTMILG 487
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 46/84 (54%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI G+MNEA ++++SM +++ P+ Y +I G+ K+GS A+ +
Sbjct: 441 PDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKL 500
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++M + P +R +++ L
Sbjct: 501 LKEMEEKELAPNVASYRYMIEVLC 524
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%)
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y LI L + G + +++E M+++ +FP+ TY V+ KDG DA ++++M
Sbjct: 236 YTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMR 295
Query: 205 KSPDPPEELPFRILLKGLL 223
+ + + L+ GL
Sbjct: 296 ERGVSCNIVTYNTLIGGLC 314
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A K+ D + K D P+ Y LI GK+ +A+ + ++ L P TY ++
Sbjct: 322 ANKVVDQM-KSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILV 380
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
GF + G + A + ++M + P ++ + IL+
Sbjct: 381 SGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P+ IY LI + G++ +A ++ M K L + +TYT +I G K+G
Sbjct: 194 FSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGF 253
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
+YE M + P + ++ + L + KD ++F E
Sbjct: 254 EMYEKMQEDGVFPNLYTYNCVM-----NQLCKDGRTKDAFQVFDE 293
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
++D P+ Y Y ++ L + G+ +A QV++ MR+ + + TY +I G ++
Sbjct: 260 QEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKL 319
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A + + M P + + L+ G
Sbjct: 320 NEANKVVDQMKSDGINPNLITYNTLIDGFC 349
>gi|302143554|emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P A +Y LI + + GK+ A+++W+ M+K P+ YT V+ K G AM+
Sbjct: 299 RPSATMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETAMS 358
Query: 199 IYEDMIKSPDPPEELPFRILLK 220
++ DM K+ P + LL+
Sbjct: 359 VFSDMEKAGFLPTPSTYSCLLE 380
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
A++I+D ++K ++P+ +Y ++ + A++GK+ AM V+ M K P TY+ ++
Sbjct: 321 ALRIWDEMKKAG-FRPNYGLYTMVVESHAKSGKLETAMSVFSDMEKAGFLPTPSTYSCLL 379
Query: 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219
G AM +Y M + P + LL
Sbjct: 380 EMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALL 414
>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 647
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD+Y Y LI ALA+ GK++EA+ + + M + TYT +I G ++ +A+ +
Sbjct: 457 PDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTL 516
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ MI P FR L GL
Sbjct: 517 WDLMIDKGITPTAAAFRALSTGLC 540
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 48/89 (53%)
Query: 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
K++ +PD Y ++ +L ++G+++EA++ E + + ++ Y+ +I G K G
Sbjct: 381 KKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRV 440
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGL 222
+A I+ +M+K PP+ + L+ L
Sbjct: 441 DEAERIFYEMVKKGCPPDSYCYNALIDAL 469
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+ + IY LI + A+ G M EAM +++ M+KE L PD TY ++ K G +A+
Sbjct: 351 KANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALE 410
Query: 199 IYE 201
E
Sbjct: 411 YME 413
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200
D ++ +I A + G M+E M ++ M+++ + PD+ TY VI F + G ADAM+ +
Sbjct: 401 DQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKF 460
Query: 201 EDMIKSPDPPEELPFRILLKGLLPH 225
MI PE + + L++G H
Sbjct: 461 NQMIAMGLKPEGIVYHSLIQGFCMH 485
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170
+++ L ++ + A IFD + +PD + LI GK+ +A V ++M
Sbjct: 513 SIINSLCKEGRVVEAHDIFDFVIHIG-ERPDVITFNSLIDGYGLVGKIEKAFGVLDAMIS 571
Query: 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+ PD +Y +I G+ ++G D + ++ +M+ P + + I+L GL
Sbjct: 572 AGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLF 624
Score = 42.7 bits (99), Expect = 0.15, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203
I +I A+ + K EA ++++S+ L P++ TY +I+ LK+GS +A N++ M
Sbjct: 685 IINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLM 744
Query: 204 IKSPDPPEELPFRILLKGLL 223
KS P +++ LL
Sbjct: 745 EKSGCAPSSRLLNYIIRVLL 764
Score = 41.2 bits (95), Expect = 0.37, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 109 IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESM 168
+V L E R + + + +++K P+ Y +I L R G++++A ++ M
Sbjct: 196 VVKTLCEDSRSQRALDLLHT--MVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEM 253
Query: 169 RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
++ + PD TYT +I K + A + MI + P ++ + ++ G
Sbjct: 254 MQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHG 306
Score = 41.2 bits (95), Expect = 0.47, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179
+ET+L IF +++Q PDA Y +I A +R G++ +AM + M L P+
Sbjct: 419 DETML---IFTQMQEQG-VIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIV 474
Query: 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215
Y +I+GF G+ A + +M+ P + F
Sbjct: 475 YHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVF 510
Score = 39.3 bits (90), Expect = 1.6, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD Y LI R G++++ + ++ M + + P + TY ++ G DG A
Sbjct: 575 EPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKK 634
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +MI+S + I+L GL
Sbjct: 635 MCHEMIESGTTMDISTCGIILGGL 658
Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 95 KFIKTHVLRLLKMDIVAVLIELE-----RQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149
+F+KT LKMD++ I L+ ++ + ++ + + + + +PD Y ++
Sbjct: 144 RFLKTG----LKMDVIVASILLKCLYHAKRSDDVVNLLLHRM--PELGVEPDTISYNTVV 197
Query: 150 IALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207
L + A+ + +M K+ P+ TY VI G ++G + A N++ +M++
Sbjct: 198 KTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQG 257
Query: 208 DPPEELPFRILLKGL 222
P+ + + ++ L
Sbjct: 258 VVPDVVTYTSIIDAL 272
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 116 LERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL 173
L+R V+ + +RK ++PD Y +I + G + +A +V + +
Sbjct: 267 LDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGF 326
Query: 174 FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228
PD TY +I GF KDG P AM +++D + P + + L+KGL L+
Sbjct: 327 KPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLI 381
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+P +Y LI L++ G + A+Q+ M + P+ TY VI G K G +DA +
Sbjct: 362 RPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASH 421
Query: 199 IYEDMIKSPDPPEELPFRILLKG 221
+ +D I PP+ + L+ G
Sbjct: 422 LVDDAIAKGCPPDIFTYNTLIDG 444
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + Y LI + K++ A ++ M + + PD TY ++ G K G + M I
Sbjct: 433 PDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEI 492
Query: 200 YEDMIKSPDPPEELPFRILLKGLL 223
++ M + P + + I++ L
Sbjct: 493 FKAMEEKGCTPNIITYNIIVDSLC 516
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 137 WYQ---PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193
W Q PD Y L+ L + GK E M+++++M ++ P+ TY ++ K
Sbjct: 462 WSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKV 521
Query: 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLL 223
+A+++ +M P+ + F L G
Sbjct: 522 NEAVDLLGEMKSKGLKPDVVSFGTLFTGFC 551
>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
Length = 800
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ PD + LI L GK++EA+ V E M + +FPD Y +I G K A
Sbjct: 620 HTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAK 679
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELF 240
NI E+M++ P+E + L+ G +RS+ D ++F
Sbjct: 680 NILEEMLEKNVQPDEFVYATLIDG-----FIRSENLGDARKIF 717
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
Query: 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197
+ P Y LI L + G + + ++ MRK L P+ Q Y VI K S AM
Sbjct: 480 FLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 539
Query: 198 NIYEDMIKSPDPPEELPFRILLKGLL-------PHPLLRSKVKKDFEELFPEKHAYDP 248
I + M S P+ + F L+ GL LR +++ EL P + +Y P
Sbjct: 540 VILKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRR---ELNPNQLSYTP 594
Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD IY LI L + + A + E M ++++ PD Y +I GF++ + DA I
Sbjct: 657 PDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKI 716
Query: 200 YEDMIKSPDPPEELPFRILLKG 221
+E M P+ + ++KG
Sbjct: 717 FEFMEHKGVRPDIVSCNAMIKG 738
Score = 40.4 bits (93), Expect = 0.70, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 8/114 (7%)
Query: 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199
PD + LI L G + +A + +L P+ +YT +I GF G A ++
Sbjct: 552 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 611
Query: 200 YEDMIKSPDPPEELPFRILLKGLL------PHPLLRSKVKKDFEELFPEKHAYD 247
+M+ P+ + F L+ GL+ ++R K+ + ++FP+ + Y+
Sbjct: 612 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTE--RQVFPDVNIYN 663
Score = 38.9 bits (89), Expect = 2.3, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 37/67 (55%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
QPD ++Y LI R+ + +A +++E M + + PD + +I+G+ + G ++A+
Sbjct: 691 QPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAIL 750
Query: 199 IYEDMIK 205
+M K
Sbjct: 751 CMSNMRK 757
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%)
Query: 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189
++I+ +PD + +I L + G+M +A+ V E M + + TY +I GFL+
Sbjct: 315 EMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLR 374
Query: 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221
AMN+ ++I S P+ + IL+ G
Sbjct: 375 VHKVNMAMNLMSELISSGLEPDSFTYSILING 406
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184
AVK+ DI+ Q +P+ Y LI L + G + EA+ + M + + PD TY +I
Sbjct: 239 AVKVKDIM-VQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLI 297
Query: 185 RGFLKDGSPADAMNIYEDMIKSPD--PPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE 242
G AM + E+MI+ P+ + F ++ GL +R + E+ E
Sbjct: 298 AGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQAIS--VREMMAE 355
Query: 243 KHA 245
+
Sbjct: 356 RGC 358
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 12/164 (7%)
Query: 91 EKLQKFIKTHVLRLLKMDI------VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYI 144
++ + F++T R ++ ++ +A L +L E+ ++ D+ DA
Sbjct: 414 DRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMDM-----NCGLDAVA 468
Query: 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204
Y ++ ++G + A Q+ + M E L PD+ TY+ +I F K G +A + + M
Sbjct: 469 YSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINMFAKLGDLEEAERVLKQMA 528
Query: 205 KSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDP 248
S P+ F L+KG + +K+ E+ + A DP
Sbjct: 529 ASGFVPDVAVFDSLIKGYSAEGQI-NKILDLIHEMRAKNVAIDP 571
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198
+PD ++ I L + G++ +A++V + M + L P+ TY +I K+GS +A+
Sbjct: 217 EPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALA 276
Query: 199 IYEDMIKSPDPPEELPFRILLKGL 222
+ +M P+ + + L+ GL
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAGL 300
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.141 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,285,090,191
Number of Sequences: 23463169
Number of extensions: 188799641
Number of successful extensions: 431138
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4043
Number of HSP's successfully gapped in prelim test: 858
Number of HSP's that attempted gapping in prelim test: 399537
Number of HSP's gapped (non-prelim): 30733
length of query: 256
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 117
effective length of database: 9,097,814,876
effective search space: 1064444340492
effective search space used: 1064444340492
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)