Query 025226
Match_columns 256
No_of_seqs 179 out of 2686
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025226.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025226hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-41 5.5E-46 313.9 17.6 245 3-254 479-765 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 9.1E-41 2E-45 310.2 17.5 238 2-254 443-695 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 4.1E-40 8.8E-45 300.6 14.4 243 2-255 164-474 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.4E-38 5.2E-43 289.0 14.0 235 2-255 265-506 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 2.6E-37 5.6E-42 288.1 15.3 246 3-255 229-637 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 6.7E-37 1.5E-41 285.3 16.7 242 3-255 128-436 (857)
7 PF13041 PPR_2: PPR repeat fam 99.7 3.1E-17 6.7E-22 98.3 6.4 50 175-224 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.7 4.8E-17 1E-21 97.4 6.4 50 140-189 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.6 1.1E-13 2.3E-18 118.7 16.0 135 113-251 187-323 (389)
10 PRK11788 tetratricopeptide rep 99.5 3.2E-13 7E-18 115.7 15.7 223 5-244 116-354 (389)
11 TIGR02917 PEP_TPR_lipo putativ 99.4 5.4E-11 1.2E-15 111.5 18.0 117 112-233 641-757 (899)
12 KOG4422 Uncharacterized conser 99.3 2.5E-11 5.4E-16 100.6 12.8 115 111-230 212-330 (625)
13 TIGR02917 PEP_TPR_lipo putativ 99.3 7E-11 1.5E-15 110.7 17.2 207 5-233 576-791 (899)
14 PF12854 PPR_1: PPR repeat 99.3 2.2E-12 4.8E-17 70.0 3.9 32 172-203 2-33 (34)
15 KOG4422 Uncharacterized conser 99.3 8.5E-11 1.9E-15 97.5 13.2 169 82-255 124-324 (625)
16 PF12854 PPR_1: PPR repeat 99.2 1.6E-11 3.4E-16 66.6 4.2 33 136-169 2-34 (34)
17 PF13429 TPR_15: Tetratricopep 99.0 2.2E-09 4.8E-14 88.0 8.7 210 5-233 17-235 (280)
18 TIGR00756 PPR pentatricopeptid 98.9 2.4E-09 5.1E-14 58.5 4.2 33 179-211 2-34 (35)
19 KOG4318 Bicoid mRNA stability 98.9 6.5E-08 1.4E-12 86.9 14.9 203 17-230 11-289 (1088)
20 PRK15174 Vi polysaccharide exp 98.9 3.5E-07 7.6E-12 83.6 19.1 115 116-233 187-305 (656)
21 PRK15174 Vi polysaccharide exp 98.9 2.7E-07 5.8E-12 84.4 18.1 146 82-233 186-339 (656)
22 TIGR00756 PPR pentatricopeptid 98.8 6.5E-09 1.4E-13 56.7 3.9 35 143-177 1-35 (35)
23 PF13812 PPR_3: Pentatricopept 98.8 8.8E-09 1.9E-13 55.9 4.0 33 178-210 2-34 (34)
24 PF13429 TPR_15: Tetratricopep 98.7 1.9E-07 4.2E-12 76.6 12.1 205 8-233 56-269 (280)
25 PF13812 PPR_3: Pentatricopept 98.7 2.5E-08 5.5E-13 54.0 4.1 34 142-175 1-34 (34)
26 TIGR02521 type_IV_pilW type IV 98.7 2.8E-06 6.1E-11 66.6 16.4 152 76-233 34-190 (234)
27 TIGR00990 3a0801s09 mitochondr 98.7 1.7E-06 3.7E-11 78.8 16.9 206 8-233 343-563 (615)
28 TIGR02521 type_IV_pilW type IV 98.7 9E-06 2E-10 63.7 19.1 154 77-233 69-224 (234)
29 PF08579 RPM2: Mitochondrial r 98.6 6.2E-07 1.3E-11 61.5 10.1 76 149-224 32-116 (120)
30 PF01535 PPR: PPR repeat; Int 98.6 3.4E-08 7.4E-13 52.3 3.2 29 179-207 2-30 (31)
31 TIGR00990 3a0801s09 mitochondr 98.6 5.3E-06 1.2E-10 75.6 17.5 226 10-253 308-552 (615)
32 PF01535 PPR: PPR repeat; Int 98.5 8E-08 1.7E-12 50.8 3.1 31 143-173 1-31 (31)
33 PF08579 RPM2: Mitochondrial r 98.5 1.1E-06 2.4E-11 60.2 9.3 79 111-190 30-117 (120)
34 PF10037 MRP-S27: Mitochondria 98.4 1.9E-06 4E-11 73.7 9.8 115 111-225 71-186 (429)
35 PRK11447 cellulose synthase su 98.4 2.6E-05 5.6E-10 76.1 17.3 148 78-233 578-732 (1157)
36 KOG4626 O-linked N-acetylgluco 98.3 6.8E-05 1.5E-09 65.9 15.8 217 6-243 262-489 (966)
37 PRK10747 putative protoheme IX 98.3 7.7E-05 1.7E-09 64.4 16.1 225 9-253 97-371 (398)
38 PRK09782 bacteriophage N4 rece 98.2 0.00015 3.3E-09 68.9 18.9 201 10-234 490-699 (987)
39 KOG2003 TPR repeat-containing 98.2 4.3E-05 9.4E-10 64.7 13.0 197 8-227 502-709 (840)
40 PRK12370 invasion protein regu 98.2 0.00018 3.9E-09 64.9 18.0 140 87-234 318-463 (553)
41 PRK10747 putative protoheme IX 98.2 3.4E-05 7.4E-10 66.6 12.3 216 5-238 162-387 (398)
42 COG2956 Predicted N-acetylgluc 98.2 8.6E-05 1.9E-09 60.3 13.1 212 9-233 48-270 (389)
43 PRK09782 bacteriophage N4 rece 98.1 0.0004 8.8E-09 66.2 19.1 145 84-234 520-665 (987)
44 PRK11447 cellulose synthase su 98.1 0.00012 2.5E-09 71.6 16.0 204 6-233 471-692 (1157)
45 PF06239 ECSIT: Evolutionarily 98.1 4.8E-05 1E-09 58.6 10.3 81 111-192 52-153 (228)
46 PRK12370 invasion protein regu 98.1 0.00047 1E-08 62.2 18.1 161 50-227 324-490 (553)
47 TIGR00540 hemY_coli hemY prote 98.1 9.4E-05 2E-09 64.1 13.0 123 111-238 268-396 (409)
48 KOG4626 O-linked N-acetylgluco 98.1 0.0001 2.2E-09 64.8 12.7 156 78-242 257-420 (966)
49 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00025 5.3E-09 60.6 14.8 115 111-233 174-289 (395)
50 KOG4318 Bicoid mRNA stability 98.1 3.9E-06 8.4E-11 75.9 4.1 90 128-230 12-101 (1088)
51 COG3071 HemY Uncharacterized e 98.1 0.00015 3.3E-09 60.3 13.0 184 2-205 193-389 (400)
52 PF10037 MRP-S27: Mitochondria 98.0 7.1E-05 1.5E-09 64.2 10.4 110 138-247 62-177 (429)
53 COG3071 HemY Uncharacterized e 97.9 0.00066 1.4E-08 56.6 14.7 149 80-233 194-382 (400)
54 PF06239 ECSIT: Evolutionarily 97.9 8.2E-05 1.8E-09 57.4 8.8 89 140-228 45-154 (228)
55 PRK11189 lipoprotein NlpI; Pro 97.9 0.0023 4.9E-08 53.0 18.1 120 81-204 72-192 (296)
56 PRK10049 pgaA outer membrane p 97.9 0.0016 3.5E-08 61.1 18.8 160 82-243 246-426 (765)
57 TIGR00540 hemY_coli hemY prote 97.9 0.0012 2.5E-08 57.3 16.4 158 78-238 123-289 (409)
58 COG2956 Predicted N-acetylgluc 97.9 0.00057 1.2E-08 55.7 13.0 185 5-206 78-278 (389)
59 TIGR02552 LcrH_SycD type III s 97.9 0.00098 2.1E-08 48.0 13.2 102 111-217 22-123 (135)
60 PF04733 Coatomer_E: Coatomer 97.8 0.00024 5.3E-09 58.4 10.7 136 82-228 111-251 (290)
61 PRK14574 hmsH outer membrane p 97.8 0.0028 6E-08 59.5 18.4 162 79-242 298-482 (822)
62 TIGR03302 OM_YfiO outer membra 97.8 0.0041 9E-08 49.4 17.2 157 75-233 35-224 (235)
63 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.0025 5.5E-08 54.5 16.6 120 78-204 174-295 (395)
64 PRK14574 hmsH outer membrane p 97.8 0.0027 5.8E-08 59.6 17.9 155 83-243 44-202 (822)
65 PRK15359 type III secretion sy 97.8 0.0021 4.5E-08 47.2 13.8 100 111-215 29-128 (144)
66 PF04733 Coatomer_E: Coatomer 97.8 0.00032 7E-09 57.7 10.4 125 116-251 112-240 (290)
67 KOG1126 DNA-binding cell divis 97.8 0.00034 7.3E-09 61.8 10.7 206 15-242 410-623 (638)
68 PRK10049 pgaA outer membrane p 97.7 0.0043 9.3E-08 58.2 18.7 148 80-233 22-171 (765)
69 cd00189 TPR Tetratricopeptide 97.7 0.0011 2.4E-08 43.3 10.9 92 112-206 6-97 (100)
70 PF12569 NARP1: NMDA receptor- 97.7 0.0024 5.2E-08 56.7 14.7 215 5-233 47-283 (517)
71 TIGR02552 LcrH_SycD type III s 97.6 0.0021 4.5E-08 46.3 12.0 115 128-246 5-121 (135)
72 PRK10370 formate-dependent nit 97.6 0.0087 1.9E-07 46.4 15.9 110 119-233 52-165 (198)
73 PRK11189 lipoprotein NlpI; Pro 97.6 0.017 3.7E-07 47.8 18.4 142 87-234 40-187 (296)
74 KOG3081 Vesicle coat complex C 97.6 0.0079 1.7E-07 48.0 14.6 113 113-231 144-260 (299)
75 PF12921 ATP13: Mitochondrial 97.5 0.0019 4.2E-08 46.1 10.1 84 141-224 1-100 (126)
76 PRK10370 formate-dependent nit 97.5 0.0072 1.6E-07 46.9 14.0 104 112-221 79-186 (198)
77 KOG2003 TPR repeat-containing 97.5 0.0071 1.5E-07 51.7 14.6 165 82-254 533-705 (840)
78 PF05843 Suf: Suppressor of fo 97.5 0.0014 3.1E-08 53.7 10.5 142 75-223 3-151 (280)
79 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0075 1.6E-07 42.0 13.0 96 111-206 7-105 (119)
80 COG5010 TadD Flp pilus assembl 97.5 0.017 3.7E-07 45.9 15.6 121 112-236 106-226 (257)
81 KOG1155 Anaphase-promoting com 97.5 0.0051 1.1E-07 52.6 13.3 147 81-233 338-487 (559)
82 PF05843 Suf: Suppressor of fo 97.5 0.004 8.7E-08 51.1 12.7 137 111-250 6-147 (280)
83 PRK15359 type III secretion sy 97.4 0.0047 1E-07 45.3 11.3 102 144-247 26-129 (144)
84 PF14559 TPR_19: Tetratricopep 97.4 0.0013 2.9E-08 41.2 7.1 64 117-184 2-65 (68)
85 COG4783 Putative Zn-dependent 97.4 0.0085 1.8E-07 51.5 13.6 115 114-233 314-429 (484)
86 PLN03088 SGT1, suppressor of 97.3 0.0097 2.1E-07 50.6 14.0 99 115-219 11-110 (356)
87 PRK15179 Vi polysaccharide bio 97.3 0.031 6.6E-07 51.7 17.9 117 112-233 92-209 (694)
88 PF12895 Apc3: Anaphase-promot 97.3 0.00062 1.4E-08 44.9 5.1 81 119-202 2-83 (84)
89 KOG1840 Kinesin light chain [C 97.3 0.0088 1.9E-07 52.8 13.2 221 5-233 208-471 (508)
90 COG3063 PilF Tfp pilus assembl 97.3 0.059 1.3E-06 42.2 16.3 154 74-233 36-194 (250)
91 PF09976 TPR_21: Tetratricopep 97.2 0.017 3.6E-07 42.4 12.7 111 119-233 24-139 (145)
92 KOG1129 TPR repeat-containing 97.1 0.0088 1.9E-07 49.2 10.8 149 80-233 230-379 (478)
93 cd00189 TPR Tetratricopeptide 97.1 0.0086 1.9E-07 38.9 9.5 90 144-235 2-91 (100)
94 KOG3081 Vesicle coat complex C 97.1 0.031 6.7E-07 44.7 13.5 155 86-251 85-246 (299)
95 PF03704 BTAD: Bacterial trans 97.1 0.004 8.6E-08 45.7 8.0 70 145-215 65-139 (146)
96 KOG1155 Anaphase-promoting com 97.1 0.015 3.3E-07 49.9 12.1 205 11-233 242-453 (559)
97 cd05804 StaR_like StaR_like; a 97.0 0.14 3.1E-06 43.1 18.3 155 82-243 52-217 (355)
98 PF09976 TPR_21: Tetratricopep 97.0 0.06 1.3E-06 39.4 13.7 120 77-202 16-143 (145)
99 KOG2076 RNA polymerase III tra 97.0 0.025 5.5E-07 52.1 13.5 171 80-251 248-488 (895)
100 PRK15179 Vi polysaccharide bio 97.0 0.095 2.1E-06 48.5 17.5 120 80-206 93-217 (694)
101 cd05804 StaR_like StaR_like; a 97.0 0.069 1.5E-06 45.1 15.8 91 114-206 122-215 (355)
102 PF04840 Vps16_C: Vps16, C-ter 97.0 0.019 4.2E-07 47.9 12.0 102 111-233 182-283 (319)
103 KOG1840 Kinesin light chain [C 97.0 0.065 1.4E-06 47.5 15.6 159 75-234 201-389 (508)
104 KOG1173 Anaphase-promoting com 97.0 0.07 1.5E-06 47.0 15.3 167 73-243 346-522 (611)
105 KOG0547 Translocase of outer m 96.9 0.02 4.3E-07 49.5 11.8 144 86-236 407-561 (606)
106 KOG2002 TPR-containing nuclear 96.9 0.012 2.5E-07 54.7 10.7 111 120-233 626-737 (1018)
107 PF03704 BTAD: Bacterial trans 96.9 0.0073 1.6E-07 44.2 8.1 67 111-179 67-138 (146)
108 TIGR03302 OM_YfiO outer membra 96.9 0.13 2.8E-06 40.7 15.7 128 76-206 73-232 (235)
109 TIGR02795 tol_pal_ybgF tol-pal 96.9 0.032 7E-07 38.7 11.0 88 144-233 4-97 (119)
110 KOG1126 DNA-binding cell divis 96.8 0.058 1.3E-06 48.2 14.0 187 5-212 430-626 (638)
111 KOG1914 mRNA cleavage and poly 96.8 0.17 3.7E-06 44.5 16.2 125 104-233 362-493 (656)
112 PF14559 TPR_19: Tetratricopep 96.8 0.0061 1.3E-07 38.1 6.0 63 153-219 2-65 (68)
113 PRK02603 photosystem I assembl 96.8 0.1 2.2E-06 39.4 13.6 109 112-227 41-166 (172)
114 PF12688 TPR_5: Tetratrico pep 96.7 0.11 2.4E-06 36.7 12.9 101 81-189 9-118 (120)
115 KOG3941 Intermediate in Toll s 96.7 0.018 3.9E-07 46.5 8.9 34 120-154 86-119 (406)
116 PF13432 TPR_16: Tetratricopep 96.7 0.013 2.8E-07 36.3 6.8 55 114-170 5-59 (65)
117 COG4783 Putative Zn-dependent 96.6 0.11 2.3E-06 45.0 13.9 116 83-205 316-436 (484)
118 PF12895 Apc3: Anaphase-promot 96.6 0.0015 3.3E-08 43.0 2.4 78 155-234 2-80 (84)
119 KOG2076 RNA polymerase III tra 96.6 0.12 2.6E-06 47.9 14.9 176 39-233 153-337 (895)
120 PF12688 TPR_5: Tetratrico pep 96.6 0.035 7.6E-07 39.3 9.2 54 116-170 11-66 (120)
121 PF13170 DUF4003: Protein of u 96.6 0.075 1.6E-06 43.9 12.5 129 88-218 73-223 (297)
122 CHL00033 ycf3 photosystem I as 96.6 0.076 1.7E-06 39.8 11.8 89 112-203 41-139 (168)
123 KOG3785 Uncharacterized conser 96.6 0.047 1E-06 45.5 11.0 132 111-247 364-498 (557)
124 KOG1129 TPR repeat-containing 96.6 0.085 1.8E-06 43.6 12.3 125 74-204 257-385 (478)
125 PF12921 ATP13: Mitochondrial 96.5 0.045 9.8E-07 39.1 9.5 55 138-192 48-103 (126)
126 PLN03088 SGT1, suppressor of 96.5 0.097 2.1E-06 44.6 13.1 103 80-187 9-113 (356)
127 PRK02603 photosystem I assembl 96.4 0.081 1.7E-06 39.9 11.1 86 141-227 34-121 (172)
128 COG3063 PilF Tfp pilus assembl 96.4 0.33 7.2E-06 38.2 17.1 167 75-247 71-244 (250)
129 KOG3941 Intermediate in Toll s 96.4 0.025 5.4E-07 45.7 8.2 83 118-204 103-186 (406)
130 KOG1125 TPR repeat-containing 96.3 0.047 1E-06 48.1 10.2 112 119-233 407-519 (579)
131 PRK15363 pathogenicity island 96.3 0.14 3E-06 37.9 11.1 93 111-206 40-132 (157)
132 PF12569 NARP1: NMDA receptor- 96.3 0.17 3.8E-06 45.1 13.9 123 77-204 198-332 (517)
133 PF13432 TPR_16: Tetratricopep 96.2 0.035 7.7E-07 34.3 6.7 56 149-206 4-60 (65)
134 KOG1070 rRNA processing protei 96.1 0.48 1E-05 46.4 16.3 115 111-230 1535-1652(1710)
135 PF13371 TPR_9: Tetratricopept 96.1 0.073 1.6E-06 33.6 8.0 56 114-171 3-58 (73)
136 PRK10153 DNA-binding transcrip 96.1 0.19 4.1E-06 45.0 13.0 132 112-247 343-490 (517)
137 COG5010 TadD Flp pilus assembl 96.0 0.41 8.9E-06 38.2 13.0 123 79-206 106-231 (257)
138 CHL00033 ycf3 photosystem I as 95.9 0.18 3.8E-06 37.9 10.6 92 141-233 34-134 (168)
139 KOG2053 Mitochondrial inherita 95.9 0.18 3.8E-06 46.9 11.8 111 80-195 16-128 (932)
140 KOG1070 rRNA processing protei 95.8 0.19 4.1E-06 49.0 12.2 148 75-227 1532-1686(1710)
141 COG3629 DnrI DNA-binding trans 95.8 0.18 3.8E-06 41.1 10.6 82 143-225 154-240 (280)
142 KOG2002 TPR-containing nuclear 95.8 0.048 1E-06 50.8 8.0 107 112-220 652-759 (1018)
143 KOG3616 Selective LIM binding 95.7 0.11 2.4E-06 47.4 9.8 108 112-233 738-845 (1636)
144 PRK14720 transcript cleavage f 95.6 0.68 1.5E-05 44.0 14.9 129 73-206 31-178 (906)
145 KOG0985 Vesicle coat protein c 95.5 0.31 6.7E-06 46.2 12.0 107 74-198 1134-1241(1666)
146 KOG1915 Cell cycle control pro 95.5 0.52 1.1E-05 41.1 12.6 89 112-205 147-235 (677)
147 PF13424 TPR_12: Tetratricopep 95.3 0.042 9E-07 35.3 4.6 61 143-203 6-72 (78)
148 KOG0547 Translocase of outer m 95.3 0.96 2.1E-05 39.6 13.6 126 112-242 366-494 (606)
149 KOG0553 TPR repeat-containing 95.3 0.42 9.1E-06 39.0 10.8 100 115-220 90-190 (304)
150 PF13414 TPR_11: TPR repeat; P 95.0 0.17 3.6E-06 31.5 6.6 61 142-204 3-65 (69)
151 PRK10803 tol-pal system protei 95.0 0.66 1.4E-05 37.7 11.6 85 117-206 154-246 (263)
152 KOG4340 Uncharacterized conser 95.0 0.56 1.2E-05 38.5 10.8 151 84-237 155-335 (459)
153 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.29 6.4E-06 42.4 9.8 58 111-171 80-141 (453)
154 KOG1173 Anaphase-promoting com 95.0 0.71 1.5E-05 40.9 12.1 143 77-225 384-535 (611)
155 PF13414 TPR_11: TPR repeat; P 94.8 0.16 3.5E-06 31.6 6.2 56 113-170 10-66 (69)
156 smart00299 CLH Clathrin heavy 94.8 0.91 2E-05 32.8 10.9 85 110-203 11-95 (140)
157 KOG1128 Uncharacterized conser 94.6 0.13 2.8E-06 46.7 7.1 118 86-206 498-616 (777)
158 COG5107 RNA14 Pre-mRNA 3'-end 94.6 0.47 1E-05 41.0 9.8 115 112-231 403-521 (660)
159 KOG3616 Selective LIM binding 94.5 0.32 7E-06 44.6 9.2 108 80-200 739-847 (1636)
160 PF04840 Vps16_C: Vps16, C-ter 94.5 0.9 1.9E-05 38.1 11.4 81 143-233 178-258 (319)
161 PF13371 TPR_9: Tetratricopept 94.4 0.48 1.1E-05 29.7 7.8 55 150-206 3-58 (73)
162 KOG1156 N-terminal acetyltrans 94.4 1.3 2.7E-05 40.1 12.4 146 85-233 299-460 (700)
163 KOG2796 Uncharacterized conser 94.4 2.2 4.8E-05 34.5 13.1 129 112-245 218-360 (366)
164 PRK15363 pathogenicity island 94.4 0.57 1.2E-05 34.7 8.9 82 149-233 42-124 (157)
165 KOG2047 mRNA splicing factor [ 94.2 0.92 2E-05 41.0 11.2 189 5-203 396-612 (835)
166 KOG1174 Anaphase-promoting com 94.2 2.4 5.3E-05 36.5 13.1 144 83-233 344-492 (564)
167 KOG0495 HAT repeat protein [RN 94.1 1.5 3.2E-05 39.9 12.2 212 2-233 624-872 (913)
168 PRK14720 transcript cleavage f 94.1 2.5 5.3E-05 40.4 14.3 57 111-170 121-177 (906)
169 PRK10803 tol-pal system protei 93.9 1.3 2.8E-05 36.1 10.9 91 142-234 143-239 (263)
170 KOG1128 Uncharacterized conser 93.8 2.2 4.9E-05 39.1 12.9 153 75-233 426-608 (777)
171 KOG2053 Mitochondrial inherita 93.7 1.8 3.9E-05 40.5 12.4 130 116-252 19-153 (932)
172 PF13424 TPR_12: Tetratricopep 93.6 0.24 5.1E-06 31.7 5.1 59 112-170 11-74 (78)
173 KOG1125 TPR repeat-containing 93.5 3 6.4E-05 37.2 12.9 132 93-229 414-559 (579)
174 PRK10153 DNA-binding transcrip 93.5 1.5 3.2E-05 39.4 11.5 89 123-215 401-489 (517)
175 COG3629 DnrI DNA-binding trans 93.4 1.1 2.4E-05 36.6 9.7 74 112-187 159-237 (280)
176 KOG3060 Uncharacterized conser 93.3 3.6 7.9E-05 33.1 15.0 103 119-226 99-202 (289)
177 PF00637 Clathrin: Region in C 93.2 0.034 7.3E-07 40.5 0.7 85 111-203 12-96 (143)
178 COG4235 Cytochrome c biogenesi 93.1 3 6.5E-05 34.1 11.7 92 111-206 161-256 (287)
179 PF09205 DUF1955: Domain of un 93.1 1.1 2.3E-05 32.3 7.9 63 145-208 89-151 (161)
180 PLN03098 LPA1 LOW PSII ACCUMUL 93.1 1.7 3.7E-05 37.8 10.7 60 73-135 75-141 (453)
181 KOG0553 TPR repeat-containing 93.0 0.71 1.5E-05 37.7 7.9 108 124-247 76-186 (304)
182 KOG0985 Vesicle coat protein c 92.9 3.2 7E-05 39.8 12.8 112 75-201 1106-1218(1666)
183 KOG3785 Uncharacterized conser 92.8 1.6 3.4E-05 36.8 9.7 153 75-236 287-452 (557)
184 PF14938 SNAP: Soluble NSF att 92.8 4.7 0.0001 33.0 14.3 121 112-233 120-258 (282)
185 PRK10866 outer membrane biogen 92.7 4.5 9.7E-05 32.5 16.5 152 80-233 39-233 (243)
186 smart00299 CLH Clathrin heavy 92.5 1.8 3.9E-05 31.2 9.1 56 144-201 9-64 (140)
187 PF10300 DUF3808: Protein of u 92.4 1.4 3E-05 39.1 9.7 156 3-170 195-375 (468)
188 PF13762 MNE1: Mitochondrial s 92.3 3.4 7.3E-05 30.2 10.2 47 178-224 80-127 (145)
189 PF09205 DUF1955: Domain of un 92.1 3.4 7.4E-05 29.8 9.6 62 111-174 91-152 (161)
190 KOG2376 Signal recognition par 91.9 2.3 5E-05 38.1 10.1 118 76-208 15-141 (652)
191 KOG1156 N-terminal acetyltrans 91.8 7.6 0.00016 35.4 13.2 121 77-204 375-509 (700)
192 PRK15331 chaperone protein Sic 91.7 2.9 6.4E-05 31.2 9.3 89 114-205 45-133 (165)
193 KOG4555 TPR repeat-containing 91.7 3.7 8.1E-05 29.5 11.6 102 115-219 52-167 (175)
194 PF13512 TPR_18: Tetratricopep 91.5 4.2 9.1E-05 29.6 9.9 43 112-155 53-95 (142)
195 KOG3060 Uncharacterized conser 91.3 6.6 0.00014 31.6 14.1 117 86-208 99-222 (289)
196 KOG1915 Cell cycle control pro 91.2 7.7 0.00017 34.2 12.4 116 112-233 113-228 (677)
197 COG4700 Uncharacterized protei 91.1 5.7 0.00012 30.5 16.2 118 111-233 94-214 (251)
198 TIGR02508 type_III_yscG type I 91.1 2 4.3E-05 29.2 7.0 87 121-216 20-106 (115)
199 KOG4340 Uncharacterized conser 91.0 1.4 2.9E-05 36.3 7.4 119 81-209 86-210 (459)
200 PF13176 TPR_7: Tetratricopept 90.8 0.76 1.7E-05 24.6 4.2 23 145-167 2-24 (36)
201 PF10300 DUF3808: Protein of u 90.2 13 0.00028 33.1 14.4 150 74-228 189-356 (468)
202 PF13762 MNE1: Mitochondrial s 90.2 5.7 0.00012 29.0 10.3 97 100-197 28-134 (145)
203 KOG4570 Uncharacterized conser 89.8 4.7 0.0001 33.5 9.4 93 113-207 71-165 (418)
204 PF13176 TPR_7: Tetratricopept 89.7 0.84 1.8E-05 24.4 3.8 26 179-204 1-26 (36)
205 PF14938 SNAP: Soluble NSF att 89.6 10 0.00022 31.1 13.5 151 78-233 40-217 (282)
206 PRK04841 transcriptional regul 89.6 16 0.00034 35.2 14.8 151 82-233 461-633 (903)
207 PF00637 Clathrin: Region in C 89.4 0.13 2.8E-06 37.4 0.5 80 147-233 12-91 (143)
208 COG1729 Uncharacterized protei 89.3 9.4 0.0002 30.9 10.8 89 116-206 151-244 (262)
209 PF09477 Type_III_YscG: Bacter 89.0 4.7 0.0001 27.8 7.6 87 120-215 20-106 (116)
210 PLN02789 farnesyltranstransfer 88.9 13 0.00028 31.2 13.2 137 81-224 45-188 (320)
211 PF02284 COX5A: Cytochrome c o 88.8 3.8 8.3E-05 27.9 7.0 46 124-170 28-73 (108)
212 PF04184 ST7: ST7 protein; In 88.7 15 0.00033 32.6 12.3 78 112-190 265-344 (539)
213 KOG4570 Uncharacterized conser 88.3 3.4 7.3E-05 34.3 7.7 90 80-171 71-164 (418)
214 PF04053 Coatomer_WDAD: Coatom 88.2 12 0.00027 32.9 11.8 108 111-233 300-423 (443)
215 KOG1914 mRNA cleavage and poly 87.8 20 0.00044 32.2 15.7 149 73-226 366-524 (656)
216 PF13374 TPR_10: Tetratricopep 87.6 1.9 4.2E-05 23.3 4.5 27 143-169 3-29 (42)
217 PF13512 TPR_18: Tetratricopep 87.6 6.3 0.00014 28.7 8.1 74 116-191 20-96 (142)
218 cd00923 Cyt_c_Oxidase_Va Cytoc 87.5 6 0.00013 26.7 7.2 44 125-169 26-69 (103)
219 PF13170 DUF4003: Protein of u 87.4 15 0.00033 30.4 17.3 134 112-248 63-222 (297)
220 PF13428 TPR_14: Tetratricopep 87.3 1.8 3.8E-05 24.2 4.2 28 144-171 3-30 (44)
221 PF07079 DUF1347: Protein of u 87.3 12 0.00025 32.9 10.6 153 84-242 17-196 (549)
222 PF10366 Vps39_1: Vacuolar sor 86.7 5.1 0.00011 27.7 7.0 27 179-205 41-67 (108)
223 PF13428 TPR_14: Tetratricopep 86.6 3.9 8.5E-05 22.8 5.4 36 111-148 6-41 (44)
224 COG4455 ImpE Protein of avirul 86.4 6.1 0.00013 31.1 7.8 72 80-151 8-81 (273)
225 KOG0548 Molecular co-chaperone 86.4 11 0.00025 33.4 10.3 56 112-170 42-98 (539)
226 KOG2280 Vacuolar assembly/sort 86.3 12 0.00026 34.8 10.6 103 111-233 689-791 (829)
227 PRK10866 outer membrane biogen 86.2 13 0.00029 29.8 10.2 75 111-188 37-115 (243)
228 PRK04841 transcriptional regul 86.2 14 0.00029 35.7 12.1 117 116-233 462-594 (903)
229 PF02284 COX5A: Cytochrome c o 86.1 6.5 0.00014 26.9 6.9 76 145-221 11-88 (108)
230 KOG3617 WD40 and TPR repeat-co 85.8 7.4 0.00016 36.8 9.2 144 3-167 735-883 (1416)
231 COG4235 Cytochrome c biogenesi 85.8 18 0.0004 29.7 12.5 91 139-233 153-248 (287)
232 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 8.8 0.00019 25.9 7.2 64 157-221 22-85 (103)
233 PF13374 TPR_10: Tetratricopep 85.4 2.3 4.9E-05 23.0 4.0 29 177-205 2-30 (42)
234 PF07163 Pex26: Pex26 protein; 85.1 20 0.00043 29.4 10.4 57 113-170 90-146 (309)
235 PF11207 DUF2989: Protein of u 84.8 12 0.00026 29.0 8.8 79 152-232 117-198 (203)
236 PF13525 YfiO: Outer membrane 84.6 17 0.00036 28.2 14.1 146 80-229 12-195 (203)
237 PF13281 DUF4071: Domain of un 84.4 18 0.0004 31.0 10.6 100 147-246 146-260 (374)
238 PF00515 TPR_1: Tetratricopept 84.2 3.6 7.8E-05 21.2 4.3 27 144-170 3-29 (34)
239 KOG1174 Anaphase-promoting com 83.9 28 0.00062 30.3 12.1 126 76-206 371-500 (564)
240 KOG0495 HAT repeat protein [RN 83.8 37 0.00079 31.5 15.2 135 85-226 663-801 (913)
241 PF11848 DUF3368: Domain of un 83.8 4.8 0.0001 23.2 4.9 32 189-220 14-45 (48)
242 PF07035 Mic1: Colon cancer-as 83.0 18 0.00038 27.2 11.4 118 93-227 13-135 (167)
243 PRK11906 transcriptional regul 83.0 33 0.0007 30.3 12.7 111 120-237 318-432 (458)
244 PLN02789 farnesyltranstransfer 82.7 28 0.0006 29.3 15.6 138 82-225 80-230 (320)
245 COG3118 Thioredoxin domain-con 81.9 28 0.0006 28.8 11.7 89 112-204 174-263 (304)
246 KOG0543 FKBP-type peptidyl-pro 81.9 33 0.00071 29.6 11.8 121 81-205 216-354 (397)
247 PF07163 Pex26: Pex26 protein; 81.9 18 0.00039 29.7 8.9 86 79-165 89-181 (309)
248 PF10602 RPN7: 26S proteasome 81.8 16 0.00035 27.7 8.5 61 144-204 38-100 (177)
249 PF11846 DUF3366: Domain of un 81.2 8.9 0.00019 29.4 7.1 53 118-170 120-172 (193)
250 KOG4162 Predicted calmodulin-b 80.9 50 0.0011 31.0 13.7 113 116-233 660-775 (799)
251 KOG2376 Signal recognition par 80.8 44 0.00096 30.4 12.6 122 79-203 382-517 (652)
252 PF11663 Toxin_YhaV: Toxin wit 80.5 1.9 4E-05 31.0 2.7 28 156-185 109-136 (140)
253 KOG2280 Vacuolar assembly/sort 80.5 11 0.00023 35.1 8.0 120 103-233 635-765 (829)
254 PF11207 DUF2989: Protein of u 79.9 18 0.00039 28.1 8.1 83 112-197 113-198 (203)
255 PRK15331 chaperone protein Sic 79.9 16 0.00035 27.4 7.6 78 153-233 48-126 (165)
256 PF11846 DUF3366: Domain of un 79.6 11 0.00023 29.0 7.0 60 147-206 113-173 (193)
257 COG3118 Thioredoxin domain-con 79.5 34 0.00074 28.3 13.7 138 88-233 117-257 (304)
258 PF09613 HrpB1_HrpK: Bacterial 79.4 23 0.00051 26.4 11.2 112 112-232 16-129 (160)
259 PF10579 Rapsyn_N: Rapsyn N-te 79.1 7.3 0.00016 25.2 4.8 46 154-199 18-65 (80)
260 PF09868 DUF2095: Uncharacteri 78.8 14 0.00029 25.8 6.3 35 111-147 66-100 (128)
261 KOG2047 mRNA splicing factor [ 78.8 55 0.0012 30.3 13.0 112 111-226 174-295 (835)
262 KOG2796 Uncharacterized conser 78.6 29 0.00062 28.4 9.0 135 112-249 183-325 (366)
263 PF13281 DUF4071: Domain of un 78.5 43 0.00092 28.8 11.9 100 107-206 141-255 (374)
264 PF07079 DUF1347: Protein of u 78.4 47 0.001 29.3 12.3 102 111-224 82-206 (549)
265 PF11663 Toxin_YhaV: Toxin wit 78.3 3.4 7.4E-05 29.7 3.5 32 189-222 107-138 (140)
266 PF10602 RPN7: 26S proteasome 78.2 27 0.00059 26.4 10.3 125 100-225 26-169 (177)
267 PF13431 TPR_17: Tetratricopep 77.9 5.3 0.00012 21.0 3.5 24 139-162 10-33 (34)
268 KOG4162 Predicted calmodulin-b 77.5 64 0.0014 30.3 12.6 127 74-206 651-783 (799)
269 PF13929 mRNA_stabil: mRNA sta 77.2 40 0.00086 27.8 10.6 122 118-239 140-265 (292)
270 PF08780 NTase_sub_bind: Nucle 76.6 13 0.00028 26.4 6.2 88 122-216 6-96 (124)
271 PRK15180 Vi polysaccharide bio 76.6 34 0.00074 30.5 9.6 123 80-205 296-419 (831)
272 COG0735 Fur Fe2+/Zn2+ uptake r 76.6 17 0.00036 26.6 6.9 60 95-156 7-69 (145)
273 TIGR02561 HrpB1_HrpK type III 76.5 28 0.00061 25.7 11.1 91 118-213 22-113 (153)
274 COG5107 RNA14 Pre-mRNA 3'-end 75.9 57 0.0012 28.9 13.4 143 73-223 397-546 (660)
275 KOG1127 TPR repeat-containing 75.6 48 0.001 32.3 10.9 52 111-164 497-548 (1238)
276 KOG3617 WD40 and TPR repeat-co 75.5 27 0.00059 33.3 9.1 101 115-233 737-847 (1416)
277 PF07721 TPR_4: Tetratricopept 74.2 5.7 0.00012 19.3 2.8 16 150-165 9-24 (26)
278 KOG2297 Predicted translation 74.0 5.5 0.00012 33.0 4.1 68 122-196 271-340 (412)
279 PF11848 DUF3368: Domain of un 73.8 15 0.00032 21.2 5.2 33 116-149 12-44 (48)
280 PF13525 YfiO: Outer membrane 73.7 24 0.00051 27.3 7.6 115 112-233 11-131 (203)
281 PRK10564 maltose regulon perip 72.8 8.4 0.00018 31.8 4.9 43 138-180 252-295 (303)
282 KOG0548 Molecular co-chaperone 72.1 75 0.0016 28.5 11.5 99 114-224 366-471 (539)
283 COG4455 ImpE Protein of avirul 71.9 41 0.00089 26.7 8.1 75 111-187 6-82 (273)
284 KOG0543 FKBP-type peptidyl-pro 71.6 67 0.0014 27.8 11.0 106 115-223 217-335 (397)
285 COG3947 Response regulator con 71.4 23 0.00049 29.3 6.9 58 145-203 282-339 (361)
286 PF07719 TPR_2: Tetratricopept 71.4 12 0.00025 19.0 4.3 24 147-170 6-29 (34)
287 cd00280 TRFH Telomeric Repeat 71.3 44 0.00096 25.6 8.5 67 122-192 85-158 (200)
288 PRK11639 zinc uptake transcrip 70.4 27 0.00058 26.3 6.9 65 95-160 12-78 (169)
289 KOG1127 TPR repeat-containing 70.4 53 0.0012 32.0 9.9 82 118-204 574-657 (1238)
290 PF14689 SPOB_a: Sensor_kinase 70.4 16 0.00035 22.3 4.8 18 149-166 30-47 (62)
291 PF08631 SPO22: Meiosis protei 70.4 58 0.0013 26.6 14.8 220 6-233 3-267 (278)
292 PRK11639 zinc uptake transcrip 69.9 37 0.00081 25.5 7.6 40 154-193 37-76 (169)
293 PF11123 DNA_Packaging_2: DNA 69.5 22 0.00047 22.6 5.1 33 121-155 12-44 (82)
294 PF09454 Vps23_core: Vps23 cor 69.4 13 0.00029 23.0 4.2 50 139-189 5-54 (65)
295 PF14689 SPOB_a: Sensor_kinase 69.2 8.5 0.00018 23.5 3.3 46 158-205 6-51 (62)
296 PRK10564 maltose regulon perip 69.0 10 0.00022 31.3 4.6 48 172-219 251-299 (303)
297 TIGR03504 FimV_Cterm FimV C-te 68.9 12 0.00026 21.2 3.6 24 148-171 5-28 (44)
298 KOG1538 Uncharacterized conser 68.3 58 0.0013 30.3 9.3 50 81-131 606-657 (1081)
299 KOG0550 Molecular chaperone (D 68.0 84 0.0018 27.5 10.1 51 154-204 261-314 (486)
300 KOG2114 Vacuolar assembly/sort 67.5 40 0.00087 32.0 8.4 74 85-164 380-453 (933)
301 PF10475 DUF2450: Protein of u 66.8 42 0.00091 27.7 8.0 109 112-233 104-218 (291)
302 COG4105 ComL DNA uptake lipopr 66.8 57 0.0012 26.4 8.3 75 113-188 41-117 (254)
303 PF08311 Mad3_BUB1_I: Mad3/BUB 66.7 43 0.00094 23.7 7.8 45 123-167 80-124 (126)
304 PF09613 HrpB1_HrpK: Bacterial 66.6 52 0.0011 24.6 8.3 76 144-225 9-90 (160)
305 COG3898 Uncharacterized membra 65.5 93 0.002 27.1 13.5 97 77-176 192-297 (531)
306 TIGR02561 HrpB1_HrpK type III 64.8 54 0.0012 24.2 7.8 50 154-207 22-74 (153)
307 COG5108 RPO41 Mitochondrial DN 63.6 52 0.0011 30.6 8.2 95 108-205 30-131 (1117)
308 PF08631 SPO22: Meiosis protei 63.6 81 0.0018 25.8 12.0 99 112-213 90-193 (278)
309 TIGR03504 FimV_Cterm FimV C-te 63.2 16 0.00035 20.6 3.4 26 183-208 5-30 (44)
310 COG0735 Fur Fe2+/Zn2+ uptake r 63.1 57 0.0012 23.8 7.3 64 164-228 8-71 (145)
311 PF10579 Rapsyn_N: Rapsyn N-te 62.9 37 0.00081 22.0 5.4 47 118-165 18-66 (80)
312 KOG1538 Uncharacterized conser 62.4 53 0.0012 30.5 8.0 82 113-206 753-846 (1081)
313 PF11817 Foie-gras_1: Foie gra 62.1 33 0.00072 27.5 6.4 64 141-204 177-245 (247)
314 COG3947 Response regulator con 62.1 67 0.0014 26.7 7.9 89 140-233 242-334 (361)
315 KOG2114 Vacuolar assembly/sort 61.8 1.5E+02 0.0033 28.4 11.0 144 75-233 336-484 (933)
316 PF11838 ERAP1_C: ERAP1-like C 60.9 95 0.0021 25.6 13.3 108 112-223 135-246 (324)
317 KOG2908 26S proteasome regulat 60.7 60 0.0013 27.5 7.5 75 148-222 81-166 (380)
318 KOG0624 dsRNA-activated protei 60.4 1.1E+02 0.0024 26.2 13.5 146 80-233 196-362 (504)
319 PF13174 TPR_6: Tetratricopept 60.2 14 0.0003 18.5 2.7 20 151-170 9-28 (33)
320 PF13929 mRNA_stabil: mRNA sta 60.1 99 0.0021 25.6 15.3 92 112-207 170-264 (292)
321 cd07153 Fur_like Ferric uptake 59.9 28 0.0006 24.0 5.0 42 151-192 9-50 (116)
322 PF11838 ERAP1_C: ERAP1-like C 59.6 1E+02 0.0022 25.5 12.2 117 104-226 166-289 (324)
323 smart00804 TAP_C C-terminal do 59.6 8.8 0.00019 23.6 2.1 43 98-142 18-61 (63)
324 PF09454 Vps23_core: Vps23 cor 59.5 9 0.0002 23.8 2.1 53 173-226 4-56 (65)
325 PF13181 TPR_8: Tetratricopept 59.4 22 0.00048 17.9 4.3 27 144-170 3-29 (34)
326 KOG4648 Uncharacterized conser 59.4 40 0.00086 28.7 6.3 92 114-215 105-201 (536)
327 KOG2396 HAT (Half-A-TPR) repea 58.9 1.4E+02 0.003 26.9 12.2 89 111-204 465-557 (568)
328 PF13934 ELYS: Nuclear pore co 58.8 90 0.0019 24.7 10.9 117 102-233 72-197 (226)
329 COG5108 RPO41 Mitochondrial DN 57.6 1.1E+02 0.0024 28.6 9.2 89 77-170 32-131 (1117)
330 PF10366 Vps39_1: Vacuolar sor 57.5 60 0.0013 22.3 7.0 27 144-170 41-67 (108)
331 KOG4555 TPR repeat-containing 57.1 59 0.0013 23.6 6.1 80 151-232 52-135 (175)
332 KOG0550 Molecular chaperone (D 57.0 76 0.0016 27.7 7.7 87 117-206 260-350 (486)
333 KOG2659 LisH motif-containing 56.8 97 0.0021 24.6 7.8 93 108-204 28-130 (228)
334 COG4003 Uncharacterized protei 56.5 53 0.0012 21.4 6.9 31 111-143 36-66 (98)
335 PF04053 Coatomer_WDAD: Coatom 54.2 1.6E+02 0.0034 26.1 9.7 76 111-202 352-427 (443)
336 PRK09462 fur ferric uptake reg 54.1 70 0.0015 23.3 6.5 60 98-158 6-68 (148)
337 COG1729 Uncharacterized protei 54.0 1.2E+02 0.0026 24.7 10.8 91 81-171 149-244 (262)
338 cd00280 TRFH Telomeric Repeat 53.7 1E+02 0.0022 23.8 7.6 43 111-157 116-158 (200)
339 PRK09462 fur ferric uptake reg 53.4 85 0.0018 22.8 7.1 34 193-226 33-66 (148)
340 TIGR01987 HI0074 nucleotidyltr 53.2 79 0.0017 22.4 8.1 57 158-216 38-96 (123)
341 KOG0624 dsRNA-activated protei 52.3 1.5E+02 0.0033 25.4 14.6 158 80-242 162-339 (504)
342 smart00028 TPR Tetratricopepti 52.2 25 0.00054 16.3 3.2 25 145-169 4-28 (34)
343 PF01475 FUR: Ferric uptake re 52.0 30 0.00064 24.1 4.1 48 182-229 12-59 (120)
344 KOG2908 26S proteasome regulat 50.8 1.6E+02 0.0034 25.1 9.3 82 112-193 81-173 (380)
345 COG4105 ComL DNA uptake lipopr 50.3 1.4E+02 0.003 24.3 16.8 153 78-233 39-225 (254)
346 PF11817 Foie-gras_1: Foie gra 50.3 98 0.0021 24.8 7.3 54 180-233 181-239 (247)
347 PF12796 Ank_2: Ankyrin repeat 50.1 42 0.00091 21.5 4.4 13 199-211 74-86 (89)
348 PF04184 ST7: ST7 protein; In 49.7 2E+02 0.0043 26.0 16.8 139 78-219 173-338 (539)
349 PRK13713 conjugal transfer pro 48.7 92 0.002 21.8 6.7 29 123-152 7-35 (118)
350 smart00386 HAT HAT (Half-A-TPR 48.6 33 0.00072 16.7 4.1 26 121-148 2-27 (33)
351 KOG4077 Cytochrome c oxidase, 48.6 1E+02 0.0022 22.2 7.2 44 127-171 70-113 (149)
352 PRK07764 DNA polymerase III su 48.1 2.2E+02 0.0047 27.6 10.1 84 123-211 182-281 (824)
353 PF07443 HARP: HepA-related pr 48.0 9.2 0.0002 22.8 0.8 33 157-189 7-39 (55)
354 KOG0403 Neoplastic transformat 47.8 1.4E+02 0.0031 26.5 8.0 74 111-190 514-587 (645)
355 KOG0159 Cytochrome P450 CYP11/ 47.5 2.2E+02 0.0047 25.8 9.5 54 190-243 311-364 (519)
356 PF02184 HAT: HAT (Half-A-TPR) 47.5 32 0.00069 18.0 2.6 13 158-170 3-15 (32)
357 PF07875 Coat_F: Coat F domain 47.3 25 0.00055 21.5 2.8 19 122-140 44-62 (64)
358 KOG4567 GTPase-activating prot 47.0 74 0.0016 26.7 5.9 58 162-224 263-320 (370)
359 KOG2214 Predicted esterase of 46.9 1.2E+02 0.0026 27.2 7.6 73 98-170 194-274 (543)
360 PF14669 Asp_Glu_race_2: Putat 46.7 51 0.0011 25.6 4.7 55 147-201 137-205 (233)
361 PHA02875 ankyrin repeat protei 46.6 1.8E+02 0.004 25.0 9.0 11 112-122 38-48 (413)
362 PF01475 FUR: Ferric uptake re 46.2 27 0.00059 24.3 3.2 45 111-156 12-56 (120)
363 KOG0276 Vesicle coat complex C 46.0 2.5E+02 0.0054 26.1 11.5 99 113-233 644-742 (794)
364 KOG4077 Cytochrome c oxidase, 45.7 1.1E+02 0.0024 22.0 7.0 61 159-220 66-126 (149)
365 KOG1920 IkappaB kinase complex 45.4 1.3E+02 0.0029 30.0 8.2 78 112-201 971-1050(1265)
366 PF02847 MA3: MA3 domain; Int 45.4 53 0.0011 22.4 4.5 22 111-132 7-28 (113)
367 PF02607 B12-binding_2: B12 bi 45.4 37 0.0008 21.4 3.5 32 156-187 15-46 (79)
368 PF02847 MA3: MA3 domain; Int 45.0 97 0.0021 21.0 6.4 59 77-136 6-67 (113)
369 PRK09857 putative transposase; 44.8 1.8E+02 0.0039 24.1 8.9 66 145-211 209-274 (292)
370 PF02607 B12-binding_2: B12 bi 44.5 36 0.00078 21.5 3.3 39 189-227 13-51 (79)
371 COG4003 Uncharacterized protei 43.9 40 0.00088 21.9 3.2 26 182-207 36-61 (98)
372 KOG2041 WD40 repeat protein [G 42.6 1.5E+02 0.0032 28.1 7.6 25 176-200 851-875 (1189)
373 cd08315 Death_TRAILR_DR4_DR5 D 42.3 1.1E+02 0.0023 20.7 7.7 48 122-172 47-94 (96)
374 KOG2911 Uncharacterized conser 42.0 1.8E+02 0.0038 25.5 7.7 54 158-228 147-204 (439)
375 PF04719 TAFII28: hTAFII28-lik 40.9 75 0.0016 21.2 4.3 63 78-140 14-80 (90)
376 PRK08691 DNA polymerase III su 40.8 3.2E+02 0.007 25.9 10.8 85 123-211 181-279 (709)
377 PRK14956 DNA polymerase III su 40.4 2.8E+02 0.006 25.0 11.8 74 118-214 212-285 (484)
378 cd08318 Death_NMPP84 Death dom 40.3 60 0.0013 21.3 3.9 42 121-165 45-86 (86)
379 PF13934 ELYS: Nuclear pore co 40.1 1.9E+02 0.0041 22.9 10.6 126 73-212 76-204 (226)
380 PLN03025 replication factor C 39.9 2.2E+02 0.0048 23.7 10.8 90 123-216 161-263 (319)
381 cd08048 TAF11 TATA Binding Pro 38.7 1.1E+02 0.0025 20.0 5.4 61 81-141 10-75 (85)
382 KOG4567 GTPase-activating prot 38.3 2.4E+02 0.0053 23.8 7.6 58 126-189 263-320 (370)
383 COG2812 DnaX DNA polymerase II 38.0 3.1E+02 0.0068 24.9 12.1 76 101-179 192-282 (515)
384 PF09435 DUF2015: Fungal prote 37.8 1.3E+02 0.0028 21.5 5.3 44 82-141 76-121 (128)
385 PF03745 DUF309: Domain of unk 37.7 96 0.0021 18.9 5.4 47 153-199 10-61 (62)
386 COG4700 Uncharacterized protei 37.3 2E+02 0.0043 22.4 15.9 151 74-232 27-180 (251)
387 KOG2041 WD40 repeat protein [G 37.2 2.2E+02 0.0047 27.1 7.8 62 176-237 808-877 (1189)
388 cd07229 Pat_TGL3_like Triacylg 37.2 1.6E+02 0.0035 25.6 6.9 132 96-233 101-258 (391)
389 KOG4648 Uncharacterized conser 37.2 83 0.0018 26.9 4.9 71 151-231 106-177 (536)
390 PF09868 DUF2095: Uncharacteri 36.8 54 0.0012 22.9 3.2 32 171-208 61-92 (128)
391 TIGR02710 CRISPR-associated pr 36.8 1.6E+02 0.0034 25.6 6.7 55 112-167 136-196 (380)
392 TIGR00510 lipA lipoate synthas 36.3 48 0.001 27.6 3.5 74 127-207 157-235 (302)
393 COG2405 Predicted nucleic acid 35.9 89 0.0019 22.8 4.3 43 178-221 111-153 (157)
394 PF14669 Asp_Glu_race_2: Putat 35.8 1.4E+02 0.0031 23.2 5.6 57 111-167 137-206 (233)
395 PRK14958 DNA polymerase III su 35.7 3.4E+02 0.0073 24.6 11.8 79 131-213 190-281 (509)
396 COG2987 HutU Urocanate hydrata 35.4 25 0.00055 30.7 1.8 67 119-199 216-287 (561)
397 PRK12928 lipoyl synthase; Prov 35.4 55 0.0012 27.1 3.8 58 146-207 175-232 (290)
398 TIGR01529 argR_whole arginine 35.2 94 0.002 22.7 4.6 38 183-220 6-43 (146)
399 PRK14951 DNA polymerase III su 35.0 3.8E+02 0.0083 25.0 10.7 85 123-211 186-284 (618)
400 KOG0687 26S proteasome regulat 34.7 2.9E+02 0.0062 23.6 7.6 66 144-209 106-176 (393)
401 KOG0276 Vesicle coat complex C 34.4 3.4E+02 0.0075 25.3 8.5 102 82-203 646-747 (794)
402 cd07153 Fur_like Ferric uptake 34.3 85 0.0019 21.5 4.2 45 112-157 6-50 (116)
403 cd08317 Death_ank Death domain 34.3 1.3E+02 0.0028 19.4 4.9 40 122-164 44-83 (84)
404 PRK13342 recombination factor 34.2 3.2E+02 0.0069 23.8 12.0 72 156-227 244-320 (413)
405 PF07035 Mic1: Colon cancer-as 34.1 2E+02 0.0044 21.6 13.1 92 131-233 19-110 (167)
406 cd04445 DEP_PLEK1 DEP (Disheve 33.8 1.2E+02 0.0026 20.5 4.4 62 152-213 6-71 (99)
407 smart00544 MA3 Domain in DAP-5 33.4 1.6E+02 0.0034 20.0 10.3 23 111-133 7-29 (113)
408 PF12862 Apc5: Anaphase-promot 32.9 1.5E+02 0.0032 19.6 7.4 21 150-170 49-69 (94)
409 PF09670 Cas_Cas02710: CRISPR- 32.9 2.3E+02 0.0051 24.4 7.3 57 113-171 138-198 (379)
410 PF14162 YozD: YozD-like prote 32.5 1.1E+02 0.0023 17.9 3.9 17 196-212 14-30 (57)
411 KOG1550 Extracellular protein 32.4 4E+02 0.0086 24.4 14.9 121 83-207 259-394 (552)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 31.7 1.9E+02 0.0041 20.5 7.6 43 160-202 81-124 (126)
413 KOG2536 MAM33, mitochondrial m 31.2 1.7E+02 0.0038 23.7 5.7 41 94-134 219-259 (263)
414 TIGR01228 hutU urocanate hydra 31.0 37 0.0008 30.2 2.1 68 119-200 207-279 (545)
415 PRK11906 transcriptional regul 30.9 3.9E+02 0.0084 23.9 11.2 83 116-203 348-433 (458)
416 smart00544 MA3 Domain in DAP-5 30.2 1.8E+02 0.0039 19.7 8.0 62 145-208 5-68 (113)
417 smart00005 DEATH DEATH domain, 30.2 1.5E+02 0.0033 19.0 7.1 50 112-164 36-85 (88)
418 smart00164 TBC Domain in Tre-2 30.1 1.7E+02 0.0037 22.1 5.6 83 121-207 108-197 (199)
419 cd08819 CARD_MDA5_2 Caspase ac 29.9 1.7E+02 0.0037 19.4 6.9 39 118-162 48-86 (88)
420 PRK07003 DNA polymerase III su 29.9 5.2E+02 0.011 25.0 11.2 86 122-211 180-279 (830)
421 PF07304 SRA1: Steroid recepto 29.8 1.3E+02 0.0028 22.4 4.6 18 118-135 102-119 (157)
422 PRK05414 urocanate hydratase; 29.5 37 0.0008 30.3 1.9 68 119-200 216-288 (556)
423 PF02631 RecX: RecX family; I 29.3 2E+02 0.0043 20.0 11.0 110 85-201 3-117 (121)
424 PRK14963 DNA polymerase III su 28.4 4.5E+02 0.0097 23.8 10.7 86 122-211 177-275 (504)
425 PF06576 DUF1133: Protein of u 28.2 2.7E+02 0.0058 21.1 8.2 19 212-230 116-134 (176)
426 COG2987 HutU Urocanate hydrata 28.0 88 0.0019 27.6 3.8 67 154-233 215-286 (561)
427 COG1466 HolA DNA polymerase II 28.0 3.7E+02 0.008 22.6 9.4 79 130-211 151-242 (334)
428 smart00777 Mad3_BUB1_I Mad3/BU 27.7 1.7E+02 0.0036 20.9 4.6 41 161-201 82-123 (125)
429 PF05944 Phage_term_smal: Phag 27.6 1.9E+02 0.0042 20.8 5.0 20 153-172 59-78 (132)
430 smart00164 TBC Domain in Tre-2 27.5 2.4E+02 0.0051 21.3 6.0 45 127-172 152-197 (199)
431 PRK05414 urocanate hydratase; 27.3 82 0.0018 28.2 3.6 66 155-233 216-286 (556)
432 COG0457 NrfG FOG: TPR repeat [ 27.2 2.5E+02 0.0054 20.4 16.8 120 112-233 101-223 (291)
433 TIGR01914 cas_Csa4 CRISPR-asso 27.1 3.9E+02 0.0085 22.7 7.5 74 146-224 278-353 (354)
434 KOG1130 Predicted G-alpha GTPa 27.0 59 0.0013 28.5 2.6 50 115-166 26-79 (639)
435 PF14853 Fis1_TPR_C: Fis1 C-te 27.0 1.4E+02 0.0031 17.5 3.6 21 150-170 9-29 (53)
436 COG2137 OraA Uncharacterized p 26.5 2.9E+02 0.0063 21.0 11.9 96 126-226 55-151 (174)
437 KOG2610 Uncharacterized conser 26.3 4.2E+02 0.0091 22.8 13.1 111 119-233 116-230 (491)
438 cd08791 DED_DEDD2 Death Effect 26.3 2E+02 0.0043 19.7 4.5 57 121-180 48-104 (106)
439 TIGR01228 hutU urocanate hydra 26.3 91 0.002 27.9 3.7 66 155-233 207-277 (545)
440 COG0457 NrfG FOG: TPR repeat [ 26.3 2.6E+02 0.0056 20.3 13.9 117 115-233 139-257 (291)
441 COG5210 GTPase-activating prot 26.1 1.9E+02 0.0042 26.0 5.9 46 163-208 363-408 (496)
442 KOG2223 Uncharacterized conser 25.8 3.3E+02 0.0072 24.1 6.8 54 128-185 461-514 (586)
443 PF14840 DNA_pol3_delt_C: Proc 25.3 64 0.0014 22.9 2.2 28 154-181 9-36 (125)
444 COG2405 Predicted nucleic acid 25.1 1.8E+02 0.0039 21.3 4.3 39 112-151 115-153 (157)
445 PF04124 Dor1: Dor1-like famil 25.0 2.2E+02 0.0047 24.1 5.7 37 111-147 111-147 (338)
446 COG4649 Uncharacterized protei 24.9 3.3E+02 0.0071 21.0 13.4 128 82-211 67-201 (221)
447 COG5210 GTPase-activating prot 24.9 2.3E+02 0.0051 25.4 6.2 63 123-186 359-421 (496)
448 PF07218 RAP1: Rhoptry-associa 24.8 3E+02 0.0066 25.2 6.5 65 151-221 587-658 (782)
449 cd08779 Death_PIDD Death Domai 24.2 2.1E+02 0.0046 18.6 5.4 43 122-166 42-84 (86)
450 PF03943 TAP_C: TAP C-terminal 24.2 21 0.00045 20.9 -0.4 41 100-142 8-49 (51)
451 COG1747 Uncharacterized N-term 24.1 5.6E+02 0.012 23.5 9.8 152 75-233 68-226 (711)
452 KOG0275 Conserved WD40 repeat- 24.0 4.1E+02 0.0089 22.5 6.8 88 75-167 9-99 (508)
453 COG0320 LipA Lipoate synthase 23.6 74 0.0016 26.1 2.5 49 156-208 194-242 (306)
454 KOG0031 Myosin regulatory ligh 23.6 3.2E+02 0.0069 20.4 6.4 105 111-220 53-164 (171)
455 PF12926 MOZART2: Mitotic-spin 23.4 2.3E+02 0.005 18.8 7.6 42 163-204 29-70 (88)
456 cd04439 DEP_1_P-Rex DEP (Dishe 23.3 1.6E+02 0.0034 19.1 3.6 36 173-208 24-62 (81)
457 PF14840 DNA_pol3_delt_C: Proc 23.3 81 0.0018 22.4 2.4 29 118-147 9-37 (125)
458 KOG1920 IkappaB kinase complex 23.2 8.1E+02 0.018 25.0 11.8 17 138-154 931-947 (1265)
459 KOG2297 Predicted translation 23.1 4.7E+02 0.01 22.2 7.7 72 85-162 267-341 (412)
460 TIGR02710 CRISPR-associated pr 23.1 4.1E+02 0.0088 23.1 6.9 49 80-129 137-194 (380)
461 cd08777 Death_RIP1 Death Domai 23.0 2.3E+02 0.005 18.6 4.8 42 122-165 43-84 (86)
462 PF12793 SgrR_N: Sugar transpo 22.7 2.8E+02 0.006 19.4 5.5 45 122-166 33-94 (115)
463 KOG1147 Glutamyl-tRNA syntheta 22.0 1.1E+02 0.0025 27.7 3.5 71 127-206 254-332 (712)
464 PF12554 MOZART1: Mitotic-spin 21.8 1.7E+02 0.0036 17.0 3.0 22 189-210 16-37 (48)
465 PF04034 DUF367: Domain of unk 21.8 3.1E+02 0.0067 19.6 6.0 51 112-166 72-123 (127)
466 cd08311 Death_p75NR Death doma 21.6 2.3E+02 0.005 18.1 4.3 36 123-163 40-75 (77)
467 PRK13341 recombination factor 21.3 7.3E+02 0.016 23.8 12.0 39 189-227 270-308 (725)
468 PF10963 DUF2765: Protein of u 21.3 1.4E+02 0.0031 19.5 3.0 28 138-165 12-39 (83)
469 PF07575 Nucleopor_Nup85: Nup8 21.3 3.5E+02 0.0075 24.8 6.6 58 111-171 410-467 (566)
470 cd08818 CARD_MDA5_1 Caspase ac 21.1 2.6E+02 0.0057 18.5 4.6 30 92-121 51-81 (88)
471 PF10475 DUF2450: Protein of u 21.0 3.9E+02 0.0085 22.0 6.4 81 111-197 132-217 (291)
472 PHA00425 DNA packaging protein 21.0 2.5E+02 0.0054 18.2 4.8 33 121-155 14-46 (88)
473 PRK14970 DNA polymerase III su 20.9 5.2E+02 0.011 21.9 11.0 73 133-210 181-267 (367)
474 PHA02875 ankyrin repeat protei 20.6 4.7E+02 0.01 22.4 7.2 43 166-212 185-230 (413)
475 KOG3807 Predicted membrane pro 20.5 2.4E+02 0.0052 24.1 4.9 65 85-149 287-354 (556)
476 PF01335 DED: Death effector d 20.5 2.5E+02 0.0054 18.0 4.2 40 125-166 39-78 (84)
477 cd07229 Pat_TGL3_like Triacylg 20.4 5.8E+02 0.013 22.3 8.8 101 127-233 100-207 (391)
478 KOG0403 Neoplastic transformat 20.3 5.9E+02 0.013 22.9 7.3 74 146-224 513-586 (645)
479 COG0292 RplT Ribosomal protein 20.2 3.2E+02 0.0068 19.1 4.6 13 178-190 74-86 (118)
480 KOG2058 Ypt/Rab GTPase activat 20.1 3.8E+02 0.0081 23.8 6.2 83 122-207 260-347 (436)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-41 Score=313.93 Aligned_cols=245 Identities=11% Similarity=0.086 Sum_probs=131.4
Q ss_pred cccccccCCchHHHHHHHHHhcCCC------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccc---
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNPS------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIG--- 73 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~~------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~--- 73 (256)
|++|++.|+.+.|.++|++|.+.|+ |+++|.+|++.++++.+ +++|.+|...+..|+..+++.++.
T Consensus 479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeA-----l~lf~~M~~~Gv~PD~vTYnsLI~a~~ 553 (1060)
T PLN03218 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA-----FGAYGIMRSKNVKPDRVVFNALISACG 553 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4555666666666666666655443 56666666666655555 566666655555554443333321
Q ss_pred --------------------------hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHH
Q 025226 74 --------------------------KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETIL 124 (256)
Q Consensus 74 --------------------------~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~ 124 (256)
..+..+|.+|++.|++++|. .+++.|.+.|+.|+.. ++|.+|++.|++++
T Consensus 554 k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~-elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK-EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred HCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 12334455555555555554 3334555555554443 35555555555555
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 125 a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
|.++|++|.+.| +.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.
T Consensus 633 Al~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 633 ALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 555555555555 5555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred hCCCCCChhHHHHHHHHhcCCCChHHHHH----hhhhhcCCCcccccchhHhhc
Q 025226 205 KSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELFPEKHAYDPPEEIFG 254 (256)
Q Consensus 205 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~----~~~~~~~p~~~~~~~li~~y~ 254 (256)
+.|+.||..|||+||.+|++.|++++|.+ |...|+.||..||+++|++|+
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 55555555555555555555555555555 444555555555555555554
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9.1e-41 Score=310.21 Aligned_cols=238 Identities=15% Similarity=0.111 Sum_probs=144.6
Q ss_pred ccccccccCCchHHHHHHHHHhcCCC------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchh
Q 025226 2 ATRLFSRSKIPILASIVLQNLTKNPS------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKE 75 (256)
Q Consensus 2 ~i~~~~~~~~~~~A~~l~~~m~~~~~------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 75 (256)
.|++|++.|+.+.|.++|+.|.+.|+ |+++|.+|++.++++.+ .++|++|...+..|+..+++.+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A-----~~vf~eM~~~Gv~PdvvTynaL---- 513 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM-----FEVFHEMVNAGVEANVHTFGAL---- 513 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHH-----HHHHHHHHHcCCCCCHHHHHHH----
Confidence 46788999999999999999998876 99999999999999888 9999999988888866665554
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHh--cCCCCCCHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRK--QDWYQPDAYIYKDLII 150 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~y~~li~ 150 (256)
|.+|++.|+.++|+ .+++.|...|+.||.. ++|++|++.|++++|.++|++|.+ .| +.||.+||+++|.
T Consensus 514 ----I~gy~k~G~~eeAl-~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ 587 (1060)
T PLN03218 514 ----IDGCARAGQVAKAF-GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMK 587 (1060)
T ss_pred ----HHHHHHCcCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHH
Confidence 55555555555554 3334555555555543 355555555555555555555543 23 4555555555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
+|++.|++++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHH----hhhhhcCCCcccccchhHhhc
Q 025226 231 KVK----KDFEELFPEKHAYDPPEEIFG 254 (256)
Q Consensus 231 a~~----~~~~~~~p~~~~~~~li~~y~ 254 (256)
|.+ |...|+.||..+|++||++|+
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 444 344444445445555554444
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.1e-40 Score=300.65 Aligned_cols=243 Identities=14% Similarity=0.135 Sum_probs=216.6
Q ss_pred ccccccccCCchHHHHHHHHHhcCCC--ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccccc---------
Q 025226 2 ATRLFSRSKIPILASIVLQNLTKNPS--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKK--------- 70 (256)
Q Consensus 2 ~i~~~~~~~~~~~A~~l~~~m~~~~~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~--------- 70 (256)
.|++|++.|+.+.|.++|++|.+.+. ||+++++|++.++++.+ +.+|++|...+..|+..++..
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A-----~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREA-----FALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHH-----HHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 36788999999999999999988776 99999999999988888 999999987776665443322
Q ss_pred --------------------------cc-----------------------chhHHHHHHHhhcCCCcHHHHHHHHHHHh
Q 025226 71 --------------------------LI-----------------------GKEALFVILGLKRFKDDEEKLQKFIKTHV 101 (256)
Q Consensus 71 --------------------------~~-----------------------~~~~~~~i~~~~~~~~~~~a~~~~~~~~~ 101 (256)
++ ...|..+|.+|++.|+.++|+ .++++|.
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~-~lf~~M~ 317 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEAL-CLYYEMR 317 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHH-HHHHHHH
Confidence 11 126788899999999999998 5668899
Q ss_pred hccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 025226 102 LRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178 (256)
Q Consensus 102 ~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 178 (256)
+.|+.||.. ++|++|++.|++++|.++|++|.+.| +.||..+||+||++|+++|++++|.++|++|.+ ||+.
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999887 49999999999999999999999999 999999999999999999999999999999986 8999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH----hh-hhhcCCCcccccchhHhh
Q 025226 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KD-FEELFPEKHAYDPPEEIF 253 (256)
Q Consensus 179 t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~----~~-~~~~~p~~~~~~~li~~y 253 (256)
|||+||.+|++.|+.++|.++|++|.+.|++||..||+++|.+|++.|.+++|.+ |. ..++.|+..+|+++|++|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 43 368999999999999999
Q ss_pred cc
Q 025226 254 GK 255 (256)
Q Consensus 254 ~~ 255 (256)
++
T Consensus 473 ~r 474 (697)
T PLN03081 473 GR 474 (697)
T ss_pred Hh
Confidence 86
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-38 Score=289.01 Aligned_cols=235 Identities=14% Similarity=0.138 Sum_probs=213.8
Q ss_pred ccccccccCCchHHHHHHHHHhcCCC--ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 2 ATRLFSRSKIPILASIVLQNLTKNPS--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 2 ~i~~~~~~~~~~~A~~l~~~m~~~~~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.|.+|+++|+.++|.++|++|.+.+. ||+++.+|++.++.+.+ +++|++|...+..|+.. ++..+
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA-----~~lf~~M~~~g~~pd~~--------t~~~l 331 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEA-----LCLYYEMRDSGVSIDQF--------TFSIM 331 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHH-----HHHHHHHHHcCCCCCHH--------HHHHH
Confidence 36789999999999999999988876 99999999999999999 99999999988888444 55566
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
+.+|++.|..+++. .++..|.+.|+.||.. +||++|++.|++++|.++|++|. .||+.+||+||.+|++.|
T Consensus 332 l~a~~~~g~~~~a~-~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-----~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 332 IRIFSRLALLEHAK-QAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-----RKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHhccchHHHH-HHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-----CCCeeeHHHHHHHHHHcC
Confidence 99999999999997 6778999999999876 69999999999999999999986 579999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCChhHHHHHHHHhcCCCChHHHHH-h
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK-SPDPPEELPFRILLKGLLPHPLLRSKVK-K 234 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~-~ 234 (256)
+.++|.++|++|.+.|+.||.+||+++|.+|++.|++++|.++|++|.+ .|+.|+..+|++||++|++.|++++|.+ .
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986 5999999999999999999999999998 4
Q ss_pred hhhhcCCCcccccchhHhhcc
Q 025226 235 DFEELFPEKHAYDPPEEIFGK 255 (256)
Q Consensus 235 ~~~~~~p~~~~~~~li~~y~~ 255 (256)
...++.|+..+|++|+++|..
T Consensus 486 ~~~~~~p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 486 RRAPFKPTVNMWAALLTACRI 506 (697)
T ss_pred HHCCCCCCHHHHHHHHHHHHH
Confidence 445678999999999988753
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.6e-37 Score=288.08 Aligned_cols=246 Identities=13% Similarity=0.200 Sum_probs=202.1
Q ss_pred cccccccCCchHHHHHHHHHhcCCC--ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccccccc--------
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNPS--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLI-------- 72 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~-------- 72 (256)
|.+|+++|+.+.|.++|++|.+.+. ||+++++|++.+...++ +.+|.+|...+..|+..+++.++
T Consensus 229 i~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA-----l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 229 ITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-----LELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH-----HHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 5667777777777777777776655 77777777777777777 77777777766666655544433
Q ss_pred --------------------------------------------------chhHHHHHHHhhcCCCcHHHHHHHHHHHhh
Q 025226 73 --------------------------------------------------GKEALFVILGLKRFKDDEEKLQKFIKTHVL 102 (256)
Q Consensus 73 --------------------------------------------------~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~ 102 (256)
...|..+|.+|++.|+.++|+ .++++|.+
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~-~lf~~M~~ 382 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKAL-ETYALMEQ 382 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHH-HHHHHHHH
Confidence 126788899999999999997 56688999
Q ss_pred ccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------
Q 025226 103 RLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED------- 172 (256)
Q Consensus 103 ~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g------- 172 (256)
.|+.||.. ++|.+|++.|++++|.++|+.|.+.| +.|+..+||+||.+|+++|++++|.++|++|.+.+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG-LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 99999876 58999999999999999999999998 88999999999999999998888888888875532
Q ss_pred -----------------------C--------------------------------------------------------
Q 025226 173 -----------------------L-------------------------------------------------------- 173 (256)
Q Consensus 173 -----------------------~-------------------------------------------------------- 173 (256)
+
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 1
Q ss_pred ---------CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH----hh-hhhc
Q 025226 174 ---------FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KD-FEEL 239 (256)
Q Consensus 174 ---------~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~----~~-~~~~ 239 (256)
.||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+ |. ..++
T Consensus 542 ~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 542 YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 456777888889999999999999999999999999999999999999999999999887 55 5788
Q ss_pred CCCcccccchhHhhcc
Q 025226 240 FPEKHAYDPPEEIFGK 255 (256)
Q Consensus 240 ~p~~~~~~~li~~y~~ 255 (256)
.|+..+|++||++|++
T Consensus 622 ~P~~~~y~~lv~~l~r 637 (857)
T PLN03077 622 TPNLKHYACVVDLLGR 637 (857)
T ss_pred CCchHHHHHHHHHHHh
Confidence 9999999999999886
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.7e-37 Score=285.32 Aligned_cols=242 Identities=18% Similarity=0.171 Sum_probs=202.3
Q ss_pred cccccccCCchHHHHHHHHHhcCCC--ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccc---------
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNPS--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKL--------- 71 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~--------- 71 (256)
|+.|++.|+.+.|.++|++|.+.+. ||+++++|++.+.++.+ +.+|++|...+..|+..+++.+
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A-----~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA-----LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHH-----HHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 5567777777777777777776665 77777777777777777 7777777766666665544322
Q ss_pred --------------------------c-----------------------chhHHHHHHHhhcCCCcHHHHHHHHHHHhh
Q 025226 72 --------------------------I-----------------------GKEALFVILGLKRFKDDEEKLQKFIKTHVL 102 (256)
Q Consensus 72 --------------------------~-----------------------~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~ 102 (256)
+ ...|..+|.+|++.|+.++|+ .++++|..
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl-~lf~~M~~ 281 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGL-ELFFTMRE 281 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHH-HHHHHHHH
Confidence 1 126777888888888888887 56678888
Q ss_pred ccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 025226 103 RLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179 (256)
Q Consensus 103 ~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 179 (256)
.|+.||.. ++|.+|++.|+++.|.+++..|.+.| +.||+.+||+||.+|+++|++++|.++|++|.+ ||.++
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s 356 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVS 356 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeee
Confidence 99999877 48999999999999999999999999 899999999999999999999999999999975 89999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH----hhhhhcCCCcccccchhHhhcc
Q 025226 180 YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK----KDFEELFPEKHAYDPPEEIFGK 255 (256)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~----~~~~~~~p~~~~~~~li~~y~~ 255 (256)
||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.+ +...|+.|+..+||+||++|++
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998888 6778888999999999998875
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.71 E-value=3.1e-17 Score=98.27 Aligned_cols=50 Identities=32% Similarity=0.653 Sum_probs=28.0
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 175 p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
||+++||++|++|++.|++++|.++|++|.+.|++||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45555555555555555555555555555555555555555555555543
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.70 E-value=4.8e-17 Score=97.43 Aligned_cols=50 Identities=38% Similarity=0.711 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
||+++||++|.+|++.|++++|.++|++|++.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.57 E-value=1.1e-13 Score=118.69 Aligned_cols=135 Identities=10% Similarity=-0.001 Sum_probs=72.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 192 (256)
...+.+.|++++|...|+++.+.. ..+...+..+...|.+.|++++|.++|+++.+.+-.....+++.+..+|++.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 334445566666666666655443 233445555556666666666666666665543211113445566666666666
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhh--hhhcCCCcccccchhH
Q 025226 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD--FEELFPEKHAYDPPEE 251 (256)
Q Consensus 193 ~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~--~~~~~p~~~~~~~li~ 251 (256)
+++|.+.++++.+. .|+...+..+...+.+.|++++|.... .-...|+..+++.+++
T Consensus 265 ~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~ 323 (389)
T PRK11788 265 EAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 66666666665554 344445555666666666666665521 2223455555554444
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.53 E-value=3.2e-13 Score=115.73 Aligned_cols=223 Identities=11% Similarity=0.032 Sum_probs=166.7
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.|.+.|+.+.|.++|+++.+... ++.+...+...++...+ +..++.+....+.+... .....+..+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~~~~~~~~~~~~----~~~~~~~~l 186 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKA-----IDVAERLEKLGGDSLRV----EIAHFYCEL 186 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHH-----HHHHHHHHHhcCCcchH----HHHHHHHHH
Confidence 45677888888888888865322 66677777777777777 88887776544322110 011123344
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
...+.+.++.++|.. .++.+.+.. |+.. .+...+.+.|++++|.+.|+++.+.+ ......+++.+..+|.+.
T Consensus 187 a~~~~~~~~~~~A~~-~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 187 AQQALARGDLDAARA-LLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHhCCCHHHHHH-HHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHHHHHHHHHHHHHHc
Confidence 556788999999985 445554432 3322 47788999999999999999999765 233356789999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC---CCChHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP---HPLLRSKV 232 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~---~g~~~~a~ 232 (256)
|++++|.+.++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.++++
T Consensus 263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHH
Confidence 9999999999999885 477778899999999999999999999998876 6999999999988774 55777776
Q ss_pred H----hhhhhcCCCcc
Q 025226 233 K----KDFEELFPEKH 244 (256)
Q Consensus 233 ~----~~~~~~~p~~~ 244 (256)
. +...++.|++.
T Consensus 339 ~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCCC
Confidence 5 55567777654
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=5.4e-11 Score=111.46 Aligned_cols=117 Identities=14% Similarity=0.092 Sum_probs=48.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|.++++.+.+.+ .++...+..+...|.+.|
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK--PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC
Confidence 3344444444444444444444332 2334444444444444444444444444444332 123333444444444444
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++++|.+.|+++.+.+ |+..++..+...+.+.|++++|.+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence 4444444444444332 222333334444444444444433
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=2.5e-11 Score=100.59 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.||.++|+-..++.|.+++++-.... .+.+..+||.+|.+-.-..+ .++..+|....+.||..|||+++++.++.
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHh
Confidence 59999999999999999999988776 69999999999987665433 78999999999999999999999999999
Q ss_pred CChhH----HHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 191 GSPAD----AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 191 g~~~~----a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
|+++. |.+++.+|++.|+.|+..+|..+|..+++.++-.+
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k 330 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQK 330 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchh
Confidence 98775 56889999999999999999999999999987644
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.33 E-value=7e-11 Score=110.71 Aligned_cols=207 Identities=17% Similarity=0.122 Sum_probs=132.6
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.|.+.|+++.|.++++.+.+... |..+...+...++.+.+ +..|+.+....+.. ...+..+
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~~~~~~~~~---------~~~~~~l 641 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA-----VSSFKKLLALQPDS---------ALALLLL 641 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCCCC---------hHHHHHH
Confidence 35556677777777776654322 55555566666666666 67776665433211 1234445
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
...+.+.|+.++|+..+ +...+. .|+.. .+...+...|++++|.++++.+.+.+ ..+...+..+...+.+.
T Consensus 642 ~~~~~~~~~~~~A~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 716 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSL-KRALEL--KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--PKAALGFELEGDLYLRQ 716 (899)
T ss_pred HHHHHHcCCHHHHHHHH-HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCChHHHHHHHHHHHHC
Confidence 66677788888887444 344332 23211 46777777788888888888877775 56667777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|++++|.+.|+++...+ |+..++..+...|.+.|+.++|.+.++++.+.. +.+...+..+...|...|++++|.+
T Consensus 717 g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 717 KDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 88888877777776643 555666667777777777777777777766542 3355666666677777777777766
No 14
>PF12854 PPR_1: PPR repeat
Probab=99.32 E-value=2.2e-12 Score=70.03 Aligned_cols=32 Identities=31% Similarity=0.660 Sum_probs=20.1
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 172 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=8.5e-11 Score=97.46 Aligned_cols=169 Identities=10% Similarity=0.062 Sum_probs=128.7
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHH--HcCCHH-HHHHHHHHHHhcC------------------C
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELE--RQEETI-LAVKIFDIIRKQD------------------W 137 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~--~~~~~~-~a~~~~~~m~~~~------------------~ 137 (256)
-...+|.+++++ .++..|...|+..+-. .|++.-+ .+.++- .-.+-|=.|.+.| .
T Consensus 124 kmIS~~EvKDs~-ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 124 KMISSREVKDSC-ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHhhcccchhH-HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 345678899987 7788898888755443 3333322 222211 1111122222222 0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRI 217 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~ 217 (256)
...+..||.+||.++|+.-..+.|.+++++-.....+.+..+||.+|.+-.-. ....+..+|.+..++||..|||+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 34577899999999999999999999999999988899999999999875432 23889999999999999999999
Q ss_pred HHHHhcCCCChHHHHH--------hhhhhcCCCcccccchhHhhcc
Q 025226 218 LLKGLLPHPLLRSKVK--------KDFEELFPEKHAYDPPEEIFGK 255 (256)
Q Consensus 218 li~~~~~~g~~~~a~~--------~~~~~~~p~~~~~~~li~~y~~ 255 (256)
++.+.++.|+++.|.+ |+.-|++|...+|.-+|..|.+
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 9999999999888776 8889999999999999987754
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.23 E-value=1.6e-11 Score=66.64 Aligned_cols=33 Identities=27% Similarity=0.675 Sum_probs=31.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 136 DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 136 ~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
| +.||.+|||+||++||+.|++++|.++|++|+
T Consensus 2 G-~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 G-CEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred C-CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 5 89999999999999999999999999999995
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.98 E-value=2.2e-09 Score=88.04 Aligned_cols=210 Identities=14% Similarity=0.055 Sum_probs=76.0
Q ss_pred cccccCCchHHHHHHHH-HhcC-CC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHH
Q 025226 5 LFSRSKIPILASIVLQN-LTKN-PS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEAL 77 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~-m~~~-~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 77 (256)
.+-+.|+++.|+++++. .... +. |..+-.-....++.+.+ +..++++...+... ...+..
T Consensus 17 ~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A-----~~ay~~l~~~~~~~-~~~~~~------- 83 (280)
T PF13429_consen 17 LLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEA-----IEAYEKLLASDKAN-PQDYER------- 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccccc-cccccc-------
Confidence 45678999999999954 4333 22 44433333444556666 77777776543221 111111
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
+..+...+++++|+..+..... +.-.|... .++..+.+.++++++.++++...+......+...|..+-..+.+.|
T Consensus 84 --l~~l~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G 160 (280)
T PF13429_consen 84 --LIQLLQDGDPEEALKLAEKAYE-RDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLG 160 (280)
T ss_dssp -------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCC
T ss_pred --cccccccccccccccccccccc-cccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 2222466777777644332222 22223322 4666677777777777777776654434566677777777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+.++|.+.+++..+. .|+ ....+.++..+...|+.+++.+++....+.. ..|+..+..+..+|...|+.++|+.
T Consensus 161 ~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 161 DPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence 777777777777663 354 5666777777777777777777777666553 4455566777777777777777777
No 18
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.90 E-value=2.4e-09 Score=58.49 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 025226 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 179 t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
|||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 19
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.89 E-value=6.5e-08 Score=86.90 Aligned_cols=203 Identities=9% Similarity=-0.010 Sum_probs=137.1
Q ss_pred HHHHHHhcCCC------ccccccccCCCCCCCCcccCcccccccccccCC--CCCCccc--------------cccccch
Q 025226 17 IVLQNLTKNPS------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGR--PRGSLWR--------------GKKLIGK 74 (256)
Q Consensus 17 ~l~~~m~~~~~------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~--~~~~~~~--------------~~~~~~~ 74 (256)
+++..++..|+ |..+|.-||..|+++.+ - +|.-|.... +...+++ .......
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaa-----t-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aD 84 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAA-----T-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLAD 84 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCccc-----c-chhhhhcccccccchhHHHHHhcccccccccCCCCCchh
Confidence 45666777766 88889888888888776 3 554443222 2211111 1112245
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHh------------------------hccCCCcHHHHHHHHHHcCCHHHHHHHH-
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHV------------------------LRLLKMDIVAVLIELERQEETILAVKIF- 129 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~------------------------~~~~~~~~~~li~~~~~~~~~~~a~~~~- 129 (256)
.|..+..+|.++|+... ++..-+.+. ..+.-||..+.+.-....|.++.+.++.
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999998765 333322221 1223455544444444444444444443
Q ss_pred -----------------------------HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 025226 130 -----------------------------DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180 (256)
Q Consensus 130 -----------------------------~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 180 (256)
+..++-. -.|++.+|..++..-.-+|+++.|..++.+|++.|+..+..-|
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~-e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLV-EAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhh-cCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 2222222 2589999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
-.||-+ .++..-+..+.+.|.+.|+.|++.|+...+-.+.++|....
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~ 289 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKY 289 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhh
Confidence 888877 78888889999999999999999999988888877665443
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.86 E-value=3.5e-07 Score=83.64 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=50.8
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhH
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 195 (256)
+...|++++|...++.+.+.. ..++...+..+...+.+.|++++|...|++..+.. ..+...+..+-..|.+.|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~e 264 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSRE 264 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchh
Confidence 334444444444444443332 11222233333344444455555555555444321 1123344444445555555543
Q ss_pred ----HHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 196 ----AMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 196 ----a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|...|++..+.. ..+...+..+...+.+.|++++|+.
T Consensus 265 A~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 265 AKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred hHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455555444431 1133445555555555555555555
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.86 E-value=2.7e-07 Score=84.44 Aligned_cols=146 Identities=10% Similarity=0.036 Sum_probs=103.9
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
.+.+.|+.++|... ++.+....-.++.. .+..++.+.|++++|...|++..+.. ..+...+..+-..|...|++
T Consensus 186 ~l~~~g~~~eA~~~-~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 186 SFLNKSRLPEDHDL-ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHcCCHHHHHHH-HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCc
Confidence 35667777777643 34443332111111 24567778888999999998888775 55677888888888888888
Q ss_pred HH----HHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 159 NE----AMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 159 ~~----a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++ |...|++..+. .| +...+..+-..+.+.|++++|...+++..+... -+...+..+...|.+.|++++|..
T Consensus 263 ~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 263 REAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred hhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 85 78888887763 34 456788888888888899999988888776532 234456677788888888888887
No 22
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.81 E-value=6.5e-09 Score=56.69 Aligned_cols=35 Identities=29% Similarity=0.596 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 177 (256)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
No 23
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.79 E-value=8.8e-09 Score=55.90 Aligned_cols=33 Identities=27% Similarity=0.628 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 025226 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210 (256)
Q Consensus 178 ~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p 210 (256)
.|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666655
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.74 E-value=1.9e-07 Score=76.55 Aligned_cols=205 Identities=13% Similarity=0.034 Sum_probs=103.2
Q ss_pred ccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHH
Q 025226 8 RSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILG 82 (256)
Q Consensus 8 ~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (256)
..++.+.|.+.++.+...+. +..++.- ...++...+ +.++.........+ ..+...+..
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A-----~~~~~~~~~~~~~~----------~~l~~~l~~ 119 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEA-----LKLAEKAYERDGDP----------RYLLSALQL 119 (280)
T ss_dssp ------------------------------------------------------------------------------H-
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccc-----cccccccccccccc----------chhhHHHHH
Confidence 35667778777777765543 4444433 455556665 66665433222111 112233556
Q ss_pred hhcCCCcHHHHHHHHHHHhhcc-CCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 83 LKRFKDDEEKLQKFIKTHVLRL-LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
+.+.++.+++. .+++...... ...+.. .+-..+.+.|+.++|++.+++..+.. +-|....+.++..+...|+.
T Consensus 120 ~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~ 196 (280)
T PF13429_consen 120 YYRLGDYDEAE-ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDY 196 (280)
T ss_dssp HHHTT-HHHHH-HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHH
T ss_pred HHHHhHHHHHH-HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCh
Confidence 77888888886 4545544322 223333 35566778999999999999999885 44688899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+++.++++...+.. ..|...|..+-.+|...|+.++|..+|++..+. -+.|......+...+.+.|+.++|.+
T Consensus 197 ~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 197 DEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 99999999887753 456677889999999999999999999998764 13377888899999999999999987
No 25
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.71 E-value=2.5e-08 Score=54.05 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 025226 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175 (256)
Q Consensus 142 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (256)
+.|||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.67 E-value=2.8e-06 Score=66.65 Aligned_cols=152 Identities=15% Similarity=0.095 Sum_probs=105.9
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
+..+...+...|+.++|...+. ...... |+.. .+-..+...|++++|.+.+++..+.. ..+...+..+...
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~-~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~ 108 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLD-KALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH-HHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHH
Confidence 3344566777888888875543 333221 3222 35666777888888888888887765 4566777778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 152 LARTGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
+...|++++|.+.|++..+.... .+...+..+-..|...|++++|...|.+..+.. ..+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888764222 234566667777888888888888888877653 1235567778888888888888
Q ss_pred HHH
Q 025226 231 KVK 233 (256)
Q Consensus 231 a~~ 233 (256)
|.+
T Consensus 188 A~~ 190 (234)
T TIGR02521 188 ARA 190 (234)
T ss_pred HHH
Confidence 877
No 27
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.66 E-value=1.7e-06 Score=78.85 Aligned_cols=206 Identities=10% Similarity=-0.015 Sum_probs=112.4
Q ss_pred ccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHH
Q 025226 8 RSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILG 82 (256)
Q Consensus 8 ~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (256)
..|+++.|++.++...+... |..+-..+...++...+ +..|+......+.. ...+..+-..
T Consensus 343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA-----~~~~~~al~~~p~~---------~~~~~~lg~~ 408 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA-----EEDFDKALKLNSED---------PDIYYHRAQL 408 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHhCCCC---------HHHHHHHHHH
Confidence 35566666666665433221 22222333344444444 55555444332111 1223333445
Q ss_pred hhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
+...|+.++|+..+ +.... ..|+.. .+-..+.+.|++++|+..|++..+.. .-+...|+.+-..+...|++
T Consensus 409 ~~~~g~~~~A~~~~-~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~ 483 (615)
T TIGR00990 409 HFIKGEFAQAGKDY-QKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--PEAPDVYNYYGELLLDQNKF 483 (615)
T ss_pred HHHcCCHHHHHHHH-HHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCH
Confidence 56677777776433 33322 223322 24555666777777777777776553 44566777777777777777
Q ss_pred HHHHHHHHHHHhCCCC--C---CH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 159 NEAMQVWESMRKEDLF--P---DS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~--p---~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
++|.+.|++..+..-. + +. ..++.....|...|++++|.+++++..+.. .-+...+..+...+.+.|++++|+
T Consensus 484 ~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 484 DEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 7777777776653110 1 11 112222233334577777777777766543 123345677777788888887777
Q ss_pred H
Q 025226 233 K 233 (256)
Q Consensus 233 ~ 233 (256)
+
T Consensus 563 ~ 563 (615)
T TIGR00990 563 K 563 (615)
T ss_pred H
Confidence 7
No 28
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.66 E-value=9e-06 Score=63.74 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=116.1
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccC-CCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLL-KMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
..+...+...|+.++|...+ +......- .++.. .+-..+...|++++|.+.|++..+..........+..+-..+..
T Consensus 69 ~~la~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 147 (234)
T TIGR02521 69 LALALYYQQLGELEKAEDSF-RRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK 147 (234)
T ss_pred HHHHHHHHHcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 34456777889999998544 44433321 12222 46777888999999999999998754123345677778888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.|++++|.+.|++..+.. ..+...+..+...+.+.|++++|.+.+++..+. ..++...+..+...+...|+.++|..
T Consensus 148 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 148 AGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred cCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999988742 124567888999999999999999999998876 34466777788888888899888876
No 29
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.64 E-value=6.2e-07 Score=61.47 Aligned_cols=76 Identities=18% Similarity=0.441 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcC--------ChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDL-FPDSQTYTEVIRGFLKDG--------SPADAMNIYEDMIKSPDPPEELPFRILL 219 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g--------~~~~a~~~~~~M~~~g~~p~~~t~~~li 219 (256)
|..+...+++.....+|+.+++.|+ .|++.+||.++.+-++.. ++-+.+.+++.|...+++|+..||+++|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 4444444555555555555555555 555555555555554432 2334556666666666667777776666
Q ss_pred HHhcC
Q 025226 220 KGLLP 224 (256)
Q Consensus 220 ~~~~~ 224 (256)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66544
No 30
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.64 E-value=3.4e-08 Score=52.26 Aligned_cols=29 Identities=28% Similarity=0.618 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 179 TYTEVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 179 t~~~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 55555555555555555555555555554
No 31
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.57 E-value=5.3e-06 Score=75.62 Aligned_cols=226 Identities=13% Similarity=0.017 Sum_probs=146.6
Q ss_pred CCchHHHHHHHHHhcCC-C-------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHH
Q 025226 10 KIPILASIVLQNLTKNP-S-------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVIL 81 (256)
Q Consensus 10 ~~~~~A~~l~~~m~~~~-~-------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (256)
+..+.|.+.|+...+.+ . |+.+-..+...++...+ +..|+......+.. ...+..+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA-----~~~~~kal~l~P~~---------~~~~~~la~ 373 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA-----LADLSKSIELDPRV---------TQSYIKRAS 373 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHcCCCc---------HHHHHHHHH
Confidence 45667888888766432 1 33333333445666666 77777665443321 234455566
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
.+...|+.++|+..+.+......-.|+.. .+-..+...|++++|...|++..+.. ..+...|..+-..+.+.|++++
T Consensus 374 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--P~~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 374 MNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--PDFIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--ccCHHHHHHHHHHHHHCCCHHH
Confidence 67788999999865543333222223333 46667788999999999999998875 5567888888889999999999
Q ss_pred HHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChh------HHHHHHHHhcCCCChHHHHH
Q 025226 161 AMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL------PFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 161 a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~------t~~~li~~~~~~g~~~~a~~ 233 (256)
|...|++..+. .| +...|+.+-..|...|++++|.+.|++..+..-..+.. .++..+..+...|++++|.+
T Consensus 452 A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~ 529 (615)
T TIGR00990 452 SMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN 529 (615)
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999988763 34 46788888999999999999999999877653211111 12222223344688888888
Q ss_pred hhh--hhcCCCcc-cccchhHhh
Q 025226 234 KDF--EELFPEKH-AYDPPEEIF 253 (256)
Q Consensus 234 ~~~--~~~~p~~~-~~~~li~~y 253 (256)
... ..+.|+.. .+..+..+|
T Consensus 530 ~~~kAl~l~p~~~~a~~~la~~~ 552 (615)
T TIGR00990 530 LCEKALIIDPECDIAVATMAQLL 552 (615)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHH
Confidence 333 23445433 344454443
No 32
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.55 E-value=8e-08 Score=50.79 Aligned_cols=31 Identities=29% Similarity=0.658 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDL 173 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~ 173 (256)
+|||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999875
No 33
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.55 E-value=1.1e-06 Score=60.21 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=70.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhhHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWY-QPDAYIYKDLIIALARTG--------KMNEAMQVWESMRKEDLFPDSQTYT 181 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~y~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~t~~ 181 (256)
..|..+...+++.....+|+.+++.| + .|++.+||.++.+.++.. ++-+...+++.|...+++|+..|||
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~-i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNG-ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcC-CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 36667777799999999999999999 8 999999999999998763 4567789999999999999999999
Q ss_pred HHHHHHHHc
Q 025226 182 EVIRGFLKD 190 (256)
Q Consensus 182 ~li~~~~~~ 190 (256)
.+|..+.+.
T Consensus 109 ivl~~Llkg 117 (120)
T PF08579_consen 109 IVLGSLLKG 117 (120)
T ss_pred HHHHHHHHh
Confidence 999998763
No 34
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.42 E-value=1.9e-06 Score=73.75 Aligned_cols=115 Identities=13% Similarity=0.155 Sum_probs=101.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
.+++.+....+++.+..++...+.... ...-..|..++|..|.+.|..+++.+++..=...|+-||..|||.||+.+.+
T Consensus 71 ~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~ 150 (429)
T PF10037_consen 71 IFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLK 150 (429)
T ss_pred HHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhh
Confidence 688888888899999999999887731 2233345579999999999999999999998888999999999999999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 151 ~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 151 KGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred cccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999988888999999888888877
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.36 E-value=2.6e-05 Score=76.09 Aligned_cols=148 Identities=14% Similarity=0.094 Sum_probs=114.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
.....+...|+.++|.. +++ ...-.|... .+-..+.+.|+.++|+..|+...+.. +.++..+..+...|...|
T Consensus 578 ~~a~~l~~~G~~~eA~~-~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEA-LLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHCCCHHHHHH-HHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 34566788999999974 433 111122222 57777889999999999999999886 567889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CC---ChhHHHHHHHHhcCCCChHH
Q 025226 157 KMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD--PP---EELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~--~p---~~~t~~~li~~~~~~g~~~~ 230 (256)
+.++|.+.++...+. .|+ ..++..+-..+.+.|++++|.+++++.....- .| +...+..+.+.+...|+.++
T Consensus 652 ~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 652 DLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999987763 343 45566777888899999999999999886532 22 23456666788889999999
Q ss_pred HHH
Q 025226 231 KVK 233 (256)
Q Consensus 231 a~~ 233 (256)
|+.
T Consensus 730 A~~ 732 (1157)
T PRK11447 730 ALE 732 (1157)
T ss_pred HHH
Confidence 988
No 36
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.27 E-value=6.8e-05 Score=65.91 Aligned_cols=217 Identities=11% Similarity=0.046 Sum_probs=152.8
Q ss_pred ccccCCchHHHHHHHHH-hcCCC----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 6 FSRSKIPILASIVLQNL-TKNPS----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m-~~~~~----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
|...+++|.|..-++.. ..++- +.-+-..|-.+|.++-+ +..|++.....+.. ...+..+-
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlA-----I~~Ykral~~~P~F---------~~Ay~Nla 327 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLA-----IDTYKRALELQPNF---------PDAYNNLA 327 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHH-----HHHHHHHHhcCCCc---------hHHHhHHH
Confidence 44555666665555442 22221 44444455566777767 88887776665544 45566667
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhc-cCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLR-LLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
+++...|++.++.+ .+...... .--+|.. .|=+.+...|.+++|..+|..-.+-. .--...+|.|-..|-..|++
T Consensus 328 nALkd~G~V~ea~~-cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 328 NALKDKGSVTEAVD-CYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHhccchHHHHH-HHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccH
Confidence 88888899999974 43333321 1122222 48888889999999999999877653 44567889999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHhcCCCChHHHHH--h
Q 025226 159 NEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFRILLKGLLPHPLLRSKVK--K 234 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~--~ 234 (256)
++|...+++..+ +.|+- ..|+.+=..|-..|+++.|.+.+.+-.+.+ |. ...++.|-..|-..|.+.+|+. .
T Consensus 405 ~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999998776 66774 678888888888999999999998876653 33 2456788889999999999988 4
Q ss_pred hhhhcCCCc
Q 025226 235 DFEELFPEK 243 (256)
Q Consensus 235 ~~~~~~p~~ 243 (256)
..-.+.||.
T Consensus 481 ~aLklkPDf 489 (966)
T KOG4626|consen 481 TALKLKPDF 489 (966)
T ss_pred HHHccCCCC
Confidence 455666764
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.25 E-value=7.7e-05 Score=64.38 Aligned_cols=225 Identities=9% Similarity=-0.022 Sum_probs=126.6
Q ss_pred cCCchHHHHHHHHHhcCC---C--ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHh
Q 025226 9 SKIPILASIVLQNLTKNP---S--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGL 83 (256)
Q Consensus 9 ~~~~~~A~~l~~~m~~~~---~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~ 83 (256)
.|+.+.|.+.+..-.+.+ . |-..-.+..+.++.+.+ ...+.++.+..+... -.........+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A-----~~~l~~A~~~~~~~~--------~~~~l~~a~l~ 163 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARA-----NQHLERAAELADNDQ--------LPVEITRVRIQ 163 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHhcCCcch--------HHHHHHHHHHH
Confidence 477777777777655432 2 22222232455666666 667766654332220 01111113455
Q ss_pred hcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC-----------------------
Q 025226 84 KRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWY----------------------- 138 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~----------------------- 138 (256)
...|+.++|.. .++...+.. -.|... .+...|.+.|++++|.+++..+.+.+..
T Consensus 164 l~~g~~~~Al~-~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARH-GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888874 334444333 112222 4777788888888888888887766511
Q ss_pred -----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHH
Q 025226 139 -----------------QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 139 -----------------~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
+.++.....+..++...|+.++|.+++++..+. .||.. -.++.+.+..++.+++.+..+
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHH
Confidence 123334445566666778888888888877763 33431 112333344567777777777
Q ss_pred HHHhCCCCCCh-hHHHHHHHHhcCCCChHHHHH--hhhhhcCCCcccccchhHhh
Q 025226 202 DMIKSPDPPEE-LPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYDPPEEIF 253 (256)
Q Consensus 202 ~M~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~~li~~y 253 (256)
+..+. .|+. ..+.++-+.|.+.|++++|.+ ...-...|+..+|-.+..++
T Consensus 319 ~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~ 371 (398)
T PRK10747 319 QQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADAL 371 (398)
T ss_pred HHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 66654 2333 345566777777777777777 33344567666655555544
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.24 E-value=0.00015 Score=68.94 Aligned_cols=201 Identities=10% Similarity=0.023 Sum_probs=139.2
Q ss_pred CCchHHHHHHHHHh-cCCC-cccccccc--CCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhc
Q 025226 10 KIPILASIVLQNLT-KNPS-KNFSFLAF--KPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKR 85 (256)
Q Consensus 10 ~~~~~A~~l~~~m~-~~~~-~~~ll~a~--~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 85 (256)
+++++|...+.... ..+- ++-+..++ ...++...+ +..|+++....+.+ ..+......+.+
T Consensus 490 ~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeA-----i~~~rka~~~~p~~----------~a~~~la~all~ 554 (987)
T PRK09782 490 TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATA-----LAAWQKISLHDMSN----------EDLLAAANTAQA 554 (987)
T ss_pred CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHH-----HHHHHHHhccCCCc----------HHHHHHHHHHHH
Confidence 56777877555533 3332 33222222 356666666 77777654332211 223344556778
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIVA----VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
.|+.++|.. +++...... |+... +.......|++++|...+.+..+.. |+...|..+-..+.+.|+.++|
T Consensus 555 ~Gd~~eA~~-~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~---P~~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 555 AGNGAARDR-WLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA---PSANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred CCCHHHHHH-HHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCCHHHH
Confidence 899999874 445554433 44432 2233345599999999999988664 6788999999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 162 MQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 162 ~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
...|++..+. .|+ ...++.+-..+...|+.++|.+.|++..+... -+...+..+-..+...|++++|...
T Consensus 629 ~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~ 699 (987)
T PRK09782 629 VSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHY 699 (987)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999998874 464 45666777789999999999999998887522 2556778889999999999999883
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.21 E-value=4.3e-05 Score=64.73 Aligned_cols=197 Identities=10% Similarity=0.052 Sum_probs=147.3
Q ss_pred ccCCchHHHHHHHHHhcCCC------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHH
Q 025226 8 RSKIPILASIVLQNLTKNPS------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVIL 81 (256)
Q Consensus 8 ~~~~~~~A~~l~~~m~~~~~------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (256)
..|+.+.|.+.+.+..+.+. ||+-+ .+...++++++ +.+|-.++.-.... ......+.+
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldea-----ld~f~klh~il~nn---------~evl~qian 566 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEA-----LDCFLKLHAILLNN---------AEVLVQIAN 566 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHH-----HHHHHHHHHHHHhh---------HHHHHHHHH
Confidence 36888999999998766553 88877 34556778888 88885544221110 112233456
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
.|-...+..+|++.+ |....+.|+-- .|-..|-+.|+-.+|++.+-+--+- +.-+..|..-|-.-|....-
T Consensus 567 iye~led~aqaie~~---~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 567 IYELLEDPAQAIELL---MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHhhCHHHHHHHH---HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHHHHHHHHHHhhHH
Confidence 667777888887433 55556666433 3667777899999999998876655 56788888888889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK-DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
+++|...|++..- ++|+..-|..||..|.+ .|++++|+++++..... +.-|.....-|++.+...|.
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 9999999997543 67999999999998875 79999999999987654 66688888899999998885
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=98.21 E-value=0.00018 Score=64.85 Aligned_cols=140 Identities=12% Similarity=-0.030 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
++.++|...+ +...+ +.|+.. .+=..+...|++++|...|++..+.+ +.+...|..+-..|...|++++|.
T Consensus 318 ~~~~~A~~~~-~~Al~--ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 318 NAMIKAKEHA-IKATE--LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred hHHHHHHHHH-HHHHh--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3456676433 33333 234322 24445667899999999999998886 556778888888999999999999
Q ss_pred HHHHHHHhCCCCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCChHHHHHh
Q 025226 163 QVWESMRKEDLFPDSQ-TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
..+++..+. .|+.. .+..+...+...|++++|...+++..+.. .| +...+..+-..|...|+.++|...
T Consensus 393 ~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~ 463 (553)
T PRK12370 393 QTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKL 463 (553)
T ss_pred HHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 999998874 35432 23344445667899999999999987653 24 344466777788899999999883
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.18 E-value=3.4e-05 Score=66.56 Aligned_cols=216 Identities=13% Similarity=0.042 Sum_probs=130.4
Q ss_pred cccccCCchHHHHHHHHHhcCCC-------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEAL 77 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 77 (256)
.+-+.|+++.|.+.++.+.+... .-.. .+.+.++...+ +.++..+.+.....+. ....+....+.
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~--~~~~~gdw~~a-----~~~l~~l~k~~~~~~~-~~~~l~~~a~~ 233 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQ--AYIRTGAWSSL-----LDILPSMAKAHVGDEE-HRAMLEQQAWI 233 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH--HHHHHHhHHHH-----HHHHHHHHHcCCCCHH-HHHHHHHHHHH
Confidence 45567888888888887755432 2111 12344666666 7777777766544322 11211112222
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhc-cCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLR-LLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
.++.......+ .+.+..+++...+. .-.|... ++..++...|+.++|.+++.+..+.. ||.. -.++.+....
T Consensus 234 ~l~~~~~~~~~-~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~---~~~~--l~~l~~~l~~ 307 (398)
T PRK10747 234 GLMDQAMADQG-SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ---YDER--LVLLIPRLKT 307 (398)
T ss_pred HHHHHHHHhcC-HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCHH--HHHHHhhccC
Confidence 22222222222 23333444333211 1112222 57888888888888888888877643 4441 1123444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 156 GKMNEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
++.+++.+..++..+. .||. ..+-++=..|.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+.
T Consensus 308 ~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888887764 3544 45667777888888888999888888876 58888888888888888888888774
Q ss_pred hhhh
Q 025226 235 DFEE 238 (256)
Q Consensus 235 ~~~~ 238 (256)
-..+
T Consensus 384 ~~~~ 387 (398)
T PRK10747 384 RRDG 387 (398)
T ss_pred HHHH
Confidence 3333
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=8.6e-05 Score=60.32 Aligned_cols=212 Identities=10% Similarity=0.022 Sum_probs=140.6
Q ss_pred cCCchHHHHHHHHHhcCCC----ccccc-cccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHh
Q 025226 9 SKIPILASIVLQNLTKNPS----KNFSF-LAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGL 83 (256)
Q Consensus 9 ~~~~~~A~~l~~~m~~~~~----~~~ll-~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~ 83 (256)
+.+||.|.++|.+|.+... -+..+ +-+.+.|.++.+ +++.+.+..+...+ .-..+ -....+-..|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRA-----IRiHQ~L~~spdlT---~~qr~--lAl~qL~~Dy 117 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRA-----IRIHQTLLESPDLT---FEQRL--LALQQLGRDY 117 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHH-----HHHHHHHhcCCCCc---hHHHH--HHHHHHHHHH
Confidence 6789999999999976543 23333 334556777778 88887666443222 11111 1223345667
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCH
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDA----YIYKDLIIALARTGKM 158 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~~~~~g~~ 158 (256)
-..|-.+.|-+.|...+.+....++.. .|+..|-..++|++|.++-.++.+.++ .+.. ..|.-|-..+....++
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~-q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGG-QTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCC-ccchhHHHHHHHHHHHHHhhhhhH
Confidence 778888888655544444444555544 599999999999999999998887762 2221 1233333344456788
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 159 NEAMQVWESMRKEDLFPDSQTYTEVI-RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++|..++.+..+.+ |+.+--++++ +-+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.+++..
T Consensus 197 d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 197 DRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 88888888877642 4443333333 3455788899999999988888776667778888889999988887766
No 43
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.12 E-value=0.0004 Score=66.17 Aligned_cols=145 Identities=11% Similarity=0.036 Sum_probs=88.6
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCC-cHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKM-DIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
...|+.++|+..+ +........+ ....+-.++.+.|++++|.+.+++..+.. ..+...+..+.....+.|++++|.
T Consensus 520 ~~~Gr~eeAi~~~-rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 520 YQVEDYATALAAW-QKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHCCCHHHHHHHH-HHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 4667777776443 3332211111 11134455666777777777777776654 233333333333444557888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
..|++..+. .|+...|..+-..+.+.|+.++|...|++..+.. .-+...++.+-..+...|+.++|+..
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888777653 4677777777778888888888888888776652 12344555666677788888887773
No 44
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.12 E-value=0.00012 Score=71.64 Aligned_cols=204 Identities=11% Similarity=0.003 Sum_probs=144.1
Q ss_pred ccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
+...|+.++|++.++...+... +..+-..+...++...+ +..+++.....+..+ .......
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A-----~~~l~~al~~~P~~~---------~~~~a~a 536 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA-----DALMRRLAQQKPNDP---------EQVYAYG 536 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHcCCCCH---------HHHHHHH
Confidence 3457888999999998754332 33444556677777777 888887765433221 1111122
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV------------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l 148 (256)
..+...++.++|+.. ++........++.. .+.+.+...|+.++|.++++ . ...+...+..+
T Consensus 537 l~l~~~~~~~~Al~~-l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~--~p~~~~~~~~L 609 (1157)
T PRK11447 537 LYLSGSDRDRAALAH-LNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----Q--QPPSTRIDLTL 609 (1157)
T ss_pred HHHHhCCCHHHHHHH-HHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----h--CCCCchHHHHH
Confidence 234567888888743 34433222222221 34567888999999999987 2 25566778889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCC
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPL 227 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~ 227 (256)
-..|.+.|+.++|.+.|++..+.. +.+...+..+...|...|+.++|.+.++...+. .| +..++..+-..+...|+
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCC
Confidence 999999999999999999998852 235788999999999999999999999987754 33 34556677888889999
Q ss_pred hHHHHH
Q 025226 228 LRSKVK 233 (256)
Q Consensus 228 ~~~a~~ 233 (256)
+++|.+
T Consensus 687 ~~eA~~ 692 (1157)
T PRK11447 687 TAAAQR 692 (1157)
T ss_pred HHHHHH
Confidence 999998
No 45
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.10 E-value=4.8e-05 Score=58.62 Aligned_cols=81 Identities=14% Similarity=0.235 Sum_probs=56.7
Q ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHHHHHHH
Q 025226 111 AVLIELER-----QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART----------------GKMNEAMQVWESMR 169 (256)
Q Consensus 111 ~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~----------------g~~~~a~~~~~~m~ 169 (256)
.+|+.|.+ .|.++=....+..|.+.| +.-|..+|+.||+.+=+. .+-+-|.+++++|.
T Consensus 52 ~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg-v~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME 130 (228)
T PF06239_consen 52 EAVDIFKQRDVRRRGHVEFIYAALKKMDEFG-VEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQME 130 (228)
T ss_pred HHHHHHHhcCCCCcChHHHHHHHHHHHHHcC-CcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHH
Confidence 47777764 367788888888888888 888888888888887652 23455666666666
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCC
Q 025226 170 KEDLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 170 ~~g~~p~~~t~~~li~~~~~~g~ 192 (256)
..|+.||..|+..|++.+++.+.
T Consensus 131 ~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 131 NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666655554
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=98.09 E-value=0.00047 Score=62.18 Aligned_cols=161 Identities=10% Similarity=-0.055 Sum_probs=107.1
Q ss_pred cccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHH
Q 025226 50 ILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILA 125 (256)
Q Consensus 50 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a 125 (256)
+..+++.....+.. ...+..+-..+...|+.++|...+ +...+. .|+.. .+-..+...|++++|
T Consensus 324 ~~~~~~Al~ldP~~---------~~a~~~lg~~~~~~g~~~~A~~~~-~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 324 KEHAIKATELDHNN---------PQALGLLGLINTIHSEYIVGSLLF-KQANLL--SPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHHHHHhcCCCC---------HHHHHHHHHHHHHccCHHHHHHHH-HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66666555443322 222333344566789999998555 444333 34432 366678889999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
...+++..+.. +.+...+..+...+...|++++|...+++..+.. .|+ ...+..+-..|...|+.++|.+.+.++.
T Consensus 392 i~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 392 LQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIS 468 (553)
T ss_pred HHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 99999998876 2233344445556777899999999999987643 244 4446677778889999999999999876
Q ss_pred hCCCCCChh-HHHHHHHHhcCCCC
Q 025226 205 KSPDPPEEL-PFRILLKGLLPHPL 227 (256)
Q Consensus 205 ~~g~~p~~~-t~~~li~~~~~~g~ 227 (256)
.. .|+.. -.+.+...|+..|+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 469 TQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred hc--cchhHHHHHHHHHHHhccHH
Confidence 55 34433 34455556777774
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.08 E-value=9.4e-05 Score=64.11 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---hHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYI---YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ---TYTEVI 184 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~li 184 (256)
.+...+...|+.++|.+++++..+.. ||... ...........++.+++.+.+++..+. .|+.. ...++=
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg 342 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALG 342 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHH
Confidence 47788889999999999999988774 33321 122222223457888888888887764 35544 445777
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhh
Q 025226 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238 (256)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 238 (256)
..|.+.|++++|.+.|+.-......|+...+..+...+.+.|+.++|.+...++
T Consensus 343 ~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 343 QLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 788899999999999996555555789999999999999999999888744443
No 48
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.06 E-value=0.0001 Score=64.84 Aligned_cols=156 Identities=14% Similarity=0.136 Sum_probs=102.7
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+=+-|...+.++.|+..+.+.. ...|+.. .+--.|...|+++.|+..|++..+.. .--...||.|-.++-
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl---~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRAL---NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALK 331 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHH---hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHH
Confidence 33344445555555554333322 2333322 13334567788888888888877664 334568888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHhcCCCChHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~~li~~~~~~g~~~~a 231 (256)
..|++.+|++.+++.... .|+ ....+.|-..|..-|++++|..+|..-.+- .|. ...+|.|-..|-+.|++++|
T Consensus 332 d~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred hccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHH
Confidence 888888888888887763 344 356777888888888888888888876654 222 34567777788888888888
Q ss_pred HH--hhhhhcCCC
Q 025226 232 VK--KDFEELFPE 242 (256)
Q Consensus 232 ~~--~~~~~~~p~ 242 (256)
+. .+.-.|.|.
T Consensus 408 i~~YkealrI~P~ 420 (966)
T KOG4626|consen 408 IMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHHhcCch
Confidence 77 455556654
No 49
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00025 Score=60.60 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=97.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
+|++.+...++++.|.++|+++.+.. |++ .-.+...+...++-.+|.+++++..+. .+-|....+.-.+.|.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~---pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD---PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC---CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 48888888999999999999999774 554 445888888899999999999988864 223667777777788899
Q ss_pred CChhHHHHHHHHHHhCCCCCChh-HHHHHHHHhcCCCChHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEEL-PFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~ 233 (256)
++.+.|..+.+++.+. .|+.. +|..|..+|.+.|++++|+.
T Consensus 248 ~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 248 KKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred CCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999998876 56655 99999999999999999987
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.06 E-value=3.9e-06 Score=75.90 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=62.3
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 128 ~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
++..+...| +.|+.+||..+|.-||..|+.+.|- +|.-|+-.....+...|+.++.+...+++.+.+.
T Consensus 12 fla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 12 FLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred HHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 455666666 6777777777777777777777777 7777766666666677777777777777665554
Q ss_pred CCCChhHHHHHHHHhcCCCChHH
Q 025226 208 DPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 208 ~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
.|...||..|+.+|..+|++.-
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH
Confidence 5667777777777777776553
No 51
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.05 E-value=0.00015 Score=60.30 Aligned_cols=184 Identities=16% Similarity=0.106 Sum_probs=106.9
Q ss_pred ccccccccCCchHHHHHHHHHhcCCC-------------ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccc
Q 025226 2 ATRLFSRSKIPILASIVLQNLTKNPS-------------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRG 68 (256)
Q Consensus 2 ~i~~~~~~~~~~~A~~l~~~m~~~~~-------------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~ 68 (256)
|.+.|-+.|..+....++.+|.+.+. |+.++.=+...+..++- ....+...... +.
T Consensus 193 a~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL-----~~~W~~~pr~l-r~----- 261 (400)
T COG3071 193 ALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL-----KTWWKNQPRKL-RN----- 261 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH-----HHHHHhccHHh-hc-----
Confidence 45667778888888888888888775 44444333333322221 11121111111 00
Q ss_pred ccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 025226 69 KKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148 (256)
Q Consensus 69 ~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l 148 (256)
...-....+.-+.+.|+.++|. .+..+..++...|...+++ .+.+-++.+.=.+..+...+.. +-++..+-+|
T Consensus 262 ---~p~l~~~~a~~li~l~~~~~A~-~~i~~~Lk~~~D~~L~~~~-~~l~~~d~~~l~k~~e~~l~~h--~~~p~L~~tL 334 (400)
T COG3071 262 ---DPELVVAYAERLIRLGDHDEAQ-EIIEDALKRQWDPRLCRLI-PRLRPGDPEPLIKAAEKWLKQH--PEDPLLLSTL 334 (400)
T ss_pred ---ChhHHHHHHHHHHHcCChHHHH-HHHHHHHHhccChhHHHHH-hhcCCCCchHHHHHHHHHHHhC--CCChhHHHHH
Confidence 0112223355666777777776 4445566666666533333 3344555555555555444443 2233667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
=..|.+.+.+.+|.+.|+.-.+ ..|+..+|+-+-.+|.+.|++++|.+++++-..
T Consensus 335 G~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 335 GRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777778888888888875444 457788888888888888888888777776553
No 52
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.99 E-value=7.1e-05 Score=64.22 Aligned_cols=110 Identities=14% Similarity=0.203 Sum_probs=93.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHH
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~ 215 (256)
...+......+++.+....+++++..++.+.... ....-..|.+++|+.|.+.|..+++++++..=..-|+=||..||
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 4678889999999999999999999999999875 33334456689999999999999999999998999999999999
Q ss_pred HHHHHHhcCCCChHHHHH----hhhhhcCCCccccc
Q 025226 216 RILLKGLLPHPLLRSKVK----KDFEELFPEKHAYD 247 (256)
Q Consensus 216 ~~li~~~~~~g~~~~a~~----~~~~~~~p~~~~~~ 247 (256)
|.|++.+.+.|++..|++ |...+...++.|+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 999999999999999998 44455555555554
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.94 E-value=0.00066 Score=56.63 Aligned_cols=149 Identities=15% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
...|.+.|++.+.+ .+...+.+.++-.+.. .+++-....+..+.-...+++..+. .+.++..-.+++
T Consensus 194 ~r~y~~~g~~~~ll-~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a 270 (400)
T COG3071 194 LRAYIRLGAWQALL-AILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK--LRNDPELVVAYA 270 (400)
T ss_pred HHHHHHhccHHHHH-HHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH--hhcChhHHHHHH
Confidence 45556666666654 3445555555443332 1223322223333323333333333 244455555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC------------------------------HhhHHHHHHHHHHcCChhHHHHH
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPD------------------------------SQTYTEVIRGFLKDGSPADAMNI 199 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~------------------------------~~t~~~li~~~~~~g~~~~a~~~ 199 (256)
.-+..+|+.++|.++.++-.+++..|+ .-.+.+|=.-|.+.+.+.+|.+.
T Consensus 271 ~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 271 ERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred HHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 666666666666666655554443333 23456666667778888888888
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 200 ~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|+.-. ..+|+..+|+.+-+.+.+.|+..+|-+
T Consensus 351 leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~ 382 (400)
T COG3071 351 LEAAL--KLRPSASDYAELADALDQLGEPEEAEQ 382 (400)
T ss_pred HHHHH--hcCCChhhHHHHHHHHHHcCChHHHHH
Confidence 87433 346788888888888888887777665
No 54
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.93 E-value=8.2e-05 Score=57.36 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc----------------CChhHHHH
Q 025226 140 PDAYIYKDLIIALA-----RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD----------------GSPADAMN 198 (256)
Q Consensus 140 p~~~~y~~li~~~~-----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----------------g~~~~a~~ 198 (256)
.|-.+|..+|..|. +.|.++=....+..|.+-|+.-|..+|+.||+.+=+. .+-+-|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 46666666666665 3488999999999999999999999999999986552 23566999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 199 IYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 199 ~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
+++.|...|+.||..|+..|++.+++.+.-
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 999999999999999999999999998843
No 55
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.93 E-value=0.0023 Score=53.01 Aligned_cols=120 Identities=17% Similarity=0.060 Sum_probs=58.3
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~ 159 (256)
..+.+.|+.++|...+.+......-.|+.. .+=..+...|++++|.+.|+...+.. .-+..+|..+-..+...|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHH
Confidence 345556666666544432222111111111 24445556666666666666666543 234455555666666666666
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+|.+.|++..+. .|+..........+...++.++|.+.|.+..
T Consensus 150 eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 150 LAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 666666665552 2433211111111223455666666665433
No 56
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.91 E-value=0.0016 Score=61.07 Aligned_cols=160 Identities=11% Similarity=-0.028 Sum_probs=111.7
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccC-CCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcC
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLL-KMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQP--DAYIYKDLIIALARTG 156 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~~~g 156 (256)
.+...++.++|+..+ +.+.+.+- .|+.. .+-.++...|++++|+..|++..+.....+ ....+..+..++...|
T Consensus 246 ~Ll~~g~~~eA~~~~-~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 246 ALLARDRYKDVISEY-QRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHHhhhHHHHHHHH-HHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 345668888888555 55655542 25432 356678889999999999999876541111 1355677777889999
Q ss_pred CHHHHHHHHHHHHhCC-----------CCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 157 KMNEAMQVWESMRKED-----------LFPD---SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g-----------~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
++++|.++++++.+.. -.|+ ...+..+...+...|+.++|.++++++... -+-+...+..+...+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 9999999999988642 1123 124456777888899999999999998765 233456777888888
Q ss_pred cCCCChHHHHHh--hhhhcCCCc
Q 025226 223 LPHPLLRSKVKK--DFEELFPEK 243 (256)
Q Consensus 223 ~~~g~~~~a~~~--~~~~~~p~~ 243 (256)
...|+.++|.+. ....+.||.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~ 426 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRN 426 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCC
Confidence 889999888883 334445664
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.88 E-value=0.0012 Score=57.32 Aligned_cols=158 Identities=15% Similarity=0.023 Sum_probs=101.3
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcH--H-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDI--V-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
..-..+.+.|+.+++.. ++....+..-.+.. . +.-..+...|++++|.+.++.+.+.. +-+...+..+...|..
T Consensus 123 laA~aa~~~g~~~~A~~-~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~ 199 (409)
T TIGR00540 123 KAAEAAQQRGDEARANQ-HLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIR 199 (409)
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 33456677888888864 44444332222222 1 35667778999999999999999886 4567788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HHcCChhHHHHHHHHHHhCCC---CCChhHHHHHHHHhcCCCCh
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF---LKDGSPADAMNIYEDMIKSPD---PPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~---~~~g~~~~a~~~~~~M~~~g~---~p~~~t~~~li~~~~~~g~~ 228 (256)
.|++++|.+++.++.+.+..++...-..-..++ ...+..+++.+.+..+.+... +.+...+-.+...+...|+.
T Consensus 200 ~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~ 279 (409)
T TIGR00540 200 SGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDH 279 (409)
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCCh
Confidence 999999999999999876543222211111211 222333333445555444321 23677778888888888888
Q ss_pred HHHHHhhhhh
Q 025226 229 RSKVKKDFEE 238 (256)
Q Consensus 229 ~~a~~~~~~~ 238 (256)
++|.+...+.
T Consensus 280 ~~A~~~l~~~ 289 (409)
T TIGR00540 280 DSAQEIIFDG 289 (409)
T ss_pred HHHHHHHHHH
Confidence 8888844333
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=0.00057 Score=55.69 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=127.5
Q ss_pred cccccCCchHHHHHHHHHhcCCC--cc-------ccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchh
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS--KN-------FSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKE 75 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~--~~-------~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~ 75 (256)
.|-+.|..|.|+.+-+.+.+++. ++ -+-.-|-..|-++.+ ..+|..+.+.+... ...
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA-----E~~f~~L~de~efa---------~~A 143 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA-----EDIFNQLVDEGEFA---------EGA 143 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH-----HHHHHHHhcchhhh---------HHH
Confidence 46678999999999999887765 11 122233445666667 88888777644322 233
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHH-------HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE-------LERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~-------~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l 148 (256)
.-.++..|-...++++|++.- ....+.+-.+...-+-.. .....+++.|...+..-.+.. +..+..--.+
T Consensus 144 lqqLl~IYQ~treW~KAId~A-~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~l 220 (389)
T COG2956 144 LQQLLNIYQATREWEKAIDVA-ERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIIL 220 (389)
T ss_pred HHHHHHHHHHhhHHHHHHHHH-HHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhh
Confidence 345678888999999998544 445555544544433333 334567888998888877665 3333333344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
=+.+...|++++|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+.
T Consensus 221 G~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 221 GRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred hHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 4566788999999999999888654444567788999999999999999999888765
No 59
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.85 E-value=0.00098 Score=48.03 Aligned_cols=102 Identities=19% Similarity=0.211 Sum_probs=80.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+...+...|+.++|.+.|+...+.+ ..+...|..+-..|.+.|++++|...|++..+.+ ..+...|..+-..|...
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYD--PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 36667778899999999999988876 5688888889999999999999999999877653 33566677777788889
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRI 217 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~ 217 (256)
|+.++|...|++..+. .|+...+..
T Consensus 99 g~~~~A~~~~~~al~~--~p~~~~~~~ 123 (135)
T TIGR02552 99 GEPESALKALDLAIEI--CGENPEYSE 123 (135)
T ss_pred CCHHHHHHHHHHHHHh--ccccchHHH
Confidence 9999999999887775 355555443
No 60
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.84 E-value=0.00024 Score=58.44 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=76.4
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cC
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIVA-VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR----TG 156 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~----~g 156 (256)
.+...|+.++|+..+ ..+-.+...+ .+..+.+.++++.|.+.++.|++.. .| .+-..+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l-----~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLL-----HKGGSLELLALAVQILLKMNRPDLAEKELKNMQQID---ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCC-----TTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHH-----HccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc-HHHHHHHHHHHHHHhCch
Confidence 445566666666322 1222223332 5677777777777777777777554 23 333334444433 34
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+..- -+..|...++.+....|+-
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-T
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCC
Confidence 577777777776553 456677777777777777777777777777554432 2344555566666666655
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.82 E-value=0.0028 Score=59.45 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=122.4
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCC-CcHH--HHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHH
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLK-MDIV--AVLIELERQEETILAVKIFDIIRKQD----WYQPDAYIYKDLIIA 151 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~----~~~p~~~~y~~li~~ 151 (256)
.+.++...++..++++.+ +.+...+.+ |+.. ++-++|...+++++|+.+|....... ...++......|.-+
T Consensus 298 rl~aL~~r~r~~~vi~~y-~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA 376 (822)
T PRK14574 298 RLGALLVRHQTADLIKEY-EAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS 376 (822)
T ss_pred HHHHHHHhhhHHHHHHHH-HHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence 367788899999998655 677777754 6655 69999999999999999999986542 023455557889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCC-------------CCCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 025226 152 LARTGKMNEAMQVWESMRKED-------------LFPDSQT-YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRI 217 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~ 217 (256)
|...+++++|..+++++.+.. -.||-.. +..++..+...|++.+|++.++++... -+-|......
T Consensus 377 ~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~ 455 (822)
T PRK14574 377 LNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIA 455 (822)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 999999999999999998731 1122222 345677788899999999999999765 2447777888
Q ss_pred HHHHhcCCCChHHHHHh--hhhhcCCC
Q 025226 218 LLKGLLPHPLLRSKVKK--DFEELFPE 242 (256)
Q Consensus 218 li~~~~~~g~~~~a~~~--~~~~~~p~ 242 (256)
+-+.+...|..++|.+. ....+.|+
T Consensus 456 ~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 456 LASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 88899999999988883 33344555
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.81 E-value=0.0041 Score=49.41 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=107.4
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcH----HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDI----VAVLIELERQEETILAVKIFDIIRKQDWYQPDA-YIYKDLI 149 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~y~~li 149 (256)
........+.+.|+.++|...+.+......-.|.. ..+-.++...|++++|...++++.+..+-.|.. .++..+-
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g 114 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRG 114 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHH
Confidence 44455667888999999986554333322222211 136678889999999999999998775112221 1344444
Q ss_pred HHHHhc--------CCHHHHHHHHHHHHhCCCCCCHh-hHH-----------------HHHHHHHHcCChhHHHHHHHHH
Q 025226 150 IALART--------GKMNEAMQVWESMRKEDLFPDSQ-TYT-----------------EVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 150 ~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-t~~-----------------~li~~~~~~g~~~~a~~~~~~M 203 (256)
.++... |+.++|.+.|++..+. .|+.. .+. .+-..|.+.|++++|...+.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a 192 (235)
T TIGR03302 115 LSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV 192 (235)
T ss_pred HHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 444443 7899999999998874 34432 211 3345677889999999999998
Q ss_pred HhCC--CCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 204 IKSP--DPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 204 ~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.+.. -......+..+...+.+.|++++|..
T Consensus 193 l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~ 224 (235)
T TIGR03302 193 VENYPDTPATEEALARLVEAYLKLGLKDLAQD 224 (235)
T ss_pred HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8662 22345688899999999999999988
No 63
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.80 E-value=0.0025 Score=54.50 Aligned_cols=120 Identities=13% Similarity=0.139 Sum_probs=98.1
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
.++..+...++.+.|+ .+++.+.+.. |+.. .+.+.+...++-.+|.++.++..+.. +-|......-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai-~lle~L~~~~--pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAI-ELLEKLRERD--PEVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHH-HHHHHHHhcC--CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcC
Confidence 3455566678899988 4556666555 7766 46777777888899999999988774 567788888888899999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+.+.|.++.+++.+ +.|+. .+|..|...|.+.|+++.|+-.++.+.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999887 45765 599999999999999999999999876
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.79 E-value=0.0027 Score=59.56 Aligned_cols=155 Identities=12% Similarity=0.092 Sum_probs=94.9
Q ss_pred hhcCCCcHHHHHHHHHHHhhccCC-CcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 83 LKRFKDDEEKLQKFIKTHVLRLLK-MDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
..+.|+..+|++.+.+........ |.+..++..+...|+.++|+..+++..... .........+...|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 367888888876554433322222 123356777777788888888888777221 33344444445677777888888
Q ss_pred HHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhh
Q 025226 162 MQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEE 238 (256)
Q Consensus 162 ~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~ 238 (256)
.++|+++.+.. | |...+..++..|.+.++.++|++.+++.... .|+...+-.++..+...++..+|++ ...-.
T Consensus 122 iely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 88888887742 3 2455567777788888888888888887766 4555555444333333444444655 23333
Q ss_pred cCCCc
Q 025226 239 LFPEK 243 (256)
Q Consensus 239 ~~p~~ 243 (256)
..|+.
T Consensus 198 ~~P~n 202 (822)
T PRK14574 198 LAPTS 202 (822)
T ss_pred hCCCC
Confidence 44543
No 65
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.77 E-value=0.0021 Score=47.23 Aligned_cols=100 Identities=12% Similarity=-0.018 Sum_probs=82.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
..-..+...|++++|...|+...... ..+...|..+-..+...|++++|...|++....+ ..+...+..+-.++.+.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 45566778999999999999998886 6788899999999999999999999999988742 23678888888889999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPF 215 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~ 215 (256)
|+.++|...|++-.+. .|+...|
T Consensus 106 g~~~eAi~~~~~Al~~--~p~~~~~ 128 (144)
T PRK15359 106 GEPGLAREAFQTAIKM--SYADASW 128 (144)
T ss_pred CCHHHHHHHHHHHHHh--CCCChHH
Confidence 9999999999988765 3444333
No 66
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.77 E-value=0.00032 Score=57.73 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=86.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cC
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----DG 191 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g 191 (256)
+...|++++|+++++.- .+....-..+..|.+.+++|.|.+.++.|++. ..| .+-..|..++.. .+
T Consensus 112 ~~~~~~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCch
Confidence 34568899888887642 35677777888899999999999999998874 234 444445555554 33
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhhcCCCcccccchhH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPPEE 251 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~p~~~~~~~li~ 251 (256)
++++|..+|+++.+. ..+++.+.|.+..+....|++++|.+.....+.-|+.-.+++++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 688999999997665 56788888889999999999999888544445444444445444
No 67
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.00034 Score=61.81 Aligned_cols=206 Identities=13% Similarity=0.009 Sum_probs=125.2
Q ss_pred HHHHHHHHhcCCC-ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHH
Q 025226 15 ASIVLQNLTKNPS-KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKL 93 (256)
Q Consensus 15 A~~l~~~m~~~~~-~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~ 93 (256)
|.+|++..+.++- |..+=..|+-+++.+.+ ++.|++...-.+.. ...++-+=+.+......++|.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~A-----ik~f~RAiQldp~f---------aYayTLlGhE~~~~ee~d~a~ 475 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTA-----IKCFKRAIQLDPRF---------AYAYTLLGHESIATEEFDKAM 475 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHH-----HHHHHHhhccCCcc---------chhhhhcCChhhhhHHHHhHH
Confidence 4445555544443 66666666666666666 77776554333222 111111112223333444443
Q ss_pred HHHHHHHhhccCCCcHH-H---HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 94 QKFIKTHVLRLLKMDIV-A---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~-~---li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
..| +.. -++-|..+ + +--.|.|.++++.|+-.|+...+.+ .-+.+.-..+-..+-+.|+.|+|.++|++..
T Consensus 476 ~~f-r~A--l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 476 KSF-RKA--LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHH-Hhh--hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 222 111 23334443 2 6666778889999999999888776 5677777777778888899999999999887
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHhcCCCChHHHHH--hhhhhcCCC
Q 025226 170 KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFRILLKGLLPHPLLRSKVK--KDFEELFPE 242 (256)
Q Consensus 170 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~ 242 (256)
...-+ |..+--.-...+...++.++|+..++++++. .|+ ...|-.+-+.|-+.|..+.|+. -...++.|-
T Consensus 551 ~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 551 HLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred hcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 64332 3333233344455578889999999998876 444 4455667778888888888877 333444443
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.74 E-value=0.0043 Score=58.24 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=111.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhh-ccCCCc-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVL-RLLKMD-IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
+......|+.++|+..+ ..... ...... ...+-.++.+.|++++|.++|++..+.. +.+...+..+...+...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~-~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVY-NRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 34456889999998444 44443 222111 1257778889999999999999988774 5567778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+++|...+++..+. .|+...+..+-..+...|+.++|...+++..+.... +...+..+...+...|..++|++
T Consensus 99 ~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 99 YDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence 99999999999875 354333888888899999999999999999887322 33444567777778888887776
No 69
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.0011 Score=43.32 Aligned_cols=92 Identities=20% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+...+...|++++|...+++..+.. ..+...+..+...+...|++++|.+.|++..+.. ..+..++..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 4455667788888888888887664 4455677778888888888888888888876643 223357777778888888
Q ss_pred ChhHHHHHHHHHHhC
Q 025226 192 SPADAMNIYEDMIKS 206 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~ 206 (256)
+.++|...+.+..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776543
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.65 E-value=0.0024 Score=56.65 Aligned_cols=215 Identities=12% Similarity=0.075 Sum_probs=140.1
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.+.+.|+.++|...+..+.+.+. |..+..+..-...+..........+|.++...-++......-
T Consensus 47 ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl---------- 116 (517)
T PF12569_consen 47 LLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRL---------- 116 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHh----------
Confidence 35567888888888888766554 555554442222212212222366776665554443222211
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHHH-HHHHHHHcCCHHHHHHHHHHHHhc----CC---------CCCCHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA-VLIELERQEETILAVKIFDIIRKQ----DW---------YQPDAYIY 145 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~----~~---------~~p~~~~y 145 (256)
.-.+.....+...++.++..+..+|+ |+..+ |-..|.......-..+++...... +. -.|++..|
T Consensus 117 ~L~~~~g~~F~~~~~~yl~~~l~Kgv-PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw 195 (517)
T PF12569_consen 117 PLDFLEGDEFKERLDEYLRPQLRKGV-PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW 195 (517)
T ss_pred hcccCCHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 12233345566677788888888887 66665 444444444555555666555422 11 23555555
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 146 K--DLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 146 ~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
. -+-..|-..|++++|.+..++..+. .|+ +..|..--+-|-+.|++++|.+.++.-++... -|...=+-....+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHH
Confidence 4 4456677899999999999988875 476 56677778888899999999999998886632 2667777888889
Q ss_pred cCCCChHHHHH
Q 025226 223 LPHPLLRSKVK 233 (256)
Q Consensus 223 ~~~g~~~~a~~ 233 (256)
.++|++++|.+
T Consensus 273 LRa~~~e~A~~ 283 (517)
T PF12569_consen 273 LRAGRIEEAEK 283 (517)
T ss_pred HHCCCHHHHHH
Confidence 99999999988
No 71
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.64 E-value=0.0021 Score=46.29 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=86.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 128 ~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
.++...+.. ..+......+...+...|++++|.+.|++....+ ..+...|..+-..|.+.|++++|..++++..+.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555443 3345667777888899999999999999987753 2367788888889999999999999999887764
Q ss_pred CCCChhHHHHHHHHhcCCCChHHHHHhhh--hhcCCCcccc
Q 025226 208 DPPEELPFRILLKGLLPHPLLRSKVKKDF--EELFPEKHAY 246 (256)
Q Consensus 208 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~--~~~~p~~~~~ 246 (256)
..+..++..+-..|...|++++|++... ....|+...+
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 4456777778889999999999988333 3344555443
No 72
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.62 E-value=0.0087 Score=46.45 Aligned_cols=110 Identities=6% Similarity=0.095 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHH-HHHcCC--hh
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRG-FLKDGS--PA 194 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~-~~~~g~--~~ 194 (256)
.++.+++...+....+.. ..|...|..+-..|...|++++|...|++..+.. | |...+..+-.+ |...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 444455555555544443 4455555555555555555555555555555422 3 33444444433 234444 35
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 195 ~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+|.+++++..+.... +...+..+-..+.+.|++++|+.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHH
Confidence 555555555544221 33444555555555555555555
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.60 E-value=0.017 Score=47.79 Aligned_cols=142 Identities=15% Similarity=0.042 Sum_probs=93.7
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
+..+.++..+.+........|+.. .+=..+.+.|+.++|...|++..+.. ..+...|+.+-..|...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR--PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHH
Confidence 344555545544343334444432 23345677888888888888888775 55678888888888888888888
Q ss_pred HHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 162 MQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 162 ~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
.+.|++..+. .|+ ...|..+-..+...|++++|.+.|++-.+. .|+..........+...++.++|...
T Consensus 118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~ 187 (296)
T PRK11189 118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKEN 187 (296)
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHH
Confidence 8888888763 354 566777777778888888888888887765 34332222222223345677777773
No 74
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0079 Score=47.95 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=60.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR----TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 188 (256)
+..+.+..+++-|.+-.++|.+-. +..|.+.|-.+|.+ .+.+.+|.-+|++|.++ ..|+..+-|-...++.
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~id----ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQID----EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 333445556666666666666443 45555545444443 34566666666666543 3466666666666666
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHH
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a 231 (256)
..|++++|..++++.....-+ ++.|...+|-+-...|.-.+.
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 666666666666666544211 233444444444444443333
No 75
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.52 E-value=0.0019 Score=46.09 Aligned_cols=84 Identities=21% Similarity=0.340 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---------------hCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMR---------------KEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
|..++.++|-++++.|+++....+.+..= ...+.||..+..+++.+|+..|++..|+++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 34566677777777777777766665431 124568888888888888888888888888888765
Q ss_pred C-CCCCChhHHHHHHHHhcC
Q 025226 206 S-PDPPEELPFRILLKGLLP 224 (256)
Q Consensus 206 ~-g~~p~~~t~~~li~~~~~ 224 (256)
. ++..+..+|..|++=+..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHH
Confidence 4 777778888888774443
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.50 E-value=0.0072 Score=46.90 Aligned_cols=104 Identities=10% Similarity=0.112 Sum_probs=83.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCC--HHHHHHHHHHHHhCCCCC-CHhhHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA-LARTGK--MNEAMQVWESMRKEDLFP-DSQTYTEVIRGF 187 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~-~~~~g~--~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~ 187 (256)
+-..|...|++++|...|+...+.. .-+...+..+-.+ |...|+ .++|.+++++..+.+ | +...+..+-..+
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d--P~~~~al~~LA~~~ 154 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD--ANEVTALMLLASDA 154 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC--CCChhHHHHHHHHH
Confidence 5667889999999999999999886 5577888888776 467777 599999999998853 4 567888888889
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 188 ~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
.+.|++++|...|+++.+.. .|+..-+. +|++
T Consensus 155 ~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~-~i~~ 186 (198)
T PRK10370 155 FMQADYAQAIELWQKVLDLN-SPRVNRTQ-LVES 186 (198)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCccHHH-HHHH
Confidence 99999999999999998773 44544444 3354
No 77
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.50 E-value=0.0071 Score=51.74 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=115.7
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
.+-..|+.++|++.|++.. ++-.+.. .+-+.|-...+..+|.+++-+..+. +.-|+....-|-..|-+.|+
T Consensus 533 t~e~~~~ldeald~f~klh---~il~nn~evl~qianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegd 607 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLH---AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGD 607 (840)
T ss_pred cHHHhcCHHHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccc
Confidence 3456788888887665432 2212222 3556677777888888888776655 56778888889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc-CCCChHHHHH--h
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL-PHPLLRSKVK--K 234 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~-~~g~~~~a~~--~ 234 (256)
-..|.+.+-+--+ =++-|..|..-|-.-|....-+++|..+|++.. =++|+..-|..||..|. +.|.+.+|++ .
T Consensus 608 ksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk 684 (840)
T KOG2003|consen 608 KSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYK 684 (840)
T ss_pred hhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9988887665322 244477777778888888888899999998744 45899999998887655 7899999998 3
Q ss_pred hhhhcCC-CcccccchhHhhc
Q 025226 235 DFEELFP-EKHAYDPPEEIFG 254 (256)
Q Consensus 235 ~~~~~~p-~~~~~~~li~~y~ 254 (256)
..++-.| |.....-|+.+.|
T Consensus 685 ~~hrkfpedldclkflvri~~ 705 (840)
T KOG2003|consen 685 DIHRKFPEDLDCLKFLVRIAG 705 (840)
T ss_pred HHHHhCccchHHHHHHHHHhc
Confidence 3333344 4445555665554
No 78
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.0014 Score=53.74 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=98.2
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhc-cCCCcHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLR-LLKMDIVA--VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
.|...+...-+.+..+.|-..| ....+. .+..+++. ..--+...++.+.|..||+...+. +..+...|..-|+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF-~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVF-KRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Confidence 4666677777777777776544 444433 33445441 222344457778899999988877 57788889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDS----QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
+.+.|+.+.|..+|++.... + |.. ..|...|+-=.+.|+++.+..+.+++.+. .|+..+...+++-|.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l-~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-L-PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-S-SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT-
T ss_pred HHHhCcHHHHHHHHHHHHHh-c-CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHhh
Confidence 99999999999999988765 3 333 48999999999999999999999988875 555566666666654
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.49 E-value=0.0075 Score=42.01 Aligned_cols=96 Identities=14% Similarity=0.034 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWY-QPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGF 187 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~ 187 (256)
.+...+.+.|++++|.+.|+.+.+..+- ......+..+...+.+.|++++|.+.|++..... -......+..+-..+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 4566677788888888888888765311 1113456667888888888888888888877632 111234566677777
Q ss_pred HHcCChhHHHHHHHHHHhC
Q 025226 188 LKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 188 ~~~g~~~~a~~~~~~M~~~ 206 (256)
.+.|+.++|...+++..+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 8888888888888888776
No 80
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.017 Score=45.87 Aligned_cols=121 Identities=15% Similarity=0.042 Sum_probs=98.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
......+.|++..|...|.+...-. .+|..+||.+=-+|.+.|++++|..-|.+..+.-. -+...+|.|--.|.-.|
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~--p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~g 182 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLA--PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccC--CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcC
Confidence 5566678899999999999999886 89999999999999999999999999999888422 13455677777777789
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhh
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDF 236 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 236 (256)
+.++|..++.+-...+.. |...-..+.......|++++|-....
T Consensus 183 d~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 183 DLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred CHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 999999999998877544 44555567778888999999887433
No 81
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0051 Score=52.64 Aligned_cols=147 Identities=16% Similarity=0.048 Sum_probs=113.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AV-LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
+=|+-.++.++|+ .+++...+-+-+.... || =+-|....+...|.+-+....+.. +.|-..|=.|=.+|.-.+..
T Consensus 338 NYYSlr~eHEKAv-~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 338 NYYSLRSEHEKAV-MYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred hHHHHHHhHHHHH-HHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHHHHhhhhHHHHHhcch
Confidence 3445567778887 4555554433221111 54 466888888999999999888885 78888999999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 159 NEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.-|.-.|++..+ ++| |...|.+|=..|.+.++.++|...|.+-...|=. +...+..|-+.|-+.++..+|..
T Consensus 415 ~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 415 FYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHH
Confidence 999999988766 445 7889999999999999999999999988776533 56788888899999999888887
No 82
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.46 E-value=0.004 Score=51.10 Aligned_cols=137 Identities=22% Similarity=0.211 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+++...+.+..+.|..+|.+..+.+.+..++....++|.-+ ..++.+.|.++|+...+. +..+...|..-|+-+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 578888888899999999999997764556666656555433 346677899999988874 446788899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCC---ChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCcccccchh
Q 025226 191 GSPADAMNIYEDMIKSPDPP---EELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYDPPE 250 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~~li 250 (256)
|+.+.|..+|++.... +.+ ....|...++-=.+.|+++...+ .......|+......++
T Consensus 84 ~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 84 NDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp T-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred CcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999998876 322 23599999999999998887666 33344455544333333
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.40 E-value=0.0047 Score=45.30 Aligned_cols=102 Identities=8% Similarity=-0.089 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
.+..+-..+...|++++|...|+...... ..+...|..+-..+.+.|++++|...|++..+.. ..+...+..+-.++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35566778889999999999999988743 2367888899999999999999999999999763 347788888999999
Q ss_pred CCCChHHHHHh--hhhhcCCCccccc
Q 025226 224 PHPLLRSKVKK--DFEELFPEKHAYD 247 (256)
Q Consensus 224 ~~g~~~~a~~~--~~~~~~p~~~~~~ 247 (256)
..|+.++|+.. ..-.+.|+...|.
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999993 3344566654443
No 84
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.37 E-value=0.0013 Score=41.23 Aligned_cols=64 Identities=17% Similarity=0.273 Sum_probs=44.9
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 025226 117 ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI 184 (256)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li 184 (256)
.+.|++++|.+.|+...+.. +-+...+-.+..+|.+.|++++|.++++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45677888888888877774 447777777888888888888888888877763 36655555544
No 85
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.36 E-value=0.0085 Score=51.55 Aligned_cols=115 Identities=15% Similarity=0.165 Sum_probs=94.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCC
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGS 192 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 192 (256)
-.+...|++++|+..++.+.+.- +-|+.-+......+.+.++.++|.+.++++... .|+ ...+-.+=.+|.+.|+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~--P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ--PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence 34556789999999999998773 556666677788999999999999999999874 576 4556677788999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 193 ~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+++|..++++-... .+-|+..|..|-++|...|+..++..
T Consensus 390 ~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 390 PQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred hHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHH
Confidence 99999999987755 35588899999999999987777655
No 86
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.34 E-value=0.0097 Score=50.61 Aligned_cols=99 Identities=20% Similarity=0.172 Sum_probs=59.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCh
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~ 193 (256)
.....|++++|++.|++..+.. .-+...|..+-.+|.+.|++++|...+++..+. .| +...|..+-.+|.+.|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 3445566777777777666664 445566666666666777777777777666653 23 345566666666667777
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHH
Q 025226 194 ADAMNIYEDMIKSPDPPEELPFRILL 219 (256)
Q Consensus 194 ~~a~~~~~~M~~~g~~p~~~t~~~li 219 (256)
++|...|++..+. .|+.......+
T Consensus 87 ~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7777777666654 34444443333
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.33 E-value=0.031 Score=51.66 Aligned_cols=117 Identities=12% Similarity=0.051 Sum_probs=80.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh-HHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT-YTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~ 190 (256)
|-......|.+++|+.+++...+.. .-+....-.+...+.+.+++++|....++..+. .|+..+ .+.+=.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 4444556778888888888777663 445566677777788888888888888877764 355544 34444455567
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|++++|.++|++....+ .-+..++..+-..+-..|+.++|..
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~ 209 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARD 209 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888877632 2236677777777777787777766
No 88
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00062 Score=44.90 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=49.1
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHH
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~ 197 (256)
.|+++.|+.+|+.+.+...-.|+...+-.+-.+|.+.|++++|.+++++ .+ ..|+. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4677888888888777651112344444477777888888888888877 22 11322 22223355566778888888
Q ss_pred HHHHH
Q 025226 198 NIYED 202 (256)
Q Consensus 198 ~~~~~ 202 (256)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77764
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.27 E-value=0.0088 Score=52.82 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=140.5
Q ss_pred cccccCCchHHHHHHHHHhcC-----CC----ccccc----cccCCCCCCCCcccCcccccccccccCCCCCCcccccc-
Q 025226 5 LFSRSKIPILASIVLQNLTKN-----PS----KNFSF----LAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKK- 70 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~-----~~----~~~ll----~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~- 70 (256)
.|...|+.+.|..+++.-.+. |. ..+++ ..+...+...++ +.+|+.+..-.... .+..
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eA-----v~ly~~AL~i~e~~---~G~~h 279 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEA-----VNLYEEALTIREEV---FGEDH 279 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHHHHh---cCCCC
Confidence 466778888888888764322 21 22222 233344555555 66666554321100 0000
Q ss_pred -ccchhHHHHHHHhhcCCCcHHHHHHHHHHHhh--c--cC-CCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCC--C
Q 025226 71 -LIGKEALFVILGLKRFKDDEEKLQKFIKTHVL--R--LL-KMDIV----AVLIELERQEETILAVKIFDIIRKQDW--Y 138 (256)
Q Consensus 71 -~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~--~--~~-~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~--~ 138 (256)
-.......+-..|++.|++.+|-.-+-..+.. . +. .|.+. .+...++..+++++|..+++...+.-. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 01223334455789999999986433322221 1 11 12222 267778888999999999986543310 1
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHh--
Q 025226 139 QP----DAYIYKDLIIALARTGKMNEAMQVWESMRKE----D--LFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIK-- 205 (256)
Q Consensus 139 ~p----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g--~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~-- 205 (256)
.+ -..+|+.|=..|-..|++++|+++|++.... + ..+. -..++.|=..|-+.+..++|.++|.+-..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 22 2478999999999999999999999987642 1 2232 45678888899999999999999987543
Q ss_pred --CCC--CCChhHHHHHHHHhcCCCChHHHHH
Q 025226 206 --SPD--PPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 206 --~g~--~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
-|. +-...||..|...|...|++++|.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 232 2234678899999999999999988
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.27 E-value=0.059 Score=42.23 Aligned_cols=154 Identities=14% Similarity=0.019 Sum_probs=108.8
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
...+.+-.+|...|+...|...+- +..+.. |+.. .+-..|-+.|+.+.|.+-|..-.+.. +-+-.+.|..=
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nle-kAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~GdVLNNYG 110 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLE-KALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA--PNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH-HHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCccchhhhhh
Confidence 344455678999999999976554 333322 4433 35555678899999999999888775 45566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 150 IALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
..+|..|++++|...|++.... ...--..||..+--+..+.|+.+.|.+.|.+-.+..- -...+.-.+.+...+.|++
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDY 189 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccc
Confidence 7889999999999999988875 1112246777777777789999999999998776521 1234455666777777777
Q ss_pred HHHHH
Q 025226 229 RSKVK 233 (256)
Q Consensus 229 ~~a~~ 233 (256)
..|..
T Consensus 190 ~~Ar~ 194 (250)
T COG3063 190 APARL 194 (250)
T ss_pred hHHHH
Confidence 76655
No 91
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.24 E-value=0.017 Score=42.37 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHHcCCh
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKD---LIIALARTGKMNEAMQVWESMRKEDLFPDS--QTYTEVIRGFLKDGSP 193 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~ 193 (256)
.++...+...++.+.+.. ..++...-. +-..+...|++++|...|+......-.|+. ...-.|-..+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 455555555555555443 222111111 223444455555555555555554311111 1222234444455555
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 194 ~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++|+..++......+ ....+...-+.|.+.|++++|..
T Consensus 102 d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 102 DEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555544222222 22233344445555555555544
No 92
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.13 E-value=0.0088 Score=49.15 Aligned_cols=149 Identities=11% Similarity=0.035 Sum_probs=107.7
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA-VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
-..|.+.|-+.+|- ..++...+..--||.+. |-++|.+..+.+.|+.+|.+-.+.- .-|+.-..-+-..+-..++.
T Consensus 230 gkCylrLgm~r~Ae-kqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--P~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 230 GKCYLRLGMPRRAE-KQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--PFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHhcChhhhH-HHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--CchhhhhhhhHHHHHHHHhH
Confidence 45677778787775 55556656555577775 6678889999999999999887662 33443344556667778999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++|.++++...+.. ..++....++-.+|.=.++++-|+.+++++.+.|+. ++..|+.+--+|.-.+.++-++-
T Consensus 307 ~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 307 EDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999877642 135566666777788889999999999999999985 45566666666666666665544
No 93
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.13 E-value=0.0086 Score=38.91 Aligned_cols=90 Identities=16% Similarity=0.195 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
+|..+...+...|++++|...|++..+.. ..+...+..+-..+...|++++|.+.|++..+.. ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987742 1234677888888889999999999999987764 223467888888999
Q ss_pred CCCChHHHHHhh
Q 025226 224 PHPLLRSKVKKD 235 (256)
Q Consensus 224 ~~g~~~~a~~~~ 235 (256)
..|++++|....
T Consensus 80 ~~~~~~~a~~~~ 91 (100)
T cd00189 80 KLGKYEEALEAY 91 (100)
T ss_pred HHHhHHHHHHHH
Confidence 999999888743
No 94
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.031 Score=44.69 Aligned_cols=155 Identities=14% Similarity=0.114 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHH-HH--HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIV-AV--LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~-~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
.++.++.+..+.+.+.......+.. .+ ...|++.+++++|++.... + -.......| +..+.+..++|-|+
T Consensus 85 e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~-~~lE~~Al~--VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 85 ESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----G-ENLEAAALN--VQILLKMHRFDLAE 157 (299)
T ss_pred cchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----c-chHHHHHHH--HHHHHHHHHHHHHH
Confidence 5555666666666666555555533 23 3457889999999988876 2 133333333 45567888899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhh
Q 025226 163 QVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEE 238 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~ 238 (256)
+.+++|.+- -+..|.+.|-.+|.+ .+++.+|+-+|++|-+. ..|++-+-+....++...|++++|-.....-
T Consensus 158 ~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 999999984 467788878777776 45789999999999764 6789999999999999999999997744444
Q ss_pred cCCCcccccchhH
Q 025226 239 LFPEKHAYDPPEE 251 (256)
Q Consensus 239 ~~p~~~~~~~li~ 251 (256)
+..|.--+.+|++
T Consensus 234 L~kd~~dpetL~N 246 (299)
T KOG3081|consen 234 LDKDAKDPETLAN 246 (299)
T ss_pred HhccCCCHHHHHH
Confidence 4444333444443
No 95
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.08 E-value=0.004 Score=45.66 Aligned_cols=70 Identities=23% Similarity=0.311 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH-----hCCCCCChhHH
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI-----KSPDPPEELPF 215 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~-----~~g~~p~~~t~ 215 (256)
...++..+...|++++|.++.+.+.... +-|...|-.+|.+|...|+...|.++|+++. +.|+.|+..|-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3444455555666666666666655521 1245566666666666666666666665553 23666665553
No 96
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.015 Score=49.87 Aligned_cols=205 Identities=9% Similarity=-0.011 Sum_probs=141.2
Q ss_pred CchHHHHHHHHHhcCCC-----ccccccccCC-CCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhh
Q 025226 11 IPILASIVLQNLTKNPS-----KNFSFLAFKP-KSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLK 84 (256)
Q Consensus 11 ~~~~A~~l~~~m~~~~~-----~~~ll~a~~~-~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 84 (256)
+.+++.+-.+.+...|+ +.+.+.+++- ..+++.+ +++|+++.+..+ .+.+.+ ..+..++ |.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a-----~s~Feei~knDP----YRl~dm--dlySN~L--Yv 308 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQA-----ESVFEEIRKNDP----YRLDDM--DLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHhcCC----CcchhH--HHHhHHH--HH
Confidence 44555555555555555 2333333332 3457778 999988887633 222222 1111111 23
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIVAVL-IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 163 (256)
+..+.+-+. ....-......+|..-.+| +=|+-.++.++|...|+...+.+ +-....|+.+=.-|....+...|.+
T Consensus 309 ~~~~skLs~-LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKSKLSY-LAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhHHHHH-HHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHH
Confidence 333222221 1112233455667655544 44555788999999999999887 6778899999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 164 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
-+....+-+ +.|-..|=.|=.+|.-.+.+.-|+-.|++-.+-. +-|+..|.+|=++|.+.++.++|++
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHH
Confidence 999988732 3488999999999999999999999999876541 2378999999999999999999998
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.04 E-value=0.14 Score=43.14 Aligned_cols=155 Identities=12% Similarity=0.005 Sum_probs=96.5
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHH---HHHH----cCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLI---ELER----QEETILAVKIFDIIRKQDWYQPD-AYIYKDLIIALA 153 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~---~~~~----~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~ 153 (256)
.+...|+.+++...+ +..... .|+....+. .+.. .+....+.+.+.. ..+ ..|+ ......+-..+.
T Consensus 52 ~~~~~g~~~~A~~~~-~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 52 SAWIAGDLPKALALL-EQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAP-ENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHcCCHHHHHHHH-HHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCc-CCCCcHHHHHHHHHHHH
Confidence 445678888887433 444332 243321111 2222 3445555555554 112 2333 334445566778
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCCh--hHHHHHHHHhcCCCChHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-PPEE--LPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~-~p~~--~t~~~li~~~~~~g~~~~ 230 (256)
..|++++|.+.+++..+.. +.+...+..+-..|...|++++|.+++++.....- .|+. ..|-.+...+...|++++
T Consensus 126 ~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~ 204 (355)
T cd05804 126 EAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA 204 (355)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999988753 22356677777888889999999999998776522 2332 345578888999999999
Q ss_pred HHHhhhhhcCCCc
Q 025226 231 KVKKDFEELFPEK 243 (256)
Q Consensus 231 a~~~~~~~~~p~~ 243 (256)
|......-+.+++
T Consensus 205 A~~~~~~~~~~~~ 217 (355)
T cd05804 205 ALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHhcccc
Confidence 9986555454443
No 98
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.00 E-value=0.06 Score=39.37 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=80.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH--HHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV------AVLIELERQEETILAVKIFDIIRKQDWYQPDA--YIYKDL 148 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~y~~l 148 (256)
..++..+ ..++..++. ..++.+....- .+.. .+=..+...|++++|...|++..... ..|+. ...-.+
T Consensus 16 ~~~~~~~-~~~~~~~~~-~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 16 EQALQAL-QAGDPAKAE-AAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHH-HCCCHHHHH-HHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 3344444 466676664 43444444321 1212 24567788999999999999999875 23332 234446
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 202 (256)
-..+...|++++|...++....... ....+...=..|.+.|+.++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6778889999999999987544332 334556677778999999999999975
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.99 E-value=0.025 Score=52.09 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=115.8
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
+.-|-+.|+...|++.+.+...-.+ ..|.. .++..|...++-+.|.+.++.-...+.-..+...+|+++..|
T Consensus 248 s~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~ 326 (895)
T KOG2076|consen 248 SSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELF 326 (895)
T ss_pred HHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Confidence 4566778888888876654433222 12222 257777777878888888887766332356667788888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCC---------------------------C-------------------------------
Q 025226 153 ARTGKMNEAMQVWESMRKEDL---------------------------F------------------------------- 174 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~---------------------------~------------------------------- 174 (256)
.+...++.|......+..... .
T Consensus 327 l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~ 406 (895)
T KOG2076|consen 327 LKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED 406 (895)
T ss_pred HHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh
Confidence 888777777777766655111 1
Q ss_pred -----CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhhcCCCcccccch
Q 025226 175 -----PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEKHAYDPP 249 (256)
Q Consensus 175 -----p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~p~~~~~~~l 249 (256)
-+...|.-+-.+|.+.|++..|+.+|..+......-+...|--+-++|-..|..++|++--.+-+.-++.++++.
T Consensus 407 n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~R 486 (895)
T KOG2076|consen 407 NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDAR 486 (895)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhh
Confidence 122335566777888999999999999998875555677888899999999999999883333334444555554
Q ss_pred hH
Q 025226 250 EE 251 (256)
Q Consensus 250 i~ 251 (256)
|.
T Consensus 487 i~ 488 (895)
T KOG2076|consen 487 IT 488 (895)
T ss_pred hh
Confidence 43
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.99 E-value=0.095 Score=48.52 Aligned_cols=120 Identities=13% Similarity=0.114 Sum_probs=97.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
-....+.|+.++|.. +++... .+.||.. .+...+.+.+++++|+..+++..... .-+....+.+-.++...
T Consensus 93 a~i~~~~g~~~ea~~-~l~~~~--~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 93 ARALEAAHRSDEGLA-VWRGIH--QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHcCCcHHHHH-HHHHHH--hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHh
Confidence 345567899999874 444432 3567766 48889999999999999999999886 55667778888889999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 156 GKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
|++++|.++|++.... .|+ ..++..+=..+-+.|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999972 344 788888888899999999999999998765
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.98 E-value=0.069 Score=45.12 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=74.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--hhHHHHHHHHHHc
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL-FPDS--QTYTEVIRGFLKD 190 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~ 190 (256)
..+...|++++|.+.+++..+.. +.+...+..+-..|...|++++|...+++.....- .|+. ..|-.+-..+...
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 46678999999999999999886 56677888888999999999999999998876421 2333 3455788889999
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|+.++|.+++++....
T Consensus 200 G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 200 GDYEAALAIYDTHIAP 215 (355)
T ss_pred CCHHHHHHHHHHHhcc
Confidence 9999999999998654
No 102
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.98 E-value=0.019 Score=47.90 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=86.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.-|.-+...|+.+.|.++-.+.+ .||-.-|-..|.+|+..+++++-+++-.+ + -..+-|-..+..|.+.
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHHC
Confidence 45777788899999988877765 69999999999999999999999887543 2 2458999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|+..+|..+..+ .++.--+..|.+.|++.+|.+
T Consensus 251 ~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~ 283 (319)
T PF04840_consen 251 GNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQ 283 (319)
T ss_pred CCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHH
Confidence 999999999887 334677889999999999987
No 103
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.97 E-value=0.065 Score=47.48 Aligned_cols=159 Identities=13% Similarity=0.053 Sum_probs=110.5
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhh-----ccCC-CcHHHHHH----HHHHcCCHHHHHHHHHHHHhc-----CCCC
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVL-----RLLK-MDIVAVLI----ELERQEETILAVKIFDIIRKQ-----DWYQ 139 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~li~----~~~~~~~~~~a~~~~~~m~~~-----~~~~ 139 (256)
....+...|...|++++|...+ +.... .|.. |.+.++++ .|...+.+.+|..+|+++... |...
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~-k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLC-KQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344678899999999997444 33322 2322 34444444 566789999999999987633 2112
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---C--C-CCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhC---CC
Q 025226 140 PD-AYIYKDLIIALARTGKMNEAMQVWESMRK---E--D-LFPDSQ-TYTEVIRGFLKDGSPADAMNIYEDMIKS---PD 208 (256)
Q Consensus 140 p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~--g-~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~M~~~---g~ 208 (256)
|. ..+++.|-.+|++.|++++|...+++..+ . | ..|.+. -++.+...|+..+++++|..++.+-.+. -.
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 35677777789999999999988886653 1 2 223443 3667778888999999999999876532 12
Q ss_pred CCC----hhHHHHHHHHhcCCCChHHHHHh
Q 025226 209 PPE----ELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 209 ~p~----~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
.++ ..+++.|-..|.+.|++.+|.++
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~ 389 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEEL 389 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 233 36789999999999999999883
No 104
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.07 Score=46.96 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=91.6
Q ss_pred chhHHHHHHHhhcCCCcHHHHHHHHHHHhh-cc-CCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 025226 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVL-RL-LKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 150 (256)
+..|+..-+.|+-.+..++|+..+....+- .| ..|..+ +=--|.+.++++.|.+.|.+..... +-|+...+-+=-
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY-lgmey~~t~n~kLAe~Ff~~A~ai~--P~Dplv~~Elgv 422 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY-LGMEYMRTNNLKLAEKFFKQALAIA--PSDPLVLHELGV 422 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH-HHHHHHHhccHHHHHHHHHHHHhcC--CCcchhhhhhhh
Confidence 457777777788888888877555432211 12 122222 1223455666777777777666553 455555555544
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CCC----CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 151 ALARTGKMNEAMQVWESMRKE--DLF----PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~--g~~----p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
..-..+.+.+|...|+.-+.. .+. .-..+++.|=..|.+.++.++|+..|++-... .+-|..||.++--.|..
T Consensus 423 vay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~l 501 (611)
T KOG1173|consen 423 VAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHL 501 (611)
T ss_pred eeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHH
Confidence 444556666666666655421 111 12344555556666666666666666655433 12355666666666666
Q ss_pred CCChHHHHH--hhhhhcCCCc
Q 025226 225 HPLLRSKVK--KDFEELFPEK 243 (256)
Q Consensus 225 ~g~~~~a~~--~~~~~~~p~~ 243 (256)
.|.++.|++ -+.-.+.||.
T Consensus 502 lgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 502 LGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hcChHHHHHHHHHHHhcCCcc
Confidence 666666666 3333444544
No 105
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.02 Score=49.49 Aligned_cols=144 Identities=14% Similarity=0.129 Sum_probs=101.9
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHH-HHHHHH---HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIV-AVLIEL---ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
.+++++|+..|-+ . ..+.|... +.|.-| .+.+.++++...|++.++. ++--+..||-.-..+...+++++|
T Consensus 407 L~q~e~A~aDF~K-a--i~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A 481 (606)
T KOG0547|consen 407 LQQYEEAIADFQK-A--ISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKA 481 (606)
T ss_pred HHHHHHHHHHHHH-H--hhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHH
Confidence 4556777755532 2 23445433 444443 3678999999999999988 577788999999999999999999
Q ss_pred HHHHHHHHhCC-----CCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 162 MQVWESMRKED-----LFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 162 ~~~~~~m~~~g-----~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
.+.|+...+.. +..+ ...--+++-.= ..+++..|.+++++-.+..-+ ....|.+|-.--.+.|++++|+++
T Consensus 482 ~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAiel 559 (606)
T KOG0547|consen 482 VKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIEL 559 (606)
T ss_pred HHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999887631 1111 12222222222 358999999999988766322 457888999999999999999995
Q ss_pred hh
Q 025226 235 DF 236 (256)
Q Consensus 235 ~~ 236 (256)
+.
T Consensus 560 FE 561 (606)
T KOG0547|consen 560 FE 561 (606)
T ss_pred HH
Confidence 44
No 106
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.012 Score=54.68 Aligned_cols=111 Identities=15% Similarity=0.280 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 199 (256)
+..++|+++|.+..+.. +.|...-|-+=..++.+|++++|..+|.+..+... -+..+|-.+-..|...|++..|+++
T Consensus 626 k~~~KAlq~y~kvL~~d--pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRND--PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHhcC--cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 45689999999988886 67888888888889999999999999999888643 2446788888999999999999999
Q ss_pred HHHHH-hCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 200 YEDMI-KSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 200 ~~~M~-~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|+.-. ...-.-++...+.|-+++.+.|.+.++++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 98654 44556678888899999999999999988
No 107
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.0073 Score=44.24 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-----EDLFPDSQT 179 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t 179 (256)
.++..+...|++++|.++...+.... +.|...|-.+|.+|...|+..+|.++|+++.+ .|+.|+..|
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 36677788999999999999999986 77899999999999999999999999998864 389898765
No 108
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.87 E-value=0.13 Score=40.74 Aligned_cols=128 Identities=13% Similarity=0.060 Sum_probs=88.2
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHH-H---HHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCCH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIV-A---VLIELERQ--------EETILAVKIFDIIRKQDWYQPDA 142 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-~---li~~~~~~--------~~~~~a~~~~~~m~~~~~~~p~~ 142 (256)
+..+-..+-+.++.++|+..+ +...+ ..-.|... + +-.++.+. |+.++|.+.|+...+.. +-+.
T Consensus 73 ~~~la~~~~~~~~~~~A~~~~-~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~ 149 (235)
T TIGR03302 73 QLDLAYAYYKSGDYAEAIAAA-DRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSE 149 (235)
T ss_pred HHHHHHHHHhcCCHHHHHHHH-HHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCCh
Confidence 344567788899999998655 44433 33233321 1 22223322 77999999999998775 2222
Q ss_pred HHHH-----------------HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 143 YIYK-----------------DLIIALARTGKMNEAMQVWESMRKED--LFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 143 ~~y~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
..+. .+-..|.+.|++++|...|++..+.. -......+..+...+.+.|+.++|..+++.+
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2222 23455778899999999999988742 1223578899999999999999999999988
Q ss_pred HhC
Q 025226 204 IKS 206 (256)
Q Consensus 204 ~~~ 206 (256)
...
T Consensus 230 ~~~ 232 (235)
T TIGR03302 230 GAN 232 (235)
T ss_pred Hhh
Confidence 765
No 109
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.87 E-value=0.032 Score=38.70 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCChhHHHH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPD----SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD--PPEELPFRI 217 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~--~p~~~t~~~ 217 (256)
++-.+...+.+.|++++|.+.|+++.+.. |+ ...+..+...+.+.|++++|...|++.....- ......+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 56667778889999999999999998742 33 34566788899999999999999999886521 223456778
Q ss_pred HHHHhcCCCChHHHHH
Q 025226 218 LLKGLLPHPLLRSKVK 233 (256)
Q Consensus 218 li~~~~~~g~~~~a~~ 233 (256)
+...+.+.|+.++|.+
T Consensus 82 ~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 82 LGMSLQELGDKEKAKA 97 (119)
T ss_pred HHHHHHHhCChHHHHH
Confidence 8888999999999988
No 110
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.058 Score=48.18 Aligned_cols=187 Identities=11% Similarity=0.033 Sum_probs=126.7
Q ss_pred cccccCCchHHHHHHHHHhcCCC---ccccccccCC--CCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS---KNFSFLAFKP--KSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~---~~~ll~a~~~--~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.|+=.++.+.|++.|+...+-+- |.-.+.+.-. ....+.+ ...|+......++. +| .|.-+
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a-----~~~fr~Al~~~~rh----Yn-----AwYGl 495 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKA-----MKSFRKALGVDPRH----YN-----AWYGL 495 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhH-----HHHHHhhhcCCchh----hH-----HHHhh
Confidence 35667888999999998765443 5555433321 2233344 56664433332222 22 23333
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
-..|.|.++.+.|. ..++.. ..+.|... .+-..+-+.|+.++|++++++..... ..|+..-=-....+...
T Consensus 496 G~vy~Kqek~e~Ae-~~fqkA--~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld--~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAE-FHFQKA--VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD--PKNPLCKYHRASILFSL 570 (638)
T ss_pred hhheeccchhhHHH-HHHHhh--hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC--CCCchhHHHHHHHHHhh
Confidence 45678999999985 444433 33445443 25566678899999999999998886 45655555566777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh
Q 025226 156 GKMNEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~ 212 (256)
++.++|...++++++ +.|+. ..|-.+-..|-+.|+.+.|+.-|.-+.+..-+++.
T Consensus 571 ~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 571 GRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 999999999999998 45764 66777788899999999999999888877555544
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.78 E-value=0.17 Score=44.50 Aligned_cols=125 Identities=18% Similarity=0.198 Sum_probs=102.5
Q ss_pred cCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHhh
Q 025226 104 LLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQP-DAYIYKDLIIALARTGKMNEAMQVWE-SMRKEDLFPDSQT 179 (256)
Q Consensus 104 ~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t 179 (256)
...|+.. .+|+.-.+..-++.|..+|.+..+.+ ..+ .++.++++|.-||. ++.+-|.++|+ -|++. +|...
T Consensus 362 ~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~-r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~ 436 (656)
T KOG1914|consen 362 DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK-RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPE 436 (656)
T ss_pred ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc-CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChH
Confidence 3445544 58888889889999999999999998 555 99999999998874 67889999999 56664 45544
Q ss_pred H-HHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--hhHHHHHHHHhcCCCChHHHHH
Q 025226 180 Y-TEVIRGFLKDGSPADAMNIYEDMIKSPDPPE--ELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 180 ~-~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~ 233 (256)
| ...++-+...++=..+..+|++....++.|+ ...|..+|+-=..-|++...++
T Consensus 437 yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~ 493 (656)
T KOG1914|consen 437 YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK 493 (656)
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence 4 5677888888999999999999998866655 4789999999999999998877
No 112
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.78 E-value=0.0061 Score=38.10 Aligned_cols=63 Identities=22% Similarity=0.449 Sum_probs=49.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li 219 (256)
...|++++|.++|++..+. .| |...+-.+...|.+.|++++|.+++++.... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4678999999999998774 24 6677778999999999999999999998877 45655555544
No 113
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.77 E-value=0.1 Score=39.39 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=72.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD--AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~ 188 (256)
+-..+...|++++|...|++..+.. ..+. ...|..+-..|.+.|++++|...+++..+. .| +...+..+-..|.
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLE-EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh-hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH
Confidence 5556677899999999999888664 2222 467888889999999999999999988774 34 3455666666666
Q ss_pred HcCC--------------hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 189 KDGS--------------PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 189 ~~g~--------------~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
..|+ +++|.+++.+.... ++..|..++.-+...|+
T Consensus 118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCc
Confidence 6665 34455555554443 33335555555554443
No 114
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.75 E-value=0.11 Score=36.73 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=66.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDWYQPD----AYIYKDLIIA 151 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~ 151 (256)
..+-..|+.++|+ .+++.....|+..... .+=+.+...|++++|..++++..... |+ ......+-.+
T Consensus 9 ~a~d~~G~~~~Ai-~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 9 WAHDSLGREEEAI-PLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHhcCCHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHH
Confidence 3456678888887 4556666677655433 25566777888888888888877653 33 1222223346
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
+...|+.++|.+.+-.... ++...|.--|..|+.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 6677888888888877665 566677777777754
No 115
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.67 E-value=0.018 Score=46.49 Aligned_cols=34 Identities=12% Similarity=0.269 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
+.++-....+..|++-| +.-|..+|+.||+.+-+
T Consensus 86 ~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPK 119 (406)
T ss_pred chHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCcc
Confidence 45666666666777777 77777777777766543
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.66 E-value=0.013 Score=36.31 Aligned_cols=55 Identities=24% Similarity=0.223 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
..+.+.|++++|.+.|++..+.. .-+...+-.+-.++...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666666666666654 33555666666666666666666666666654
No 117
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.64 E-value=0.11 Score=45.04 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=79.2
Q ss_pred hhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCC
Q 025226 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPD-AYIYKDLIIALARTGK 157 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~~~g~ 157 (256)
+-..+..++|...+ +...+ -.|+.. .....+.+.++.++|.+.++.+.... |+ ....-.+-.+|.+.|+
T Consensus 316 ~~~~~~~d~A~~~l-~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~---P~~~~l~~~~a~all~~g~ 389 (484)
T COG4783 316 TYLAGQYDEALKLL-QPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALD---PNSPLLQLNLAQALLKGGK 389 (484)
T ss_pred HHHhcccchHHHHH-HHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC---CCccHHHHHHHHHHHhcCC
Confidence 34566677776433 33322 224333 46677778888888888888887663 44 5666667778888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
+.+|..+++..... .+-|...|..|-.+|...|+..++..-..++..
T Consensus 390 ~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 390 PQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred hHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 88888888876654 334778888888888888877777766666554
No 118
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.64 E-value=0.0015 Score=43.02 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 155 TGKMNEAMQVWESMRKEDL-FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.|+++.|..+|+++.+..- .|+...+-.+-.+|.+.|++++|.+++++ .+.+.. +....-.+-++|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5789999999999998532 22445555588999999999999999998 322221 22344456788999999999988
Q ss_pred h
Q 025226 234 K 234 (256)
Q Consensus 234 ~ 234 (256)
.
T Consensus 80 ~ 80 (84)
T PF12895_consen 80 A 80 (84)
T ss_dssp H
T ss_pred H
Confidence 4
No 119
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.62 E-value=0.12 Score=47.86 Aligned_cols=176 Identities=13% Similarity=0.034 Sum_probs=117.3
Q ss_pred CCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCC----cHHHHHH
Q 025226 39 SPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKM----DIVAVLI 114 (256)
Q Consensus 39 ~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~li~ 114 (256)
|+.+.+ ..++.+..+..++. ...|..+-..|-+.|+.++++..+ +...-+.| .+..+=.
T Consensus 153 g~~eeA-----~~i~~EvIkqdp~~---------~~ay~tL~~IyEqrGd~eK~l~~~---llAAHL~p~d~e~W~~lad 215 (895)
T KOG2076|consen 153 GDLEEA-----EEILMEVIKQDPRN---------PIAYYTLGEIYEQRGDIEKALNFW---LLAAHLNPKDYELWKRLAD 215 (895)
T ss_pred CCHHHH-----HHHHHHHHHhCccc---------hhhHHHHHHHHHHcccHHHHHHHH---HHHHhcCCCChHHHHHHHH
Confidence 555555 66666666555544 456666666777888888876422 22233333 2334555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHH----HHHHHHc
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEV----IRGFLKD 190 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l----i~~~~~~ 190 (256)
-..+.|++++|.-.|.+..+.. +++...+---...|-+.|+...|.+-|.++....-..|..-+-.+ +..|-..
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 5667788889988888888876 566666666677888889999999888888875322222223333 4445556
Q ss_pred CChhHHHHHHHHHHh-CCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 191 GSPADAMNIYEDMIK-SPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++.+.|.+.++.-.. .+-..+...+++++..|.+...++.+..
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~ 337 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALM 337 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhH
Confidence 777888888876654 3445677788888888888888888777
No 120
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.58 E-value=0.035 Score=39.28 Aligned_cols=54 Identities=13% Similarity=0.132 Sum_probs=28.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPD--AYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+-..|+.++|+.+|.+-...| ...+ ...+=.+-++|...|++++|..+|++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334566666666666666555 3222 12333344455555666666666665554
No 121
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.58 E-value=0.075 Score=43.93 Aligned_cols=129 Identities=15% Similarity=0.203 Sum_probs=91.3
Q ss_pred CcHHHHHH---HHHHHhhccCCCcHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHH
Q 025226 88 DDEEKLQK---FIKTHVLRLLKMDIVAVLIELERQE---------ETILAVKIFDIIRKQDWY--QPDAYIYKDLIIALA 153 (256)
Q Consensus 88 ~~~~a~~~---~~~~~~~~~~~~~~~~li~~~~~~~---------~~~~a~~~~~~m~~~~~~--~p~~~~y~~li~~~~ 153 (256)
+++++++. +++.+.+.|.+-+.++.+.++.-.. ....|..+|+.|++..++ .++..++.+|+..
T Consensus 73 ~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~-- 150 (297)
T PF13170_consen 73 DPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM-- 150 (297)
T ss_pred CHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--
Confidence 47776654 4567788888888786666554322 368999999999998743 5777888888776
Q ss_pred hcCC----HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 154 RTGK----MNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGS---PADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 154 ~~g~----~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~---~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
..++ .+.++.+|+.+.+.|+..+ ..-+-+-|-+++.... +.++.++++.+.+.|+++....|..+
T Consensus 151 ~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 151 TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 3333 5777889999998887764 3344444545444322 45789999999999999888887754
No 122
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.58 E-value=0.076 Score=39.84 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=63.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQP--DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~ 188 (256)
+...+...|++++|+..|....... ..| ...+|..+-..|...|++++|...+++..+. .|+ ..+++.+-..|.
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLE-IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc-ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHH
Confidence 4555667799999999999887653 222 2357888888999999999999999988764 233 345556655666
Q ss_pred -------HcCChhHHHHHHHHH
Q 025226 189 -------KDGSPADAMNIYEDM 203 (256)
Q Consensus 189 -------~~g~~~~a~~~~~~M 203 (256)
+.|+++.|...+++-
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHH
Confidence 777877666666543
No 123
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.047 Score=45.51 Aligned_cols=132 Identities=12% Similarity=0.133 Sum_probs=94.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE-VIRGFLK 189 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-li~~~~~ 189 (256)
++-+.+.-.-++++++-.++.++.-- ..-|.+.|| +-.+++..|.+.+|+++|-......++ |..+|-+ |-+.|.+
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR 440 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence 46666667778899998888888775 566666666 568889999999999999887664443 5667765 4567889
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCccccc
Q 025226 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYD 247 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~ 247 (256)
+++++-|+++|-+|...+- .-.....+.+-|.+.+++--|.+ -..+...|++..|.
T Consensus 441 nkkP~lAW~~~lk~~t~~e--~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNTPSE--RFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred cCCchHHHHHHHhcCCchh--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 9999999998877765432 11223345567778887766665 34456677777664
No 124
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.56 E-value=0.085 Score=43.59 Aligned_cols=125 Identities=10% Similarity=0.046 Sum_probs=82.9
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHH----HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLI----ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
.++..+-..|-+...+..|+..+ .+-. ..-|--+|++- .+-..++.++|.++|+...+.. ..++....++-
T Consensus 257 dTfllLskvY~ridQP~~AL~~~-~~gl--d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~--~~nvEaiAcia 331 (478)
T KOG1129|consen 257 DTFLLLSKVYQRIDQPERALLVI-GEGL--DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH--PINVEAIACIA 331 (478)
T ss_pred hHHHHHHHHHHHhccHHHHHHHH-hhhh--hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC--Cccceeeeeee
Confidence 34555567788888888887433 2221 22344444433 3344577888888888887775 56777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
..|.-.++.+-|.+.+.++.+.|+. +...|+.+=-.|.-.+++|-++.-|.+-.
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 7777888888888888888887774 55566666555556667777776666654
No 125
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.51 E-value=0.045 Score=39.09 Aligned_cols=55 Identities=7% Similarity=0.147 Sum_probs=49.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCC
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~ 192 (256)
..|+..+..+++.+|+..|++..|.++.+...+. ++.-+..+|..|+.-.-..-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999999998875 888889999999998766543
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.49 E-value=0.097 Score=44.57 Aligned_cols=103 Identities=12% Similarity=-0.055 Sum_probs=76.1
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
-..+...|++++|+..+ +...+.. -.+... .+-.++.+.|++++|+..++...+.. ..+...|..+-.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~-~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLY-TQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCC
Confidence 34556789999998655 4443322 112222 35667888999999999999999886 5678889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
+++|...|++..+. .|+.......+.-|
T Consensus 86 ~~eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999999998873 46665555555433
No 127
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.44 E-value=0.081 Score=39.92 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
....|..+-..|...|++++|...|++..+..-.++ ...|..+-..|.+.|++++|...+.+..+... -+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHH
Confidence 445677778888899999999999999886432222 46788899999999999999999999887521 134555566
Q ss_pred HHHhcCCCC
Q 025226 219 LKGLLPHPL 227 (256)
Q Consensus 219 i~~~~~~g~ 227 (256)
...|...|+
T Consensus 113 g~~~~~~g~ 121 (172)
T PRK02603 113 AVIYHKRGE 121 (172)
T ss_pred HHHHHHcCC
Confidence 666766665
No 128
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.42 E-value=0.33 Score=38.17 Aligned_cols=167 Identities=16% Similarity=0.133 Sum_probs=127.1
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHH----HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLI----ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~----~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 150 (256)
.+..+-..|-+.|..+.|-+.+-+.+. +.|+...+++ .+|..|.+++|.+-|++-.....+.--..||..+--
T Consensus 71 a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 71 AHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 556667788999999999766654443 3454444444 468999999999999999877645555678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+..+.|+.+.|...|++-.+.. |+ ..+.-.+-...-+.|+.-.|..++++-...+. ++..+.-.-|+---..|+-+
T Consensus 148 Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 148 CALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999988742 33 35566777788889999999999999988876 88888888888777888866
Q ss_pred HHHH--hhhhhcCCCccccc
Q 025226 230 SKVK--KDFEELFPEKHAYD 247 (256)
Q Consensus 230 ~a~~--~~~~~~~p~~~~~~ 247 (256)
.+-+ .-.....|....|-
T Consensus 225 ~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 225 AAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHHHHHHHHHhCCCcHHHH
Confidence 6555 44455566655443
No 129
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.39 E-value=0.025 Score=45.67 Aligned_cols=83 Identities=14% Similarity=0.258 Sum_probs=49.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh-hHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-ADA 196 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a 196 (256)
-.+|++--..+++-|.+-. +.|... |-...--|-+. -+-+.+++++|...|+.||-.+=..||.++.+-+-. .+.
T Consensus 103 VerDl~vYk~LlnvfPKgk-fiP~nv-fQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~ 178 (406)
T KOG3941|consen 103 VERDLDVYKGLLNVFPKGK-FIPQNV-FQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKV 178 (406)
T ss_pred chhhHHHHHHHHHhCcccc-cccHHH-HHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHH
Confidence 3344444444555555554 555533 33333334333 355788888888888888888888888888877653 344
Q ss_pred HHHHHHHH
Q 025226 197 MNIYEDMI 204 (256)
Q Consensus 197 ~~~~~~M~ 204 (256)
.+++-.|.
T Consensus 179 ~Rm~yWmP 186 (406)
T KOG3941|consen 179 KRMLYWMP 186 (406)
T ss_pred HHHHHhhh
Confidence 44444443
No 130
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.34 E-value=0.047 Score=48.05 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=90.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHH
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 197 (256)
...+....++|-++....+..+|+..+..|=-.|--.|++++|.+.|+.... +.| |..+||-|=..++...+.++|+
T Consensus 407 ~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAI 484 (579)
T KOG1125|consen 407 SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAI 484 (579)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHH
Confidence 3456677788888776653568999999999999999999999999999887 346 6789999999999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 198 NIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 198 ~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+-|++-++....--..=|| |-=+|...|.+++|++
T Consensus 485 sAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 485 SAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHH
Confidence 9999988763322334455 4446788999999998
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.31 E-value=0.14 Score=37.89 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
++=.-+...|++++|..+|.-+.... .-+..-|-.|=.++-..|++++|...|........ -|...+-.+=.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 45555678899999999999988776 45666677777777888999999999999887653 3667777788888899
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|+.+.|.+.|+.-...
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999876543
No 132
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=96.30 E-value=0.17 Score=45.13 Aligned_cols=123 Identities=23% Similarity=0.308 Sum_probs=85.9
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.++-..|-..|+.++|++ +++..... .|+.. +--+.+-+.|++.+|.+..+..++.. .-|.+.=+-....+
T Consensus 198 ~~lAqhyd~~g~~~~Al~-~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALE-YIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYL 272 (517)
T ss_pred HHHHHHHHHhCCHHHHHH-HHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHH
Confidence 344566778888888884 44544332 34433 34566778899999999999888887 67888888888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhH--------HHHHHHHHHcCChhHHHHHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTY--------TEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
.++|+.++|++++....+.+..|-...+ .-.-.+|.+.|++..|+.-|....
T Consensus 273 LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 273 LRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999998888876554433222 344456777888877776655443
No 133
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.18 E-value=0.035 Score=34.26 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=46.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
-..+...|++++|.+.|++..+.. | +...+..+-..+.+.|++++|...|++..+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 356788899999999999998865 5 5677888888888999999999999988754
No 134
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.13 E-value=0.48 Score=46.40 Aligned_cols=115 Identities=12% Similarity=0.166 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD---SQTYTEVIRGF 187 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~ 187 (256)
+|...|.+....++|-++++.|.+. +.-....|...+..+.+..+.++|.+++++..+. -|- +....-.+..-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 3566666666666666666666655 3445556666666666666666666666654432 122 11112222222
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 188 ~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
.+.|+.+++..+|+.....-. --...|+..|+.=.++|+.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~ 1652 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKY 1652 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHH
Confidence 345555555555555544311 123456666666666665443
No 135
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.10 E-value=0.073 Score=33.58 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=41.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
+.+.+.+++++|.++++.+.+.+ +.++..|...-..|...|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45667777888888888777775 556667777777777778888888877777763
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.08 E-value=0.19 Score=45.03 Aligned_cols=132 Identities=13% Similarity=0.027 Sum_probs=88.8
Q ss_pred HHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHhC-CCCCCH
Q 025226 112 VLIELERQ-----EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART--------GKMNEAMQVWESMRKE-DLFPDS 177 (256)
Q Consensus 112 li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~--------g~~~~a~~~~~~m~~~-g~~p~~ 177 (256)
.+++.... ++.++|..+|++..+.. .-+...|..+-.+|... .++.++.+..++.... ....+.
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 56665432 24789999999998875 33445555554444322 1233444444443332 233355
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCccccc
Q 025226 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYD 247 (256)
Q Consensus 178 ~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~ 247 (256)
..|.++--.....|++++|...+++..+.+ |+...|..+-..|...|+.++|.+ .....+.|...||.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 677777555666899999999999998886 688899999999999999999999 34455667666653
No 137
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.41 Score=38.21 Aligned_cols=123 Identities=15% Similarity=0.034 Sum_probs=96.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH--H-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--A-VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
......+.|+..+|+..+. +. ...-++|+. + +=-+|-+.|++++|..-|.+..+.. .-+...+|.+--.|.-.
T Consensus 106 ~gk~~~~~g~~~~A~~~~r-kA-~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLR-KA-ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--PNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHhcchHHHHHHHH-HH-hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--cCCchhhhhHHHHHHHc
Confidence 4667788999999986664 33 233445665 3 5556778999999999999999884 66788899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
|+.+.|+.++.+....+- -|...-..+.......|++++|..+-..-...
T Consensus 182 gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~ 231 (257)
T COG5010 182 GDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQELLS 231 (257)
T ss_pred CCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccccc
Confidence 999999999999887643 26667778888888999999999887654433
No 138
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.89 E-value=0.18 Score=37.86 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP--DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
-...|..+...+...|++++|...|++.....-.| ...+|..+-..|.+.|++++|...+++..+.. +....++..+
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~l 112 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 45667778888888999999999999987653222 23578888899999999999999999887652 2234556666
Q ss_pred HHHhc-------CCCChHHHHH
Q 025226 219 LKGLL-------PHPLLRSKVK 233 (256)
Q Consensus 219 i~~~~-------~~g~~~~a~~ 233 (256)
...+. ..|++++|..
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHH
Confidence 66666 7777775544
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=95.85 E-value=0.18 Score=46.88 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=63.3
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHH--HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELE--RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
|-.....++..+|+...-+.+++.+-.+- ..++.++. +.|..++|..+++.....+ ..|..|..++-..|...|.
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhh
Confidence 44455566666666555444443332211 12455543 4566666666666666555 3466666666667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPAD 195 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 195 (256)
.++|..+|++..+. .|+..-...+.-+|.+.+++.+
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 77777777665542 3555556666666666655543
No 140
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=95.82 E-value=0.19 Score=48.97 Aligned_cols=148 Identities=13% Similarity=0.111 Sum_probs=112.2
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccC-CCcH-HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLL-KMDI-VAVLIELERQEETILAVKIFDIIRKQDWYQPD---AYIYKDLI 149 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~y~~li 149 (256)
.+..+...|.+....++|. .+++.|.++-- .+.+ ......+.+..+-++|.+++++..+. -|- +....-..
T Consensus 1532 V~~~L~~iy~k~ek~~~A~-ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfA 1607 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEAD-ELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFA 1607 (1710)
T ss_pred HHHHHHHHHHHhhcchhHH-HHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHH
Confidence 4455677888899999997 55566655433 3332 25788888999999999999987655 333 33444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh--hHHHHHHHHhcCCCC
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE--LPFRILLKGLLPHPL 227 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~--~t~~~li~~~~~~g~ 227 (256)
..-.++|+.+.+..+|+..... .+--...|+..|+.=.+.|+.+.+..+|++....++.|-. .-|.-.++.=-++|+
T Consensus 1608 qLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1608 QLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 5556889999999999998874 1224678999999999999999999999999999887754 566777877777776
No 141
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.79 E-value=0.18 Score=41.12 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCChhHHHH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK-----SPDPPEELPFRI 217 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~-----~g~~p~~~t~~~ 217 (256)
.+++.++..+..+|+++.+.+.++++....- -|...|..+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4667788888889999999999999887421 3788999999999999999999999988764 599999999988
Q ss_pred HHHHhcCC
Q 025226 218 LLKGLLPH 225 (256)
Q Consensus 218 li~~~~~~ 225 (256)
..+...+.
T Consensus 233 y~~~~~~~ 240 (280)
T COG3629 233 YEEILRQD 240 (280)
T ss_pred HHHHhccc
Confidence 88885544
No 142
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.76 E-value=0.048 Score=50.82 Aligned_cols=107 Identities=17% Similarity=0.188 Sum_probs=87.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~ 190 (256)
+=-.++..|++++|..||.+..+.. .-+..+|-.+-++|..+|++-.|.++|+...+. .-.-++...+.|-+++-++
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 4555678899999999999999886 445568999999999999999999999976654 5566888899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
|.+.+|.+..-.-......-...-||..+-
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 999999999887776655555566765443
No 143
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.69 E-value=0.11 Score=47.40 Aligned_cols=108 Identities=17% Similarity=0.170 Sum_probs=80.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
.|.+-....++.+|+.+++.++.+. .-+.-|.-+-..|+..|+++.|+++|-+-- .++--|..|.++|
T Consensus 738 aieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 5566667788999999999988775 344567888899999999999999997632 3567788999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++++|..+-.+. .|-......|-+=..-+-++|++.+|-+
T Consensus 806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 999998876553 3334455666666666666777666655
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=95.58 E-value=0.68 Score=43.99 Aligned_cols=129 Identities=14% Similarity=0.053 Sum_probs=84.0
Q ss_pred chhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHH------------------HHHHH
Q 025226 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKI------------------FDIIR 133 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~------------------~~~m~ 133 (256)
...+..++..+...++++++....-.......-.+... .+--.+.+.++.+++..+ .+.|.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~ 110 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKIL 110 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHH
Confidence 34677788999899999999854432222222222222 111133344444444444 33333
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 134 KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 134 ~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
+.+ -+...+-++-.+|-+.|+.++|..+++++.+.. .-|....|-+-..|+.. ++++|.+++.+-.+.
T Consensus 111 ~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 111 LYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred hhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 222 233567778888888899999999999999876 34788889999999988 999999888876654
No 145
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=0.31 Score=46.22 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=65.9
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
..+..+|....+.|.+++.+ .++.+..+....|.+. .||-+|++.+++.+-+++. ..||......+=+-|
T Consensus 1134 s~y~eVi~~a~~~~~~edLv-~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi--------~gpN~A~i~~vGdrc 1204 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLV-KYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFI--------AGPNVANIQQVGDRC 1204 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHH-HHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHh--------cCCCchhHHHHhHHH
Confidence 45666788888888888887 6666667777777776 4888888888887765543 235555555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 198 (256)
...|.++.|.-+|.. +.-|..|-..+...|+++.|.+
T Consensus 1205 f~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1205 FEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 555555555544432 2234444444444455444443
No 146
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.48 E-value=0.52 Score=41.10 Aligned_cols=89 Identities=21% Similarity=0.250 Sum_probs=75.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
.+..=-..|++..|.++|+...+ ..|+...|++.|+.=.+....+.|.+++++..- ++|++.+|---.+-=-++|
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcC
Confidence 44444567999999999996653 579999999999999999999999999999876 5699999988888888889
Q ss_pred ChhHHHHHHHHHHh
Q 025226 192 SPADAMNIYEDMIK 205 (256)
Q Consensus 192 ~~~~a~~~~~~M~~ 205 (256)
++..|..+|.+..+
T Consensus 222 ~~~~aR~VyerAie 235 (677)
T KOG1915|consen 222 NVALARSVYERAIE 235 (677)
T ss_pred cHHHHHHHHHHHHH
Confidence 98888888877654
No 147
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.31 E-value=0.042 Score=35.34 Aligned_cols=61 Identities=20% Similarity=0.359 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCC-HhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKE----D-LFPD-SQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
.+|+.+-..|...|++++|.+.|++..+. | -.|+ ..+++.+-..|...|++++|.+++++-
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46677777777778888888777776642 1 1122 456677777777777777777777654
No 148
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.96 Score=39.58 Aligned_cols=126 Identities=17% Similarity=0.166 Sum_probs=94.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
+-..|....+.++..+.|++..+..+-.|| +|-.--..+.-.+++++|..=|++..+. .| +...|-.+-.+.-+.
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--vYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPD--VYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCc--hhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHH
Confidence 556678889999999999999988744444 5555555566677899999999998773 34 345555555555578
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh--hhhhcCCC
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK--DFEELFPE 242 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~--~~~~~~p~ 242 (256)
+++++++..|++-.+. ++-.+..|+..-..+...+++++|.++ ....++|+
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8999999999998876 444567788888999999999999993 33444555
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.25 E-value=0.42 Score=39.01 Aligned_cols=100 Identities=21% Similarity=0.324 Sum_probs=77.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCh
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~ 193 (256)
-+.+.+++++|+..|.+..+.. .-|.+-|..--.+|.+.|.++.|.+=-+...+ +.|. ..+|..|=.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 3567788999999999988875 67888888889999999999998877776665 3343 46788888899999999
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 194 ADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 194 ~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
++|.+.|++-.+. .|+-.+|-.=|+
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 9999998875543 666666654443
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.02 E-value=0.17 Score=31.52 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcC-ChhHHHHHHHHHH
Q 025226 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDG-SPADAMNIYEDMI 204 (256)
Q Consensus 142 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g-~~~~a~~~~~~M~ 204 (256)
+.+|..+=..+...|++++|...|++..+. .| +...|..+=.+|.+.| ++++|.+.|++-.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 345555555566666666666666665553 23 3445555555555555 4666666655543
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.00 E-value=0.66 Score=37.72 Aligned_cols=85 Identities=22% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHH
Q 025226 117 ERQEETILAVKIFDIIRKQDWYQPD----AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD----SQTYTEVIRGFL 188 (256)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~ 188 (256)
.+.|++++|...|+.+.+.. |+ ...+--+-.+|...|++++|...|+.+.+. .|+ ...+-.+...|-
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHHHHHHHHHH
Confidence 44577888888888777663 22 245556667777778888888888877652 122 222333444555
Q ss_pred HcCChhHHHHHHHHHHhC
Q 025226 189 KDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~ 206 (256)
..|+.++|..+|++..+.
T Consensus 229 ~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 229 DKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 677888888887776655
No 152
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.97 E-value=0.56 Score=38.48 Aligned_cols=151 Identities=14% Similarity=0.053 Sum_probs=105.8
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-------------CCHH------
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQ-------------PDAY------ 143 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------------p~~~------ 143 (256)
-+.|+.++|++.|-....-.|..|-.. .+--+..+.|+...|++...++.++| ++ ||+.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG-~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG-IRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh-hhcCCccCccceeccCchhcccchH
Confidence 578999999999987777889988765 66667778899999999999999888 32 3321
Q ss_pred --HHHHHHHH-------HHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChh
Q 025226 144 --IYKDLIIA-------LARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213 (256)
Q Consensus 144 --~y~~li~~-------~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~ 213 (256)
.-..++.+ +-+.|+++.|.+-+-.|+-+ .-..|.+|...+--.=. .+++-+..+=+.-+.+.+.-| ..
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP-~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP-PE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC-hH
Confidence 12233333 34669999999999999753 44567777665432211 344555555555555554434 47
Q ss_pred HHHHHHHHhcCCCChHHHHHhhhh
Q 025226 214 PFRILLKGLLPHPLLRSKVKKDFE 237 (256)
Q Consensus 214 t~~~li~~~~~~g~~~~a~~~~~~ 237 (256)
||..++--||++.-++-|.....+
T Consensus 312 TFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhh
Confidence 899999999999988888775443
No 153
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.97 E-value=0.29 Score=42.39 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=45.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDA----YIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
.+=.+|.+.|++++|+..|++-.+.. |+. .+|..+-.+|...|+.++|.+.+++..+.
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL~---Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALELN---PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC---CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677888888888888888877664 443 45888888888888888888888888774
No 154
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.71 Score=40.94 Aligned_cols=143 Identities=17% Similarity=0.066 Sum_probs=101.1
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHH---H-HHHcCCHHHHHHHHHHHHh----cCCCC-CCHHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLI---E-LERQEETILAVKIFDIIRK----QDWYQ-PDAYIYKD 147 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~---~-~~~~~~~~~a~~~~~~m~~----~~~~~-p~~~~y~~ 147 (256)
+++-..|.+.++.+-|- .|+.. ..++-|+-.-+++ . ....+.+.+|...|+.-.. .+.-+ .-..+++.
T Consensus 384 LYlgmey~~t~n~kLAe-~Ff~~--A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 384 LYLGMEYMRTNNLKLAE-KFFKQ--ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHHHHhccHHHHH-HHHHH--HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 34455778888888884 66533 3344553321111 1 1235678888888886541 11011 13456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 148 LIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
|=.+|.+.+.+++|...|++-... .+-|..|+.++=-.|...|+++.|.+.|.+-. .+.|+..+.+.++..+...
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 888999999999999999988764 23488899999999999999999999999854 5689999999888876655
No 155
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.83 E-value=0.16 Score=31.56 Aligned_cols=56 Identities=23% Similarity=0.219 Sum_probs=46.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG-KMNEAMQVWESMRK 170 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~ 170 (256)
=..+...|++++|+..|++..+.. +-+...|..+=.+|.+.| ++++|.+.|++..+
T Consensus 10 g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 10 GQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677899999999999988886 567888888988999999 79999999988765
No 156
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.76 E-value=0.91 Score=32.76 Aligned_cols=85 Identities=12% Similarity=0.091 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
..+|..+.+.+..+.....++.+.+.+ ..++..+|.+|..|++.+ .++..+.+.. .++.+....+++-|-+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 357777777788888888888887776 367778888888888764 3344444442 1345555567777777
Q ss_pred cCChhHHHHHHHHH
Q 025226 190 DGSPADAMNIYEDM 203 (256)
Q Consensus 190 ~g~~~~a~~~~~~M 203 (256)
.+.++++..++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 77777777777665
No 157
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.65 E-value=0.13 Score=46.70 Aligned_cols=118 Identities=18% Similarity=0.168 Sum_probs=87.6
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
.+++.++.+-+-..+.-..+.++.. .+=-+..+.++++.|.+-|....... .-+...||.+=.+|.+.|+-.+|...
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~ 575 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRK 575 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHH
Confidence 4666777655555555454544432 34444457788999999999877654 44567899999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 165 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
+.+..+.+ .-+-..|-.-+-.-.+.|.+++|.+.+.+|.+.
T Consensus 576 l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 576 LKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99988866 445566777777788999999999999888753
No 158
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.55 E-value=0.47 Score=41.05 Aligned_cols=115 Identities=21% Similarity=0.225 Sum_probs=77.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHhhH-HHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE-SMRKEDLFPDSQTY-TEVIRGFLK 189 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~-~~li~~~~~ 189 (256)
.|+.-.+..-++.|..+|-+..+.|-+.|++..|+++|.-++ .|+..-|.++|+ -|+.. ||+..| +-.+.-+..
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHHHHHH
Confidence 667667777788888888888888766788888888888776 456677788887 45543 555444 455556667
Q ss_pred cCChhHHHHHHHHHHhCCCCCC--hhHHHHHHHHhcCCCChHHH
Q 025226 190 DGSPADAMNIYEDMIKSPDPPE--ELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~g~~p~--~~t~~~li~~~~~~g~~~~a 231 (256)
-++-+.|..+|+.-... +.-+ ...|..+|+-=..-|++..+
T Consensus 479 inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v 521 (660)
T COG5107 479 INDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNV 521 (660)
T ss_pred hCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHH
Confidence 77777888888743322 1111 34677777777777766544
No 159
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.53 E-value=0.32 Score=44.59 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=67.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
|.+......+.+|+ .+++....+......+ -+-..|+..|+++.|+++|.+-- .++..|..|.+.|++
T Consensus 739 ieaai~akew~kai-~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAI-SILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhH-hHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccH
Confidence 33344445555554 2333344443333333 36678889999999999886532 467789999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHH
Q 025226 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
++|.++-++... -..+...|-+--.-+-+.|++.+|.+++
T Consensus 808 ~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 999999877543 2334455555555555566666665554
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.47 E-value=0.9 Score=38.05 Aligned_cols=81 Identities=12% Similarity=0.164 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
.+-+.-|.-+...|....|.++-.+.+- ||..-|-.-|.+|++.+++++-..+... +=+++-|...++.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 3455667778889999999999888765 8999999999999999999988876542 22568999999999
Q ss_pred cCCCChHHHHH
Q 025226 223 LPHPLLRSKVK 233 (256)
Q Consensus 223 ~~~g~~~~a~~ 233 (256)
.+.|...+|..
T Consensus 248 ~~~~~~~eA~~ 258 (319)
T PF04840_consen 248 LKYGNKKEASK 258 (319)
T ss_pred HHCCCHHHHHH
Confidence 99999998887
No 161
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.43 E-value=0.48 Score=29.69 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=45.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
..|.+.+++++|.++++.+... .| +...|...=..|.+.|++++|.+.|++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5678889999999999999885 24 5566677777888899999999999998866
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=94.40 E-value=1.3 Score=40.10 Aligned_cols=146 Identities=11% Similarity=0.079 Sum_probs=93.3
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHH----hcCC---------CCCCHHHHHH--HH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIR----KQDW---------YQPDAYIYKD--LI 149 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~---------~~p~~~~y~~--li 149 (256)
...+..+.++.++....++|+++-...+...|-.-...+-.+++.-.+. ..|. -+|++..|+. ++
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 4466777777888888888885433345444433222222222222222 1110 1677777765 46
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPDSQ-TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
..|-+.|+++.|....+....+ .|+.+ -|-+=-+-+...|++++|..++++-.+.. .||...=+--..-..+.++.
T Consensus 379 qh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcccc
Confidence 7788899999999999987763 35542 23333477888999999999999877652 35555544566666778888
Q ss_pred HHHHH
Q 025226 229 RSKVK 233 (256)
Q Consensus 229 ~~a~~ 233 (256)
++|.+
T Consensus 456 ~eA~~ 460 (700)
T KOG1156|consen 456 EEAEE 460 (700)
T ss_pred HHHHH
Confidence 88887
No 163
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=2.2 Score=34.49 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=86.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII-----ALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIR 185 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~-----~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~ 185 (256)
|.+.-.+.||.+.|...|++..+.. -+.|-.+++.++. .|...+++..|...|.+..... -.|-.+-=-+|+.
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHH-hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 5555567899999999999887665 4677777776654 3455688999999999888742 1122222235666
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCChhHHHH-------HHH-HhcCCCChHHHHHhhhhhcCCCccc
Q 025226 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRI-------LLK-GLLPHPLLRSKVKKDFEELFPEKHA 245 (256)
Q Consensus 186 ~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~-------li~-~~~~~g~~~~a~~~~~~~~~p~~~~ 245 (256)
.| .|+..+|...++.|++. .|...+-++ |-+ +|..+-+.+.++.-...+..||.+.
T Consensus 297 lY--lg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~tmyEL~Ys~~~~~k~~l~~~ia~~~~d~f~ 360 (366)
T KOG2796|consen 297 LY--LGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTTMYELEYSRSMQKKQALLEAVAGKEGDSFN 360 (366)
T ss_pred HH--HHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHhccCCCccc
Confidence 66 48899999999999887 344444443 333 4445556555666666777887653
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.37 E-value=0.57 Score=34.68 Aligned_cols=82 Identities=10% Similarity=-0.026 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFPDSQTY-TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
-.-+...|++++|.++|+-...- .|....| -.|=-.|-..|++++|.+.|........ -|+..+-.+-.++...|+
T Consensus 42 A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 42 AMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 34456789999999999998873 4655444 4444455568999999999999887763 577888889999999999
Q ss_pred hHHHHH
Q 025226 228 LRSKVK 233 (256)
Q Consensus 228 ~~~a~~ 233 (256)
.+.|.+
T Consensus 119 ~~~A~~ 124 (157)
T PRK15363 119 VCYAIK 124 (157)
T ss_pred HHHHHH
Confidence 999887
No 165
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.24 E-value=0.92 Score=41.04 Aligned_cols=189 Identities=14% Similarity=0.046 Sum_probs=100.1
Q ss_pred cccccCCchHHHHHHHHHhcCCC---------ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccccccc---
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS---------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLI--- 72 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~---------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~--- 72 (256)
.|-++|+.+.|..+|+.-.+.+. |...-..=.++.+++.+ +++.+........+....+....
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A-----l~lm~~A~~vP~~~~~~~yd~~~pvQ 470 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA-----LKLMRRATHVPTNPELEYYDNSEPVQ 470 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH-----HHHHHhhhcCCCchhhhhhcCCCcHH
Confidence 46788999999999998776654 22222222334444444 55444333222111111111100
Q ss_pred ------chhHHHHHHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH-H
Q 025226 73 ------GKEALFVILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIVA-VLIELERQEETILAVKIFDIIRKQDWYQPDA-Y 143 (256)
Q Consensus 73 ------~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~ 143 (256)
...|...+.---..|-++.. ..+++.+.. +...|.+.. .-..+-.+.-+++++++|+.-...- --|++ .
T Consensus 471 ~rlhrSlkiWs~y~DleEs~gtfest-k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF-k~p~v~d 548 (835)
T KOG2047|consen 471 ARLHRSLKIWSMYADLEESLGTFEST-KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF-KWPNVYD 548 (835)
T ss_pred HHHHHhHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC-CCccHHH
Confidence 01222222211223333333 234444433 334444331 1112234456899999999877664 23444 4
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHH
Q 025226 144 IYKDLIIALART---GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPADAMNIYEDM 203 (256)
Q Consensus 144 ~y~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M 203 (256)
.||+-+.-+.+. ..++.|..+|++..+ |++|...- ++--.|++ .|....|+.++++-
T Consensus 549 iW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aK--tiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 549 IWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAK--TIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHH--HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677777666653 579999999999988 77665433 23333433 57778888888773
No 166
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=2.4 Score=36.48 Aligned_cols=144 Identities=12% Similarity=0.093 Sum_probs=81.7
Q ss_pred hhcCCCcHHHHHHHHHHHhh-ccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHHhcCCH
Q 025226 83 LKRFKDDEEKLQKFIKTHVL-RLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL--IIALARTGKM 158 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l--i~~~~~~g~~ 158 (256)
+...+++++|+-.| +.... +....+++ -|+..|.-.|.+++|.-.-++..+. +.-+..+.+.+ .-.+-...--
T Consensus 344 L~~~~R~~~A~IaF-R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 344 LIALERHTQAVIAF-RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHhccchHHHHHHH-HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhH
Confidence 34556666665333 22211 11222333 3666666666666666665554433 23333333332 1111112224
Q ss_pred HHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 159 NEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++|.+++++-.+ +.|+- ..-+.+-.-+...|..+++..++++-... .||....+.|-+-+...+++.++++
T Consensus 421 EKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 421 EKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHH
Confidence 566666665443 34553 23345555566778888888888876655 6888888888888888888888877
No 167
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=94.06 E-value=1.5 Score=39.92 Aligned_cols=212 Identities=14% Similarity=0.053 Sum_probs=118.8
Q ss_pred ccccccccCCchHHHHHHHHHhcCCC----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHH
Q 025226 2 ATRLFSRSKIPILASIVLQNLTKNPS----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEAL 77 (256)
Q Consensus 2 ~i~~~~~~~~~~~A~~l~~~m~~~~~----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 77 (256)
|+..-.++..++.|..+|..-+..+. |-.-.+--.-.++.+++ ++++++..+.-+.. ..-|.
T Consensus 624 avKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA-----~rllEe~lk~fp~f---------~Kl~l 689 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA-----LRLLEEALKSFPDF---------HKLWL 689 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH-----HHHHHHHHHhCCch---------HHHHH
Confidence 34455666677777777776654332 22111111112333444 44443333221111 22233
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+=..+-+.++.+.|.+.+..-. ...|+.. .|-+.=-+.|.+-.|..+++.-...+ .-+...|-..|..=.
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN--Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN--PKNALLWLESIRMEL 764 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC--CCcchhHHHHHHHHH
Confidence 33344455566665554333211 1223333 33344446678888999998887776 678888888888888
Q ss_pred hcCCHHHHHHHHHHHHhC----C-------------------------CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 154 RTGKMNEAMQVWESMRKE----D-------------------------LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~----g-------------------------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+.|..+.|..+..+..+. | +.-|....-++-..|-...++++|.+.|.+-+
T Consensus 765 R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888776655432 2 11222222333334444566788888888877
Q ss_pred hCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 205 KSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 205 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+.+ .-+..+|.-+..-+.++|.-++-.+
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHH
Confidence 652 3355788888888888887665555
No 168
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.06 E-value=2.5 Score=40.42 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=35.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
++-.+|-+.|+.++|..+++++.+.. .-|+.+-|.+-..|+.. ++++|.+++.+...
T Consensus 121 ~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 121 TLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 45556666666666666666666665 45666666666666666 66666655555443
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.90 E-value=1.3 Score=36.06 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCChhHH
Q 025226 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS----QTYTEVIRGFLKDGSPADAMNIYEDMIKS--PDPPEELPF 215 (256)
Q Consensus 142 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~M~~~--g~~p~~~t~ 215 (256)
...|+..+..+.+.|++++|...|+.+.+. .|+. ..+-.+-..|...|++++|...|....+. +-......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 466788887778889999999999999874 3554 35667778888999999999999999865 111123333
Q ss_pred HHHHHHhcCCCChHHHHHh
Q 025226 216 RILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~ 234 (256)
-.+...+...|+.++|.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~ 239 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAV 239 (263)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4455567788999999883
No 170
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.81 E-value=2.2 Score=39.11 Aligned_cols=153 Identities=10% Similarity=0.013 Sum_probs=104.7
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHH-HHHHH----------------------------HHcCCHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA-VLIEL----------------------------ERQEETILA 125 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-li~~~----------------------------~~~~~~~~a 125 (256)
.|.-+|..|+..|+..+|- .+...-.++.-.|-.+. +.+.. .+.++++++
T Consensus 426 mw~~vi~CY~~lg~~~kae-ei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~ 504 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAE-EINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA 504 (777)
T ss_pred HHHHHHHHHHHhcccchHH-HHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence 5566788999999888875 44433333222222221 22221 123556666
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
.+.|+.-.+.. ..-..+|=.+=.+..+.++++.|.+-|..... ..|| ...||.+=.+|.+.|+-.+|...+.+-.
T Consensus 505 ~~hle~sl~~n--plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 505 DKHLERSLEIN--PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHhhcC--ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 66666544443 33444555555566677899999999998776 4575 4789999999999999999999999988
Q ss_pred hCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 205 KSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 205 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+-+ .-+...|....-...+-|.+++|++
T Consensus 581 Kcn-~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 581 KCN-YQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred hcC-CCCCeeeechhhhhhhcccHHHHHH
Confidence 876 5556677777777788899999888
No 171
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=93.69 E-value=1.8 Score=40.55 Aligned_cols=130 Identities=18% Similarity=0.209 Sum_probs=86.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL--ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
...++++.+|++-.+.+.+.. |+. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...|+.
T Consensus 19 ~ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 345677888888888776654 332 344444444 4678888888888876665544 788888888888888888
Q ss_pred hHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhh-hhcCCCcccccchhHh
Q 025226 194 ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDF-EELFPEKHAYDPPEEI 252 (256)
Q Consensus 194 ~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~-~~~~p~~~~~~~li~~ 252 (256)
++|..+|++..+. -|+......+..+|.+.+++.+.-+ |.. +...-+++.|=+.++.
T Consensus 94 d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Sl 153 (932)
T KOG2053|consen 94 DEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISL 153 (932)
T ss_pred hHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHH
Confidence 8888888886654 5677777788888888887766444 333 3333334444344443
No 172
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.56 E-value=0.24 Score=31.70 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=42.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 112 VLIELERQEETILAVKIFDIIRKQ----DWYQPD-AYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+=..|...|++++|+..|++..+. |.-.|+ ..+++.+-..|...|++++|.+.+++-.+
T Consensus 11 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 11 LARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555677888888888888876532 211233 56788888888899999999999887653
No 173
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.51 E-value=3 Score=37.23 Aligned_cols=132 Identities=17% Similarity=0.146 Sum_probs=97.1
Q ss_pred HHHHHHHHhhcc--CCCcHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 93 LQKFIKTHVLRL--LKMDIVAVLIEL-ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 93 ~~~~~~~~~~~~--~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
.+.|++.....+ +.||+.+.|..+ --.|++++|...|+...... +-|-.+||-|=..++...+.++|++-|.+.+
T Consensus 414 ~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 414 QELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred HHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 345666566666 667777655554 45789999999999888775 5677899999999999999999999999988
Q ss_pred hCCCCCCH--hhHHHHHHHHHHcCChhHHHHHHHHH---HhC------CCCCChhHHHHHHHHhcCCCChH
Q 025226 170 KEDLFPDS--QTYTEVIRGFLKDGSPADAMNIYEDM---IKS------PDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 170 ~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~M---~~~------g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+ ++|+- +-||.-| +|...|.+++|...|=+- .+. +..++...|.+|=.++.-.++.|
T Consensus 492 q--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 492 Q--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred h--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 7 56763 4566555 467899999999888653 332 23345567777766666555544
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.48 E-value=1.5 Score=39.43 Aligned_cols=89 Identities=18% Similarity=0.112 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYED 202 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 202 (256)
..+.+.............+...|.++--.....|++++|...+++..+.+ |+...|..+-..|...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433321024456788888666667899999999999998854 8889999999999999999999999998
Q ss_pred HHhCCCCCChhHH
Q 025226 203 MIKSPDPPEELPF 215 (256)
Q Consensus 203 M~~~g~~p~~~t~ 215 (256)
-... .|...||
T Consensus 479 A~~L--~P~~pt~ 489 (517)
T PRK10153 479 AFNL--RPGENTL 489 (517)
T ss_pred HHhc--CCCCchH
Confidence 7665 4454454
No 175
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.43 E-value=1.1 Score=36.61 Aligned_cols=74 Identities=14% Similarity=0.137 Sum_probs=66.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-----EDLFPDSQTYTEVIRG 186 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li~~ 186 (256)
++.++...|+++.+.+.++++.... .-+...|..+|.+|.+.|+...|.+.|+++.+ .|+.|-..+.......
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 7788888999999999999999997 78999999999999999999999999999886 4899998888877776
Q ss_pred H
Q 025226 187 F 187 (256)
Q Consensus 187 ~ 187 (256)
.
T Consensus 237 ~ 237 (280)
T COG3629 237 L 237 (280)
T ss_pred h
Confidence 3
No 176
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=3.6 Score=33.06 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=72.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMN 198 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 198 (256)
.|+.++|.++++.+.+.. +.|.++|--=|...-..|+--+|.+-+.+..+. +.-|...|.-+-.-|...|++++|.-
T Consensus 99 ~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~f 175 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAF 175 (289)
T ss_pred hhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHH
Confidence 577888888888888776 677777776666666667767777777766653 45688888888888888888888888
Q ss_pred HHHHHHhCCCCCCh-hHHHHHHHHhcCCC
Q 025226 199 IYEDMIKSPDPPEE-LPFRILLKGLLPHP 226 (256)
Q Consensus 199 ~~~~M~~~g~~p~~-~t~~~li~~~~~~g 226 (256)
.+++|.-. .|.. .-|-.+-+.+.-.|
T Consensus 176 ClEE~ll~--~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 176 CLEELLLI--QPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHHh
Confidence 88888765 3333 33334555444444
No 177
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.22 E-value=0.034 Score=40.52 Aligned_cols=85 Identities=11% Similarity=0.218 Sum_probs=57.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+|..+.+.+.++.....++.+.+.+ ..-+....|.++..|++.+..++..++++. .+.+-...+++.|-+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 46777777888888888888888776 456788888889999988877787777772 1223334555566666
Q ss_pred CChhHHHHHHHHH
Q 025226 191 GSPADAMNIYEDM 203 (256)
Q Consensus 191 g~~~~a~~~~~~M 203 (256)
|.+++|.-++.++
T Consensus 84 ~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 84 GLYEEAVYLYSKL 96 (143)
T ss_dssp TSHHHHHHHHHCC
T ss_pred chHHHHHHHHHHc
Confidence 6666666666554
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=3 Score=34.14 Aligned_cols=92 Identities=11% Similarity=0.013 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART---GKMNEAMQVWESMRKEDLFP-DSQTYTEVIRG 186 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~ 186 (256)
-|=..|...|+++.|..-|..-.+.- .+++..+..+-.++... ..-.++..+|+++... .| |+..-.-|-..
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~lLA~~ 236 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLA--GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALSLLAFA 236 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 45566666666666666666666553 44555555554444433 2345566666666653 23 33334444445
Q ss_pred HHHcCChhHHHHHHHHHHhC
Q 025226 187 FLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M~~~ 206 (256)
+...|++.+|...|+.|.+.
T Consensus 237 afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 237 AFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHcccHHHHHHHHHHHHhc
Confidence 56666666666666666665
No 179
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.11 E-value=1.1 Score=32.27 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
.+..++.+...|+-|.-.++..++.+ +-.|+....-.+-.+|.+.|+..++-+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34444444444555555555554443 1224444444444555555555555555554444443
No 180
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.07 E-value=1.7 Score=37.83 Aligned_cols=60 Identities=15% Similarity=0.052 Sum_probs=42.9
Q ss_pred chhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCc-------HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 025226 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMD-------IVAVLIELERQEETILAVKIFDIIRKQ 135 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~a~~~~~~m~~~ 135 (256)
...+..+-.+|.+.|++++|+..+-+.+.. .|+ .+.+-.+|.+.|++++|++.+.+..+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666677888899999998655433322 343 235777888899999999999988865
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.04 E-value=0.71 Score=37.73 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHH
Q 025226 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYED 202 (256)
Q Consensus 124 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~ 202 (256)
+....-++++..| .-+.+.+++++|+..|.+..+ +.| |.+-|..=-.+|++.|+.+.|++=.+.
T Consensus 76 e~~~~AE~LK~eG-------------N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~ 140 (304)
T KOG0553|consen 76 EDKALAESLKNEG-------------NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCES 140 (304)
T ss_pred hHHHHHHHHHHHH-------------HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 4555566666666 345678999999999999887 445 567777888899999999999988777
Q ss_pred HHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCccccc
Q 025226 203 MIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYD 247 (256)
Q Consensus 203 M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~ 247 (256)
-.... .-...+|..|=.+|...|++++|++ .+.-.+.|+-.+|-
T Consensus 141 Al~iD-p~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K 186 (304)
T KOG0553|consen 141 ALSID-PHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYK 186 (304)
T ss_pred HHhcC-hHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHH
Confidence 66541 1135678888889999999999998 45566677766653
No 182
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.89 E-value=3.2 Score=39.84 Aligned_cols=112 Identities=18% Similarity=0.125 Sum_probs=67.2
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.|..+-.+-.+.+...+|++.+++ .-.|+.+ .+|+...+.|.+++-.+.+...++.. -.|. .=+.||-+|+
T Consensus 1106 vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~-~E~~--id~eLi~AyA 1177 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV-REPY--IDSELIFAYA 1177 (1666)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh-cCcc--chHHHHHHHH
Confidence 455555555556666666654431 1123333 47777777777777777766655554 3443 3356777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
+.+++.+.+++..- ||+.-...+=+-|...|.++.|.-+|.
T Consensus 1178 kt~rl~elE~fi~g-------pN~A~i~~vGdrcf~~~~y~aAkl~y~ 1218 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAG-------PNVANIQQVGDRCFEEKMYEAAKLLYS 1218 (1666)
T ss_pred HhchHHHHHHHhcC-------CCchhHHHHhHHHhhhhhhHHHHHHHH
Confidence 77777766655432 666666666666666666666665554
No 183
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=1.6 Score=36.82 Aligned_cols=153 Identities=11% Similarity=0.126 Sum_probs=101.6
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH--HHHHHH-----HH----cCCHHHHHHHHHHHHhcCCCCCCH-
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--AVLIEL-----ER----QEETILAVKIFDIIRKQDWYQPDA- 142 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~li~~~-----~~----~~~~~~a~~~~~~m~~~~~~~p~~- 142 (256)
.-..++.-|.+++++++|.. +.++ +.|..- =++.+. .+ ...++-|.+.|+-.-+++ ..-|+
T Consensus 287 ARlNL~iYyL~q~dVqeA~~-L~Kd-----l~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa-~ecDTI 359 (557)
T KOG3785|consen 287 ARLNLIIYYLNQNDVQEAIS-LCKD-----LDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESA-LECDTI 359 (557)
T ss_pred hhhhheeeecccccHHHHHH-HHhh-----cCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccc-cccccc
Confidence 44455667889999999973 4332 334322 133332 22 124677888888777776 33333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHH-HHHHH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR-ILLKG 221 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~-~li~~ 221 (256)
.--.++-+.+.-...+|+..-.++....-=..-|..-|| +-.+++..|+..+|.++|-+.....++ |..+|. .|.++
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArC 437 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARC 437 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHH
Confidence 234456666677778899988888887654445566655 568889999999999999877655554 445554 66788
Q ss_pred hcCCCChHHHHHhhh
Q 025226 222 LLPHPLLRSKVKKDF 236 (256)
Q Consensus 222 ~~~~g~~~~a~~~~~ 236 (256)
|.++|..+-|.+|..
T Consensus 438 yi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMML 452 (557)
T ss_pred HHhcCCchHHHHHHH
Confidence 999999888888544
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=92.75 E-value=4.7 Score=33.03 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=74.0
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHh--h
Q 025226 112 VLIELERQ-EETILAVKIFDIIRKQ----DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-----DSQ--T 179 (256)
Q Consensus 112 li~~~~~~-~~~~~a~~~~~~m~~~----~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~--t 179 (256)
+=..|-.. |++++|.+.|++-.+. |...--..++.-+...+.+.|++++|.++|++....-... ++. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34445556 7999999999876533 3111123566777888899999999999999987653222 222 2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCC--hhHHHHHHHHhcCCC--ChHHHHH
Q 025226 180 YTEVIRGFLKDGSPADAMNIYEDMIKS--PDPPE--ELPFRILLKGLLPHP--LLRSKVK 233 (256)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~M~~~--g~~p~--~~t~~~li~~~~~~g--~~~~a~~ 233 (256)
++++| .+...|++..|.+.|++.... ++..+ ......||.+|-... .+.+++.
T Consensus 200 l~a~l-~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~ 258 (282)
T PF14938_consen 200 LKAIL-CHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVA 258 (282)
T ss_dssp HHHHH-HHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCH
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 24444 445578999999999998754 44333 445567777776543 4444444
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.65 E-value=4.5 Score=32.48 Aligned_cols=152 Identities=11% Similarity=0.076 Sum_probs=96.4
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
...+.+.|+.++|+..| +.....--.+... .+..++.+.+++++|...|++..+..+-.|+ .-|.-.+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f-~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~ 116 (243)
T PRK10866 39 AQQKLQDGNWKQAITQL-EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHCCCHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhh
Confidence 44556789999998655 4444422222222 3677888999999999999999988633333 355555555442
Q ss_pred --c---------------CC---HHHHHHHHHHHHhC----CCCCCHhhHH------------HHHHHHHHcCChhHHHH
Q 025226 155 --T---------------GK---MNEAMQVWESMRKE----DLFPDSQTYT------------EVIRGFLKDGSPADAMN 198 (256)
Q Consensus 155 --~---------------g~---~~~a~~~~~~m~~~----g~~p~~~t~~------------~li~~~~~~g~~~~a~~ 198 (256)
. .+ ..+|...|+++.+. ...|+....- .+-+-|-+.|.+.-|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~ 196 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVN 196 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence 0 12 34555666666553 1222222211 23334788888888888
Q ss_pred HHHHHHhC--CCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 199 IYEDMIKS--PDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 199 ~~~~M~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
-|+.+.+. +-+......-.++++|.+.|..++|..
T Consensus 197 r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 197 RVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 88888875 455566666788889988888887765
No 186
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.53 E-value=1.8 Score=31.20 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
--..+|..+...+..+....+++.+...+. .+....|.+|..|++.+ .++..+++.
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 345788888888999999999999988773 68889999999999864 455666666
No 187
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.43 E-value=1.4 Score=39.14 Aligned_cols=156 Identities=15% Similarity=0.006 Sum_probs=95.4
Q ss_pred cccccccCCchHHHHHHHHHhcCC-C-----------ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccccc
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNP-S-----------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKK 70 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~-~-----------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~ 70 (256)
++.++=+|+.+.+++++..-.+.+ + |...+..+..... .......+..++..+...-|....+.+.
T Consensus 195 l~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~-~~~~~~~a~~lL~~~~~~yP~s~lfl~~- 272 (468)
T PF10300_consen 195 LSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG-EDVPLEEAEELLEEMLKRYPNSALFLFF- 272 (468)
T ss_pred HhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc-cCCCHHHHHHHHHHHHHhCCCcHHHHHH-
Confidence 345666789999999888765543 3 5555544443311 1222222366666666554444222211
Q ss_pred ccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 025226 71 LIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145 (256)
Q Consensus 71 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y 145 (256)
.-..+...|++++|++.+-+......--+... -+.-.+.-.+++++|.+.|..+.+.. ..+..+|
T Consensus 273 --------~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~WSka~Y 342 (468)
T PF10300_consen 273 --------EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--KWSKAFY 342 (468)
T ss_pred --------HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--ccHHHHH
Confidence 12334678999999865543232111112221 36666788899999999999999886 6777777
Q ss_pred HHHHHHH-HhcCCH-------HHHHHHHHHHHh
Q 025226 146 KDLIIAL-ARTGKM-------NEAMQVWESMRK 170 (256)
Q Consensus 146 ~~li~~~-~~~g~~-------~~a~~~~~~m~~ 170 (256)
.-+..+| ...|+. ++|.++|.+...
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 7775554 455767 889999988764
No 188
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=92.30 E-value=3.4 Score=30.24 Aligned_cols=47 Identities=11% Similarity=0.218 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 178 QTYTEVIRGFLKDGS-PADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 178 ~t~~~li~~~~~~g~-~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
.+|++++.+.++..- ---+..+|+-|++.+.+++..-|..+|.++.+
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 345555555543333 22344445555554455555555555554443
No 189
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.06 E-value=3.4 Score=29.78 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=46.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (256)
..|+.+.+.|.-++-.++++++.+.+ .+++...-.+-.+|.+-|+..++.+++.+..+.|++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~--~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE--EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 36888888888888889999888765 788888888899999999999999999998888763
No 190
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.89 E-value=2.3 Score=38.11 Aligned_cols=118 Identities=14% Similarity=0.117 Sum_probs=76.3
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH--HH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA----VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD--LI 149 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~--li 149 (256)
..+-++.+...+++++|+... ......+ ||-.+ =+-++.+.+.+++|+.+.+. . +-..+++. +=
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~-~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~----~~~~~~~~~~fE 84 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTA-NKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---N----GALLVINSFFFE 84 (652)
T ss_pred HHHHHHHhccchHHHHHHHHH-HHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---c----chhhhcchhhHH
Confidence 344477788889999988555 3443333 55443 34455677888988844432 2 22233333 36
Q ss_pred HHHH--hcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 025226 150 IALA--RTGKMNEAMQVWESMRKEDLFPDSQ-TYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 150 ~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
.+|| +.+..|+|...++ |+.++.. +-..=-.-+-+.|++++|+.+|..+.+++.
T Consensus 85 KAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~ 141 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS 141 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 6776 4588999999888 3444433 444444456678999999999999988854
No 191
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=91.77 E-value=7.6 Score=35.36 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=84.0
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHH----HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVL----IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+++..+-+.|+.+.|. .+++.. -+..|+.+-+- +.+...|+++.|..++++..+.. .||...=.--..-.
T Consensus 375 y~laqh~D~~g~~~~A~-~yId~A--IdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVAL-EYIDLA--IDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHcccHHHHH-HHHHHH--hccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence 34567778889888886 455543 34557666444 66788899999999999999887 77777666777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH----------HHHHHcCChhHHHHHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI----------RGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li----------~~~~~~g~~~~a~~~~~~M~ 204 (256)
.++++.++|.++.....+.|. +...+-+-+ .+|.+.|++-.|+.=|....
T Consensus 450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 888999999999998888765 333332222 23556666666655554443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=91.75 E-value=2.9 Score=31.21 Aligned_cols=89 Identities=13% Similarity=-0.035 Sum_probs=66.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
--+...|++++|..+|.-+.-.+ ..+..-|..|-.++-..+++++|...|...-..+. -|...+-..=..|...|+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence 33457899999999999888776 34555567777777788999999999997665433 2333344455667788999
Q ss_pred hHHHHHHHHHHh
Q 025226 194 ADAMNIYEDMIK 205 (256)
Q Consensus 194 ~~a~~~~~~M~~ 205 (256)
+.|...|..-.+
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 999999987766
No 193
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.73 E-value=3.7 Score=29.55 Aligned_cols=102 Identities=16% Similarity=0.041 Sum_probs=74.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH---hhHHHHHHHHHHc
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDS---QTYTEVIRGFLKD 190 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~t~~~li~~~~~~ 190 (256)
+++..|+++.|++.|.+-... +.-....||.--.++--.|+.++|.+=+++..+. |-+ +. ..|..=-.-|-..
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 456789999999999998876 4668889999999999999999999999988874 432 22 2222222335567
Q ss_pred CChhHHHHHHHHHHhCC----------CCCChhHHHHHH
Q 025226 191 GSPADAMNIYEDMIKSP----------DPPEELPFRILL 219 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g----------~~p~~~t~~~li 219 (256)
|+-+.|..=|+.-.+.| +.|-...+|-|+
T Consensus 129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 88888888887766655 445555555444
No 194
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.46 E-value=4.2 Score=29.62 Aligned_cols=43 Identities=14% Similarity=0.097 Sum_probs=24.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
++.++.+.+++++|...+++..+.++-.| -+-|-..+.+++..
T Consensus 53 l~yayy~~~~y~~A~a~~~rFirLhP~hp-~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 53 LAYAYYKQGDYEEAIAAYDRFIRLHPTHP-NVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCCC-CccHHHHHHHHHHH
Confidence 66666666666666666666666652223 24455555555443
No 195
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.34 E-value=6.6 Score=31.63 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHHH---HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
.|+.++|. .+++...+.. +.|..+ =|...-..|.-.+|++-+++..+. +.-|...|--+-..|...|++++|.
T Consensus 99 ~~~~~~A~-e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 99 TGNYKEAI-EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhchhhHH-HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 45666665 3444444444 223331 222333345555777777777766 5778888888888888888888888
Q ss_pred HHHHHHHhCCCCCCHhhHH-HHHHH---HHHcCChhHHHHHHHHHHhCCC
Q 025226 163 QVWESMRKEDLFPDSQTYT-EVIRG---FLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~-~li~~---~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
=.++++.- +.|....|. .+-.. -+...+.+-|...|.+-.+.+.
T Consensus 175 fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 175 FCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 88888876 346554443 22222 2223366678888888777633
No 196
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=7.7 Score=34.20 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=91.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
.+.+=.++..+..|..+|+.....- ...| ..|--.+..=-..|++..|.++|++..+ ..||...|++.|..=.+-.
T Consensus 113 Yae~Emknk~vNhARNv~dRAvt~l-PRVd-qlWyKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk 188 (677)
T KOG1915|consen 113 YAEFEMKNKQVNHARNVWDRAVTIL-PRVD-QLWYKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK 188 (677)
T ss_pred HHHHHHhhhhHhHHHHHHHHHHHhc-chHH-HHHHHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh
Confidence 5666678889999999999887663 2333 3344444555567999999999999887 5699999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+++.|..++++.+-- .|+..+|--..+==-++|.+..+..
T Consensus 189 eieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~ 228 (677)
T KOG1915|consen 189 EIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARS 228 (677)
T ss_pred HHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999998765 4899998887777777777665544
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.15 E-value=5.7 Score=30.55 Aligned_cols=118 Identities=19% Similarity=0.075 Sum_probs=90.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE---DLFPDSQTYTEVIRGF 187 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~ 187 (256)
.|-+++...|+..+|...|++-..-- +-.|....-.+-.+....+++.+|...++.+-+. +-.||. --.+-+.|
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~-fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~l 170 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGI-FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTL 170 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccc-cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHH
Confidence 58899999999999999999977443 7888888888888888999999999999988774 334443 33455778
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 188 ~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
...|+..+|..-|+..... -|+..--.-.-.-+.+.|+.+++..
T Consensus 171 aa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 171 AAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 8889999999999988765 4444444444555677777676655
No 198
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.08 E-value=2 Score=29.23 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=58.4
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHH
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
.-++|..|-+++...+ .-...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-.+ +.|..+++..-+
T Consensus 20 cHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce~--rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCEW--RLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHHH--hhccHHHHHHHH
Confidence 3577777777777555 1133333344566778888888888887774 4888888776543 677777777777
Q ss_pred HHHHhCCCCCChhHHH
Q 025226 201 EDMIKSPDPPEELPFR 216 (256)
Q Consensus 201 ~~M~~~g~~p~~~t~~ 216 (256)
.+|...| .|...+|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7887775 34445544
No 199
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.05 E-value=1.4 Score=36.34 Aligned_cols=119 Identities=10% Similarity=0.037 Sum_probs=78.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHH-HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIE-LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~-~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
..+-+.+.+.+|+ .+...|... |+.. .+=.+ ....+|+-.+..+.++....| +..+-+..-...-+.
T Consensus 86 QSLY~A~i~ADAL-rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 86 QSLYKACIYADAL-RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHhcccHHHH-HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeecc
Confidence 4455666777776 343444321 2222 12111 234678888888888877655 333444444445688
Q ss_pred CCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 025226 156 GKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 209 (256)
|.+++|.+-|++..+. |.. ....||.-+..|. .|+.+.|+....+..++|++
T Consensus 158 gqyEaAvqkFqaAlqvsGyq-pllAYniALaHy~-~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHYS-SRQYASALKHISEIIERGIR 210 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhh
Confidence 9999999999988875 665 4678999888875 58899999999998887643
No 200
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.80 E-value=0.76 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=12.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 025226 145 YKDLIIALARTGKMNEAMQVWES 167 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~ 167 (256)
|+.|-..|.+.|++++|.++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555555666666666666655
No 201
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.22 E-value=13 Score=33.09 Aligned_cols=150 Identities=12% Similarity=0.060 Sum_probs=94.4
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH--------HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCC
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--------AVLIELER----QEETILAVKIFDIIRKQDWYQPD 141 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~ 141 (256)
.....++....=.|+=+.++..+.......++.-... .++..++. ..+.+.|.++++++.++ -|+
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~ 265 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPN 265 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCC
Confidence 3555556666667888888866655444444433322 13333333 45789999999999987 488
Q ss_pred HHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCC--C-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCChhHHH
Q 025226 142 AYIYKDLIIA-LARTGKMNEAMQVWESMRKED--L-FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS-PDPPEELPFR 216 (256)
Q Consensus 142 ~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~-g~~p~~~t~~ 216 (256)
...|.-.-.- +...|++++|.+.|++..... . +.....+=-+.-.+.-.+++++|.+.|.++.+. .+ +..+|.
T Consensus 266 s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska~Y~ 343 (468)
T PF10300_consen 266 SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKAFYA 343 (468)
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHHHHH
Confidence 8888766544 455699999999999765421 0 112233333444466689999999999999875 44 444554
Q ss_pred HHHHHh-cCCCCh
Q 025226 217 ILLKGL-LPHPLL 228 (256)
Q Consensus 217 ~li~~~-~~~g~~ 228 (256)
-+.-+| ...|+.
T Consensus 344 Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 344 YLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhhccc
Confidence 433333 355655
No 202
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=90.22 E-value=5.7 Score=29.04 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=71.3
Q ss_pred HhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 025226 100 HVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDW----YQPDAYIYKDLIIALARTGK-MNEAMQVWESMR 169 (256)
Q Consensus 100 ~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~----~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~ 169 (256)
|.+.+..+++. .+|+-.+.-+++....++++.+..... -..+...|++++.+.++... ---+..+|+-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 45556666665 366666777888888888888753320 03455689999999988877 455678999999
Q ss_pred hCCCCCCHhhHHHHHHHHHHcCChhHHH
Q 025226 170 KEDLFPDSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 170 ~~g~~p~~~t~~~li~~~~~~g~~~~a~ 197 (256)
+.+.+++..-|..+|.++.+. ...+..
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g-~~~~~~ 134 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRG-YFHDSL 134 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcC-CCCcch
Confidence 989999999999999997664 443333
No 203
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.77 E-value=4.7 Score=33.54 Aligned_cols=93 Identities=20% Similarity=0.241 Sum_probs=60.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 113 LIELERQEETILAVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
+..-....+++.++..+-.++++. |..|+...|+ .+. ++-.-+.+++..++..=.+-|+-||..|++.+|+.+.+.
T Consensus 71 V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~ 148 (418)
T KOG4570|consen 71 VDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKK 148 (418)
T ss_pred hhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHH-HHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhc
Confidence 333334456777777777776553 1233322221 222 223345678888888777788888888888888888888
Q ss_pred CChhHHHHHHHHHHhCC
Q 025226 191 GSPADAMNIYEDMIKSP 207 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g 207 (256)
++..+|.++--.|...+
T Consensus 149 ~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 149 ENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 88888888777766553
No 204
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.73 E-value=0.84 Score=24.38 Aligned_cols=26 Identities=19% Similarity=0.370 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 179 TYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 179 t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+|+.|=..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788889999999999999999854
No 205
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=89.63 E-value=10 Score=31.07 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=90.4
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhh---ccCCCcHH-H---HHHHHHHcCCHHHHHHHHHHHH----hcCCCCCCH--HH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIV-A---VLIELERQEETILAVKIFDIIR----KQDWYQPDA--YI 144 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~-~---li~~~~~~~~~~~a~~~~~~m~----~~~~~~p~~--~~ 144 (256)
..-+.|...+++++|.+.+.+.... .+-..+.. . ....| +..++++|.+.+++.. +.| .|+. .+
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G--~~~~aA~~ 116 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAG--RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT---HHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 3456777888999888666544322 12211111 1 33334 4448888888888754 445 3333 46
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC-----CCCh
Q 025226 145 YKDLIIALART-GKMNEAMQVWESMRKE----DLFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-----PPEE 212 (256)
Q Consensus 145 y~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~-----~p~~ 212 (256)
+..+-..|-.. |++++|.+.|++..+. | .+. ..++..+...+.+.|++++|.++|++....-. +++.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 66677777777 8999999999987652 3 221 35677888889999999999999999875422 2333
Q ss_pred h--HHHHHHHHhcCCCChHHHHH
Q 025226 213 L--PFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 213 ~--t~~~li~~~~~~g~~~~a~~ 233 (256)
. .+.++| ++...|+.-.|-+
T Consensus 196 ~~~~l~a~l-~~L~~~D~v~A~~ 217 (282)
T PF14938_consen 196 KEYFLKAIL-CHLAMGDYVAARK 217 (282)
T ss_dssp HHHHHHHHH-HHHHTT-HHHHHH
T ss_pred HHHHHHHHH-HHHHcCCHHHHHH
Confidence 2 234555 4444577666655
No 206
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.58 E-value=16 Score=35.25 Aligned_cols=151 Identities=13% Similarity=-0.013 Sum_probs=93.0
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQ----DWYQPDAYIYKDLII 150 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~~y~~li~ 150 (256)
.+...|+.+++.. ..+......-..+.. .+-..+...|++++|...+.+.... |...+...+++.+-.
T Consensus 461 ~~~~~g~~~~A~~-~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAER-LAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHH-HHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3456888888874 434433321111111 1334456789999999999887643 211112345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCC--ChhHHHHHH
Q 025226 151 ALARTGKMNEAMQVWESMRKE----DLF--P-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS--PDPP--EELPFRILL 219 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~--g~~p--~~~t~~~li 219 (256)
.+...|++++|...+++.... +.. | ....+..+-..+...|++++|.+.+.+.... ...| ....+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 778899999999998886652 221 1 2233445555566789999999999887543 1112 233444566
Q ss_pred HHhcCCCChHHHHH
Q 025226 220 KGLLPHPLLRSKVK 233 (256)
Q Consensus 220 ~~~~~~g~~~~a~~ 233 (256)
..+...|+.++|.+
T Consensus 620 ~~~~~~G~~~~A~~ 633 (903)
T PRK04841 620 KISLARGDLDNARR 633 (903)
T ss_pred HHHHHcCCHHHHHH
Confidence 67778899888876
No 207
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.41 E-value=0.13 Score=37.36 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=57.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 147 DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
.+|..|.+.+..+....+++.+...+-.-+....|.++..|++.+..++..++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 35677777888899999999999877667889999999999999988999988872 12233345556666666
Q ss_pred ChHHHHH
Q 025226 227 LLRSKVK 233 (256)
Q Consensus 227 ~~~~a~~ 233 (256)
.+++++.
T Consensus 85 l~~~a~~ 91 (143)
T PF00637_consen 85 LYEEAVY 91 (143)
T ss_dssp SHHHHHH
T ss_pred hHHHHHH
Confidence 6555554
No 208
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.29 E-value=9.4 Score=30.91 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=52.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH-hhHHHHHHHHHHc
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDA---YIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDS-QTYTEVIRGFLKD 190 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-~t~~~li~~~~~~ 190 (256)
+.+.|++..|.+.|....+.. .-++ ..+=-|-.++...|++++|...|..+.+. .-.|-. ..+=-|-....+.
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 345667777777777776653 2121 23334566777777777777777776653 222221 3344444455566
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|+.++|+.+|++..+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7777777777766554
No 209
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=89.03 E-value=4.7 Score=27.77 Aligned_cols=87 Identities=17% Similarity=0.197 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 199 (256)
...++|..|.+++...+ .-..++--+-+..+.+.|++++| +..- .....||...|-+|-. .+.|..+++...
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~a--~klGL~~~~e~~ 91 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALCA--WKLGLASALESR 91 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHHH--HHCT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHHH--HhhccHHHHHHH
Confidence 35788889999888887 34444555556778888999998 2222 2234588888776644 378888888888
Q ss_pred HHHHHhCCCCCChhHH
Q 025226 200 YEDMIKSPDPPEELPF 215 (256)
Q Consensus 200 ~~~M~~~g~~p~~~t~ 215 (256)
+.++..+| .|....|
T Consensus 92 l~rla~~g-~~~~q~F 106 (116)
T PF09477_consen 92 LTRLASSG-SPELQAF 106 (116)
T ss_dssp HHHHCT-S-SHHHHHH
T ss_pred HHHHHhCC-CHHHHHH
Confidence 88887665 3333443
No 210
>PLN02789 farnesyltranstransferase
Probab=88.90 E-value=13 Score=31.24 Aligned_cols=137 Identities=7% Similarity=0.020 Sum_probs=93.7
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHHH----HHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA----VLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
..+...+..++|+... ..... ..|+..+ -=..+...| ++++++..++++.+.. .-+..+|+..-..+.+.
T Consensus 45 a~l~~~e~serAL~lt-~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n--pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 45 AVYASDERSPRALDLT-ADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN--PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHcCCCCHHHHHHH-HHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--CcchHHhHHHHHHHHHc
Confidence 3455677888888433 44432 3455543 111233445 6899999999999886 56667788766666666
Q ss_pred CCH--HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 156 GKM--NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 156 g~~--~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
|.. +++.++++++.+..- -|...|+..--.+.+.|+++++++.++++.+.+.. |...|+..-..+.+
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 653 778899988887432 37789998888888999999999999999987644 33555554444433
No 211
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=88.80 E-value=3.8 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 124 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+..+-++.+.... ..|++....+.+.+|-+-+++.-|.++|+..+.
T Consensus 28 e~rrglN~l~~~D-lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYD-LVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSS-B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccc-cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555555 566666666666666666666666666666554
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.67 E-value=15 Score=32.57 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=56.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD--SQTYTEVIRGFLK 189 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~ 189 (256)
+=.++.+.|+.++|.+.|.+|.+.....-+......||.++...+.+.++..++.+-.+... |. ..+|+..+--+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-pkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-PKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-CchHHHHHHHHHHHHHh
Confidence 44445578999999999999987641223456888999999999999999999999754322 33 4678876644433
Q ss_pred c
Q 025226 190 D 190 (256)
Q Consensus 190 ~ 190 (256)
.
T Consensus 344 v 344 (539)
T PF04184_consen 344 V 344 (539)
T ss_pred h
Confidence 3
No 213
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.31 E-value=3.4 Score=34.33 Aligned_cols=90 Identities=9% Similarity=0.016 Sum_probs=64.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhh--ccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVL--RLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
+.--....+++++...+++.-.. ....|++. ++++-+-+ -+.++++.+...=.+-| +-||-++++.+|+.+.+.
T Consensus 71 V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYG-iF~dqf~~c~l~D~flk~ 148 (418)
T KOG4570|consen 71 VDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYG-IFPDQFTFCLLMDSFLKK 148 (418)
T ss_pred hhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhc-cccchhhHHHHHHHHHhc
Confidence 33334567778887655533211 22333332 56665554 45789999999989999 999999999999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 025226 156 GKMNEAMQVWESMRKE 171 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~ 171 (256)
+++.+|-++.-.|...
T Consensus 149 ~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 149 ENYKDAASVVTEVMMQ 164 (418)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999888777654
No 214
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.20 E-value=12 Score=32.89 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH-------HhcC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 025226 111 AVLIELERQEETILAVKIFDII-------RKQD---------WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m-------~~~~---------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (256)
.+++-+-+.|..+.|+++-.+- .+.| .-..+...|..|-....+.|+++-|++.|.+...
T Consensus 300 ~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---- 375 (443)
T PF04053_consen 300 SIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---- 375 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----
T ss_pred HHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----
Confidence 3555555666666665553321 1222 1245788999999999999999999999988665
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 175 PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 175 p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|..|.--|.-.|+.+.-..+.+.-.+.|- +|.-..++.-.|+.++.++
T Consensus 376 -----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 376 -----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVD 423 (443)
T ss_dssp -----HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred -----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHH
Confidence 57777778888888777777766666642 5555555555566666555
No 215
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.76 E-value=20 Score=32.18 Aligned_cols=149 Identities=11% Similarity=0.067 Sum_probs=108.0
Q ss_pred chhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCC-cHH---HHHHHHHHcCCHHHHHHHHHH-HHhcCCCCCCHHHHHH
Q 025226 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKM-DIV---AVLIELERQEETILAVKIFDI-IRKQDWYQPDAYIYKD 147 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~---~li~~~~~~~~~~~a~~~~~~-m~~~~~~~p~~~~y~~ 147 (256)
+-.|...++.-.+...++.|- .++.+..+.+..+ +++ ++|.-+ .++|.+-|.++|+- |++.| -++.--..
T Consensus 366 tLv~~~~mn~irR~eGlkaaR-~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~---d~p~yv~~ 440 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAAR-KIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFG---DSPEYVLK 440 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHH-HHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcC---CChHHHHH
Confidence 335555677667777777775 6667888878777 444 355544 56789999999995 55444 34444466
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHHcCChhHHHHHHHHHHhC-C--CCCChhHHHHHHHHh
Q 025226 148 LIIALARTGKMNEAMQVWESMRKEDLFPDS--QTYTEVIRGFLKDGSPADAMNIYEDMIKS-P--DPPEELPFRILLKGL 222 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~a~~~~~~M~~~-g--~~p~~~t~~~li~~~ 222 (256)
.++-+..-++=..+..+|++....++.||. ..|..+|+-=..-|++.-+.++-+++... . ..|...+-..+++.|
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 788889999999999999999988777664 88999999999999999999998887654 1 334444455566655
Q ss_pred cCCC
Q 025226 223 LPHP 226 (256)
Q Consensus 223 ~~~g 226 (256)
.-.+
T Consensus 521 ~~~d 524 (656)
T KOG1914|consen 521 GILD 524 (656)
T ss_pred hhcc
Confidence 5444
No 216
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.63 E-value=1.9 Score=23.27 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355556666666666666666666554
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.62 E-value=6.3 Score=28.72 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=46.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcC
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQ-PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD--SQTYTEVIRGFLKDG 191 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g 191 (256)
..+.|++++|.+.|+.+..+-... -....-=-++.+|-+.+++++|...+++..+.. |+ -+-|--.+.|++.-.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHH
Confidence 346677888888888877663221 223444556777778888888888887777742 33 255666666665533
No 218
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.50 E-value=6 Score=26.72 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 125 a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
+.+-++.+.... ..|++..-++.+.+|-+-+++.-|.++|+..+
T Consensus 26 ~rr~mN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYD-LVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444 55555555666666655566666666665554
No 219
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.42 E-value=15 Score=30.43 Aligned_cols=134 Identities=11% Similarity=0.184 Sum_probs=84.3
Q ss_pred HHHHHHHcCC-----HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHhCC---CCCCH
Q 025226 112 VLIELERQEE-----TILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR--T----GKMNEAMQVWESMRKED---LFPDS 177 (256)
Q Consensus 112 li~~~~~~~~-----~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~--~----g~~~~a~~~~~~m~~~g---~~p~~ 177 (256)
+...++-.++ +++...+++.|.+.| ++-+..+|=+....... . ....+|.++|+.|++.- -.++-
T Consensus 63 la~~l~~~~~~p~~~~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 63 LAALLDISFEDPEEAFKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 4444444444 577888999999999 99888777664333333 2 34778899999999862 33566
Q ss_pred hhHHHHHHHHHHcCC----hhHHHHHHHHHHhCCCCCChh-HHHHHHHHhcCCCChHH---HHH----hhhhhcCCCccc
Q 025226 178 QTYTEVIRGFLKDGS----PADAMNIYEDMIKSPDPPEEL-PFRILLKGLLPHPLLRS---KVK----KDFEELFPEKHA 245 (256)
Q Consensus 178 ~t~~~li~~~~~~g~----~~~a~~~~~~M~~~g~~p~~~-t~~~li~~~~~~g~~~~---a~~----~~~~~~~p~~~~ 245 (256)
+.+..|+.. ..++ .+++..+|+.+.+.|+..+-. .+-+-|-+++....-++ ..+ ....++++-...
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 788888776 3333 466788899999988865332 33333334443332222 222 455666666555
Q ss_pred ccc
Q 025226 246 YDP 248 (256)
Q Consensus 246 ~~~ 248 (256)
|.+
T Consensus 220 yp~ 222 (297)
T PF13170_consen 220 YPT 222 (297)
T ss_pred ccH
Confidence 653
No 220
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.33 E-value=1.8 Score=24.24 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
+|..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777663
No 221
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.32 E-value=12 Score=32.91 Aligned_cols=153 Identities=14% Similarity=0.066 Sum_probs=99.5
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--h
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA--R 154 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~--~ 154 (256)
-++++..++-..|.+...+..-.|... -+|+||... +++.......+..+.. | ...|-.+..+.. +
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~---~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF---G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc---C-CchHHHHHHHHHHHH
Confidence 456777777555544444433334333 388888654 4777777777777663 3 344555655554 5
Q ss_pred cCCHHHHHHHHHHHHhC--CCC------------CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCChhHHH
Q 025226 155 TGKMNEAMQVWESMRKE--DLF------------PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPPEELPFR 216 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~--g~~------------p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p~~~t~~ 216 (256)
.+++++|.+.+...... +-. +|-.-=+..+..+...|.+.++..++++|... ...-+..+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 68899999988887764 322 23333467778888999999999999988754 4457999999
Q ss_pred HHHHHhcCCCChHHHHHhhhhhcCCC
Q 025226 217 ILLKGLLPHPLLRSKVKKDFEELFPE 242 (256)
Q Consensus 217 ~li~~~~~~g~~~~a~~~~~~~~~p~ 242 (256)
.++-.+++.=. =|..+.....+.||
T Consensus 172 ~~vlmlsrSYf-LEl~e~~s~dl~pd 196 (549)
T PF07079_consen 172 RAVLMLSRSYF-LELKESMSSDLYPD 196 (549)
T ss_pred HHHHHHhHHHH-HHHHHhcccccChH
Confidence 98888877533 33445444555554
No 222
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=86.72 E-value=5.1 Score=27.72 Aligned_cols=27 Identities=15% Similarity=0.384 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 179 TYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 179 t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
-|+.|+.-|-..|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999887
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.56 E-value=3.9 Score=22.78 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l 148 (256)
.+=.+|...|++++|.++|++..+.. .-|...|..+
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~--P~~~~a~~~L 41 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALD--PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCCHHHHHHh
Confidence 46678889999999999999999885 4455554443
No 224
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.42 E-value=6.1 Score=31.14 Aligned_cols=72 Identities=11% Similarity=-0.037 Sum_probs=38.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQD-WYQPDAYIYKDLIIA 151 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~y~~li~~ 151 (256)
++.+.+.+...+++....+..+.+.-..+.. -++..+|-.|++++|..-++-.-+.. ...+-..+|..+|.+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 5566667777777655544444333322333 36777777777777766555443221 023444555555543
No 225
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.36 E-value=11 Score=33.40 Aligned_cols=56 Identities=21% Similarity=0.106 Sum_probs=26.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD-AYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
=..+|++.|++++|++=-.+-.+.. |+ .-.|+-.=.++...|++++|..-|.+=.+
T Consensus 42 rsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 42 RSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 4455555555555554444444332 22 23444444444445555555555554333
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.35 E-value=12 Score=34.83 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=85.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
--+.-+...|+..+|.++-.+.+ .||-..|=.=+.+++..+++++-+++-++++. .+-|--.+.+|.+.
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhc
Confidence 45667778899999988877776 79999999999999999999999888777653 45677788999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|+.++|..++.+.... . -.+.+|.+.|++.+|.+
T Consensus 758 ~n~~EA~KYiprv~~l------~---ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL------Q---EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred ccHHHHhhhhhccCCh------H---HHHHHHHHhccHHHHHH
Confidence 9999999998763221 1 57889999999999888
No 227
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=86.23 E-value=13 Score=29.75 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=51.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYK---DLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRG 186 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~---~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~ 186 (256)
..-..+...|++++|.+.|+++.... +-+...-. .+..+|-+.+++++|...|++..+.- -.|+ .-|.-.+.|
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g 113 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRG 113 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHH
Confidence 34455567899999999999999875 22333332 34577789999999999999998752 2222 344445555
Q ss_pred HH
Q 025226 187 FL 188 (256)
Q Consensus 187 ~~ 188 (256)
.+
T Consensus 114 ~~ 115 (243)
T PRK10866 114 LT 115 (243)
T ss_pred Hh
Confidence 44
No 228
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.21 E-value=14 Score=35.72 Aligned_cols=117 Identities=11% Similarity=-0.012 Sum_probs=78.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC-C--CHhhHHHHHHH
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDA----YIYKDLIIALARTGKMNEAMQVWESMRKE--DLF-P--DSQTYTEVIRG 186 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~-p--~~~t~~~li~~ 186 (256)
+...|++++|...+++..+.- ...+. ...+.+-..+...|++++|...+++.... ... + -..+++.+-..
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 462 AINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 457899999999999876532 12222 34455666677899999999999988752 111 1 12345556667
Q ss_pred HHHcCChhHHHHHHHHHHh----CCCC--C-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 187 FLKDGSPADAMNIYEDMIK----SPDP--P-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M~~----~g~~--p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+...|++++|.+.+++..+ .|.. | ....+..+-..+...|++++|..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 594 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQ 594 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7889999999999987654 2321 1 22334455566777899999877
No 229
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.06 E-value=6.5 Score=26.86 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=49.5
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 145 YKDLIIALARTG--KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 145 y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
|++--..|.... +.-+..+-++.+-...+.|+.....+.+++|-+.+++.-|.++|+-.+.. +.+....|..+++-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 344333444433 33466777777777789999999999999999999999999999988754 22233378777753
No 230
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=85.82 E-value=7.4 Score=36.76 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=79.4
Q ss_pred cccccccCCchHHHHHHHHHhcCCCccccccccCCCCCCCCcccCcccccccccccCCC-CC---CccccccccchhHHH
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRP-RG---SLWRGKKLIGKEALF 78 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~-~~---~~~~~~~~~~~~~~~ 78 (256)
.+.|.-.|..|.|-+-++-++...+|.-+-+-|.+-.+++-+ .-++..|....- +. ....... ..+.. .
T Consensus 735 FSfyvtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVA-----kVClGhm~~aRgaRAlR~a~q~~~e-~eakv-A 807 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVA-----KVCLGHMKNARGARALRRAQQNGEE-DEAKV-A 807 (1416)
T ss_pred eeEEEEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHH-----HHhhhhhhhhhhHHHHHHHHhCCcc-hhhHH-H
Confidence 356778899999999999888888899999999988888776 555555543221 10 0000000 01111 1
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELE-RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
++ ....|-.++|. .+++..++ +.|++-+. ..|.+++|+++-+.=-+. .-..||-.--.-+-..++
T Consensus 808 vL--AieLgMlEeA~-~lYr~ckR-------~DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 808 VL--AIELGMLEEAL-ILYRQCKR-------YDLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HH--HHHHhhHHHHH-HHHHHHHH-------HHHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhcc
Confidence 11 13455566665 34333322 13444443 467788887776542222 233344444444455566
Q ss_pred HHHHHHHHHH
Q 025226 158 MNEAMQVWES 167 (256)
Q Consensus 158 ~~~a~~~~~~ 167 (256)
.+.|.+.|++
T Consensus 874 i~~AleyyEK 883 (1416)
T KOG3617|consen 874 IEAALEYYEK 883 (1416)
T ss_pred HHHHHHHHHh
Confidence 6666666654
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=18 Score=29.71 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHH--cC-ChhHHHHHHHHHHhCCCCC-Chh
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLK--DG-SPADAMNIYEDMIKSPDPP-EEL 213 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~--~g-~~~~a~~~~~~M~~~g~~p-~~~ 213 (256)
.-|...|--|=..|...|+++.|..-|.+-.+. |=.| ..+..+-.++.. .+ +..++.++|++.... .| |..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~--~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP--EILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 457777777777788888888887777776663 3323 333333333222 22 345677777777654 22 334
Q ss_pred HHHHHHHHhcCCCChHHHHH
Q 025226 214 PFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 214 t~~~li~~~~~~g~~~~a~~ 233 (256)
.-..|-..+...|++.+|+.
T Consensus 229 al~lLA~~afe~g~~~~A~~ 248 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAA 248 (287)
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 44455567777777777766
No 232
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.45 E-value=8.8 Score=25.94 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
+.-++.+-++.+....+.|+.....+-+++|-+.+++.-|.++|+-.+.. +..+...|..++.-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHH
Confidence 55677777888888889999999999999999999999999999987743 11245577777653
No 233
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.37 E-value=2.3 Score=22.98 Aligned_cols=29 Identities=10% Similarity=0.381 Sum_probs=23.7
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 177 ~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
..+++.|-..|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788899999999999999999988764
No 234
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.10 E-value=20 Score=29.43 Aligned_cols=57 Identities=7% Similarity=-0.045 Sum_probs=23.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
|.+++..+++.+++...-+--+.. -+.-.....-.|-.|.|.++...+.++-....+
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 444444444444443332222221 122233333344444444444444444444443
No 235
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.84 E-value=12 Score=29.02 Aligned_cols=79 Identities=9% Similarity=0.085 Sum_probs=51.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCChhHHHHHHHHhcCCCCh
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS---PDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~---g~~p~~~t~~~li~~~~~~g~~ 228 (256)
+.+.|+ ++|.+.|-++...+.--|...--.|-.-| -..+.+++..++.+..+. +-.+|+..+.+|...|-+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 455555 55666677766665544444444444444 367778888888776643 3467788888888888888877
Q ss_pred HHHH
Q 025226 229 RSKV 232 (256)
Q Consensus 229 ~~a~ 232 (256)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7663
No 236
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=84.61 E-value=17 Score=28.18 Aligned_cols=146 Identities=18% Similarity=0.190 Sum_probs=82.2
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhc-cCCC---cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLR-LLKM---DIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
-..+...|+..+|+..| +..... .-.| +.. .+..++-+.|++++|...++++.+..+-.| ..-+-..+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f-~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLF-EKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHH-HHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-THHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHH-HHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-chhhHHHHHHHHH
Confidence 34567889999998655 444433 2222 222 488899999999999999999888752223 2334444444432
Q ss_pred c-------------CCHHHHHHHHHHHHhCCCCCCHh------hH------------HHHHHHHHHcCChhHHHHHHHHH
Q 025226 155 T-------------GKMNEAMQVWESMRKEDLFPDSQ------TY------------TEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 155 ~-------------g~~~~a~~~~~~m~~~g~~p~~~------t~------------~~li~~~~~~g~~~~a~~~~~~M 203 (256)
. +...+|...|+++.+. -|++. .. -.+-.-|.+.|.+.-|..-++.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~--yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v 167 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR--YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYV 167 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH--CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2 2245666667666642 13321 11 12334467777777787777777
Q ss_pred HhC--CCCCChhHHHHHHHHhcCCCChH
Q 025226 204 IKS--PDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 204 ~~~--g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
.+. +-.-.....-.++++|.+.|..+
T Consensus 168 ~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 168 IENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 765 22222233456777777777655
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=84.45 E-value=18 Score=30.99 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCC-C-CHhhHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 147 DLIIALARTGKMNEAMQVWESMRKE-DLF-P-DSQTYTEVIRGFLK---DGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~-p-~~~t~~~li~~~~~---~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
.++-+|-...+++...++.+.|... .+. + +...=-...-++-+ .|+.++|.+++.......-.+++.||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344577777777777777777763 110 1 11111122223334 5777777777777666555666667766555
Q ss_pred HhcC---------CCChHHHHHhhhhhcCCCcccc
Q 025226 221 GLLP---------HPLLRSKVKKDFEELFPEKHAY 246 (256)
Q Consensus 221 ~~~~---------~g~~~~a~~~~~~~~~p~~~~~ 246 (256)
.|-. ...+++|+..-.++++-+...|
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 4321 1234555554445555553333
No 238
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.22 E-value=3.6 Score=21.18 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555555666666666666665544
No 239
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=83.88 E-value=28 Score=30.29 Aligned_cols=126 Identities=14% Similarity=0.018 Sum_probs=84.4
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELE---RQEETILAVKIFDIIRKQDWYQPD-AYIYKDLIIA 151 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 151 (256)
|--+++.|...++.++|.-..-..+..-+-.....+|+.+.+ ...--++|..+++.-.+.. |+ +..-+.+-..
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~---P~Y~~AV~~~AEL 447 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN---PIYTPAVNLIAEL 447 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---CccHHHHHHHHHH
Confidence 334578888888888886322222222111111124553222 2234588988888766553 44 3445566677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
+...|..+++..+++.-.. ..||...-+.|-+-+...+.+++|++.|..-...
T Consensus 448 ~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 448 CQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 7788999999999998776 4689999999999999999999999988765544
No 240
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=83.82 E-value=37 Score=31.51 Aligned_cols=135 Identities=15% Similarity=0.109 Sum_probs=90.5
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHHH----HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIVA----VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
-.++.++|+ .++.+..+. -|+... +=..+-+.++.+.|...|..-.+. |...+..|-.|-..=-+.|.+-+
T Consensus 663 ~ld~~eeA~-rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 663 YLDNVEEAL-RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HhhhHHHHH-HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHHHHhcchhh
Confidence 456666776 333333221 244442 333455667778888877765555 56677788888888888899999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 161 AMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 161 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
|..+|+.-+-.+ +-|...|-..|+.=.+.|+.+.|..++.+..+. +.-+...|.--|....+.+
T Consensus 738 AR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 738 ARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 999999877654 237789999999999999999999988877664 3333444444444444443
No 241
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=83.75 E-value=4.8 Score=23.21 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=22.6
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
+.|-.+++..++++|.+.|+..+...|..+++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 55666677777777777777777777766665
No 242
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=82.97 E-value=18 Score=27.24 Aligned_cols=118 Identities=14% Similarity=0.184 Sum_probs=74.1
Q ss_pred HHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHH
Q 025226 93 LQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG--KMNEAMQVWES 167 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~ 167 (256)
+-++.+.....++.|+.. -+|+.+.+.|++..- ..+.+.+ +.+|...-...+-.+.... -..-|.+++.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~-Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYH-VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhc-ccCCcHHHHHHHHHhHccChHHHHHHHHHHHH
Confidence 345666667777777654 388888888886655 4455555 6777777776665555432 23444444444
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 168 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
+.. .+..+++.+...|++-+|.++.+..... +...-..++++-.+.++
T Consensus 88 L~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D 135 (167)
T PF07035_consen 88 LGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSND 135 (167)
T ss_pred hhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCC
Confidence 442 3567778888889998888888775332 22333556666666654
No 243
>PRK11906 transcriptional regulator; Provisional
Probab=82.96 E-value=33 Score=30.28 Aligned_cols=111 Identities=13% Similarity=0.214 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCChhHH
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS---QTYTEVIRGFLKDGSPADA 196 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a 196 (256)
.+..+|.+.-..-.+.+ .-|......+=.+....++++.|..+|++.... .||. ..|..++..+ +|+.++|
T Consensus 318 ~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~--~G~~~~a 391 (458)
T PRK11906 318 LAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFH--NEKIEEA 391 (458)
T ss_pred HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHH--cCCHHHH
Confidence 35678888888888887 678888877777778888899999999997763 4653 4455555554 7999999
Q ss_pred HHHHHHHHh-CCCCCChhHHHHHHHHhcCCCChHHHHHhhhh
Q 025226 197 MNIYEDMIK-SPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237 (256)
Q Consensus 197 ~~~~~~M~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 237 (256)
.+.+++-.+ +-.+--....--.|+.|+.++. +++++.-.+
T Consensus 392 ~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 432 (458)
T PRK11906 392 RICIDKSLQLEPRRRKAVVIKECVDMYVPNPL-KNNIKLYYK 432 (458)
T ss_pred HHHHHHHhccCchhhHHHHHHHHHHHHcCCch-hhhHHHHhh
Confidence 999998444 3334444555566778887764 778774433
No 244
>PLN02789 farnesyltranstransferase
Probab=82.72 E-value=28 Score=29.28 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=85.5
Q ss_pred HhhcCC-CcHHHHHHHHHHHhhccCCCcHH-H---HHHHHHHcCC--HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 82 GLKRFK-DDEEKLQKFIKTHVLRLLKMDIV-A---VLIELERQEE--TILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 82 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~-~---li~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
.+...+ ..++++ .+++...+.. |... + --..+.+.|. .++++.+++.+.+.. .-|..+|+-.--.+.+
T Consensus 80 iL~~L~~~l~eeL-~~~~~~i~~n--pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 80 CLEALDADLEEEL-DFAEDVAEDN--PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRT 154 (320)
T ss_pred HHHHcchhHHHHH-HHHHHHHHHC--CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHH
Confidence 334445 456776 4445554433 3322 1 1111233444 377899999999886 6789999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC---ChhHHHH-HHHHH-HhCCCC-CChhHHHHHHHHhcCC
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG---SPADAMN-IYEDM-IKSPDP-PEELPFRILLKGLLPH 225 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~a~~-~~~~M-~~~g~~-p~~~t~~~li~~~~~~ 225 (256)
.|+++++.+.++++.+.+. -|...|+...-.+.+.| ..+...+ -+.-- ...... -|...|+.+-..|...
T Consensus 155 l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred hhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 9999999999999998654 36677777666665553 3322111 11111 122333 4677888777777763
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.94 E-value=28 Score=28.78 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
+..+|...|+++.|..+++.+...- -......-..-|..+.+.....+...+-.+.-.. | |...=-.+-..|...
T Consensus 174 la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~ 249 (304)
T COG3118 174 LAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLV 249 (304)
T ss_pred HHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHc
Confidence 5555555555555555555554332 1111112122233333333333333333332221 3 333333444445555
Q ss_pred CChhHHHHHHHHHH
Q 025226 191 GSPADAMNIYEDMI 204 (256)
Q Consensus 191 g~~~~a~~~~~~M~ 204 (256)
|+.+.|.+.+-.+.
T Consensus 250 g~~e~Ale~Ll~~l 263 (304)
T COG3118 250 GRNEAALEHLLALL 263 (304)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666555554444
No 246
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.89 E-value=33 Score=29.58 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=78.9
Q ss_pred HHhhcCCCcHHHHHHHHHHHhh----ccCCCcHH------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVL----RLLKMDIV------------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYI 144 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 144 (256)
+.|.+.|++..|...+-+...- .+..+.-. .+--++.+.+++.+|++.=+.....+ .+|+-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence 3667888888887554321111 11111110 25556678889999999888888776 667665
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCC-hhHHHHHHHHHHh
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK-DGS-PADAMNIYEDMIK 205 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~-~~~a~~~~~~M~~ 205 (256)
.=--=.+|...|+++.|...|+++.+ +.|+-..-+.=|..|.+ ..+ .++..++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556677788999999999999888 46766655555555544 333 3455778888864
No 247
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=81.86 E-value=18 Score=29.67 Aligned_cols=86 Identities=13% Similarity=0.093 Sum_probs=65.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART- 155 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~- 155 (256)
-|.+++..+++.+.+.-+++.... ..++|.+. -.|-.|.|.+++..+.++-....+.. -.-+...|.++...|..+
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p-~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDP-SNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCc-ccCCchhhHHHHHHHHHHH
Confidence 388999999999988655554443 23444444 36888999999999999999776654 355666699999998875
Q ss_pred ----CCHHHHHHHH
Q 025226 156 ----GKMNEAMQVW 165 (256)
Q Consensus 156 ----g~~~~a~~~~ 165 (256)
|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 9999999887
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.77 E-value=16 Score=27.72 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
.+..+-..|++.|+.++|.+.|.++.+....|. ...+-.+|+.....|++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344555555555555555555555555433332 2334455555555555555555554443
No 249
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=81.21 E-value=8.9 Score=29.40 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=32.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
...+.+......+...+.-+..|++.+|..++.++...|+.++|.++.+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444433322467777777777777777777777777777665
No 250
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=80.95 E-value=50 Score=31.03 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=51.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChh
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPA 194 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~ 194 (256)
+.+.+..++|...+.+..+.. ......|.-.=..+...|..++|.+.|..-.. +.|| +.+.+++-..+.+.|+..
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcc
Confidence 344444455544444444432 33333444433444444555555555544333 2232 344444555555555444
Q ss_pred HHHH--HHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 195 DAMN--IYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 195 ~a~~--~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
-|.. ++.++.+.+. -+...|-.+=..+-+.|+.++|.+
T Consensus 736 la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHH
Confidence 4444 4555444421 233444445555555555555544
No 251
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.83 E-value=44 Score=30.40 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=74.0
Q ss_pred HHHHhhcCCCcHHHHHHHHH--------HHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCCHHHHHHH
Q 025226 79 VILGLKRFKDDEEKLQKFIK--------THVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQD-WYQPDAYIYKDL 148 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~--------~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~y~~l 148 (256)
.+.-....|+++.|+..+ . ...+.+..|.++ +++..+.+.++-+.|-.++++-.+.= .-.+.....+++
T Consensus 382 ~aQl~is~gn~~~A~~il-~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEIL-SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHhcCCHHHHHHHH-HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 345556778888887433 4 344555667666 46666666666666666666543220 002222333333
Q ss_pred H----HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 149 I----IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 149 i----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
+ ..-.+.|.-++|.++++++.+.+ .+|..+...++.+|++. ++++|..+-..+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3 33346688888888888887732 36788888888888864 466777665544
No 252
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.53 E-value=1.9 Score=30.99 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 185 (256)
|.-.+|..+|.+|.++|-.|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 334445555555555555444 3444443
No 253
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.50 E-value=11 Score=35.07 Aligned_cols=120 Identities=10% Similarity=0.050 Sum_probs=87.5
Q ss_pred ccCCCcHHHHHHHHHHcCCHHH----------HHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 103 RLLKMDIVAVLIELERQEETIL----------AVKIFDIIRKQ-DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 103 ~~~~~~~~~li~~~~~~~~~~~----------a~~~~~~m~~~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
.+..|+..+.=++|.+.....- -++++..+..+ | ....--+-+--+.-+..-|.-.+|.++-.+.+-
T Consensus 635 ~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~-~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki- 712 (829)
T KOG2280|consen 635 EGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFG-GSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI- 712 (829)
T ss_pred cccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhc-cccccCcHHHHHHHHHHccchHHHHHHHHhcCC-
Confidence 4566777667777776655221 12222333322 3 344555667777888889999999999888876
Q ss_pred CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 172 DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 172 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
||-.-|--=+.+++..+++++-+++-..++. +.-|.-.++.|.+.|+.+||.+
T Consensus 713 ---pdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~K 765 (829)
T KOG2280|consen 713 ---PDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKK 765 (829)
T ss_pred ---cchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhh
Confidence 9999999999999999999888877766553 4556668899999999999988
No 254
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.95 E-value=18 Score=28.10 Aligned_cols=83 Identities=8% Similarity=-0.016 Sum_probs=62.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE---DLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~ 188 (256)
+---+.+.| -++|.+.|-.+...+ ..++..--.-+..|--..+.+++..++.+..+. +-.+|...+.+|.+.|-
T Consensus 113 lYy~Wsr~~-d~~A~~~fL~~E~~~--~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 113 LYYHWSRFG-DQEALRRFLQLEGTP--ELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred HHHHhhccC-cHHHHHHHHHHcCCC--CCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 333344445 368899999999888 445555555555666678899999999988763 33788999999999999
Q ss_pred HcCChhHHH
Q 025226 189 KDGSPADAM 197 (256)
Q Consensus 189 ~~g~~~~a~ 197 (256)
+.|+.+.|.
T Consensus 190 ~~~~~e~AY 198 (203)
T PF11207_consen 190 KLKNYEQAY 198 (203)
T ss_pred Hhcchhhhh
Confidence 999998885
No 255
>PRK15331 chaperone protein SicA; Provisional
Probab=79.92 E-value=16 Score=27.38 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=55.5
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhH-HHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTY-TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a 231 (256)
-..|++++|+.+|.-+.-.+ |-..-| ..|=..|-..+++++|.+.|...-.... -|+..+-..-.+|...|+.++|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 46799999999999887743 333334 4444444457899999999987665432 3444555677888889998888
Q ss_pred HH
Q 025226 232 VK 233 (256)
Q Consensus 232 ~~ 233 (256)
..
T Consensus 125 ~~ 126 (165)
T PRK15331 125 RQ 126 (165)
T ss_pred HH
Confidence 87
No 256
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.59 E-value=11 Score=28.97 Aligned_cols=60 Identities=13% Similarity=0.082 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 147 DLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
..+.......+.+......+...+. ...|+...|..++..+...|+.++|.++..++...
T Consensus 113 ~~l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 113 ALLLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333334556666555555554442 46799999999999999999999999999988765
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.47 E-value=34 Score=28.27 Aligned_cols=138 Identities=12% Similarity=0.070 Sum_probs=90.8
Q ss_pred CcHHHHHHHHHHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025226 88 DDEEKLQKFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165 (256)
Q Consensus 88 ~~~~a~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 165 (256)
.++..+..|++..... +... .--......|++.+|...|+...... .-+...--.+..+|...|+.+.|..++
T Consensus 117 qPesqlr~~ld~~~~~---~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL 191 (304)
T COG3118 117 QPESQLRQFLDKVLPA---EEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAIL 191 (304)
T ss_pred CcHHHHHHHHHHhcCh---HHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHH
Confidence 3555666666554333 2222 24556678899999999999887774 344566678899999999999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
..+...--.........=|..+.+.....+..++-.+.... | |...=-.+-..|...|+.++|++
T Consensus 192 ~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale 257 (304)
T COG3118 192 AALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALE 257 (304)
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99886422222333333455555666665555555555443 4 44444466777888888888888
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.41 E-value=23 Score=26.36 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=60.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL-IIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
++..-.+.++.+++..+++.+.-.. |.......+ -..+...|++++|.++|+++... +...-|..-+-++|-.
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLR---P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~---~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLR---PEFPELDLFDGWLHIVRGDWDDALRLLRELEER---APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc---CCCChHHHHHHHHHHH
Confidence 3444456678888888888887553 443333322 33457788888888888887664 2333344444444444
Q ss_pred CChhHHHHHHH-HHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 191 GSPADAMNIYE-DMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 191 g~~~~a~~~~~-~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
..=+..++.+- +..+.+-.|+.. .+++.+....+...|.
T Consensus 90 ~~~D~~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HcCChHHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 33344444443 344554444433 3444444433333333
No 259
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.07 E-value=7.3 Score=25.20 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-C-HhhHHHHHHHHHHcCChhHHHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFP-D-SQTYTEVIRGFLKDGSPADAMNI 199 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p-~-~~t~~~li~~~~~~g~~~~a~~~ 199 (256)
...+-++|+..|....+.-..| + -.++..|+.+|+.-|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544432221 1 13445555555555555555443
No 260
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=78.85 E-value=14 Score=25.76 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~ 147 (256)
++|+-+.++.-.++|++|.+.|.++| ..+...-+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G--EIt~e~A~e 100 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG--EITPEEAKE 100 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 68888888899999999999999999 455433333
No 261
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=78.78 E-value=55 Score=30.30 Aligned_cols=112 Identities=12% Similarity=0.161 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHhcCCHHHH---HHHHHHHHhCCCCCCH--hhH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDW-----YQPDAYIYKDLIIALARTGKMNEA---MQVWESMRKEDLFPDS--QTY 180 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~p~~~~y~~li~~~~~~g~~~~a---~~~~~~m~~~g~~p~~--~t~ 180 (256)
-.|.-+++++++++|-+.+.....+.. -+.+-..|+-+-+..++.-+.-.. ..++..+.. .-||. ..|
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~--rftDq~g~Lw 251 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIR--RFTDQLGFLW 251 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcc--cCcHHHHHHH
Confidence 366667777777777777766542210 134444555555555444322222 222222222 23443 568
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 181 TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
++|-+-|.+.|.+++|.++|++-.+. ..+..-|+.+.+.|++-.
T Consensus 252 ~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 252 CSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 88888888888888888888876655 235566777777777644
No 262
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.61 E-value=29 Score=28.38 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=88.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-----
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG----- 186 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~----- 186 (256)
+++.+-..+.+.-...++++..+.. ..-++.....|...-...|+.+.|...|++..+..-..|..+++.++.-
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~-~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYY-PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 5555556678888888888888876 4667777777777778889999999999977665444566666665543
Q ss_pred HHHcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHhcCCCChHHHHHhh--hhhcCCCcccccch
Q 025226 187 FLKDGSPADAMNIYEDMIKSP-DPPEELPFRILLKGLLPHPLLRSKVKKD--FEELFPEKHAYDPP 249 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~--~~~~~p~~~~~~~l 249 (256)
|.-.+++..|...|.+..... -.|-...--+|+-. -.|+..+|++.. .....|...+-+++
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll--Ylg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL--YLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred eecccchHHHHHHHhhccccCCCchhhhchHHHHHH--HHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 344567888888888776541 11222222244443 357888898822 24445655554443
No 263
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=78.49 E-value=43 Score=28.84 Aligned_cols=100 Identities=20% Similarity=0.234 Sum_probs=65.9
Q ss_pred CcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHhhH
Q 025226 107 MDIV-AVLIELERQEETILAVKIFDIIRKQDWYQ-PD-AYIYKDLIIALAR---TGKMNEAMQVWESMRKEDLFPDSQTY 180 (256)
Q Consensus 107 ~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~-~~~y~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~t~ 180 (256)
+|+. .++-+|....+++...++.+.+.....+. ++ ...--...-++-+ .|+.++|.+++.......-.++..||
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 4444 47778999999999999999999663111 11 1111122233445 79999999999997776666777788
Q ss_pred HHHHHHHHH---------cCChhHHHHHHHHHHhC
Q 025226 181 TEVIRGFLK---------DGSPADAMNIYEDMIKS 206 (256)
Q Consensus 181 ~~li~~~~~---------~g~~~~a~~~~~~M~~~ 206 (256)
..+-+-|-. ....++|.+.|.+--+.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 777666543 12366777777764433
No 264
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=78.40 E-value=47 Score=29.32 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=68.9
Q ss_pred HHHHHH--HHcCCHHHHHHHHHHHHhc--CCCC------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 025226 111 AVLIEL--ERQEETILAVKIFDIIRKQ--DWYQ------------PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--- 171 (256)
Q Consensus 111 ~li~~~--~~~~~~~~a~~~~~~m~~~--~~~~------------p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--- 171 (256)
.+..++ .+.++.++|.+.+....++ + .. +|-..=+..+.++...|++.++..++++|...
T Consensus 82 ~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~-~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llk 160 (549)
T PF07079_consen 82 PLFKALVAYKQKEYRKALQALSVWKEQIKG-TESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLK 160 (549)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhcc-cccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhh
Confidence 444443 4678899999999988766 3 11 23333467788889999999999999988764
Q ss_pred -CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCChhHHHHHHHHhcC
Q 025226 172 -DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS---PDPPEELPFRILLKGLLP 224 (256)
Q Consensus 172 -g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~---g~~p~~~t~~~li~~~~~ 224 (256)
...=|+.+||.++-.+++ ..|=++++. .+-|+ |--++-.|-+
T Consensus 161 rE~~w~~d~yd~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~k 206 (549)
T PF07079_consen 161 RECEWNSDMYDRAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLK 206 (549)
T ss_pred hhhcccHHHHHHHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHH
Confidence 444788999998888775 466666543 34454 3334444443
No 265
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=78.29 E-value=3.4 Score=29.69 Aligned_cols=32 Identities=31% Similarity=0.614 Sum_probs=26.3
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
+.|.-.+|..+|.+|+++|-.|| .|+.|+...
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34667789999999999999998 588887754
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=78.19 E-value=27 Score=26.44 Aligned_cols=125 Identities=14% Similarity=0.041 Sum_probs=73.5
Q ss_pred HhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 025226 100 HVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPD--AYIYKDLIIALARTGKMNEAMQVWESMRKE-- 171 (256)
Q Consensus 100 ~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-- 171 (256)
.+....+.++. .+-+-|++.|++++|++.|.++.+.. ..|. ...+=.+|......+++..+....++....
T Consensus 26 ~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 26 AKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 33444444443 58888889999999999999888764 3332 234556677778888888888887776653
Q ss_pred -CCCCCHhhHHHHHHHH--HHcCChhHHHHHHHHHHhC-C-------CCCChhHHHHHHHHhcCC
Q 025226 172 -DLFPDSQTYTEVIRGF--LKDGSPADAMNIYEDMIKS-P-------DPPEELPFRILLKGLLPH 225 (256)
Q Consensus 172 -g~~p~~~t~~~li~~~--~~~g~~~~a~~~~~~M~~~-g-------~~p~~~t~~~li~~~~~~ 225 (256)
|-.++...-=....|+ ...|++.+|-+.|-+.... + +.|+...+-..|.++...
T Consensus 105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~ 169 (177)
T PF10602_consen 105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATL 169 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhC
Confidence 2222221111222222 2357888888887765432 1 234444444455555443
No 267
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=77.86 E-value=5.3 Score=20.97 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=13.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
+-|...|+.+=..|...|+.++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345555666666666666665553
No 268
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=77.49 E-value=64 Score=30.34 Aligned_cols=127 Identities=15% Similarity=0.039 Sum_probs=92.0
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH--HHHH--HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--AVLI--ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~li~--~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
..|+.....+.+.++.+++..-+. +. .+..|-.. --++ .+...|.+++|.+.|..-.... +-++..-+++-
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~-Ea--~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld--P~hv~s~~Ala 725 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLL-EA--SKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD--PDHVPSMTALA 725 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHH-HH--HhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC--CCCcHHHHHHH
Confidence 355556677778888888764333 22 23333322 1233 3456788999999999887665 45667788888
Q ss_pred HHHHhcCCHHHHHH--HHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 150 IALARTGKMNEAMQ--VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 150 ~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
..+.+.|+..-|.. ++.++.+.+- -+...|-.+=..+-+.|+.++|.+.|..-.+.
T Consensus 726 ~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 726 ELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99999998888887 9999988542 25688999999999999999999999876543
No 269
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.24 E-value=40 Score=27.81 Aligned_cols=122 Identities=11% Similarity=0.081 Sum_probs=90.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCChh
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR-TG-KMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSPA 194 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~ 194 (256)
+...+.+|+++|+...-.+.+..|..+-..++..... .+ ....-.++.+-+.. .|-.++..+--++|..+++.+++.
T Consensus 140 ~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 140 RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3456889999999433322277888888888888887 33 34444455555554 357788889999999999999999
Q ss_pred HHHHHHHHHHhC-CCCCChhHHHHHHHHhcCCCChHHHHHhhhhhc
Q 025226 195 DAMNIYEDMIKS-PDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239 (256)
Q Consensus 195 ~a~~~~~~M~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 239 (256)
+-++++..-... +..-|...|...|+.-.+.|+..-+.+...+|.
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~Gh 265 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGH 265 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCC
Confidence 999999877655 677799999999999999998665555444443
No 270
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=76.63 E-value=13 Score=26.42 Aligned_cols=88 Identities=13% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCChhHHHH
Q 025226 122 TILAVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSPADAMN 198 (256)
Q Consensus 122 ~~~a~~~~~~m~~~--~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~ 198 (256)
+.+|+.-+++.... . .++......+|..|--+ +|-+.+++++... .|+. +..+-..+++...+.|-+++...
T Consensus 6 ~~kAl~~L~ea~~~~~~--~~~~~~~dg~IqrFE~t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~e~ 80 (124)
T PF08780_consen 6 FKKALSRLEEALEKYED--PLSELERDGVIQRFEFT--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDGEI 80 (124)
T ss_dssp HHHHHHHHHHHHHHH-S--CHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHHHH
T ss_pred HHHHHHHHHHHHHhccC--cchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCHHH
Confidence 45555555555543 2 45666666666666665 6666666666444 4664 44455777777777777766666
Q ss_pred HHHHHHhCCCCCChhHHH
Q 025226 199 IYEDMIKSPDPPEELPFR 216 (256)
Q Consensus 199 ~~~~M~~~g~~p~~~t~~ 216 (256)
+++-...++. +++||+
T Consensus 81 Wl~m~~~RN~--tsHtYd 96 (124)
T PF08780_consen 81 WLDMLEDRNL--TSHTYD 96 (124)
T ss_dssp HHHHHHHHHH--GGGTTS
T ss_pred HHHHHHHhcc--ccCCCC
Confidence 5554444433 344443
No 271
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.62 E-value=34 Score=30.46 Aligned_cols=123 Identities=9% Similarity=-0.043 Sum_probs=86.8
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAV-LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
|.--...|+...|-..+++......--|+..-| -..+...|+++.+.+.+....+. +.....+-.+++...-+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhH
Confidence 444456777777777777777666555766633 33456789999999998887655 467778899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
++|..+-+-|....+.... ....--..--..|-+|++...+++...
T Consensus 374 ~~a~s~a~~~l~~eie~~e-i~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIEDEE-VLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccCChh-heeeecccHHHHhHHHHHHHHHHHHhc
Confidence 9999999999887654222 222222222345678888888887754
No 272
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=76.58 E-value=17 Score=26.64 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=42.8
Q ss_pred HHHHHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcC
Q 025226 95 KFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAY-IYKDLIIALARTG 156 (256)
Q Consensus 95 ~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~~~~~g 156 (256)
.+....+++|++++.. .+++.+...++.-.|.++|+++++.+ ...+.. +|++ ++.+...|
T Consensus 7 ~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~-L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEG-PGISLATVYRT-LKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHH-HHHHHHCC
Confidence 3456677888887665 79999999988899999999999987 455443 3443 34444443
No 273
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.46 E-value=28 Score=25.66 Aligned_cols=91 Identities=10% Similarity=0.215 Sum_probs=50.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 197 (256)
..++++++..+++.|.-..+-.|...+|...| +...|++++|.++|++..+.+ ....|..-+.++|-.-.=|-.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~---~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA---GAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC---CCchHHHHHHHHHHHhcCChHH
Confidence 46777888888887775532233334444333 467778888888888877652 2235555566666544444444
Q ss_pred HHHH-HHHhCCCCCChh
Q 025226 198 NIYE-DMIKSPDPPEEL 213 (256)
Q Consensus 198 ~~~~-~M~~~g~~p~~~ 213 (256)
+.+. ++.+.+-.|+..
T Consensus 97 r~~A~~~le~~~~~~a~ 113 (153)
T TIGR02561 97 HVHADEVLARDADADAV 113 (153)
T ss_pred HHHHHHHHHhCCCHhHH
Confidence 4433 333444444433
No 274
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=75.88 E-value=57 Score=28.91 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=98.9
Q ss_pred chhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH-HH
Q 025226 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY-KD 147 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y-~~ 147 (256)
+..|-..++.-.+....+.|- .++-+..+.+ +.++++ ++|.-+ ..|+..-|..+|+--... -||...| +-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR-~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAAR-KLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHH-HHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 334555566666777677775 4445566666 556665 455544 568889999999953333 2454444 56
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 148 LIIALARTGKMNEAMQVWESMRKEDLFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
.+.-+.+-++-+.|..+|+.-..+ +..+ ...|..+|+-=.+-|++..|..+=++|.+. .|-..+-.+..+.|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 678888999999999999954432 1223 578999999999999999999888888765 566666666666655
No 275
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=75.62 E-value=48 Score=32.28 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
.|=.-|+...|...|.+.|....+.. ..|...+....+.|+...++++|..+
T Consensus 497 ~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 497 FLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHH
Confidence 35555666667788888888877776 56777888888888888888888777
No 276
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=75.47 E-value=27 Score=33.26 Aligned_cols=101 Identities=11% Similarity=0.142 Sum_probs=68.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--------CCCCHhhHHHHHH
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-D--------LFPDSQTYTEVIR 185 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~t~~~li~ 185 (256)
.|.-.|+.+.|++-.+-++ +...|..|-+.|.+..++|-|.-.+..|... | -.|+.. .+=+.
T Consensus 737 fyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--eakvA 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--EAKVA 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--hhHHH
Confidence 3566788888877766655 5568999999999999888888888877642 2 123211 11111
Q ss_pred H-HHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 186 G-FLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 186 ~-~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
. -...|.+++|..+|++-+. |..|-+-|-..|+|++|++
T Consensus 808 vLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~e 847 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFE 847 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHH
Confidence 1 2356888888888887554 4456666777788888877
No 277
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.18 E-value=5.7 Score=19.31 Aligned_cols=16 Identities=31% Similarity=0.329 Sum_probs=6.7
Q ss_pred HHHHhcCCHHHHHHHH
Q 025226 150 IALARTGKMNEAMQVW 165 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~ 165 (256)
..+...|+.++|..++
T Consensus 9 ~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 9 RALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 3344444444444443
No 278
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=74.05 E-value=5.5 Score=32.97 Aligned_cols=68 Identities=7% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHHH-HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHHcCChhHH
Q 025226 122 TILAVKIF-DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE-SMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196 (256)
Q Consensus 122 ~~~a~~~~-~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 196 (256)
+++..... ++|++.+ .|++..-.++=++......+.+=+++-. +..+ -.-+|..|+.++|..|+.+-.
T Consensus 271 ~~evi~~VKee~k~~n--lPe~eVi~ivWs~iMsaveWnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 271 VKEVILYVKEEMKRNN--LPETEVIGIVWSGIMSAVEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHHHHHHHHHHHhcC--CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHH
Confidence 44443333 3555554 6666543333333333344443333222 2221 345677777777777776543
No 279
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=73.85 E-value=15 Score=21.16 Aligned_cols=33 Identities=6% Similarity=0.227 Sum_probs=17.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
..+.|-..++..++++|.+.| +..+...|+.++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g-~~is~~l~~~~L 44 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAG-FRISPKLIEEIL 44 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcC-cccCHHHHHHHH
Confidence 334444555555555555555 555555555444
No 280
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=73.69 E-value=24 Score=27.31 Aligned_cols=115 Identities=17% Similarity=0.144 Sum_probs=67.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQ-PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS--QTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~li~~~~ 188 (256)
.-..+...|++++|.+.|+.+....+.. --....=.+..++-+.|++++|...|++..+. .|+. .-+-..+.|.+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHH
Confidence 4455678899999999999998774211 22234456678888999999999999998773 2443 33444455544
Q ss_pred HcCChhHHHHHHHHHHhCCC---CCChhHHHHHHHHhcCCCChHHHHH
Q 025226 189 KDGSPADAMNIYEDMIKSPD---PPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~---~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.-....... ..+... .--..+|..+|+-|-......+|.+
T Consensus 89 ~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~ 131 (203)
T PF13525_consen 89 YYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKK 131 (203)
T ss_dssp HHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHH
T ss_pred HHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHH
Confidence 322222211 001100 0123577888888888877776655
No 281
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=72.83 E-value=8.4 Score=31.79 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=27.5
Q ss_pred CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 025226 138 YQPDAYIY-KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180 (256)
Q Consensus 138 ~~p~~~~y-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 180 (256)
+.||+.+| |..|..-.+.||+++|.++++|.++.|+.--..||
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 44555543 57777777777777777777777776665433333
No 282
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.07 E-value=75 Score=28.55 Aligned_cols=99 Identities=19% Similarity=0.249 Sum_probs=73.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG-- 191 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-- 191 (256)
+.+.+.|++..|...|.++.++. +-|...|...-.+|.+.|.+..|.+=-+...+. .|+ .+.+|.+.|
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~------~~kgy~RKg~a 435 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPN------FIKAYLRKGAA 435 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--Cch------HHHHHHHHHHH
Confidence 34668899999999999999996 778899999999999999999998877766653 344 345555544
Q ss_pred -----ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 192 -----SPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 192 -----~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
++++|.+.|.+-++. .|+..-+.--+.-|..
T Consensus 436 l~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 577777777776665 3666666655555554
No 283
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.91 E-value=41 Score=26.70 Aligned_cols=75 Identities=17% Similarity=0.045 Sum_probs=60.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGF 187 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~ 187 (256)
.-|+.+.+.+.+.+++....+=.+.. ..|..+-..++..||-.|++++|..-++-.-+. ...+-..+|..+|++-
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 35778889999999999999888775 667788888999999999999998777655442 4556678888888764
No 284
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.58 E-value=67 Score=27.78 Aligned_cols=106 Identities=15% Similarity=0.046 Sum_probs=71.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhcC----C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 025226 115 ELERQEETILAVKIFDIIRKQD----W---------YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~----~---------~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 181 (256)
.+.+.|++..|..-|+...+.= . ...-..+++.+-.+|.+.+++.+|.+.-++-+..+- +|+-..=
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALy 295 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALY 295 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHH
Confidence 4567777777777776632210 0 134456788889999999999999998888776421 2333322
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
-==.+|...|+++.|...|+++.+. .|+...-+.=|..|.
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 2335677789999999999999876 666666665444444
No 285
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.44 E-value=23 Score=29.33 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
++..-..|..+|.+.+|.++.+...... +.+...|-.+|..++..|+--.|..-+++|
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444455555666666666555554421 124445555666666666554555444444
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.40 E-value=12 Score=18.96 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 147 DLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
.+=..|...|++++|.+.|++..+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444455555555555554443
No 287
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.34 E-value=44 Score=25.63 Aligned_cols=67 Identities=15% Similarity=0.231 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC--HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 025226 122 TILAVKIFDIIRKQDWYQPD--AYIY-----KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~--~~~y-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 192 (256)
++.|+.+|+.+.+.- -.|. ...- -..+..|.+.|.+++|.+++++.-.. |+....-.-+....+.++
T Consensus 85 LESAl~v~~~I~~E~-~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEF-SLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 578888888888775 2221 1111 23345677888888888888887763 666666555555555544
No 288
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=70.42 E-value=27 Score=26.28 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=46.9
Q ss_pred HHHHHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 95 KFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 95 ~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
.+.+.++..|++++.. +++..+....+.-.|.++++.+.+.+ ..++..|----|..+...|-+.+
T Consensus 12 ~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~-~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAE-PQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhC-CCCCcchHHHHHHHHHHCCCEEE
Confidence 3444566778777655 68888888777778999999999998 66676665555677777765543
No 289
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=70.40 E-value=53 Score=32.01 Aligned_cols=82 Identities=20% Similarity=0.222 Sum_probs=46.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCChhH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG--FLKDGSPAD 195 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~ 195 (256)
+.+++.+|..-|+.-.+.. +.|...|..+-.+|..+|++..|.++|.+... +.|+ .+|...-.+ -|..|+..+
T Consensus 574 ea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred CccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHH
Confidence 3445555655555555443 45666777777777777777777777766554 2233 223222221 244566666
Q ss_pred HHHHHHHHH
Q 025226 196 AMNIYEDMI 204 (256)
Q Consensus 196 a~~~~~~M~ 204 (256)
|+..+....
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 666665543
No 290
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.38 E-value=16 Score=22.28 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=6.4
Q ss_pred HHHHHhcCCHHHHHHHHH
Q 025226 149 IIALARTGKMNEAMQVWE 166 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~ 166 (256)
|.+|...|++++|.+..+
T Consensus 30 I~gllqlg~~~~a~eYi~ 47 (62)
T PF14689_consen 30 IYGLLQLGKYEEAKEYIK 47 (62)
T ss_dssp HHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHH
Confidence 333333333333333333
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=70.37 E-value=58 Score=26.60 Aligned_cols=220 Identities=9% Similarity=-0.080 Sum_probs=115.7
Q ss_pred ccccCCchHHHHHHHHHhcCC-C-------------ccccccccCCCCCCCCcccCcccccccccccCCC-----CCCcc
Q 025226 6 FSRSKIPILASIVLQNLTKNP-S-------------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRP-----RGSLW 66 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~-~-------------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~-----~~~~~ 66 (256)
..+.|+.+.|...+.....-- . ||+-.+.+.+..+.+.+ +..+++-.+--. .....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a-----~~wL~~a~~~l~~~~~~~~~~~ 77 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEA-----VKWLQRAYDILEKPGKMDKLSP 77 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHH-----HHHHHHHHHHHHhhhhccccCC
Confidence 456788899988888765422 1 88888777766334333 333333222110 01111
Q ss_pred ccccccchhHHHHHHHhhcCCCcHHHH--HHHHHHHh-hccCCCcHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 025226 67 RGKKLIGKEALFVILGLKRFKDDEEKL--QKFIKTHV-LRLLKMDIVA-VLIELERQEETILAVKIFDIIRKQDWYQPDA 142 (256)
Q Consensus 67 ~~~~~~~~~~~~~i~~~~~~~~~~~a~--~~~~~~~~-~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 142 (256)
.+..+--.....++.+|...+..+... ..+++.+. +.+-+|...- -|+.+.+.++.+.+.+++.+|...- ....
T Consensus 78 ~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e 155 (278)
T PF08631_consen 78 DGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSE 155 (278)
T ss_pred cHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--cccc
Confidence 111111223344566776666554321 13333443 3445566653 4777777899999999999999873 4355
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHh-hHH-HHHHH---HHHcCC------hhHHHHHHHHHHhC-C
Q 025226 143 YIYKDLIIAL---ARTGKMNEAMQVWESMRKEDLFPDSQ-TYT-EVIRG---FLKDGS------PADAMNIYEDMIKS-P 207 (256)
Q Consensus 143 ~~y~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~-~li~~---~~~~g~------~~~a~~~~~~M~~~-g 207 (256)
..+...+..+ .... ...+...++.+...-+.|... -.. .++.- ..+.++ ++...++++...+. +
T Consensus 156 ~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~ 234 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLG 234 (278)
T ss_pred chHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhc
Confidence 6666666666 4433 456777777776654555443 111 11111 111111 44455556644332 3
Q ss_pred CCCChhHHH---HHHH----HhcCCCChHHHHH
Q 025226 208 DPPEELPFR---ILLK----GLLPHPLLRSKVK 233 (256)
Q Consensus 208 ~~p~~~t~~---~li~----~~~~~g~~~~a~~ 233 (256)
-+.+..+-. ++|. .+.+.+++++|.+
T Consensus 235 ~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~ 267 (278)
T PF08631_consen 235 KQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIE 267 (278)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 333444433 3332 3445678887776
No 292
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=69.94 E-value=37 Score=25.48 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=18.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
..++.-.|.++++++.+.+..++..|----|..+.+.|-+
T Consensus 37 ~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 37 LQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred hcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3333444555555555544444444433444444444443
No 293
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=69.50 E-value=22 Score=22.62 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
+.+.|.+++..++... +.++..||++-..+.++
T Consensus 12 DtEmA~~mL~DLr~de--kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE--KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHhcchh--hcChHHHHHHHHHHHHc
Confidence 5688888888888775 77888999988877776
No 294
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=69.45 E-value=13 Score=23.02 Aligned_cols=50 Identities=10% Similarity=0.180 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
.|....++.++..+++-.-.+++...+.+..++|. .+..+|---++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666654 355555555555554
No 295
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.17 E-value=8.5 Score=23.53 Aligned_cols=46 Identities=24% Similarity=0.326 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
++...++.+.+... .-|-.--=.+|.||...|++++|.++.+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555555555431 12333344789999999999999999988764
No 296
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.01 E-value=10 Score=31.28 Aligned_cols=48 Identities=13% Similarity=0.322 Sum_probs=39.0
Q ss_pred CCCCCHhh-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 025226 172 DLFPDSQT-YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219 (256)
Q Consensus 172 g~~p~~~t-~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li 219 (256)
-+.||..+ ||.-|..-.+.||+++|+.+++|-++.|+.--..||-.-+
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 35566655 6799999999999999999999999999876666665443
No 297
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.92 E-value=12 Score=21.17 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=15.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 148 LIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
|-.+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345666777777777777766643
No 298
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=68.34 E-value=58 Score=30.25 Aligned_cols=50 Identities=16% Similarity=0.064 Sum_probs=28.1
Q ss_pred HHhhcCCCcH--HHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHH
Q 025226 81 LGLKRFKDDE--EKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDI 131 (256)
Q Consensus 81 ~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 131 (256)
.+|.+-++.. +.+.++ ++++++|-.|+..-+-..|+-.|.+.+|-++|.+
T Consensus 606 kAY~rVRdl~~L~li~EL-~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 606 KAYIRVRDLRYLELISEL-EERKKRGETPNDLLLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHhccHHHHHHHHH-HHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4566555443 333333 5677888888876444555555555555555543
No 299
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=67.99 E-value=84 Score=27.49 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=24.2
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 154 RTGKMNEAMQVWESMRKE---DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+.|.+.+|.+.+-+-... ++.|+...|-..-....+.|+.++|+.--++-.
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 345555555555554431 333444444444444445555555555444433
No 300
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.52 E-value=40 Score=31.99 Aligned_cols=74 Identities=9% Similarity=0.101 Sum_probs=31.9
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
+.|+.++|.+.+.+.. |. .+..-+|.-|-.......--..++.+.+.| ..+...-+.||.+|.+.++.++..++
T Consensus 380 ~Kgdf~~A~~qYI~tI---~~-le~s~Vi~kfLdaq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETI---GF-LEPSEVIKKFLDAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred hcCCHHHHHHHHHHHc---cc-CChHHHHHHhcCHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHHHHHH
Confidence 4566666654443222 11 122234444444444444444444444444 33344444455555554444444333
No 301
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=66.81 E-value=42 Score=27.72 Aligned_cols=109 Identities=8% Similarity=0.092 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-c
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK-D 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~ 190 (256)
++.-..+.+++.+..+.+..++ ....-...|..+...|++..|.++..+..+. ...++.+ .+... .
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-----l~~l~~~-~c~~~L~ 170 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQL-----LEELKGY-SCVRHLS 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----HHhcccc-hHHHHHh
Confidence 4455555555555555555555 3334555667777778888888887777652 0011111 00000 1
Q ss_pred CChhHHHHHHHHHHhC---C--CCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 191 GSPADAMNIYEDMIKS---P--DPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~---g--~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.++++-.....++.+. + ...|+..|..++.+|.-.|+...+.+
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHH
Confidence 2233333333333322 1 13577788888888877776666554
No 302
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=66.80 E-value=57 Score=26.36 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=46.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPD-AYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~ 188 (256)
...-.+.|++++|.+.|+.+.++.+..|= ..+---++-++-+.+++++|....++..+. .-.|| .-|-.-|.+++
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence 33445678888888888888877522222 233334455666778888888888877764 33333 34555555555
No 303
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=66.73 E-value=43 Score=23.75 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWES 167 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 167 (256)
+.+.++|+.|.+.|-..--+.-|...-..+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 477777777776662234455666666666677777777777653
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.60 E-value=52 Score=24.57 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=50.1
Q ss_pred HHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 025226 144 IYKDLIIAL---ARTGKMNEAMQVWESMRKEDLFPDS---QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRI 217 (256)
Q Consensus 144 ~y~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~ 217 (256)
+.+.||..+ .+.++.++++.+++.+.. +.|.. .++...+ +.+.|++.+|..+|++..+.. |...-...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kA 82 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHH
Confidence 344454444 466899999999999987 34554 4444443 457899999999999987663 34333445
Q ss_pred HHHHhcCC
Q 025226 218 LLKGLLPH 225 (256)
Q Consensus 218 li~~~~~~ 225 (256)
|+..|...
T Consensus 83 LlA~CL~~ 90 (160)
T PF09613_consen 83 LLALCLYA 90 (160)
T ss_pred HHHHHHHH
Confidence 55544433
No 305
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=65.49 E-value=93 Score=27.11 Aligned_cols=97 Identities=16% Similarity=0.118 Sum_probs=44.6
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHc---CCHHHHHHHHHHHHhcCCCCCCHHHHHH-
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-----AVLIELERQ---EETILAVKIFDIIRKQDWYQPDAYIYKD- 147 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~~---~~~~~a~~~~~~m~~~~~~~p~~~~y~~- 147 (256)
...+...|..|+++.++..+-......-+.++.. .|+.+-+.+ .+...|...-.+-.+ ..||.+--..
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K---L~pdlvPaav~ 268 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK---LAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCccchHHHH
Confidence 3445566666666666633322222233334433 233333221 233333333322221 3344332222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 148 LIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
--.++.+.|+..++-.+++.+=+..-+|+
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChH
Confidence 24556666777777777777666554454
No 306
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.85 E-value=54 Score=24.19 Aligned_cols=50 Identities=18% Similarity=0.397 Sum_probs=39.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPD---SQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
..++.++++.+++.|.. +.|+ ..+|-..| +...|++++|.++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 47999999999999987 3354 34555444 357899999999999999875
No 307
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=63.58 E-value=52 Score=30.61 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCCHhhH
Q 025226 108 DIVAVLIELERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGKMN------EAMQVWESMRKEDLFPDSQTY 180 (256)
Q Consensus 108 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~y~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~t~ 180 (256)
+..+|+.+|..+|++..+.++++.+...+. -+.-...||..|..+.+.|.++ .|.+++++- -+.-|..||
T Consensus 30 ~~~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~ 106 (1117)
T COG5108 30 GTASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTY 106 (1117)
T ss_pred chHHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHH
Confidence 344799999999999999999999875531 2344567888899999998754 333444433 356788999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 181 TEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
..|+.+-..--.-.-..-++.+...
T Consensus 107 all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 107 ALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHHhhcChHhHHhccHHHHHHHH
Confidence 9988876653333334444444443
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=63.56 E-value=81 Score=25.76 Aligned_cols=99 Identities=8% Similarity=0.040 Sum_probs=66.5
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 025226 112 VLIELERQEE---TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~---~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 188 (256)
+.+++...+. .++|.++.+.+.+.. .-.+.+|-.-|..+.+.++.+++.+.+.+|...- .-....+..++..+-
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~ 166 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIK 166 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 6666766665 456777888887664 2235556566777777999999999999999862 113455666666653
Q ss_pred H--cCChhHHHHHHHHHHhCCCCCChh
Q 025226 189 K--DGSPADAMNIYEDMIKSPDPPEEL 213 (256)
Q Consensus 189 ~--~g~~~~a~~~~~~M~~~g~~p~~~ 213 (256)
+ ......|...+..+....+.|+..
T Consensus 167 ~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 167 QLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 2 234567888888888776666664
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=63.24 E-value=16 Score=20.62 Aligned_cols=26 Identities=23% Similarity=0.488 Sum_probs=22.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCC
Q 025226 183 VIRGFLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
|-.+|...|+.+.|.+++++....|-
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 55789999999999999999886543
No 310
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.11 E-value=57 Score=23.82 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=41.2
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 164 VWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 164 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
+.+.+++.|++++..= -.++..+.+.++.-.|.++++++.+.+...+..|.---|+.+...|-+
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 4445555666555432 345666666666677778888777777666677766677777777644
No 311
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.93 E-value=37 Score=22.00 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=31.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCC-CCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQ-PDA-YIYKDLIIALARTGKMNEAMQVW 165 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~-p~~-~~y~~li~~~~~~g~~~~a~~~~ 165 (256)
..++-++|+.+|....+.- .. |+. .+...++.+|+..|++.++.++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~-~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKI-TDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667778888887665553 22 222 46777888888888888776543
No 312
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=62.38 E-value=53 Score=30.46 Aligned_cols=82 Identities=21% Similarity=0.283 Sum_probs=59.0
Q ss_pred HHHHH-HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh-----------H
Q 025226 113 LIELE-RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT-----------Y 180 (256)
Q Consensus 113 i~~~~-~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-----------~ 180 (256)
+..|. +...+..|-++|..|-.. .+++......+++.+|..+-++.++ +.||+.. |
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhH
Confidence 44443 345677788888776533 3567788889999999999988776 4566543 3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 181 TEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
---=.+|-++|+..+|.++++.+-..
T Consensus 821 eEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 821 EEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 44456788999999999999887654
No 313
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=62.12 E-value=33 Score=27.50 Aligned_cols=64 Identities=13% Similarity=0.194 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CC-CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRK----ED-LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
-...---+-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+--+|.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 333444555556666666666666666542 12 23444555566666666666666665555443
No 314
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=62.07 E-value=67 Score=26.72 Aligned_cols=89 Identities=18% Similarity=0.160 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHH
Q 025226 140 PDAYIYKDLIIALA----RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF 215 (256)
Q Consensus 140 p~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~ 215 (256)
.+...+.-++..|- .-.++.-|+..=+.+.. .=..+++..-+.|..+|.+.+|.++.++..+.. +.+...|
T Consensus 242 ltide~kelv~~ykgdyl~e~~y~Waedererle~----ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~n 316 (361)
T COG3947 242 LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQ----LYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDN 316 (361)
T ss_pred cCHHHHHHHHHHhcCCcCCccccccccchHHHHHH----HHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHH
Confidence 56667777777772 12222223222222221 112345666778899999999999998877652 3477778
Q ss_pred HHHHHHhcCCCChHHHHH
Q 025226 216 RILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 216 ~~li~~~~~~g~~~~a~~ 233 (256)
-.++..|...|+--++.+
T Consensus 317 k~lm~~la~~gD~is~~k 334 (361)
T COG3947 317 KGLMASLATLGDEISAIK 334 (361)
T ss_pred HHHHHHHHHhccchhhhh
Confidence 889999999998444443
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.76 E-value=1.5e+02 Score=28.38 Aligned_cols=144 Identities=10% Similarity=0.012 Sum_probs=94.0
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHH----HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIEL----ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~----~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
.....+..+++..-.+-|+ ...+..+..++.. .+...| .+.|++++|..-|-+-... +.|+ -+|
T Consensus 336 ~le~kL~iL~kK~ly~~Ai----~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAI----NLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHH----HHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CChH-----HHH
Confidence 3334466666666666665 2344556656655 355444 4679999998887766533 3443 457
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
.-|....++.+-...++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....++-|.+.+-++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 7778888888999999999999885 56666899999999998888777766544 2221 112344555555555555
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
+|..
T Consensus 481 ~a~~ 484 (933)
T KOG2114|consen 481 EAEL 484 (933)
T ss_pred HHHH
Confidence 5544
No 316
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.87 E-value=95 Score=25.65 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=69.4
Q ss_pred HHHHHH-HcCCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 112 VLIELE-RQEETILAVKIFDIIRKQDWY---QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 112 li~~~~-~~~~~~~a~~~~~~m~~~~~~---~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
++...| ...-.+.|.+.|+.....+.- ..++..-.+++...++.|..++-..+++..... ++...-..++.+.
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aL 211 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSAL 211 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHH
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhh
Confidence 344444 112357888888887775312 456677778888888888877777777776653 5778888999999
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 188 LKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 188 ~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
+-..+.+...++++.....+..++... ..++.++.
T Consensus 212 a~~~d~~~~~~~l~~~l~~~~v~~~d~-~~~~~~~~ 246 (324)
T PF11838_consen 212 ACSPDPELLKRLLDLLLSNDKVRSQDI-RYVLAGLA 246 (324)
T ss_dssp TT-S-HHHHHHHHHHHHCTSTS-TTTH-HHHHHHHH
T ss_pred hccCCHHHHHHHHHHHcCCcccccHHH-HHHHHHHh
Confidence 988898888888888888652333333 44455554
No 317
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=60.66 E-value=60 Score=27.47 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=43.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHhhH--HHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCChh-HHH
Q 025226 148 LIIALARTGKMNEAMQVWESMRKE---DLFPDSQTY--TEVIRGFLKDGSPADAMNIYEDMIK-----SPDPPEEL-PFR 216 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~M~~-----~g~~p~~~-t~~ 216 (256)
++...-+.++.++|.+.++++.+. --.||.+.| +.+.+.+...|+..++.+++.+.++ .|+.|+.+ .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 344445556777777777777653 233555554 3455556667777777777776665 46666333 344
Q ss_pred HHHHHh
Q 025226 217 ILLKGL 222 (256)
Q Consensus 217 ~li~~~ 222 (256)
.+-.-|
T Consensus 161 ~lssqY 166 (380)
T KOG2908|consen 161 SLSSQY 166 (380)
T ss_pred HHHHHH
Confidence 443333
No 318
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=60.39 E-value=1.1e+02 Score=26.22 Aligned_cols=146 Identities=13% Similarity=0.121 Sum_probs=79.0
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH----HHHH---
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYI----YKDL--- 148 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~----y~~l--- 148 (256)
-..|...|.+..|+..+- ....+..|.. .+-..+...|+.+.++....+..+.+ ||-.. |..|
T Consensus 196 akc~i~~~e~k~AI~Dlk---~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld---pdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLK---QASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD---PDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHhcCcHHHHHHHHH---HHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC---cchhhHHHHHHHHHHH
Confidence 456777788887775332 1222333322 35555667777777777777776553 44321 1111
Q ss_pred H------HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH---HHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHHHH
Q 025226 149 I------IALARTGKMNEAMQVWESMRKEDLFPDSQTYT---EVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFRIL 218 (256)
Q Consensus 149 i------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~---~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~~l 218 (256)
. ......+++-++.+-.+...+..-....++|| .+=.+|...|++-+|.+...+..+. .|| ..++.-=
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dR 347 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDR 347 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHH
Confidence 1 11123455666666666555543221233333 3344455566777777777766554 344 5666656
Q ss_pred HHHhcCCCChHHHHH
Q 025226 219 LKGLLPHPLLRSKVK 233 (256)
Q Consensus 219 i~~~~~~g~~~~a~~ 233 (256)
.++|.-..++++|+.
T Consensus 348 AeA~l~dE~YD~AI~ 362 (504)
T KOG0624|consen 348 AEAYLGDEMYDDAIH 362 (504)
T ss_pred HHHHhhhHHHHHHHH
Confidence 666666666666665
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=60.17 E-value=14 Score=18.46 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=11.5
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 025226 151 ALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~ 170 (256)
+|.+.|+.++|.+.|++..+
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 44455666666666666554
No 320
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.07 E-value=99 Score=25.59 Aligned_cols=92 Identities=14% Similarity=0.200 Sum_probs=63.6
Q ss_pred HHHHHHH-c-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 025226 112 VLIELER-Q-EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~-~-~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~~~ 188 (256)
+++.... . -.+..-.++.+-+...-+-.++..+-.+.|..+++.+++.+-.++++.-... +..-|..-|..+|..-.
T Consensus 170 LL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~ 249 (292)
T PF13929_consen 170 LLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIV 249 (292)
T ss_pred HHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHH
Confidence 4444443 1 1344445555555444114788888899999999999999999999877664 56668888999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 025226 189 KDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g 207 (256)
+.|+.. +.+.+...|
T Consensus 250 ~sgD~~----~~~kiI~~G 264 (292)
T PF13929_consen 250 ESGDQE----VMRKIIDDG 264 (292)
T ss_pred HcCCHH----HHHHHhhCC
Confidence 999874 444444443
No 321
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=59.94 E-value=28 Score=23.99 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 192 (256)
.+...+..-.|.++++++.+.+..++..|---.++.+.+.|-
T Consensus 9 ~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 9 VLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 333333334445555555544444444444444444444443
No 322
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=59.63 E-value=1e+02 Score=25.51 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=73.5
Q ss_pred cCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHH
Q 025226 104 LLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYT 181 (256)
Q Consensus 104 ~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~ 181 (256)
.+.|+.. +++....+.|+.+.-..+++.... .++...-..++.+++...+.+...++++.....+ +.+ .. ..
T Consensus 166 ~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~-~d-~~ 239 (324)
T PF11838_consen 166 SIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRS-QD-IR 239 (324)
T ss_dssp TS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-T-TT-HH
T ss_pred ccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCccccc-HH-HH
Confidence 3455555 577788888887776666666663 4588899999999999999999999999988854 433 33 45
Q ss_pred HHHHHHHHcCCh--hHHHHHHHH---HHhCCCCCChhHHHHHHHHhcCCC
Q 025226 182 EVIRGFLKDGSP--ADAMNIYED---MIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 182 ~li~~~~~~g~~--~~a~~~~~~---M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
.++.++...+.. +.+.+++.+ -......++..+...++..+...-
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~~~~~~~~~~~~~~~~~ 289 (324)
T PF11838_consen 240 YVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGTNSSALSRVIKSFAGNF 289 (324)
T ss_dssp HHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-TTSHCCHHHHHCCCTT-
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhccC
Confidence 566666644544 667776653 122234444447778888776644
No 323
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=59.59 E-value=8.8 Score=23.65 Aligned_cols=43 Identities=16% Similarity=0.147 Sum_probs=26.3
Q ss_pred HHHhhccCCCcHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCCCH
Q 025226 98 KTHVLRLLKMDIVAVLIELER-QEETILAVKIFDIIRKQDWYQPDA 142 (256)
Q Consensus 98 ~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~p~~ 142 (256)
......|+.+.... .++.. .=|++.|...|.+++..|.+.|+.
T Consensus 18 ~~~~~Tgmn~~~s~--~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 18 AFSAQTGMNAEYSQ--MCLEDNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred HHHHHHCCCHHHHH--HHHHHcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 33445555554432 12233 337999999999999888555554
No 324
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.48 E-value=9 Score=23.76 Aligned_cols=53 Identities=8% Similarity=0.097 Sum_probs=42.4
Q ss_pred CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 173 LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 173 ~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
+.|+...++.++..+++-.-.+++...+.+..++|. .+..+|---++.+++..
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQ 56 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQ 56 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHH
Confidence 347888999999999999999999999999999986 45677777777776643
No 325
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=59.43 E-value=22 Score=17.92 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+|..+=..|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445555566666777777777666554
No 326
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=59.40 E-value=40 Score=28.70 Aligned_cols=92 Identities=8% Similarity=0.040 Sum_probs=62.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
+-|.+.|.+++|+..|..-.... ..|.++|..--.+|.+..++..|+.=-+.... .-...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~--P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia--------Ld~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY--PHNPVYHINRALAYLKQKSFAQAEEDCEAAIA--------LDKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC--CCCccchhhHHHHHHHHHHHHHHHHhHHHHHH--------hhHHHHHHHHHHHHH
Confidence 45788899999999998766443 34889999999999998888877665554443 123557788877766
Q ss_pred hHHHHHHHHHHhC-----CCCCChhHH
Q 025226 194 ADAMNIYEDMIKS-----PDPPEELPF 215 (256)
Q Consensus 194 ~~a~~~~~~M~~~-----g~~p~~~t~ 215 (256)
.+++.-..+.++. .+.|+..-.
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 6666655555432 345664433
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.91 E-value=1.4e+02 Score=26.90 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=64.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA---RTGKMNEAMQVWESMRKE-DLFPDSQTYTEVIRG 186 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~---~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~li~~ 186 (256)
++++-+...|-.++|..+|..+.... +|+...|.-+|..=. .+| +.-+.++++.|... | .|+..|---+.-
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKE 539 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHh
Confidence 47777788888888888888888875 788888888776432 333 77777888887764 6 677777777766
Q ss_pred HHHcCChhHHHHHHHHHH
Q 025226 187 FLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M~ 204 (256)
=...|..+.+-.++.+..
T Consensus 540 e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 540 ELPLGRPENCGQIYWRAM 557 (568)
T ss_pred hccCCCcccccHHHHHHH
Confidence 667777777777766543
No 328
>PF13934 ELYS: Nuclear pore complex assembly
Probab=58.80 E-value=90 Score=24.73 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=67.5
Q ss_pred hccCCCcHHHHHHHHHH--cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 025226 102 LRLLKMDIVAVLIELER--QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT 179 (256)
Q Consensus 102 ~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 179 (256)
.-++.+.....+.+|.. .+++++|.+.+.+- . +.|+-. .-++.++...|+.+.|..++.... |+..+
T Consensus 72 ~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~p---s-~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~-----p~l~s 140 (226)
T PF13934_consen 72 AFGIPPKYIKFIQGFWLLDHGDFEEALELLSHP---S-LIPWFP--DKILQALLRRGDPKLALRYLRAVG-----PPLSS 140 (226)
T ss_pred HhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCC---C-CCcccH--HHHHHHHHHCCChhHHHHHHHhcC-----CCCCC
Confidence 45666666678888765 45666776666322 1 222211 246777777888888888888755 33333
Q ss_pred H---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc----CCCChHHHHH
Q 025226 180 Y---TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL----PHPLLRSKVK 233 (256)
Q Consensus 180 ~---~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~----~~g~~~~a~~ 233 (256)
. +.++.. ..++.+.+|+.+-+...+.. ....+..+++.+. +.+..++-+.
T Consensus 141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~~~~~~~Ll~ 197 (226)
T PF13934_consen 141 PEALTLYFVA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECARSGRLDELLS 197 (226)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhhhhHHHHHHh
Confidence 3 233333 55688888888777665531 1445555555555 4444444333
No 329
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=57.60 E-value=1.1e+02 Score=28.61 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=59.3
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhh-----ccCCCcHHHHHHHHHHcCCHH------HHHHHHHHHHhcCCCCCCHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVL-----RLLKMDIVAVLIELERQEETI------LAVKIFDIIRKQDWYQPDAYIY 145 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~~~~~p~~~~y 145 (256)
..+..+|...|++..+. .+++.... +.+.|+++-.|+.+.+.|.++ .|.+.+++-. +.-|..||
T Consensus 32 ~sl~eacv~n~~~~rs~-~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~----ln~d~~t~ 106 (1117)
T COG5108 32 ASLFEACVYNGDFLRSK-QLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR----LNGDSLTY 106 (1117)
T ss_pred HHHHHHHHhcchHHHHH-HHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh----cCCcchHH
Confidence 36788999999998886 34444322 235567777899999999763 3444444443 66799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
..|+.+-.+-..-....-++.+...
T Consensus 107 all~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 107 ALLCQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHHHHhhcChHhHHhccHHHHHHHH
Confidence 9998887765555555555555554
No 330
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.51 E-value=60 Score=22.34 Aligned_cols=27 Identities=15% Similarity=0.342 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
-|..|+..|-..|..++|.+++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 489999999999999999999999887
No 331
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=57.11 E-value=59 Score=23.62 Aligned_cols=80 Identities=11% Similarity=0.128 Sum_probs=56.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCChhHHHHHH-H--HhcCCC
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS-PDPPEELPFRILL-K--GLLPHP 226 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~-g~~p~~~t~~~li-~--~~~~~g 226 (256)
+.+..|+++.|.+.|.+-... .+-....||.=-.++--.|+.++|++=+++-.+. |-+ +...+.+.+ + .|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 457889999999999987763 2236788999999999999999999999988765 444 333332222 2 244456
Q ss_pred ChHHHH
Q 025226 227 LLRSKV 232 (256)
Q Consensus 227 ~~~~a~ 232 (256)
+.+.|.
T Consensus 130 ~dd~AR 135 (175)
T KOG4555|consen 130 NDDAAR 135 (175)
T ss_pred chHHHH
Confidence 555443
No 332
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.99 E-value=76 Score=27.74 Aligned_cols=87 Identities=16% Similarity=0.103 Sum_probs=64.6
Q ss_pred HHcCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH--cCC
Q 025226 117 ERQEETILAVKIFDIIRKQD--WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK--DGS 192 (256)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~--~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g~ 192 (256)
.+.|.+.+|.+.|.+-.... +..|++..|-..-....+.|+.++|..--++..+- -+..+.--+.++-|. .++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i---D~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI---DSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc---CHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999887553 26777888888888888999999999888877662 234555555555554 467
Q ss_pred hhHHHHHHHHHHhC
Q 025226 193 PADAMNIYEDMIKS 206 (256)
Q Consensus 193 ~~~a~~~~~~M~~~ 206 (256)
+++|.+-|+.-.+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888765543
No 333
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=56.83 E-value=97 Score=24.62 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=52.9
Q ss_pred cHHH-HHHHHHHcCCHHHHHHHHHHHHhcCCCCC---CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 025226 108 DIVA-VLIELERQEETILAVKIFDIIRKQDWYQP---DAYIYK--DLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT 181 (256)
Q Consensus 108 ~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 181 (256)
|... +|+-+...|..+ |-..|..- .| +.| |..+++ .-|......|++++|.+..++....-+.-|...+=
T Consensus 28 d~n~LVmnylv~eg~~E-aA~~Fa~e--~~-i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F 103 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVE-AAEKFAKE--SG-IKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFF 103 (228)
T ss_pred hHHHHHHHHHHhccHHH-HHHHhccc--cC-CCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHH
Confidence 4445 455555555444 44444432 22 333 444443 45777788888888888888877555555543333
Q ss_pred HHHHH----HHHcCChhHHHHHHHHHH
Q 025226 182 EVIRG----FLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 182 ~li~~----~~~~g~~~~a~~~~~~M~ 204 (256)
.|..- ..+.|..++|+++.+.=.
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 33221 346777888888877544
No 334
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.47 E-value=53 Score=21.40 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAY 143 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 143 (256)
++++-+.++.--++|+++.+.|.++| ..+..
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG--Ei~~E 66 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG--EITPE 66 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC--CCCHH
Confidence 78888889999999999999999999 44443
No 335
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=54.16 E-value=1.6e+02 Score=26.14 Aligned_cols=76 Identities=13% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.|=+...+.|+++-|++.|.+.. -|..|+-.|.-.|+.++-.++-+.....| -+|....++.-.
T Consensus 352 ~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~l 415 (443)
T PF04053_consen 352 QLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLL 415 (443)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHc
Confidence 47777788899999998887755 37788889999999988888888777654 267777777788
Q ss_pred CChhHHHHHHHH
Q 025226 191 GSPADAMNIYED 202 (256)
Q Consensus 191 g~~~~a~~~~~~ 202 (256)
|++++..+++.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999888888765
No 336
>PRK09462 fur ferric uptake regulator; Provisional
Probab=54.12 E-value=70 Score=23.28 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=41.9
Q ss_pred HHHhhccCCCcHH--HHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 98 KTHVLRLLKMDIV--AVLIELERQ-EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 98 ~~~~~~~~~~~~~--~li~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
+.+...|++++.. .++..+... +..-.|.++++.+.+.+ ...+..|-=--|..+...|-+
T Consensus 6 ~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~-~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 6 TALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCCE
Confidence 3455677776655 688888875 45778999999999887 566665554555666666654
No 337
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.98 E-value=1.2e+02 Score=24.71 Aligned_cols=91 Identities=21% Similarity=0.063 Sum_probs=65.1
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhc---cCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhc
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLR---LLKMDIV-AVLIELERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALART 155 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~y~~li~~~~~~ 155 (256)
..+.+.|++.+|...|.+-.... -..|+.. =|-.++...|++++|-.+|..+.+.-+ ...-+...=-|-.+..+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 34567788888877665433332 1223333 389999999999999999999987741 122335555666778899
Q ss_pred CCHHHHHHHHHHHHhC
Q 025226 156 GKMNEAMQVWESMRKE 171 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~ 171 (256)
|+.++|...|++..+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999998874
No 338
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=53.67 E-value=1e+02 Score=23.76 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=31.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
..+-.|.+.|.+++|.+++++..+. |+......-+....+..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~d----~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFSD----PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhcC----CCchhHHHHHHHHHHccc
Confidence 3677899999999999999998854 455555555555555543
No 339
>PRK09462 fur ferric uptake regulator; Provisional
Probab=53.43 E-value=85 Score=22.83 Aligned_cols=34 Identities=12% Similarity=0.092 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 193 ~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
.-.|.++++++.+.+...+..|.---|+.+.+.|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444444444444444444444444
No 340
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=53.19 E-value=79 Score=22.41 Aligned_cols=57 Identities=9% Similarity=0.061 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHh-CCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHH
Q 025226 158 MNEAMQVWESMRK-EDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFR 216 (256)
Q Consensus 158 ~~~a~~~~~~m~~-~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~ 216 (256)
++.+-+++++..+ .|+.- +..+-..+|+...+.|-+++...+++-...+|. +++||+
T Consensus 38 ~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~RN~--tsHtYd 96 (123)
T TIGR01987 38 FELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDDRNI--TSHTYD 96 (123)
T ss_pred HHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHHhCc--ccccCC
Confidence 3444444444333 24422 244556666666666666554433333333343 344443
No 341
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=52.28 E-value=1.5e+02 Score=25.40 Aligned_cols=158 Identities=13% Similarity=0.126 Sum_probs=87.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
+..+.-.|+...++. +.....+ .-+....+ .--.+|...|++..|+.=+....+.. .-++.++--+-..+-.-|+
T Consensus 162 l~s~~~~GD~~~ai~-~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIE-MITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HHHHhcCCchhhHHH-HHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhh
Confidence 344455566666653 3333322 22211222 23455667777777776666555553 4455666556666667777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhh----HHHH---------HHHHHHcCChhHHHHHHHHHHhCCCC---CChhHHHHHHHH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQT----YTEV---------IRGFLKDGSPADAMNIYEDMIKSPDP---PEELPFRILLKG 221 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t----~~~l---------i~~~~~~g~~~~a~~~~~~M~~~g~~---p~~~t~~~li~~ 221 (256)
.+.+.....+..+ +.||.-. |-.| +......+++.++.+-.+...+.... .....+..+-.+
T Consensus 239 ~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 239 AENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 7877777777666 3466422 2111 11123345666666666665554332 223344567778
Q ss_pred hcCCCChHHHHH--hhhhhcCCC
Q 025226 222 LLPHPLLRSKVK--KDFEELFPE 242 (256)
Q Consensus 222 ~~~~g~~~~a~~--~~~~~~~p~ 242 (256)
+...|.+.+|+. ...-.+.||
T Consensus 317 ~~~d~~~~eAiqqC~evL~~d~~ 339 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDIDPD 339 (504)
T ss_pred ccccCCHHHHHHHHHHHHhcCch
Confidence 888899999988 344445555
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.19 E-value=25 Score=16.34 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
|..+-..|...|++++|...|++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555566666666555544
No 343
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=51.97 E-value=30 Score=24.12 Aligned_cols=48 Identities=17% Similarity=0.105 Sum_probs=35.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
.++....+.+..-.|.++++.|.+.|...+..|.---|+.+.+.|.+.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~ 59 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIR 59 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEE
Confidence 456666666667788888888888888888888777788888877544
No 344
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=50.77 E-value=1.6e+02 Score=25.11 Aligned_cols=82 Identities=15% Similarity=0.265 Sum_probs=56.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC--CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHh-hHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDW--YQPDAYIYK--DLIIALARTGKMNEAMQVWESMRK-----EDLFPDSQ-TYT 181 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~-t~~ 181 (256)
++...-+.+|.++|.+.++++.+.-. -.|+.+.|- .....+...|+.+++.+++++.++ .|++|++. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 56666677899999999998874410 256777764 445666678999999999998887 58888664 355
Q ss_pred HHHHHHHH-cCCh
Q 025226 182 EVIRGFLK-DGSP 193 (256)
Q Consensus 182 ~li~~~~~-~g~~ 193 (256)
.+=+-|-+ .|++
T Consensus 161 ~lssqYyk~~~d~ 173 (380)
T KOG2908|consen 161 SLSSQYYKKIGDF 173 (380)
T ss_pred HHHHHHHHHHHhH
Confidence 55444443 3444
No 345
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=50.29 E-value=1.4e+02 Score=24.26 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=100.6
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.-...-.+.|++++|...| +.+.. ....|-.. .++-++.+.++.++|....++..+..+-.| -.-|-.-|.++
T Consensus 39 ~~g~~~L~~gn~~~A~~~f-e~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-n~dY~~YlkgL 116 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYF-EALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-NADYAYYLKGL 116 (254)
T ss_pred HHHHHHHhcCCHHHHHHHH-HHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-ChhHHHHHHHH
Confidence 3344557899999998655 45543 33333222 367777899999999999999988863334 45566667666
Q ss_pred Hhc-------CCHHHHHHHHHHHHh-------CCCCCCHhhH------------HHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 153 ART-------GKMNEAMQVWESMRK-------EDLFPDSQTY------------TEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 153 ~~~-------g~~~~a~~~~~~m~~-------~g~~p~~~t~------------~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
+.. .+...+..-|..|.+ +...||+..- -.+-+-|.+.|.+.-|..-+++|.+.
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 643 344444444444433 2344554331 13445688999999999999999987
Q ss_pred CCCCChhH---HHHHHHHhcCCCChHHHHH
Q 025226 207 PDPPEELP---FRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 207 g~~p~~~t---~~~li~~~~~~g~~~~a~~ 233 (256)
..-+..+ .-.|.++|-..|..++|-+
T Consensus 197 -y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 197 -YPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred -cccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 3333333 4466788999998888766
No 346
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.28 E-value=98 Score=24.79 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH----hCCC-CCChhHHHHHHHHhcCCCChHHHHH
Q 025226 180 YTEVIRGFLKDGSPADAMNIYEDMI----KSPD-PPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~M~----~~g~-~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.--|-.-|.+.|++++|..+|+.+. +.|+ .+...+...+.+++.+.|+.++.+.
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3456667888899999999998875 3454 4677777788888888888877665
No 347
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=50.11 E-value=42 Score=21.49 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=5.9
Q ss_pred HHHHHHhCCCCCC
Q 025226 199 IYEDMIKSPDPPE 211 (256)
Q Consensus 199 ~~~~M~~~g~~p~ 211 (256)
+.+-+.+.|..|+
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 4444445555554
No 348
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=49.69 E-value=2e+02 Score=25.95 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=78.8
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHH--HHHHHHHcCCHHHHHHHHHHHHhcCC------------------
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVA--VLIELERQEETILAVKIFDIIRKQDW------------------ 137 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~------------------ 137 (256)
.+|...-+.++.++.++.-. +. -.+.||+.+ +|-+--.+.-..+|+++|.+-.+.|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~-eA--Lei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAK-EA--LEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHH-HH--HHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 44555556666665553222 22 123355542 22222234556677777666554430
Q ss_pred -CCCCH--HHH--HHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CC
Q 025226 138 -YQPDA--YIY--KDLIIALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-PP 210 (256)
Q Consensus 138 -~~p~~--~~y--~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~-~p 210 (256)
...++ ..| --+-.+.-+.|+.++|.+.|.+|.+.. ..-+....-.||.++...+...++..++.+-.+... +-
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS 329 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS 329 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch
Confidence 01121 111 223333446699999999999998642 222345677899999999999999999998654322 22
Q ss_pred ChhHHHHHH
Q 025226 211 EELPFRILL 219 (256)
Q Consensus 211 ~~~t~~~li 219 (256)
-...|+..+
T Consensus 330 Ati~YTaAL 338 (539)
T PF04184_consen 330 ATICYTAAL 338 (539)
T ss_pred HHHHHHHHH
Confidence 344555544
No 349
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=48.67 E-value=92 Score=21.82 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
++...+.++=+..| ..|..++|.+..+.+
T Consensus 7 e~I~~iVe~RrqEG-A~~~Dvs~SSv~sML 35 (118)
T PRK13713 7 EKINAIVEERRQEG-AREKDVSFSSVASML 35 (118)
T ss_pred HHHHHHHHHHHHcC-CCccCccHHHHHHHH
Confidence 33344444444444 444445555544444
No 350
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=48.62 E-value=33 Score=16.71 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDL 148 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~l 148 (256)
+.+.|..+|+.+.+.. .-+...|...
T Consensus 2 ~~~~~r~i~e~~l~~~--~~~~~~W~~y 27 (33)
T smart00386 2 DIERARKIYERALEKF--PKSVELWLKY 27 (33)
T ss_pred cHHHHHHHHHHHHHHC--CCChHHHHHH
Confidence 4455555555555442 2344444433
No 351
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=48.55 E-value=1e+02 Score=22.22 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 127 ~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
+.++.+..-. +.|++.....-+.++-+-+++.-|.++|+-.+.+
T Consensus 70 kglN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344555555 6777777777777777777777777777776653
No 352
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=48.08 E-value=2.2e+02 Score=27.63 Aligned_cols=84 Identities=15% Similarity=0.249 Sum_probs=50.7
Q ss_pred HHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH---------------HHHHHH
Q 025226 123 ILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY---------------TEVIRG 186 (256)
Q Consensus 123 ~~a~~~~~~m-~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~---------------~~li~~ 186 (256)
+...+.+.+. .+.| +..+......++... .|++..+..+++++... ...+.+|+ ..+|++
T Consensus 182 ~~l~~~L~~il~~EG-v~id~eal~lLa~~s--gGdlR~Al~eLEKLia~-~~~~~IT~e~V~allg~~~~~~I~~lidA 257 (824)
T PRK07764 182 EVMRGYLERICAQEG-VPVEPGVLPLVIRAG--GGSVRDSLSVLDQLLAG-AGPEGVTYERAVALLGVTDSALIDEAVDA 257 (824)
T ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhh-cCCCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 4444444443 3445 666777666555544 37788888888876632 11222333 234455
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC
Q 025226 187 FLKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
.. .++...++.+++++.+.|..|.
T Consensus 258 L~-~~D~a~al~~l~~Li~~G~dp~ 281 (824)
T PRK07764 258 LA-AGDGAALFGTVDRVIEAGHDPR 281 (824)
T ss_pred HH-cCCHHHHHHHHHHHHHcCCCHH
Confidence 44 5778888888888888877654
No 353
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=48.04 E-value=9.2 Score=22.83 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
-.++...+|++|..+...|....||-.+.-|..
T Consensus 7 y~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~~ 39 (55)
T PF07443_consen 7 YHEELIAVFKQMPSRNYDPKTRKWNFSLEDYST 39 (55)
T ss_pred CCHHHHHHHHcCcccccCccceeeeeeHHHHHH
Confidence 345677788888887777887777776666643
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.84 E-value=1.4e+02 Score=26.46 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.|+.-|...|+..+|.+...++.-- +-.-.+++.+++...-+.|+-.....++++.-.. ..+|-|.|=.+|.+.
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmP--fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s----glIT~nQMtkGf~RV 587 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMP--FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS----GLITTNQMTKGFERV 587 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCC--cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CceeHHHhhhhhhhh
Confidence 4899999999999999888875422 3456788999999999999988888888877764 557778888888764
No 355
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.47 E-value=2.2e+02 Score=25.80 Aligned_cols=54 Identities=15% Similarity=0.193 Sum_probs=45.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhhcCCCc
Q 025226 190 DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPEK 243 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~p~~ 243 (256)
.-+.+.|....-+|.-.|+..++.|....|-.++++-+..+++..+..++.|+.
T Consensus 311 ~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~p~~ 364 (519)
T KOG0159|consen 311 ELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVLPSG 364 (519)
T ss_pred cCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhCCCc
Confidence 356778899999999999999999999999999999988888887777777663
No 356
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=47.46 E-value=32 Score=18.00 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q 025226 158 MNEAMQVWESMRK 170 (256)
Q Consensus 158 ~~~a~~~~~~m~~ 170 (256)
+|.|..+|+....
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444445544443
No 357
>PF07875 Coat_F: Coat F domain; InterPro: IPR012851 The Coat F proteins contribute to the Bacillales spore coat. They occur multiple times in the genomes in which they are found. Bacillus subtilis endospore protein coats protect them and may play a role in their germination []. Spore coat protein F, on the outer surface of the endospore, is one of a suite of proteins that could be used to differentiate between members of the Bacillus genus [].
Probab=47.26 E-value=25 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.882 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 025226 122 TILAVKIFDIIRKQDWYQP 140 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p 140 (256)
.+...++|+.|.+.||+.|
T Consensus 44 ~~~~~~l~~~m~~kGwY~~ 62 (64)
T PF07875_consen 44 QQMQYELFNYMNQKGWYQP 62 (64)
T ss_pred HHHHHHHHHHHHHcCCcCC
Confidence 6788999999999998766
No 358
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.03 E-value=74 Score=26.65 Aligned_cols=58 Identities=12% Similarity=0.365 Sum_probs=47.4
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 162 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
.++++.|.+.++.|.-+.|--+--.+.+.=.+.++..+++.+.....+ |..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-----fd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-----FDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhh-----hHHHHHHHHH
Confidence 578888888899999999888888888888889999999998765322 7778887775
No 359
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=46.89 E-value=1.2e+02 Score=27.21 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=45.0
Q ss_pred HHHhhccCCCcHH------HHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 98 KTHVLRLLKMDIV------AVLIELERQEETILAVKIFDIIRKQDW--YQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 98 ~~~~~~~~~~~~~------~li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
+...++++-|++. +++.+.......++-.++|........ +.-|...+-..++-|...|.+.+-.-+-.-|+
T Consensus 194 rtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~~~~~~~~~if~dd~~n~~~~ikr~~~~G~~~Di~~l~~~~~ 273 (543)
T KOG2214|consen 194 RTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLTNFLHSLFNIFQDDLGNLLTIIKRYFTQGALFDISHLACVMK 273 (543)
T ss_pred HHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhccchHhhhhhhcCcchhHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 4445666777765 477777777777777777765443331 23444456667777777777766655555554
Q ss_pred h
Q 025226 170 K 170 (256)
Q Consensus 170 ~ 170 (256)
+
T Consensus 274 ~ 274 (543)
T KOG2214|consen 274 K 274 (543)
T ss_pred H
Confidence 3
No 360
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=46.68 E-value=51 Score=25.57 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=31.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC--------------CCHhhHHHHHHHHHHcCChhHHHHHHH
Q 025226 147 DLIIALARTGKMNEAMQVWESMRKEDLF--------------PDSQTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~g~~--------------p~~~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
+++-.|-+.-++.+..++++.|.+..+. +--..-|.-..-|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 4455556666666666666666543222 222344555566666666666666665
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.64 E-value=1.8e+02 Score=24.99 Aligned_cols=11 Identities=0% Similarity=-0.070 Sum_probs=4.6
Q ss_pred HHHHHHHcCCH
Q 025226 112 VLIELERQEET 122 (256)
Q Consensus 112 li~~~~~~~~~ 122 (256)
.|...+..|+.
T Consensus 38 pL~~A~~~~~~ 48 (413)
T PHA02875 38 PIKLAMKFRDS 48 (413)
T ss_pred HHHHHHHcCCH
Confidence 34444444444
No 362
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=46.20 E-value=27 Score=24.31 Aligned_cols=45 Identities=24% Similarity=0.273 Sum_probs=23.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
++++.+...+..-.|.++++.+.+.+ ...+..|-=--|+.+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKG-PRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTT-TT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhcc-CCcCHHHHHHHHHHHHHCC
Confidence 46666666666666677777777665 4555443333334444433
No 363
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.96 E-value=2.5e+02 Score=26.08 Aligned_cols=99 Identities=8% Similarity=0.001 Sum_probs=54.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 192 (256)
.....+.|+++.|.++..+.. +..-|..|=++....|++..|.+.|..-.. |..|+-.+...|+
T Consensus 644 Felal~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 644 FELALKLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGN 707 (794)
T ss_pred hhhhhhcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCC
Confidence 334455666666666555433 455677777777777888888777776543 3445555555555
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 193 ~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.+....+-..-++.|. .|.-.-+|...|++++.++
T Consensus 708 ~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 708 AEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 5444333333333332 2233334444555555554
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=45.71 E-value=1.1e+02 Score=21.97 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 159 NEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
-+..+-++.+..-.+.|+...-..-+++|-+.+++.-|.++|+-.+.. +.+-...|-.+++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 355666777777788999999999999999999999999999988755 2223334655554
No 365
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.43 E-value=1.3e+02 Score=29.96 Aligned_cols=78 Identities=14% Similarity=0.113 Sum_probs=39.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYI--YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
-+.+|..+|+|++|..+..++. ..-|-.. --.|+..+...++.-+|-++..+-.+. +.-.+.-||+
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~----~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~k 1038 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLS----EGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCK 1038 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhh
Confidence 3444445555555555555544 1222222 245666666666666666666665542 2233444555
Q ss_pred cCChhHHHHHHH
Q 025226 190 DGSPADAMNIYE 201 (256)
Q Consensus 190 ~g~~~~a~~~~~ 201 (256)
...+++|..+-.
T Consensus 1039 a~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 1039 AKEWEEALRVAS 1050 (1265)
T ss_pred HhHHHHHHHHHH
Confidence 555555555443
No 366
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.41 E-value=53 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.217 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDII 132 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m 132 (256)
.+|..|...++.++|.+-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3455555555555555555554
No 367
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=45.38 E-value=37 Score=21.45 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
|+.+.+.+++++..+.|..|.....+.++.+.
T Consensus 15 ~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 15 GDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp T-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44455555555555444444444444444443
No 368
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=45.03 E-value=97 Score=21.04 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=29.9
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcC--CHHHHHHHHHHHHhcC
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQE--ETILAVKIFDIIRKQD 136 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~--~~~~a~~~~~~m~~~~ 136 (256)
..++..|...++.++|...+ +++......+... .+|..+...+ .-+.+-.++..+.+.+
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l-~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~ 67 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECL-KELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRK 67 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHH-HHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCHHHHHHHH-HHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcC
Confidence 34567777778888887544 3332222223333 2444444432 2345556666666665
No 369
>PRK09857 putative transposase; Provisional
Probab=44.78 E-value=1.8e+02 Score=24.09 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
+.+++.-....++.++-.++++...+. +.+.....-++-.-+-+.|.-+++.++-.+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 556666666777777778888777664 222333444566667777777788888888888888665
No 370
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=44.45 E-value=36 Score=21.51 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=32.5
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
-.|+.+.+.+++++..+.|..|.....+.+..+..+-|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999988999998888888888777664
No 371
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.91 E-value=40 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=21.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 182 EVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
++|+-+.++.--++|+++.+-|.+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 45667778888899999999998876
No 372
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=42.57 E-value=1.5e+02 Score=28.07 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=13.2
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHH
Q 025226 176 DSQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 176 ~~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
|....-.|-.++.+.|.-++|.+.|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHH
Confidence 4444445555555555555555544
No 373
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=42.25 E-value=1.1e+02 Score=20.66 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (256)
-+...+++....+.. ....|++.|+.++.+.|.-..|+++-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~~---G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKT---GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 677777777555442 235568888888888888777877777766655
No 374
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.99 E-value=1.8e+02 Score=25.54 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 158 MNEAMQVWESMRKEDLF----PDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~----p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
.++|.++|.++.+.++- --++|||.+-.-|... ..|+..|++.++..++..+.+
T Consensus 147 ~eka~~~~~~ll~~~~~~~~t~~Vvt~nef~tlc~~~-----------------~~~~~~t~~l~l~~l~~~k~i 204 (439)
T KOG2911|consen 147 KEKALDVYAELLHEEVLSECTGAVVTLNEFQTLCSNL-----------------GKPDEETKDLVLCWLAYQKHI 204 (439)
T ss_pred HHHHHHHHHHHHhhhhhhccCceeeeHHHHHHHhccC-----------------CCCcHHHHHHHHHHHHhhhhe
Confidence 57788888777765432 2357777777666543 467888888888888877643
No 375
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=40.89 E-value=75 Score=21.17 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHHHHHHHHHHc--CC-HHHHHHHHHHHHhcCCCCC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIVAVLIELERQ--EE-TILAVKIFDIIRKQDWYQP 140 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~--~~-~~~a~~~~~~m~~~~~~~p 140 (256)
.....|-+.+-.+..+..+...... ..+.++....|.+++|. |+ .++|.++=++..+.|++.|
T Consensus 14 ~Rye~fRRs~~~k~~ikkli~~~~~~qsv~~~v~i~v~g~aKvFVGEiVE~A~~Vq~~~~~~~pl~P 80 (90)
T PF04719_consen 14 DRYEAFRRSSFNKAAIKKLINQVLGNQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGETGPLQP 80 (90)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHS-S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SS--H
T ss_pred HHHHHHHHccCCHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 3456677777777777777776665 44544555788888874 55 5788877776665553333
No 376
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=40.83 E-value=3.2e+02 Score=25.91 Aligned_cols=85 Identities=13% Similarity=0.113 Sum_probs=54.8
Q ss_pred HHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CCHhhHHHHHHHHH
Q 025226 123 ILAVKIFDII-RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED---LF----------PDSQTYTEVIRGFL 188 (256)
Q Consensus 123 ~~a~~~~~~m-~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~ 188 (256)
++....+... .+.| +..+......++... .|++..|..++++....| +. ++......|++++.
T Consensus 181 eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 181 QQVADHLAHVLDSEK-IAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 4444444433 4455 777777776666544 588888888888766532 11 23333455666655
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
+ ++...++.++++|.+.|+.+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 4 889999999999998887554
No 377
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.42 E-value=2.8e+02 Score=24.99 Aligned_cols=74 Identities=5% Similarity=0.037 Sum_probs=39.5
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 197 (256)
..|++..|+.++++....+ ....|+..+...+ |+ ++...+..++.+....+....|+
T Consensus 212 S~Gd~RdAL~lLeq~i~~~---~~~it~~~V~~~l-------------------g~-~~~~~~~~l~~si~~~d~~~~al 268 (484)
T PRK14956 212 GDGSVRDMLSFMEQAIVFT---DSKLTGVKIRKMI-------------------GY-HGIEFLTSFIKSLIDPDNHSKSL 268 (484)
T ss_pred cCChHHHHHHHHHHHHHhC---CCCcCHHHHHHHh-------------------CC-CCHHHHHHHHHHHHcCCcHHHHH
Confidence 3477888888887755332 1112333322211 22 24444555555554444455677
Q ss_pred HHHHHHHhCCCCCChhH
Q 025226 198 NIYEDMIKSPDPPEELP 214 (256)
Q Consensus 198 ~~~~~M~~~g~~p~~~t 214 (256)
.++++|.+.|..|....
T Consensus 269 ~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 269 EILESLYQEGQDIYKFL 285 (484)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 77777777777665443
No 378
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=40.32 E-value=60 Score=21.27 Aligned_cols=42 Identities=17% Similarity=0.109 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 165 (256)
..+.+.+++...+++. . ...|...|+.++.+.|.-+-|+++|
T Consensus 45 ~~eq~~~mL~~W~~r~--g-~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 45 IKMQAKQLLVAWQDRE--G-SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHHhc--C-ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 3577777777777664 1 3457888888888888888777765
No 379
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.10 E-value=1.9e+02 Score=22.93 Aligned_cols=126 Identities=17% Similarity=0.184 Sum_probs=76.2
Q ss_pred chhHHHHHHHhhcCC--CcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 73 GKEALFVILGLKRFK--DDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
+..+...+.|+.-.. +.++|+ +......+.|+.. -++.++...|+.+.|..++....-. ..+...-+.++
T Consensus 76 p~~~~~~~~g~W~LD~~~~~~A~----~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~ 148 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDHGDFEEAL----ELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYF 148 (226)
T ss_pred CHHHHHHHHHHHHhChHhHHHHH----HHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHH
Confidence 456666777777654 444454 3344444555544 5899999899999999999886522 22333334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~ 212 (256)
.. ..++.+-+|..+-....+. -....+..++..+..... + ...++++...-+.+..
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~~--~-~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEECA--R-SGRLDELLSLPLDEEE 204 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHhh--h-hhHHHHHHhCCCChHH
Confidence 45 6668899998877766552 114577777777775443 1 2224455554444433
No 380
>PLN03025 replication factor C subunit; Provisional
Probab=39.89 E-value=2.2e+02 Score=23.71 Aligned_cols=90 Identities=11% Similarity=0.132 Sum_probs=58.6
Q ss_pred HHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C-C----------CCCHhhHHHHHHHHHH
Q 025226 123 ILAVKIFDI-IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-D-L----------FPDSQTYTEVIRGFLK 189 (256)
Q Consensus 123 ~~a~~~~~~-m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-g-~----------~p~~~t~~~li~~~~~ 189 (256)
++....+.. ..+.| +..+......++... .|++..+...++..... + + .|....-..++.+. .
T Consensus 161 ~~l~~~L~~i~~~eg-i~i~~~~l~~i~~~~--~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~ 236 (319)
T PLN03025 161 QEILGRLMKVVEAEK-VPYVPEGLEAIIFTA--DGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-L 236 (319)
T ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-H
Confidence 444444444 34556 777888887777653 48899998888754321 1 1 12223334555554 4
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhHHH
Q 025226 190 DGSPADAMNIYEDMIKSPDPPEELPFR 216 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~g~~p~~~t~~ 216 (256)
.+++++|...+.+|...|..|......
T Consensus 237 ~~~~~~a~~~l~~ll~~g~~~~~Il~~ 263 (319)
T PLN03025 237 KGKFDDACDGLKQLYDLGYSPTDIITT 263 (319)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 688999999999999999988754443
No 381
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=38.67 E-value=1.1e+02 Score=20.03 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=39.6
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHc--CC-HHHHHHHHHHHHh--cCCCCCC
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ--EE-TILAVKIFDIIRK--QDWYQPD 141 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~--~~-~~~a~~~~~~m~~--~~~~~p~ 141 (256)
..|-+..-....+..+........+.+++..+|.++++. |+ .++|..+-++..+ .|++.|.
T Consensus 10 e~~Rra~f~k~~iKr~~~~~~~~~v~~~v~i~v~glaKvFVGeivE~A~~V~~~~~~~~~~Pl~P~ 75 (85)
T cd08048 10 EMFRRSSFPKAAIKRLIQSVTGQSVSQNVVIAVAGIAKVFVGEIVEEARDVQEEWGEANTGPLQPR 75 (85)
T ss_pred HHHHHhhccHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcH
Confidence 344555555566667766665555555666788888773 55 5888888887776 4545554
No 382
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=38.28 E-value=2.4e+02 Score=23.76 Aligned_cols=58 Identities=12% Similarity=0.391 Sum_probs=49.8
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
.++|..|++.+ +.|.-+.|.-+.-.+...=.+.+...+|+.+.. |..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~-i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKE-IHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcC-CCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 56788888888 999999999998888998899999999999987 55558888888885
No 383
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=38.02 E-value=3.1e+02 Score=24.90 Aligned_cols=76 Identities=14% Similarity=0.115 Sum_probs=51.7
Q ss_pred hhccCCCcHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH--------------HhcCCHHHHHHHH
Q 025226 101 VLRLLKMDIVAV-LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL--------------ARTGKMNEAMQVW 165 (256)
Q Consensus 101 ~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~--------------~~~g~~~~a~~~~ 165 (256)
.+.++..+-.+| +-+....|.+.+++.++++....| . +.+++..+-... ...++..++...+
T Consensus 192 ~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~--~-~~It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~ 268 (515)
T COG2812 192 DKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFG--E-GEITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLI 268 (515)
T ss_pred HhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHcc--C-CcccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHH
Confidence 445665555542 344455688999999999998776 2 444444433332 3458899999999
Q ss_pred HHHHhCCCCCCHhh
Q 025226 166 ESMRKEDLFPDSQT 179 (256)
Q Consensus 166 ~~m~~~g~~p~~~t 179 (256)
+++.+.|..|....
T Consensus 269 ~~l~~~G~~~~~~l 282 (515)
T COG2812 269 NELIEEGKDPEAFL 282 (515)
T ss_pred HHHHHhCcCHHHHH
Confidence 99999998776544
No 384
>PF09435 DUF2015: Fungal protein of unknown function (DUF2015); InterPro: IPR018559 This entry represents uncharacterised proteins found in fungi.
Probab=37.79 E-value=1.3e+02 Score=21.46 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=29.1
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHH--HHHhcCCCCCC
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFD--IIRKQDWYQPD 141 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~--~m~~~~~~~p~ 141 (256)
+=.++|-.+.+..++.+.|+++++. +++|..+|. .+.+.| +.||
T Consensus 76 ~D~R~GLD~~ak~EI~~IM~~~~v~---------------FDeARliy~~~~f~~Ng-I~pd 121 (128)
T PF09435_consen 76 GDSRAGLDDAAKREIRRIMKRRRVN---------------FDEARLIYTERRFKKNG-IGPD 121 (128)
T ss_pred CCcccCcCHHHHHHHHHHHHHcCCC---------------HHHHHHHHHHHHHHHcC-CCCC
Confidence 3356676777777777778777763 667777765 355666 6665
No 385
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=37.71 E-value=96 Score=18.90 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=23.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-----HcCChhHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL-----KDGSPADAMNI 199 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~-----~~g~~~~a~~~ 199 (256)
-+.|++-+|.+++++.=...-.|....|..||...+ +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345666666666666543322234455555555432 34555555444
No 386
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=37.25 E-value=2e+02 Score=22.44 Aligned_cols=151 Identities=13% Similarity=0.064 Sum_probs=99.6
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
..|+++|-.+--.|.+.--+.. ...+-+..-...++..+..+.=|.+...+=..+-.. .-|++..---|-.+..
T Consensus 27 ~YWlfIif~Fp~iG~VaYfvav---~LPEl~~~R~a~~~~~a~~q~ldP~R~~Rea~~~~~---~ApTvqnr~rLa~al~ 100 (251)
T COG4700 27 RYWLFIIFCFPVIGCVAYFVAV---MLPELGADRHAHTLLMALQQKLDPERHLREATEELA---IAPTVQNRYRLANALA 100 (251)
T ss_pred HHHHHHHHHhcccchhhHHHHH---hhhHhcccchhHHHHHHHHHhcChhHHHHHHHHHHh---hchhHHHHHHHHHHHH
Confidence 3566666666555554332211 122223223333566666666565554433322221 4678888888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC---CCCChhHHHHHHHHhcCCCChHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP---DPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g---~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
..|+..+|+..|++-...-+.-|....-.+-++....+++..|...++.+.+-+ -.|| +.-.+-+.|...|...+
T Consensus 101 elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~ 178 (251)
T COG4700 101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYAD 178 (251)
T ss_pred HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchh
Confidence 999999999999998765566677888888888888999999999999887753 3344 44456677887887665
Q ss_pred HH
Q 025226 231 KV 232 (256)
Q Consensus 231 a~ 232 (256)
|-
T Consensus 179 Ae 180 (251)
T COG4700 179 AE 180 (251)
T ss_pred HH
Confidence 43
No 387
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=37.21 E-value=2.2e+02 Score=27.06 Aligned_cols=62 Identities=6% Similarity=0.087 Sum_probs=39.5
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHh--------CCCCCChhHHHHHHHHhcCCCChHHHHHhhhh
Q 025226 176 DSQTYTEVIRGFLKDGSPADAMNIYEDMIK--------SPDPPEELPFRILLKGLLPHPLLRSKVKKDFE 237 (256)
Q Consensus 176 ~~~t~~~li~~~~~~g~~~~a~~~~~~M~~--------~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 237 (256)
+...|-.-...|.++|+.+.-.+.+-++.. .-+.-++.....|-+.+.+-|+.++|++...+
T Consensus 808 ~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 445566777777777777665444433322 23445666667788888888888888884443
No 388
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=37.18 E-value=1.6e+02 Score=25.64 Aligned_cols=132 Identities=18% Similarity=0.152 Sum_probs=74.3
Q ss_pred HHHHHhhccCCCcHH------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH--H--HHHhcCCHHHHHHHH
Q 025226 96 FIKTHVLRLLKMDIV------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI--I--ALARTGKMNEAMQVW 165 (256)
Q Consensus 96 ~~~~~~~~~~~~~~~------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li--~--~~~~~g~~~~a~~~~ 165 (256)
+++.+.+.|+.|+.. +++.++.-.+..++..+++..-. .+...+...- . .+...+..+.-...+
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG------IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc------hhhhhhhhhccccccccccccccchHHHHH
Confidence 456677889999876 58888888777777777766411 1111111100 0 011111122223334
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH----------------hCCCCCChhHHHHHHHHhcCCCChH
Q 025226 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI----------------KSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~----------------~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
....+.|.-.|...+-..++.+...-.+++|.+--.+-. ..--.||...|+++...|+.-|-+.
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 444455656666666666666554445666654332221 1113599999999999999888665
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
....
T Consensus 255 ~~~~ 258 (391)
T cd07229 255 RSVT 258 (391)
T ss_pred CCce
Confidence 3444
No 389
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=37.15 E-value=83 Score=26.87 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=50.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
-|.+.|.+++|.+.|..-.. +.| |.++|..=-.+|.+...+..|..=.+..... =...+.+|++.+.-+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHH
Confidence 57899999999999987544 457 8899998889999988887776655544332 124567777765444
Q ss_pred HH
Q 025226 230 SK 231 (256)
Q Consensus 230 ~a 231 (256)
++
T Consensus 176 ~~ 177 (536)
T KOG4648|consen 176 ES 177 (536)
T ss_pred HH
Confidence 33
No 390
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=36.81 E-value=54 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=23.0
Q ss_pred CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 025226 171 EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 171 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
+|..|+ +|+-+.++...++|+++.+-|.+.|-
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 455555 45556778888888888888888763
No 391
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.80 E-value=1.6e+02 Score=25.57 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=35.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART------GKMNEAMQVWES 167 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~------g~~~~a~~~~~~ 167 (256)
....+.+.+++..|.++|+++.++. ..|+...+-..+..+|+. -++++|.+.++.
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~-l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRL-LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4445667778888888888888775 555555544444444432 567777777765
No 392
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=36.27 E-value=48 Score=27.64 Aligned_cols=74 Identities=15% Similarity=0.266 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHH
Q 025226 127 KIFDIIRKQDWYQPDAYIY-----KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 127 ~~~~~m~~~~~~~p~~~~y-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
+.++.+.+.| ||+..+ ..+.....+...+++..++++..++. .|+..+-+.+|-|+ ....++..+.++
T Consensus 157 e~l~~l~~aG---~dv~~hnlEt~~~l~~~vrr~~t~e~~Le~l~~ak~~--~pgi~~~TgiIVGl--GETeee~~etl~ 229 (302)
T TIGR00510 157 AALDILLDAP---PDVYNHNLETVERLTPFVRPGATYRWSLKLLERAKEY--LPNLPTKSGIMVGL--GETNEEIKQTLK 229 (302)
T ss_pred HHHHHHHHcC---chhhcccccchHHHHHHhCCCCCHHHHHHHHHHHHHh--CCCCeecceEEEEC--CCCHHHHHHHHH
Confidence 3556666555 343333 34555555666788888888888774 36777888888888 344567777777
Q ss_pred HHHhCC
Q 025226 202 DMIKSP 207 (256)
Q Consensus 202 ~M~~~g 207 (256)
.+++.|
T Consensus 230 ~Lrelg 235 (302)
T TIGR00510 230 DLRDHG 235 (302)
T ss_pred HHHhcC
Confidence 777765
No 393
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=35.90 E-value=89 Score=22.79 Aligned_cols=43 Identities=12% Similarity=0.064 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 178 ~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
-|...++.++ +.|-..+...++++|.+.|+..+..+|+-+++-
T Consensus 111 GtlGvL~~ak-~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~ 153 (157)
T COG2405 111 GTLGVLALAK-SKGLISKDKPILDELIEKGFRISRSILEEILRK 153 (157)
T ss_pred ehhHHHHHHH-HcCcccchHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 4444444443 346667777777777777777777777766653
No 394
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=35.76 E-value=1.4e+02 Score=23.20 Aligned_cols=57 Identities=11% Similarity=0.143 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQD-------------WYQPDAYIYKDLIIALARTGKMNEAMQVWES 167 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 167 (256)
+++-.|-+.-++.++.++++.|.+.. ...+--..-|.....|.++|.+|-|..++.+
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 58888999999999999999987653 1234445668888999999999999999884
No 395
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.70 E-value=3.4e+02 Score=24.61 Aligned_cols=79 Identities=5% Similarity=0.117 Sum_probs=52.3
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CCHhhHHHHHHHHHHcCChhHHH
Q 025226 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED---LF----------PDSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 131 ~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~~~g~~~~a~ 197 (256)
.+.+.| +..+......++... .|++..|..++++....| +. ++....-.|+.+.. .|+.+.+.
T Consensus 190 il~~eg-i~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~~l 265 (509)
T PRK14958 190 LLKEEN-VEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDRLL 265 (509)
T ss_pred HHHHcC-CCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHHHH
Confidence 345556 777776666555443 588999998888766543 11 22333445555544 48899999
Q ss_pred HHHHHHHhCCCCCChh
Q 025226 198 NIYEDMIKSPDPPEEL 213 (256)
Q Consensus 198 ~~~~~M~~~g~~p~~~ 213 (256)
.++++|.+.|..|...
T Consensus 266 ~~~~~l~~~g~~~~~i 281 (509)
T PRK14958 266 GCVTRLVEQGVDFSNA 281 (509)
T ss_pred HHHHHHHHcCCCHHHH
Confidence 9999999998877533
No 396
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.44 E-value=25 Score=30.74 Aligned_cols=67 Identities=18% Similarity=0.273 Sum_probs=44.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH----HHHHHHHHHcCC-h
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY----TEVIRGFLKDGS-P 193 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~----~~li~~~~~~g~-~ 193 (256)
...+++|+++.++-.+.| .|-.+ |-.--|.++++++.++|+.||.+|- +-.+.+|+=.|- +
T Consensus 216 a~~ldeAl~~a~~~~~ag--~p~SI------------gl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ 281 (561)
T COG2987 216 AETLDEALALAEEATAAG--EPISI------------GLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTV 281 (561)
T ss_pred cCCHHHHHHHHHHHHhcC--CceEE------------EEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCH
Confidence 467888888888888877 44322 3345677888888888888887663 345666766653 3
Q ss_pred hHHHHH
Q 025226 194 ADAMNI 199 (256)
Q Consensus 194 ~~a~~~ 199 (256)
+++.++
T Consensus 282 ee~~~l 287 (561)
T COG2987 282 EEADEL 287 (561)
T ss_pred HHHHHH
Confidence 444433
No 397
>PRK12928 lipoyl synthase; Provisional
Probab=35.43 E-value=55 Score=27.06 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
..+.....+...+++..++++.+++.| |+..+-+.+|-|+ ....++..+.++.+.+.+
T Consensus 175 ~~vl~~m~r~~t~e~~le~l~~ak~~g--p~i~~~s~iIvG~--GET~ed~~etl~~Lrel~ 232 (290)
T PRK12928 175 PRLQKAVRRGADYQRSLDLLARAKELA--PDIPTKSGLMLGL--GETEDEVIETLRDLRAVG 232 (290)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHhC--CCceecccEEEeC--CCCHHHHHHHHHHHHhcC
Confidence 555555566667788888888777754 6677777777776 344566777777777665
No 398
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=35.24 E-value=94 Score=22.75 Aligned_cols=38 Identities=5% Similarity=-0.013 Sum_probs=21.5
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
+|..+.+.+.+..+.++.+.+.+.|+..+..|.+-.|+
T Consensus 6 ~i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 6 RIKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 34444455555566666666666666666655555444
No 399
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.98 E-value=3.8e+02 Score=25.02 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=51.7
Q ss_pred HHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----------CCHhhHHHHHHHHH
Q 025226 123 ILAVKIFDI-IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED---LF----------PDSQTYTEVIRGFL 188 (256)
Q Consensus 123 ~~a~~~~~~-m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~----------p~~~t~~~li~~~~ 188 (256)
++..+.+.. +.+.| +..+......++. .-.|++..+..++++....| +. ++......++.++.
T Consensus 186 eei~~~L~~i~~~eg-i~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 186 ETVLEHLTQVLAAEN-VPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333344433 34556 6777766666665 33478888888877655432 11 23333445555554
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
.|+...+++++++|.+.|..|.
T Consensus 263 -~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 263 -QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred -cCCHHHHHHHHHHHHHcCCCHH
Confidence 4788888888888888877654
No 400
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=34.70 E-value=2.9e+02 Score=23.55 Aligned_cols=66 Identities=9% Similarity=0.046 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHhhHHHHHHHHH-HcCChhHHHHHHHHHHhCCCC
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRK----EDLFPDSQTYTEVIRGFL-KDGSPADAMNIYEDMIKSPDP 209 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~t~~~li~~~~-~~g~~~~a~~~~~~M~~~g~~ 209 (256)
.+-..-.-||+-|+-+.|++.+.+-.+ .|.+.|++-+.+=+.-+- ...-+.+-.+.-+.|.+.|..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgD 176 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGD 176 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC
Confidence 344445566777777777766665443 256666665554444433 223345566666666667653
No 401
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.39 E-value=3.4e+02 Score=25.25 Aligned_cols=102 Identities=9% Similarity=0.025 Sum_probs=65.6
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
-..+.|+.+.|.+... +..-..-+..|=++..+.+++..|.+.|..-.. |..|+-.+...|+.+..
T Consensus 646 lal~lgrl~iA~~la~----e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAV----EANSEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhhhcCcHHHHHHHHH----hhcchHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 3357788877764222 222222334677788888888888877766542 55677777777877766
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 162 MQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 162 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
..+=...++.|.. |.-.-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 6666666665542 44455666778888888877654
No 402
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.34 E-value=85 Score=21.47 Aligned_cols=45 Identities=18% Similarity=0.190 Sum_probs=20.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
++..+...+..-.|.++++++.+.+ ..++..|---.|+.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~-~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKG-PSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcC-CCCCHHHHHHHHHHHHhCCC
Confidence 4444444444444555555555554 34444443333444444443
No 403
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=34.32 E-value=1.3e+02 Score=19.43 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
.+.+.+++....++. ....|...|+.++-+.|+-|-+..+
T Consensus 44 ~eq~~~mL~~W~~r~---g~~at~~~L~~AL~~i~r~Di~~~~ 83 (84)
T cd08317 44 AQQAQAMLKLWLERE---GKKATGNSLEKALKKIGRDDIVEKC 83 (84)
T ss_pred HHHHHHHHHHHHHhc---CCcchHHHHHHHHHHcChHHHHHHh
Confidence 578888888766654 2357788888888888887776653
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.16 E-value=3.2e+02 Score=23.84 Aligned_cols=72 Identities=14% Similarity=-0.004 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh-----hHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP-----ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-----~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
.+.+.|...+..|.+.|..|..+.=..++.++-.-|.. .-|...++.....|..--.......+--++..-+
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pk 320 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPK 320 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCC
Confidence 44555555555555555544444333333333333321 1222333333334444444444444444444444
No 405
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=34.12 E-value=2e+02 Score=21.61 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=40.6
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 025226 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210 (256)
Q Consensus 131 ~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p 210 (256)
.+.+.+ +.|+...|..+|+.+.+.|++.. +.++.+.++-||.......+-.+.. ....+.++=-+|..+
T Consensus 19 Sl~~~~-i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 19 SLNQHN-IPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHcC-CCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH----
Confidence 334444 55666666666666666655433 3333344444554444433333222 112222222222222
Q ss_pred ChhHHHHHHHHhcCCCChHHHHH
Q 025226 211 EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 211 ~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
=...+..+++.+...|++-+|++
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr 110 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALR 110 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHH
Confidence 00124455555555666555555
No 406
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=33.83 E-value=1.2e+02 Score=20.50 Aligned_cols=62 Identities=10% Similarity=0.117 Sum_probs=45.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChh---HHHHHHHHHHhCCC-CCChh
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA---DAMNIYEDMIKSPD-PPEEL 213 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~---~a~~~~~~M~~~g~-~p~~~ 213 (256)
+....+.+...+.....+...+-|...|-+.+|+.+.+...+. +|+.+=..+.+.|. .|-..
T Consensus 6 v~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eGyL~P~gd 71 (99)
T cd04445 6 YLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEGYLQPAGD 71 (99)
T ss_pred HHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcCCeeecCc
Confidence 3444556666666777777777889999999999999887664 78888888888774 45433
No 407
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=33.44 E-value=1.6e+02 Score=20.04 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIR 133 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~ 133 (256)
.+|..|...+++++|.+-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34555555566666666555554
No 408
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.95 E-value=1.5e+02 Score=19.57 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=14.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 025226 150 IALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (256)
......|+.++|.+.+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 344556888888887777665
No 409
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=32.86 E-value=2.3e+02 Score=24.43 Aligned_cols=57 Identities=21% Similarity=0.180 Sum_probs=38.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAY--IYKDLIIALA--RTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--~y~~li~~~~--~~g~~~~a~~~~~~m~~~ 171 (256)
...+.+.+++..|.++|+++.++ +.++.. .|..+..+|. ..-++++|.+.|+.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788899999999988876 334443 4444445554 346788888888887763
No 410
>PF14162 YozD: YozD-like protein
Probab=32.52 E-value=1.1e+02 Score=17.93 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=10.7
Q ss_pred HHHHHHHHHhCCCCCCh
Q 025226 196 AMNIYEDMIKSPDPPEE 212 (256)
Q Consensus 196 a~~~~~~M~~~g~~p~~ 212 (256)
|.-+|.++.++|..|+.
T Consensus 14 AefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 14 AEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHccCCCcH
Confidence 55566666666666654
No 411
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.36 E-value=4e+02 Score=24.40 Aligned_cols=121 Identities=11% Similarity=0.045 Sum_probs=78.2
Q ss_pred hhcCCCcHHHHHHHHHHHhh-------ccCCCcHHHHHHHHHHc----C-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 025226 83 LKRFKDDEEKLQKFIKTHVL-------RLLKMDIVAVLIELERQ----E-ETILAVKIFDIIRKQDWYQPDAYIYKDLII 150 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~~----~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 150 (256)
+...++.+.|+. +++...+ .|..+...-+=.+|.+. . +.+.|..+|..--+.| .|+...+-..+.
T Consensus 259 ~g~~~d~e~a~~-~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIE-YLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHH-HHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 667788888874 4455544 55444333344444442 3 7788999999999898 567665555555
Q ss_pred HHHh-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--HcCChhHHHHHHHHHHhCC
Q 025226 151 ALAR-TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL--KDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 151 ~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~~a~~~~~~M~~~g 207 (256)
.... ..+...|.++|...-+.|. ++..-+-+++.... -..+...|..++.+-.+.|
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 4444 3678899999999887765 33343434333333 2346788888888888887
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.70 E-value=1.9e+02 Score=20.46 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHH
Q 025226 160 EAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYED 202 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~ 202 (256)
.+.++|+.|..+|+--. ..-|..--.-+.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 88899999998876554 35566666667788999999998864
No 413
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=31.21 E-value=1.7e+02 Score=23.67 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=31.7
Q ss_pred HHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 025226 94 QKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRK 134 (256)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 134 (256)
+.|+.-...+|+.++....|.+|....+..+=+..++.+++
T Consensus 219 d~fh~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK~ 259 (263)
T KOG2536|consen 219 DSFHRFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVKS 259 (263)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34555567789999988999999998888877777776664
No 414
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=30.99 E-value=37 Score=30.19 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=43.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH----HHHHHHHHHcC-Ch
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY----TEVIRGFLKDG-SP 193 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~----~~li~~~~~~g-~~ 193 (256)
..++++|+...++-++.+ +|-.+ |-+--|.++|+++.+.|+.||..|- +-.+.+|+=.| .+
T Consensus 207 ~~~ldeal~~~~~a~~~~--~~~SI------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ 272 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEG--KPISI------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTV 272 (545)
T ss_pred cCCHHHHHHHHHHHHHcC--CceEE------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCH
Confidence 357888888888888776 33322 3345577888888888888887663 23455566666 35
Q ss_pred hHHHHHH
Q 025226 194 ADAMNIY 200 (256)
Q Consensus 194 ~~a~~~~ 200 (256)
+++.++.
T Consensus 273 ee~~~lr 279 (545)
T TIGR01228 273 EDADKLR 279 (545)
T ss_pred HHHHHHH
Confidence 5555443
No 415
>PRK11906 transcriptional regulator; Provisional
Probab=30.92 E-value=3.9e+02 Score=23.85 Aligned_cols=83 Identities=12% Similarity=0.180 Sum_probs=56.7
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCC
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD---SQTYTEVIRGFLKDGS 192 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~ 192 (256)
....++++.|...|++-...++-.++...|..++ ..-+|+.++|.+.+++-.+. .|. .....-.|+.|+.++
T Consensus 348 ~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~--~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~~- 422 (458)
T PRK11906 348 TGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV--HFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPNP- 422 (458)
T ss_pred HHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH--HHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCCc-
Confidence 3567779999999999987763333444444444 45578999999999996653 243 344455566777655
Q ss_pred hhHHHHHHHHH
Q 025226 193 PADAMNIYEDM 203 (256)
Q Consensus 193 ~~~a~~~~~~M 203 (256)
+++|..++-+-
T Consensus 423 ~~~~~~~~~~~ 433 (458)
T PRK11906 423 LKNNIKLYYKE 433 (458)
T ss_pred hhhhHHHHhhc
Confidence 77888877643
No 416
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=30.20 E-value=1.8e+02 Score=19.74 Aligned_cols=62 Identities=8% Similarity=0.059 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--ChhHHHHHHHHHHhCCC
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG--SPADAMNIYEDMIKSPD 208 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~a~~~~~~M~~~g~ 208 (256)
...+|..|...+++++|.+-+.++......+ ..-..+|..+...+ .-+....++..+.+.|.
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~~~~--~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~ 68 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPEQHH--EVVKVLLTCALEEKRTYREMYSVLLSRLCQANV 68 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCcchH--HHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCC
Confidence 4567888899999999999999987532222 22234444444443 23345566666665543
No 417
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=30.18 E-value=1.5e+02 Score=18.95 Aligned_cols=50 Identities=10% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
-|......+..+.+.+++....... +...|...|+.++.+.|..+-|..+
T Consensus 36 ~i~~~~~~~~~~~~~~lL~~W~~~~---g~~at~~~L~~aL~~~~~~d~a~~i 85 (88)
T smart00005 36 QIRTEAPRDLAEQSVQLLRLWEQRE---GKNATLGTLLEALRKMGRDDAVELL 85 (88)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHcChHHHHHHH
Confidence 3443333345678888888777664 2346888888888888888777654
No 418
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=30.13 E-value=1.7e+02 Score=22.13 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCC---CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCCh
Q 025226 121 ETILAVKIFDIIRKQDW---YQPDA---YIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~---~~p~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
+-++|..+|..+.+... +.++. ..+-..+..+.+.- --++++.+.+ .|+.|...++.-++..+++.=.+
T Consensus 108 ~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~ 183 (199)
T smart00164 108 DEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEY----DPDLYKHLKDKLGIDPSLYALRWFLTLFARELPL 183 (199)
T ss_pred CHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHH----CHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCH
Confidence 56778888887765531 12221 11111122222211 2467777775 78989999999999999888888
Q ss_pred hHHHHHHHHHHhCC
Q 025226 194 ADAMNIYEDMIKSP 207 (256)
Q Consensus 194 ~~a~~~~~~M~~~g 207 (256)
+.+..+++.+...|
T Consensus 184 ~~~~riwD~~l~eG 197 (199)
T smart00164 184 EIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999887776
No 419
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.93 E-value=1.7e+02 Score=19.41 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=23.9
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
+.|+.+.|.++++.+. +| |+ .|..++.++-..|.-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg---~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QK---EG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC---Cc--HHHHHHHHHHHcCchhhhh
Confidence 4466777777777666 44 33 5666666666666555544
No 420
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=29.89 E-value=5.2e+02 Score=25.03 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---C----------CCCHhhHHHHHHHH
Q 025226 122 TILAVKIFDIIR-KQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED---L----------FPDSQTYTEVIRGF 187 (256)
Q Consensus 122 ~~~a~~~~~~m~-~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~t~~~li~~~ 187 (256)
.++..+.+.+.. +.| +..+......+.. ...|++.+|..++++....+ + .+|...+..++..+
T Consensus 180 ~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL 256 (830)
T PRK07003 180 AGHIVSHLERILGEER-IAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL 256 (830)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 355555555543 344 5555555444433 33577888888877654321 1 13333455555554
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCC
Q 025226 188 LKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 188 ~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
. .|+..++++++++|...|+.+.
T Consensus 257 ~-~~d~~~~l~~~~~l~~~g~~~~ 279 (830)
T PRK07003 257 A-AGDGPEILAVADEMALRSLSFS 279 (830)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCHH
Confidence 4 4888888888888888777554
No 421
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=29.82 E-value=1.3e+02 Score=22.38 Aligned_cols=18 Identities=11% Similarity=-0.043 Sum_probs=9.6
Q ss_pred HcCCHHHHHHHHHHHHhc
Q 025226 118 RQEETILAVKIFDIIRKQ 135 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~ 135 (256)
+.++++.|.+|+-.+...
T Consensus 102 ~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 102 QARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHT-HHHHHHHHHHHHHS
T ss_pred HcCCHHHHHHHHHHHHhc
Confidence 445566666666655543
No 422
>PRK05414 urocanate hydratase; Provisional
Probab=29.54 E-value=37 Score=30.31 Aligned_cols=68 Identities=18% Similarity=0.308 Sum_probs=44.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH----HHHHHHHHcC-Ch
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYT----EVIRGFLKDG-SP 193 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~----~li~~~~~~g-~~ 193 (256)
..++++|+...++-++.+ +|-.+ |-+--|.++|+++.+.|+.||..|-. -.+.+|+=.| .+
T Consensus 216 ~~~Ldeal~~~~~a~~~~--~~~SI------------g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ 281 (556)
T PRK05414 216 ADDLDEALALAEEAKAAG--EPLSI------------GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTL 281 (556)
T ss_pred cCCHHHHHHHHHHHHHcC--CceEE------------EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCH
Confidence 357888888888888777 44322 33456778888888888888877632 3344777666 45
Q ss_pred hHHHHHH
Q 025226 194 ADAMNIY 200 (256)
Q Consensus 194 ~~a~~~~ 200 (256)
+++.++.
T Consensus 282 ee~~~lr 288 (556)
T PRK05414 282 EEAAELR 288 (556)
T ss_pred HHHHHHH
Confidence 5665543
No 423
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=29.28 E-value=2e+02 Score=19.96 Aligned_cols=110 Identities=15% Similarity=0.085 Sum_probs=56.6
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
+.|-.++.++.+++.+...|+.-|.. ..++...+.+ -..-..+-.++.+.| +. ..+....+. .....+.|
T Consensus 3 ~kg~~~e~I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~-~~G~~~I~~~L~~kG-i~--~~~i~~~l~---~~~~~e~a 75 (121)
T PF02631_consen 3 RKGFSEEAIEEVIDRLKELGYIDDERYAESYVRSRLRRK-GKGPRRIRQKLKQKG-ID--REIIEEALE---EYDEEEEA 75 (121)
T ss_dssp HTT--HHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-T--HHHHHHHHHHTT-----HHHHHHHHT---CS-HHHHH
T ss_pred ccCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccc-cccHHHHHHHHHHHC-CC--hHHHHHHHH---HhhHHHHH
Confidence 34556666777777787888765544 3555555422 233456667777777 43 333334444 22334455
Q ss_pred HHHHHHHHhC-CCCCCHhhHHHHHHHHHHcC-ChhHHHHHHH
Q 025226 162 MQVWESMRKE-DLFPDSQTYTEVIRGFLKDG-SPADAMNIYE 201 (256)
Q Consensus 162 ~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~ 201 (256)
.++.++-... .-.++.....-++..+.+.| ..+.+..+++
T Consensus 76 ~~~~~kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~i~~vi~ 117 (121)
T PF02631_consen 76 LELAEKKYRRYRKPSDRKRKQKLIRFLMRRGFSYDVIRRVIS 117 (121)
T ss_dssp HHHHHHHHHHTTTS-CHHHHHHHHHHHHHTT--HHHHHHHCH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCCHHHHHHHHh
Confidence 5555544332 23456677777777777776 3444444443
No 424
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.43 E-value=4.5e+02 Score=23.80 Aligned_cols=86 Identities=9% Similarity=0.114 Sum_probs=56.5
Q ss_pred HHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC----------CCHhhHHHHHHHHH
Q 025226 122 TILAVKIFDI-IRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LF----------PDSQTYTEVIRGFL 188 (256)
Q Consensus 122 ~~~a~~~~~~-m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~----------p~~~t~~~li~~~~ 188 (256)
.++..+.+.. +.+.| +..+......++... .|++..|...++++...+ +. +.....-.+++++
T Consensus 177 ~~el~~~L~~i~~~eg-i~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al- 252 (504)
T PRK14963 177 EEEIAGKLRRLLEAEG-REAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL- 252 (504)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-
Confidence 3455555544 34556 777777666665544 488999988888876543 11 1122244456665
Q ss_pred HcCChhHHHHHHHHHHhCCCCCC
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
..++.++|+.++++|...|..|.
T Consensus 253 ~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 253 AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHH
Confidence 56899999999999999987665
No 425
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=28.19 E-value=2.7e+02 Score=21.09 Aligned_cols=19 Identities=5% Similarity=-0.108 Sum_probs=8.6
Q ss_pred hhHHHHHHHHhcCCCChHH
Q 025226 212 ELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 212 ~~t~~~li~~~~~~g~~~~ 230 (256)
+..++++.+.|+..|+-..
T Consensus 116 ~gl~~Vl~qrY~~RgkSk~ 134 (176)
T PF06576_consen 116 PGLINVLRQRYCGRGKSKR 134 (176)
T ss_pred cchHHHHHHHHHcccccHH
Confidence 3444445555554444333
No 426
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.00 E-value=88 Score=27.61 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=48.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhH----HHHHHHHhcCCC-Ch
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP----FRILLKGLLPHP-LL 228 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t----~~~li~~~~~~g-~~ 228 (256)
....+++|.++-++-...|.... -|-+-.|.+++.++.++|+.||..| ..-.+.+|+-.| -+
T Consensus 215 ~a~~ldeAl~~a~~~~~ag~p~S-------------Igl~GNaaei~~~l~~r~~~pD~vtDQTsaHdp~~GY~P~G~s~ 281 (561)
T COG2987 215 IAETLDEALALAEEATAAGEPIS-------------IGLLGNAAEILPELLRRGIRPDLVTDQTSAHDPLNGYLPVGYTV 281 (561)
T ss_pred hcCCHHHHHHHHHHHHhcCCceE-------------EEEeccHHHHHHHHHHcCCCCceecccccccCcccCcCCCcCCH
Confidence 34678999999988887664322 3456678999999999999997654 556788898887 34
Q ss_pred HHHHH
Q 025226 229 RSKVK 233 (256)
Q Consensus 229 ~~a~~ 233 (256)
+++-+
T Consensus 282 ee~~~ 286 (561)
T COG2987 282 EEADE 286 (561)
T ss_pred HHHHH
Confidence 44433
No 427
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=27.95 E-value=3.7e+02 Score=22.64 Aligned_cols=79 Identities=19% Similarity=0.193 Sum_probs=47.5
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHH-----------HHHHHcCChhHH
Q 025226 130 DIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVI-----------RGFLKDGSPADA 196 (256)
Q Consensus 130 ~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li-----------~~~~~~g~~~~a 196 (256)
.+..+.| ++.+..+.+.|+..+. |+...+..-++++.-. +-..|......++ .-+...|+..+|
T Consensus 151 ~~~~~~~-l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a 227 (334)
T COG1466 151 KRAKELG-LKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKA 227 (334)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHH
Confidence 3455555 6777777777766666 5666666555555432 1022222222111 123457999999
Q ss_pred HHHHHHHHhCCCCCC
Q 025226 197 MNIYEDMIKSPDPPE 211 (256)
Q Consensus 197 ~~~~~~M~~~g~~p~ 211 (256)
..+++++...|..|=
T Consensus 228 ~~~l~~L~~~ge~p~ 242 (334)
T COG1466 228 LRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHHHHHHcCCcHH
Confidence 999999999988763
No 428
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=27.71 E-value=1.7e+02 Score=20.88 Aligned_cols=41 Identities=12% Similarity=0.157 Sum_probs=19.7
Q ss_pred HHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHH
Q 025226 161 AMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 161 a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
..++|..|.++|+--.. .-|-.--.-+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555555544332 223333333444556666655554
No 429
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=27.61 E-value=1.9e+02 Score=20.76 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=10.6
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 025226 153 ARTGKMNEAMQVWESMRKED 172 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g 172 (256)
...|+++.|.++.+-..+.|
T Consensus 59 ~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 59 FDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hcccCHHHHHHHHHHHHHcC
Confidence 44555555555555555544
No 430
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=27.55 E-value=2.4e+02 Score=21.30 Aligned_cols=45 Identities=13% Similarity=0.424 Sum_probs=39.0
Q ss_pred HHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 025226 127 KIFDIIRK-QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED 172 (256)
Q Consensus 127 ~~~~~m~~-~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g 172 (256)
++++.+.+ .| +.|...++.-++..+++.=..+.+.++|+.+...|
T Consensus 152 ~l~~~l~~~~~-i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG 197 (199)
T smart00164 152 DLYKHLKDKLG-IDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEG 197 (199)
T ss_pred HHHHHHHHhcC-CCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcC
Confidence 56667775 77 89999999999999999889999999999988766
No 431
>PRK05414 urocanate hydratase; Provisional
Probab=27.26 E-value=82 Score=28.24 Aligned_cols=66 Identities=17% Similarity=0.241 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhH----HHHHHHHhcCCC-ChH
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP----FRILLKGLLPHP-LLR 229 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t----~~~li~~~~~~g-~~~ 229 (256)
..++|+|.+..++.++.+-.. .-|-+-.|.+++.++.++|+.||..| ..-.+.+|+-.| -++
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~-------------SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~e 282 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPL-------------SIGLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTLE 282 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCce-------------EEEEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCHH
Confidence 367899999999988865332 23456678999999999999987654 445566999888 556
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
++.+
T Consensus 283 e~~~ 286 (556)
T PRK05414 283 EAAE 286 (556)
T ss_pred HHHH
Confidence 6555
No 432
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=27.17 E-value=2.5e+02 Score=20.39 Aligned_cols=120 Identities=16% Similarity=0.088 Sum_probs=65.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCC--CCCHhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII-ALARTGKMNEAMQVWESMRKEDL--FPDSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~ 188 (256)
.-..+...++...+...+....... ..+ .......-. .+...|+++.|...|++.....- ......+......+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (291)
T COG0457 101 LGLLLEALGKYEEALELLEKALALD-PDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLE 178 (291)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCC-CCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHH
Confidence 4444455566677777777666543 122 122222222 66777777777777777644111 112333344444455
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
..++.+.+...+.+............+..+-..+...+.++++..
T Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 179 ALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred HhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 666777777777776655221134556666666666666666655
No 433
>TIGR01914 cas_Csa4 CRISPR-associated protein, Csa4 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats. The species range for this species, so far, is exclusively archaeal. It is found so far in only four different species, and includes two tandem genes in Pyrococcus furiosus DSM 3638. This subfamily is found in a CRISPR/Cas locus we designate APERN, so the family is designated Csa4, for CRISPR/Cas Subtype Protein 4.
Probab=27.14 E-value=3.9e+02 Score=22.71 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=51.7
Q ss_pred HHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 146 KDLIIA--LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 146 ~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
+.+++. +.|..++-...++.+.+.+. |...-++|+++.. .|+-+.-...++.|.+.|+.++....+.|.+.++
T Consensus 278 ~~LmdfI~~lK~r~~y~~~kfvd~L~r~----d~e~~~~L~~ai~-~~~~~~~Ysa~R~~k~~g~~~~~~~v~~lae~l~ 352 (354)
T TIGR01914 278 GVLMDFIAYLKARDFYSWPKFVDFLARR----DPEISLQLTDAIL-NGDEEAFYTALRELKKSGVRYDPEQVDALAEILA 352 (354)
T ss_pred hHHHHHHHHHhhhhhcchHHHHHHHhcc----ChHHHHHHHHHHH-cCChhHHHHHHHHHhhcCCCCCHHHHHHHHHHHh
Confidence 344443 34444555567777777764 4455777777765 5667777888888999999999999988888765
Q ss_pred C
Q 025226 224 P 224 (256)
Q Consensus 224 ~ 224 (256)
.
T Consensus 353 ~ 353 (354)
T TIGR01914 353 E 353 (354)
T ss_pred c
Confidence 3
No 434
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=27.03 E-value=59 Score=28.46 Aligned_cols=50 Identities=18% Similarity=0.158 Sum_probs=34.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDA----YIYKDLIIALARTGKMNEAMQVWE 166 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~ 166 (256)
-+|+.|+.+....+|+...+.| .-|. ..|..|=++|.-.+++++|.+...
T Consensus 26 RLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~ 79 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHT 79 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhh
Confidence 4678888888888888888777 3333 345555566666677777776654
No 435
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=27.01 E-value=1.4e+02 Score=17.52 Aligned_cols=21 Identities=14% Similarity=0.275 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 025226 150 IALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~ 170 (256)
-++.+.|++++|.+..+.+.+
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 355667777777777777666
No 436
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=26.49 E-value=2.9e+02 Score=20.97 Aligned_cols=96 Identities=14% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH-
Q 025226 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI- 204 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~- 204 (256)
.+|++.+.+.| ..-|..--.+.|..-.+.| ..-..+..++.+.|+ +..+-...+..++.....+.|..++.+-.
T Consensus 55 e~Vi~~l~~~~-~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~ 129 (174)
T COG2137 55 EEVIDRLAEEG-YLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFK 129 (174)
T ss_pred HHHHHHHHHcC-cccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhC
Confidence 33444444444 2333333333344444444 233445555556663 33333444454455555555555544333
Q ss_pred hCCCCCChhHHHHHHHHhcCCC
Q 025226 205 KSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 205 ~~g~~p~~~t~~~li~~~~~~g 226 (256)
..+..|+..-..-+.+.+...|
T Consensus 130 ~~~~~~~~~~k~Ki~r~L~~rG 151 (174)
T COG2137 130 RENKPPDKKEKAKIQRFLLRRG 151 (174)
T ss_pred ccccCcchhHHHHHHHHHHHcC
Confidence 2334455444444555555555
No 437
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.32 E-value=4.2e+02 Score=22.79 Aligned_cols=111 Identities=14% Similarity=-0.006 Sum_probs=55.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHH--HcCChh
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQT--YTEVIRGFL--KDGSPA 194 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~--~~g~~~ 194 (256)
.|.+.+|-..++++.+. ++.|...++-.=++|...|+.+.-...+++.... -.||... |-.=|.+|+ .+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555566666555 3556666666666666666666666666655432 1133322 222222222 456666
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 195 ~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+|.+.-++-.+.+- .|.-.-.++...+--.|+..++++
T Consensus 193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHH
Confidence 66665555444321 122233334444444445555544
No 438
>cd08791 DED_DEDD2 Death Effector Domain of DEDD2. Death Effector Domain (DED) found in DEDD2. DEDD2 has been shown to bind to itself, DEDD, and to the two tandem DED-containing caspases, caspase-8 and -10. It may play a role in apoptosis. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes. In mammals, they are prominent components of the programmed cell death (apoptosis) pathway and are found in a number of other signaling pathways.
Probab=26.32 E-value=2e+02 Score=19.68 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY 180 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 180 (256)
....+.++|..+.++| .-+...+.-++..+.--++.|-...+-.+ +..-+.|+.++|
T Consensus 48 ~i~SGldLf~~Leer~--~l~e~Nt~~L~qLLr~i~RhDLl~~v~~k-~r~~v~p~~~~~ 104 (106)
T cd08791 48 RPKSGVELLLELERRG--YCDESNLRPLLQLLRVLTRHDLLPFVSQK-RRRTVSPERYKY 104 (106)
T ss_pred hccCHHHHHHHHHHhC--cCChhhHHHHHHHHHHhhHHHHHHHHHHh-ccCCCCcchhcc
Confidence 5667888999988888 55556666777777777766666655443 334577777665
No 439
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=26.31 E-value=91 Score=27.85 Aligned_cols=66 Identities=20% Similarity=0.242 Sum_probs=48.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhH----HHHHHHHhcCCC-ChH
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP----FRILLKGLLPHP-LLR 229 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t----~~~li~~~~~~g-~~~ 229 (256)
..++|+|.+..++.++.+-..+ -|-+-.|.++|.++.++|+.||..| ..-.+.+|+-.| -++
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~S-------------Ig~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~e 273 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPIS-------------IGLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTVE 273 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceE-------------EEeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCHH
Confidence 4678999999998887654322 3446678999999999999986544 556677899888 556
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
++.+
T Consensus 274 e~~~ 277 (545)
T TIGR01228 274 DADK 277 (545)
T ss_pred HHHH
Confidence 6555
No 440
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=26.29 E-value=2.6e+02 Score=20.30 Aligned_cols=117 Identities=18% Similarity=0.125 Sum_probs=82.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 025226 115 ELERQEETILAVKIFDIIRKQDWY--QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS 192 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~--~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 192 (256)
.+...|+++.|...|.+..... . ......+......+...++.+++...+.+............+..+-..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELD-PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 6888999999999999986532 1 134455555555577889999999999998874221136778888888888889
Q ss_pred hhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 193 PADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 193 ~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.+.|...+......... ....+..+...+...|.++++..
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 257 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALE 257 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHH
Confidence 99999999988776322 23444444455556666777776
No 441
>COG5210 GTPase-activating protein [General function prediction only]
Probab=26.09 E-value=1.9e+02 Score=25.96 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 025226 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
++++.|++.|+.+...++..++..+.+.-.++.|.++++.+--.|+
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~ 408 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGS 408 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 5555555556656666666666666666666666666655554443
No 442
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=25.82 E-value=3.3e+02 Score=24.12 Aligned_cols=54 Identities=13% Similarity=0.430 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 025226 128 IFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185 (256)
Q Consensus 128 ~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 185 (256)
+|..+.+.. +.||.+.+.-+...|.+.=-+|-|.++++-....| +...|.+.+.
T Consensus 461 L~~Hl~kl~-l~PDiylidwiftlyskslpldlacRIwDvy~rdg---eeFlfr~~lg 514 (586)
T KOG2223|consen 461 LFTHLKKLE-LTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDG---EEFLFRTALG 514 (586)
T ss_pred HHHHHHhcc-CCCchhhHHHHHHHHhccCChHHhhhhhheeeecc---hHHHHHHHHH
Confidence 344445555 77777777777777777777777777777666543 3444444333
No 443
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=25.33 E-value=64 Score=22.91 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=18.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYT 181 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 181 (256)
-.|+.+.|.++++.+...|+.|..+.|.
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~ 36 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWA 36 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHH
Confidence 3577777777777777777777776664
No 444
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=25.10 E-value=1.8e+02 Score=21.28 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=29.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
++..+.+.|-..+...+.++|.+.| +..+...|+-.+.-
T Consensus 115 vL~~ak~kgLisk~Kpild~LI~~G-F~iS~~~~eeiL~~ 153 (157)
T COG2405 115 VLALAKSKGLISKDKPILDELIEKG-FRISRSILEEILRK 153 (157)
T ss_pred HHHHHHHcCcccchHHHHHHHHHhc-CcccHHHHHHHHHH
Confidence 5666666777788888888888888 88888887776653
No 445
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.99 E-value=2.2e+02 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.107 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKD 147 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~ 147 (256)
++++.|.+.|.+++|++++.-.++...--|+......
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~ 147 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKS 147 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHH
Confidence 6899999999999999999877655423455444433
No 446
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.93 E-value=3.3e+02 Score=21.03 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCC--CcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH-HHHHHH--HHHh
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLK--MDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYI-YKDLII--ALAR 154 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~-y~~li~--~~~~ 154 (256)
-+.+.+..++|+..| ....+.|.. |... -+-......|+-..|...|++.-..- -.|-..- -.-|=. .+..
T Consensus 67 ~lA~~~k~d~Alaaf-~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 67 KLAQENKTDDALAAF-TDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHcCCchHHHHHH-HHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhc
Confidence 457888899998655 567766643 3222 13334567899999999999998776 4555441 222222 3457
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
.|.+++.....+-+-..+-..-...=.+|=-+--+.|++.+|...|......--.|-
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 799999988888776544333333344555556689999999999998886544443
No 447
>COG5210 GTPase-activating protein [General function prediction only]
Probab=24.90 E-value=2.3e+02 Score=25.41 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG 186 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~ 186 (256)
+.--++++.|++.| +.+..+++..++..+.+.-..+.+.++++.+--.|+.-....+-+++..
T Consensus 359 ~~~p~l~~hl~~~~-~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~ 421 (496)
T COG5210 359 ELDPELYEHLLREG-VVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHHHHHcC-CchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 33456788999999 8999999999999999999999999999999877665444444444333
No 448
>PF07218 RAP1: Rhoptry-associated protein 1 (RAP-1); InterPro: IPR009864 This family consists of several rhoptry-associated protein 1 (RAP-1) sequences which appear to be specific to Plasmodium falciparum [].
Probab=24.76 E-value=3e+02 Score=25.17 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=37.5
Q ss_pred HHHhcC--CHHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 151 ALARTG--KMNEAMQVWESMRKE-----DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 151 ~~~~~g--~~~~a~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
-|.... .+-+|..+++.+.+. .+--++..||++|++- .++...++.-|.+.|+--| ..|++|+.-
T Consensus 587 ~Y~~~d~~nI~~a~~my~~i~e~~RlyssCfKN~iIYNaVISgI-----heqmK~lmkl~PR~~iL~D-iHF~aLL~K 658 (782)
T PF07218_consen 587 KYVEHDKSNIYEALQMYSYIAEYIRLYSSCFKNMIIYNAVISGI-----HEQMKNLMKLMPRKPILKD-IHFEALLNK 658 (782)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHH-----HHHHHHHHHhCCCcchhHH-HHHHHHhhh
Confidence 344444 556666666665532 3456888999999875 4556666666665553222 344444443
No 449
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=24.18 E-value=2.1e+02 Score=18.64 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 166 (256)
-+++.+++....+.. ..+..|-..|+.++.++|+-+-|.++-+
T Consensus 42 ~eq~~~mL~~W~~~~--~~~~atv~~L~~AL~~~gr~dlae~l~~ 84 (86)
T cd08779 42 DEQIFDMLFSWAQRQ--AGDPDAVGKLVTALEESGRQDLADEVRA 84 (86)
T ss_pred HHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHcCHHHHHHHHHh
Confidence 466666666555543 2345567788888888888777776643
No 450
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=24.15 E-value=21 Score=20.90 Aligned_cols=41 Identities=17% Similarity=0.178 Sum_probs=23.3
Q ss_pred HhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 025226 100 HVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDA 142 (256)
Q Consensus 100 ~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 142 (256)
....|..+... ..|. -..=|++.|..+|.+++..|.++|+.
T Consensus 8 s~~Tgmn~~~s~~CL~--~n~Wd~~~A~~~F~~l~~~~~IP~eA 49 (51)
T PF03943_consen 8 SQQTGMNLEWSQKCLE--ENNWDYERALQNFEELKAQGKIPPEA 49 (51)
T ss_dssp HHHCSS-CCHHHHHHH--HTTT-CCHHHHHHHHCCCTT-S-CCC
T ss_pred HHHHCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHcCCCChHh
Confidence 34556666554 2222 12347889999999998888665553
No 451
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=24.10 E-value=5.6e+02 Score=23.47 Aligned_cols=152 Identities=5% Similarity=-0.013 Sum_probs=85.3
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
-..+++..+.......- ++-+...|...| .+.+..+++..|... .-++-..+|+++.+.. .|.+..+--+.-+-
T Consensus 68 ~l~~~~~~f~~n~k~~~-veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d---fnDvv~~ReLa~~y 142 (711)
T COG1747 68 CLVTLLTIFGDNHKNQI-VEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD---FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHHhccchHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc---chhHHHHHHHHHHH
Confidence 33344444444333222 233334444433 333444677777776 5666677777777664 23344444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCChhHHHHHHHHhcCCCC
Q 025226 154 RTGKMNEAMQVWESMRKEDLFP-----DSQTYTEVIRGFLKDGSPADAMNIYEDMIK-SPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~a~~~~~~M~~-~g~~p~~~t~~~li~~~~~~g~ 227 (256)
..++.+++..+|.+...+=+.. =...|.-|+.-- ..+.|....+..+... .|..--.+.+.-+-.-|..+.+
T Consensus 143 Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 143 EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 4477777777777766532110 112444444322 3456666666666654 3666666777777788888889
Q ss_pred hHHHHH
Q 025226 228 LRSKVK 233 (256)
Q Consensus 228 ~~~a~~ 233 (256)
+.++++
T Consensus 221 ~~eai~ 226 (711)
T COG1747 221 WTEAIR 226 (711)
T ss_pred HHHHHH
Confidence 999888
No 452
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=24.00 E-value=4.1e+02 Score=22.50 Aligned_cols=88 Identities=10% Similarity=0.135 Sum_probs=64.1
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER---QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
....+|..|++..+...++..+ -.+.++..+.+.-+.+|+. +|+|+-++...+.++--. +.-...|..++--
T Consensus 9 dVIrli~QflKE~~L~rtl~tL---QeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLKLP~--kkL~dLYEqivlE 83 (508)
T KOG0275|consen 9 DVIRLIEQFLKENSLHRTLQTL---QEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLKLPD--KKLIDLYEQIVLE 83 (508)
T ss_pred hHHHHHHHHHhhhhHHHHHHHH---HHhhccceeechhHHHHHHhcccCchHHHHHHHHhccCch--hHHHHHHHHHHHH
Confidence 4456788999999998887544 2345666676667778774 799999988888776221 2234567788888
Q ss_pred HHhcCCHHHHHHHHHH
Q 025226 152 LARTGKMNEAMQVWES 167 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~ 167 (256)
+....++..|..++.+
T Consensus 84 liELREL~tAR~~lRQ 99 (508)
T KOG0275|consen 84 LIELRELGTARSLLRQ 99 (508)
T ss_pred HHHHHhhhHHHHHHhc
Confidence 8888889999888876
No 453
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=23.62 E-value=74 Score=26.11 Aligned_cols=49 Identities=12% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~ 208 (256)
-+++...++++..++. .|++.|=+.||-|+.. ..++..++++.|.+.|+
T Consensus 194 A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGE--t~~Ev~e~m~DLr~~gv 242 (306)
T COG0320 194 ATYERSLSLLERAKEL--GPDIPTKSGLMVGLGE--TDEEVIEVMDDLRSAGV 242 (306)
T ss_pred CcHHHHHHHHHHHHHh--CCCcccccceeeecCC--cHHHHHHHHHHHHHcCC
Confidence 5789999999998874 5999999999998743 45789999999999886
No 454
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=23.59 E-value=3.2e+02 Score=20.43 Aligned_cols=105 Identities=10% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc---CCHHHHH-HHHHHHHhC--CCCCCHhhHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART---GKMNEAM-QVWESMRKE--DLFPDSQTYTEVI 184 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~---g~~~~a~-~~~~~m~~~--g~~p~~~t~~~li 184 (256)
-|=..|+..|.. --.+-++.|.+.+ |.+..|+.+|..++.. -+.++.. .-|...-.. |. .+...+--++
T Consensus 53 DL~d~~aSlGk~-~~d~elDaM~~Ea---~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~-I~~d~lre~L 127 (171)
T KOG0031|consen 53 DLRDMLASLGKI-ASDEELDAMMKEA---PGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGK-IDEDYLRELL 127 (171)
T ss_pred HHHHHHHHcCCC-CCHHHHHHHHHhC---CCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCc-cCHHHHHHHH
Confidence 466666666766 4455667777664 5677888888888754 3333321 222222222 32 3344444444
Q ss_pred HHHHHcCChhHHHHHHHHHHh-CCCCCChhHHHHHHH
Q 025226 185 RGFLKDGSPADAMNIYEDMIK-SPDPPEELPFRILLK 220 (256)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~M~~-~g~~p~~~t~~~li~ 220 (256)
...+..=..+++.++|+.+.. .+-..|...+..+|.
T Consensus 128 tt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 128 TTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 443333345677777777654 233345555555544
No 455
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.44 E-value=2.3e+02 Score=18.76 Aligned_cols=42 Identities=12% Similarity=0.227 Sum_probs=18.8
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
++|+=....|+..|...|-.+++-.--+=-++...++++.|-
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444444555555555444444433333444444444443
No 456
>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins. The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.
Probab=23.27 E-value=1.6e+02 Score=19.13 Aligned_cols=36 Identities=17% Similarity=0.259 Sum_probs=28.7
Q ss_pred CCCCHhhHHHHHHHHHHcCCh---hHHHHHHHHHHhCCC
Q 025226 173 LFPDSQTYTEVIRGFLKDGSP---ADAMNIYEDMIKSPD 208 (256)
Q Consensus 173 ~~p~~~t~~~li~~~~~~g~~---~~a~~~~~~M~~~g~ 208 (256)
.-|+..+-+-+++.+.+.+.. ++|..+-+.+.+.|+
T Consensus 24 ~~~~cF~GselVdWL~~~~~~~~r~eAv~lg~~Ll~~G~ 62 (81)
T cd04439 24 TFPKCFLGNEFVSWLLEIGEISKPEEGVNLGQALLENGI 62 (81)
T ss_pred EcCceeEhHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 347777888888888887755 589999999998875
No 457
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=23.25 E-value=81 Score=22.37 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=21.1
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKD 147 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~ 147 (256)
-.|+.+.|.++++.++.+| +.|....|..
T Consensus 9 L~G~~~ra~riL~~L~~Eg-~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEG-VEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT---HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCC-ccHHHHHHHH
Confidence 3688899999999999998 8888777753
No 458
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=23.18 E-value=8.1e+02 Score=24.96 Aligned_cols=17 Identities=35% Similarity=0.401 Sum_probs=12.4
Q ss_pred CCCCHHHHHHHHHHHHh
Q 025226 138 YQPDAYIYKDLIIALAR 154 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~ 154 (256)
++|+...+.....+|+.
T Consensus 931 y~~~~e~~k~i~~~ya~ 947 (1265)
T KOG1920|consen 931 YKPDSEKQKVIYEAYAD 947 (1265)
T ss_pred eccCHHHHHHHHHHHHH
Confidence 47888888777777663
No 459
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=23.14 E-value=4.7e+02 Score=22.18 Aligned_cols=72 Identities=11% Similarity=-0.018 Sum_probs=37.2
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
+...+++.+..+-++|++..+ |+.. .+=++......|.+-.++..+-. ..-..+|.-|+.++|..|+.+-.
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qa-----lrhlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQA-----LRHLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHH-----HHHHHhhhHHHHHHhcCChHHHH
Confidence 334444444344444555554 4433 12233333444544333332211 12345899999999999987766
Q ss_pred H
Q 025226 162 M 162 (256)
Q Consensus 162 ~ 162 (256)
.
T Consensus 341 L 341 (412)
T KOG2297|consen 341 L 341 (412)
T ss_pred H
Confidence 4
No 460
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.06 E-value=4.1e+02 Score=23.11 Aligned_cols=49 Identities=14% Similarity=-0.122 Sum_probs=27.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---H----HHHHHH--HcCCHHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---A----VLIELE--RQEETILAVKIF 129 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~----li~~~~--~~~~~~~a~~~~ 129 (256)
+..+.+.+++..|. .++.++..+.+.|+.. . +-.+|. ..-+.++|.+.+
T Consensus 137 ~r~l~n~~dy~aA~-~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L 194 (380)
T TIGR02710 137 ARRAINAFDYLFAH-ARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYL 194 (380)
T ss_pred HHHHHHhcChHHHH-HHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44566778888886 4556777766655443 1 333332 234556665555
No 461
>cd08777 Death_RIP1 Death Domain of Receptor-Interacting Protein 1. Death domain (DD) found in Receptor-Interacting Protein 1 (RIP1) and related proteins. RIP kinases serve as essential sensors of cellular stress. Vertebrates contain several types containing a homologous N-terminal kinase domain and varying C-terminal domains. RIP1 harbors a C-terminal DD, which binds death receptors (DRs) including TNF receptor 1, Fas, TNF-related apoptosis-inducing ligand receptor 1 (TRAILR1), and TRAILR2. It also interacts with other DD-containing adaptor proteins such as TRADD and FADD. RIP1 plays a crucial role in determining a cell's fate, between survival or death, following exposure to stress signals. It is important in the signaling of NF-kappaB and MAPKs, and it links DR-associated signaling to reactive oxygen species (ROS) production. Abnormal RIP1 function may result in ROS accumulation affecting inflammatory responses, innate immunity, stress responses, and cell survival. In general, DDs ar
Probab=23.00 E-value=2.3e+02 Score=18.56 Aligned_cols=42 Identities=10% Similarity=0.001 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVW 165 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~ 165 (256)
-+.+.+++...+++. .....|-..|+.++.++|+.+-..++.
T Consensus 43 ~eq~~~mL~~W~~r~--g~~~ATv~~L~~aL~~~~r~di~~~l~ 84 (86)
T cd08777 43 KEKVHQMLHKWKMKE--GSKGATVGKLAQALEGCIKPDLLVSLI 84 (86)
T ss_pred HHHHHHHHHHHHHcc--CCCCcHHHHHHHHHHHcchhhHHHHHH
Confidence 467777777666553 223346778888888887777666554
No 462
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=22.66 E-value=2.8e+02 Score=19.36 Aligned_cols=45 Identities=16% Similarity=0.316 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQ-----------------PDAYIYKDLIIALARTGKMNEAMQVWE 166 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~-----------------p~~~~y~~li~~~~~~g~~~~a~~~~~ 166 (256)
-.-|..++++|.+.||+. +-...+...+..+...|++++|.++++
T Consensus 33 ~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 33 RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356777788888887532 234555666677777788888888777
No 463
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.97 E-value=1.1e+02 Score=27.68 Aligned_cols=71 Identities=21% Similarity=0.320 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHhhHH---HHHHHHHHcCChhHHHH
Q 025226 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDL--F---PDSQTYT---EVIRGFLKDGSPADAMN 198 (256)
Q Consensus 127 ~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~--~---p~~~t~~---~li~~~~~~g~~~~a~~ 198 (256)
.+++++.-.| ++||.+||++ .-+++...+-.+|.+.|- . |....=. -=|..=|+...+++-++
T Consensus 254 ~IleDl~~Lg-Ikpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R~~~vEenl~ 324 (712)
T KOG1147|consen 254 VILEDLSLLG-IKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCRSNSVEENLR 324 (712)
T ss_pred HHHHHHHHhC-cCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhccccccccCCCHHHHHH
Confidence 4566777778 9999999975 234444444445544431 1 1111111 12334467788999999
Q ss_pred HHHHHHhC
Q 025226 199 IYEDMIKS 206 (256)
Q Consensus 199 ~~~~M~~~ 206 (256)
+|++|.+.
T Consensus 325 iw~EM~kG 332 (712)
T KOG1147|consen 325 IWEEMKKG 332 (712)
T ss_pred HHHHHhcc
Confidence 99999974
No 464
>PF12554 MOZART1: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR022214 This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important.
Probab=21.83 E-value=1.7e+02 Score=16.96 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=11.2
Q ss_pred HcCChhHHHHHHHHHHhCCCCC
Q 025226 189 KDGSPADAMNIYEDMIKSPDPP 210 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p 210 (256)
..|--.+++.+.-++.+.|+.|
T Consensus 16 ntgLd~etL~ici~L~e~GVnP 37 (48)
T PF12554_consen 16 NTGLDRETLSICIELCENGVNP 37 (48)
T ss_pred cCCCCHHHHHHHHHHHHCCCCH
Confidence 3444445555555555555544
No 465
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.82 E-value=3.1e+02 Score=19.63 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=22.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIY-KDLIIALARTGKMNEAMQVWE 166 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y-~~li~~~~~~g~~~~a~~~~~ 166 (256)
+-.++.-.|..++|.++++..+ -.++=... .-++..|.++.+-++..++-+
T Consensus 72 lAAaLyI~G~~~~A~~lL~~Fk----WG~~F~~LN~elLe~Y~~~~~~~ev~~~q~ 123 (127)
T PF04034_consen 72 LAAALYILGFKEQAEELLSKFK----WGHTFLELNKELLEAYAKCKTSEEVIEIQN 123 (127)
T ss_pred HHHHHHHcCCHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4444445555555555544432 11222222 234555555555554444433
No 466
>cd08311 Death_p75NR Death domain of p75 Neurotophin Receptor. Death Domain (DD) found in p75 neurotrophin receptor (p75NTR, NGFR, TNFRSF16). p75NTR binds members of the neurotrophin (NT) family including nerve growth factor (NGF), brain-derived neurotrophic factor (BDNF), and NT3, among others. It contains an NT-binding extracellular region that bears four cysteine-rich repeats, a transmembrane domain, and an intracellular DD. p75NTR plays roles in the immune, vascular, and nervous systems, and has been shown to promote cell death or survival, and to induce neurite outgrowth or collapse depending on its ligands and co-receptors. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptor
Probab=21.63 E-value=2.3e+02 Score=18.12 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 163 (256)
+.+.+++.....+ ++ .|.+.|+.++.+.|+.|-+..
T Consensus 40 ~p~~~lL~~W~~r----~~-ATv~~L~~aL~~i~R~Di~~~ 75 (77)
T cd08311 40 SPVRTLLADWSAQ----EG-ATLDALCTALRRIQREDIAES 75 (77)
T ss_pred hHHHHHHHHHHHC----cC-chHHHHHHHHHHcChHHHHHh
Confidence 6677777766643 23 677777888777777766654
No 467
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.32 E-value=7.3e+02 Score=23.76 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=28.1
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
+.++++.|+.++.+|.+.|..|....=..++-+.-.-|.
T Consensus 270 rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 270 RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 457888888888888888888876666666655545553
No 468
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=21.30 E-value=1.4e+02 Score=19.51 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVW 165 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~ 165 (256)
+.|+...||-+|+.....+...-|..++
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L 39 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYL 39 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHH
Confidence 3444444444444444444444443333
No 469
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.28 E-value=3.5e+02 Score=24.83 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
.++..|.+.|-.+.|.++.+.+-.+- . ...-|..-|.-+.++|+.+....+-+.+.+.
T Consensus 410 k~l~iC~~~~L~~~a~~I~~~~~~~~-~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 410 KLLEICAELGLEDVAREICKILGQRL-L--KEGRYGEALSWFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-H--HCCCHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 48999999999999999988776553 2 3456888888888888888777776666543
No 470
>cd08818 CARD_MDA5_1 Caspase activation and recruitment domain found in MDA5, first repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), first repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-
Probab=21.05 E-value=2.6e+02 Score=18.53 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhccCCCcHH-HHHHHHHHcCC
Q 025226 92 KLQKFIKTHVLRLLKMDIV-AVLIELERQEE 121 (256)
Q Consensus 92 a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~ 121 (256)
|.+.+++.+.+....|.+. .++.|+-++|.
T Consensus 51 AA~~LL~~l~~~~~~~GWf~~FldAL~~~G~ 81 (88)
T cd08818 51 AAELLLSTLEKGTWDPGWFREFVTALEQGGC 81 (88)
T ss_pred HHHHHHHHHHHhccCCchHHHHHHHHHhcCC
Confidence 3345555554444555555 45555555553
No 471
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.99 E-value=3.9e+02 Score=21.99 Aligned_cols=81 Identities=17% Similarity=0.182 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHhhHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE-----DLFPDSQTYTEVIR 185 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~t~~~li~ 185 (256)
.-|..+...|++.+|+++..+..+.= . +-.-|+++ ..+ ...+++-....+++.+. -..-|...|..++.
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~~l--~-~l~~~~c~-~~L--~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~ 205 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQLL--E-ELKGYSCV-RHL--SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQE 205 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH--H-hcccchHH-HHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 46777888999999999999877541 1 10111111 000 11233333333333221 12478999999999
Q ss_pred HHHHcCChhHHH
Q 025226 186 GFLKDGSPADAM 197 (256)
Q Consensus 186 ~~~~~g~~~~a~ 197 (256)
||.-.|+.+.+.
T Consensus 206 AY~lLgk~~~~~ 217 (291)
T PF10475_consen 206 AYQLLGKTQSAM 217 (291)
T ss_pred HHHHHhhhHHHH
Confidence 999999876655
No 472
>PHA00425 DNA packaging protein, small subunit
Probab=20.96 E-value=2.5e+02 Score=18.21 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
+.+.|.+++..++... +.++..||++=..+.++
T Consensus 14 DTE~a~~mL~DL~dde--kRtPQLYnAIgKlL~RH 46 (88)
T PHA00425 14 DTEMAQRMLADLKDDE--KRTPQLYNAIGKLLDRH 46 (88)
T ss_pred hHHHHHHHHHHhcCcc--ccChHHHHHHHHHHHHh
Confidence 4677888888887664 77888888876665554
No 473
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.89 E-value=5.2e+02 Score=21.91 Aligned_cols=73 Identities=5% Similarity=0.120 Sum_probs=37.2
Q ss_pred HhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C-----------CCCCHhhHHHHHHHHHHcCChhHHHH
Q 025226 133 RKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE---D-----------LFPDSQTYTEVIRGFLKDGSPADAMN 198 (256)
Q Consensus 133 ~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g-----------~~p~~~t~~~li~~~~~~g~~~~a~~ 198 (256)
.+.| +..+......++.. -.|++..+...++.+... + ..++...+. ++++. ..|+..+|..
T Consensus 181 ~~~g-~~i~~~al~~l~~~--~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~~~~~~if~-l~~ai-~~~~~~~a~~ 255 (367)
T PRK14970 181 VKEG-IKFEDDALHIIAQK--ADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYDTYIN-VTDLI-LENKIPELLL 255 (367)
T ss_pred HHcC-CCCCHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCCHHHHHH-HHHHH-HcCCHHHHHH
Confidence 3445 55555555555543 225666666666665421 1 111111222 34443 3467777777
Q ss_pred HHHHHHhCCCCC
Q 025226 199 IYEDMIKSPDPP 210 (256)
Q Consensus 199 ~~~~M~~~g~~p 210 (256)
+++++...|..|
T Consensus 256 ~~~~l~~~~~~~ 267 (367)
T PRK14970 256 AFNEILRKGFDG 267 (367)
T ss_pred HHHHHHHcCCCH
Confidence 777777666655
No 474
>PHA02875 ankyrin repeat protein; Provisional
Probab=20.64 E-value=4.7e+02 Score=22.44 Aligned_cols=43 Identities=9% Similarity=-0.075 Sum_probs=19.6
Q ss_pred HHHHhCCCCCCHhhH---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh
Q 025226 166 ESMRKEDLFPDSQTY---TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~ 212 (256)
+.+.+.|..|+...- ++++...++.|+.+ +.+-+.+.|..|+.
T Consensus 185 ~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 185 KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 334445555554321 24444334555543 33444455655543
No 475
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=20.50 E-value=2.4e+02 Score=24.09 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=0.0
Q ss_pred cCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 85 RFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
+.|+..+|+..+.+.|++..+..-.. .||.++....-+.++..++.+--+..-.+.-+..|++.+
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaAL 354 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAAL 354 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHH
No 476
>PF01335 DED: Death effector domain; InterPro: IPR001875 The death effector domain (DED) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DED is related in sequence and structure to the death domain (DD, see IPR000488 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. The dimerisation of DED domains is mediated primarily by electrostatic interactions. DED domains can be found in isolation, or in combination with other domains. Domains associated with DED include: caspase catalytic domains (in caspase-8, -10), death domains (in FADD), nuclear localisation sequences (in DEDD), transmembrane domains (in Bap31 and Bar), nucleotide-binding domains (in Dap3), coiled-coil domains (in Hip and Hippi), SAM domains (in Bar), and E2-binding RING domains (in Bar) []. Several DED-containing proteins are involved in the regulation of apoptosis through their interactions with DED-containing caspases (IPR002398 from INTERPRO), such as caspases 8 and 10 in humans, both of which contain tandem pairs of DEDs. There are many DED-containing modulators of apoptosis, which can either enhance or inhibit caspase activation [].; GO: 0005515 protein binding, 0042981 regulation of apoptosis; PDB: 3CL3_A 2F1S_A 2BBZ_C 2BBR_A 1A1Z_A 2GF5_A 1A1W_A 1N3K_A.
Probab=20.46 E-value=2.5e+02 Score=18.02 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 025226 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWE 166 (256)
Q Consensus 125 a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~ 166 (256)
+.++|..|.+.+.+.|+ -...|...+...|+.|-+..+.+
T Consensus 39 ~~dlf~~Le~~~~i~~~--nl~~L~~lL~~i~R~DL~~~i~~ 78 (84)
T PF01335_consen 39 GLDLFEELEKRGLISPD--NLSLLKELLKRIGRPDLLKKIEE 78 (84)
T ss_dssp HHHHHHHHHHTTSSSTT--BHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCc--cHHHHHHHHHHhCHHHHHHHHHH
Confidence 56677777766633333 33455555566666666555544
No 477
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=20.38 E-value=5.8e+02 Score=22.27 Aligned_cols=101 Identities=10% Similarity=0.087 Sum_probs=61.3
Q ss_pred HHHHHHHhcCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH--H--HHHHcCChhHHHHH
Q 025226 127 KIFDIIRKQDWYQPDAY---IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVI--R--GFLKDGSPADAMNI 199 (256)
Q Consensus 127 ~~~~~m~~~~~~~p~~~---~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li--~--~~~~~g~~~~a~~~ 199 (256)
-+++.+.+.| +.|+.. .-.+++.++...+..++..+++..-. .|...+...- . ++...+..+.....
T Consensus 100 Gv~kaL~e~g-l~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (391)
T cd07229 100 GVVKALWLRG-LLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRR 173 (391)
T ss_pred HHHHHHHHcC-CCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHH
Confidence 3556677788 888874 45677888888887787777776421 1111111100 0 11112222334455
Q ss_pred HHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 200 YEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 200 ~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+.+..+.|.-.|...+.-.++.+...--++||.+
T Consensus 174 l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~ 207 (391)
T cd07229 174 IQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYA 207 (391)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHH
Confidence 5666667777788888887888777778888876
No 478
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=20.35 E-value=5.9e+02 Score=22.87 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP 224 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~ 224 (256)
..|+.-|.-.|+..+|....+++--- +---.+.+.+++-+.-+.|+-...+.++++.-..|+ +|-|-|-+||.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 45666666777777777777664320 111346778888888888887777777766665543 555555555544
No 479
>COG0292 RplT Ribosomal protein L20 [Translation, ribosomal structure and biogenesis]
Probab=20.15 E-value=3.2e+02 Score=19.10 Aligned_cols=13 Identities=31% Similarity=0.600 Sum_probs=5.6
Q ss_pred hhHHHHHHHHHHc
Q 025226 178 QTYTEVIRGFLKD 190 (256)
Q Consensus 178 ~t~~~li~~~~~~ 190 (256)
.||+.+|.++-++
T Consensus 74 lsYS~fi~gLkkA 86 (118)
T COG0292 74 LSYSRFINGLKKA 86 (118)
T ss_pred CcHHHHHHHHHHc
Confidence 3444444444333
No 480
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.06 E-value=3.8e+02 Score=23.80 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH-----HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM-----QVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADA 196 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~-----~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 196 (256)
=++|+.++-.+.+. +-|. +--+.|+.+-+..+-+++.. ++...+...|+.-+..|++-.|..+...+-.+.+
T Consensus 260 EE~AFW~Lv~iie~--~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~ 336 (436)
T KOG2058|consen 260 EEDAFWMLVALIEN--YLPR-YYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETV 336 (436)
T ss_pred hHHHHHHHHHHHHH--hchh-hcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHH
Confidence 35566666666655 3444 32333333333332222222 2333444456666778888888888888888888
Q ss_pred HHHHHHHHhCC
Q 025226 197 MNIYEDMIKSP 207 (256)
Q Consensus 197 ~~~~~~M~~~g 207 (256)
+++++-+--.|
T Consensus 337 LrIwD~~f~eG 347 (436)
T KOG2058|consen 337 LRIWDCLFYEG 347 (436)
T ss_pred HHHHHHHHhcc
Confidence 88888777665
Done!