Query 025226
Match_columns 256
No_of_seqs 179 out of 2686
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 06:09:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025226.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025226hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.1E-36 1.4E-40 263.1 20.4 179 75-255 28-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 9.4E-35 3.2E-39 254.5 15.0 198 13-225 7-223 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 2.9E-26 9.8E-31 208.6 10.3 142 111-254 132-283 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 2.6E-24 9E-29 195.8 9.0 118 138-255 123-248 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 8E-19 2.7E-23 156.1 12.9 242 3-254 279-561 (597)
6 2xpi_A Anaphase-promoting comp 99.8 5.5E-18 1.9E-22 150.7 13.8 230 7-254 350-595 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.5 8.9E-13 3E-17 111.1 15.7 154 76-233 206-360 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.4 3.1E-12 1.1E-16 107.7 15.1 238 5-255 76-351 (388)
9 2y4t_A DNAJ homolog subfamily 99.3 4.4E-12 1.5E-16 108.6 11.0 180 5-204 35-238 (450)
10 2y4t_A DNAJ homolog subfamily 99.3 8.6E-12 2.9E-16 106.8 12.4 237 5-253 69-339 (450)
11 1b89_A Protein (clathrin heavy 99.3 1.1E-12 3.9E-17 111.3 5.0 185 6-233 13-198 (449)
12 1fch_A Peroxisomal targeting s 99.2 2.2E-11 7.5E-16 101.4 9.5 212 5-233 73-306 (368)
13 4eqf_A PEX5-related protein; a 99.2 9.6E-12 3.3E-16 103.8 7.2 210 5-233 74-302 (365)
14 3cv0_A Peroxisome targeting si 99.2 4.5E-11 1.5E-15 97.6 10.2 209 6-233 31-261 (327)
15 3hym_B Cell division cycle pro 99.2 3.1E-10 1.1E-14 92.6 14.1 154 76-233 128-291 (330)
16 3hym_B Cell division cycle pro 99.2 3.6E-10 1.2E-14 92.2 13.8 230 6-253 32-280 (330)
17 2q7f_A YRRB protein; TPR, prot 99.1 8.2E-09 2.8E-13 80.5 19.0 196 28-242 26-225 (243)
18 3cv0_A Peroxisome targeting si 99.1 4E-10 1.4E-14 91.9 10.7 221 5-234 64-308 (327)
19 2ho1_A Type 4 fimbrial biogene 99.1 6.6E-09 2.3E-13 81.7 17.5 154 76-233 40-196 (252)
20 4eqf_A PEX5-related protein; a 99.1 1.4E-10 4.7E-15 96.7 7.7 221 5-235 108-350 (365)
21 2ho1_A Type 4 fimbrial biogene 99.1 4E-09 1.4E-13 83.0 15.4 195 34-246 46-245 (252)
22 3mkr_A Coatomer subunit epsilo 99.1 4.2E-10 1.4E-14 91.6 9.4 205 5-232 43-254 (291)
23 2vq2_A PILW, putative fimbrial 99.1 2.3E-08 7.8E-13 76.8 18.6 154 76-233 11-168 (225)
24 1fch_A Peroxisomal targeting s 99.1 5.9E-10 2E-14 92.6 9.9 220 5-233 107-351 (368)
25 1b89_A Protein (clathrin heavy 99.1 2.5E-10 8.7E-15 97.0 7.4 196 3-242 39-237 (449)
26 2gw1_A Mitochondrial precursor 99.0 6.7E-09 2.3E-13 90.0 15.5 211 5-233 246-470 (514)
27 2vq2_A PILW, putative fimbrial 99.0 3.9E-09 1.3E-13 81.1 12.5 171 75-247 44-219 (225)
28 3as5_A MAMA; tetratricopeptide 99.0 1.6E-08 5.3E-13 75.1 15.4 152 76-233 11-165 (186)
29 2pl2_A Hypothetical conserved 99.0 5.5E-09 1.9E-13 81.1 13.0 150 76-233 42-206 (217)
30 3mkr_A Coatomer subunit epsilo 99.0 1.8E-08 6E-13 82.0 15.8 217 9-253 12-244 (291)
31 2fo7_A Synthetic consensus TPR 99.0 5.2E-08 1.8E-12 68.2 15.6 118 112-233 7-124 (136)
32 2pl2_A Hypothetical conserved 99.0 5.1E-08 1.8E-12 75.5 16.4 169 76-253 8-195 (217)
33 3ieg_A DNAJ homolog subfamily 99.0 1.1E-08 3.7E-13 84.2 13.2 216 6-243 13-267 (359)
34 3ieg_A DNAJ homolog subfamily 98.9 1.4E-08 4.8E-13 83.5 13.0 217 5-233 46-293 (359)
35 1xnf_A Lipoprotein NLPI; TPR, 98.9 5E-09 1.7E-13 83.3 9.6 214 6-239 15-242 (275)
36 2q7f_A YRRB protein; TPR, prot 98.9 2.2E-08 7.6E-13 78.0 13.0 174 75-253 25-203 (243)
37 2fo7_A Synthetic consensus TPR 98.9 2.4E-07 8.4E-12 64.6 15.6 127 76-206 4-132 (136)
38 3fp2_A TPR repeat-containing p 98.8 8.3E-08 2.9E-12 83.7 15.7 211 6-233 253-483 (537)
39 3vtx_A MAMA; tetratricopeptide 98.8 5.6E-07 1.9E-11 67.2 18.3 161 75-239 7-168 (184)
40 2gw1_A Mitochondrial precursor 98.8 7E-09 2.4E-13 89.9 8.4 228 7-253 200-459 (514)
41 3uq3_A Heat shock protein STI1 98.8 1.9E-07 6.5E-12 73.1 15.3 120 112-233 85-228 (258)
42 3u4t_A TPR repeat-containing p 98.8 1.2E-07 4E-12 75.3 13.8 222 6-242 13-253 (272)
43 3as5_A MAMA; tetratricopeptide 98.7 8.3E-07 2.8E-11 65.6 15.9 128 75-206 44-173 (186)
44 1xnf_A Lipoprotein NLPI; TPR, 98.7 7.1E-07 2.4E-11 70.7 16.3 181 37-234 17-199 (275)
45 3uq3_A Heat shock protein STI1 98.7 8.5E-07 2.9E-11 69.3 16.1 152 81-233 13-194 (258)
46 3fp2_A TPR repeat-containing p 98.7 1.7E-07 5.8E-12 81.7 11.5 226 10-253 216-472 (537)
47 1ouv_A Conserved hypothetical 98.6 3.4E-06 1.2E-10 67.1 16.1 200 6-233 16-243 (273)
48 2ond_A Cleavage stimulation fa 98.6 6.3E-06 2.2E-10 67.1 17.6 180 50-242 84-273 (308)
49 2ond_A Cleavage stimulation fa 98.6 1.2E-06 4.2E-11 71.3 13.2 177 13-206 81-270 (308)
50 4gyw_A UDP-N-acetylglucosamine 98.5 5.5E-06 1.9E-10 75.5 17.9 150 75-233 11-166 (723)
51 4abn_A Tetratricopeptide repea 98.5 6.7E-07 2.3E-11 77.6 11.4 199 13-233 85-313 (474)
52 3edt_B KLC 2, kinesin light ch 98.5 1.6E-06 5.5E-11 68.6 12.7 160 75-235 45-275 (283)
53 3vtx_A MAMA; tetratricopeptide 98.5 3.9E-06 1.3E-10 62.5 13.5 129 75-206 41-170 (184)
54 3nf1_A KLC 1, kinesin light ch 98.5 1.9E-06 6.5E-11 69.3 12.4 159 75-234 71-300 (311)
55 3nf1_A KLC 1, kinesin light ch 98.5 2.1E-06 7.1E-11 69.0 12.5 158 75-233 29-216 (311)
56 1na0_A Designed protein CTPR3; 98.5 6.5E-06 2.2E-10 56.5 13.2 93 111-206 14-106 (125)
57 1ouv_A Conserved hypothetical 98.5 3.6E-05 1.2E-09 61.1 19.3 105 119-233 91-207 (273)
58 3u4t_A TPR repeat-containing p 98.5 3E-05 1E-09 61.1 18.6 151 80-233 10-163 (272)
59 4abn_A Tetratricopeptide repea 98.4 5.6E-06 1.9E-10 71.8 15.2 165 75-243 104-291 (474)
60 4i17_A Hypothetical protein; T 98.4 2.9E-05 1E-09 59.8 16.2 146 76-228 10-169 (228)
61 4gyw_A UDP-N-acetylglucosamine 98.3 1.6E-05 5.4E-10 72.5 15.0 136 112-253 15-155 (723)
62 2h6f_A Protein farnesyltransfe 98.3 2.3E-06 8E-11 72.2 8.3 198 6-226 107-323 (382)
63 2vsy_A XCC0866; transferase, g 98.3 2.5E-05 8.5E-10 69.1 15.0 118 112-233 29-149 (568)
64 3edt_B KLC 2, kinesin light ch 98.2 2.3E-06 7.8E-11 67.7 7.3 193 7-206 12-281 (283)
65 1qqe_A Vesicular transport pro 98.2 5.8E-05 2E-09 60.9 15.7 155 80-234 44-221 (292)
66 1hh8_A P67PHOX, NCF-2, neutrop 98.2 4E-05 1.4E-09 58.2 14.1 126 78-212 11-154 (213)
67 4gco_A Protein STI-1; structur 98.2 6.1E-05 2.1E-09 52.8 13.9 97 112-213 19-115 (126)
68 4ga2_A E3 SUMO-protein ligase 98.2 1.3E-05 4.6E-10 58.0 10.7 135 84-227 8-149 (150)
69 2h6f_A Protein farnesyltransfe 98.2 6.1E-05 2.1E-09 63.4 16.1 150 75-232 99-255 (382)
70 2vyi_A SGTA protein; chaperone 98.2 4.3E-05 1.5E-09 52.7 12.7 113 111-227 17-129 (131)
71 3urz_A Uncharacterized protein 98.2 4.1E-05 1.4E-09 58.5 13.4 159 80-249 11-196 (208)
72 4i17_A Hypothetical protein; T 98.2 8.8E-05 3E-09 57.1 15.3 123 112-239 13-144 (228)
73 3mv2_B Coatomer subunit epsilo 98.2 0.00015 5.2E-09 58.9 17.0 144 78-227 105-270 (310)
74 1hh8_A P67PHOX, NCF-2, neutrop 98.2 0.00034 1.2E-08 52.9 18.4 116 112-233 12-142 (213)
75 2kck_A TPR repeat; tetratricop 98.2 6.4E-05 2.2E-09 50.3 12.5 91 112-206 12-106 (112)
76 1a17_A Serine/threonine protei 98.2 3.2E-05 1.1E-09 56.0 11.6 118 112-233 19-138 (166)
77 1xi4_A Clathrin heavy chain; a 98.2 2.5E-05 8.5E-10 74.7 13.2 109 77-203 1138-1247(1630)
78 2r5s_A Uncharacterized protein 98.1 2.3E-05 7.9E-10 58.1 10.7 149 77-233 10-165 (176)
79 1a17_A Serine/threonine protei 98.1 0.00014 4.8E-09 52.5 14.6 126 75-204 15-144 (166)
80 1elr_A TPR2A-domain of HOP; HO 98.1 0.00012 3.9E-09 50.5 13.4 106 111-220 9-120 (131)
81 3qky_A Outer membrane assembly 98.1 0.00014 4.9E-09 57.2 15.5 166 75-243 17-228 (261)
82 1qqe_A Vesicular transport pro 98.1 0.00028 9.4E-09 56.8 16.8 161 75-237 79-265 (292)
83 2qfc_A PLCR protein; TPR, HTH, 98.1 0.00022 7.6E-09 57.3 16.0 155 77-231 79-255 (293)
84 1na0_A Designed protein CTPR3; 98.1 0.00031 1.1E-08 47.7 14.6 108 75-187 11-121 (125)
85 3gyz_A Chaperone protein IPGC; 98.1 7.8E-05 2.7E-09 54.2 11.8 91 112-206 42-133 (151)
86 3u3w_A Transcriptional activat 98.1 0.00024 8.1E-09 57.1 15.9 154 79-233 81-258 (293)
87 2lni_A Stress-induced-phosphop 98.1 7.5E-05 2.6E-09 51.8 11.3 92 112-206 22-113 (133)
88 2vsy_A XCC0866; transferase, g 98.1 0.00018 6.3E-09 63.5 16.2 143 50-207 9-158 (568)
89 3mv2_B Coatomer subunit epsilo 98.0 8.2E-05 2.8E-09 60.5 12.7 119 111-233 105-232 (310)
90 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.0008 2.7E-08 51.8 18.0 151 78-233 9-205 (225)
91 4gcn_A Protein STI-1; structur 98.0 8.1E-05 2.8E-09 52.2 11.2 102 112-217 14-121 (127)
92 2e2e_A Formate-dependent nitri 98.0 8.8E-05 3E-09 54.7 11.7 119 84-206 21-144 (177)
93 2e2e_A Formate-dependent nitri 98.0 5.2E-05 1.8E-09 56.0 10.1 125 116-244 20-149 (177)
94 2xcb_A PCRH, regulatory protei 98.0 0.00015 5.3E-09 51.6 12.2 92 112-206 24-115 (142)
95 1elw_A TPR1-domain of HOP; HOP 98.0 0.00054 1.8E-08 46.0 14.5 93 111-206 9-101 (118)
96 3upv_A Heat shock protein STI1 98.0 0.0002 6.8E-09 49.6 12.4 91 112-206 10-101 (126)
97 3u3w_A Transcriptional activat 98.0 8.7E-05 3E-09 59.8 11.6 122 112-233 81-217 (293)
98 2vyi_A SGTA protein; chaperone 98.0 0.00059 2E-08 46.7 14.5 116 75-193 14-130 (131)
99 2pzi_A Probable serine/threoni 98.0 0.00018 6E-09 65.3 14.7 147 84-237 402-559 (681)
100 3ulq_A Response regulator aspa 98.0 0.0003 1E-08 58.7 15.2 153 80-233 110-285 (383)
101 2ooe_A Cleavage stimulation fa 97.9 0.0014 4.7E-08 57.3 19.8 146 86-239 292-452 (530)
102 2vgx_A Chaperone SYCD; alterna 97.9 0.0002 6.9E-09 51.6 12.2 91 112-206 27-118 (148)
103 3qou_A Protein YBBN; thioredox 97.9 0.00012 4.1E-09 58.9 11.9 53 115-169 126-178 (287)
104 2ooe_A Cleavage stimulation fa 97.9 0.00049 1.7E-08 60.1 16.6 153 74-233 322-484 (530)
105 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00024 8.2E-09 51.8 12.4 92 112-206 17-108 (164)
106 3ro2_A PINS homolog, G-protein 97.9 5.1E-06 1.8E-10 67.1 3.5 220 6-233 15-284 (338)
107 3q49_B STIP1 homology and U bo 97.9 0.00031 1E-08 49.1 12.5 93 111-206 14-106 (137)
108 4ga2_A E3 SUMO-protein ligase 97.9 2.6E-05 9E-10 56.4 6.6 128 118-251 9-142 (150)
109 3sf4_A G-protein-signaling mod 97.9 8.1E-06 2.8E-10 68.1 3.9 220 6-233 19-288 (406)
110 1hxi_A PEX5, peroxisome target 97.9 0.0002 6.8E-09 49.7 10.5 92 111-206 22-114 (121)
111 3q15_A PSP28, response regulat 97.8 0.00068 2.3E-08 56.4 15.2 152 81-233 109-282 (378)
112 2vgx_A Chaperone SYCD; alterna 97.8 7.1E-05 2.4E-09 54.0 8.0 115 127-246 8-125 (148)
113 3gw4_A Uncharacterized protein 97.8 0.0001 3.4E-09 55.3 8.9 147 84-233 3-168 (203)
114 2lni_A Stress-induced-phosphop 97.8 0.0012 4.1E-08 45.4 14.0 113 74-191 17-132 (133)
115 2xev_A YBGF; tetratricopeptide 97.8 0.00045 1.5E-08 47.7 11.7 91 112-206 8-105 (129)
116 3qou_A Protein YBBN; thioredox 97.8 0.00062 2.1E-08 54.7 13.9 151 78-233 122-276 (287)
117 1p5q_A FKBP52, FK506-binding p 97.8 0.00039 1.3E-08 57.3 12.7 118 112-233 153-285 (336)
118 2xm6_A Protein corresponding t 97.8 0.0016 5.4E-08 56.3 17.1 137 86-233 272-424 (490)
119 1elr_A TPR2A-domain of HOP; HO 97.8 0.00019 6.5E-09 49.3 9.2 107 142-249 4-118 (131)
120 4gco_A Protein STI-1; structur 97.8 0.00075 2.6E-08 47.1 12.1 96 78-177 18-114 (126)
121 2ifu_A Gamma-SNAP; membrane fu 97.8 0.00049 1.7E-08 55.8 12.7 151 80-233 43-216 (307)
122 2dba_A Smooth muscle cell asso 97.7 0.0016 5.4E-08 45.8 14.0 86 115-205 37-127 (148)
123 3ulq_A Response regulator aspa 97.7 0.00074 2.5E-08 56.3 13.8 158 76-233 146-327 (383)
124 3qky_A Outer membrane assembly 97.7 0.00075 2.6E-08 53.0 13.1 128 111-242 20-180 (261)
125 2r5s_A Uncharacterized protein 97.7 0.00018 6.1E-09 53.2 8.8 127 75-204 42-171 (176)
126 2kck_A TPR repeat; tetratricop 97.7 0.00056 1.9E-08 45.5 10.7 95 141-236 5-101 (112)
127 2xm6_A Protein corresponding t 97.7 0.0023 7.8E-08 55.3 17.0 137 86-233 128-280 (490)
128 1xi4_A Clathrin heavy chain; a 97.7 0.001 3.5E-08 64.0 15.1 136 74-233 1106-1242(1630)
129 2pzi_A Probable serine/threoni 97.7 0.00034 1.2E-08 63.4 11.7 145 75-227 435-583 (681)
130 4a1s_A PINS, partner of inscut 97.6 0.0002 6.9E-09 60.0 9.1 155 78-233 53-244 (411)
131 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00068 2.3E-08 50.9 11.1 119 112-232 44-176 (198)
132 3sf4_A G-protein-signaling mod 97.6 0.00031 1.1E-08 58.4 9.8 221 5-233 56-328 (406)
133 1elw_A TPR1-domain of HOP; HOP 97.6 0.0056 1.9E-07 40.8 14.5 93 76-171 7-101 (118)
134 3k9i_A BH0479 protein; putativ 97.6 0.00014 4.6E-09 50.0 6.1 86 119-206 3-90 (117)
135 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0018 6.1E-08 51.9 13.6 121 111-233 80-217 (293)
136 1p5q_A FKBP52, FK506-binding p 97.6 0.0031 1.1E-07 51.9 14.9 126 75-204 149-292 (336)
137 4a1s_A PINS, partner of inscut 97.6 0.00023 7.9E-09 59.6 8.3 159 75-233 88-284 (411)
138 3ro2_A PINS homolog, G-protein 97.5 0.00051 1.7E-08 55.1 9.9 153 80-233 12-204 (338)
139 3rjv_A Putative SEL1 repeat pr 97.5 0.0071 2.4E-07 46.0 15.9 147 79-233 24-189 (212)
140 3q49_B STIP1 homology and U bo 97.5 0.0016 5.6E-08 45.3 11.4 93 139-233 6-98 (137)
141 2dba_A Smooth muscle cell asso 97.5 0.0017 5.7E-08 45.7 11.5 101 139-242 25-131 (148)
142 1wao_1 Serine/threonine protei 97.5 0.00045 1.5E-08 59.9 9.7 112 117-233 17-131 (477)
143 3q15_A PSP28, response regulat 97.5 0.007 2.4E-07 50.2 16.6 156 77-233 145-324 (378)
144 3rjv_A Putative SEL1 repeat pr 97.5 0.002 7E-08 49.1 12.3 149 97-253 9-172 (212)
145 3rkv_A Putative peptidylprolyl 97.5 0.0015 5.2E-08 47.2 11.1 93 113-206 18-126 (162)
146 3upv_A Heat shock protein STI1 97.5 0.0061 2.1E-07 41.8 13.8 93 77-171 8-101 (126)
147 4g1t_A Interferon-induced prot 97.5 0.00044 1.5E-08 59.1 9.1 47 123-171 317-363 (472)
148 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0038 1.3E-07 46.7 13.2 127 76-206 41-186 (198)
149 1hz4_A MALT regulatory protein 97.5 0.013 4.3E-07 48.4 17.5 218 7-233 25-274 (373)
150 3gyz_A Chaperone protein IPGC; 97.4 0.0028 9.6E-08 45.8 11.8 100 75-178 38-138 (151)
151 3sz7_A HSC70 cochaperone (SGT) 97.4 0.006 2.1E-07 44.1 13.5 95 75-171 13-108 (164)
152 3gw4_A Uncharacterized protein 97.4 0.00053 1.8E-08 51.2 7.9 115 117-233 3-128 (203)
153 2xcb_A PCRH, regulatory protei 97.4 0.0041 1.4E-07 43.9 12.2 92 78-171 23-115 (142)
154 2ifu_A Gamma-SNAP; membrane fu 97.4 0.0052 1.8E-07 49.6 14.2 154 75-233 78-253 (307)
155 3ro3_A PINS homolog, G-protein 97.4 0.004 1.4E-07 44.0 12.0 126 79-204 15-156 (164)
156 1hz4_A MALT regulatory protein 97.4 0.0075 2.6E-07 49.7 15.2 160 79-239 59-242 (373)
157 1kt0_A FKBP51, 51 kDa FK506-bi 97.4 0.0023 8E-08 55.0 12.4 118 112-233 274-406 (457)
158 2yhc_A BAMD, UPF0169 lipoprote 97.4 0.012 4E-07 45.1 15.2 130 75-208 43-215 (225)
159 1ihg_A Cyclophilin 40; ppiase 97.4 0.0013 4.4E-08 55.0 10.3 116 112-233 229-362 (370)
160 2c2l_A CHIP, carboxy terminus 97.4 0.0039 1.3E-07 49.8 12.7 91 78-170 9-100 (281)
161 3urz_A Uncharacterized protein 97.4 0.0081 2.8E-07 45.5 14.0 133 79-219 60-197 (208)
162 1wao_1 Serine/threonine protei 97.3 0.0022 7.5E-08 55.5 11.9 145 82-230 15-184 (477)
163 4g1t_A Interferon-induced prot 97.3 0.0064 2.2E-07 51.7 14.2 145 85-233 225-393 (472)
164 4gcn_A Protein STI-1; structur 97.3 0.0019 6.6E-08 44.9 8.8 103 143-247 9-120 (127)
165 2l6j_A TPR repeat-containing p 97.3 0.00041 1.4E-08 46.4 5.1 57 112-170 10-66 (111)
166 3ro3_A PINS homolog, G-protein 97.2 0.00061 2.1E-08 48.4 6.2 122 112-233 15-150 (164)
167 1hxi_A PEX5, peroxisome target 97.2 0.0051 1.7E-07 42.3 10.6 93 76-170 20-113 (121)
168 4f3v_A ESX-1 secretion system 97.2 0.0033 1.1E-07 50.4 10.7 134 78-218 107-247 (282)
169 2xev_A YBGF; tetratricopeptide 97.2 0.023 7.7E-07 38.7 14.4 96 79-178 8-110 (129)
170 2kat_A Uncharacterized protein 97.1 0.0074 2.5E-07 40.7 10.7 80 124-206 3-82 (115)
171 3k9i_A BH0479 protein; putativ 97.1 0.002 6.7E-08 44.0 7.6 100 86-188 3-108 (117)
172 4e6h_A MRNA 3'-END-processing 97.1 0.0087 3E-07 54.1 13.2 174 77-253 382-584 (679)
173 3rkv_A Putative peptidylprolyl 97.0 0.022 7.5E-07 40.9 12.8 98 77-178 15-131 (162)
174 1kt0_A FKBP51, 51 kDa FK506-bi 96.9 0.02 7E-07 49.1 13.8 126 76-205 271-414 (457)
175 2l6j_A TPR repeat-containing p 96.9 0.0029 9.8E-08 42.1 6.5 66 140-206 2-67 (111)
176 2hr2_A Hypothetical protein; a 96.8 0.023 7.9E-07 41.3 11.3 106 112-217 17-147 (159)
177 1ihg_A Cyclophilin 40; ppiase 96.8 0.021 7.3E-07 47.5 12.8 118 76-197 226-361 (370)
178 4f3v_A ESX-1 secretion system 96.8 0.0098 3.3E-07 47.6 9.9 126 111-242 107-240 (282)
179 4b4t_Q 26S proteasome regulato 96.8 0.023 8E-07 47.6 12.6 154 80-233 11-196 (434)
180 3n71_A Histone lysine methyltr 96.7 0.028 9.5E-07 48.8 12.9 92 113-204 316-420 (490)
181 1na3_A Designed protein CTPR2; 96.7 0.036 1.2E-06 35.0 10.6 55 114-170 17-71 (91)
182 2c2l_A CHIP, carboxy terminus 96.6 0.043 1.5E-06 43.6 12.5 90 112-205 10-100 (281)
183 3e4b_A ALGK; tetratricopeptide 96.6 0.027 9.2E-07 48.2 11.9 90 112-207 182-281 (452)
184 1na3_A Designed protein CTPR2; 96.6 0.021 7.1E-07 36.2 8.6 80 141-222 8-87 (91)
185 1klx_A Cysteine rich protein B 96.5 0.11 3.8E-06 36.4 13.7 112 87-208 9-128 (138)
186 3qww_A SET and MYND domain-con 96.5 0.013 4.3E-07 50.1 9.4 87 119-205 311-410 (433)
187 4e6h_A MRNA 3'-END-processing 96.5 0.053 1.8E-06 49.0 13.7 146 75-226 436-588 (679)
188 3e4b_A ALGK; tetratricopeptide 96.5 0.016 5.3E-07 49.7 9.7 90 144-238 178-277 (452)
189 3n71_A Histone lysine methyltr 96.5 0.018 6.1E-07 50.0 10.0 81 153-233 320-414 (490)
190 4b4t_Q 26S proteasome regulato 96.4 0.12 4.1E-06 43.2 15.0 157 76-233 58-237 (434)
191 3qwp_A SET and MYND domain-con 96.4 0.033 1.1E-06 47.5 11.3 94 112-205 293-399 (429)
192 2kc7_A BFR218_protein; tetratr 96.4 0.016 5.3E-07 37.7 7.3 57 113-171 7-64 (99)
193 2kat_A Uncharacterized protein 96.4 0.033 1.1E-06 37.3 9.1 58 111-170 24-81 (115)
194 3ma5_A Tetratricopeptide repea 96.3 0.032 1.1E-06 36.6 8.7 60 142-203 7-67 (100)
195 3ma5_A Tetratricopeptide repea 96.3 0.02 6.9E-07 37.7 7.5 58 111-170 12-69 (100)
196 1zu2_A Mitochondrial import re 96.3 0.019 6.4E-07 41.7 7.6 99 118-222 14-134 (158)
197 2if4_A ATFKBP42; FKBP-like, al 96.3 0.026 9E-07 46.3 9.6 52 116-169 240-291 (338)
198 1klx_A Cysteine rich protein B 96.3 0.1 3.5E-06 36.6 11.6 103 119-233 8-118 (138)
199 2if4_A ATFKBP42; FKBP-like, al 96.0 0.018 6.3E-07 47.2 7.3 61 144-206 232-293 (338)
200 2hr2_A Hypothetical protein; a 95.7 0.32 1.1E-05 35.2 11.9 109 76-184 14-149 (159)
201 3dra_A Protein farnesyltransfe 95.6 0.17 5.7E-06 41.0 11.5 211 9-233 46-279 (306)
202 3qww_A SET and MYND domain-con 95.4 0.057 1.9E-06 46.0 8.4 80 154-233 310-403 (433)
203 3qwp_A SET and MYND domain-con 95.3 0.088 3E-06 44.8 9.2 85 149-233 294-392 (429)
204 1pc2_A Mitochondria fission pr 95.1 0.21 7.3E-06 35.8 9.1 81 123-206 15-100 (152)
205 3ly7_A Transcriptional activat 94.6 0.28 9.6E-06 40.7 9.9 123 121-247 214-347 (372)
206 3dra_A Protein farnesyltransfe 94.5 1.4 4.7E-05 35.6 13.9 154 75-233 69-241 (306)
207 3mkq_A Coatomer beta'-subunit; 94.4 0.6 2E-05 42.4 12.9 104 114-233 660-770 (814)
208 1zu2_A Mitochondrial import re 94.3 0.14 4.9E-06 37.0 6.7 113 84-206 13-147 (158)
209 2kc7_A BFR218_protein; tetratr 94.2 0.61 2.1E-05 29.7 9.3 57 149-207 7-65 (99)
210 3u64_A Protein TP_0956; tetrat 93.3 0.86 2.9E-05 36.5 10.1 94 121-219 178-284 (301)
211 3ly7_A Transcriptional activat 93.1 0.59 2E-05 38.8 9.3 76 139-218 274-349 (372)
212 2v5f_A Prolyl 4-hydroxylase su 93.1 0.63 2.2E-05 30.6 8.0 61 110-170 9-74 (104)
213 2p58_C Putative type III secre 92.9 0.71 2.4E-05 30.4 7.4 87 120-216 21-107 (116)
214 1wy6_A Hypothetical protein ST 92.9 1.7 6E-05 30.6 10.1 69 140-209 89-157 (172)
215 2ff4_A Probable regulatory pro 92.5 0.63 2.2E-05 38.9 8.9 54 114-169 179-232 (388)
216 2uy1_A Cleavage stimulation fa 92.5 2.8 9.7E-05 36.1 13.3 121 76-205 289-412 (493)
217 2ff4_A Probable regulatory pro 92.5 0.61 2.1E-05 39.0 8.8 78 146-225 175-258 (388)
218 2v5f_A Prolyl 4-hydroxylase su 92.5 1.1 3.9E-05 29.3 8.6 72 140-213 3-80 (104)
219 2uwj_G Type III export protein 92.3 0.66 2.3E-05 30.5 6.7 87 120-216 20-106 (115)
220 1wy6_A Hypothetical protein ST 92.1 1 3.6E-05 31.7 7.9 62 111-174 96-157 (172)
221 1pc2_A Mitochondria fission pr 91.7 1.3 4.6E-05 31.6 8.5 62 111-176 37-103 (152)
222 2uy1_A Cleavage stimulation fa 91.0 2.7 9.2E-05 36.2 11.4 111 112-233 292-405 (493)
223 3mkq_B Coatomer subunit alpha; 91.0 3.6 0.00012 30.2 12.8 76 111-202 39-114 (177)
224 1v54_E Cytochrome C oxidase po 90.3 2 7E-05 28.3 7.5 50 121-171 25-74 (109)
225 1v54_E Cytochrome C oxidase po 89.8 2.6 8.8E-05 27.9 7.7 64 157-221 25-88 (109)
226 3bee_A Putative YFRE protein; 89.7 2.8 9.4E-05 27.0 9.2 65 140-206 4-72 (93)
227 1nzn_A CGI-135 protein, fissio 89.3 3.3 0.00011 28.5 8.5 83 121-206 16-103 (126)
228 3bee_A Putative YFRE protein; 88.8 3.3 0.00011 26.6 9.3 48 122-171 25-72 (93)
229 3dss_A Geranylgeranyl transfer 88.4 9 0.00031 31.1 12.7 119 121-243 125-271 (331)
230 1dce_A Protein (RAB geranylger 87.4 10 0.00035 33.3 12.6 97 122-222 89-188 (567)
231 1dce_A Protein (RAB geranylger 87.4 14 0.00049 32.3 16.5 64 121-187 124-188 (567)
232 2y69_E Cytochrome C oxidase su 85.6 5.5 0.00019 27.8 7.7 71 113-185 59-130 (152)
233 3mkq_A Coatomer beta'-subunit; 85.1 8.6 0.00029 34.7 11.3 103 111-229 686-800 (814)
234 2y69_E Cytochrome C oxidase su 84.1 8.7 0.0003 26.9 8.4 45 160-204 71-115 (152)
235 3u64_A Protein TP_0956; tetrat 83.9 9.7 0.00033 30.4 9.6 95 140-236 152-264 (301)
236 1zbp_A Hypothetical protein VP 83.7 3.4 0.00012 32.5 6.8 116 80-205 4-128 (273)
237 3q7a_A Farnesyltransferase alp 83.6 17 0.00058 29.8 11.6 85 119-206 101-196 (349)
238 1nzn_A CGI-135 protein, fissio 81.2 10 0.00035 26.0 7.8 62 111-176 40-106 (126)
239 2nsz_A Programmed cell death p 78.9 13 0.00045 25.5 8.0 64 111-176 12-77 (129)
240 4gns_B Protein CSD3, chitin bi 78.5 23 0.00078 32.3 11.2 119 111-233 253-392 (754)
241 2fe3_A Peroxide operon regulat 75.3 9.9 0.00034 26.6 6.6 61 96-157 9-71 (145)
242 2xig_A Ferric uptake regulatio 75.1 11 0.00036 26.7 6.7 64 93-157 11-76 (150)
243 2ion_A PDCD4, programmed cell 74.0 12 0.00039 26.7 6.6 64 111-176 14-79 (152)
244 1zbp_A Hypothetical protein VP 73.2 9.2 0.00032 30.1 6.3 113 113-233 4-121 (273)
245 2nsz_A Programmed cell death p 72.9 17 0.00057 24.9 7.1 70 144-214 9-80 (129)
246 4ets_A Ferric uptake regulatio 72.7 9.9 0.00034 27.3 6.1 69 89-158 13-85 (162)
247 4h7y_A Dual specificity protei 69.0 16 0.00054 26.1 6.1 63 156-220 74-136 (161)
248 1k1a_A B-cell lymphoma 3-encod 66.0 25 0.00085 26.0 7.5 84 80-169 13-103 (241)
249 2fu4_A Ferric uptake regulatio 65.9 15 0.00051 22.6 5.2 63 166-229 6-69 (83)
250 3dss_A Geranylgeranyl transfer 65.5 53 0.0018 26.6 16.2 132 80-218 36-185 (331)
251 2ion_A PDCD4, programmed cell 63.1 18 0.00062 25.6 5.7 70 144-214 11-82 (152)
252 3eyy_A Putative iron uptake re 62.4 20 0.0007 25.0 5.9 58 98-157 8-67 (145)
253 3mkq_B Coatomer subunit alpha; 60.0 47 0.0016 24.2 11.1 47 116-169 15-61 (177)
254 1mzb_A Ferric uptake regulatio 59.4 22 0.00074 24.5 5.6 58 99-157 8-68 (136)
255 2fe3_A Peroxide operon regulat 59.1 42 0.0014 23.3 7.3 63 166-229 11-73 (145)
256 4a1g_A Mitotic checkpoint seri 58.2 39 0.0013 23.9 6.7 51 125-175 84-134 (152)
257 2xig_A Ferric uptake regulatio 56.6 33 0.0011 24.0 6.2 63 166-229 16-78 (150)
258 4fhn_B Nucleoporin NUP120; pro 56.5 1.4E+02 0.0048 28.6 12.4 120 112-233 848-992 (1139)
259 2fu4_A Ferric uptake regulatio 55.0 32 0.0011 20.9 5.4 56 100-156 8-66 (83)
260 2w57_A Ferric uptake regulatio 55.0 25 0.00087 24.6 5.4 60 98-158 6-68 (150)
261 2d2s_A Exocyst complex compone 54.7 69 0.0024 24.4 10.7 26 175-200 89-114 (235)
262 3eiq_C Programmed cell death p 54.2 52 0.0018 27.0 7.7 67 111-179 222-290 (358)
263 3q7a_A Farnesyltransferase alp 53.6 90 0.0031 25.4 18.5 81 123-206 71-154 (349)
264 2dod_A Transcription elongatio 53.3 18 0.00062 22.7 3.8 34 193-227 16-50 (82)
265 3esl_A Checkpoint serine/threo 53.2 68 0.0023 23.9 7.7 57 120-176 93-149 (202)
266 3eiq_C Programmed cell death p 52.6 36 0.0012 27.9 6.5 78 143-221 218-297 (358)
267 3eyy_A Putative iron uptake re 51.9 35 0.0012 23.7 5.6 60 167-228 9-68 (145)
268 1mzb_A Ferric uptake regulatio 51.7 38 0.0013 23.2 5.8 59 168-227 9-68 (136)
269 3ffl_A Anaphase-promoting comp 51.7 40 0.0014 24.3 5.9 60 111-170 25-91 (167)
270 4gns_B Protein CSD3, chitin bi 51.5 42 0.0014 30.7 7.3 52 116-169 347-398 (754)
271 4h7y_A Dual specificity protei 51.1 42 0.0014 23.9 5.7 67 118-187 72-138 (161)
272 1bh9_B TAFII28; histone fold, 50.9 25 0.00087 22.4 4.2 60 80-139 9-71 (89)
273 1wwp_A Hypothetical protein TT 50.6 53 0.0018 21.9 7.4 77 122-204 2-81 (119)
274 2yru_A Steroid receptor RNA ac 49.8 32 0.0011 23.2 4.9 49 87-135 39-90 (118)
275 2b7e_A PRE-mRNA processing pro 49.3 10 0.00035 22.1 2.0 32 194-226 3-36 (59)
276 2rg8_A Programmed cell death p 49.3 18 0.00062 26.0 3.8 27 144-170 12-38 (165)
277 1oai_A Nuclear RNA export fact 49.0 10 0.00036 22.1 2.0 22 120-141 34-55 (59)
278 2w57_A Ferric uptake regulatio 48.8 44 0.0015 23.4 5.8 63 166-229 6-69 (150)
279 3ygs_P Procaspase 9; apoptosis 48.6 51 0.0017 21.1 5.6 40 120-164 51-90 (97)
280 2o03_A Probable zinc uptake re 48.6 37 0.0013 23.0 5.3 48 182-229 15-62 (131)
281 2keb_A DNA polymerase subunit 48.1 54 0.0018 21.3 6.4 29 163-191 30-58 (101)
282 1jog_A Hypothetical protein HI 47.5 53 0.0018 23.0 6.0 56 146-204 44-103 (146)
283 3txn_A 26S proteasome regulato 47.4 81 0.0028 26.2 8.0 91 111-203 104-207 (394)
284 4ets_A Ferric uptake regulatio 46.6 51 0.0017 23.4 5.9 70 159-229 14-86 (162)
285 3o48_A Mitochondria fission 1 46.5 70 0.0024 22.1 6.9 62 112-176 46-110 (134)
286 2zu6_B Programmed cell death p 45.1 57 0.002 26.1 6.5 65 111-177 171-237 (307)
287 3hgl_A Effector protein hopab2 44.8 53 0.0018 20.3 5.0 69 104-185 4-73 (85)
288 2wvi_A Mitotic checkpoint seri 44.7 84 0.0029 22.5 7.3 53 124-176 78-130 (164)
289 4a1g_A Mitotic checkpoint seri 42.4 88 0.003 22.1 6.4 71 138-211 64-135 (152)
290 1v3f_A Pleckstrin 2; three-hel 42.2 44 0.0015 22.5 4.7 48 161-208 8-71 (120)
291 3bu8_A Telomeric repeat-bindin 42.1 83 0.0028 23.8 6.4 49 122-171 88-143 (235)
292 1uhw_A Pleckstrin; three-helix 42.0 30 0.001 23.0 3.7 48 161-208 8-71 (109)
293 4b4t_R RPN7, 26S proteasome re 41.8 1.5E+02 0.0052 24.7 11.3 93 111-205 136-236 (429)
294 2uwj_G Type III export protein 41.2 75 0.0025 20.9 6.1 85 86-180 19-105 (115)
295 3mwm_A ZUR, putative metal upt 40.8 23 0.0008 24.5 3.2 56 101-157 6-63 (139)
296 2p58_C Putative type III secre 40.7 76 0.0026 20.9 7.0 85 86-180 20-106 (116)
297 3lvg_A Clathrin heavy chain 1; 40.4 0.28 9.7E-06 42.3 -7.9 139 78-231 59-218 (624)
298 3mwm_A ZUR, putative metal upt 40.2 32 0.0011 23.7 3.9 46 183-228 19-64 (139)
299 2wvi_A Mitotic checkpoint seri 40.1 1E+02 0.0034 22.1 6.5 73 138-213 59-132 (164)
300 1k1a_A B-cell lymphoma 3-encod 40.0 58 0.002 23.9 5.7 88 111-203 11-102 (241)
301 1ug3_A EIF4GI, eukaryotic prot 39.9 23 0.0008 28.7 3.5 88 111-204 16-112 (339)
302 1fsh_A Dishevelled-1; three-he 39.1 79 0.0027 20.6 5.5 49 160-208 20-85 (105)
303 3lvg_A Clathrin heavy chain 1; 38.8 6.1 0.00021 34.3 -0.2 48 76-124 86-134 (624)
304 2yru_A Steroid receptor RNA ac 37.7 78 0.0027 21.3 5.3 40 165-204 49-88 (118)
305 3twr_A Tankyrase-2; ankyrin re 37.2 56 0.0019 22.4 4.9 15 111-125 44-58 (165)
306 2o03_A Probable zinc uptake re 37.1 23 0.00077 24.2 2.6 46 111-157 15-60 (131)
307 4b4t_P 26S proteasome regulato 37.0 1.9E+02 0.0064 24.3 10.1 92 112-204 143-245 (445)
308 3e3v_A Regulatory protein RECX 36.1 1.2E+02 0.0041 21.8 9.7 49 87-136 46-97 (177)
309 2zu6_B Programmed cell death p 35.8 70 0.0024 25.5 5.7 70 144-214 168-239 (307)
310 3o48_A Mitochondria fission 1 35.0 1.1E+02 0.0038 21.1 9.7 68 139-206 37-107 (134)
311 2keb_A DNA polymerase subunit 35.0 93 0.0032 20.2 6.8 56 125-183 28-88 (101)
312 4aez_C MAD3, mitotic spindle c 34.7 1.5E+02 0.0051 22.5 8.0 51 160-210 132-183 (223)
313 3l6a_A Eukaryotic translation 34.6 1.1E+02 0.0037 25.1 6.7 59 110-173 16-79 (364)
314 1wgl_A TOLL-interacting protei 34.4 55 0.0019 18.9 3.6 22 190-211 36-57 (59)
315 3tjy_A Effector protein hopab3 33.3 90 0.0031 19.5 4.9 47 106-152 4-51 (94)
316 3t8k_A Uncharacterized protein 33.2 1.3E+02 0.0045 21.4 6.9 68 111-179 40-111 (186)
317 4fhn_B Nucleoporin NUP120; pro 32.0 1.5E+02 0.005 28.5 8.1 120 112-233 905-1041(1139)
318 3pvs_A Replication-associated 32.0 2.3E+02 0.0078 23.8 9.3 45 183-227 258-305 (447)
319 2rg8_A Programmed cell death p 31.4 53 0.0018 23.5 3.9 71 110-187 14-85 (165)
320 3rjo_A Endoplasmic reticulum a 31.2 2.2E+02 0.0077 23.5 16.4 141 78-226 202-354 (419)
321 2ijq_A Hypothetical protein; s 30.7 1.5E+02 0.005 21.2 8.0 59 146-205 37-103 (161)
322 3f3f_C Nucleoporin NUP85; stru 30.5 1.2E+02 0.004 26.7 6.4 46 112-160 522-567 (570)
323 2d2s_A Exocyst complex compone 30.2 1.8E+02 0.0061 22.1 7.3 25 209-233 88-112 (235)
324 3esl_A Checkpoint serine/threo 30.0 1.7E+02 0.0058 21.7 9.5 74 138-211 73-149 (202)
325 4fke_A Aminopeptidase N; zinc 29.9 3.4E+02 0.012 25.2 15.9 147 79-232 692-851 (909)
326 1wty_A Hypothetical protein TT 29.0 1.3E+02 0.0043 19.9 8.1 75 122-204 4-79 (119)
327 4fke_A Aminopeptidase N; zinc 28.6 3.6E+02 0.012 25.1 13.8 108 112-226 692-806 (909)
328 4aez_C MAD3, mitotic spindle c 28.0 89 0.0031 23.7 4.7 54 122-175 130-183 (223)
329 3ffl_A Anaphase-promoting comp 27.9 1.7E+02 0.0058 21.0 9.0 54 80-134 27-91 (167)
330 2cuj_A Transcriptional adaptor 27.7 1.3E+02 0.0046 19.8 5.3 20 121-140 88-107 (108)
331 3ph0_C ASCG; type III secretio 27.1 95 0.0032 17.9 4.0 38 122-161 22-59 (61)
332 3aji_A 26S proteasome non-ATPa 27.0 1.5E+02 0.005 21.4 6.0 146 80-242 10-166 (231)
333 1wdy_A 2-5A-dependent ribonucl 26.7 1E+02 0.0036 23.0 5.3 122 99-229 90-233 (285)
334 3eu9_A Huntingtin-interacting 26.7 1.1E+02 0.0038 22.1 5.3 19 111-129 44-62 (240)
335 4b4t_R RPN7, 26S proteasome re 26.4 2.8E+02 0.0095 23.0 10.2 93 78-171 136-237 (429)
336 3eu9_A Huntingtin-interacting 25.9 1.1E+02 0.0036 22.3 5.0 10 127-136 56-65 (240)
337 2f6m_A Suppressor protein STP2 25.8 88 0.003 18.6 3.4 44 145-189 5-48 (65)
338 1uzc_A Hypothetical protein FL 25.6 56 0.0019 19.7 2.7 35 193-228 14-49 (71)
339 2cos_A Serine/threonine protei 24.9 86 0.0029 17.8 3.1 11 193-203 38-48 (54)
340 2aqe_A Transcriptional adaptor 24.6 1.4E+02 0.0047 18.9 4.6 20 121-140 70-89 (90)
341 3hra_A Ankyrin repeat family p 24.3 1.1E+02 0.0036 21.6 4.7 99 111-212 74-173 (201)
342 4g8k_A 2-5A-dependent ribonucl 24.3 1.5E+02 0.0052 23.1 5.9 105 126-243 219-329 (337)
343 1ug3_A EIF4GI, eukaryotic prot 23.1 41 0.0014 27.2 2.2 63 145-208 14-77 (339)
344 1y8m_A FIS1; mitochondria, unk 23.0 2E+02 0.0067 20.1 11.1 62 112-176 45-109 (144)
345 3txn_A 26S proteasome regulato 22.1 3.4E+02 0.011 22.5 12.4 157 76-234 22-203 (394)
346 3l6a_A Eukaryotic translation 21.4 3.3E+02 0.011 22.1 8.6 73 75-149 14-90 (364)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.1e-36 Score=263.06 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=169.1
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCC---------HHHHHHHHHHHHhcCCCCCCH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEE---------TILAVKIFDIIRKQDWYQPDA 142 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~p~~ 142 (256)
.+...|.+||+.|+.++|+ .++++|.+.|++||.. +||.+|++.+. +++|.++|++|.+.| +.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~-~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G-~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEAL-RLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDK-VVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHH-HHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTT-CCCCH
T ss_pred HHHHHHHHHHhCCCHHHHH-HHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhC-CCCCH
Confidence 3556799999999999998 6778999999999987 59999987654 799999999999999 99999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
+|||+||.+|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHH----hhhhhcCCCcccccchhHhhcc
Q 025226 223 LPHPLLRSKVK----KDFEELFPEKHAYDPPEEIFGK 255 (256)
Q Consensus 223 ~~~g~~~~a~~----~~~~~~~p~~~~~~~li~~y~~ 255 (256)
++.|++++|.+ |...+..|+..||+++++.|.+
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999988 8889999999999999998864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=9.4e-35 Score=254.45 Aligned_cols=198 Identities=8% Similarity=0.080 Sum_probs=169.2
Q ss_pred hHHHHHHHHHhcCCC-------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhc
Q 025226 13 ILASIVLQNLTKNPS-------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKR 85 (256)
Q Consensus 13 ~~A~~l~~~m~~~~~-------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 85 (256)
..+..+.+.+++.++ ++.+|.+|++.|++..+ +++|++|...+..|+..+|+. +|.+|++
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A-----~~lf~~M~~~Gv~pd~~tyn~--------Li~~c~~ 73 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEA-----LRLYDEARRNGVQLSQYHYNV--------LLYVCSL 73 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHH-----HHHHHHHHHHTCCCCHHHHHH--------HHHHHTT
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHH-----HHHHHHHHHcCCCCCHhHHHH--------HHHHHHh
Confidence 345566677766554 78889999999999999 999999999998886555554 4788887
Q ss_pred CCC---------cHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 86 FKD---------DEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 86 ~~~---------~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+. .++|. .++++|...|+.||.. +||++|++.|++++|+++|++|.+.| +.||..|||++|.+|+
T Consensus 74 ~~~~~~~~~~~~l~~A~-~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~tyn~lI~~~~ 151 (501)
T 4g26_A 74 AEAATESSPNPGLSRGF-DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSYGPALFGFC 151 (501)
T ss_dssp CCCCSSSSCCHHHHHHH-HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHH
T ss_pred CCchhhhhhcchHHHHH-HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccceehHHHHHHH
Confidence 665 46676 6778999999999987 59999999999999999999999999 9999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
+.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|++.|+.|+..||++++..|+..
T Consensus 152 ~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 152 RKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999874
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=208.57 Aligned_cols=142 Identities=15% Similarity=0.148 Sum_probs=125.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRK---QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~---~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
++|++||+.|++++|.++|++|.+ .| +.||++|||+||++||+.|++++|.++|++|.+.|+.||++|||+||.+|
T Consensus 132 aLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 799999999999999999988764 57 89999999999999999999999999999999999999999999999999
Q ss_pred HHcCCh-hHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhhcCCC------cccccchhHhhc
Q 025226 188 LKDGSP-ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEELFPE------KHAYDPPEEIFG 254 (256)
Q Consensus 188 ~~~g~~-~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~p~------~~~~~~li~~y~ 254 (256)
|+.|+. ++|.++|++|.+.|+.||..||++++.++.+.+-++ +++....++.|+ ..|...|.+.|.
T Consensus 211 cK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~-~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK-AVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH-HHGGGCCCCCCCCCCCCCCCCCTTTHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH-HHHHhCcccCCCCCCcccccchHHHHHHHc
Confidence 999985 789999999999999999999999999888876554 444446666665 556666777665
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.90 E-value=2.6e-24 Score=195.80 Aligned_cols=118 Identities=9% Similarity=0.006 Sum_probs=107.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhH
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRK---EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP 214 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t 214 (256)
+.--..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567999999999999999999999988874 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCh-HHHHH----hhhhhcCCCcccccchhHhhcc
Q 025226 215 FRILLKGLLPHPLL-RSKVK----KDFEELFPEKHAYDPPEEIFGK 255 (256)
Q Consensus 215 ~~~li~~~~~~g~~-~~a~~----~~~~~~~p~~~~~~~li~~y~~ 255 (256)
||+||++||+.|+. ++|.+ |..+|+.||.++|+++++.+++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999999975 55544 9999999999999999887653
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.79 E-value=8e-19 Score=156.10 Aligned_cols=242 Identities=10% Similarity=-0.072 Sum_probs=158.3
Q ss_pred cccccccCCchHHHHHHHHHhcCC--C--ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccc---------
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNP--S--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGK--------- 69 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~--~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~--------- 69 (256)
+..|.+.|+.+.|.++|+.+.+.+ . |+.+...+.+.++.+.+ +..|+++....+.. ...+.
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV-----LAITTKILEIDPYN-LDVYPLHLASLHES 352 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCTTC-CTTHHHHHHHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHcCccc-HHHHHHHHHHHHHh
Confidence 556777777777777777765422 1 66667777777776666 77776665433211 11000
Q ss_pred -----------------cccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccC-CCcH-HHHHHHHHHcCCHHHHHHHHH
Q 025226 70 -----------------KLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLL-KMDI-VAVLIELERQEETILAVKIFD 130 (256)
Q Consensus 70 -----------------~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~-~~li~~~~~~~~~~~a~~~~~ 130 (256)
.-....+..+...|.+.|+.++|.. +++.+.+... .+.. ..++.+|.+.|++++|.++|+
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARR-YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0012344555677788888888874 3344443221 1111 257777888888888888888
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----
Q 025226 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS---- 206 (256)
Q Consensus 131 ~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~---- 206 (256)
++.+.+ ..+..+|+.+..+|.+.|++++|.++|+++.+.. ..+..+|+.++..|.+.|++++|.++|++|.+.
T Consensus 432 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 887765 5577788888888888888888888888877642 235777888888888888888888888887765
Q ss_pred CCCCC--hhHHHHHHHHhcCCCChHHHHHhh--hhhcCC-CcccccchhHhhc
Q 025226 207 PDPPE--ELPFRILLKGLLPHPLLRSKVKKD--FEELFP-EKHAYDPPEEIFG 254 (256)
Q Consensus 207 g~~p~--~~t~~~li~~~~~~g~~~~a~~~~--~~~~~p-~~~~~~~li~~y~ 254 (256)
+..|+ ..+|..+..+|.+.|++++|.+.. .....| +..+|..+..+|.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 66777 678888888888888888887722 222334 4567777766664
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.76 E-value=5.5e-18 Score=150.67 Aligned_cols=230 Identities=9% Similarity=-0.021 Sum_probs=172.5
Q ss_pred cccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHH
Q 025226 7 SRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVIL 81 (256)
Q Consensus 7 ~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (256)
.+.|+.+.|.++++.+.+... |+.+...+.+.++.+.+ +..|+++....+.. ...|..++.
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~~~~~---------~~~~~~l~~ 415 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA-----RRYFSKSSTMDPQF---------GPAWIGFAH 415 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCTTC---------HHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHhCCCC---------HHHHHHHHH
Confidence 344444444444444432111 55555566666666666 66666655432211 346677889
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccC-CCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLL-KMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~ 159 (256)
.|.+.|+.++|+. +++.+...+. .+... .+..+|.+.|++++|.++|+++.+.. ..+..+|+.+...|.+.|+++
T Consensus 416 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 492 (597)
T 2xpi_A 416 SFAIEGEHDQAIS-AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQ 492 (597)
T ss_dssp HHHHHTCHHHHHH-HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHH-HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHH
Confidence 9999999999985 4456654432 12222 58999999999999999999999886 668999999999999999999
Q ss_pred HHHHHHHHHHhC----CCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 160 EAMQVWESMRKE----DLFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 160 ~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+|.++|+++.+. +..|+ ..+|+.+...|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++++|.+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999875 77888 7899999999999999999999999998775 3478999999999999999999998
Q ss_pred --hhhhhcCCC-cccccchhHhhc
Q 025226 234 --KDFEELFPE-KHAYDPPEEIFG 254 (256)
Q Consensus 234 --~~~~~~~p~-~~~~~~li~~y~ 254 (256)
.....+.|+ ...|..+..+|.
T Consensus 572 ~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 572 HLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCChHHHHHHHHHHh
Confidence 333455665 445666666554
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=8.9e-13 Score=111.12 Aligned_cols=154 Identities=13% Similarity=0.078 Sum_probs=113.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
+..+-..+...|+.++|+..+.+......-.+... .+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Confidence 33444556667777777644432222211111111 47778888899999999999888775 4567788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.|++++|.+.|+++.+.. +.+..+|+.+...|.+.|++++|.+.|+++.+.. +.+..++..+...|.+.|++++|.+
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999888742 3467888899999999999999999999887652 3356788889999999999999888
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=3.1e-12 Score=107.74 Aligned_cols=238 Identities=12% Similarity=0.027 Sum_probs=153.7
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccc-----------
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRG----------- 68 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~----------- 68 (256)
+|.+.|+.+.|.+.|+.+.+... |..+...+...++...+ +..|+++....+.......
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA-----VQAYVSALQYNPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHH-----HHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCCCcHHHHHHHHHHHHHccC
Confidence 35566677777777776543211 44455555555555555 5555555433221100000
Q ss_pred --------------ccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHH
Q 025226 69 --------------KKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFD 130 (256)
Q Consensus 69 --------------~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~ 130 (256)
..-....+..+...+.+.|+.++|+..+ +...+. .|+.. .+-..+...|++++|...|+
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHF-EKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH-HHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0000123334445566666676666433 333332 23221 35556666777777777777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 025226 131 IIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209 (256)
Q Consensus 131 ~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 209 (256)
+..+.. +-+..+|..+...|.+.|++++|.+.|+++.+. .| +..+|+.+...|.+.|++++|.+.|+++.+. .+
T Consensus 228 ~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p 302 (388)
T 1w3b_A 228 RALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CP 302 (388)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CT
T ss_pred HHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Cc
Confidence 776664 446889999999999999999999999999885 34 4678999999999999999999999999876 24
Q ss_pred CChhHHHHHHHHhcCCCChHHHHHhhh--hhcCCC-cccccchhHhhcc
Q 025226 210 PEELPFRILLKGLLPHPLLRSKVKKDF--EELFPE-KHAYDPPEEIFGK 255 (256)
Q Consensus 210 p~~~t~~~li~~~~~~g~~~~a~~~~~--~~~~p~-~~~~~~li~~y~~ 255 (256)
++..+|+.+...+.+.|++++|.+... ....|+ ..++..+..+|.+
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 577899999999999999999988333 233454 4466666666543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=4.4e-12 Score=108.62 Aligned_cols=180 Identities=9% Similarity=-0.035 Sum_probs=87.8
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.+.+.|+.+.|.++|+.+.+... |..+...+...++...+ +..|+++....+.. ...+..+
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~p~~---------~~~~~~l 100 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVIQLKMDF---------TAARLQR 100 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCTTC---------HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHhcCCCc---------HHHHHHH
Confidence 34566777777777776643221 44455555556666666 66666655433221 2233344
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-------HH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-------AV------------LIELERQEETILAVKIFDIIRKQDWYQP 140 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~p 140 (256)
...|.+.|+.++|...+ +.+.... |+.. .+ -..+.+.|++++|...|+++.+.. ..
T Consensus 101 ~~~~~~~g~~~~A~~~~-~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~ 175 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDF-KKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VW 175 (450)
T ss_dssp HHHHHHTTCHHHHHHHH-HHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHcCCHHHHHHHH-HHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence 45556666666665332 3333221 2110 11 122444555555555555555443 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+..++..+...|.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.|++++|.+.|+++.
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555555544321 1234445555555555555555555555444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.34 E-value=8.6e-12 Score=106.77 Aligned_cols=237 Identities=11% Similarity=0.042 Sum_probs=145.3
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCc--cccccccc----
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSL--WRGKKLIG---- 73 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~--~~~~~~~~---- 73 (256)
.+.+.|+.+.|.+.|+.+.+.+. |..+...+...++...+ +..|+++....+.... ..+..+..
T Consensus 69 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 143 (450)
T 2y4t_A 69 VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA-----EDDFKKVLKSNPSENEEKEAQSQLIKSDEM 143 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 46678999999999998765432 66666777778888888 9999888765432210 01110000
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
.........+.+.|+.++|+..+ +.+.... -.+... .+..++.+.|++++|.+.|+++.+.. ..+..+|..+...
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFL-DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTL 220 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 01112233467777888877444 4443322 111111 46677777788888888888777664 5567777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHH------------HHHHHHcCChhHHHHHHHHHHhCCCCCC-----hh
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDS-QTYTEV------------IRGFLKDGSPADAMNIYEDMIKSPDPPE-----EL 213 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~l------------i~~~~~~g~~~~a~~~~~~M~~~g~~p~-----~~ 213 (256)
|...|++++|.+.|+++.+. .|+. ..+..+ ...|.+.|++++|.++|+++.+. .|+ ..
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~ 296 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVR 296 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHH
Confidence 88888888888887777653 3433 333333 66777777777777777777663 333 34
Q ss_pred HHHHHHHHhcCCCChHHHHHhhh--hhcCCC-cccccchhHhh
Q 025226 214 PFRILLKGLLPHPLLRSKVKKDF--EELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 214 t~~~li~~~~~~g~~~~a~~~~~--~~~~p~-~~~~~~li~~y 253 (256)
.|..+...+.+.|++++|++... -.+.|+ ...|..+..+|
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 66677777777777777777222 223443 34454444443
No 11
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.31 E-value=1.1e-12 Score=111.34 Aligned_cols=185 Identities=7% Similarity=-0.013 Sum_probs=60.9
Q ss_pred ccccCCchHHHHHHHHHhcCCCccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhc
Q 025226 6 FSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKR 85 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 85 (256)
..+.|..+.|.++++.+....+|..+..++.+.+++..+ ++.|... ++ ...+..++..+..
T Consensus 13 l~~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eA-----Idsfika------~D--------~~~y~~V~~~ae~ 73 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEA-----IDSYIKA------DD--------PSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHH-----HHHHHcC------CC--------HHHHHHHHHHHHh
Confidence 456788999999999998877899999999999999999 9999532 11 1234445677888
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
.|+.++|+. ++++..+..-.|.+. .++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...
T Consensus 74 ~g~~EeAi~-yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVK-YLQMARKKARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp ------------------------------------CHHHHTTTTT--------CC----------------CTTTHHHH
T ss_pred CCCHHHHHH-HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999984 665555432222223 48999999999999887774 36777999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 165 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|..+ ..|..+..++.+.|++++|.+.+.++ .+..||..++.+|...|+++.|..
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHH
Confidence 9876 47888888888888888888888887 267888888888888888887755
No 12
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.25 E-value=2.2e-11 Score=101.39 Aligned_cols=212 Identities=10% Similarity=0.029 Sum_probs=159.5
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.+.+.|+.+.|.+.++.+.+... |..+-..+...++...+ +..|++.....+.. ...+..+
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~~~~---------~~~~~~l 138 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA-----ISALRRCLELKPDN---------QTALMAL 138 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCTTC---------HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH-----HHHHHHHHhcCCCC---------HHHHHHH
Confidence 34567889999999998765432 55555566677777777 88887776543221 2345556
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccC-CCcHHH----------------HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLL-KMDIVA----------------VLIELERQEETILAVKIFDIIRKQDWYQPDA 142 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 142 (256)
...+...|+.++|+..+ +......- .+.... .+..+...|++++|...|+++.+..+-.++.
T Consensus 139 ~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 217 (368)
T 1fch_A 139 AVSFTNESLQRQACEIL-RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 217 (368)
T ss_dssp HHHHHHTTCHHHHHHHH-HHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred HHHHHHcCCHHHHHHHH-HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccH
Confidence 77888999999998555 44443221 111111 2555558899999999999998886222268
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
.+|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...|
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 295 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 295 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 999999999999999999999999988742 2357899999999999999999999999988752 24577899999999
Q ss_pred cCCCChHHHHH
Q 025226 223 LPHPLLRSKVK 233 (256)
Q Consensus 223 ~~~g~~~~a~~ 233 (256)
.+.|++++|.+
T Consensus 296 ~~~g~~~~A~~ 306 (368)
T 1fch_A 296 INLGAHREAVE 306 (368)
T ss_dssp HHHTCHHHHHH
T ss_pred HHCCCHHHHHH
Confidence 99999999988
No 13
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.25 E-value=9.6e-12 Score=103.79 Aligned_cols=210 Identities=9% Similarity=0.030 Sum_probs=159.9
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
.+.+.|+.+.|.+.|+.+.+... |..+-..+...++...+ +..|++.....+.. ...+..+
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-----~~~~~~al~~~p~~---------~~~~~~l 139 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAA-----IVALQRCLELQPNN---------LKALMAL 139 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCTTC---------HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHhcCCCC---------HHHHHHH
Confidence 35567899999999998754322 66666677778888887 88888776543322 3455666
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH--------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV--------------AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y 145 (256)
...|.+.|+.++|+..+ +...+. .|+.. .+...+.+.|++++|.+.|+++.+..+-.++..+|
T Consensus 140 ~~~~~~~g~~~~A~~~~-~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEAL-KNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHTTCHHHHHHHH-HHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHccccHHHHHHHH-HHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 78889999999998554 444332 12221 24677888999999999999999886222379999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
..+...|...|++++|.+.|++..+.. +.+..+|+.+...|.+.|++++|.+.|++..+.. +.+..+|..+...|.+.
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC
Confidence 999999999999999999999988742 2357899999999999999999999999988762 22478899999999999
Q ss_pred CChHHHHH
Q 025226 226 PLLRSKVK 233 (256)
Q Consensus 226 g~~~~a~~ 233 (256)
|++++|.+
T Consensus 295 g~~~~A~~ 302 (365)
T 4eqf_A 295 GAYREAVS 302 (365)
T ss_dssp TCCHHHHH
T ss_pred CCHHHHHH
Confidence 99999988
No 14
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.23 E-value=4.5e-11 Score=97.55 Aligned_cols=209 Identities=10% Similarity=0.028 Sum_probs=157.2
Q ss_pred ccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
+.+.|+.+.|.++++.+.+... |..+-..+...++...+ +..|++.....+.. ...+..+.
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~a~~~~~~~---------~~~~~~la 96 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLA-----IIALNHARMLDPKD---------IAVHAALA 96 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCTTC---------HHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHhcCcCC---------HHHHHHHH
Confidence 4567889999999998754332 55555566667777777 88887776543221 23445566
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhcc-CCCcHHHHH--------------HH--HHHcCCHHHHHHHHHHHHhcCCCCCCHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRL-LKMDIVAVL--------------IE--LERQEETILAVKIFDIIRKQDWYQPDAY 143 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~li--------------~~--~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 143 (256)
..+...|+.++|...+ +...... -.+.....+ .. +...|++++|.+.+++..+.. ..+..
T Consensus 97 ~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 173 (327)
T 3cv0_A 97 VSHTNEHNANAALASL-RAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PNDAQ 173 (327)
T ss_dssp HHHHHTTCHHHHHHHH-HHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTCHH
T ss_pred HHHHHcCCHHHHHHHH-HHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCCHH
Confidence 7788999999998555 4444322 111211222 33 677899999999999999886 56889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhc
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLL 223 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~ 223 (256)
++..+...|...|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.
T Consensus 174 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 251 (327)
T 3cv0_A 174 LHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYS 251 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 99999999999999999999999988742 2357889999999999999999999999988753 235778999999999
Q ss_pred CCCChHHHHH
Q 025226 224 PHPLLRSKVK 233 (256)
Q Consensus 224 ~~g~~~~a~~ 233 (256)
+.|++++|.+
T Consensus 252 ~~g~~~~A~~ 261 (327)
T 3cv0_A 252 NMSQYDLAAK 261 (327)
T ss_dssp HTTCHHHHHH
T ss_pred HhccHHHHHH
Confidence 9999999988
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.20 E-value=3.1e-10 Score=92.62 Aligned_cols=154 Identities=8% Similarity=-0.011 Sum_probs=86.3
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
+..+...+...|+.++|+..+ +...... -.+... .+-..+...|++++|.+.|++..+.. +.+..++..+...|.
T Consensus 128 ~~~l~~~~~~~~~~~~A~~~~-~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~ 204 (330)
T 3hym_B 128 WIAYGHSFAVESEHDQAMAAY-FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA--PEDPFVMHEVGVVAF 204 (330)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHH-HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 334445555666666665433 2322211 111111 34555566666666666666666554 445666666666666
Q ss_pred hcCCHHHHHHHHHHHHhCC--------CCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 154 RTGKMNEAMQVWESMRKED--------LFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
..|++++|.+.|++..+.. ...+..+|..+...|.+.|++++|.+.|++..+.. ..+...|..+...|.+.
T Consensus 205 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 283 (330)
T 3hym_B 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLM 283 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHh
Confidence 6666666666666655421 12234566666666666666666666666665442 12445566666666666
Q ss_pred CChHHHHH
Q 025226 226 PLLRSKVK 233 (256)
Q Consensus 226 g~~~~a~~ 233 (256)
|++++|.+
T Consensus 284 g~~~~A~~ 291 (330)
T 3hym_B 284 GNFENAVD 291 (330)
T ss_dssp TCHHHHHH
T ss_pred ccHHHHHH
Confidence 66666666
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.19 E-value=3.6e-10 Score=92.24 Aligned_cols=230 Identities=9% Similarity=-0.102 Sum_probs=165.3
Q ss_pred ccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
+-..|+.+.|.++++.+.+... +..+...+...++...+ +..++++....+.. ...+..+.
T Consensus 32 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~~~~~~~~~---------~~~~~~l~ 97 (330)
T 3hym_B 32 HYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANEL-----FYLSHKLVDLYPSN---------PVSWFAVG 97 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHH-----HHHHHHHHHHCTTS---------THHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHH-----HHHHHHHHHhCcCC---------HHHHHHHH
Confidence 3456899999999998754332 33344445555666666 88887776543322 23445556
Q ss_pred HHhhcCC-CcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 81 LGLKRFK-DDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 81 ~~~~~~~-~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
..+...| +.++|...+ +...... -.+... .+-..+...|++++|.+.|++..+.. ..+...+..+...|...|+
T Consensus 98 ~~~~~~~~~~~~A~~~~-~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYL-SKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHSCSCHHHHHHHH-HHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhHHHHHHHH-HHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhh
Confidence 7778888 899998544 4444332 222222 57888899999999999999999886 4566778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC--------CCCChhHHHHHHHHhcCCCChH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP--------DPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g--------~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+++|.+.|++..+.. +.+...|..+...|.+.|++++|...|++..+.. ...+...|..+...|.+.|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999988753 2357889999999999999999999999887531 1344678999999999999999
Q ss_pred HHHHhhh--hhcCCC-cccccchhHhh
Q 025226 230 SKVKKDF--EELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 230 ~a~~~~~--~~~~p~-~~~~~~li~~y 253 (256)
+|.+... ..+.|+ ...|..+..+|
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~ 280 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIH 280 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 9998322 233443 34455554444
No 17
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.14 E-value=8.2e-09 Score=80.48 Aligned_cols=196 Identities=8% Similarity=-0.035 Sum_probs=139.1
Q ss_pred ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CC
Q 025226 28 KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LK 106 (256)
Q Consensus 28 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~ 106 (256)
|..+-..+...++...+ +..|++.....+.. ...+..+...+.+.|+.++|+..+ +...... -.
T Consensus 26 ~~~~a~~~~~~~~~~~A-----~~~~~~~l~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~-~~~~~~~~~~ 90 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKA-----AEAFTKAIEENKED---------AIPYINFANLLSSVNELERALAFY-DKALELDSSA 90 (243)
T ss_dssp ----------------C-----CTTHHHHHTTCTTC---------HHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTC
T ss_pred HHHHHHHHHHhhCHHHH-----HHHHHHHHHhCccc---------HHHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCcc
Confidence 44444455566777777 88888776643322 234445567788999999998655 4443332 11
Q ss_pred CcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 025226 107 MDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185 (256)
Q Consensus 107 ~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 185 (256)
+... .+...+...|++++|.+.|++..+.. ..+...|..+...|.+.|++++|.+.+++..+.. ..+...+..+..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 167 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGM 167 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 2222 47778889999999999999999886 6688899999999999999999999999988742 236788999999
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCC
Q 025226 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPE 242 (256)
Q Consensus 186 ~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~ 242 (256)
.|.+.|++++|.+.|++..+.. ..+..++..+...|.+.|++++|.+ .......|+
T Consensus 168 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 168 CLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 9999999999999999988653 2357789999999999999999988 233344554
No 18
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.11 E-value=4e-10 Score=91.86 Aligned_cols=221 Identities=10% Similarity=-0.046 Sum_probs=156.2
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccc---cchhH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKL---IGKEA 76 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~---~~~~~ 76 (256)
.+.+.|+.+.|.+.++...+... +..+-..+...++...+ +..++......+.......... .....
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA-----LASLRAWLLSQPQYEQLGSVNLQADVDIDD 138 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHTSTTTTTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCCccHHHHHHHhHHHHHHHH
Confidence 45678899999999998754322 44555556667777777 8888777654332211110000 00000
Q ss_pred HHHH-H--HhhcCCCcHHHHHHHHHHHhhccC-CCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 77 LFVI-L--GLKRFKDDEEKLQKFIKTHVLRLL-KMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 77 ~~~i-~--~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
...+ . .+...|+.++|...+ +......- .+... .+...+.+.|++++|.+.+++..+.. ..+..+|..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~ 215 (327)
T 3cv0_A 139 LNVQSEDFFFAAPNEYRECRTLL-HAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGAT 215 (327)
T ss_dssp -------CCTTSHHHHHHHHHHH-HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHcccHHHHHHHH-HHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 0001 2 266778888988544 44443321 12222 47788899999999999999999886 5678999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-----------ChhHHHHHHH
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-----------EELPFRILLK 220 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-----------~~~t~~~li~ 220 (256)
|...|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+....+ +...|..+..
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 999999999999999988742 2357889999999999999999999999987653221 5788999999
Q ss_pred HhcCCCChHHHHHh
Q 025226 221 GLLPHPLLRSKVKK 234 (256)
Q Consensus 221 ~~~~~g~~~~a~~~ 234 (256)
.|.+.|+.++|...
T Consensus 295 ~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 295 LLNVMNRPDLVELT 308 (327)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhcCCHHHHHHH
Confidence 99999999999883
No 19
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.11 E-value=6.6e-09 Score=81.72 Aligned_cols=154 Identities=15% Similarity=0.100 Sum_probs=103.3
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
+..+...+...|+.++|+..+ +...... -.+... .+-..+...|++++|.+.|++..+.. ..+...|..+...|.
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPL-RKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHH-HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHH-HHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHH
Confidence 344455667778888877444 3433322 111111 35666777788888888888777765 456777777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
..|++++|.+.|++..+.+..| +...|..+...|.+.|++++|.+.|++..+.. ..+...+..+...|...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888777643344 34667777777778888888888887776542 224566777777777788877777
Q ss_pred H
Q 025226 233 K 233 (256)
Q Consensus 233 ~ 233 (256)
+
T Consensus 196 ~ 196 (252)
T 2ho1_A 196 Q 196 (252)
T ss_dssp H
T ss_pred H
Confidence 7
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.10 E-value=1.4e-10 Score=96.73 Aligned_cols=221 Identities=11% Similarity=-0.018 Sum_probs=156.7
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccccc-ccchhHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKK-LIGKEALF 78 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~-~~~~~~~~ 78 (256)
.|.+.|+.+.|.+.|+...+... |..+-..+...++...+ +..|++.....+......... ........
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 182 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA-----CEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCHHHHCC-------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHH-----HHHHHHHHHhCccchHHHhhhccchHHHHH
Confidence 46678999999999998754322 66666677778888877 888877765432211111000 00112223
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhcc-C--CCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRL-L--KMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
+...+.+.|+.++|+..+ +...... - .+... .+-..+...|++++|.+.|++..+.. +.+..+|+.+...|..
T Consensus 183 l~~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 183 MSKSPVDSSVLEGVKELY-LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR--PEDYSLWNRLGATLAN 259 (365)
T ss_dssp ------CCHHHHHHHHHH-HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHH-HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 356778899999998555 4544432 2 12222 57888899999999999999999886 6689999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC---C--------CCChhHHHHHHHHh
Q 025226 155 TGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP---D--------PPEELPFRILLKGL 222 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g---~--------~p~~~t~~~li~~~ 222 (256)
.|++++|.+.|++..+. .| +..+|..+...|.+.|++++|.+.|++..+.. . ..+...|..+-.++
T Consensus 260 ~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 337 (365)
T 4eqf_A 260 GDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIAL 337 (365)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHH
Confidence 99999999999998874 35 47889999999999999999999999987541 1 11478899999999
Q ss_pred cCCCChHHHHHhh
Q 025226 223 LPHPLLRSKVKKD 235 (256)
Q Consensus 223 ~~~g~~~~a~~~~ 235 (256)
...|+.+.+.+..
T Consensus 338 ~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 338 SLMDQPELFQAAN 350 (365)
T ss_dssp HHHTCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 9999988777643
No 21
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.09 E-value=4e-09 Score=83.01 Aligned_cols=195 Identities=9% Similarity=0.058 Sum_probs=143.4
Q ss_pred ccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-H
Q 025226 34 AFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-A 111 (256)
Q Consensus 34 a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~ 111 (256)
.+...++...+ +..|++.....+.. ...+..+...+.+.|+.++|...+ +...... -.+... .
T Consensus 46 ~~~~~~~~~~A-----~~~~~~al~~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~-~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 46 GYLQRGNTEQA-----KVPLRKALEIDPSS---------ADAHAALAVVFQTEMEPKLADEEY-RKALASDSRNARVLNN 110 (252)
T ss_dssp HHHHTTCTGGG-----HHHHHHHHHHCTTC---------HHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHH-----HHHHHHHHhcCCCh---------HHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHCcCcHHHHHH
Confidence 33445566666 77777665443221 234455567788999999998555 4443332 122222 4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQP-DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
+...+...|++++|.+.|++..+.+ ..| +...|..+...|...|++++|.+.|++..+.. ..+...|..+...|.+.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDT-LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCT-TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCc-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 7788889999999999999998833 334 67788999999999999999999999988743 23578899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCcccc
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAY 246 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~ 246 (256)
|++++|.++|++..+.. ..+...+..+...|...|+.++|.+ .......|+...+
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999988753 3566778889999999999999988 3334455654433
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.08 E-value=4.2e-10 Score=91.61 Aligned_cols=205 Identities=10% Similarity=0.005 Sum_probs=115.8
Q ss_pred cccccCCchHHHHHHHHHhcCCC---ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS---KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVIL 81 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~---~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (256)
+|-..|+++.|+.-++.. ..+. +..+...+...++.+.+ +..++++......|+. ...+..+-.
T Consensus 43 ~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A-----~~~l~~ll~~~~~P~~-------~~~~~~la~ 109 (291)
T 3mkr_A 43 AYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAI-----VAELDREMSRSVDVTN-------TTFLLMAAS 109 (291)
T ss_dssp HHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHH-----HHHHHHHHHSCCCCSC-------HHHHHHHHH
T ss_pred HHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHH-----HHHHHHHHhcccCCCC-------HHHHHHHHH
Confidence 344455565555544332 1111 34444444555555555 6666665543322210 112223345
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH---HHHHHHHHhcCC
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY---KDLIIALARTGK 157 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y---~~li~~~~~~g~ 157 (256)
.+.+.|+.++|+..+ +. +-.++.. .+...+.+.|++++|.+.|+++.+.. |+...+ ...+..+...|+
T Consensus 110 ~~~~~g~~~~Al~~l-~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~l~~a~~~l~~~~~~ 181 (291)
T 3mkr_A 110 IYFYDQNPDAALRTL-HQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDATLTQLATAWVSLAAGGEK 181 (291)
T ss_dssp HHHHTTCHHHHHHHH-TT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCTTH
T ss_pred HHHHCCCHHHHHHHH-hC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCcHHHHHHHHHHHHHhCchH
Confidence 667777777776433 22 1112222 36667777777888888777777664 332211 223333344577
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
+++|..+|+++.+. .+.+...|+.+-..|.+.|++++|.+.|++..+.. +-+..++..++..+...|+.+++.
T Consensus 182 ~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 182 LQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHH
Confidence 77888888777765 33466777777777777788888888777766542 225556777777777777766543
No 23
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.07 E-value=2.3e-08 Score=76.78 Aligned_cols=154 Identities=11% Similarity=-0.027 Sum_probs=102.3
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
+..+...+...|+.++|+..+ +...+.. -.+... .+...+...|++++|.+.|++..+.. ..+..+|..+...|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASI-EDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHH-HHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHH
Confidence 344456667778888877444 3333322 111222 35666777788888888888777664 456777777777788
Q ss_pred hc-CCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHH
Q 025226 154 RT-GKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 154 ~~-g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a 231 (256)
.. |++++|.+.|+++.+.+..|+ ...|..+...|.+.|++++|.+.|++..+.. ..+...+..+...|.+.|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 88 888888888887776323333 4667777777777888888888887776542 12356677777777777877777
Q ss_pred HH
Q 025226 232 VK 233 (256)
Q Consensus 232 ~~ 233 (256)
.+
T Consensus 167 ~~ 168 (225)
T 2vq2_A 167 DY 168 (225)
T ss_dssp HH
T ss_pred HH
Confidence 77
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.07 E-value=5.9e-10 Score=92.65 Aligned_cols=220 Identities=13% Similarity=-0.019 Sum_probs=156.5
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCcccccc------ccc
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKK------LIG 73 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~------~~~ 73 (256)
.+.+.|+.+.|.+.++...+... +..+...+...++...+ +..|++.....+......... ...
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA-----CEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHTSTTTGGGCC-----------
T ss_pred HHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence 45678899999999998654322 55555666677777777 888877765543321111100 000
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCC-CcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLK-MDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
......+..+...|+.++|+..+ +......-. ++.. .+-..+.+.|++++|...|++..+.. +.+..+|..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~-~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~ 258 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELF-LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLG 258 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHH-HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHH-HHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHH
Confidence 00000122233778899998554 444443221 1222 47888899999999999999999885 56789999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CC-------ChhHHHHHH
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD---PP-------EELPFRILL 219 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~---~p-------~~~t~~~li 219 (256)
..|...|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+.|++..+... .| ...+|..+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 99999999999999999988742 23578899999999999999999999999875421 11 268899999
Q ss_pred HHhcCCCChHHHHH
Q 025226 220 KGLLPHPLLRSKVK 233 (256)
Q Consensus 220 ~~~~~~g~~~~a~~ 233 (256)
.+|...|+.++|..
T Consensus 338 ~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 338 LALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHTCGGGHHH
T ss_pred HHHHHhCChHhHHH
Confidence 99999999999877
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.06 E-value=2.5e-10 Score=97.00 Aligned_cols=196 Identities=12% Similarity=-0.006 Sum_probs=89.9
Q ss_pred cccccccCCchHHHHHHHHHhcCCCccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHH
Q 025226 3 TRLFSRSKIPILASIVLQNLTKNPSKNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILG 82 (256)
Q Consensus 3 i~~~~~~~~~~~A~~l~~~m~~~~~~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (256)
..++.+.|+.++|++.|.+......|..+..++...+..+++ +..++..++.. ++ ......++.+
T Consensus 39 a~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeA-----i~yl~~ark~~--~~--------~~i~~~Li~~ 103 (449)
T 1b89_A 39 AKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEEL-----VKYLQMARKKA--RE--------SYVETELIFA 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHH-----HHHHHHHHHhC--cc--------chhHHHHHHH
Confidence 346778899999999998876655699999999998888888 88665554431 11 1223345788
Q ss_pred hhcCCCcHHHHHHHHHHHhhccCCCc---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 025226 83 LKRFKDDEEKLQKFIKTHVLRLLKMD---IVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~ 159 (256)
|.+.|++.++. .+++ .|+ ...+-..|...|.+++|...|+.+ ..|..+..++++.|+++
T Consensus 104 Y~Klg~l~e~e-~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq 165 (449)
T 1b89_A 104 LAKTNRLAELE-EFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQ 165 (449)
T ss_dssp -----CHHHHT-TTTT-------CC----------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHH
T ss_pred HHHhCCHHHHH-HHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHH
Confidence 99999998875 4543 243 336899999999999999999976 26999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhhhhhc
Q 025226 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKDFEEL 239 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~ 239 (256)
+|.+.+.++ .++.+|..++.+|+..|+++.|......+. +.|+. ...++..|.+.|.+++++.....++
T Consensus 166 ~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 166 AAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 999999988 378999999999999999999966555422 33443 5579999999999999988555555
Q ss_pred CCC
Q 025226 240 FPE 242 (256)
Q Consensus 240 ~p~ 242 (256)
.-|
T Consensus 235 ~le 237 (449)
T 1b89_A 235 GLE 237 (449)
T ss_dssp TST
T ss_pred CCc
Confidence 443
No 26
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=6.7e-09 Score=89.97 Aligned_cols=211 Identities=8% Similarity=-0.050 Sum_probs=161.7
Q ss_pred cccccCCchHHHHHHHHHhcCC--C--ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 5 LFSRSKIPILASIVLQNLTKNP--S--KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~--~--~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
.+.+.|+.+.|.+.++...+.. . |..+...+...++...+ +..++......+.. ...+..+.
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~~~~~~~~~---------~~~~~~l~ 311 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEY-----YNYFDKALKLDSNN---------SSVYYHRG 311 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTG-----GGHHHHHHTTCTTC---------THHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHH-----HHHHHHHhhcCcCC---------HHHHHHHH
Confidence 3567889999999999865322 2 55555667777888887 89998877654322 23455566
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
..+...|+.++|+..+ +...... -.+... .+...+...|++++|...|++..+.. ..+..+|..+...|.+.|++
T Consensus 312 ~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDF-DKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHTTCTTHHHHHH-HHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHH-HHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCH
Confidence 7888999999998555 4443322 222322 47778889999999999999998875 55778999999999999999
Q ss_pred HHHHHHHHHHHhCC-CCCC----HhhHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 159 NEAMQVWESMRKED-LFPD----SQTYTEVIRGFLK---DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 159 ~~a~~~~~~m~~~g-~~p~----~~t~~~li~~~~~---~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
++|.+.|+++.+.. -.|+ ...|..+...|.+ .|++++|.+.|++..+.. ..+..++..+...|.+.|++++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence 99999999987631 1122 3489999999999 999999999999988753 2356788899999999999999
Q ss_pred HHH
Q 025226 231 KVK 233 (256)
Q Consensus 231 a~~ 233 (256)
|.+
T Consensus 468 A~~ 470 (514)
T 2gw1_A 468 AIT 470 (514)
T ss_dssp HHH
T ss_pred HHH
Confidence 988
No 27
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.03 E-value=3.9e-09 Score=81.14 Aligned_cols=171 Identities=12% Similarity=0.025 Sum_probs=128.3
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQ-EETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
.+..+...+...|+.++|...+ +...... -.+... .+...+... |++++|...+++..+.+....+...|..+...
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~-~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 122 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESF-RQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGIC 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence 3445566778999999998555 4443322 112222 477888899 99999999999999843123347889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHH
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a 231 (256)
|...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|.+++++..+.....+...+..+...+...|+.+++
T Consensus 123 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 201 (225)
T 2vq2_A 123 SAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA 201 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence 999999999999999988742 2257889999999999999999999999988763324677788888888999999888
Q ss_pred HH--hhhhhcCCCccccc
Q 025226 232 VK--KDFEELFPEKHAYD 247 (256)
Q Consensus 232 ~~--~~~~~~~p~~~~~~ 247 (256)
.. .......|+...+.
T Consensus 202 ~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 202 YEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 77 23334567655443
No 28
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.03 E-value=1.6e-08 Score=75.14 Aligned_cols=152 Identities=7% Similarity=-0.046 Sum_probs=123.0
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
+..+...+...|+.++|+..+ +......- .+.. .+...+...|++++|...+++..+.. ..+...|..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLL-EQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-TTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHH-HHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHH
Confidence 344556778899999998544 44433211 1222 47778889999999999999998885 66889999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
...|++++|.+.|++..+.. +.+...+..+...|.+.|++++|.+.+++..+.. ..+...+..+...|...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988752 2467888999999999999999999999988763 345788899999999999999998
Q ss_pred H
Q 025226 233 K 233 (256)
Q Consensus 233 ~ 233 (256)
+
T Consensus 165 ~ 165 (186)
T 3as5_A 165 P 165 (186)
T ss_dssp H
T ss_pred H
Confidence 8
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.02 E-value=5.5e-09 Score=81.06 Aligned_cols=150 Identities=11% Similarity=0.035 Sum_probs=91.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHc-----------CCHHHHHHHHHHHHhcCCCCC
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQ-----------EETILAVKIFDIIRKQDWYQP 140 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~p 140 (256)
+..+-..+.+.|+.++|+..+ +...+. .|+.. .+-..+... |++++|...|++..+.. +-
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~-~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~ 116 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENG-KTLVAR--TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PR 116 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-HHHHHH--CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TT
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cc
Confidence 333445566777777776444 333222 23221 345555566 77777777777777664 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
+...|..+-..|...|++++|...|++..+.. .+...+..+-..|...|++++|...|++..+.. +-+...+..+..
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 56677777777777777777777777777655 566777777777777777777777777776542 124556667777
Q ss_pred HhcCCCChHHHHH
Q 025226 221 GLLPHPLLRSKVK 233 (256)
Q Consensus 221 ~~~~~g~~~~a~~ 233 (256)
.+.+.|++++|.+
T Consensus 194 ~~~~~g~~~~A~~ 206 (217)
T 2pl2_A 194 ALLLKGKAEEAAR 206 (217)
T ss_dssp HHTC---------
T ss_pred HHHHccCHHHHHH
Confidence 7777777777766
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.00 E-value=1.8e-08 Score=81.96 Aligned_cols=217 Identities=8% Similarity=-0.026 Sum_probs=149.4
Q ss_pred cCCchHHHHHHHHHhcCCC------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHH
Q 025226 9 SKIPILASIVLQNLTKNPS------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILG 82 (256)
Q Consensus 9 ~~~~~~A~~l~~~m~~~~~------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~ 82 (256)
.|..+.|++.++....... .-.+..++...|+.+.+ +..++. . ..+ .......+...
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~a-----l~~~~~---~-~~~--------~~~a~~~la~~ 74 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVV-----LDEIKP---S-SAP--------ELQAVRMFAEY 74 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHH-----HHHSCT---T-SCH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHH-----HHHhcc---c-CCh--------hHHHHHHHHHH
Confidence 5677778887776544332 22334555566666666 554432 1 111 01233334567
Q ss_pred hhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 83 LKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
+++.++.++|+..+ +.+...+..|+.. .+-..+...|++++|++.+++ ..+...+..+...|.+.|++
T Consensus 75 ~~~~~~~~~A~~~l-~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 75 LASHSRRDAIVAEL-DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHCSTTHHHHHHHH-HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCH
T ss_pred HcCCCcHHHHHHHH-HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCH
Confidence 88889999998554 6666665556433 244778899999999999987 35788999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhH---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHhh
Q 025226 159 NEAMQVWESMRKEDLFPDSQTY---TEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKKD 235 (256)
Q Consensus 159 ~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 235 (256)
++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...|+.+..+|.+.|++++|.+..
T Consensus 147 ~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l 223 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVL 223 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998853 664322 22333344458999999999999987 4568889999999999999999999833
Q ss_pred h--hhcCCC-cccccchhHhh
Q 025226 236 F--EELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 236 ~--~~~~p~-~~~~~~li~~y 253 (256)
. -...|+ ..++..++..+
T Consensus 224 ~~al~~~p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 224 QEALDKDSGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHH
Confidence 2 334454 44555555443
No 31
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=5.2e-08 Score=68.18 Aligned_cols=118 Identities=14% Similarity=0.180 Sum_probs=70.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+...+...|++++|..+|+++.+.. ..+...|..+...+...|++++|.+.|+++.+.+ ..+...|..+...|.+.|
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 4445556666666666666666554 3455666666666666666666666666665532 123455666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++++|.++++++.+.. ..+...+..+...|.+.|++++|.+
T Consensus 84 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 84 DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHH
Confidence 6666666666665542 1234555666666666666666665
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=98.96 E-value=5.1e-08 Score=75.53 Aligned_cols=169 Identities=11% Similarity=-0.054 Sum_probs=132.7
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
+..+-..+.+.|+.++|+..+ +...+. .|+.. .+-..+.+.|++++|...|++..+.. +-+...|..+-..
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~-~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLF-ERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEA 82 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-HHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH-HHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence 334456778999999998555 444332 24322 46677889999999999999999886 5678899999999
Q ss_pred HHhc-----------CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 025226 152 LART-----------GKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219 (256)
Q Consensus 152 ~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li 219 (256)
|... |++++|...|++..+. .| +...|..+-..|...|++++|...|++..+.. .+...+..+-
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 9999 9999999999998874 35 46788888899999999999999999998877 7889999999
Q ss_pred HHhcCCCChHHHHHhh--hhhcCCC-cccccchhHhh
Q 025226 220 KGLLPHPLLRSKVKKD--FEELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 220 ~~~~~~g~~~~a~~~~--~~~~~p~-~~~~~~li~~y 253 (256)
..|...|++++|+... .-...|+ ...+..+..+|
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 9999999999998832 2334554 33444444444
No 33
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.95 E-value=1.1e-08 Score=84.19 Aligned_cols=216 Identities=10% Similarity=-0.002 Sum_probs=158.2
Q ss_pred ccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
+-+.|+.+.|.+.|+...+... |..+-..+...++...+ +..|+......+.. ...+..+.
T Consensus 13 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A-----~~~~~~~~~~~~~~---------~~~~~~l~ 78 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAA-----LPDLTKVIALKMDF---------TAARLQRG 78 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH-----HHHHHHHHHHCTTC---------HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHH-----HHHHHHHHHhCCCc---------chHHHHHH
Confidence 4568899999999998754332 44444455566777777 88887776543322 24455567
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCC---cHH---H-H------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKM---DIV---A-V------------LIELERQEETILAVKIFDIIRKQDWYQPD 141 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~---~-l------------i~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 141 (256)
..+.+.|+.++|+..+ +...+. .| +.. . + -..+...|++++|.+.+++..+.. +.+
T Consensus 79 ~~~~~~~~~~~A~~~~-~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 153 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDF-KKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWD 153 (359)
T ss_dssp HHHHHHTCHHHHHHHH-HHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHcCChHHHHHHH-HHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCc
Confidence 7888999999998544 454433 24 222 1 2 367889999999999999999886 678
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHH----
Q 025226 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFR---- 216 (256)
Q Consensus 142 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~---- 216 (256)
..++..+...|...|++++|.+.|++..+.. +.+...|..+...|...|++++|.+.|++..+.. |+ ...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 230 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQ 230 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHH
Confidence 8999999999999999999999999998753 3467889999999999999999999999988652 33 22222
Q ss_pred --------HHHHHhcCCCChHHHHHh--hhhhcCCCc
Q 025226 217 --------ILLKGLLPHPLLRSKVKK--DFEELFPEK 243 (256)
Q Consensus 217 --------~li~~~~~~g~~~~a~~~--~~~~~~p~~ 243 (256)
.+...+.+.|++++|.+. ......|+.
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 267 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSV 267 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 225668899999999882 223344553
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.93 E-value=1.4e-08 Score=83.51 Aligned_cols=217 Identities=11% Similarity=0.035 Sum_probs=121.6
Q ss_pred cccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCC---CCCcccccccc----
Q 025226 5 LFSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRP---RGSLWRGKKLI---- 72 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~---~~~~~~~~~~~---- 72 (256)
.+.+.|+.+.|.+.++...+... |..+-..+...++...+ +..|+......+ ... .....+.
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~ 119 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEA-----EDDFKKVLKSNPSEQEEK-EAESQLVKADE 119 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH-----HHHHHHHHTSCCCHHHHH-HHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHH-----HHHHHHHHhcCCcccChH-HHHHHHHHHHH
Confidence 35567889999999998754322 55555566666777777 888887765543 110 0000000
Q ss_pred chhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 73 GKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 73 ~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
..........+...|+.++|+..+.+......-.+... .+-..+...|++++|...+++..+.. +.+..+|..+...
T Consensus 120 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~ 197 (359)
T 3ieg_A 120 MQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 00111123556677777777744432222222112222 35666677777777777777777664 5566777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH-hhHH------------HHHHHHHHcCChhHHHHHHHHHHhCCCCCCh-----h
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDS-QTYT------------EVIRGFLKDGSPADAMNIYEDMIKSPDPPEE-----L 213 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~------------~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~-----~ 213 (256)
|...|++++|.+.|++..+. .|+. ..+. .+...+.+.|++++|.+.+++..+.. |+. .
T Consensus 198 ~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 273 (359)
T 3ieg_A 198 YYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVR 273 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHH
Confidence 77777777777777776653 1322 2222 12344556666666666666665432 221 1
Q ss_pred HHHHHHHHhcCCCChHHHHH
Q 025226 214 PFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 214 t~~~li~~~~~~g~~~~a~~ 233 (256)
.+..+...|.+.|++++|++
T Consensus 274 ~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 274 SKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHH
Confidence 23334555666666666665
No 35
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.92 E-value=5e-09 Score=83.30 Aligned_cols=214 Identities=10% Similarity=-0.073 Sum_probs=130.0
Q ss_pred ccccCCchHHHHHHHHHhcCCC---------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS---------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEA 76 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~---------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 76 (256)
+.+.++.+.|++.++.+.+... |..+-..+...++...+ +..|++.....+.. ...+
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~al~~~~~~---------~~~~ 80 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALA-----RNDFSQALAIRPDM---------PEVF 80 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCCCC---------HHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHH-----HHHHHHHHHcCCCc---------HHHH
Confidence 4556777888888887765410 44444455556666666 77776655433221 2334
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
..+...+...|+.++|+..+ +...... -.+... .+-..+.+.|++++|...|++..+.. |+...+...+..+..
T Consensus 81 ~~la~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~ 156 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAF-DSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQ 156 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHH-HHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH
Confidence 44556677778888877444 3333321 122222 46667777788888888888777664 343344445555566
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--C-ChhHHHHHHHHhcCCCChHHH
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP--P-EELPFRILLKGLLPHPLLRSK 231 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~--p-~~~t~~~li~~~~~~g~~~~a 231 (256)
.|++++|...+++..... .++...+ .+...+...++.++|.+.+.+..+.... | +...|..+...|.+.|++++|
T Consensus 157 ~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 234 (275)
T 1xnf_A 157 KLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234 (275)
T ss_dssp HHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHH
Confidence 677888888886665531 2333333 3666666677777777777776654221 1 157788888999999999999
Q ss_pred HHhhhhhc
Q 025226 232 VKKDFEEL 239 (256)
Q Consensus 232 ~~~~~~~~ 239 (256)
.+.....+
T Consensus 235 ~~~~~~al 242 (275)
T 1xnf_A 235 TALFKLAV 242 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88444333
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=98.91 E-value=2.2e-08 Score=77.98 Aligned_cols=174 Identities=13% Similarity=0.031 Sum_probs=119.6
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+..+-..+.+.|+.++|+..+ +...... -.+... .+-..+...|++++|.+.|++..+.. ..+..+|..+...|
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~-~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAF-TKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVY 101 (243)
T ss_dssp -----------------CCTTH-HHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHH-HHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHH
Confidence 4444556678889999998544 4444322 111222 46778889999999999999999886 56889999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
...|++++|.+.|++..+.. ..+...|..+...|.+.|++++|.+.+++..+.. ..+...+..+...|.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999988743 2367889999999999999999999999988652 236778889999999999999998
Q ss_pred Hhhh--hhcCCC-cccccchhHhh
Q 025226 233 KKDF--EELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 233 ~~~~--~~~~p~-~~~~~~li~~y 253 (256)
+... ....|+ ...+..+..+|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHH
Confidence 8322 223343 34555555444
No 37
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=2.4e-07 Score=64.62 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=101.5
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCC-CcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLK-MDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
+..+...+...|+.++|...+ +........ +... .+...+...|++++|...|+++.+.+ ..+...|..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYY-QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHH-HHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHH
Confidence 344566778899999998544 455443221 1111 46777889999999999999999886 567889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
..|++++|.+.|+++.+.. ..+...+..+...|.+.|++++|.+.|+++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999988743 235788899999999999999999999998764
No 38
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.85 E-value=8.3e-08 Score=83.66 Aligned_cols=211 Identities=11% Similarity=0.026 Sum_probs=156.4
Q ss_pred ccccCCchHHHHHHHHHhcCCC----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVIL 81 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~ 81 (256)
+...|+++.|.+.++...+... |..+-..+...++...+ +..|+......+.. ...+..+..
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~~~~~~~~~---------~~~~~~l~~ 318 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEF-----FKFFQKAVDLNPEY---------PPTYYHRGQ 318 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHH-----HHHHHHHHHHCTTC---------HHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHH-----HHHHHHHhccCCCC---------HHHHHHHHH
Confidence 4567888999999988654322 55555667777877777 88887776543322 334556677
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
.+...|+.++|+..+.+......-.+... .+-..+...|++++|.+.|++..+.. ..+..+|..+-..|...|++++
T Consensus 319 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 319 MYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHH
Confidence 88899999999865543333322223333 57888889999999999999999885 5677899999999999999999
Q ss_pred HHHHHHHHHhCC-----CCCCHhhHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 161 AMQVWESMRKED-----LFPDSQTYTEVIRGFLKD----------GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 161 a~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~----------g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
|.+.|++..+.. .......+..+-..|.+. |++++|...|++..+.. +.+...|..+...|.+.
T Consensus 397 A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~ 475 (537)
T 3fp2_A 397 AIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQM 475 (537)
T ss_dssp HHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 999999987632 111222344445667777 99999999999988753 23567889999999999
Q ss_pred CChHHHHH
Q 025226 226 PLLRSKVK 233 (256)
Q Consensus 226 g~~~~a~~ 233 (256)
|++++|.+
T Consensus 476 g~~~~A~~ 483 (537)
T 3fp2_A 476 EKIDEAIE 483 (537)
T ss_dssp TCHHHHHH
T ss_pred ccHHHHHH
Confidence 99999988
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.85 E-value=5.6e-07 Score=67.21 Aligned_cols=161 Identities=12% Similarity=-0.023 Sum_probs=126.0
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+..+=..|.+.|+.++|+..+-+......-.++.. .+-..+.+.|++++|...+....+.. .-+...+..+-..+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~ 84 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYILGSANF 84 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 344556678889999999965543333222112222 47778889999999999999998886 667888888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
..++++.|.+.+++..+.. +-+...+..+-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|++
T Consensus 85 ~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 85 MIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999987742 2357788899999999999999999999988753 2356788999999999999999999
Q ss_pred hhhhhc
Q 025226 234 KDFEEL 239 (256)
Q Consensus 234 ~~~~~~ 239 (256)
...+.+
T Consensus 163 ~~~~al 168 (184)
T 3vtx_A 163 YFKKAL 168 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444333
No 40
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.84 E-value=7e-09 Score=89.86 Aligned_cols=228 Identities=11% Similarity=-0.017 Sum_probs=166.4
Q ss_pred cccCCchHHHHHHHHHhc-----C----------CC----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccc
Q 025226 7 SRSKIPILASIVLQNLTK-----N----------PS----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWR 67 (256)
Q Consensus 7 ~~~~~~~~A~~l~~~m~~-----~----------~~----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~ 67 (256)
.+.|+.+.|.++++.+.+ . +. |..+-..+...++...+ +..|++.....+.
T Consensus 200 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~~l~~~~~----- 269 (514)
T 2gw1_A 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGA-----HEDIKKAIELFPR----- 269 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHH-----HHHHHHHHHHCCC-----
T ss_pred hhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHhhCcc-----
Confidence 358899999999998766 2 11 44555556667777777 8888777654321
Q ss_pred cccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHH
Q 025226 68 GKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIY 145 (256)
Q Consensus 68 ~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y 145 (256)
...+..+...+...|+.++|+..+ +...... -.++.. .+...+...|++++|...|++..+.. ..+..+|
T Consensus 270 -----~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 341 (514)
T 2gw1_A 270 -----VNSYIYMALIMADRNDSTEYYNYF-DKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--PENIFPY 341 (514)
T ss_dssp -----HHHHHHHHHHHHTSSCCTTGGGHH-HHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSCSHHH
T ss_pred -----HHHHHHHHHHHHHCCCHHHHHHHH-HHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhhHHHH
Confidence 233445567788999999998555 4444332 223333 57788899999999999999999886 5577899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----hhHHHHHHH
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD-PPE----ELPFRILLK 220 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~-~p~----~~t~~~li~ 220 (256)
..+...|...|++++|.+.|++..+.. +.+...|..+...|.+.|++++|...|+++.+... .|+ ...|..+..
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 420 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKAT 420 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 999999999999999999999988742 23567899999999999999999999999876421 122 348999999
Q ss_pred HhcC---CCChHHHHHhh--hhhcCCC-cccccchhHhh
Q 025226 221 GLLP---HPLLRSKVKKD--FEELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 221 ~~~~---~g~~~~a~~~~--~~~~~p~-~~~~~~li~~y 253 (256)
.|.. .|++++|.+.. .....|+ ...+..+..+|
T Consensus 421 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 421 LLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 9999 99999998822 2233454 33444555444
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.9e-07 Score=73.10 Aligned_cols=120 Identities=10% Similarity=0.011 Sum_probs=64.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCC------------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDW------------------------YQPDAYIYKDLIIALARTGKMNEAMQVWES 167 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~------------------------~~p~~~~y~~li~~~~~~g~~~~a~~~~~~ 167 (256)
+-..+.+.|++++|...|++..+... ...+...|..+...|...|++++|.+.|++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44555556666666666666555210 122334455555555666666666666665
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 168 MRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 168 m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
..+.. +.+...|..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|.+
T Consensus 165 a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 165 MIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55432 1234555566666666666666666666555432 1234555555666666666666655
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.80 E-value=1.2e-07 Score=75.27 Aligned_cols=222 Identities=12% Similarity=0.009 Sum_probs=157.9
Q ss_pred ccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVI 80 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i 80 (256)
+-+.|+.+.|++.++...+... +..+-..+...++...+ +..|++.......+ ......+..+-
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~a~~~~~~~------~~~~~~~~~lg 81 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLA-----QKDIETYFSKVNAT------KAKSADFEYYG 81 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHH-----HHHHHHHHTTSCTT------TCCHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHhccCch------hHHHHHHHHHH
Confidence 4578899999999998755332 44444566677777777 88888777632111 11233455667
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~ 159 (256)
..+...|+.++|+..+.+......-.++.. .+-..+...|++++|.+.|++..+.. ..+..+|..+-..+-..++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHH
Confidence 788899999999865544343333333333 57888899999999999999988775 556777777772444456999
Q ss_pred HHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCC---hhHHHHHHHHHHhC-CCCCCh------hHHHHHHHHhcCCCCh
Q 025226 160 EAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGS---PADAMNIYEDMIKS-PDPPEE------LPFRILLKGLLPHPLL 228 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~---~~~a~~~~~~M~~~-g~~p~~------~t~~~li~~~~~~g~~ 228 (256)
+|.+.|++..+. .|+ ...+..+-..+...|+ .++|...|++..+. .-.|+. ..|..+-..|.+.|++
T Consensus 160 ~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 160 KADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999998874 344 6777778888888888 88899999988754 223442 5778888999999999
Q ss_pred HHHHH--hhhhhcCCC
Q 025226 229 RSKVK--KDFEELFPE 242 (256)
Q Consensus 229 ~~a~~--~~~~~~~p~ 242 (256)
++|.+ ...-.+.|+
T Consensus 238 ~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 238 VKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhcCcc
Confidence 99998 333344554
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.74 E-value=8.3e-07 Score=65.59 Aligned_cols=128 Identities=10% Similarity=0.111 Sum_probs=102.6
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+..+...+...|+.++|...+ +...+.. -.+... .+...+...|++++|.+.|++..+.. ..+...+..+...|
T Consensus 44 ~~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 44 VALHLGIAYVKTGAVDRGTELL-ERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHH
Confidence 3445567778999999998554 4443332 112222 46778889999999999999999885 67889999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
...|++++|.+.|++..+.. ..+...+..+...|.+.|++++|.+.+++..+.
T Consensus 121 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999988753 235788999999999999999999999988754
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.73 E-value=7.1e-07 Score=70.66 Aligned_cols=181 Identities=11% Similarity=-0.004 Sum_probs=128.0
Q ss_pred CCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHH
Q 025226 37 PKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLI 114 (256)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~ 114 (256)
..++.+.+ +..|+++.......+. -....+..+...+...|+.++|+..+ +...... -.+... .+-.
T Consensus 17 ~~~~~~~A-----~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~la~ 85 (275)
T 1xnf_A 17 PTLQQEVI-----LARMEQILASRALTDD-----ERAQLLYERGVLYDSLGLRALARNDF-SQALAIRPDMPEVFNYLGI 85 (275)
T ss_dssp CCHHHHHH-----HHHHHHHHTSSCCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHCCCCHHHHHHHHH
T ss_pred ccchHHHH-----HHHHHHHHhcccccCc-----hhHHHHHHHHHHHHHcccHHHHHHHH-HHHHHcCCCcHHHHHHHHH
Confidence 34444455 7788777665321110 11234455667788999999998555 4443322 212222 4777
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChh
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA 194 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 194 (256)
.+...|++++|...|++..+.. +.+..+|..+...|...|++++|.+.|+++.+. .|+...+...+..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~ 161 (275)
T 1xnf_A 86 YLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEK 161 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHH
Confidence 8889999999999999999875 557889999999999999999999999999873 466666666666677789999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 195 ~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
+|...+.+..... .++...+. ++..+...++.++|++.
T Consensus 162 ~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 162 QAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHH
Confidence 9999998777652 33444444 67777777887888773
No 45
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.71 E-value=8.5e-07 Score=69.32 Aligned_cols=152 Identities=12% Similarity=0.138 Sum_probs=71.4
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCC----HHHHHHHHHHHHhc
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDW-YQPD----AYIYKDLIIALART 155 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~----~~~y~~li~~~~~~ 155 (256)
..+...|+.++|+..+.+.............+-..+...|++++|.+.|++..+..+ ..|+ ..+|..+-..|...
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 344455555555533322222223334444455555555555555555555443320 0111 34555555555555
Q ss_pred CCHHHHHHHHHHHHhCC------------------------CCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 025226 156 GKMNEAMQVWESMRKED------------------------LFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g------------------------~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p 210 (256)
|++++|.+.|++..+.. ..| +...|..+...|.+.|++++|.+.|++..+.. +.
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~ 171 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PE 171 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cc
Confidence 55555555555554411 122 23444555555555555555555555554432 11
Q ss_pred ChhHHHHHHHHhcCCCChHHHHH
Q 025226 211 EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 211 ~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+...|..+...|.+.|++++|.+
T Consensus 172 ~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 172 DARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCHHHHHH
Confidence 34445555555555555555555
No 46
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.66 E-value=1.7e-07 Score=81.70 Aligned_cols=226 Identities=14% Similarity=0.040 Sum_probs=147.7
Q ss_pred CCchHHHHHHHHHhcCCC------------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHH
Q 025226 10 KIPILASIVLQNLTKNPS------------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEAL 77 (256)
Q Consensus 10 ~~~~~A~~l~~~m~~~~~------------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 77 (256)
++.+.|.++++.+.+... +..+-..+...++...+ +..|+......+. ...+.
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A-----~~~~~~~~~~~~~----------~~~~~ 280 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA-----QVLLQESINLHPT----------PNSYI 280 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHCCC----------HHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH-----HHHHHHHHhcCCC----------chHHH
Confidence 366778888887765432 12222233445555666 7777766554321 13344
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
.+...+...|+.++|+..+.+......-.+... .+-..+...|++++|.+.|++..+.. ..+..+|..+...|...|
T Consensus 281 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g 358 (537)
T 3fp2_A 281 FLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQG 358 (537)
T ss_dssp HHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 556678889999999855543333222222222 47777888999999999999998875 456788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCChhHHHHHHHHhcCC------
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP-----DPPEELPFRILLKGLLPH------ 225 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g-----~~p~~~t~~~li~~~~~~------ 225 (256)
++++|.+.|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+.. .......+......|.+.
T Consensus 359 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 437 (537)
T 3fp2_A 359 KFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPT 437 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC---
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccch
Confidence 9999999999988742 2346688889999999999999999999887532 112222344445566666
Q ss_pred ----CChHHHHHhhh--hhcCCC-cccccchhHhh
Q 025226 226 ----PLLRSKVKKDF--EELFPE-KHAYDPPEEIF 253 (256)
Q Consensus 226 ----g~~~~a~~~~~--~~~~p~-~~~~~~li~~y 253 (256)
|++++|..... ....|+ ...|..+..+|
T Consensus 438 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 438 QLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88898888222 333454 34455555544
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.58 E-value=3.4e-06 Score=67.12 Aligned_cols=200 Identities=8% Similarity=-0.093 Sum_probs=145.6
Q ss_pred ccccCCchHHHHHHHHHhcCCC---ccccccccCC----CCCCCCcccCcccccccccccCCCCCCccccccccchhHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS---KNFSFLAFKP----KSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALF 78 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~---~~~ll~a~~~----~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 78 (256)
+-+.++.+.|.+.|+...+.+. +..+-..+.. .++...+ +..|++....+ ....+..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A-----~~~~~~a~~~~-----------~~~a~~~ 79 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKA-----ASFYAKACDLN-----------YSNGCHL 79 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH-----HHHHHHHHHTT-----------CHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHH-----HHHHHHHHHCC-----------CHHHHHH
Confidence 4456889999999998776554 2222223333 5555555 77777665442 1223333
Q ss_pred HHHHhhc----CCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 79 VILGLKR----FKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELER----QEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 79 ~i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
+-..|.. .++.++|+. +++.....+. +... .+=..+.. .+++++|.+.|++..+.+ +...+..+-
T Consensus 80 lg~~~~~g~~~~~~~~~A~~-~~~~a~~~~~-~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg 153 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQ-YYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILG 153 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHH-HHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHH-HHHHHHHcCC-ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHH
Confidence 4455666 899999985 4455555552 3322 46666777 899999999999998876 567788888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 150 IALAR----TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 150 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
..|.. .+++++|.+.|++..+.+ +...+..+-..|.+ .+++++|.+.|++..+.+. ...+..+-..
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~ 227 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAM 227 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHH
Confidence 88888 899999999999988863 56788888888999 9999999999999888753 5677777788
Q ss_pred hcC----CCChHHHHH
Q 025226 222 LLP----HPLLRSKVK 233 (256)
Q Consensus 222 ~~~----~g~~~~a~~ 233 (256)
|.+ .+++++|.+
T Consensus 228 ~~~g~~~~~~~~~A~~ 243 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIE 243 (273)
T ss_dssp HHTTSSSSCCSTTHHH
T ss_pred HHcCCCcccCHHHHHH
Confidence 887 889888888
No 48
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=6.3e-06 Score=67.08 Aligned_cols=180 Identities=12% Similarity=-0.034 Sum_probs=130.7
Q ss_pred cccccccccC-CCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCc-HH-HHHHHHHHcCCHHHH
Q 025226 50 ILGLRQYHDG-RPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMD-IV-AVLIELERQEETILA 125 (256)
Q Consensus 50 ~~~~~~m~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~-~li~~~~~~~~~~~a 125 (256)
..+|++.... .+.. ...|......+.+.|+.++|...+ +...+.. -.++ .. .+...+.+.|++++|
T Consensus 84 ~~~~~rAl~~~~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 84 ANIYERAISTLLKKN---------MLLYFAYADYEESRMKYEKVHSIY-NRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp HHHHHHHHTTTTTTC---------HHHHHHHHHHHHHTTCHHHHHHHH-HHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHhCccc---------HHHHHHHHHHHHhcCCHHHHHHHH-HHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence 8888777663 3222 235566677778899999998555 4554422 2233 22 577778889999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 126 VKIFDIIRKQDWYQPDAYIYKDLIIALA-RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~y~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
..+|++..+.. .++...|........ ..|+.++|.++|++..+.. +-+...|..++..+.+.|++++|..+|++..
T Consensus 154 ~~~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 230 (308)
T 2ond_A 154 RMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 230 (308)
T ss_dssp HHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999876 445555654433322 3699999999999987742 1267889999999999999999999999999
Q ss_pred hCC-CCC--ChhHHHHHHHHhcCCCChHHHHHhhh--hhcCCC
Q 025226 205 KSP-DPP--EELPFRILLKGLLPHPLLRSKVKKDF--EELFPE 242 (256)
Q Consensus 205 ~~g-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~--~~~~p~ 242 (256)
+.. +.| +...|..++..+.+.|+.+++..... ....|+
T Consensus 231 ~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 231 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 873 566 46688889999999999999887332 344565
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.56 E-value=1.2e-06 Score=71.33 Aligned_cols=177 Identities=11% Similarity=-0.049 Sum_probs=131.1
Q ss_pred hHHHHHHHHHhcC-CC-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcC
Q 025226 13 ILASIVLQNLTKN-PS-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRF 86 (256)
Q Consensus 13 ~~A~~l~~~m~~~-~~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 86 (256)
+.|.++|+...+. .. |..+...+.+.++.+.+ ..+|++.....+.. ....|......+.+.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A-----~~~~~~al~~~p~~--------~~~~~~~~~~~~~~~ 147 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV-----HSIYNRLLAIEDID--------PTLVYIQYMKFARRA 147 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHTSSSSC--------THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHhccccC--------ccHHHHHHHHHHHHh
Confidence 8999999987652 22 55666666667777777 89998887643321 011456667777889
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHHH-HHHHHH---HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIVA-VLIELE---RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAM 162 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~-li~~~~---~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~ 162 (256)
|+.++|...+ +...+..- ++... +-.+.. ..|+.++|..+|+...+.. .-+...|..++..+.+.|++++|.
T Consensus 148 ~~~~~A~~~~-~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 148 EGIKSGRMIF-KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HCHHHHHHHH-HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred cCHHHHHHHH-HHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999998544 45444321 12121 111222 3699999999999988774 558899999999999999999999
Q ss_pred HHHHHHHhCC-CCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 163 QVWESMRKED-LFP--DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 163 ~~~~~m~~~g-~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
.+|++..... +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999863 555 4678999999999999999999999998875
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.53 E-value=5.5e-06 Score=75.53 Aligned_cols=150 Identities=12% Similarity=0.042 Sum_probs=123.2
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 150 (256)
.+..+-..|.+.|+.++|+..+ +...+ +.|+.. .+=.++.+.|++++|++.|++..+.. .-+...|+.+-.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~-~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLY-RKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3444557788999999998655 44433 234432 47778889999999999999998886 557889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCCh
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPLL 228 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~ 228 (256)
.|...|++++|.+.|++..+. .| +...|+.+-..|.+.|++++|.+.|++..+. .| +...|..+...|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccH
Confidence 999999999999999998873 35 4688999999999999999999999998875 33 467888999999999999
Q ss_pred HHHHH
Q 025226 229 RSKVK 233 (256)
Q Consensus 229 ~~a~~ 233 (256)
++|.+
T Consensus 162 ~~A~~ 166 (723)
T 4gyw_A 162 TDYDE 166 (723)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 88877
No 51
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.52 E-value=6.7e-07 Score=77.61 Aligned_cols=199 Identities=11% Similarity=-0.059 Sum_probs=134.1
Q ss_pred hHHHHHHHHHhcCCC-----ccccccccCCCCCC-CCcccCcccccccccccCCCCCCccccccccchhHHHHHHHhhcC
Q 025226 13 ILASIVLQNLTKNPS-----KNFSFLAFKPKSPI-VDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRF 86 (256)
Q Consensus 13 ~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~~-~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 86 (256)
+.|++.+++...... |..+=..+...++. ..+ +..|++.....+.. ...+..+-..|.+.
T Consensus 85 ~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A-----~~~~~~al~~~p~~---------~~a~~~lg~~~~~~ 150 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEA-----EVLLSKAVKLEPEL---------VEAWNQLGEVYWKK 150 (474)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHH-----HHHHHHHHHHCTTC---------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHH-----HHHHHHHHhhCCCC---------HHHHHHHHHHHHHc
Confidence 344555555443332 33333445556666 666 77777665443222 23455556677888
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQ---------EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
|+.++|...+ +...+.. |+.. .+-..+... |++++|.+.|++..+.. .-+...|..+-.+|..
T Consensus 151 g~~~~A~~~~-~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~ 225 (474)
T 4abn_A 151 GDVTSAHTCF-SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLS 225 (474)
T ss_dssp TCHHHHHHHH-HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 8888887544 4444332 4432 255556667 88888888888888775 5567888888888888
Q ss_pred c--------CCHHHHHHHHHHHHhCCCCC----CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 155 T--------GKMNEAMQVWESMRKEDLFP----DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 155 ~--------g~~~~a~~~~~~m~~~g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
. |++++|.+.|++..+. .| +...|..+-..|.+.|++++|.+.|++..+.. .-+...+..+-..+
T Consensus 226 ~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 226 LYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 8 8888888888888773 35 67788888888888888989988888877652 12445677777778
Q ss_pred cCCCChHHHHH
Q 025226 223 LPHPLLRSKVK 233 (256)
Q Consensus 223 ~~~g~~~~a~~ 233 (256)
...|++++|++
T Consensus 303 ~~lg~~~eAi~ 313 (474)
T 4abn_A 303 EFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888776
No 52
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.52 E-value=1.6e-06 Score=68.55 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=117.6
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhc------cCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc-----CCC-
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLR------LLKMDIV----AVLIELERQEETILAVKIFDIIRKQ-----DWY- 138 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~-----~~~- 138 (256)
.+..+-..+...|+.++|+..+ +..... +-.|... .+-..+...|++++|.+.|.+..+. +.-
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLL-NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcccHHHHHHHH-HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4445567788999999998554 444332 2223322 3777888999999999999988765 101
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE------DLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----- 206 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----- 206 (256)
.....+|..+-..|...|++++|.+.|++..+. +-.| ...++..+-..|.+.|++++|.++|++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 234678889999999999999999999998764 1133 3567889999999999999999999987752
Q ss_pred -------------------------------------------CCCCChhHHHHHHHHhcCCCChHHHHHhh
Q 025226 207 -------------------------------------------PDPPEELPFRILLKGLLPHPLLRSKVKKD 235 (256)
Q Consensus 207 -------------------------------------------g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 235 (256)
.......++..+...|.+.|++++|.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 275 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLE 275 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11123346777888888999999888743
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.49 E-value=3.9e-06 Score=62.55 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=102.1
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+..+-..|.+.|+.++++..+........-.+... .+-..+...++++.|...+.+..+.. +-+...+..+-..|.
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~ 118 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYD 118 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHH
Confidence 444556778899999999865543333322222222 35567778999999999999998885 667889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
+.|++++|.+.|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9999999999999988742 135678999999999999999999999998875
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.48 E-value=1.9e-06 Score=69.26 Aligned_cols=159 Identities=10% Similarity=0.055 Sum_probs=117.5
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhc------cCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLR------LLKMDIV----AVLIELERQEETILAVKIFDIIRKQ------DWY 138 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~------~~~ 138 (256)
.+..+...+...|+.++|...+ +..... +-.|... .+-..+...|++++|...|++..+. +..
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 149 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLL-NDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3445567788899999998544 444332 2223222 4777888999999999999988765 211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE------DLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKS----- 206 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----- 206 (256)
.....++..+-..|...|++++|.+.|++..+. +-.|+ ..++..+...|.+.|++++|.+.|++..+.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 229 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 234567888899999999999999999998764 22333 467889999999999999999999988752
Q ss_pred -------------------------------------------CCCCChhHHHHHHHHhcCCCChHHHHHh
Q 025226 207 -------------------------------------------PDPPEELPFRILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 207 -------------------------------------------g~~p~~~t~~~li~~~~~~g~~~~a~~~ 234 (256)
.-..+..++..+...|.+.|++++|.+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 300 (311)
T 3nf1_A 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETL 300 (311)
T ss_dssp HC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1122446677888899999999999883
No 55
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.48 E-value=2.1e-06 Score=69.04 Aligned_cols=158 Identities=12% Similarity=0.068 Sum_probs=119.0
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhc----c--CCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc------CCC
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLR----L--LKMDIV----AVLIELERQEETILAVKIFDIIRKQ------DWY 138 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~----~--~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~------~~~ 138 (256)
.+..+...+...|+.++|+..+ +..... + -.|... .+-..+...|++++|...+++..+. +..
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~-~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLC-KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4455667888999999998544 444331 1 122222 3777788999999999999988765 211
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKE------DLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----- 206 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----- 206 (256)
.....+|..+...|...|++++|.+.|++..+. +-.| ....+..+-..|...|++++|.++|++..+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 334678899999999999999999999998763 2223 3567888999999999999999999998764
Q ss_pred -CCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 207 -PDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 207 -g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+-.| ...++..+...|...|++++|.+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 2233 34578889999999999999988
No 56
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.47 E-value=6.5e-06 Score=56.45 Aligned_cols=93 Identities=15% Similarity=0.230 Sum_probs=77.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+...+...|++++|.+.|++..+.. ..+..++..+...|.+.|++++|...|+++.+.. ..+..++..+...|.+.
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 90 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQ 90 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh
Confidence 36667788899999999999888775 5678888888999999999999999999887742 23667888888889999
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|++++|...|++..+.
T Consensus 91 ~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 91 GDYDEAIEYYQKALEL 106 (125)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988765
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.46 E-value=3.6e-05 Score=61.06 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=51.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----c
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR----TGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----D 190 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~ 190 (256)
.+++++|.+.|++..+.+ +...+..+-..|.. .+++++|.+.|++..+.+ +...+..+-..|.+ .
T Consensus 91 ~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred ccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCC
Confidence 455555555555554443 34445555555555 555555555555554432 33444444444444 4
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC----CCChHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP----HPLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~ 233 (256)
+++++|.+.|++..+.+ +...+..+-..|.. .+++++|++
T Consensus 164 ~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 164 KDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 55555555555544442 23444444444444 555555555
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.45 E-value=3e-05 Score=61.11 Aligned_cols=151 Identities=14% Similarity=0.042 Sum_probs=96.7
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQP--DAYIYKDLIIALARTG 156 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~~~g 156 (256)
-..+.+.|+.++|+..+.+......-.+... .+-..+...|++++|.+.|++..+.+ -.| ...+|..+-..|...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHcc
Confidence 4556677888888754433333222223222 46667778888888888888877643 222 2345777888888888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++++|.+.|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+.. ..+...|..+-..+...+++++|.+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777632 1245677788888888888888888888776651 2234455555513333447777777
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.45 E-value=5.6e-06 Score=71.76 Aligned_cols=165 Identities=10% Similarity=-0.024 Sum_probs=127.4
Q ss_pred hHHHHHHHhhcCCCc-HHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDD-EEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+..+-..+...|+. ++|+..+.+......-.++.. .+-..|.+.|++++|.+.|++..+.. |+...|..+-..|
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~lg~~~ 180 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQNLSMVL 180 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHH
Confidence 344445677889999 999865543333322222222 47778889999999999999998764 7789999999999
Q ss_pred Hhc---------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--------CChhHHHHHHHHHHhCCCC--CChh
Q 025226 153 ART---------GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD--------GSPADAMNIYEDMIKSPDP--PEEL 213 (256)
Q Consensus 153 ~~~---------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------g~~~~a~~~~~~M~~~g~~--p~~~ 213 (256)
... |++++|.+.|++..+.. .-+...|..+-..|... |++++|.+.|++..+..-. -+..
T Consensus 181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 259 (474)
T 4abn_A 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPD 259 (474)
T ss_dssp TTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHH
T ss_pred HHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHH
Confidence 999 99999999999988742 12578899999999998 9999999999998875210 3788
Q ss_pred HHHHHHHHhcCCCChHHHHHh--hhhhcCCCc
Q 025226 214 PFRILLKGLLPHPLLRSKVKK--DFEELFPEK 243 (256)
Q Consensus 214 t~~~li~~~~~~g~~~~a~~~--~~~~~~p~~ 243 (256)
.|..+-..|...|++++|.+. ....+.|+.
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 899999999999999999993 333445653
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.37 E-value=2.9e-05 Score=59.83 Aligned_cols=146 Identities=14% Similarity=0.015 Sum_probs=111.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
+...-..+.+.|+.++|+..+ +......-.++.. .+-.++...|++++|.+.|++..+.. +-+..+|..+-..|
T Consensus 10 ~~~~g~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 10 LKNEGNDALNAKNYAVAFEKY-SEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-HHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHH-HHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHHHHHH
Confidence 344456678899999998555 4444433223333 36667788999999999999999875 45778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-H-------hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---hhHHHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPD-S-------QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE---ELPFRILLKG 221 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~-~-------~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~---~~t~~~li~~ 221 (256)
...|++++|.+.|++..+. .|+ . ..|..+=..+.+.|++++|.+.|++..+. .|+ ...|..+-..
T Consensus 87 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHH
Confidence 9999999999999998874 344 3 45677777788899999999999998876 454 4667777777
Q ss_pred hcCCCCh
Q 025226 222 LLPHPLL 228 (256)
Q Consensus 222 ~~~~g~~ 228 (256)
|...|..
T Consensus 163 ~~~~~~~ 169 (228)
T 4i17_A 163 FYNNGAD 169 (228)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
No 61
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.30 E-value=1.6e-05 Score=72.51 Aligned_cols=136 Identities=15% Similarity=0.107 Sum_probs=112.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~ 190 (256)
+=..+.+.|++++|++.|++..+.. .-+..+|+.+-..|.+.|++++|.+.|++..+. .|+ ...|+.+-..|.+.
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~ 90 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 90 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 6667888999999999999998885 557899999999999999999999999998874 454 68899999999999
Q ss_pred CChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCChHHHHHh--hhhhcCCCc-ccccchhHhh
Q 025226 191 GSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPLLRSKVKK--DFEELFPEK-HAYDPPEEIF 253 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~--~~~~~~p~~-~~~~~li~~y 253 (256)
|++++|.+.|++..+. .| +...|+.+-..|.+.|++++|++. ..-.+.|+. ..|..+..+|
T Consensus 91 g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 91 QDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 9999999999998865 23 467899999999999999999993 334455653 3444454444
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.27 E-value=2.3e-06 Score=72.16 Aligned_cols=198 Identities=11% Similarity=0.081 Sum_probs=124.9
Q ss_pred ccccCCchHHHHHHHHHhcCCC-----ccccccccCCCCC-CCCcccCcccccccccccCCCCCCccccccccchhHHHH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS-----KNFSFLAFKPKSP-IVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEALFV 79 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~-----~~~ll~a~~~~~~-~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~ 79 (256)
+.+.|+.+.|++.++...+..- |+.+-..+...++ ...+ +..|++.....+.. ...|..+
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eA-----l~~~~~al~l~P~~---------~~a~~~~ 172 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEE-----MNYITAIIEEQPKN---------YQVWHHR 172 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH-----HHHHHHHHHHCTTC---------HHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHH-----HHHHHHHHHHCCCC---------HHHHHHH
Confidence 3456778888888887543221 4444444555554 6666 77777666544332 2334444
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR- 154 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~- 154 (256)
-..+.+.|+.++|+..+ +..... .|+.. .+-.++.+.|++++|+..|+++.+.. .-+...|+.+-..|.+
T Consensus 173 g~~~~~~g~~~eAl~~~-~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFI-ADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHTCCTTHHHHH-HHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHH-HHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHh
Confidence 45566778888887444 444332 23222 35556667788888888888888776 5577888888888888
Q ss_pred cCCHHHH-----HHHHHHHHhCCCCC-CHhhHHHHHHHHHHcC--ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 155 TGKMNEA-----MQVWESMRKEDLFP-DSQTYTEVIRGFLKDG--SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 155 ~g~~~~a-----~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g--~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
.|..++| .+.|++..+. .| +...|+.+-..|.+.| +.++|.+.+.++ ..-..+...+..+...|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHh
Confidence 5554666 4667766652 34 4567777777777777 578888888777 222345566777777777653
No 63
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.26 E-value=2.5e-05 Score=69.09 Aligned_cols=118 Identities=10% Similarity=-0.107 Sum_probs=63.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+-..+...|++++|.+.|++..+.. .-+...|..+-..|...|++++|.+.|++..+.. ..+...|..+-..|.+.|
T Consensus 29 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g 105 (568)
T 2vsy_A 29 LADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAG 105 (568)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 4444455566666666666555543 3345555555556666666666666666555421 113445555555566666
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC---CChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH---PLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~ 233 (256)
++++|.+.|++..+.. .-+...+..+...+... |+.++|.+
T Consensus 106 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 106 QAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 6666666666555431 11334455555555555 55555555
No 64
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.24 E-value=2.3e-06 Score=67.66 Aligned_cols=193 Identities=10% Similarity=-0.005 Sum_probs=126.3
Q ss_pred cccCCchHHHHHHHHHhc-------CC-C-----ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccc
Q 025226 7 SRSKIPILASIVLQNLTK-------NP-S-----KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIG 73 (256)
Q Consensus 7 ~~~~~~~~A~~l~~~m~~-------~~-~-----~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 73 (256)
...|+++.|.+++++..+ .. . +..+-..+...++...+ +..|++.......... .......
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~~~~~~-~~~~~~~ 85 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEA-----AHLLNDALAIREKTLG-KDHPAVA 85 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHHHTC-TTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHH-----HHHHHHHHHHHHHHcC-CcchHHH
Confidence 445667777666665332 22 1 55555566667777777 7777665533100000 0000112
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhc------cCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc-----CCC
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLR------LLKMDIV----AVLIELERQEETILAVKIFDIIRKQ-----DWY 138 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~-----~~~ 138 (256)
..+..+-..+...|+.++|+..+. ..... .-.|+.. .+-..+...|++++|...|++..+. +.-
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~-~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCK-RALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHH-HHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556678889999999985553 43322 1123322 3677788999999999999998765 101
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----------------------------------------------
Q 025226 139 QP-DAYIYKDLIIALARTGKMNEAMQVWESMRKE---------------------------------------------- 171 (256)
Q Consensus 139 ~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------------------- 171 (256)
.| ...++..+-..|...|++++|.+.|++..+.
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 22 3578889999999999999999999988752
Q ss_pred --CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 172 --DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 172 --g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
....+..++..+-..|.+.|++++|..+|++..+.
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 01112456888999999999999999999987653
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.24 E-value=5.8e-05 Score=60.88 Aligned_cols=155 Identities=14% Similarity=-0.022 Sum_probs=111.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhh---ccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC--CHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWY--QP--DAYIYKDL 148 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~--~p--~~~~y~~l 148 (256)
...|...|+.++|+..+.+.... .+-.++.. .+-..|.+.|++++|+..|++..+...- .+ -..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999998655433322 22222211 3677788999999999999977644200 11 14688889
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChh------HHH
Q 025226 149 IIALART-GKMNEAMQVWESMRKE----DLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL------PFR 216 (256)
Q Consensus 149 i~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~------t~~ 216 (256)
-..|... |++++|.+.|++..+. +-.+. ..+|+.+-..|.+.|++++|.+.|++..+........ .|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 9999999999988762 11001 3578899999999999999999999998764332221 567
Q ss_pred HHHHHhcCCCChHHHHHh
Q 025226 217 ILLKGLLPHPLLRSKVKK 234 (256)
Q Consensus 217 ~li~~~~~~g~~~~a~~~ 234 (256)
.+..++...|++++|...
T Consensus 204 ~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHH
Confidence 778889999999999983
No 66
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.24 E-value=4e-05 Score=58.23 Aligned_cols=126 Identities=13% Similarity=-0.072 Sum_probs=98.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
..-..+...|+.++|+..+ +.. +.|+.. .+-..+.+.|++++|...|++..+.. ..+...|..+-..|..
T Consensus 11 ~~g~~~~~~~~~~~A~~~~-~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAF-SAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHH-HHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence 3455677889999998544 333 344443 46777888999999999999988875 5678899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCC--------------CC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh
Q 025226 155 TGKMNEAMQVWESMRKEDL--------------FP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE 212 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~--------------~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~ 212 (256)
.|++++|.+.|++..+..- .| +...|..+-..|.+.|++++|.+.|++..+. .|+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 9999999999999887421 11 1267888888999999999999999998876 4665
No 67
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.23 E-value=6.1e-05 Score=52.78 Aligned_cols=97 Identities=15% Similarity=0.167 Sum_probs=80.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
.=+.+.+.|++++|++.|++..+.. +.+..+|..+-.+|.+.|++++|.+.|++..+.. +.+...|..+-..|...|
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCC
Confidence 4456788999999999999988886 6688899999999999999999999999888742 124678888889999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChh
Q 025226 192 SPADAMNIYEDMIKSPDPPEEL 213 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~ 213 (256)
++++|.+.|++..+. .|+..
T Consensus 96 ~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 96 EWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTCH
T ss_pred CHHHHHHHHHHHHHH--CcCCH
Confidence 999999999988765 35433
No 68
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.23 E-value=1.3e-05 Score=58.01 Aligned_cols=135 Identities=11% Similarity=-0.016 Sum_probs=99.5
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHH
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMN 159 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~ 159 (256)
...|+.++|+..+. ... ...|+.. .+=..|.+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~-~a~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQ-GST--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHH-HHS--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHH-Hhc--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCchH
Confidence 44566777775443 221 1223222 46677889999999999999999886 568899999999999999999
Q ss_pred HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHH-HHHHHhCCCCC-ChhHHHHHHHHhcCCCC
Q 025226 160 EAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNI-YEDMIKSPDPP-EELPFRILLKGLLPHPL 227 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~-~~~M~~~g~~p-~~~t~~~li~~~~~~g~ 227 (256)
+|...|++..+. .| +...|..+-..|.+.|+.++|.+. +++..+. .| +...|...-..+...|+
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 999999998873 36 467888999999999999877665 5766654 34 45566666666656554
No 69
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.23 E-value=6.1e-05 Score=63.43 Aligned_cols=150 Identities=5% Similarity=-0.014 Sum_probs=119.1
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEE-TILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
.+..+-..+.+.|+.++|+..+ +.... +.|+.. .+-..+...|+ +++|+..|++..+.. .-+...|+.+-
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~-~~al~--l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g 173 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLT-RDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHH-HHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHH-HHHHH--hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHH
Confidence 4445556778899999998655 44433 234433 35666778896 999999999999886 66889999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC-CCC
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP-HPL 227 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~-~g~ 227 (256)
..|...|++++|...|++..+. .| +...|..+-..+.+.|++++|++.|+++.+... -+...|+.+-..|.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999884 34 678899999999999999999999999987632 256788888888888 666
Q ss_pred hHHHH
Q 025226 228 LRSKV 232 (256)
Q Consensus 228 ~~~a~ 232 (256)
.++|+
T Consensus 251 ~~eA~ 255 (382)
T 2h6f_A 251 NDRAV 255 (382)
T ss_dssp CSHHH
T ss_pred chHHH
Confidence 56663
No 70
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.21 E-value=4.3e-05 Score=52.67 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+-..+...|++++|...|++..+.. ..+...|..+...|...|++++|.+.+++..+.. ..+...|..+-..|.+.
T Consensus 17 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 17 TEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHh
Confidence 35566777888888888888887774 5577888888888888899999988888877642 22467778888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 191 GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
|++++|...|++..+.. ..+...+..+...+.+.|+
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 89999988888877652 1244556666666655544
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.20 E-value=4.1e-05 Score=58.51 Aligned_cols=159 Identities=8% Similarity=0.031 Sum_probs=108.1
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----H----------------HHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----A----------------VLIELERQEETILAVKIFDIIRKQDWYQ 139 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~----------------li~~~~~~~~~~~a~~~~~~m~~~~~~~ 139 (256)
-..+.+.|+.++|+..+. ..... .|+.. . +-.++.+.|++++|...|++..+.. +
T Consensus 11 g~~~~~~g~~~~A~~~~~-~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p 85 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFR-QTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA--P 85 (208)
T ss_dssp HHHHHHTTCHHHHHHHHH-HHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHCCCHHHHHHHHH-HHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C
Confidence 455678999999986554 43322 23322 2 5567788999999999999999886 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCChhH--
Q 025226 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGS--PADAMNIYEDMIKSPDPPEELP-- 214 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~--~~~a~~~~~~M~~~g~~p~~~t-- 214 (256)
-+...|..+-..|...|++++|.+.|++..+. .| +...|..+-..|...|+ .+.+...+.... .|+...
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a 159 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKMQYA 159 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCchhHH
Confidence 68899999999999999999999999999874 35 46778777777766553 344555555543 344333
Q ss_pred HHHHHHHhcCCCChHHHHHh--hhhhcCCCcccccch
Q 025226 215 FRILLKGLLPHPLLRSKVKK--DFEELFPEKHAYDPP 249 (256)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~--~~~~~~p~~~~~~~l 249 (256)
+...-.++...|++++|+.. ..-.+.|+......+
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l 196 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 33333445557889999883 334556765444433
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.19 E-value=8.8e-05 Score=57.10 Aligned_cols=123 Identities=9% Similarity=-0.004 Sum_probs=101.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
.=..+...|++++|.+.|++..+.. ..++...+..+-.+|...|++++|.+.|++..+. .| +...|..+-..|.+.
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~ 89 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDM 89 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHc
Confidence 4556778999999999999999886 2378888888999999999999999999998874 35 457888999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCC-h-------hHHHHHHHHhcCCCChHHHHHhhhhhc
Q 025226 191 GSPADAMNIYEDMIKSPDPPE-E-------LPFRILLKGLLPHPLLRSKVKKDFEEL 239 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~~p~-~-------~t~~~li~~~~~~g~~~~a~~~~~~~~ 239 (256)
|++++|.+.|++..+.. |+ . ..|..+-..+...|++++|++...+-+
T Consensus 90 ~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 90 KNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 99999999999988752 33 3 457777788889999999999444333
No 73
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.19 E-value=0.00015 Score=58.95 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=87.8
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccC---CCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----CHHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLL---KMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQP-----DAYIYKDL 148 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~y~~l 148 (256)
.+-..+...|+.++|+..+ ......+- .+... .++..+.+.|+++.|.+.+++|.+. .| +..+...+
T Consensus 105 ~la~i~~~~g~~eeAL~~l-~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---~~d~~~~~d~~l~~L 180 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETC-VEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---IEDTVSGDNEMILNL 180 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-HHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CccccccchHHHHHH
Confidence 4456667778888887433 34333331 11222 3677888888888888888888765 35 35555666
Q ss_pred HHHHHh--cC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----CC----CCChhHH
Q 025226 149 IIALAR--TG--KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS-----PD----PPEELPF 215 (256)
Q Consensus 149 i~~~~~--~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~-----g~----~p~~~t~ 215 (256)
..+++. .| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+. +. .-|..+.
T Consensus 181 aea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~L 258 (310)
T 3mv2_B 181 AESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFL 258 (310)
T ss_dssp HHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHH
Confidence 656333 23 788888888887664 244334444555777888888888888866542 11 2355555
Q ss_pred HHHHHHhcCCCC
Q 025226 216 RILLKGLLPHPL 227 (256)
Q Consensus 216 ~~li~~~~~~g~ 227 (256)
-.+|......|+
T Consensus 259 aN~i~l~~~lgk 270 (310)
T 3mv2_B 259 ANQITLALMQGL 270 (310)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCh
Confidence 344444444454
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.19 E-value=0.00034 Score=52.91 Aligned_cols=116 Identities=9% Similarity=-0.028 Sum_probs=97.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+-..+...|++++|...|++.. .|+...|..+-..|...|++++|.+.|++..+.. ..+...|..+-..|.+.|
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 4556778999999999998763 5688999999999999999999999999988743 236788999999999999
Q ss_pred ChhHHHHHHHHHHhCCC--------------CC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPD--------------PP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~--------------~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++++|.+.|++..+..- .| +...+..+-..|.+.|++++|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999887521 11 22677888899999999999988
No 75
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.17 E-value=6.4e-05 Score=50.31 Aligned_cols=91 Identities=9% Similarity=0.002 Sum_probs=69.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP---DSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~ 188 (256)
+-..+...|++++|...|++..+.. ..+...|..+-..|...|++++|.+.|++..+.. | +...|..+-..|.
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADALR 87 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHHHH
Confidence 5556667788888888888877775 5567778888888888888888888888877642 3 4677777778888
Q ss_pred Hc-CChhHHHHHHHHHHhC
Q 025226 189 KD-GSPADAMNIYEDMIKS 206 (256)
Q Consensus 189 ~~-g~~~~a~~~~~~M~~~ 206 (256)
+. |++++|.+.|.+..+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGG
T ss_pred HHhCCHHHHHHHHHHHhhc
Confidence 88 8888888888887765
No 76
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=3.2e-05 Score=56.05 Aligned_cols=118 Identities=13% Similarity=0.063 Sum_probs=75.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+-..+...|++++|...|++..+.. ..+..+|..+-..|...|++++|.+.|++..+.. ..+...|..+-..|.+.|
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 4455566777777777777776664 4567777777777777777777777777766532 124566777777777777
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHH--HHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFR--ILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~--~li~~~~~~g~~~~a~~ 233 (256)
++++|.+.|++..+... .+...+. .....+.+.|++++|++
T Consensus 96 ~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~ 138 (166)
T 1a17_A 96 KFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIA 138 (166)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777665421 1223332 23333556677777766
No 77
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.15 E-value=2.5e-05 Score=74.73 Aligned_cols=109 Identities=8% Similarity=0.080 Sum_probs=58.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
..++..+.+.|+.++++ .++.+..+..-.|.+. .+..+|++.+++++.... . . .|+...|..+=..|-..
T Consensus 1138 ~eVa~~~~~lGkyEEAI-eyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I-~---~~n~ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1138 MEVVQAANTSGNWEELV-KYLQMARKKARESYVETELIFALAKTNRLAELEEF----I-N---GPNNAHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----H-h---CCCHHHHHHHHHHHHhc
Confidence 33455556666666665 3333333222111111 255555555555532222 1 1 23445555555566666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
|++++|..+|... ..|..+...|++.|++++|.+.+++-
T Consensus 1209 g~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 6666666666663 36777777777777777777776554
No 78
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.15 E-value=2.3e-05 Score=58.12 Aligned_cols=149 Identities=12% Similarity=0.010 Sum_probs=105.8
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA- 151 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~- 151 (256)
...-..+.+.|+.++|+..+ +...+ ..|+.. .+-..+...|++++|...|+...+.. |+...+..+...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~-~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVI-QTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHH-HTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHH-HHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHH
Confidence 34456678899999998544 33322 223322 46777889999999999999987765 355444332211
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCChH
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~~ 229 (256)
+...+...+|...|++..+. .| +...+..+-..|.+.|++++|...|++..+....+ +...+..+...|...|+.+
T Consensus 84 ~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 22222334578888887763 35 47888899999999999999999999998875433 3568889999999999998
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
+|+.
T Consensus 162 ~A~~ 165 (176)
T 2r5s_A 162 AIAS 165 (176)
T ss_dssp HHHH
T ss_pred cHHH
Confidence 8877
No 79
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.13 E-value=0.00014 Score=52.52 Aligned_cols=126 Identities=16% Similarity=0.027 Sum_probs=93.3
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+..+-..+...|+.++|+..+.+......-.+... .+-..+...|++++|...|++..+.. ..+..+|..+-..|.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 344455677889999999865544333222222222 46677888999999999999998885 567889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHhhHH--HHHHHHHHcCChhHHHHHHHHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFP-DSQTYT--EVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~--~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
..|++++|.+.|++..+.. | +...+. .+...+.+.|++++|.+.+.+..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 9999999999999988742 3 344443 34444778899999999988754
No 80
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.12 E-value=0.00012 Score=50.48 Aligned_cols=106 Identities=12% Similarity=0.175 Sum_probs=82.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HhhHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPD----SQTYTEVI 184 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~li 184 (256)
.+-..+...|++++|...|++..+.. ..+...|..+-..|...|++++|...|++..+.. ..++ ...|..+-
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 35566778899999999999988775 5678888899999999999999999999887642 1222 67788888
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 185 RGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
..|.+.|++++|.+.|++..+. .|+......+-.
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 8899999999999999988875 355555544443
No 81
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.12 E-value=0.00014 Score=57.20 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=116.0
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCC---cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKM---DIV-AVLIELERQEETILAVKIFDIIRKQDWYQPD-AYIYKDL 148 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~---~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 148 (256)
.+...-..+.+.|+.++|+..+ +...... -.| +.. .+-.++.+.|++++|...|+...+..+-.|. ...+..+
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~-~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 95 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYF-KAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYER 95 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHH-HHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHH
Confidence 3344456778999999998555 5554432 221 111 3667788999999999999999987411223 4567777
Q ss_pred HHHHHh--------cCCHHHHHHHHHHHHhCCCCCCH-hhH-----------------HHHHHHHHHcCChhHHHHHHHH
Q 025226 149 IIALAR--------TGKMNEAMQVWESMRKEDLFPDS-QTY-----------------TEVIRGFLKDGSPADAMNIYED 202 (256)
Q Consensus 149 i~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~t~-----------------~~li~~~~~~g~~~~a~~~~~~ 202 (256)
-.+|.. .|++++|...|++..+. .|+. ..+ -.+-..|.+.|++++|...|++
T Consensus 96 g~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 96 AMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 778888 99999999999998874 2442 333 3456778899999999999999
Q ss_pred HHhCCCC-C-ChhHHHHHHHHhcCC----------CChHHHHHh--hhhhcCCCc
Q 025226 203 MIKSPDP-P-EELPFRILLKGLLPH----------PLLRSKVKK--DFEELFPEK 243 (256)
Q Consensus 203 M~~~g~~-p-~~~t~~~li~~~~~~----------g~~~~a~~~--~~~~~~p~~ 243 (256)
..+.... | ....+..+..+|... |++++|+.. ......|+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 9875321 1 234667777777765 888888882 334445664
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.09 E-value=0.00028 Score=56.84 Aligned_cols=161 Identities=10% Similarity=-0.004 Sum_probs=108.5
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhh---ccCCCcHH----HHHHHHHHc-CCHHHHHHHHHHHHhcCCCCCC----H
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIV----AVLIELERQ-EETILAVKIFDIIRKQDWYQPD----A 142 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~----~li~~~~~~-~~~~~a~~~~~~m~~~~~~~p~----~ 142 (256)
.+..+-..|.+.|+.++|+..+.+.... .|-.+... .+-..|... |++++|+..|++..+...-..+ .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 4445567788999999998544333221 12111111 356667775 9999999999987754200111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-----
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ------TYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE----- 211 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~----- 211 (256)
.+|+.+-..|.+.|++++|.+.|++..+........ .|..+...|...|++++|...|++..+. .|+
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 578899999999999999999999998853222221 5677888899999999999999998764 222
Q ss_pred -hhHHHHHHHHhc--CCCChHHHHHhhhh
Q 025226 212 -ELPFRILLKGLL--PHPLLRSKVKKDFE 237 (256)
Q Consensus 212 -~~t~~~li~~~~--~~g~~~~a~~~~~~ 237 (256)
...+..++..|. ..+++++|++....
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 123445666664 55678888884433
No 83
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.08 E-value=0.00022 Score=57.31 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=111.2
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCC--HHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDW--YQPD--AYIY 145 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~--~~~y 145 (256)
...+..+...|+.++|++.+.+........++.. .+-..+...|++++|...|++..+... ..+. ..+|
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3456778899999999865544333322222221 134445677899999999998875420 1122 5589
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCC-----HhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-ChhH
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKE-DLFPD-----SQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPP-EELP 214 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p-~~~t 214 (256)
+.+-..|...|++++|...|++..+. ...|+ ..+|+.+-..|.+.|++++|.+.+++..+. +..+ -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 99999999999999999999988731 11122 258889999999999999999999987643 2222 2567
Q ss_pred HHHHHHHhcCCCChHHH
Q 025226 215 FRILLKGLLPHPLLRSK 231 (256)
Q Consensus 215 ~~~li~~~~~~g~~~~a 231 (256)
|..+-..|.+.|+.++|
T Consensus 239 ~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHcCCcHHH
Confidence 88889999999999999
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.07 E-value=0.00031 Score=47.70 Aligned_cols=108 Identities=12% Similarity=0.085 Sum_probs=79.3
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+..+...+...|+.++|...+ +...... -.+... .+...+.+.|++++|...|+++.+.. ..+..++..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYY-QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHH-HHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHH
Confidence 3445567788999999998555 4444332 112222 47788889999999999999999885 66889999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGF 187 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~ 187 (256)
...|++++|.+.|++..+.. |+ ...+..+-..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHH
Confidence 99999999999999988742 43 34444443333
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.07 E-value=7.8e-05 Score=54.17 Aligned_cols=91 Identities=12% Similarity=0.029 Sum_probs=80.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
+=..+.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|.+.|++..+. .| +...|..+-.+|.+.
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHc
Confidence 5566778999999999999999886 668899999999999999999999999998874 35 467888899999999
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|++++|...|++..+.
T Consensus 118 g~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 118 KAPLKAKECFELVIQH 133 (151)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998876
No 86
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.06 E-value=0.00024 Score=57.15 Aligned_cols=154 Identities=11% Similarity=0.023 Sum_probs=112.1
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhh-ccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHH
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVL-RLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDWYQPD----AYIYK 146 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~ 146 (256)
.+..+.+.++.++|...+ +.... ....|+.. .+-..+...+++++|...|++..+...-.++ ..+|+
T Consensus 81 ~i~~~~~~~~y~~a~~~~-~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKV-WNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHH-HHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 467788999999998554 44433 33333322 2444455667999999999998874312233 34799
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCCC-hhHH
Q 025226 147 DLIIALARTGKMNEAMQVWESMRK----E-DLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIK----SPDPPE-ELPF 215 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~----~g~~p~-~~t~ 215 (256)
.+-..|...|++++|...|++..+ . +..|.. .+|..+-..|.+.|++++|.+.+++..+ .+-.+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999884 1 222222 4788999999999999999999997764 233333 5778
Q ss_pred HHHHHHhcCCC-ChHHHHH
Q 025226 216 RILLKGLLPHP-LLRSKVK 233 (256)
Q Consensus 216 ~~li~~~~~~g-~~~~a~~ 233 (256)
..+-..|.+.| .+++|.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~ 258 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHH
Confidence 88888999999 4688887
No 87
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.06 E-value=7.5e-05 Score=51.76 Aligned_cols=92 Identities=15% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+-..+...|++++|...|++..+.. ..+...|..+-..|...|++++|.+.|++..+.. ..+...|..+-..|.+.|
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 98 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMK 98 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHh
Confidence 4445556666666666666666553 3456666666666666667777776666665531 124556666666666667
Q ss_pred ChhHHHHHHHHHHhC
Q 025226 192 SPADAMNIYEDMIKS 206 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~ 206 (256)
++++|.+.|++..+.
T Consensus 99 ~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 99 DYTKAMDVYQKALDL 113 (133)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777666665543
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.05 E-value=0.00018 Score=63.49 Aligned_cols=143 Identities=11% Similarity=-0.043 Sum_probs=102.7
Q ss_pred cccccccccCCCCCCccccccccchhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcH---H-HHHHHHHHcCCHHHH
Q 025226 50 ILGLRQYHDGRPRGSLWRGKKLIGKEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDI---V-AVLIELERQEETILA 125 (256)
Q Consensus 50 ~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~-~li~~~~~~~~~~~a 125 (256)
+..|++.....+.. ...+..+-..+.+.|+.++|...+ +...+. .|+. . .+-..+...|++++|
T Consensus 9 ~~~~~~al~~~p~~---------~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 9 LLQLRAAVRHRPQD---------FVAWLMLADAELGMGDTTAGEMAV-QRGLAL--HPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ------------CC---------HHHHHHHHHHHHHHTCHHHHHHHH-HHHHTT--STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHH-HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66666554433221 234445566778899999998555 444332 2332 2 467778899999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---CChhHHHHHHHH
Q 025226 126 VKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD---GSPADAMNIYED 202 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~ 202 (256)
.+.|++..+.. .-+...|..+-..|.+.|++++|.+.|++..+.. ..+...+..+...|... |+.++|.+.+++
T Consensus 77 ~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 77 AVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999886 5678899999999999999999999999988742 12567888999999999 999999999999
Q ss_pred HHhCC
Q 025226 203 MIKSP 207 (256)
Q Consensus 203 M~~~g 207 (256)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 88653
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.05 E-value=8.2e-05 Score=60.51 Aligned_cols=119 Identities=9% Similarity=0.043 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHhhHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-----DSQTYTEVIR 185 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~ 185 (256)
.+-.++...|++++|++++.+....+.-.-+...+-.++..|.+.|+.+.|.+.+++|.+. .| +..+...|..
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Lae 182 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAE 182 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHH
Confidence 4667788899999999999998766511247788889999999999999999999999874 46 3667777777
Q ss_pred HHHH--cC--ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 186 GFLK--DG--SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 186 ~~~~--~g--~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++.. .| +.++|..+|+++.+. .|+..+-..++.++.+.|++++|-+
T Consensus 183 a~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 183 SYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQG 232 (310)
T ss_dssp HHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHH
Confidence 7443 34 899999999999776 3554555666668999999999988
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.04 E-value=0.0008 Score=51.80 Aligned_cols=151 Identities=12% Similarity=0.118 Sum_probs=105.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhc-cCCCc---HH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH-HHHHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLR-LLKMD---IV-AVLIELERQEETILAVKIFDIIRKQDWYQPDA-YIYKDLIIA 151 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~---~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~ 151 (256)
..-..+.+.|+.++|+..| +..... .-.|. .. .+-.++.+.|++++|...|++..+..+-.+.. ..+-.+-.+
T Consensus 9 ~~a~~~~~~g~~~~A~~~~-~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 9 ATAQQKLQDGNWRQAITQL-EALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHH-HHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-HHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 3455678899999998655 444432 22232 12 47788899999999999999998875222322 133333333
Q ss_pred HHh------------------cCCHHHHHHHHHHHHhCCCCCCHh-hH-----------------HHHHHHHHHcCChhH
Q 025226 152 LAR------------------TGKMNEAMQVWESMRKEDLFPDSQ-TY-----------------TEVIRGFLKDGSPAD 195 (256)
Q Consensus 152 ~~~------------------~g~~~~a~~~~~~m~~~g~~p~~~-t~-----------------~~li~~~~~~g~~~~ 195 (256)
+.. .|+.++|...|++..+. .|+.. .+ -.+-..|.+.|++++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~ 165 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA 165 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 333 57899999999999874 35432 22 234456788999999
Q ss_pred HHHHHHHHHhCCCCCC----hhHHHHHHHHhcCCCChHHHHH
Q 025226 196 AMNIYEDMIKSPDPPE----ELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 196 a~~~~~~M~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|...|++..+.- |+ ...+..+..+|.+.|+.++|.+
T Consensus 166 A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 166 VVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp HHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 999999998762 33 2568889999999999999988
No 91
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=8.1e-05 Score=52.16 Aligned_cols=102 Identities=13% Similarity=0.085 Sum_probs=79.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCC----HhhHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED--LFPD----SQTYTEVIR 185 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~----~~t~~~li~ 185 (256)
+=+.+.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|++..+.. ..++ ..+|..+=.
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 5567888999999999999988885 5678899999999999999999999999887531 1122 135666777
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCChhHHHH
Q 025226 186 GFLKDGSPADAMNIYEDMIKSPDPPEELPFRI 217 (256)
Q Consensus 186 ~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~ 217 (256)
.|...|++++|.+.|++-.+. .||..+...
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 788899999999999987664 456554443
No 92
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.02 E-value=8.8e-05 Score=54.72 Aligned_cols=119 Identities=8% Similarity=0.054 Sum_probs=86.5
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA-LARTGKM--N 159 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~-~~~~g~~--~ 159 (256)
...|+.++|+..+.+......-.++.. .+-..+...|++++|...|++..+.. ..+...|..+-.. |...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 455666666644433332222222222 46677888999999999999998875 5577888888888 7789998 9
Q ss_pred HHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 160 EAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
+|...|++..+.. | +...|..+-..|.+.|++++|...|++..+.
T Consensus 99 ~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALD--SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 9999999988742 4 4677888888999999999999999998876
No 93
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.00 E-value=5.2e-05 Score=55.98 Aligned_cols=125 Identities=6% Similarity=0.060 Sum_probs=95.4
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCh-
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRG-FLKDGSP- 193 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~- 193 (256)
+...|++++|...++...+.. ..+...|..+-..|...|++++|...|++..+.. ..+...|..+-.. |.+.|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 345688899999999988775 5688999999999999999999999999988742 1256677777777 7789998
Q ss_pred -hHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHHh--hhhhcCCCcc
Q 025226 194 -ADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVKK--DFEELFPEKH 244 (256)
Q Consensus 194 -~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~--~~~~~~p~~~ 244 (256)
++|...|++..+.. .-+...+..+...|...|++++|... ......|+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999988763 22467788888999999999999983 3334455543
No 94
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=0.00015 Score=51.56 Aligned_cols=92 Identities=16% Similarity=0.046 Sum_probs=75.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++..+.. +.+...|..+-..|...|
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 4556778899999999999988876 5678888888889999999999999999888742 124567778888888999
Q ss_pred ChhHHHHHHHHHHhC
Q 025226 192 SPADAMNIYEDMIKS 206 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~ 206 (256)
++++|.+.|++..+.
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999887754
No 95
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.99 E-value=0.00054 Score=45.99 Aligned_cols=93 Identities=14% Similarity=0.033 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+-..+...|++++|...|+...+.. +.+...|..+-..|...|++++|.+.+++..+.. +.+...|..+-..|.+.
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 35566778899999999999888775 5578888888888889999999999998887642 12567788888888899
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|++++|.+.|++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 9999999999888765
No 96
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.99 E-value=0.0002 Score=49.59 Aligned_cols=91 Identities=19% Similarity=0.097 Sum_probs=75.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
+=..+.+.|++++|...|++..+.. ..+...|..+-.+|.+.|++++|.+.|++..+. .| +...|..+-..|...
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHH
Confidence 3455678899999999999888875 567888999999999999999999999988774 24 467788888888899
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|++++|.+.|++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 9999999999887764
No 97
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.97 E-value=8.7e-05 Score=59.75 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=93.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDA----YIYKDLIIALARTGKMNEAMQVWESMRKEDL-FPD----SQTYTE 182 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~ 182 (256)
.+..+...|++++|.+.+++..+.....|+. ..|..+...+...|++++|.+.|++..+... .+| ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4677889999999999999988754233442 2344566667777899999999999987422 233 236899
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh----C-CCCCCh-hHHHHHHHHhcCCCChHHHHH
Q 025226 183 VIRGFLKDGSPADAMNIYEDMIK----S-PDPPEE-LPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~M~~----~-g~~p~~-~t~~~li~~~~~~g~~~~a~~ 233 (256)
+-..|...|++++|.+.|++..+ . +..|.. .+|..+-..|.+.|++++|++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~ 217 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999874 2 222333 378889999999999999998
No 98
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.97 E-value=0.00059 Score=46.70 Aligned_cols=116 Identities=13% Similarity=-0.033 Sum_probs=86.4
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+..+...+...|+.++|+..+.+......-.+... .+-..+...|++++|.+.++...+.. ..+...|..+-..|.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHHHHHH
Confidence 344456677889999999865543333222122222 46777889999999999999998875 567889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
..|++++|.+.|++..+.. +.+...+..+...+.+.|+.
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999988742 12567777777787777764
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.96 E-value=0.00018 Score=65.28 Aligned_cols=147 Identities=10% Similarity=-0.011 Sum_probs=116.7
Q ss_pred hcCCCcHHHHHHHHHHHh------hccCCCcH---H-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 84 KRFKDDEEKLQKFIKTHV------LRLLKMDI---V-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~------~~~~~~~~---~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
...++.++|++.+ +... .....|+. . .+-.++...|++++|.+.|++..+.. .-+...|..+-.+|.
T Consensus 402 ~~~~~~~~A~~~~-~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSL-RAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHH-HHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHH-HHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 6789999998555 4443 11222332 2 36667889999999999999999886 568889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
..|++++|.+.|++..+. .| +...|..+-..|.+.|++++ .+.|++..+.. .-+...|..+-..|.+.|++++|+
T Consensus 479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998874 35 56788889999999999999 99999988653 125568889999999999999999
Q ss_pred Hhhhh
Q 025226 233 KKDFE 237 (256)
Q Consensus 233 ~~~~~ 237 (256)
+...+
T Consensus 555 ~~~~~ 559 (681)
T 2pzi_A 555 RTLDE 559 (681)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 94443
No 100
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.96 E-value=0.0003 Score=58.69 Aligned_cols=153 Identities=7% Similarity=-0.050 Sum_probs=112.0
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhc-cCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----CHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLR-LLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDWYQP-----DAYIYK 146 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~y~ 146 (256)
-..+...|+.++|+..+ +..... .-.++.. .+-..+...|++++|...+++..+...-.+ ...+++
T Consensus 110 g~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFF-KKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHTTCHHHHHHHH-HHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHH-HHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 34567889999998555 444332 2223322 366677889999999999998765421112 246788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CC-CCChhHHH
Q 025226 147 DLIIALARTGKMNEAMQVWESMRKED-LFPD----SQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PD-PPEELPFR 216 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~-~p~~~t~~ 216 (256)
.+-..|...|++++|.+.|++..+.. -.++ ..+|+.+-..|...|++++|.+.|++..+. +- .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 88899999999999999999877521 0122 247888999999999999999999988762 33 33466788
Q ss_pred HHHHHhcCCCChHHHHH
Q 025226 217 ILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 217 ~li~~~~~~g~~~~a~~ 233 (256)
.+-..|.+.|++++|.+
T Consensus 269 ~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHE 285 (383)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH
Confidence 89999999999999988
No 101
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.95 E-value=0.0014 Score=57.29 Aligned_cols=146 Identities=12% Similarity=0.040 Sum_probs=105.5
Q ss_pred CCCcH-------HHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHH
Q 025226 86 FKDDE-------EKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPD-AYIYKDLIIALA 153 (256)
Q Consensus 86 ~~~~~-------~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~~~ 153 (256)
.|+.+ +|.. +++...+ .+.|+.. .+...+.+.|++++|..+|+...+.. ..+ ...|......+.
T Consensus 292 ~g~~~~a~~~~~~A~~-~~~~Al~-~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~ 367 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAAN-IYERAIS-TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFAR 367 (530)
T ss_dssp TTCCHHHHHHHHHHHH-HHHHHTT-TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHH-HHHHHHH-HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHH
Confidence 68876 6663 4344432 1235433 47778888999999999999999864 234 358999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC-HhhHH--HHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHH
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPD-SQTYT--EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRS 230 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~-~~t~~--~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~ 230 (256)
+.|++++|.++|++..+. .|+ ...|- .++. +...|+.++|..+|++..+.. +-+...|..++..+.+.|+.++
T Consensus 368 ~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~-~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 368 RAEGIKSGRMIFKKARED--ARTRHHVYVTAALME-YYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHH
T ss_pred HhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHH-HHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhh
Confidence 999999999999998875 232 22222 2222 336899999999999887652 2257889999999999999999
Q ss_pred HHHhhhhhc
Q 025226 231 KVKKDFEEL 239 (256)
Q Consensus 231 a~~~~~~~~ 239 (256)
|.....+.+
T Consensus 444 Ar~~~~~al 452 (530)
T 2ooe_A 444 TRVLFERVL 452 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988444333
No 102
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.95 E-value=0.0002 Score=51.57 Aligned_cols=91 Identities=12% Similarity=0.013 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
+-..+.+.|++++|...|+...+.. ..+...|..+-.+|...|++++|.+.|++..+. .| +...|..+-..|...
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHHHHHHc
Confidence 5566778899999999999988876 568888999989999999999999999998774 24 557788888889999
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|++++|.+.|++..+.
T Consensus 103 g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 103 GELAEAESGLFLAQEL 118 (148)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999988764
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.94 E-value=0.00012 Score=58.95 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=26.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
.+...|++++|...|++..+.. +-+...+..+-..|...|++++|...+++..
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3444455555555555544443 3344445555555555555555555555443
No 104
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=97.93 E-value=0.00049 Score=60.14 Aligned_cols=153 Identities=13% Similarity=0.013 Sum_probs=112.1
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCc-H-H---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMD-I-V---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDL 148 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~l 148 (256)
..|......+.+.|+.++|...+ +..... .|+ . . .+...+.+.|++++|.++|++..+.. ..+...|-..
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~-~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~ 396 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIY-NRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH-HHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-HHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHH
Confidence 34555566777889999997544 555442 332 1 1 46667778999999999999998775 2233333322
Q ss_pred H-HHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCC--hhHHHHHHHHhc
Q 025226 149 I-IALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP-DPPE--ELPFRILLKGLL 223 (256)
Q Consensus 149 i-~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g-~~p~--~~t~~~li~~~~ 223 (256)
. ..+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|++..+.+ ..|+ ...|...++-..
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~ 474 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 474 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 2 2234689999999999988764 25 57889999999999999999999999998763 3343 457888888888
Q ss_pred CCCChHHHHH
Q 025226 224 PHPLLRSKVK 233 (256)
Q Consensus 224 ~~g~~~~a~~ 233 (256)
+.|+.+++..
T Consensus 475 ~~G~~~~~~~ 484 (530)
T 2ooe_A 475 NIGDLASILK 484 (530)
T ss_dssp HSSCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 8999888776
No 105
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=0.00024 Score=51.75 Aligned_cols=92 Identities=13% Similarity=0.055 Sum_probs=71.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
+-..+.+.|++++|++.|++..+.. .-+...|..+-.+|.+.|++++|...|++..+.. ..+...|..+-..|.+.|
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 4556677888888888888887775 4577888888888888888888888888877642 124677788888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 025226 192 SPADAMNIYEDMIKS 206 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~ 206 (256)
++++|.+.|++..+.
T Consensus 94 ~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 94 DYKGAKEAYEKGIEA 108 (164)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888887754
No 106
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.92 E-value=5.1e-06 Score=67.12 Aligned_cols=220 Identities=10% Similarity=-0.057 Sum_probs=143.0
Q ss_pred ccccCCchHHHHHHHHHhcCCC---------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS---------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEA 76 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~---------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 76 (256)
+.+.|+.+.|.+.++...+... +..+-..+...++...+ +..+++......... ........+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~~~~~---~~~~~~~~~ 86 (338)
T 3ro2_A 15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA-----LEYHHHDLTLARTIG---DQLGEAKAS 86 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHHHT---CHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHHhhccc---ccHHHHHHH
Confidence 4568899999999998654321 33444455556666666 776655432211000 000112234
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCc------HH-HHHHHHHHcCC--------------------HHHHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMD------IV-AVLIELERQEE--------------------TILAVKIF 129 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~-~li~~~~~~~~--------------------~~~a~~~~ 129 (256)
..+-..+...|+.++|...+.+......-.++ .. .+-..+...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 44566778899999998655433322111122 11 36667778888 99999999
Q ss_pred HHHHhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HhhHHHHHHHHHHcCChhHHHHHH
Q 025226 130 DIIRKQ----DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPD----SQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 130 ~~m~~~----~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
++..+. +.......++..+-..|...|++++|.+.+++..+.. -.++ ..++..+...|...|++++|.+.+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 876533 2011224578888899999999999999999876521 0112 347888899999999999999999
Q ss_pred HHHHhC----CCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 201 EDMIKS----PDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 201 ~~M~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++..+. +-.+ ...++..+...|...|++++|.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 987643 1111 15677888899999999999988
No 107
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.92 E-value=0.00031 Score=49.12 Aligned_cols=93 Identities=10% Similarity=-0.065 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+-..+...|++++|...|+...+.. ..+...|..+-..|...|++++|...|++..+.. +.+...|..+-..|.+.
T Consensus 14 ~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 14 EQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 35667778899999999999888775 5578888888888999999999999998887743 12567788888888899
Q ss_pred CChhHHHHHHHHHHhC
Q 025226 191 GSPADAMNIYEDMIKS 206 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~ 206 (256)
|++++|...|.+..+.
T Consensus 91 ~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 91 ESYDEAIANLQRAYSL 106 (137)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 9999999998887653
No 108
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.90 E-value=2.6e-05 Score=56.42 Aligned_cols=128 Identities=9% Similarity=0.020 Sum_probs=97.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADA 196 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a 196 (256)
..|++++|+..+....... +-+...+-.+-..|.+.|++++|.+.|++..+. .| +...|..+-..|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 4578899999888876543 223445666788899999999999999998874 35 578899999999999999999
Q ss_pred HHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCChHHHHHh---hhhhcCCCc-ccccchhH
Q 025226 197 MNIYEDMIKSPDPP-EELPFRILLKGLLPHPLLRSKVKK---DFEELFPEK-HAYDPPEE 251 (256)
Q Consensus 197 ~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~---~~~~~~p~~-~~~~~li~ 251 (256)
...|++..+. .| +...|..+-..|.+.|+++++.+. ....+.|+. ..|.....
T Consensus 85 ~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 85 VECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 9999998875 34 467788888999999998887662 334566753 34444333
No 109
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.87 E-value=8.1e-06 Score=68.11 Aligned_cols=220 Identities=10% Similarity=-0.066 Sum_probs=142.8
Q ss_pred ccccCCchHHHHHHHHHhcCCC---------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhH
Q 025226 6 FSRSKIPILASIVLQNLTKNPS---------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEA 76 (256)
Q Consensus 6 ~~~~~~~~~A~~l~~~m~~~~~---------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 76 (256)
+.+.|+.+.|.+.|+...+... |..+-..+...++...+ +..+++.......... .......+
T Consensus 19 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~~~~~~---~~~~~~~~ 90 (406)
T 3sf4_A 19 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKA-----LEYHHHDLTLARTIGD---QLGEAKAS 90 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHHHHHhccc---cHHHHHHH
Confidence 4567899999999988654321 33444455566666666 7766554322111000 00112234
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCc------HH-HHHHHHHHcCC--------------------HHHHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMD------IV-AVLIELERQEE--------------------TILAVKIF 129 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~-~li~~~~~~~~--------------------~~~a~~~~ 129 (256)
..+-..+...|+.++|+..+.+......-.++ .. .+-..+...|+ +++|.+.+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 44566778899999998544332222111112 11 36667778889 99999998
Q ss_pred HHHHhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HhhHHHHHHHHHHcCChhHHHHHH
Q 025226 130 DIIRKQ----DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPD----SQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 130 ~~m~~~----~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
++..+. +.......+|..+-..|...|++++|.+.|++..+.. -.++ ..+|..+-..|...|++++|...+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 876543 2011224578888899999999999999999887521 1122 347888899999999999999999
Q ss_pred HHHHhC----CCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 201 EDMIKS----PDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 201 ~~M~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++..+. +-.+ ...++..+...|...|++++|.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 987643 2111 15678888999999999999988
No 110
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.86 E-value=0.0002 Score=49.68 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=65.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLK 189 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~ 189 (256)
.+-..+.+.|++++|...|++..+.. .-+...|..+-.++...|++++|...|++..+. .| +...|..+-..|.+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 34455667778888888888777764 456777777777777888888888888777663 24 45667777777777
Q ss_pred cCChhHHHHHHHHHHhC
Q 025226 190 DGSPADAMNIYEDMIKS 206 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~ 206 (256)
.|++++|...|++..+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 88888888888777654
No 111
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.84 E-value=0.00068 Score=56.45 Aligned_cols=152 Identities=9% Similarity=-0.074 Sum_probs=110.5
Q ss_pred HHhhcCCCcHHHHHHHHHHHhh-ccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----CHHHHHH
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVL-RLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDWYQP-----DAYIYKD 147 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~y~~ 147 (256)
..+...|+.++|+..+ +.... ..-.++.. .+-..+...|++++|...+++..+...-.+ ...+++.
T Consensus 109 ~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYY-REAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHTTCHHHHHHHH-HHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHH-HHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3456889999998555 44433 22223322 366678889999999999998764320111 2567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCChhHHHHH
Q 025226 148 LIIALARTGKMNEAMQVWESMRKE----DLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPPEELPFRIL 218 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p~~~t~~~l 218 (256)
+-..|...|++++|.+.|++..+. +-.+ ...+++.+-..|...|++++|.+.|++..+. +-.....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 899999999999999999987652 1111 2356788888899999999999999988761 222236778889
Q ss_pred HHHhcCCCChHHHHH
Q 025226 219 LKGLLPHPLLRSKVK 233 (256)
Q Consensus 219 i~~~~~~g~~~~a~~ 233 (256)
-..|.+.|++++|.+
T Consensus 268 a~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHH
Confidence 999999999999988
No 112
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.83 E-value=7.1e-05 Score=54.00 Aligned_cols=115 Identities=13% Similarity=0.007 Sum_probs=86.9
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 127 KIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 127 ~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
..|++..+.. ..+...+..+-..+...|++++|...|++.... .| +...|..+-..|.+.|++++|.+.|++..+
T Consensus 8 ~~~~~al~~~--p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEIS--SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC--HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3445544443 335567777888899999999999999998774 24 677888888899999999999999999887
Q ss_pred CCCCCChhHHHHHHHHhcCCCChHHHHHh--hhhhcCCCcccc
Q 025226 206 SPDPPEELPFRILLKGLLPHPLLRSKVKK--DFEELFPEKHAY 246 (256)
Q Consensus 206 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~--~~~~~~p~~~~~ 246 (256)
.. +-+...|..+-.+|...|++++|.+. ..-.+.|+...+
T Consensus 84 l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 84 MD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred cC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 53 22567788899999999999999983 233444554433
No 113
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.82 E-value=0.0001 Score=55.32 Aligned_cols=147 Identities=15% Similarity=-0.003 Sum_probs=98.8
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhc
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIV----AVLIELERQEETILAVKIFDIIRKQ----DWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~~y~~li~~~~~~ 155 (256)
...|+.++|.. ..+.... ..+... .+-..+...|++++|...+++..+. +.......+++.+-..|...
T Consensus 3 ~~~g~~~~A~~-~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAER-QAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHH-HHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHH-HHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 35678888864 2222222 111222 3666777899999999999987752 10123456788888899999
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCC-CChhHHHHHHHHhcC
Q 025226 156 GKMNEAMQVWESMRKE----DLFP--DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDP-PEELPFRILLKGLLP 224 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~-p~~~t~~~li~~~~~ 224 (256)
|++++|.+.|++..+. +-.| ....+..+-..|...|++++|.+.+++..+. +-. +-..++..+-..+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999987653 2111 1355778888889999999999999887642 211 123346778888999
Q ss_pred CCChHHHHH
Q 025226 225 HPLLRSKVK 233 (256)
Q Consensus 225 ~g~~~~a~~ 233 (256)
.|++++|.+
T Consensus 160 ~g~~~~A~~ 168 (203)
T 3gw4_A 160 EKNLLEAQQ 168 (203)
T ss_dssp TTCHHHHHH
T ss_pred CcCHHHHHH
Confidence 999999887
No 114
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.81 E-value=0.0012 Score=45.41 Aligned_cols=113 Identities=12% Similarity=-0.027 Sum_probs=82.3
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIA 151 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 151 (256)
..+..+-..+.+.|+.++|+..+ +...... -.+... .+-..+...|++++|.+.|++..+.. ..+...|..+-..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~-~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHY-TEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHH-HHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHH
Confidence 45556677888999999998555 4443322 112222 36667788999999999999999885 5678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcC
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDG 191 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g 191 (256)
|.+.|++++|.+.|++..+. .|+ ...+..+-..+.+.|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 99999999999999998774 243 345555555555443
No 115
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.81 E-value=0.00045 Score=47.70 Aligned_cols=91 Identities=10% Similarity=0.010 Sum_probs=64.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDA---YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD----SQTYTEVI 184 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li 184 (256)
+-..+...|++++|...|+...+.. +.+. ..+..+-.+|...|++++|...|++..+.. |+ ...+..+-
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence 3445667788888888888877664 2223 466667777888888888888888877632 33 45566677
Q ss_pred HHHHHcCChhHHHHHHHHHHhC
Q 025226 185 RGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 185 ~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
..|.+.|++++|...|++..+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888887765
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=97.80 E-value=0.00062 Score=54.70 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=112.2
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH-HHHHhc
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI-IALART 155 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li-~~~~~~ 155 (256)
..-..+.+.|+.++|...+-+......-.++.. .+-..+...|++++|...+++..+.. |+........ ..+...
T Consensus 122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~~~~~l~~~ 198 (287)
T 3qou_A 122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLVAQIELLXQ 198 (287)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHHHHHHHHhh
Confidence 334566789999999855543333222222233 47788899999999999999987664 5554333333 336677
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHhcCCCChHHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++.++|.+.|++.... .| +...+..+-..|...|++++|.+.|.+..+..-. .+...+..+...|...|+.++|..
T Consensus 199 ~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 199 AADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp HTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 8888899999988764 25 5788899999999999999999999999876322 236678999999999999888876
No 117
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.79 E-value=0.00039 Score=57.32 Aligned_cols=118 Identities=8% Similarity=-0.059 Sum_probs=83.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD---------------AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
+=..+.+.|++++|...|++..+.. ..+ ...|..+-.+|.+.|++++|.+.|++..+.. ..+
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 229 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNN 229 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence 4555667788888888888777664 222 5778888888888888888888888777642 125
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 177 ~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
...|..+-.+|.+.|++++|...|++..+.. .-+...+..+-..+.+.|+.+++.+
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777788888888888888888777652 1245566677777777777776633
No 118
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.78 E-value=0.0016 Score=56.28 Aligned_cols=137 Identities=9% Similarity=-0.012 Sum_probs=95.2
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC---C
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ-----EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG---K 157 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g---~ 157 (256)
.++.++|+. +++...+.+.......+-..+... ++.++|...|.+..+.| +...+..+-..|...| +
T Consensus 272 ~~d~~~A~~-~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 272 AKEPLKALE-WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp SCCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHH
T ss_pred CCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCccc
Confidence 677777774 444554444322222344455555 78888888888888776 4556666766776655 7
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC----CCChH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP----HPLLR 229 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~----~g~~~ 229 (256)
.++|.+.|++..+. .+...+..|-..|.. .++.++|.++|++..+.| +...+..|-..|.+ .++.+
T Consensus 347 ~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 88888888888775 366777777777877 788888888888888765 45566666666665 77888
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
+|.+
T Consensus 421 ~A~~ 424 (490)
T 2xm6_A 421 QAWA 424 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8877
No 119
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.77 E-value=0.00019 Score=49.34 Aligned_cols=107 Identities=8% Similarity=0.073 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC----hhHH
Q 025226 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPD--PPE----ELPF 215 (256)
Q Consensus 142 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~--~p~----~~t~ 215 (256)
...|..+-..+...|++++|...|++..+.. +.+...+..+-..|.+.|++++|...+++..+... .++ ...|
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888889999999999999999988743 23677888999999999999999999999876521 223 6788
Q ss_pred HHHHHHhcCCCChHHHHHh--hhhhcCCCcccccch
Q 025226 216 RILLKGLLPHPLLRSKVKK--DFEELFPEKHAYDPP 249 (256)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~--~~~~~~p~~~~~~~l 249 (256)
..+...|.+.|++++|.+. ......|+......+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 8899999999999999982 223345654444433
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00075 Score=47.08 Aligned_cols=96 Identities=11% Similarity=-0.051 Sum_probs=75.0
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
..=..|.+.|+.++|+..+-+......-.+... .+-.++.+.|++++|++.|+...+.. ..+...|..+-.+|...|
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCC
Confidence 344678899999999966544443332223333 46677889999999999999999886 678899999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH
Q 025226 157 KMNEAMQVWESMRKEDLFPDS 177 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~ 177 (256)
++++|.+.|++..+. .|+-
T Consensus 96 ~~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 96 EWSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp CHHHHHHHHHHHHHH--CTTC
T ss_pred CHHHHHHHHHHHHHH--CcCC
Confidence 999999999998873 4653
No 121
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.75 E-value=0.00049 Score=55.77 Aligned_cols=151 Identities=10% Similarity=0.042 Sum_probs=85.5
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhh---ccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCC--HHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIV----AVLIELERQEETILAVKIFDIIRKQ----DWYQPD--AYIYK 146 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~--~~~y~ 146 (256)
...|...|++++|+..+.+.... .+-.+... .+-..|.+.|++++|...|++..+. | .|. ..+|+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g--~~~~~a~~~~ 120 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG--TPDTAAMALD 120 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT--CHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHH
Confidence 34556677777776544332221 11111111 2555566677777777777764432 2 121 34666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCh-hHHH
Q 025226 147 DLIIALARTGKMNEAMQVWESMRKE----DLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPPEE-LPFR 216 (256)
Q Consensus 147 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p~~-~t~~ 216 (256)
.+-..|.. |++++|.+.|++..+. |-.+ ...+++.+-..|.+.|++++|.+.|++..+. +..++. ..+.
T Consensus 121 ~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 199 (307)
T 2ifu_A 121 RAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCI 199 (307)
T ss_dssp HHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 66666766 7777777777766542 1000 1356667777777777777777777776542 222222 2455
Q ss_pred HHHHHhcCCCChHHHHH
Q 025226 217 ILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 217 ~li~~~~~~g~~~~a~~ 233 (256)
.+...+...|++++|..
T Consensus 200 ~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 200 AQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 55566666677777776
No 122
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.75 E-value=0.0016 Score=45.77 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=43.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHH
Q 025226 115 ELERQEETILAVKIFDIIRKQDWYQPD----AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLK 189 (256)
Q Consensus 115 ~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~ 189 (256)
.+...|++++|.+.|++..+.. |+ ...|..+-..|...|++++|.+.|++..+. .| +...|..+-..|.+
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 111 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALYRRSQALEK 111 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHHHHHHHHHH
Confidence 3444555555555555554432 33 445555555555555555555555554442 12 34445555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 025226 190 DGSPADAMNIYEDMIK 205 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~ 205 (256)
.|++++|...|++..+
T Consensus 112 ~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 112 LGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555544
No 123
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.73 E-value=0.00074 Score=56.27 Aligned_cols=158 Identities=9% Similarity=-0.024 Sum_probs=107.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCc----HH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMD----IV----AVLIELERQEETILAVKIFDIIRKQDWYQPD----AY 143 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~ 143 (256)
+..+-..|...|+.++|+..+.+......-.++ .. .+=..|...|++++|...|++..+...-.++ ..
T Consensus 146 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 225 (383)
T 3ulq_A 146 FFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGR 225 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 344456778899999998555433322111122 11 2556777889999999999987644201122 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCChhH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKE----DL-FPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPPEELP 214 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p~~~t 214 (256)
+|+.+-..|...|++++|.+.|++..+. +- .....++..+-..|.+.|++++|.+.+++..+. +-......
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7888889999999999999999988762 22 234577888999999999999999999887643 22222334
Q ss_pred HHHHHHHhcCCCC---hHHHHH
Q 025226 215 FRILLKGLLPHPL---LRSKVK 233 (256)
Q Consensus 215 ~~~li~~~~~~g~---~~~a~~ 233 (256)
+..+-..|...|+ +++|+.
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~ 327 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFD 327 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHH
Confidence 5667777777777 555655
No 124
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.73 E-value=0.00075 Score=53.00 Aligned_cols=128 Identities=15% Similarity=0.072 Sum_probs=96.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC-HhhHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPD---AYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPD-SQTYTEVIR 185 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~-~~t~~~li~ 185 (256)
.+-..+.+.|++++|...|++..+.. +-+ ...+..+-.+|.+.|++++|...|++..+.. -.|+ ...+..+-.
T Consensus 20 ~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 20 ERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 45667788999999999999999875 233 6788889999999999999999999998742 1122 345666777
Q ss_pred HHHH--------cCChhHHHHHHHHHHhCCCCCCh-hHH-----------------HHHHHHhcCCCChHHHHHhhh--h
Q 025226 186 GFLK--------DGSPADAMNIYEDMIKSPDPPEE-LPF-----------------RILLKGLLPHPLLRSKVKKDF--E 237 (256)
Q Consensus 186 ~~~~--------~g~~~~a~~~~~~M~~~g~~p~~-~t~-----------------~~li~~~~~~g~~~~a~~~~~--~ 237 (256)
.|.+ .|++++|...|++..+.. |+. ... ..+-..|.+.|++++|+.... -
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777 999999999999998752 322 223 445778889999999999332 3
Q ss_pred hcCCC
Q 025226 238 ELFPE 242 (256)
Q Consensus 238 ~~~p~ 242 (256)
...|+
T Consensus 176 ~~~p~ 180 (261)
T 3qky_A 176 DAYPD 180 (261)
T ss_dssp HHCTT
T ss_pred HHCCC
Confidence 34565
No 125
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.72 E-value=0.00018 Score=53.19 Aligned_cols=127 Identities=14% Similarity=0.089 Sum_probs=89.6
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIE--LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+..+-..+.+.|+.++|+..+ +......-.|....+... +...++..+|...+++..+.. +-+...+..+-..+
T Consensus 42 a~~~la~~~~~~g~~~~A~~~~-~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P~~~~~~~~la~~~ 118 (176)
T 2r5s_A 42 VKLAKADCLLETKQFELAQELL-ATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN--PDNFELACELAVQY 118 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH-TTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHH-HHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 3445566788999999998544 443322212222222211 122223345788899888775 45789999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
...|++++|.+.|++..+..-.+ +...+..+...|...|+.++|...|++..
T Consensus 119 ~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 119 NQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 99999999999999998854222 35688999999999999999999998754
No 126
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.72 E-value=0.00056 Score=45.50 Aligned_cols=95 Identities=11% Similarity=0.014 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CChhHHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP-PEELPFRILL 219 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~-p~~~t~~~li 219 (256)
+...|..+-..+...|++++|...|++..+.. ..+...|..+-..|.+.|++++|.+.|++..+.... .+...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 34567778888999999999999999988742 235678888999999999999999999999876321 1578889999
Q ss_pred HHhcCC-CChHHHHHhhh
Q 025226 220 KGLLPH-PLLRSKVKKDF 236 (256)
Q Consensus 220 ~~~~~~-g~~~~a~~~~~ 236 (256)
..|.+. |++++|.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHH
Confidence 999999 99999999433
No 127
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.71 E-value=0.0023 Score=55.28 Aligned_cols=137 Identities=7% Similarity=-0.008 Sum_probs=70.6
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCC
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIELER----QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR----TGK 157 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~----~g~ 157 (256)
.++.++|+. +++.....+.......+-..|.. .++.++|++.|++..+.| +...+..+-..|.. .++
T Consensus 128 ~~~~~~A~~-~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~ 202 (490)
T 2xm6_A 128 KVDKAESVK-WFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSCNQLGYMYSRGLGVERN 202 (490)
T ss_dssp CCCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCCCcC
Confidence 556666653 33444444421111123333433 456666666666666554 45555556555655 566
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcC----CCChH
Q 025226 158 MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLP----HPLLR 229 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~----~g~~~ 229 (256)
.++|.+.|++..+.| +...+..+-..|.. .++.++|.++|++..+.| +...+..+-..|.. .++.+
T Consensus 203 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~ 276 (490)
T 2xm6_A 203 DAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPL 276 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHH
Confidence 666666666665542 44455555555554 556666666666655543 22233333333333 45555
Q ss_pred HHHH
Q 025226 230 SKVK 233 (256)
Q Consensus 230 ~a~~ 233 (256)
+|++
T Consensus 277 ~A~~ 280 (490)
T 2xm6_A 277 KALE 280 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
No 128
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.69 E-value=0.001 Score=63.99 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=105.0
Q ss_pred hhHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 74 KEALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
..|..+-.++.+.|++++|++.+.+ .+- |+.+ .++.++.+.|++++|.+.+..-++.. +++...+.+.-+|
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiK----AdD-~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIK----ADD-PSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHh----cCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHH
Confidence 3566667788888999999876632 222 3333 58999999999999999998766553 4444455699999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
++.+++++...+. . .|+...|..+=..|-..|++++|..+|... ..|..+..+|++.|++++|+
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 9999988655443 2 267777888888888999999999999984 58999999999999999999
Q ss_pred H
Q 025226 233 K 233 (256)
Q Consensus 233 ~ 233 (256)
+
T Consensus 1242 E 1242 (1630)
T 1xi4_A 1242 D 1242 (1630)
T ss_pred H
Confidence 8
No 129
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=97.68 E-value=0.00034 Score=63.36 Aligned_cols=145 Identities=12% Similarity=0.044 Sum_probs=108.8
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+..+-..+.+.|+.++|+..+ +...+.. -.+... .+=.++...|++++|.+.|++..+.. .-+...|..+-.+|
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~-~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKL-DDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHH-HHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 4445566788899999998655 4443322 112222 35567888999999999999999886 55778899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHhcCCCC
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFRILLKGLLPHPL 227 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~~li~~~~~~g~ 227 (256)
.+.|++++ .+.|++..+. .| +...|..+-..|.+.|++++|.+.|++..+. .|+ ...|..+..++...|.
T Consensus 512 ~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 99999999 9999998874 24 5678999999999999999999999987665 454 4566677777776554
No 130
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.64 E-value=0.0002 Score=59.95 Aligned_cols=155 Identities=11% Similarity=-0.026 Sum_probs=104.6
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccC-CCcH----H-HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCCHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLL-KMDI----V-AVLIELERQEETILAVKIFDIIRKQ----DWYQPDAYIYKD 147 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~-~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~~y~~ 147 (256)
..-..+...|+.++|+..+ +......- .+.. . .+-..+...|++++|...|++..+. +.......+|..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFF-QAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHH-HHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3456678889999998544 44444321 1111 1 3566677889999999998877644 101234567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCC-----------------hhHHHHHHHHHHh
Q 025226 148 LIIALARTGKMNEAMQVWESMRKE----DLFP-DSQTYTEVIRGFLKDGS-----------------PADAMNIYEDMIK 205 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~-----------------~~~a~~~~~~M~~ 205 (256)
+-..|...|++++|.+.|++..+. +-.| ...+|..+-..|...|+ +++|.+.+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 888888999999999998887653 1111 24577788888888888 8888888877643
Q ss_pred C----CCC-CChhHHHHHHHHhcCCCChHHHHH
Q 025226 206 S----PDP-PEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 206 ~----g~~-p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
. +-. .....+..+-..|...|++++|.+
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 244 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIE 244 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 2 211 123467777888888888888877
No 131
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.63 E-value=0.00068 Score=50.94 Aligned_cols=119 Identities=10% Similarity=-0.106 Sum_probs=71.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD--------------AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS 177 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 177 (256)
+-..+.+.|++++|...|++..+...-.|+ ...|..+-.+|.+.|++++|...+++..+.. ..+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 344556677777777777776654311111 2667777777777777777777777776631 1245
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHH
Q 025226 178 QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKV 232 (256)
Q Consensus 178 ~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 232 (256)
..|..+-..|...|++++|.+.|++..+.. .-+...+..+-..+...++..++.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777777766542 113445555555555555444433
No 132
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.62 E-value=0.00031 Score=58.37 Aligned_cols=221 Identities=8% Similarity=-0.190 Sum_probs=142.7
Q ss_pred cccccCCchHHHHHHHHHhc----CCC-------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccc
Q 025226 5 LFSRSKIPILASIVLQNLTK----NPS-------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIG 73 (256)
Q Consensus 5 ~~~~~~~~~~A~~l~~~m~~----~~~-------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~ 73 (256)
.+...|+.+.|.+.++...+ .+. +..+-..+...++...+ +..+++.......... .....
T Consensus 56 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~al~~~~~~~~---~~~~~ 127 (406)
T 3sf4_A 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEA-----IVCCQRHLDISRELND---KVGEA 127 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHHHTC---HHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHHHHHhccc---ccchH
Confidence 35567888899888776422 111 44444455566777666 6666554432111100 00112
Q ss_pred hhHHHHHHHhhcCCC--------------------cHHHHHHHHHHHh---hccCCCcHH----HHHHHHHHcCCHHHHH
Q 025226 74 KEALFVILGLKRFKD--------------------DEEKLQKFIKTHV---LRLLKMDIV----AVLIELERQEETILAV 126 (256)
Q Consensus 74 ~~~~~~i~~~~~~~~--------------------~~~a~~~~~~~~~---~~~~~~~~~----~li~~~~~~~~~~~a~ 126 (256)
..+..+-..+...|+ .++|+..+.+... ..+-.|... .+-..+...|++++|.
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 234444566677787 7887744432221 122222221 3667788899999999
Q ss_pred HHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHHcCChhHHH
Q 025226 127 KIFDIIRKQDWYQPD----AYIYKDLIIALARTGKMNEAMQVWESMRKE----DLFPD-SQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 127 ~~~~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~ 197 (256)
..+++..+...-.++ ..+|..+-..|...|++++|...+++..+. +-.+. ..++..+-..|.+.|++++|.
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 287 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 287 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHH
Confidence 999987654211222 348888999999999999999999987652 11111 567888999999999999999
Q ss_pred HHHHHHHhC----CCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 198 NIYEDMIKS----PDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 198 ~~~~~M~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+.+++..+. +-.+ ...++..+-..|...|++++|.+
T Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 288 DYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999987653 2111 15577888899999999999988
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=0.0056 Score=40.77 Aligned_cols=93 Identities=11% Similarity=-0.098 Sum_probs=71.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
+......+...|+.++|+..+ +...... -.+... .+-..+...|++++|...+++..+.. ..+...|..+-..|.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCY-SEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHH-HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHH-HHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHH
Confidence 344556778899999998555 4443322 222222 36677888999999999999998886 557889999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 025226 154 RTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~ 171 (256)
..|++++|.+.|++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 999999999999998874
No 134
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.59 E-value=0.00014 Score=49.96 Aligned_cols=86 Identities=14% Similarity=0.045 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHH
Q 025226 119 QEETILAVKIFDIIRKQDWY-QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADA 196 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~-~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a 196 (256)
.|++++|+..|++..+.+.- .-+...|..+-..|...|++++|.+.|++..+.. | +...+..+-..|.+.|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence 45666666677666654200 1234556666666667777777777777666532 3 355666666666677777777
Q ss_pred HHHHHHHHhC
Q 025226 197 MNIYEDMIKS 206 (256)
Q Consensus 197 ~~~~~~M~~~ 206 (256)
.+.|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777665543
No 135
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.58 E-value=0.0018 Score=51.92 Aligned_cols=121 Identities=8% Similarity=-0.002 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--Hhh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDA------YIYKDLIIALARTGKMNEAMQVWESMRKED---LFPD--SQT 179 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~------~~y~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~t 179 (256)
..+..+...|++++|.+.+++..+.. ..+. ..+..+...+...|++++|.+.|++..+.. ..+. ..+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 46778889999999999999887764 2222 223445556678899999999999887532 1222 458
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC--ChhHHHHHHHHhcCCCChHHHHH
Q 025226 180 YTEVIRGFLKDGSPADAMNIYEDMIKS----PDPP--EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
|+.+-..|...|++++|.+.|++..+. +-.+ ...+|..+-..|.+.|++++|++
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 899999999999999999999988732 2112 22588899999999999999998
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.56 E-value=0.0031 Score=51.87 Aligned_cols=126 Identities=8% Similarity=-0.054 Sum_probs=97.0
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCC---------------cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKM---------------DIV-AVLIELERQEETILAVKIFDIIRKQDWY 138 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~ 138 (256)
.+..+-..+.+.|+.++|+..+.+......-.+ ... .+-.++.+.|++++|+..|++..+..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-- 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 334445677889999999865544333222211 111 36677889999999999999999886
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHH-HHHHHHHH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADA-MNIYEDMI 204 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a-~~~~~~M~ 204 (256)
..+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-..+.+.|+.++| ...|.+|.
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999999998874 34 567888888999999999988 55666664
No 137
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.56 E-value=0.00023 Score=59.58 Aligned_cols=159 Identities=8% Similarity=-0.084 Sum_probs=110.9
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhh---ccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCCHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIV----AVLIELERQEETILAVKIFDIIRKQ----DWYQPDAY 143 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~ 143 (256)
.+..+-..+...|+.++|...+.+.... .+-.|... .+-..+...|++++|...|++..+. +.......
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3445566778889999998544332221 11122222 3667778899999999999987654 10122356
Q ss_pred HHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHH
Q 025226 144 IYKDLIIALARTGK-----------------MNEAMQVWESMRKE----DLFP-DSQTYTEVIRGFLKDGSPADAMNIYE 201 (256)
Q Consensus 144 ~y~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~ 201 (256)
+|..+-..|...|+ +++|.+.+++..+. +-.| ...+|..+-..|...|++++|.+.|+
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 78888889999999 99999999886542 1111 23578888889999999999999999
Q ss_pred HHHhCCC-CCC----hhHHHHHHHHhcCCCChHHHHH
Q 025226 202 DMIKSPD-PPE----ELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 202 ~M~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+..+..- .++ ...+..+...|...|++++|.+
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 8765311 111 2378889999999999999988
No 138
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.55 E-value=0.00051 Score=55.13 Aligned_cols=153 Identities=14% Similarity=0.023 Sum_probs=82.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCC-CcH--H---HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCCHHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLK-MDI--V---AVLIELERQEETILAVKIFDIIRKQ----DWYQPDAYIYKDLI 149 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~--~---~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~~y~~li 149 (256)
-..+...|+.++|+..+ +........ |.. . .+-..+...|++++|.+.+++..+. +.......++..+-
T Consensus 12 g~~~~~~g~~~~A~~~~-~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFF-EAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHH-HHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHH-HHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 34556677777776433 333332211 110 1 2455566677777777777664432 10011245566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-CCCCC----HhhHHHHHHHHHHcCC--------------------hhHHHHHHHHHH
Q 025226 150 IALARTGKMNEAMQVWESMRKE-DLFPD----SQTYTEVIRGFLKDGS--------------------PADAMNIYEDMI 204 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~----~~t~~~li~~~~~~g~--------------------~~~a~~~~~~M~ 204 (256)
..|...|++++|.+.+++..+. .-.++ ..++..+-..|...|+ +++|.+.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6777777777777777765442 00112 2356666666666777 677776666544
Q ss_pred hC----CCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 205 KS----PDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 205 ~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+. +-.| ....+..+...|...|++++|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 21 1111 12355566666666777776666
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.54 E-value=0.0071 Score=46.00 Aligned_cols=147 Identities=5% Similarity=-0.101 Sum_probs=105.5
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcC----CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQE----ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
+-..|...++.++|+. +++.....|.......|=..|.. + +.++|.+.|....+.| ++..+..|-..|..
T Consensus 24 lg~~~~~~~~~~~A~~-~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g----~~~a~~~Lg~~y~~ 97 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEY-WAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG----SKSGEIVLARVLVN 97 (212)
T ss_dssp HHHHHHHHTCHHHHHH-HHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHTC
T ss_pred HHHHHhcCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHc
Confidence 3445566899999984 55566555542222233333444 6 8999999999998777 67778888888877
Q ss_pred ----cCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC
Q 025226 155 ----TGKMNEAMQVWESMRKEDLF-PDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 155 ----~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
.+++++|.+.|++..+.|-. .+...+..|=..|.. .++.++|..+|++-.+.+ ++...+..|-..|...
T Consensus 98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQG 175 (212)
T ss_dssp GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHC
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcC
Confidence 88999999999998876421 026788888888888 789999999999998772 2444566666666532
Q ss_pred ------CChHHHHH
Q 025226 226 ------PLLRSKVK 233 (256)
Q Consensus 226 ------g~~~~a~~ 233 (256)
.+.++|.+
T Consensus 176 ~gg~~~~d~~~A~~ 189 (212)
T 3rjv_A 176 EKGFIEPNKQKALH 189 (212)
T ss_dssp BTTTBCCCHHHHHH
T ss_pred CCCCCCCCHHHHHH
Confidence 37888887
No 140
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.54 E-value=0.0016 Score=45.25 Aligned_cols=93 Identities=16% Similarity=0.049 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
..+...|..+-..+...|++++|...|++..+.. +.+...|..+-..|.+.|++++|...|++..+.. +.+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4578899999999999999999999999988743 2357889999999999999999999999988753 2256788899
Q ss_pred HHHhcCCCChHHHHH
Q 025226 219 LKGLLPHPLLRSKVK 233 (256)
Q Consensus 219 i~~~~~~g~~~~a~~ 233 (256)
-..|...|++++|.+
T Consensus 84 ~~~~~~~~~~~~A~~ 98 (137)
T 3q49_B 84 GQCQLEMESYDEAIA 98 (137)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHHhhHHHHHH
Confidence 999999999999988
No 141
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.54 E-value=0.0017 Score=45.66 Aligned_cols=101 Identities=12% Similarity=-0.057 Sum_probs=82.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD----SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELP 214 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t 214 (256)
..+...+..+-..+...|++++|.+.|++..+. .|+ ...|..+-..|.+.|++++|.+.+++..+.. ..+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 356788999999999999999999999998874 466 6888889999999999999999999987652 225677
Q ss_pred HHHHHHHhcCCCChHHHHHhhh--hhcCCC
Q 025226 215 FRILLKGLLPHPLLRSKVKKDF--EELFPE 242 (256)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~~~~--~~~~p~ 242 (256)
|..+-..|...|++++|.+... ..+.|+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 8888899999999999988333 334454
No 142
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.52 E-value=0.00045 Score=59.89 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=59.7
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhH
Q 025226 117 ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPAD 195 (256)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~ 195 (256)
.+.|++++|.+.|++..+.. .-+..+|..+-.+|.+.|++++|.+.|++..+. .| +...|..+-..|.+.|++++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHH
Confidence 34556666666666665553 344566666666666666666666666666553 23 34555566666666666666
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHH--hcCCCChHHHHH
Q 025226 196 AMNIYEDMIKSPDPPEELPFRILLKG--LLPHPLLRSKVK 233 (256)
Q Consensus 196 a~~~~~~M~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~ 233 (256)
|.+.|++..+..-. +...+..+-.+ +.+.|++++|++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~ 131 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIA 131 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666665543110 12223333333 455555555555
No 143
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.51 E-value=0.007 Score=50.22 Aligned_cols=156 Identities=9% Similarity=0.006 Sum_probs=108.7
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccC----CCcHH----HHHHHHHHcCCHHHHHHHHHHHHhc----CCCCCCHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLL----KMDIV----AVLIELERQEETILAVKIFDIIRKQ----DWYQPDAYI 144 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~----~~~~p~~~~ 144 (256)
..+-..|...|+.++|+..+.+......- .+... .+=..|...|++++|.+.|++..+. +.......+
T Consensus 145 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 224 (378)
T 3q15_A 145 FKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAIS 224 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34456778899999998555433322111 12111 3566678899999999999987653 201112457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCChhHH
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRK-----EDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPPEELPF 215 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p~~~t~ 215 (256)
++.+-..|...|++++|.+.|++..+ .. .....++..+-..|.+.|++++|.+.+++..+. +-......+
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 303 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF 303 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888899999999999999998876 32 223677888999999999999999999988753 222334456
Q ss_pred HHHHHHhcCCCC---hHHHHH
Q 025226 216 RILLKGLLPHPL---LRSKVK 233 (256)
Q Consensus 216 ~~li~~~~~~g~---~~~a~~ 233 (256)
+.+-..|...|+ +.+|+.
T Consensus 304 ~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 304 LFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHH
Confidence 666667777777 666666
No 144
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.50 E-value=0.002 Score=49.10 Aligned_cols=149 Identities=10% Similarity=-0.112 Sum_probs=105.2
Q ss_pred HHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCC
Q 025226 97 IKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG----KMNEAMQVWESMRKED 172 (256)
Q Consensus 97 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~g 172 (256)
++...+.|.......+=..+...+++++|++.|+...+.| ++..+..|=..|.. + +.++|.+.|++..+.|
T Consensus 9 ~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g 83 (212)
T 3rjv_A 9 YQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG 83 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC
Confidence 3444444442223345566667899999999999999887 56777777777777 6 8999999999998864
Q ss_pred CCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCC-CChhHHHHHHHHhcC----CCChHHHHHhhhhhc--CC
Q 025226 173 LFPDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPDP-PEELPFRILLKGLLP----HPLLRSKVKKDFEEL--FP 241 (256)
Q Consensus 173 ~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~~-p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~--~p 241 (256)
+...+..|=..|.. .+++++|.++|++..+.|.. .+...+..|-..|.. .++.++|++...+.+ .+
T Consensus 84 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 160 (212)
T 3rjv_A 84 ---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSR 160 (212)
T ss_dssp ---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSC
T ss_pred ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCC
Confidence 66777777777776 78999999999999887642 125666667677766 778999988333222 23
Q ss_pred CcccccchhHhh
Q 025226 242 EKHAYDPPEEIF 253 (256)
Q Consensus 242 ~~~~~~~li~~y 253 (256)
+...+..|-.+|
T Consensus 161 ~~~a~~~Lg~~y 172 (212)
T 3rjv_A 161 TGYAEYWAGMMF 172 (212)
T ss_dssp TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444444
No 145
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.50 E-value=0.0015 Score=47.25 Aligned_cols=93 Identities=11% Similarity=0.072 Sum_probs=61.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc--------CC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 113 LIELERQEETILAVKIFDIIRKQ--------DW--------YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~--------~~--------~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
=..+.+.|++++|...|.+..+. .. -..+...|..+-.+|.+.|++++|...+++..+.. +.+
T Consensus 18 G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~ 96 (162)
T 3rkv_A 18 GNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETN 96 (162)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Ccc
Confidence 34455666777777777665544 00 01234567777777778888888888887776632 124
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 177 ~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
...|..+-.+|...|++++|...|++..+.
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 567777777777888888888888776655
No 146
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.0061 Score=41.78 Aligned_cols=93 Identities=9% Similarity=-0.076 Sum_probs=72.3
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART 155 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~ 155 (256)
...-..+.+.|+.++|+..+.+......-.+... .+-.++.+.|++++|...|++..+.. .-+...|..+-.+|...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHH
Confidence 3445667889999999865544333322222222 47777889999999999999999886 56788999999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 025226 156 GKMNEAMQVWESMRKE 171 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~ 171 (256)
|++++|.+.|++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 9999999999998763
No 147
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.48 E-value=0.00044 Score=59.08 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
++|...|+...+.. ..+..+|..+-..|...|++++|.+.|++..+.
T Consensus 317 ~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 317 GHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 44444444444443 233344455555555556666666666555543
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.46 E-value=0.0038 Score=46.70 Aligned_cols=127 Identities=10% Similarity=-0.040 Sum_probs=87.1
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCC----------------cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKM----------------DIV-AVLIELERQEETILAVKIFDIIRKQDWY 138 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~ 138 (256)
+...-..+.+.|++++|+..+.+......-.| ... .+-.++.+.|++++|+..++...+..
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 118 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-- 118 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--
Confidence 33445667789999999865544343222222 122 36667788999999999999999886
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHH-HHHHHHHhC
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAM-NIYEDMIKS 206 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~-~~~~~M~~~ 206 (256)
..+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-..+...++.+++. ..|..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 668899999999999999999999999998774 34 4567777777777777777666 555655544
No 149
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.45 E-value=0.013 Score=48.35 Aligned_cols=218 Identities=10% Similarity=-0.088 Sum_probs=132.1
Q ss_pred cccCCchHHHHHHHHHhcC-CC---------ccccccccCCCCCCCCcccCcccccccccccCCCCCCccccccccchhH
Q 025226 7 SRSKIPILASIVLQNLTKN-PS---------KNFSFLAFKPKSPIVDFVAHEPILGLRQYHDGRPRGSLWRGKKLIGKEA 76 (256)
Q Consensus 7 ~~~~~~~~A~~l~~~m~~~-~~---------~~~ll~a~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~ 76 (256)
...|+++.|.+.++..... +. ++.+-..+...++...+ ...+++............ ......
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~~~~~~~~~~---~~~~~~ 96 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRS-----LALMQQTEQMARQHDVWH---YALWSL 96 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHH-----HHHHHHHHHHHHHTTCHH---HHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHH-----HHHHHHHHHHHHhcCcHH---HHHHHH
Confidence 4578888898888874332 11 11122233344555555 666654433211110000 001112
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhh---ccCC--CcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCC----CCHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVL---RLLK--MDIV----AVLIELERQEETILAVKIFDIIRKQDWYQ----PDAY 143 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~---~~~~--~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~----p~~~ 143 (256)
..+-..+...|++++|...+.+.... .+.. |... .+-..+...|++++|...+++..+.. -. ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~ 175 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL-SSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTSCGGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hccCcHHHHH
Confidence 33445677899999998554333221 2222 3222 25566788999999999999877553 11 1346
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHH-----HHHHHHHHcCChhHHHHHHHHHHhCCCCCC---hhH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS-QTYT-----EVIRGFLKDGSPADAMNIYEDMIKSPDPPE---ELP 214 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~-----~li~~~~~~g~~~~a~~~~~~M~~~g~~p~---~~t 214 (256)
+|..+-..+...|++++|...+++.....-.++. ..+. .....+...|++++|...+++..+....+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 7888888999999999999999988753111111 1222 233447799999999999998876532221 235
Q ss_pred HHHHHHHhcCCCChHHHHH
Q 025226 215 FRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~ 233 (256)
+..+...+...|++++|..
T Consensus 256 ~~~la~~~~~~g~~~~A~~ 274 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEI 274 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 6778888999999999887
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.45 E-value=0.0028 Score=45.79 Aligned_cols=100 Identities=11% Similarity=0.005 Sum_probs=75.9
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+..+-..+.+.|+.++|+..+-+......-.|+.. .+=.++...|++++|...|++..+.. +-++..|..+-.+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHH
Confidence 334445677899999999865543333222222222 46678889999999999999999886 557788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHh
Q 025226 154 RTGKMNEAMQVWESMRKEDLFPDSQ 178 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~g~~p~~~ 178 (256)
+.|++++|.+.|++..+. .||..
T Consensus 116 ~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999998884 36653
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.43 E-value=0.006 Score=44.08 Aligned_cols=95 Identities=7% Similarity=-0.057 Sum_probs=74.3
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALA 153 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~ 153 (256)
.+..+-..+.+.|++++|+..+.+......-.+... .+-.++.+.|++++|+..|++..+.. .-+...|..+-.+|.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 344456678899999999865544343322222222 47777889999999999999999886 567899999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 025226 154 RTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~~ 171 (256)
..|++++|.+.|++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 999999999999998873
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.42 E-value=0.00053 Score=51.22 Aligned_cols=115 Identities=11% Similarity=0.007 Sum_probs=86.3
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcC
Q 025226 117 ERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE----DLFP-DSQTYTEVIRGFLKDG 191 (256)
Q Consensus 117 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g 191 (256)
...|++++|.++++.+... ......+++.+-..|...|++++|.+.|++..+. +..| ....++.+-..|...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 4679999999966666543 2456789999999999999999999999988762 2222 3467888888899999
Q ss_pred ChhHHHHHHHHHHhC----CCCC--ChhHHHHHHHHhcCCCChHHHHH
Q 025226 192 SPADAMNIYEDMIKS----PDPP--EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~----g~~p--~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
++++|.+.+++..+. +-.| ....+..+-..+...|++++|.+
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999987643 2122 24557788888999999999988
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.40 E-value=0.0041 Score=43.90 Aligned_cols=92 Identities=9% Similarity=-0.068 Sum_probs=70.7
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
..-..+.+.|+.++|+..+.+......-.+... .+-.++...|++++|...|+...+.. +-+...|..+-.+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcC
Confidence 345667889999999865543333222222222 46677889999999999999999886 567788889999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 025226 157 KMNEAMQVWESMRKE 171 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~ 171 (256)
++++|.+.|++..+.
T Consensus 101 ~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 101 DLDGAESGFYSARAL 115 (142)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998763
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.40 E-value=0.0052 Score=49.61 Aligned_cols=154 Identities=14% Similarity=0.036 Sum_probs=99.4
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhh---ccCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCC--CC--CHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVL---RLLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWY--QP--DAY 143 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~--~p--~~~ 143 (256)
.+..+-..|.+.|++++|+..+.+.... .|-..... .+-..|.. |++++|++.|++..+...- .+ ...
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 3344456777889999998555332221 12111111 24455666 9999999999987654200 11 156
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh------
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKE----DLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE------ 212 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~------ 212 (256)
+|+.+-..|.+.|++++|.+.|++..+. +..++. ..+..+...+...|++++|...|++.. . .|+.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~ 233 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHH
Confidence 8889999999999999999999988762 222222 366777777888899999999999987 3 3321
Q ss_pred hHHHHHHHHhcCCCChHHHHH
Q 025226 213 LPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 213 ~t~~~li~~~~~~g~~~~a~~ 233 (256)
.....++..+ ..|+.+...+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 2345566666 4566544433
No 155
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.38 E-value=0.004 Score=44.02 Aligned_cols=126 Identities=9% Similarity=-0.112 Sum_probs=64.2
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHH
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQDWYQPD----AYIYKD 147 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~~ 147 (256)
+-..+...|+.++|+..+.+......-.++.. .+-..+...|++++|...+++..+...-.++ ...+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 34455566777776643322221111111111 2445555667777777777665433100111 345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 148 LIIALARTGKMNEAMQVWESMRKE----DLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 148 li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+-..|...|++++|.+.+++..+. +-.+ ...++..+-..|...|++++|.+.+++..
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 666666667777777766665432 1111 12345556666666677777766666544
No 156
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.38 E-value=0.0075 Score=49.71 Aligned_cols=160 Identities=11% Similarity=-0.107 Sum_probs=104.7
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-------HHHHHHHHcCCHHHHHHHHHHHHhc----CCCC--C-CHHH
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-------AVLIELERQEETILAVKIFDIIRKQ----DWYQ--P-DAYI 144 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~~~~~a~~~~~~m~~~----~~~~--p-~~~~ 144 (256)
+-..+...|+.++|...+.+......-..+.. .+-..+...|++++|...+++..+. + -. | ...+
T Consensus 59 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~ 137 (373)
T 1hz4_A 59 LGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQH-LEQLPMHEFL 137 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CTTSTHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc-cccCcHHHHH
Confidence 34556778999998754433222111111221 2556677899999999999987643 2 11 3 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCh-hHHH---
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKED--LFP--DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEE-LPFR--- 216 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~-~t~~--- 216 (256)
+..+-..|...|++++|...+++..... ..+ ...+|..+-..+...|++++|.+.+++..+..-.++. ..+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 6778888999999999999999887532 111 2356778888899999999999999988653211111 1222
Q ss_pred --HHHHHhcCCCChHHHHHhhhhhc
Q 025226 217 --ILLKGLLPHPLLRSKVKKDFEEL 239 (256)
Q Consensus 217 --~li~~~~~~g~~~~a~~~~~~~~ 239 (256)
..+..+...|++++|........
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 23344778999999988444333
No 157
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.37 E-value=0.0023 Score=54.97 Aligned_cols=118 Identities=8% Similarity=-0.038 Sum_probs=84.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD---------------AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---------------~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
+=..+.+.|++++|...|++..+.. ..+ ...|..+-.+|.+.|++++|...|++..+.. ..+
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~ 350 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SAN 350 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc
Confidence 4456677888888888888877654 222 5788888888888888888888888877642 125
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 177 SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 177 ~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
...|..+-.+|.+.|++++|...|++..+..- -+...+..+-..+.+.|+.+++.+
T Consensus 351 ~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 351 EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888888888888776521 234566667777777777666654
No 158
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.36 E-value=0.012 Score=45.06 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=90.6
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-H---HHHHHH------------------HcCCHHHHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-A---VLIELE------------------RQEETILAVKIFDII 132 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---li~~~~------------------~~~~~~~a~~~~~~m 132 (256)
.+..+...+.+.|+.++|+..+-+......-.+... + +-.++. ..|+.++|...|++.
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 344556778899999999966644343332223321 1 222222 257899999999999
Q ss_pred HhcCCCCCCHHHHH-----------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHHHHHcC
Q 025226 133 RKQDWYQPDAYIYK-----------------DLIIALARTGKMNEAMQVWESMRKEDLFPDS----QTYTEVIRGFLKDG 191 (256)
Q Consensus 133 ~~~~~~~p~~~~y~-----------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g 191 (256)
.+.. +-+...+. .+-..|.+.|++++|...|++..+. .|+. ..+..+..+|.+.|
T Consensus 123 l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g 198 (225)
T 2yhc_A 123 VRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQ 198 (225)
T ss_dssp HTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcC
Confidence 9774 22222332 3445678899999999999998874 2543 46888999999999
Q ss_pred ChhHHHHHHHHHHhCCC
Q 025226 192 SPADAMNIYEDMIKSPD 208 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~ 208 (256)
+.++|.+.++.+...+.
T Consensus 199 ~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 199 MNAQAEKVAKIIAANSS 215 (225)
T ss_dssp CHHHHHHHHHHHHHCCS
T ss_pred CcHHHHHHHHHHHhhCC
Confidence 99999999999987743
No 159
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.36 E-value=0.0013 Score=55.03 Aligned_cols=116 Identities=10% Similarity=0.023 Sum_probs=91.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHh----------------cCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 025226 112 VLIELERQEETILAVKIFDIIRK----------------QDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~----------------~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (256)
+=..+.+.|++++|.+.|++..+ .. .-+..+|..+-.+|.+.|++++|.+.+++..+. .|
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p 304 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DP 304 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cc
Confidence 45567788999999999998776 22 345678888999999999999999999998874 34
Q ss_pred -CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 176 -DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 176 -~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+...|..+-.+|.+.|++++|.+.|++..+. .| +...+..+-..+...++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999999999999999988765 23 45566667777777777666655
No 160
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.36 E-value=0.0039 Score=49.82 Aligned_cols=91 Identities=9% Similarity=-0.171 Sum_probs=61.5
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
..-..+.+.|+.++|+..+.+......-.+... .+-.++.+.|++++|...+++..+.. .-+...|..+-.+|...|
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Confidence 344566778888888754433333222222222 35666777888888888888877765 456777888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 025226 157 KMNEAMQVWESMRK 170 (256)
Q Consensus 157 ~~~~a~~~~~~m~~ 170 (256)
++++|...|++..+
T Consensus 87 ~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 SYDEAIANLQRAYS 100 (281)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888887765
No 161
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.36 E-value=0.0081 Score=45.47 Aligned_cols=133 Identities=11% Similarity=-0.003 Sum_probs=88.8
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
+-..+.+.|+.++|+..+-+......-.++.. .+-..+...|++++|...|++..+.. +-+..+|..+-..|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhH
Confidence 45677899999999865543333222222222 47777889999999999999999886 5678889888888866654
Q ss_pred --HHHHHHHHHHHHhCCCCCCHhh--HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHH
Q 025226 158 --MNEAMQVWESMRKEDLFPDSQT--YTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILL 219 (256)
Q Consensus 158 --~~~a~~~~~~m~~~g~~p~~~t--~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li 219 (256)
.+.+...++.... |+... +...-.++...|++++|...|++..+. .|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 4455666665543 55433 333334455678999999999998865 57755444433
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.35 E-value=0.0022 Score=55.51 Aligned_cols=145 Identities=14% Similarity=0.015 Sum_probs=97.3
Q ss_pred HhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 82 GLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 82 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
.+.+.|+.++|+..+.+......-.+... .+-.++.+.|++++|.+.+++..+.. .-+..+|..+-.+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Confidence 34678999999865543333222112222 46777889999999999999999886 5678899999999999999999
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHH--HHHcCChhHHHHHHH-----------HHHhC-----CC-----CCChhHHH
Q 025226 161 AMQVWESMRKEDLFPD-SQTYTEVIRG--FLKDGSPADAMNIYE-----------DMIKS-----PD-----PPEELPFR 216 (256)
Q Consensus 161 a~~~~~~m~~~g~~p~-~~t~~~li~~--~~~~g~~~~a~~~~~-----------~M~~~-----g~-----~p~~~t~~ 216 (256)
|.+.|++..+. .|+ ...+..+-.+ +.+.|++++|.+.++ +-.+. |. ..+.....
T Consensus 93 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~ 170 (477)
T 1wao_1 93 ALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMK 170 (477)
T ss_dssp HHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHH
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHH
Confidence 99999998874 243 3445555444 888899999999998 22211 11 12445566
Q ss_pred HHHHHhcCCCChHH
Q 025226 217 ILLKGLLPHPLLRS 230 (256)
Q Consensus 217 ~li~~~~~~g~~~~ 230 (256)
.++..+.+.+.+.+
T Consensus 171 ~lie~l~~~~~l~e 184 (477)
T 1wao_1 171 ELMQWYKDQKKLHR 184 (477)
T ss_dssp HHHHHHHTCCCCCH
T ss_pred HHHHHHHcCCCCCH
Confidence 77777777665443
No 163
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.30 E-value=0.0064 Score=51.73 Aligned_cols=145 Identities=8% Similarity=-0.017 Sum_probs=93.9
Q ss_pred cCCCcHHHHHHHHHHHhhc-cCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-------
Q 025226 85 RFKDDEEKLQKFIKTHVLR-LLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART------- 155 (256)
Q Consensus 85 ~~~~~~~a~~~~~~~~~~~-~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~------- 155 (256)
..++.++|...+ +..... .-.++.. .+-..+...|++++|...|++..+.. +-+..+|..+-..|...
T Consensus 225 ~~~~~~~a~~~~-~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 225 EGEEEGEGEKLV-EEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNAYLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp -----CHHHHHH-HHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHH-HHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHhhhH
Confidence 345566676433 333322 2222222 47778889999999999999998875 45667777766555432
Q ss_pred ------------CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChh--HHHHHHH-
Q 025226 156 ------------GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL--PFRILLK- 220 (256)
Q Consensus 156 ------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~--t~~~li~- 220 (256)
+..++|...|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+....|... .+..+..
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~ 380 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF 380 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33677888888776632 2345778889999999999999999999988775444322 1222222
Q ss_pred HhcCCCChHHHHH
Q 025226 221 GLLPHPLLRSKVK 233 (256)
Q Consensus 221 ~~~~~g~~~~a~~ 233 (256)
.+.+.|+.++|+.
T Consensus 381 ~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 381 QLYQMKCEDKAIH 393 (472)
T ss_dssp HHHTSSCHHHHHH
T ss_pred HHHHCCCHHHHHH
Confidence 2346788888887
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.26 E-value=0.0019 Score=44.93 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCC--CCCC----hhHH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSP--DPPE----ELPF 215 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g--~~p~----~~t~ 215 (256)
.++..+=..|.+.|++++|.+.|++..+. .| +...|+.+-..|.+.|++++|.+.|++..+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45667778889999999999999998874 35 46788899999999999999999999887541 1222 2356
Q ss_pred HHHHHHhcCCCChHHHHHhhh--hhcCCCccccc
Q 025226 216 RILLKGLLPHPLLRSKVKKDF--EELFPEKHAYD 247 (256)
Q Consensus 216 ~~li~~~~~~g~~~~a~~~~~--~~~~p~~~~~~ 247 (256)
..+-..+...|++++|++... -...||+.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 677778889999999998333 23456655433
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00041 Score=46.41 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=35.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+-..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|.+.|++..+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 10 QGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344555666666666666666554 44566666666666666666666666666655
No 166
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.25 E-value=0.00061 Score=48.44 Aligned_cols=122 Identities=11% Similarity=-0.082 Sum_probs=91.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HhhHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD----AYIYKDLIIALARTGKMNEAMQVWESMRKED-LFPD----SQTYTE 182 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~t~~~ 182 (256)
+-..+...|++++|...+++..+...-.++ ..++..+-..|...|++++|.+.+++..+.. -.++ ...+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 556677899999999999987654200122 2578888999999999999999999876521 0112 456778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC----CCC-CChhHHHHHHHHhcCCCChHHHHH
Q 025226 183 VIRGFLKDGSPADAMNIYEDMIKS----PDP-PEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~M~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+-..|...|++++|.+.+++..+. +-. .....+..+-..|...|++++|.+
T Consensus 95 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 150 (164)
T 3ro3_A 95 LGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHH
Confidence 888899999999999999987643 221 224567788888999999999988
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.23 E-value=0.0051 Score=42.33 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=70.8
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
+...-..+.+.|+.++|+..+-+......-.+... .+=.++...|++++|+..|++..+.. .-+...|..+-..|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 34445677899999999865543333222222222 35667788999999999999999886 5578899999999999
Q ss_pred cCCHHHHHHHHHHHHh
Q 025226 155 TGKMNEAMQVWESMRK 170 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~ 170 (256)
.|++++|.+.|++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999876
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.22 E-value=0.0033 Score=50.36 Aligned_cols=134 Identities=9% Similarity=-0.079 Sum_probs=91.3
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC--HHHHHHHHHHH
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPD--AYIYKDLIIAL 152 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~~ 152 (256)
.....+...|++++|.+ .++.....+ |+.. .+-..+.+.+++++|+..|+...+.. .|. ...+..+=.++
T Consensus 107 ayA~~L~~~g~y~eA~~-~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 107 GFAACEAAQGNYADAME-ALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHTCHHHHHH-HHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHH-HHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHHHHHHHHHHH
Confidence 34566788999999974 444443322 4332 34446778999999999998544321 121 23677777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPD--SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
...|++++|.+.|++.......|. .......-.++.+.|+.++|..+|+++... .|+...+..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 999999999999999875433354 234555666677899999999999999987 3443333333
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.22 E-value=0.023 Score=38.73 Aligned_cols=96 Identities=17% Similarity=0.080 Sum_probs=70.8
Q ss_pred HHHHhhcCCCcHHHHHHHHHHHhhccCCC---cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHH
Q 025226 79 VILGLKRFKDDEEKLQKFIKTHVLRLLKM---DIV-AVLIELERQEETILAVKIFDIIRKQDWYQPD---AYIYKDLIIA 151 (256)
Q Consensus 79 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~ 151 (256)
.-..+.+.|+.++|+..+.+......-.+ ... .+-.++.+.|++++|...|+...+.. +-+ ...+..+-.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHH
Confidence 34566789999999865543333332223 122 46677889999999999999998875 333 6778888899
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 025226 152 LARTGKMNEAMQVWESMRKEDLFPDSQ 178 (256)
Q Consensus 152 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 178 (256)
|...|++++|.+.|++..+. .|+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 99999999999999998874 25543
No 170
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.14 E-value=0.0074 Score=40.68 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 124 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
+|++.|++..+.. ..+...|..+-..|...|++++|.+.|++..+.. ..+...|..+-..|.+.|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556666666554 4566777777777777777777777777766532 123556667777777777777777777766
Q ss_pred HhC
Q 025226 204 IKS 206 (256)
Q Consensus 204 ~~~ 206 (256)
.+.
T Consensus 80 l~~ 82 (115)
T 2kat_A 80 LAA 82 (115)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.13 E-value=0.002 Score=43.95 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=68.0
Q ss_pred CCCcHHHHHHHHHHHhhccC-CCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLL-KMDIV----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~-~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
.|+.++|+..+ +...+.+. .|+.. .+-..+...|++++|...|++..+.. +-+..+|..+-.+|...|++++
T Consensus 3 ~g~~~~A~~~~-~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYY-EKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHH-HHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHH-HHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 46666776433 44444321 13322 37777889999999999999999886 5678899999999999999999
Q ss_pred HHHHHHHHHhC-CCCCCHhhHHHHHHHHH
Q 025226 161 AMQVWESMRKE-DLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 161 a~~~~~~m~~~-g~~p~~~t~~~li~~~~ 188 (256)
|.+.|++..+. .-.|+...|...|..|.
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~ 108 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYA 108 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 99999988764 22233444444444443
No 172
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.08 E-value=0.0087 Score=54.09 Aligned_cols=174 Identities=16% Similarity=0.123 Sum_probs=116.0
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhcc---------CCCc-----------H----HHHHHHHHHcCCHHHHHHHHHHH
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLRL---------LKMD-----------I----VAVLIELERQEETILAVKIFDII 132 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~-----------~----~~li~~~~~~~~~~~a~~~~~~m 132 (256)
...+...-+.|+.++|- .+++...... -.|+ . ...++...+.|+++.|..+|+..
T Consensus 382 l~~a~~ee~~~~~e~aR-~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIE-TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHTTCHHHHH-HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33445556678888876 4445544321 0131 1 13566667789999999999999
Q ss_pred Hhc-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-
Q 025226 133 RKQ-DWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP- 210 (256)
Q Consensus 133 ~~~-~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p- 210 (256)
.+. +...+......+.+.-.+ .++.+.|.++|+...+. +.-+...|...+.-....|+.+.|..+|++..+....|
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~ 538 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH 538 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred HHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 876 423344444444444222 35699999999988875 33356667888888888999999999999988764322
Q ss_pred -ChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCcccccchhHhh
Q 025226 211 -EELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYDPPEEIF 253 (256)
Q Consensus 211 -~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~~li~~y 253 (256)
....|...++--.+.|..+.+.+ .......|+......+++=|
T Consensus 539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 44678888888889998887766 34445567665554455444
No 173
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.01 E-value=0.022 Score=40.90 Aligned_cols=98 Identities=11% Similarity=-0.052 Sum_probs=73.6
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHhhc--------cC-------CCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 025226 77 LFVILGLKRFKDDEEKLQKFIKTHVLR--------LL-------KMDIV----AVLIELERQEETILAVKIFDIIRKQDW 137 (256)
Q Consensus 77 ~~~i~~~~~~~~~~~a~~~~~~~~~~~--------~~-------~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~ 137 (256)
...-..+.+.|++++|+..+.+..... .. .|... .+-.++.+.|++++|+..++...+..
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~- 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE- 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Confidence 334567788999999986554333320 00 12222 36667888999999999999999886
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQ 178 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 178 (256)
+.+...|..+-.+|...|++++|...|++..+. .|+..
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 668899999999999999999999999998873 46543
No 174
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.94 E-value=0.02 Score=49.07 Aligned_cols=126 Identities=12% Similarity=-0.034 Sum_probs=92.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCC---------------cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKM---------------DIV-AVLIELERQEETILAVKIFDIIRKQDWYQ 139 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 139 (256)
+...-..+.+.|++++|+..+.+......-.+ ... .+-.++.+.|++++|+..|++..+.. .
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p 348 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--S 348 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C
Confidence 33445678889999999865544333222211 111 36667789999999999999999886 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHH-HHHHHHHh
Q 025226 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAM-NIYEDMIK 205 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~-~~~~~M~~ 205 (256)
.+...|..+-.+|...|++++|...|++..+. .| +...+..+-..+.+.|+.+++. ..+.+|..
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999998874 35 4567888888888888888765 45566643
No 175
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0029 Score=42.08 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
++...|..+-..+.+.|++++|.+.|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778888899999999999999999988742 225788888999999999999999999998876
No 176
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.84 E-value=0.023 Score=41.30 Aligned_cols=106 Identities=16% Similarity=0.082 Sum_probs=78.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCC
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQP-----DA-----YIYKDLIIALARTGKMNEAMQVWESMRKE-----DLFPD 176 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~-----~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~ 176 (256)
.=+.+.+.|++++|+..|++..+..+-.| +. ..|+.+-.++.+.|++++|...+++..+. .+.||
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 44566788999999999998876641111 23 38999999999999999999999988873 22675
Q ss_pred H-hhH----HHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCChhHHHH
Q 025226 177 S-QTY----TEVIRGFLKDGSPADAMNIYEDMIK-----SPDPPEELPFRI 217 (256)
Q Consensus 177 ~-~t~----~~li~~~~~~g~~~~a~~~~~~M~~-----~g~~p~~~t~~~ 217 (256)
- ..| ...=.++...|++++|+..|++-.+ .|+.+......-
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 3 567 7777888899999999999998764 366655444433
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.83 E-value=0.021 Score=47.54 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=86.2
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhc-------------cCCCcHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLR-------------LLKMDIV----AVLIELERQEETILAVKIFDIIRKQDWY 138 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~ 138 (256)
+...-..+.+.|+.++|+..+.+..... ...|... .+-.++.+.|++++|++.+++..+..
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 303 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-- 303 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--
Confidence 4445567788999999986554333210 0223222 36667788999999999999999875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~ 197 (256)
.-+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-..+.+.++.+++.
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 557889999999999999999999999998874 35 4566666666666666666554
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=96.80 E-value=0.0098 Score=47.62 Aligned_cols=126 Identities=10% Similarity=-0.036 Sum_probs=94.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----hhHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS----QTYTEVIRG 186 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~ 186 (256)
.+-..+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|++.... |+. ..+..+=.+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CCcccHHHHHHHHHHH
Confidence 46777888999999999999988664 54445555666889999999999999866553 332 356777788
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC--hhHHHHHHHHhcCCCChHHHHHh--hhhhcCCC
Q 025226 187 FLKDGSPADAMNIYEDMIKSPDPPE--ELPFRILLKGLLPHPLLRSKVKK--DFEELFPE 242 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~--~~~~~~p~ 242 (256)
+.+.|++++|++.|++-......|. .......-.++.+.|+.++|... ......|+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 9999999999999999886544365 23455666778899999999883 23344555
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.023 Score=47.60 Aligned_cols=154 Identities=8% Similarity=-0.095 Sum_probs=105.3
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCc------------------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMD------------------IVAVLIELERQEETILAVKIFDIIRKQDWYQPD 141 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 141 (256)
...+.+.|+.++|++.+.+......-..+ ...+...|.+.|++++|.+.+....+.-.-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567889999999766544433221111 224788899999999999999987653211223
Q ss_pred HHH----HHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhC--CC--
Q 025226 142 AYI----YKDLIIALARTGKMNEAMQVWESMRK----EDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKS--PD-- 208 (256)
Q Consensus 142 ~~~----y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~--g~-- 208 (256)
..+ .+.+=..+...|+.++|.+++++... .+..+. ..++..+...|...|++++|..++.+.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 222 22222233345899999999988764 233333 457788999999999999999999987643 22
Q ss_pred CC-ChhHHHHHHHHhcCCCChHHHHH
Q 025226 209 PP-EELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 209 ~p-~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+| ....|..+.+.|...|++++|..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~ 196 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKA 196 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHH
Confidence 22 23467888899999999999887
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.72 E-value=0.028 Score=48.79 Aligned_cols=92 Identities=8% Similarity=-0.151 Sum_probs=58.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc-----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-hh
Q 025226 113 LIELERQEETILAVKIFDIIRKQ-----DWYQP-DAYIYKDLIIALARTGKMNEAMQVWESMRKE-----D-LFPDS-QT 179 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~-----~~~~p-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~-~t 179 (256)
+..+...|++++|+.++++..+. |.--| ...+++.|...|...|++++|..++++..+- | -.|++ .+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34455677777777777665432 11112 2356777777777777777777777766531 2 23333 56
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 180 YTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 180 ~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
++.|-..|...|++++|..++++-.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777777777777777654
No 181
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.69 E-value=0.036 Score=34.97 Aligned_cols=55 Identities=16% Similarity=0.188 Sum_probs=27.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
..+...|++++|...|++..+.. ..+...|..+-..|.+.|++++|.+.|++..+
T Consensus 17 ~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 17 NAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444555555555555554443 33444555555555555555555555555444
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.60 E-value=0.043 Score=43.64 Aligned_cols=90 Identities=9% Similarity=-0.080 Sum_probs=78.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHc
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKD 190 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~ 190 (256)
+-..+.+.|++++|...|++..+.. .-+...|..+-..|.+.|++++|.+.+++..+. .| +...|..+-..|.+.
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~ 85 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEM 85 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 5567788999999999999998875 558899999999999999999999999998874 34 567888899999999
Q ss_pred CChhHHHHHHHHHHh
Q 025226 191 GSPADAMNIYEDMIK 205 (256)
Q Consensus 191 g~~~~a~~~~~~M~~ 205 (256)
|++++|...|.+..+
T Consensus 86 g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 86 ESYDEAIANLQRAYS 100 (281)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988664
No 183
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.58 E-value=0.027 Score=48.19 Aligned_cols=90 Identities=8% Similarity=0.069 Sum_probs=47.1
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 025226 112 VLIELERQE---ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART----GKMNEAMQVWESMRKEDLFPDSQTYTEVI 184 (256)
Q Consensus 112 li~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li 184 (256)
|-..|.+.| +.++|++.|....+.| .++...+..+-..|... ++.++|.+.|++.. . -+...+..|=
T Consensus 182 Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg 255 (452)
T 3e4b_A 182 LATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLA 255 (452)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHH
Confidence 444445556 6666666666666665 44555444444444333 46666666666654 2 2333333333
Q ss_pred HH-H--HHcCChhHHHHHHHHHHhCC
Q 025226 185 RG-F--LKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 185 ~~-~--~~~g~~~~a~~~~~~M~~~g 207 (256)
.. | ...++.++|.++|++-.+.|
T Consensus 256 ~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 256 QLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp HHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 33 2 23556666666666655554
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.55 E-value=0.021 Score=36.16 Aligned_cols=80 Identities=15% Similarity=0.218 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 141 DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 141 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
+...|..+-..|...|++++|.+.|++..+.. +.+...|..+-..|.+.|++++|...|++..+... -+...+..+-.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 35677888888999999999999999987742 22567888888999999999999999999876521 13444444444
Q ss_pred Hh
Q 025226 221 GL 222 (256)
Q Consensus 221 ~~ 222 (256)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.54 E-value=0.11 Score=36.39 Aligned_cols=112 Identities=9% Similarity=-0.043 Sum_probs=77.2
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR----TGKMNEAM 162 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~----~g~~~~a~ 162 (256)
++.++|+ .+++...+.|. |+.. +=..|...+.+++|++.|+...+.| ++..+..|=..|.. .++.++|.
T Consensus 9 ~d~~~A~-~~~~~aa~~g~-~~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAI-QYYVKACELNE-MFGC-LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHH-HHHHHHHHTTC-TTHH-HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHH-HHHHHHHcCCC-Hhhh-HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3456666 34445555553 3333 3334444566777888888887776 66777777777777 78888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 025226 163 QVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPADAMNIYEDMIKSPD 208 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~M~~~g~ 208 (256)
+.|++..+.| +...+..|=..|.. .++.++|.++|++-.+.|.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 8888887763 56667777777777 7788888888888777764
No 186
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.54 E-value=0.013 Score=50.11 Aligned_cols=87 Identities=7% Similarity=-0.004 Sum_probs=68.0
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCCCH-hhHHHHHH
Q 025226 119 QEETILAVKIFDIIRKQ-----DWYQPD-AYIYKDLIIALARTGKMNEAMQVWESMRKE-----D-LFPDS-QTYTEVIR 185 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~-----~~~~p~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~-~t~~~li~ 185 (256)
.|++++|+.++++..+. |.--|+ ..+++.|-..|...|++++|+.++++..+- | -.|++ .+|+.|=.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46889999999876542 212233 378999999999999999999999987641 2 34544 67999999
Q ss_pred HHHHcCChhHHHHHHHHHHh
Q 025226 186 GFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 186 ~~~~~g~~~~a~~~~~~M~~ 205 (256)
.|...|++++|..++++-.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999987654
No 187
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.52 E-value=0.053 Score=49.03 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=106.8
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhc-c-CCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLR-L-LKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
.|...+....+.++.+.|.. ++....+. + ..+.+. +.|. +...++.+.|..+|+...+. +.-+...|...+
T Consensus 436 vWi~y~~~erR~~~l~~AR~-vf~~A~~~~~~~~~~lyi~~A~lE-~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~ 511 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRK-IFGKCRRLKKLVTPDIYLENAYIE-YHISKDTKTACKVLELGLKY--FATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHH-HHHHHHHTGGGSCTHHHHHHHHHH-HTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH-HHHHHHHhcCCCChHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHH
Confidence 45555665566788888864 44555443 2 223333 1222 12235699999999998877 466788888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCC
Q 025226 150 IALARTGKMNEAMQVWESMRKEDLFP--DSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 150 ~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g 226 (256)
......|+.+.|..+|++.....-.+ ....|...+.--.+.|+.+.+..+.++|.+. .|+......+++-|.-.+
T Consensus 512 ~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~~~ 588 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKVLD 588 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCBTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcCCc
Confidence 99999999999999999988754322 3478999999999999999999999999987 466677777788776554
No 188
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=96.47 E-value=0.016 Score=49.68 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc----CChhHHHHHHHHHHhCCCCCChhHHH
Q 025226 144 IYKDLIIALARTG---KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD----GSPADAMNIYEDMIKSPDPPEELPFR 216 (256)
Q Consensus 144 ~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~M~~~g~~p~~~t~~ 216 (256)
.+..|-..|...| +.++|.+.|++..+.|- ++...+..|-..|... ++.++|.++|++.. .| +...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHH
Confidence 7777777777788 88888888888777653 4444445555566544 57888888888877 33 344444
Q ss_pred HHHHH-h--cCCCChHHHHHhhhhh
Q 025226 217 ILLKG-L--LPHPLLRSKVKKDFEE 238 (256)
Q Consensus 217 ~li~~-~--~~~g~~~~a~~~~~~~ 238 (256)
.|-.. | ...|+.++|++...+.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~A 277 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNG 277 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 44444 3 4577888888743333
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.46 E-value=0.018 Score=49.97 Aligned_cols=81 Identities=5% Similarity=-0.114 Sum_probs=56.3
Q ss_pred HhcCCHHHHHHHHHHHHhC---CCC---CC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----CC-CC-ChhHHHHH
Q 025226 153 ARTGKMNEAMQVWESMRKE---DLF---PD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKS-----PD-PP-EELPFRIL 218 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~---g~~---p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~-----g~-~p-~~~t~~~l 218 (256)
-..|++++|+.++++..+. -+. |+ ..+++.|...|...|++++|..++++..+. |- -| ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3557788888888776542 222 32 367888888888888888888888876532 22 12 34567788
Q ss_pred HHHhcCCCChHHHHH
Q 025226 219 LKGLLPHPLLRSKVK 233 (256)
Q Consensus 219 i~~~~~~g~~~~a~~ 233 (256)
-..|...|++++|..
T Consensus 400 a~~~~~~G~~~eA~~ 414 (490)
T 3n71_A 400 GLTNWHAGHIEVGHG 414 (490)
T ss_dssp HHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHH
Confidence 888888888888877
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.12 Score=43.19 Aligned_cols=157 Identities=6% Similarity=-0.106 Sum_probs=109.5
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH------HHHHHHH-HcCCHHHHHHHHHHHHh----cCCCCCC-HH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV------AVLIELE-RQEETILAVKIFDIIRK----QDWYQPD-AY 143 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~li~~~~-~~~~~~~a~~~~~~m~~----~~~~~p~-~~ 143 (256)
...+...|.+.|+++++.+.+.......+-.++.. ..+..+. ..|+.++|..++..... .+ ..+. ..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-RVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-CCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 44567888999999999865543333223223322 1233332 35789999999887653 33 2333 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC--C-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC--h
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKE--DLF--P-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS----PDPPE--E 212 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~--p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~----g~~p~--~ 212 (256)
++..+...|...|++++|..++++.... +.. | ....|..++..|...|++++|..++++.... +..|. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7888999999999999999999987653 221 2 2467899999999999999999999887642 22221 3
Q ss_pred hHHHHHHHHhcCCCChHHHHH
Q 025226 213 LPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 213 ~t~~~li~~~~~~g~~~~a~~ 233 (256)
..+..+...+...|++++|..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~ 237 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFS 237 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH
Confidence 566777788889999999877
No 191
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.42 E-value=0.033 Score=47.48 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=74.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCH-h
Q 025226 112 VLIELERQEETILAVKIFDIIRKQD--WYQP----DAYIYKDLIIALARTGKMNEAMQVWESMRKE------DLFPDS-Q 178 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~--~~~p----~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~-~ 178 (256)
.+..+.+.|++++|+.++++..+.. .+.| ...+++.+...|...|++++|+.++++...- .-.|++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4666778899999999999887441 0122 2468999999999999999999999987641 234543 7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 179 TYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 179 t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
+++.|-..|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 799999999999999999999988654
No 192
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.37 E-value=0.016 Score=37.72 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=41.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAY-IYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
-..+.+.|++++|.+.|++..+.. ..+.. .|..+-.+|...|++++|.+.|++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345667788888888888877764 44556 7777777788888888888888877763
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.36 E-value=0.033 Score=37.34 Aligned_cols=58 Identities=21% Similarity=0.107 Sum_probs=51.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
.+-..+...|++++|...|++..+.. ..+...|..+-..|...|++++|...|++..+
T Consensus 24 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 24 TLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677889999999999999999886 56788999999999999999999999998876
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.32 E-value=0.032 Score=36.61 Aligned_cols=60 Identities=17% Similarity=0.267 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 025226 142 AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDM 203 (256)
Q Consensus 142 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M 203 (256)
...|..+-..|...|++++|.+.|++..+.. | +...|..+-..|.+.|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444445555544444444321 2 2334444444444445555444444443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.29 E-value=0.02 Score=37.66 Aligned_cols=58 Identities=16% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
.+-..+.+.|++++|...|++..+.. .-+...|..+-.+|...|++++|.+.|++..+
T Consensus 12 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 12 ALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46677888999999999999999886 45677899999999999999999999998775
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.27 E-value=0.019 Score=41.72 Aligned_cols=99 Identities=12% Similarity=0.003 Sum_probs=57.7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK----------MNEAMQVWESMRKEDLFPD-SQTYTEVIRG 186 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~-~~t~~~li~~ 186 (256)
+.+.+++|.+.++...+.. .-+...|+.+=.++...++ +++|...|++..+. .|+ ...|..+=.+
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 4445666666666666664 4456666655555555544 34666666666652 343 4556666666
Q ss_pred HHHc-----------CChhHHHHHHHHHHhCCCCCChhHHHHHHHHh
Q 025226 187 FLKD-----------GSPADAMNIYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 187 ~~~~-----------g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
|... |++++|.+.|++..+. .|+...|..-++..
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 6654 3677777777766654 45555554444433
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.26 E-value=0.026 Score=46.28 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
+.+.|++++|+..++...+.. ..+...|..+-.+|...|++++|.+.|++..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334445555555555444443 2344444444444555555555555554443
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.26 E-value=0.1 Score=36.56 Aligned_cols=103 Identities=9% Similarity=-0.040 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCChh
Q 025226 119 QEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK----DGSPA 194 (256)
Q Consensus 119 ~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~ 194 (256)
.++.++|++.|.+..+.| .|+.. |=..|...+.+++|.+.|++..+.| +...+..|=..|.. .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence 357899999999999998 55555 5566667788999999999998864 67788888888888 78999
Q ss_pred HHHHHHHHHHhCCCCCChhHHHHHHHHhcC----CCChHHHHH
Q 025226 195 DAMNIYEDMIKSPDPPEELPFRILLKGLLP----HPLLRSKVK 233 (256)
Q Consensus 195 ~a~~~~~~M~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~ 233 (256)
+|.++|++-.+.| +...+..|-..|.. .++.++|++
T Consensus 79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 118 (138)
T 1klx_A 79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVK 118 (138)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHH
Confidence 9999999998886 45666666666666 789999888
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.98 E-value=0.018 Score=47.22 Aligned_cols=61 Identities=11% Similarity=0.055 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
.|..+-.+|.+.|++++|...|++..+. .| +...|..+-.+|...|++++|...|++..+.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888899999999999999999998874 34 6788999999999999999999999998765
No 200
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.66 E-value=0.32 Score=35.23 Aligned_cols=109 Identities=15% Similarity=0.048 Sum_probs=74.0
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCC-----c-------HH-HHHHHHHHcCCHHHHHHHHHHHHhc----CCC
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKM-----D-------IV-AVLIELERQEETILAVKIFDIIRKQ----DWY 138 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-------~~-~li~~~~~~~~~~~a~~~~~~m~~~----~~~ 138 (256)
+...-..+.+.|++++|+..+-+.+.-..-.| + .. .+=.++.+.|++++|+..++...+. +.+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 34445667889999999966644333221111 1 22 3666788899999999999988876 112
Q ss_pred CC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHH
Q 025226 139 QP-DAYIY----KDLIIALARTGKMNEAMQVWESMRK-----EDLFPDSQTYTEVI 184 (256)
Q Consensus 139 ~p-~~~~y----~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~~li 184 (256)
.| +...| ...=.++...|++++|...|++..+ .|+.+........|
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 34 45677 8888899999999999999998865 35555544433333
No 201
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=95.62 E-value=0.17 Score=40.98 Aligned_cols=211 Identities=7% Similarity=-0.007 Sum_probs=133.3
Q ss_pred cCCchHHHHHHHHHhcCC--C---ccccccccCCCC--CCCCcccCcccccccccccCCCCC-CccccccccchhHHHHH
Q 025226 9 SKIPILASIVLQNLTKNP--S---KNFSFLAFKPKS--PIVDFVAHEPILGLRQYHDGRPRG-SLWRGKKLIGKEALFVI 80 (256)
Q Consensus 9 ~~~~~~A~~l~~~m~~~~--~---~~~ll~a~~~~~--~~~~~~~~~~~~~~~~m~~~~~~~-~~~~~~~~~~~~~~~~i 80 (256)
....+.|+++.+.+..-. . |+.--..+...+ .+.+. +..+..+....+.. ..|..+..+ ...++
T Consensus 46 ~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~ee-----L~~~~~~L~~nPk~y~aW~~R~~i---L~~~~ 117 (306)
T 3dra_A 46 EEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDE-----LDWCEEIALDNEKNYQIWNYRQLI---IGQIM 117 (306)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHH-----HHHHHHHHHHCTTCCHHHHHHHHH---HHHHH
T ss_pred CCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHH-----HHHHHHHHHHCcccHHHHHHHHHH---HHHHH
Confidence 334457888888764322 2 333222222222 44444 77777766544332 122222210 00001
Q ss_pred HHhhcCCCcHHHHHHHHHHHhhccCCCcHH-H---HHHHHHHcCCHH--HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 025226 81 LGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-A---VLIELERQEETI--LAVKIFDIIRKQDWYQPDAYIYKDLIIALAR 154 (256)
Q Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~---li~~~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~ 154 (256)
......++.++++ .+++.+.+.. |... + ---.+.+.|.++ ++++.++.+.+.. .-|-..|+.--..+.+
T Consensus 118 ~~l~~~~~~~~EL-~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 118 ELNNNDFDPYREF-DILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHTTTCCCTHHHH-HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHS
T ss_pred HhccccCCHHHHH-HHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHh
Confidence 2221226788888 4556665533 3222 2 122233456666 9999999999987 6788999988777777
Q ss_pred cCC------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChh-HHHHHHHHHHhCC--CCCChhHHHHHHHHhcCC
Q 025226 155 TGK------MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA-DAMNIYEDMIKSP--DPPEELPFRILLKGLLPH 225 (256)
Q Consensus 155 ~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-~a~~~~~~M~~~g--~~p~~~t~~~li~~~~~~ 225 (256)
.+. ++++.+.++++..... -|...|+-+-..+.+.|+.. .+.++..+..+.+ -..++..+..+.+.|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 776 8999999998887532 37889999888888888754 4667777776543 235778889999999999
Q ss_pred CChHHHHH
Q 025226 226 PLLRSKVK 233 (256)
Q Consensus 226 g~~~~a~~ 233 (256)
|+.++|++
T Consensus 272 ~~~~~A~~ 279 (306)
T 3dra_A 272 KKYNESRT 279 (306)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 99999998
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.45 E-value=0.057 Score=46.04 Aligned_cols=80 Identities=11% Similarity=-0.023 Sum_probs=63.9
Q ss_pred hcCCHHHHHHHHHHHHh---CCCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----CC-CC-ChhHHHHHH
Q 025226 154 RTGKMNEAMQVWESMRK---EDLFPD----SQTYTEVIRGFLKDGSPADAMNIYEDMIKS-----PD-PP-EELPFRILL 219 (256)
Q Consensus 154 ~~g~~~~a~~~~~~m~~---~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~M~~~-----g~-~p-~~~t~~~li 219 (256)
..|++++|+.++++..+ .-+.|+ ..+++.|-..|...|++++|..++++..+. |- -| ...+++.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35789999999998765 223333 378999999999999999999999987642 32 23 356789999
Q ss_pred HHhcCCCChHHHHH
Q 025226 220 KGLLPHPLLRSKVK 233 (256)
Q Consensus 220 ~~~~~~g~~~~a~~ 233 (256)
..|...|++++|..
T Consensus 390 ~~~~~qg~~~eA~~ 403 (433)
T 3qww_A 390 RLYMGLENKAAGEK 403 (433)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhccCHHHHHH
Confidence 99999999999988
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.32 E-value=0.088 Score=44.80 Aligned_cols=85 Identities=13% Similarity=0.110 Sum_probs=68.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHHcCChhHHHHHHHHHHhC-----CC-CC-ChhH
Q 025226 149 IIALARTGKMNEAMQVWESMRKE---DLFPD----SQTYTEVIRGFLKDGSPADAMNIYEDMIKS-----PD-PP-EELP 214 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~M~~~-----g~-~p-~~~t 214 (256)
+..+.+.|++++|++++++..+. -+.|+ ..+++.|...|...|++++|..++++..+. |- -| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55566789999999999998753 23333 468999999999999999999999987642 21 23 4567
Q ss_pred HHHHHHHhcCCCChHHHHH
Q 025226 215 FRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 215 ~~~li~~~~~~g~~~~a~~ 233 (256)
++.|-..|...|++++|..
T Consensus 374 l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHH
Confidence 8899999999999999988
No 204
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.05 E-value=0.21 Score=35.81 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHcCChhHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG---KMNEAMQVWESMRKEDLFP--DSQTYTEVIRGFLKDGSPADAM 197 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~a~ 197 (256)
..+.+-|.+-.+.| .++..+--.+-.++++++ +.+++..+|++..+.+ .| +...+=.|=-+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 34444444444444 244444444444555544 3445555555544432 12 1111112222334555555555
Q ss_pred HHHHHHHhC
Q 025226 198 NIYEDMIKS 206 (256)
Q Consensus 198 ~~~~~M~~~ 206 (256)
+.++...+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555443
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=94.56 E-value=0.28 Score=40.68 Aligned_cols=123 Identities=12% Similarity=0.008 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh----cC-CHHHHH---HHHHHHHhC-CCCCCHhhHHHHHHHHHHcC
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALAR----TG-KMNEAM---QVWESMRKE-DLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~----~g-~~~~a~---~~~~~m~~~-g~~p~~~t~~~li~~~~~~g 191 (256)
++.+|..+|++..+.. +-....|..+--+|.- .+ .-.... .-++..... .-..+..+|.++--.+...|
T Consensus 214 ~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~g 291 (372)
T 3ly7_A 214 SLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKG 291 (372)
T ss_dssp HHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCC
Confidence 4689999999999885 3344555544444431 11 111111 222221111 22457788888877777789
Q ss_pred ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH--hhhhhcCCCccccc
Q 025226 192 SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK--KDFEELFPEKHAYD 247 (256)
Q Consensus 192 ~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~--~~~~~~~p~~~~~~ 247 (256)
++++|...+++..+.+ |+...|..+=..+.-.|+.++|.+ .....+.|...||.
T Consensus 292 d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 292 KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 9999999999999886 888888777888889999999999 44456677766664
No 206
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=94.54 E-value=1.4 Score=35.55 Aligned_cols=154 Identities=11% Similarity=0.102 Sum_probs=102.3
Q ss_pred hHHHHHHHhhcCC--CcHHHHHHHHHHHhhccCCCcHH-----HHHHHH-HHc---CCHHHHHHHHHHHHhcCCCCCCHH
Q 025226 75 EALFVILGLKRFK--DDEEKLQKFIKTHVLRLLKMDIV-----AVLIEL-ERQ---EETILAVKIFDIIRKQDWYQPDAY 143 (256)
Q Consensus 75 ~~~~~i~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~-~~~---~~~~~a~~~~~~m~~~~~~~p~~~ 143 (256)
.|...=..+...+ +.++++ .+.+......-+--.. -++..+ .+. +++++++.+++.+.+.. .-|-.
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL-~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~ 145 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDEL-DWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--PKNHH 145 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHH-HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHcccccHHHHH-HHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHH
Confidence 3444333444555 788887 4545554433222111 244222 333 78899999999998886 67888
Q ss_pred HHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC------hhHHHHHHHHHHhCCCCCChhHH
Q 025226 144 IYKDLIIALARTGKMN--EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS------PADAMNIYEDMIKSPDPPEELPF 215 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~------~~~a~~~~~~M~~~g~~p~~~t~ 215 (256)
+|+----.+.+.|.++ ++.+.++++.+... -|...|+.--..+.+.|. ++++++.+.++.... .-|...|
T Consensus 146 aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW 223 (306)
T 3dra_A 146 VWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHH
Confidence 9988888888888888 89999999987543 367777766666666665 788888888877653 2367777
Q ss_pred HHHHHHhcCCCChHHHHH
Q 025226 216 RILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 216 ~~li~~~~~~g~~~~a~~ 233 (256)
+..-..+.+.|+..+.+.
T Consensus 224 ~y~~~ll~~~~~~~~~~~ 241 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLE 241 (306)
T ss_dssp HHHHHHHHHTTCCGGGGH
T ss_pred HHHHHHHHhcCCChHHHH
Confidence 777777777776444443
No 207
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.42 E-value=0.6 Score=42.44 Aligned_cols=104 Identities=7% Similarity=-0.059 Sum_probs=60.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCh
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSP 193 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 193 (256)
......|++++|+++.+. ..+...|..+-..+.+.|+++.|++.|.++.. |..+...|...|+.
T Consensus 660 ~~~l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~ 723 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNK 723 (814)
T ss_dssp HHHHHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCH
T ss_pred ehhhhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCH
Confidence 334556677777666432 34778999999999999999999999998765 23333444444444
Q ss_pred hHHHHHHHHHHhCCCCCC-------hhHHHHHHHHhcCCCChHHHHH
Q 025226 194 ADAMNIYEDMIKSPDPPE-------ELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 194 ~~a~~~~~~M~~~g~~p~-------~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+....+-+.....|-.-. ..-+...++.|.+.+++++|+.
T Consensus 724 ~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~ 770 (814)
T 3mkq_A 724 EGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAF 770 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHH
Confidence 443333333332221000 1123445556666666666666
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.26 E-value=0.14 Score=37.01 Aligned_cols=113 Identities=17% Similarity=0.023 Sum_probs=74.6
Q ss_pred hcCCCcHHHHHHHHHHHhhccCCCcHHH-HHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 84 KRFKDDEEKLQKFIKTHVLRLLKMDIVA-VLIELERQEE----------TILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 84 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-li~~~~~~~~----------~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.+.+.+++|+..+........-.++... +=.++...++ +++|+..|++..+.. .-+..+|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHHH
Confidence 3455567776555433333333333332 3334444443 579999999999886 55778999999999
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 153 ARTG-----------KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 153 ~~~g-----------~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
...| ++++|.+.|++..+ +.|+...|..-+.. .++|-+++-+....
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 8764 89999999999887 46887777666554 34555555555444
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.17 E-value=0.61 Score=29.72 Aligned_cols=57 Identities=25% Similarity=0.337 Sum_probs=47.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHh-hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 025226 149 IIALARTGKMNEAMQVWESMRKEDLFP-DSQ-TYTEVIRGFLKDGSPADAMNIYEDMIKSP 207 (256)
Q Consensus 149 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~-t~~~li~~~~~~g~~~~a~~~~~~M~~~g 207 (256)
-..+.+.|++++|.+.|++..+. .| +.. .|..+-..|.+.|++++|.+.|++..+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45677889999999999998874 35 446 78888889999999999999999988763
No 210
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.33 E-value=0.86 Score=36.48 Aligned_cols=94 Identities=15% Similarity=0.134 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHHc
Q 025226 121 ETILAVKIFDIIRKQDWYQPD---AYIYKDLIIALAR-----TGKMNEAMQVWESMRKEDLFP--DSQTYTEVIRGFLKD 190 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~ 190 (256)
.+..|...+++..+.. |+ -..|+.+-..|.+ .|+.++|.+.|++..+. .| +..++...-+.+|..
T Consensus 178 ~l~~A~a~lerAleLD---P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~ 252 (301)
T 3u64_A 178 TVHAAVMMLERACDLW---PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIP 252 (301)
T ss_dssp HHHHHHHHHHHHHHHC---TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTT
T ss_pred hHHHHHHHHHHHHHhC---CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHh
Confidence 3467777777776664 55 6789999999999 49999999999999883 46 378888888888884
Q ss_pred -CChhHHHHHHHHHHhCCCC--CChhHHHHHH
Q 025226 191 -GSPADAMNIYEDMIKSPDP--PEELPFRILL 219 (256)
Q Consensus 191 -g~~~~a~~~~~~M~~~g~~--p~~~t~~~li 219 (256)
|+.+++.+.+++-.+.... |+....|.+-
T Consensus 253 ~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 253 LNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999999999988776 7766666554
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.14 E-value=0.59 Score=38.76 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 139 QPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
..+..+|..+-..+...|++++|...+++....+ |+...|..+=..+.-.|++++|.+.|++-... .|...||.-.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 6788899988777778899999999999999965 88777777777788899999999999987766 5677776543
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.10 E-value=0.63 Score=30.59 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=40.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 110 VAVLIELERQEETILAVKIFDIIRKQD-----WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
..|=..+.+.++++.|...|+...+.- .-.+....|..+-.+|.+.|++++|...+++..+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345666667777777777777655431 0134566777777777778888888887777765
No 213
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=92.92 E-value=0.71 Score=30.43 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 199 (256)
..-++|..|-+++...+ . ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-.+ +.|..+++...
T Consensus 21 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 35788888888888776 2 33444444667788899999998888776 4899888877554 67888888888
Q ss_pred HHHHHhCCCCCChhHHH
Q 025226 200 YEDMIKSPDPPEELPFR 216 (256)
Q Consensus 200 ~~~M~~~g~~p~~~t~~ 216 (256)
+.+|...| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 88887775 34445544
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.87 E-value=1.7 Score=30.59 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 025226 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDP 209 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~ 209 (256)
.+..-.+..++.+...|+-|+-.++..++.. +.+|+....-.+-.+|.+.|+..+|.+++.+.-+.|++
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4555667778888888888888888888543 34567777778888888888888888888888777764
No 215
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.51 E-value=0.63 Score=38.90 Aligned_cols=54 Identities=7% Similarity=0.112 Sum_probs=27.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 114 IELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
.++...|+.++|......+.... ..+...|-.+|.+|.+.|+..+|.+.|++..
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444455555555555544443 3444455555555555555555555555443
No 216
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.50 E-value=2.8 Score=36.09 Aligned_cols=121 Identities=11% Similarity=0.059 Sum_probs=77.4
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
|..-+.-..+.++.+.|. .++......+..++.. +.+.... .++.+.|..+|+...+.. .-++..|...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR-~i~~~A~~~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFR-KLFIELGNEGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHH-HHHHHHTTSCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHHhhCCCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHH
Confidence 334444444556677665 4444442222111211 2232222 336889999999887763 33455566777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 025226 153 ARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
.+.|+.+.|..+|+... .....|...+.-=...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88899999999999873 2567788888877778999888888887763
No 217
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.48 E-value=0.61 Score=38.98 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCChhHHHHHH
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKEDLFP-DSQTYTEVIRGFLKDGSPADAMNIYEDMIK-----SPDPPEELPFRILL 219 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~M~~-----~g~~p~~~t~~~li 219 (256)
..++..+...|+.++|...+..+... .| +...|-.+|.+|.+.|+..+|.+.|++..+ .|+.|+..+=...-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45567777889999999999888763 34 778999999999999999999999998754 49999988766554
Q ss_pred HHhcCC
Q 025226 220 KGLLPH 225 (256)
Q Consensus 220 ~~~~~~ 225 (256)
..+...
T Consensus 253 ~il~~~ 258 (388)
T 2ff4_A 253 RILRQQ 258 (388)
T ss_dssp HHHTTC
T ss_pred HHHcCC
Confidence 444443
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.48 E-value=1.1 Score=29.31 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChh
Q 025226 140 PDAYIYKDLIIALARTGKMNEAMQVWESMRKE------DLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~ 213 (256)
.+..-+-.+=..+.+.|+++.|...|++..+. .-.+....+..|-.+|.+.|++++|...+++..+. .|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCH
Confidence 34455556777788899999999999987653 11245678899999999999999999999998764 55543
No 219
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=92.28 E-value=0.66 Score=30.51 Aligned_cols=87 Identities=18% Similarity=0.119 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHH
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNI 199 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 199 (256)
..-++|..|-+++...+ . ...+--+-+..+.+.|++++|..+.+.+. .||...|-+|-.+ +.|..+++...
T Consensus 20 H~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~r 90 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEW--HLGLGAALDRR 90 (115)
T ss_dssp TCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHH--HTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHH
Confidence 35788888888888776 2 33444444667788899999988887766 4899888877554 78888888888
Q ss_pred HHHHHhCCCCCChhHHH
Q 025226 200 YEDMIKSPDPPEELPFR 216 (256)
Q Consensus 200 ~~~M~~~g~~p~~~t~~ 216 (256)
+.+|...| .|....|.
T Consensus 91 L~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 91 LAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTCS-SHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 88888775 34445544
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.07 E-value=1 Score=31.70 Aligned_cols=62 Identities=23% Similarity=0.049 Sum_probs=52.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLF 174 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 174 (256)
-.|+.+...|.-++-.++..++... ..|++...-.+-.+|.+-|+..+|.+++.+..++|++
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3678888899999999999997555 3789999999999999999999999999999998864
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.68 E-value=1.3 Score=31.62 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=46.4
Q ss_pred HHHHHHHHcC---CHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 111 AVLIELERQE---ETILAVKIFDIIRKQDWYQP--DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 111 ~li~~~~~~~---~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
.+=.++++++ +.+++..++++..+.. .| ....+=.+--+|.+.|++++|.+.++...+ +.|+
T Consensus 37 ~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 37 EYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCC
Confidence 3666778887 7779999999998875 34 233333444556999999999999999998 3464
No 222
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=90.99 E-value=2.7 Score=36.24 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYK--DLIIALARTGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~ 188 (256)
.++...+.++++.|..+|+.. +.. ..+...|- +.+.... .++.+.|.++|+...+.- |+ ...|...++-..
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
Confidence 445555678899999999998 433 23444454 3333322 236999999999887742 33 345677788788
Q ss_pred HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 189 KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 189 ~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
+.|+.+.|..+|++.. -+...|...++--...|+.+.+.+
T Consensus 366 ~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~ 405 (493)
T 2uy1_A 366 RIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRE 405 (493)
T ss_dssp HHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999973 256778888876667787766544
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.96 E-value=3.6 Score=30.20 Aligned_cols=76 Identities=14% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.|=......|+++-|++.|..... |..+.-.|.-.|+.++-.++-+.-...| -+|.-...+.-.
T Consensus 39 ~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~l 102 (177)
T 3mkq_B 39 RLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHc
Confidence 455555555555555555554331 3334444444455444443333222221 244445555556
Q ss_pred CChhHHHHHHHH
Q 025226 191 GSPADAMNIYED 202 (256)
Q Consensus 191 g~~~~a~~~~~~ 202 (256)
|+++++.++|.+
T Consensus 103 Gdv~~~i~lL~~ 114 (177)
T 3mkq_B 103 NSTKERSSIFAE 114 (177)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666666644
No 224
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.27 E-value=2 Score=28.33 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
|.=+..+-++.+.... ..|++....+.+.+|-+-+++.-|.++|+..+.+
T Consensus 25 D~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344455555555555 6666666666666666666666666666666543
No 225
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.84 E-value=2.6 Score=27.87 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKG 221 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~ 221 (256)
+.-+..+-++.+-...+.|+.....+.+++|-+.+++.-|.++|+-.+.. +.+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 56778888888888899999999999999999999999999999988754 22335678877763
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=89.75 E-value=2.8 Score=26.96 Aligned_cols=65 Identities=12% Similarity=0.034 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 140 PDAYIYKDLIIALARTGK---MNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 140 p~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
.|+..+..+-.++...++ .++|..+|++..+. .|+ +.....+=..+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444443333 45555555555542 232 233333334445555555555555555544
No 227
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.28 E-value=3.3 Score=28.50 Aligned_cols=83 Identities=10% Similarity=0.076 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC-CH-hhHHHHHHHHHHcCChhH
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE---AMQVWESMRKEDLFP-DS-QTYTEVIRGFLKDGSPAD 195 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p-~~-~t~~~li~~~~~~g~~~~ 195 (256)
.+..+.+-|.+-...| .|+..+--.+-.+++++...++ +..++++..+.+ .| +. ...=.|--|+.+.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~--~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 3444445555444444 2444444444455555554444 555555555432 12 11 111122234445666666
Q ss_pred HHHHHHHHHhC
Q 025226 196 AMNIYEDMIKS 206 (256)
Q Consensus 196 a~~~~~~M~~~ 206 (256)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 66666655544
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.79 E-value=3.3 Score=26.57 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
.++|..++++..+.. .-++.....+=..+...|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 688888888888776 566777777778888889999999999988875
No 229
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=88.40 E-value=9 Score=31.14 Aligned_cols=119 Identities=11% Similarity=0.107 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc---------
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK-MNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD--------- 190 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~--------- 190 (256)
++++++.+++.+.+.. .-|-..|+----.+...|. ++++.+.++++.+... -|...|+..-..+.+.
T Consensus 125 ~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 125 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC-----
T ss_pred cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccc
Confidence 5899999999999987 7799999998888888888 6999999999998543 3777888766666554
Q ss_pred -----CChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCC-----------CChHHHHH--hhhhhcCCCc
Q 025226 191 -----GSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPH-----------PLLRSKVK--KDFEELFPEK 243 (256)
Q Consensus 191 -----g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~-----------g~~~~a~~--~~~~~~~p~~ 243 (256)
+.++++++.+.+..... +-|...|+-+--.+.+. +.++++++ ...-.+.||.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 44778888888777542 23666666443333333 34566666 4445667764
No 230
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=87.40 E-value=10 Score=33.26 Aligned_cols=97 Identities=7% Similarity=0.031 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-ChhHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG--KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG-SPADAMN 198 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~ 198 (256)
++++++.++.+.+.. .-+..+|+.---.+.+.| +++++.+.++++.+... -|...|+.---.+.+.| ..+++.+
T Consensus 89 ~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHH
Confidence 899999999999886 678889999888888888 77999999999988542 36788888777777888 7889999
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHh
Q 025226 199 IYEDMIKSPDPPEELPFRILLKGL 222 (256)
Q Consensus 199 ~~~~M~~~g~~p~~~t~~~li~~~ 222 (256)
.++++.+... -|...|+..-..+
T Consensus 166 ~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 166 FTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp HHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHCC-CCccHHHHHHHHH
Confidence 9998877643 2555666544443
No 231
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=87.39 E-value=14 Score=32.33 Aligned_cols=64 Identities=6% Similarity=0.031 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 121 ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
+++++++.++.+.+.. .-|-.+|+.---.+.+.| ..+++.+.++++.+... -|...|+..-..+
T Consensus 124 ~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 124 NWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 3455555555555544 344555555444444444 45555555555444321 1344444443333
No 232
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.62 E-value=5.5 Score=27.83 Aligned_cols=71 Identities=17% Similarity=0.264 Sum_probs=44.4
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 025226 113 LIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185 (256)
Q Consensus 113 i~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 185 (256)
..-|.+.. |.=+..+-++.+.... ..|++....+.+.+|-+-+++.-|.++|+-.+.+ +.+...+|..++.
T Consensus 59 ~~~F~~~~iD~wElrrglN~l~~~D-lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 59 VTYFNKPDIDAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 33344444 5556666666666666 6777777777777777777777777777776653 1223444555544
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=85.09 E-value=8.6 Score=34.73 Aligned_cols=103 Identities=9% Similarity=0.025 Sum_probs=64.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
.+=..+.+.++++.|++.|..+.. |..+...|...|+.+...++-+.....| -++.-...|.+.
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~ 749 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIA 749 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHc
Confidence 577788889999999999998762 4455666666777776666655555433 235555556667
Q ss_pred CChhHHHHHHHHHHh--------CCCCCCh----hHHHHHHHHhcCCCChH
Q 025226 191 GSPADAMNIYEDMIK--------SPDPPEE----LPFRILLKGLLPHPLLR 229 (256)
Q Consensus 191 g~~~~a~~~~~~M~~--------~g~~p~~----~t~~~li~~~~~~g~~~ 229 (256)
|++++|.+++.++.+ ....|.. ......-..+...|+.+
T Consensus 750 g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 750 GDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred CCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchh
Confidence 777777777766543 1234455 34444445555666643
No 234
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.14 E-value=8.7 Score=26.86 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 160 EAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
+..+-++.+....+.|+.....+.+++|-+.+++.-|.++|+-.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555555554444
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=83.86 E-value=9.7 Score=30.42 Aligned_cols=95 Identities=9% Similarity=0.010 Sum_probs=67.6
Q ss_pred CCHHHHHHHHH-HHHhc--C------CHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHc-----CChhHHHHHHHH
Q 025226 140 PDAYIYKDLII-ALART--G------KMNEAMQVWESMRKEDLFPD---SQTYTEVIRGFLKD-----GSPADAMNIYED 202 (256)
Q Consensus 140 p~~~~y~~li~-~~~~~--g------~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~-----g~~~~a~~~~~~ 202 (256)
+....|...+. ++... | ...+|..++++..+ +.|+ -..|+.|-..|.+. |+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 44455665554 44443 2 25666666776666 4577 56899999999994 999999999999
Q ss_pred HHhCCCCCChhHHHHHHHHhcCC-CChHHHHHhhh
Q 025226 203 MIKSPDPPEELPFRILLKGLLPH-PLLRSKVKKDF 236 (256)
Q Consensus 203 M~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~ 236 (256)
-.+.+-.-+..++...-+.++.. |+.+++.+...
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~ 264 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALD 264 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 98764322467788888999985 88888777333
No 236
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=83.67 E-value=3.4 Score=32.53 Aligned_cols=116 Identities=10% Similarity=-0.032 Sum_probs=62.1
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhcCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDW-YQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~y~~li~~~~~~g~ 157 (256)
+..+.+.|.+.+++..+....+...-..+.. .++.-+|-.|+++.|.+-++...+... ..|...+|-.+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 3455677777777766665555544433444 477777888888887777776665530 12222334333332
Q ss_pred HHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHH--cCChhHHHHHHHHHHh
Q 025226 158 MNEAMQVWESMRKEDLFPD-----SQTYTEVIRGFLK--DGSPADAMNIYEDMIK 205 (256)
Q Consensus 158 ~~~a~~~~~~m~~~g~~p~-----~~t~~~li~~~~~--~g~~~~a~~~~~~M~~ 205 (256)
+..=++.-..+-.|. ..-...|+.+... .|+.++|.++-....+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 222222222222222 2234455555553 4777777777766643
No 237
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=83.57 E-value=17 Score=29.76 Aligned_cols=85 Identities=7% Similarity=0.085 Sum_probs=57.7
Q ss_pred cC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChh-
Q 025226 119 QE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALART-G-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPA- 194 (256)
Q Consensus 119 ~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~-g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~- 194 (256)
.| +++++++.++.+.+.. .-+..+|+.--..+.+. + +++++.++++++.+.. .-|...|+.---.+.+.|..+
T Consensus 101 l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 101 LNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp TTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 45 5888888888888775 56777788777777766 6 7788888888877642 125666665544444445454
Q ss_pred -------HHHHHHHHHHhC
Q 025226 195 -------DAMNIYEDMIKS 206 (256)
Q Consensus 195 -------~a~~~~~~M~~~ 206 (256)
+++++++++.+.
T Consensus 178 ~~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHh
Confidence 677777777665
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=81.23 E-value=10 Score=26.02 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHHH---HHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 111 AVLIELERQEETIL---AVKIFDIIRKQDWYQP--DAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 111 ~li~~~~~~~~~~~---a~~~~~~m~~~~~~~p--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
.+-.++.++.+... ++.++.++.+.+ .| .....=.|--++.+.|++++|.+.++.+.+. .|+
T Consensus 40 ~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 40 EYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCC
Confidence 36667777776555 999999988775 34 2223334456788999999999999999883 464
No 239
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=78.93 E-value=13 Score=25.48 Aligned_cols=64 Identities=14% Similarity=0.210 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK--MNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~ 176 (256)
.+|.-|...|+.++|.+.++++..-. ....+++..+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~--f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 58888888899999999998886322 2345566666777776542 4677788888887654433
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.47 E-value=23 Score=32.34 Aligned_cols=119 Identities=12% Similarity=0.101 Sum_probs=73.0
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCC-CH---
Q 025226 111 AVLIELERQEE-TILAVKIFDIIRKQDWYQPDAYIY-KDLIIALARTG-KMNEAMQVWESMRKE------DLFP-DS--- 177 (256)
Q Consensus 111 ~li~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~y-~~li~~~~~~g-~~~~a~~~~~~m~~~------g~~p-~~--- 177 (256)
+++.-+...+. .+.|..+|+++.+.. ......| ..+|..+.+.+ +--+|.++..+..+. ...+ +.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 36666666766 588999999998875 2223333 33444433332 222344444433320 1111 11
Q ss_pred -------hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-hhHHHHHHHHhcCCCChHHHHH
Q 025226 178 -------QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE-ELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 178 -------~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~ 233 (256)
...+.=.+-|...|+++-|+++-++-... .|+ -.||-.|..+|.+.|+++.|+-
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHH
Confidence 11222234456689999999998886654 555 6799999999999999999987
No 241
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=75.30 E-value=9.9 Score=26.61 Aligned_cols=61 Identities=11% Similarity=0.012 Sum_probs=39.1
Q ss_pred HHHHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 96 FIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 96 ~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
+.+.+++.|++++.. .++..+...+..-.|.++++.+++.+ ...+..|----|..+...|-
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKF-PNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGC-TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCChhhHHHHHHHHHHCCC
Confidence 334566777777665 57777777766667888888888776 45555554444455555543
No 242
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=75.12 E-value=11 Score=26.68 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=42.0
Q ss_pred HHHHHHHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 93 LQKFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
++.+.+.++..|++++.. .++..+...+..-.|.++++.+++.+ ...+..|-=--|..+...|-
T Consensus 11 ~~~~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 11 LERLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKD-KNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHS-TTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCc
Confidence 334445567788877665 68888888777778889999998876 45565554444555555554
No 243
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=74.01 E-value=12 Score=26.68 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG--KMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~ 176 (256)
.+|.-|...|+.++|.+.++++..-. ....+++..+..++-+.+ ..+.+..++..+...|+-+.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~--f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 58888999999999999999886322 234566667777777643 25667788888887654443
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.16 E-value=9.2 Score=30.08 Aligned_cols=113 Identities=12% Similarity=0.051 Sum_probs=75.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHc
Q 025226 113 LIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 113 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~ 190 (256)
+....+.|++++|++-...-.+.. .-|...=..++..+|-.|+++.|.+-++...+. ...|...+|-.+|++=...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH
Confidence 345668899999999999888886 778888999999999999999999999887763 3445556787887775432
Q ss_pred CChhHHHHHHHHHHhCCC-CCChhHHHHHHHHhcCC--CChHHHHH
Q 025226 191 GSPADAMNIYEDMIKSPD-PPEELPFRILLKGLLPH--PLLRSKVK 233 (256)
Q Consensus 191 g~~~~a~~~~~~M~~~g~-~p~~~t~~~li~~~~~~--g~~~~a~~ 233 (256)
. ++|.-=..-++ .....-...+++++... |+.++|.+
T Consensus 82 ~------~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~ 121 (273)
T 1zbp_A 82 K------DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSE 121 (273)
T ss_dssp H------HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred H------HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 2 11211001111 11222344666666543 77776655
No 245
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.90 E-value=17 Score=24.94 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCChhH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS--PADAMNIYEDMIKSPDPPEELP 214 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~M~~~g~~p~~~t 214 (256)
..+.+|.-|...|+.++|.+.++++....+. ..+.+..+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4577899999999999999999998742111 23445556666655542 4568888888888876554443
No 246
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=72.69 E-value=9.9 Score=27.27 Aligned_cols=69 Identities=14% Similarity=0.087 Sum_probs=49.7
Q ss_pred cHHHHHHHHHHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhcCCH
Q 025226 89 DEEKLQKFIKTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQ--DWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 89 ~~~a~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
.+.+++.+.+.+++.|++++.. .+++.+...+..-.|.++++.+.+. + ...+..|-=--|..+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~-~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPD-LNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGG-GCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHCCCE
Confidence 3555666767778888888766 6888888888888899999999887 6 455655544445666666643
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=69.04 E-value=16 Score=26.15 Aligned_cols=63 Identities=11% Similarity=0.077 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 156 GKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 156 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
+++++|.++|+.+.+.+-.- ...|-.--.-=.+.|++..|..++.+-...+.+|. ....+.|+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 56666666666665431111 33343333344456677777777766666555544 33333333
No 248
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=66.02 E-value=25 Score=26.03 Aligned_cols=84 Identities=7% Similarity=-0.098 Sum_probs=41.8
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHH
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDWYQPDAYI--YKDLIIAL 152 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--y~~li~~~ 152 (256)
+...++.|+.+-. +.+++.....+..++.. +.|...+..|+.+-+ +.+.+.| ..++... -.+.+...
T Consensus 13 L~~A~~~g~~~~v-~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g-~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAV-HRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAG-ASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHTTCHHHH-HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred HHHHHHcCCHHHH-HHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcC-CCccccCCCCCCHHHHH
Confidence 4444566665543 34555444455444332 466666667776544 3344444 3433211 12334444
Q ss_pred HhcCCHHHHHHHHHHHH
Q 025226 153 ARTGKMNEAMQVWESMR 169 (256)
Q Consensus 153 ~~~g~~~~a~~~~~~m~ 169 (256)
+..|+.+-...+++.-.
T Consensus 87 ~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAA 103 (241)
T ss_dssp HHTTCHHHHHHHHHHSC
T ss_pred HHcCCHHHHHHHHHcCC
Confidence 56666666666655543
No 249
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=65.86 E-value=15 Score=22.58 Aligned_cols=63 Identities=10% Similarity=0.126 Sum_probs=43.8
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 166 ESMRKEDLFPDSQTYTEVIRGFLKDG-SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+.|++.|+..+..- -.++..+...+ ..-.+.++++.+.+.+...+..|..-.|+.+.+.|.+.
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 34666777776554 44556665554 56678888888888776678888888888887777543
No 250
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=65.49 E-value=53 Score=26.56 Aligned_cols=132 Identities=9% Similarity=0.084 Sum_probs=92.6
Q ss_pred HHHhhcCCCcH-HHHHHHHHHHhhccCCCcHH-------HHHHHHHHcC-------CHHHHHHHHHHHHhcCCCCCCHHH
Q 025226 80 ILGLKRFKDDE-EKLQKFIKTHVLRLLKMDIV-------AVLIELERQE-------ETILAVKIFDIIRKQDWYQPDAYI 144 (256)
Q Consensus 80 i~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~-------~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~p~~~~ 144 (256)
+....+.|... +|+ .+.+.+.. ..|+.. .+|....+.. .+++++.+++.+.+.. +-+..+
T Consensus 36 ~~~~~~~~e~s~eaL-~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~a 110 (331)
T 3dss_A 36 VFQKRQAGELDESVL-ELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGT 110 (331)
T ss_dssp HHHHHHTTCCSHHHH-HHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHHHHcCCCCHHHH-HHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHH
Confidence 33444555555 455 44455543 335544 2555554421 2789999999999886 679999
Q ss_pred HHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCChhHHHHH
Q 025226 145 YKDLIIALARTG--KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS-PADAMNIYEDMIKSPDPPEELPFRIL 218 (256)
Q Consensus 145 y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~M~~~g~~p~~~t~~~l 218 (256)
|+.---.+.+.| .++++.++++++.+... -|...|+.---.+.+.|. ++++++.+.++.+..+ -|...|+..
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R 185 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 999888888888 48999999999998532 377888877777778888 5899999999987643 244555533
No 251
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=63.08 E-value=18 Score=25.61 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCChhH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS--PADAMNIYEDMIKSPDPPEELP 214 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~M~~~g~~p~~~t 214 (256)
..+.+|.-|...|+.++|.+.++++....+. ..+.+..+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4578899999999999999999998742111 23445556666655433 4567888888887776544443
No 252
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=62.41 E-value=20 Score=24.98 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=37.8
Q ss_pred HHHhhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 98 KTHVLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 98 ~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
+.+++.|++++.. .+++.+...+ .-.|.++++.+.+.+ ...+..|-=--|..+...|-
T Consensus 8 ~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTA-SGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTC-TTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhC-CCCCHhHHHHHHHHHHHCCc
Confidence 4566778777665 5777777766 567888888888776 45555544444455555543
No 253
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=60.02 E-value=47 Score=24.18 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=23.2
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
....|+++.|.++.+++. +...|..|=......|+++-|++.|.+..
T Consensus 15 AL~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 334455555555544331 34455555555555555555555555543
No 254
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=59.43 E-value=22 Score=24.46 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=36.6
Q ss_pred HHhhccCCCcHH--HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 99 THVLRLLKMDIV--AVLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 99 ~~~~~~~~~~~~--~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
.+++.|++++.. .++..+...+ ..-.|.++++.+++.+ ...+..|----|..+...|-
T Consensus 8 ~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAG-EDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhC-CCCCHHHHHHHHHHHHHCCc
Confidence 355677766655 5777777665 5667888888888776 45555554444555555543
No 255
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=59.11 E-value=42 Score=23.28 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=42.6
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+.|++.|+.++..= -.++..+...+..-.|.++++.+.+.+...+..|.---|+.+.+.|.+.
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 34566777666543 2344555556666778888888887776777777777788888777543
No 256
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.20 E-value=39 Score=23.93 Aligned_cols=51 Identities=14% Similarity=0.165 Sum_probs=22.9
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 025226 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175 (256)
Q Consensus 125 a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (256)
+..+|..|.+.|--.--+.-|...-..+-..|++.+|.++|+.=.+.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555554444112233344444444444555555555555444443333
No 257
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=56.62 E-value=33 Score=24.04 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=41.8
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 166 ESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+.+++.|+.++..= -.++..+...+..-.|.++++.+.+.+...+..|.---|+.+.+.|.+.
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34556676655433 3455555666667788888888887776777778777788888877654
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=56.49 E-value=1.4e+02 Score=28.58 Aligned_cols=120 Identities=12% Similarity=0.030 Sum_probs=83.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc----C-----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 112 VLIELERQEETILAVKIFDIIRKQ----D-----------------WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~----~-----------------~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
+=.++...|++++|.+.|.+.-.. . ....-+.=|.-++..|-+.+.++.+.++-....+
T Consensus 848 ~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~ 927 (1139)
T 4fhn_B 848 KALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADA 927 (1139)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334566789999999999763210 0 0011223467788888899999998887775554
Q ss_pred C-CCC-CCH--hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 171 E-DLF-PDS--QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 171 ~-g~~-p~~--~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
. +-. ++. ..|+.++.++...|++++|...+-.+.....+ ......+|..+|+.|.+++-+.
T Consensus 928 ~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 928 SKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred hccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhC
Confidence 2 211 221 26899999999999999999999988876543 4566778888888877665444
No 259
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=55.02 E-value=32 Score=20.93 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=25.0
Q ss_pred HhhccCCCcHH--HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 100 HVLRLLKMDIV--AVLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 100 ~~~~~~~~~~~--~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
+...|++++.. .++..+...+ ..-.+.++++.+.+.+ ...+..|---.|..+...|
T Consensus 8 l~~~g~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~-~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 8 LKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMG-EEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHHT
T ss_pred HHHcCCCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCC
Confidence 33445444433 3555554443 3334455555555554 3334444444444444433
No 260
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=54.97 E-value=25 Score=24.64 Aligned_cols=60 Identities=13% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHhhccCCCcHH--HHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH
Q 025226 98 KTHVLRLLKMDIV--AVLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKM 158 (256)
Q Consensus 98 ~~~~~~~~~~~~~--~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~ 158 (256)
..++..|++++.. .++..+...+ ..-.|.++++.+.+.+ ...+..|----|..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~-~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLG-EEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCcE
Confidence 3456677777665 5777777665 5667888888888876 455665555555666666544
No 261
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.65 E-value=69 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=13.3
Q ss_pred CCHhhHHHHHHHHHHcCChhHHHHHH
Q 025226 175 PDSQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 175 p~~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
++...-...+..+.+.|+.++|.++|
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lf 114 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLF 114 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHH
Confidence 33444444555555555555555555
No 262
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.18 E-value=52 Score=26.99 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHhh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG--KMNEAMQVWESMRKEDLFPDSQT 179 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t 179 (256)
.+|.-|...|+.++|.+.++++..-. + ...+++..+..++-+.+ ..+...+++..+...|+-+....
T Consensus 222 ~lL~EY~~s~D~~EA~~ci~EL~~p~-f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 222 MLLKEYLLSGDISEAEHCLKELEVPH-F-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCTT-C-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHccCCc-c-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 48999999999999999999987332 2 23556677777777654 35668899999998655444333
No 263
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=53.64 E-value=90 Score=25.43 Aligned_cols=81 Identities=9% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc-C-ChhHHHHH
Q 025226 123 ILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD-G-SPADAMNI 199 (256)
Q Consensus 123 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-~~~~a~~~ 199 (256)
++|+++++.+.... .-+..+||.-=..+...| .++++.++++.+....- -+...|+.---.+.+. + ++++++++
T Consensus 71 e~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 45555555555554 334455555555555555 35666666665554321 1344455444444443 4 55556666
Q ss_pred HHHHHhC
Q 025226 200 YEDMIKS 206 (256)
Q Consensus 200 ~~~M~~~ 206 (256)
++++.+.
T Consensus 148 ~~k~L~~ 154 (349)
T 3q7a_A 148 IHGSLLP 154 (349)
T ss_dssp HHHHTSS
T ss_pred HHHHHHh
Confidence 6555543
No 264
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=53.34 E-value=18 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHh-CCCCCChhHHHHHHHHhcCCCC
Q 025226 193 PADAMNIYEDMIK-SPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 193 ~~~a~~~~~~M~~-~g~~p~~~t~~~li~~~~~~g~ 227 (256)
.++|...|.+|+. .||.|+ .||...+...+...+
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCc
Confidence 3556666666653 355554 566666655555443
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.23 E-value=68 Score=23.92 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
+...++..+|..|...|--.--..-|...-..+-..|++.+|.++|+.=.+.+-.|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 336688888888887762234556677777777888888888888888777766663
No 266
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.56 E-value=36 Score=27.92 Aligned_cols=78 Identities=12% Similarity=0.092 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCChhHHHHHHH
Q 025226 143 YIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS--PADAMNIYEDMIKSPDPPEELPFRILLK 220 (256)
Q Consensus 143 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~M~~~g~~p~~~t~~~li~ 220 (256)
...+.+|.-|...|+.++|.+.++++..-.+.+ .+....+..++-+.++ .+....++..+...|+-+.......+.+
T Consensus 218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 346889999999999999999999997532222 3445566666655443 4568888888888877555554444444
Q ss_pred H
Q 025226 221 G 221 (256)
Q Consensus 221 ~ 221 (256)
.
T Consensus 297 v 297 (358)
T 3eiq_C 297 I 297 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 267
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=51.91 E-value=35 Score=23.73 Aligned_cols=60 Identities=15% Similarity=0.030 Sum_probs=36.8
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 167 SMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 167 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
.+++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.---|+.+.+.|.+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4445666665543 23344444445 567777777777776666777776667777766654
No 268
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=51.75 E-value=38 Score=23.19 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=29.1
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 168 MRKEDLFPDSQTYTEVIRGFLKDG-SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 168 m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
|++.|++++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+.+.|.
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3445554443322 2333333333 455566666666655555555555555555555554
No 269
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=51.70 E-value=40 Score=24.32 Aligned_cols=60 Identities=5% Similarity=-0.025 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDA-------YIYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
.-+..+...+.++.|+-+.+-+.......|++ .++..+-+++...|++..|...|++..+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45666677777777777776644321123332 2445556667777777777777776543
No 270
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=51.50 E-value=42 Score=30.65 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=42.6
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 025226 116 LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR 169 (256)
Q Consensus 116 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~ 169 (256)
|.+.|+++.|+++-++....- .-+-.+|-.|...|...|+++.|.-.++.++
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 445788999999988887663 4557889999999999999999998888885
No 271
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=51.06 E-value=42 Score=23.95 Aligned_cols=67 Identities=12% Similarity=0.110 Sum_probs=51.0
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 118 RQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 118 ~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
..+|.++|.++|+.+.+.+ -+. ...|-..-..=.+.|++++|.+++..-...+-. +.....+.|+-+
T Consensus 72 ei~D~d~aR~vy~~a~~~h-KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~nl 138 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANC-KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALRNL 138 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHC-TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh-HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHHhh
Confidence 3489999999999998765 343 888888888888999999999999998876544 344455555543
No 272
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=50.89 E-value=25 Score=22.39 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcHHHHHHHHHHc--CC-HHHHHHHHHHHHhcCCCC
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDIVAVLIELERQ--EE-TILAVKIFDIIRKQDWYQ 139 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~--~~-~~~a~~~~~~m~~~~~~~ 139 (256)
...|.+..-....+..+........+.++...+|.++++. |+ .++|+.+-++..+.|++.
T Consensus 9 ye~~Rrs~f~k~~vKrl~~~~~~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~ 71 (89)
T 1bh9_B 9 YEMYRRSAFPKAAIKRLIQSITGTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQ 71 (89)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred HHHHHHhcCCHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 4566677777777777777776555555566678888774 54 477777777665555333
No 273
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=50.65 E-value=53 Score=21.92 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-h-CCCCCCHhhHHHHHHHHHHcCChhHHH-H
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR-K-EDLFPDSQTYTEVIRGFLKDGSPADAM-N 198 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~-~-~g~~p~~~t~~~li~~~~~~g~~~~a~-~ 198 (256)
+++|+.-+++..... .++......+|..+-.+ ++.|.++..... + .|+. ..++...++...+.|-+++.. +
T Consensus 2 ~~~al~~L~e~~~~~--~~~~~~~dg~iq~fe~t--~Elawk~~k~~l~~~~g~~--~~s~rd~~r~a~~~glI~~~~~~ 75 (119)
T 1wwp_A 2 AEKALATLKELAFLE--DPSPVERDAAIQRFEYT--FEAFWKALQAYLREKEGLE--GASPKGVIRLAREVGLLRDEEAR 75 (119)
T ss_dssp HHHHHHHHHHHHTCS--SCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCC--CCSHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHHHHhcC--cchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCchHHH
Confidence 345555555554332 35666666666666655 566666666555 3 3554 667777777777777776552 3
Q ss_pred HHHHHH
Q 025226 199 IYEDMI 204 (256)
Q Consensus 199 ~~~~M~ 204 (256)
.+..|.
T Consensus 76 ~w~~m~ 81 (119)
T 1wwp_A 76 LALGMV 81 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 274
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.79 E-value=32 Score=23.20 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHHH---HHHHHHHcCCHHHHHHHHHHHHhc
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIVA---VLIELERQEETILAVKIFDIIRKQ 135 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~ 135 (256)
.+.++.++.+++.+....+.|++.. -|......+++..|.+++-.+...
T Consensus 39 ~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 39 DDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 3445566777888888788777663 344455678899999999887754
No 275
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=49.33 E-value=10 Score=22.15 Aligned_cols=32 Identities=19% Similarity=0.301 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhC-CCCCChhHHHHHHHHh-cCCC
Q 025226 194 ADAMNIYEDMIKS-PDPPEELPFRILLKGL-LPHP 226 (256)
Q Consensus 194 ~~a~~~~~~M~~~-g~~p~~~t~~~li~~~-~~~g 226 (256)
++|.+.|.+|++. ++.|+ -||.-.++.+ ++..
T Consensus 3 eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDST-WSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCCC
Confidence 4566666666543 33333 5666666666 4443
No 276
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=49.33 E-value=18 Score=26.01 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRK 170 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~ 170 (256)
....+|.-|...|+.++|...++++..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~ 38 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL 38 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 356788889899999999999999875
No 277
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=49.04 E-value=10 Score=22.09 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCC
Q 025226 120 EETILAVKIFDIIRKQDWYQPD 141 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~ 141 (256)
=|++.|...|.+++..|.+.|+
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~e 55 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEV 55 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHH
Confidence 4799999999999888755554
No 278
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=48.77 E-value=44 Score=23.39 Aligned_cols=63 Identities=8% Similarity=0.116 Sum_probs=41.0
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 166 ESMRKEDLFPDSQTYTEVIRGFLKDG-SPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 166 ~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+.|++.|+.++..=. .++..+...+ ..-.|.++++.+.+.+...+..|.---|+.+.+.|.+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 345566776665432 3344444444 56678888888887776777777777777777777543
No 279
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=48.61 E-value=51 Score=21.13 Aligned_cols=40 Identities=15% Similarity=0.023 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 025226 120 EETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQV 164 (256)
Q Consensus 120 ~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~ 164 (256)
...++|.++++.+.++| | ..|..++.++...|..+-|..+
T Consensus 51 t~~~~ar~Lld~L~~rG---~--~Af~~F~~aL~et~~~~La~lL 90 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG---S--QALPLFISCLEDTGQDMLASFL 90 (97)
T ss_dssp CHHHHHHHHHHHHTTSC---T--THHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHcC---h--HHHHHHHHHHHHcCcHHHHHHH
Confidence 46788888888888776 2 4788888888777776666544
No 280
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=48.59 E-value=37 Score=23.04 Aligned_cols=48 Identities=6% Similarity=-0.005 Sum_probs=32.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCChH
Q 025226 182 EVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 182 ~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
.++..+...+..-.|.++++.+.+.+...+..|.--.|+.+.+.|.+.
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 345555555666677778877777766667777777777777777543
No 281
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=48.13 E-value=54 Score=21.29 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=12.9
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcC
Q 025226 163 QVWESMRKEDLFPDSQTYTEVIRGFLKDG 191 (256)
Q Consensus 163 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g 191 (256)
++-++...-|+.|+..+..-++.-|...+
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444444444
No 282
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=47.48 E-value=53 Score=22.96 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh-CCCCC---CHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRK-EDLFP---DSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
..+|..+-.+ ++.|.++.+...+ .|+.| +..++.-+++...+.|-+++. +.+..|.
T Consensus 44 dg~iq~fe~t--~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~-~~w~~m~ 103 (146)
T 1jog_A 44 AGAIQKFEFV--YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM-SKWVAYR 103 (146)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH-HHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH-HHHHHHH
Confidence 3344443333 4444444444443 34443 356666666666666666555 4444444
No 283
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=47.45 E-value=81 Score=26.22 Aligned_cols=91 Identities=5% Similarity=-0.069 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQ-----PDAYIYKDLIIALARTGKMNEAMQVWESMRKE--DLFPDSQTYTEV 183 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~l 183 (256)
.+...|...|++.+|.++++++.+.- -. .-...|-.-+..|...+++.++...+.+.... .+.|+..+- ..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~-~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~-a~ 181 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLREL-KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ-GA 181 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-HH
Confidence 38899999999999999999888752 12 22345666677888999999999999887653 232333222 33
Q ss_pred HHHH-----H-HcCChhHHHHHHHHH
Q 025226 184 IRGF-----L-KDGSPADAMNIYEDM 203 (256)
Q Consensus 184 i~~~-----~-~~g~~~~a~~~~~~M 203 (256)
|+.| . ..+++.+|...|-+-
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 3332 2 578888888777654
No 284
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=46.55 E-value=51 Score=23.43 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=44.9
Q ss_pred HHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCChhHHHHHHHHhcCCCChH
Q 025226 159 NEAMQVWESM-RKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS--PDPPEELPFRILLKGLLPHPLLR 229 (256)
Q Consensus 159 ~~a~~~~~~m-~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~--g~~p~~~t~~~li~~~~~~g~~~ 229 (256)
+.+.+-+.+. ++.|++++..= ..++..+...+..-.|.++++.+.+. +...+..|.---|+.+.+.|.+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 4444444433 34577765433 44556666666777788888888776 66667777777777777777543
No 285
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=46.55 E-value=70 Score=22.11 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=41.9
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 112 VLIELERQE---ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 112 li~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
+--++.++. +..+++.+++++.+.+ ..-.....=-|--++.+.|++++|.+..+.+.+. .|+
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 455566655 4567888888888765 2223444555666788888888888888888873 454
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.09 E-value=57 Score=26.08 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK--MNEAMQVWESMRKEDLFPDS 177 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~ 177 (256)
.+|.-|...|+.++|.+.++++..-. ....+++..+..++-+.++ .+...+++..+.+.|+-+..
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~--f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPH--FHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGG--GHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCc--chHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 48999999999999999999987332 2234666677777776543 56677999999876554443
No 287
>3hgl_A Effector protein hopab2; five helices, hypersensitive response elicitation, ligase, secreted, UBL conjugation, UBL conjugation pathway; 1.90A {Pseudomonas syringae PV} PDB: 3hgk_E
Probab=44.77 E-value=53 Score=20.26 Aligned_cols=69 Identities=9% Similarity=-0.049 Sum_probs=41.7
Q ss_pred cCCCcHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 025226 104 LLKMDIVAVLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTE 182 (256)
Q Consensus 104 ~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 182 (256)
|..|+...++.-+...| |+.....++..+.....+..+..+.++|+.-| =.|...|+..+...-+.
T Consensus 4 gav~~an~IVqQLv~AGADLA~vrtmlrnvm~g~~valsr~e~~il~qHF-------------Pnm~~~Gi~~~S~LA~~ 70 (85)
T 3hgl_A 4 GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHF-------------PNMPMHGISRDSELAIE 70 (85)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHC-------------TTHHHHCCCTTCHHHHH
T ss_pred cccccHHHHHHHHHHcCCCHHHHHHHHHHHHcCchHhhhHHHHHHHHHHC-------------hhhhhccCCCCCHHHHH
Confidence 44455556666666665 67777777777665544667777777776543 34555555555544444
Q ss_pred HHH
Q 025226 183 VIR 185 (256)
Q Consensus 183 li~ 185 (256)
|=.
T Consensus 71 lR~ 73 (85)
T 3hgl_A 71 LRG 73 (85)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 288
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=44.73 E-value=84 Score=22.52 Aligned_cols=53 Identities=9% Similarity=0.087 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 124 LAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 124 ~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
....+|..|.+.|--.--..-|...-..+-..|++.+|.++|+.=.+.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 35566666666652233345555556666666777777777766666555554
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=42.40 E-value=88 Score=22.11 Aligned_cols=71 Identities=14% Similarity=0.139 Sum_probs=48.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
++-|+.--..-|.---.+ +++.++|..|..+|+--.. .-|-.--..+-..|++.+|.++|+.=.+.+-+|-
T Consensus 64 YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344555444444433333 3488899999988766543 5566666667778999999999998888877774
No 290
>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31
Probab=42.18 E-value=44 Score=22.52 Aligned_cols=48 Identities=4% Similarity=0.074 Sum_probs=37.6
Q ss_pred HHHHHHHHHhC--CCC-----------CCHhhHHHHHHHHHHcCC---hhHHHHHHHHHHhCCC
Q 025226 161 AMQVWESMRKE--DLF-----------PDSQTYTEVIRGFLKDGS---PADAMNIYEDMIKSPD 208 (256)
Q Consensus 161 a~~~~~~m~~~--g~~-----------p~~~t~~~li~~~~~~g~---~~~a~~~~~~M~~~g~ 208 (256)
..+++++|... |++ |+..|=+-+++.+.+.+. -++|..+-+.|.+.|+
T Consensus 8 l~~L~~~m~~~~~Gv~i~~rr~~~k~y~~cF~GsdlVdWL~~~~~~~sR~eAv~lgq~Ll~~G~ 71 (120)
T 1v3f_A 8 LHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISSNFAASRLEAVTLASMLMEENF 71 (120)
T ss_dssp HHHHHHHHTCSSSSCCCCCCCSSSSCCSSCEEHHHHHHHHHHTTSCSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCccCCCeeeeeEEccEEccceeehHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 56677787652 554 788888999999998774 4789999999998875
No 291
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.15 E-value=83 Score=23.82 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCHH--H-----HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 025226 122 TILAVKIFDIIRKQDWYQPDAY--I-----YKDLIIALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~--~-----y~~li~~~~~~g~~~~a~~~~~~m~~~ 171 (256)
++.|+.+|+.+.+.- ..|+.. . =-..+..|.+.|.+++|.++|++.-..
T Consensus 88 LESAl~v~~~I~~e~-~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEF-TLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 589999999999885 222322 1 124456678899999999999987764
No 292
>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A
Probab=42.04 E-value=30 Score=22.98 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=38.4
Q ss_pred HHHHHHHHHh--CCCC-----------CCHhhHHHHHHHHHHcCCh---hHHHHHHHHHHhCCC
Q 025226 161 AMQVWESMRK--EDLF-----------PDSQTYTEVIRGFLKDGSP---ADAMNIYEDMIKSPD 208 (256)
Q Consensus 161 a~~~~~~m~~--~g~~-----------p~~~t~~~li~~~~~~g~~---~~a~~~~~~M~~~g~ 208 (256)
..++.++|+. .|++ |+.++=+-|++.+.+++.. ++|..+-+.+.+.|+
T Consensus 8 l~~Lv~~Mqd~~~Gv~~~~r~~~~~~~~~cF~GselVdWLi~~~~~~~R~EAv~lgq~Ll~~G~ 71 (109)
T 1uhw_A 8 LGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVSNKLVRNRQEGLMISASLLSEGY 71 (109)
T ss_dssp HHHHHHHHHCTTTSCCCEEEESSSCEEEEECCHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCCCceeeeeEECCEEccccccchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCe
Confidence 4577888874 4664 7778889999999998844 789999999998885
No 293
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.84 E-value=1.5e+02 Score=24.66 Aligned_cols=93 Identities=9% Similarity=-0.111 Sum_probs=65.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHh----hHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQD-WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKE---DLFPDSQ----TYTE 182 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~----t~~~ 182 (256)
.+-.-|.+.|++++|.+.|.++...- ....-...|-..|..+...+++..+....++.... +-.|+.. .|..
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 58888999999999999999988652 02334567777888888999999999999887642 3333322 1222
Q ss_pred HHHHHHHcCChhHHHHHHHHHHh
Q 025226 183 VIRGFLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~M~~ 205 (256)
++ +...+++.+|...|-+...
T Consensus 216 l~--~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IH--CLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HG--GGGTSCHHHHHHHHHHHHH
T ss_pred HH--HHHhChHHHHHHHHHHHhc
Confidence 22 2346788888888877654
No 294
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=41.17 E-value=75 Score=20.91 Aligned_cols=85 Identities=12% Similarity=-0.095 Sum_probs=57.3
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIE--LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 163 (256)
....++|. .+-+.....+. ...+++|+. +.+.|++++|+.+.+.+ +.||...|-+|-. .+.|..++++.
T Consensus 19 ~H~HqEA~-tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 19 QHCHEEAL-CIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN-----PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp TTCHHHHH-HHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC-----CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred chHHHHHH-HHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34456664 45455555555 555566654 66899999998776543 5899988877643 57899999999
Q ss_pred HHHHHHhCCCCCCHhhH
Q 025226 164 VWESMRKEDLFPDSQTY 180 (256)
Q Consensus 164 ~~~~m~~~g~~p~~~t~ 180 (256)
-+.++-.+|- |....|
T Consensus 90 rL~~la~sg~-p~~q~F 105 (115)
T 2uwj_G 90 RLAGLGGSSD-PALADF 105 (115)
T ss_dssp HHHHHHTCSS-HHHHHH
T ss_pred HHHHHHhCCC-HHHHHH
Confidence 9988877653 444444
No 295
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.85 E-value=23 Score=24.46 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=33.0
Q ss_pred hhccCCCcHH--HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 101 VLRLLKMDIV--AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 101 ~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
.+.|++++.. .+++.+...+..-.|.++++.+.+.+ ...+..|-=--|..+...|-
T Consensus 6 r~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~-~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 6 PPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKG-DAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp ----CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHCCC
Confidence 4455555443 57777777766667888888888776 45565554444555555554
No 296
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=40.66 E-value=76 Score=20.89 Aligned_cols=85 Identities=16% Similarity=0.058 Sum_probs=57.7
Q ss_pred CCCcHHHHHHHHHHHhhccCCCcHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 025226 86 FKDDEEKLQKFIKTHVLRLLKMDIVAVLIE--LERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQ 163 (256)
Q Consensus 86 ~~~~~~a~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~ 163 (256)
....++|. .+-+.....+. ...+++|+. +.+.|++++|+.+.+.+ +-||...|-+|-. .+.|..++++.
T Consensus 20 ~H~HqEA~-tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 20 NHYHEEAN-CIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp TTCHHHHH-HHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred chHHHHHH-HHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHH
Confidence 34456664 45455555555 555566654 66899999998876653 5899998877643 57788999999
Q ss_pred HHHHHHhCCCCCCHhhH
Q 025226 164 VWESMRKEDLFPDSQTY 180 (256)
Q Consensus 164 ~~~~m~~~g~~p~~~t~ 180 (256)
-+.++-.+|- |....|
T Consensus 91 rL~~la~sg~-p~~q~F 106 (116)
T 2p58_C 91 RLNRLARSQD-PRIQTF 106 (116)
T ss_dssp HHHHHTTCCC-HHHHHH
T ss_pred HHHHHHhCCC-HHHHHH
Confidence 8888877643 444444
No 297
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=40.40 E-value=0.28 Score=42.33 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=74.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG 156 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g 156 (256)
.+-.+..+.+.+.+|++.++ +.+- |+.+ .+|.+..+.|.+++-...+...++. ..++..=+.||-+|++.+
T Consensus 59 ~LgkAqL~~~~v~eAIdsyI----kA~D-ps~y~eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 59 QLAKAQLQKGMVKEAIDSYI----KADD-PSSYMEVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTN 130 (624)
T ss_dssp SHHHHTTTSSSCTTTTTSSC----CCSC-CCSSSHHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSC
T ss_pred HHHHHHHccCchHHHHHHHH----hCCC-hHHHHHHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhC
Confidence 33445555566666654332 2222 3222 5666666666666666555544433 223344456666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC--------------------CCCCChhHHH
Q 025226 157 KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS--------------------PDPPEELPFR 216 (256)
Q Consensus 157 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~--------------------g~~p~~~t~~ 216 (256)
++.+.++++. .||+.-...+=+-|...|.++.|.-+|..+..- .-.-|..||-
T Consensus 131 rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWK 203 (624)
T 3lvg_A 131 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWK 203 (624)
T ss_dssp SSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHH
T ss_pred cHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHH
Confidence 6554433322 155555555555566666666665555443211 1134677888
Q ss_pred HHHHHhcCCCChHHH
Q 025226 217 ILLKGLLPHPLLRSK 231 (256)
Q Consensus 217 ~li~~~~~~g~~~~a 231 (256)
-+-.+|...++++-|
T Consensus 204 eV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 204 EVCFACVDGKEFRLA 218 (624)
T ss_dssp HHTHHHHHSCTTTTT
T ss_pred HHHHHHhCchHHHHH
Confidence 888888888776544
No 298
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.21 E-value=32 Score=23.75 Aligned_cols=46 Identities=11% Similarity=-0.029 Sum_probs=26.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCCh
Q 025226 183 VIRGFLKDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 183 li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
++..+...+..-.|.++++.+.+.+...+..|.---|+.+.+.|.+
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444444445556666666666665555666666666666666643
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.11 E-value=1e+02 Score=22.11 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=52.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChh
Q 025226 138 YQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEEL 213 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~ 213 (256)
++-|+.-...-|.---.+ +++.++|..|..+|+--.. .-|-.--..+-..|++.+|.++|..=.+.+.+|...
T Consensus 59 YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp GTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred hccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 455666555555333333 4477899999998876554 456666666778899999999999999998888543
No 300
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.02 E-value=58 Score=23.90 Aligned_cols=88 Identities=9% Similarity=-0.014 Sum_probs=51.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH--HHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYI--YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTY--TEVIRG 186 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--~~li~~ 186 (256)
+.|...+..|+.+.+..+++.+.+.| ..++... -.+.+...+..|+.+-+.. +.+.|..|+.... .+.+..
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQTPLHLAVITTLPSVVRL----LVTAGASPMALDRHGQTAAHL 85 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCcccccCCCHHHHHHHcCCHHHHHH----HHHcCCCccccCCCCCCHHHH
Confidence 56777888899999998988877766 4444321 2234555567777764444 4445655543221 233333
Q ss_pred HHHcCChhHHHHHHHHH
Q 025226 187 FLKDGSPADAMNIYEDM 203 (256)
Q Consensus 187 ~~~~g~~~~a~~~~~~M 203 (256)
.+..|+.+-+..+++.-
T Consensus 86 A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHTTCHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 45666666555555443
No 301
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=39.95 E-value=23 Score=28.69 Aligned_cols=88 Identities=9% Similarity=0.085 Sum_probs=43.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
.+|.-|...|++++|.+.++++..-. + ...+++..+..++-+.. .-+.+-.++..+.+.|+ .|-..+..||.+
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p~-~-~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~----is~~~~~~Gf~~ 89 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASPS-L-LFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH----LSTAQYYQGLYE 89 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCGG-G-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS----SCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcc-c-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHHHHH
Confidence 47777777777777777776664222 1 12233333333333321 23455566666666433 333333333333
Q ss_pred c-------C-ChhHHHHHHHHHH
Q 025226 190 D-------G-SPADAMNIYEDMI 204 (256)
Q Consensus 190 ~-------g-~~~~a~~~~~~M~ 204 (256)
- . ++-.|...+.++.
T Consensus 90 ~~~~l~Dl~lDiP~a~~~La~~v 112 (339)
T 1ug3_A 90 ILELAEDMEIDIPHVWLYLAELV 112 (339)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHH
T ss_pred HHhhChHhhcCccchHHHHHHHH
Confidence 1 1 4555666666554
No 302
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=39.11 E-value=79 Score=20.64 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=37.8
Q ss_pred HHHHHHHHHHh--CCCC-----------CCHhhHHHHHHHHHHcC----ChhHHHHHHHHHHhCCC
Q 025226 160 EAMQVWESMRK--EDLF-----------PDSQTYTEVIRGFLKDG----SPADAMNIYEDMIKSPD 208 (256)
Q Consensus 160 ~a~~~~~~m~~--~g~~-----------p~~~t~~~li~~~~~~g----~~~~a~~~~~~M~~~g~ 208 (256)
+...++++|+. .|+. |+..+-+-++..+.++. +-++|..+-+.|.+.|+
T Consensus 20 ~l~~iv~~M~~p~~Gv~i~dr~~~~~~~~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G~ 85 (105)
T 1fsh_A 20 DMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHGF 85 (105)
T ss_dssp CHHHHHHHHHSTTSSSCSSCEEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHhCCCCCceeEEeEeCCEECCceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCCc
Confidence 34567777763 3543 88888899999999875 34899999999999885
No 303
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=38.77 E-value=6.1 Score=34.34 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=35.4
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhccCCCcHH-HHHHHHHHcCCHHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRLLKMDIV-AVLIELERQEETIL 124 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~ 124 (256)
+..+|....+.|..++.+ .++.+.++..-.|.+. .|+-+|++.+++.+
T Consensus 86 y~eVi~~A~~~~~~edLv-~yL~MaRk~~ke~~IDteLi~ayAk~~rL~e 134 (624)
T 3lvg_A 86 YMEVVQAANTSGNWEELV-KYLQMARKKARESYVETELIFALAKTNRLAE 134 (624)
T ss_dssp SSHHHHHTTTSSCCTTHH-HHHHTTSTTCCSTTTTHHHHHHHHTSCSSST
T ss_pred HHHHHHHHHhCCCHHHHH-HHHHHHHHHhcccccHHHHHHHHHhhCcHHH
Confidence 345688888999999987 6776665555556555 59999999887654
No 304
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=37.71 E-value=78 Score=21.27 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=16.9
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 025226 165 WESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 165 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
|+.+....+.|++..--.-|..+...++++.|..+.-.+.
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444443333333333344445555555444443
No 305
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=37.17 E-value=56 Score=22.42 Aligned_cols=15 Identities=7% Similarity=-0.126 Sum_probs=8.2
Q ss_pred HHHHHHHHcCCHHHH
Q 025226 111 AVLIELERQEETILA 125 (256)
Q Consensus 111 ~li~~~~~~~~~~~a 125 (256)
+.+...+..|+.+-+
T Consensus 44 t~L~~A~~~~~~~~v 58 (165)
T 3twr_A 44 TPLHFAAGYNRVSVV 58 (165)
T ss_dssp CHHHHHHHTTCHHHH
T ss_pred CHHHHHHHcChHHHH
Confidence 455555566665444
No 306
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=37.08 E-value=23 Score=24.19 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=28.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGK 157 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~ 157 (256)
.+++.+...+..-.|.++++.+++.+ ...+..|----|..+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~-~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRG-ENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTT-CCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhC-CCCCHhhHHHHHHHHHHCCC
Confidence 57777776666677778888887776 45555444444455555443
No 307
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.01 E-value=1.9e+02 Score=24.30 Aligned_cols=92 Identities=9% Similarity=0.082 Sum_probs=62.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HhhH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPD-----AYIYKDLIIALARTGKMNEAMQVWESMRK----EDLFPD--SQTY 180 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~--~~t~ 180 (256)
|...+-..|++.+|..++.++...- ...+ +..|-.-+..|...+++.+|..++.+... ....|+ ..-|
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et-~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~ 221 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVET-YGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYY 221 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHH
Confidence 6677778888888888888876442 1221 34666777888888888888888887643 222232 2445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHH
Q 025226 181 TEVIRGFLKDGSPADAMNIYEDMI 204 (256)
Q Consensus 181 ~~li~~~~~~g~~~~a~~~~~~M~ 204 (256)
...+.-+...+++.+|...|.+..
T Consensus 222 ~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 222 NLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 667777777788888777776654
No 308
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=36.06 E-value=1.2e+02 Score=21.83 Aligned_cols=49 Identities=12% Similarity=0.001 Sum_probs=22.1
Q ss_pred CCcHHHHHHHHHHHhhccCCCcHH---HHHHHHHHcCCHHHHHHHHHHHHhcC
Q 025226 87 KDDEEKLQKFIKTHVLRLLKMDIV---AVLIELERQEETILAVKIFDIIRKQD 136 (256)
Q Consensus 87 ~~~~~a~~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~ 136 (256)
|-..+.++.+++.+.+.|+.-|.. +.++...+.|.+ .-..+-.++.+.|
T Consensus 46 g~~~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KG 97 (177)
T 3e3v_A 46 DIHEDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKG 97 (177)
T ss_dssp TCCHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcC
Confidence 344444455555555555544433 244444333222 2234445555555
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=35.80 E-value=70 Score=25.54 Aligned_cols=70 Identities=13% Similarity=0.164 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCChhH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS--PADAMNIYEDMIKSPDPPEELP 214 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~M~~~g~~p~~~t 214 (256)
..+.+|.-|...|+.++|.+.++++....+. ..+.+..+..++-+.++ .+....++..+.+.|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3468889999999999999999999752111 12344455555554433 3457788888887766544443
No 310
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=34.99 E-value=1.1e+02 Score=21.09 Aligned_cols=68 Identities=10% Similarity=0.047 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 025226 139 QPDAYIYKDLIIALARTG---KMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGSPADAMNIYEDMIKS 206 (256)
Q Consensus 139 ~p~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~M~~~ 206 (256)
.|++.|==..--+++++. +..++..++++..+.+-.-....+=-|--|+.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 444444333444555554 44567888888776541112344445555677888899998888888776
No 311
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=34.95 E-value=93 Score=20.20 Aligned_cols=56 Identities=9% Similarity=0.081 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHhhHHHH
Q 025226 125 AVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMR-----KEDLFPDSQTYTEV 183 (256)
Q Consensus 125 a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~-----~~g~~p~~~t~~~l 183 (256)
|.++-+++...| +.|+..+..-++..|...+- + +.++-++.. ..|..|+..+.+.+
T Consensus 28 ae~L~eEfdefG-i~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFG-LDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHT-CBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 455666677777 88888888888888777764 2 444333332 34666666555443
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=34.71 E-value=1.5e+02 Score=22.47 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 025226 160 EAMQVWESMRKEDLFPDS-QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPP 210 (256)
Q Consensus 160 ~a~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p 210 (256)
++.++|..|..+||--.. .-|-.--..+-..|++.+|.++|+.=.+.+-+|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 334445544444433322 223333333444455555555554444444333
No 313
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=34.60 E-value=1.1e+02 Score=25.12 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCC
Q 025226 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPD----AYIYKDLIIALARTG-KMNEAMQVWESMRKEDL 173 (256)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~ 173 (256)
.++|.-|...||+++|.+.++++. .|+ .+.+..+..++-+.. .-+.+-.++..+...|+
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~-----~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ 79 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR-----APKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGI 79 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT-----CCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC-----CchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCC
Confidence 369999999999999999999986 343 345555555554432 23455677777777544
No 314
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.42 E-value=55 Score=18.93 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=13.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCC
Q 025226 190 DGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 190 ~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
.|+++.|...+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4566666666666666655555
No 315
>3tjy_A Effector protein hopab3; type III effector, hoppmal, structural genomics, PSI-biology; HET: MSE; 1.70A {Pseudomonas syringae PV} PDB: 3svi_A
Probab=33.34 E-value=90 Score=19.54 Aligned_cols=47 Identities=4% Similarity=-0.063 Sum_probs=30.2
Q ss_pred CCcHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 025226 106 KMDIVAVLIELERQE-ETILAVKIFDIIRKQDWYQPDAYIYKDLIIAL 152 (256)
Q Consensus 106 ~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~ 152 (256)
.|+...++.-+...| |+......|..+.....+..+..++++|+.-|
T Consensus 4 ~~~an~IVqQlv~aGadLa~~rtmlrn~m~g~~valsr~eq~Il~qHF 51 (94)
T 3tjy_A 4 VPRANRIVQQLVEAGADLANIRTMFRNMLRGEEMILSRAEQNVFLQHF 51 (94)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHhcccHHHHHHHHHHHHcCCchhhhHHHHHHHHHHC
Confidence 345555666666665 67777777776655544667777777776543
No 316
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=33.24 E-value=1.3e+02 Score=21.42 Aligned_cols=68 Identities=6% Similarity=-0.020 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHhh
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAY---IYKDLIIALAR-TGKMNEAMQVWESMRKEDLFPDSQT 179 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~y~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t 179 (256)
|.|...+..|+.+.-.++.+.+.+.| ..++.. -++.|..++.. ..+.....++.+-+.+.|..+|...
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d 111 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY 111 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCB
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccC
Confidence 34444455555554455555555555 444432 12223222211 2233334445555555555555443
No 317
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=31.97 E-value=1.5e+02 Score=28.50 Aligned_cols=120 Identities=14% Similarity=0.113 Sum_probs=77.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQ-PD--AYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFL 188 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~-p~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~ 188 (256)
++..|-+.+..+.+.++-..-.+...-. ++ ...|..+++++...|++++|...+-.+.....+ ......||...|
T Consensus 905 v~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lc 982 (1139)
T 4fhn_B 905 LSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLT 982 (1139)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHH
Confidence 6777888888888887777555442111 11 236889999999999999999999999875443 466788888888
Q ss_pred HcCChhHHH------------HHHHHHHhC--CCCCChhHHHHHHHHhcCCCChHHHHH
Q 025226 189 KDGSPADAM------------NIYEDMIKS--PDPPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 189 ~~g~~~~a~------------~~~~~M~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
..|..++-+ +++..-.+. .+...+.=|..|-.=+...|+++.|..
T Consensus 983 e~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~ 1041 (1139)
T 4fhn_B 983 KQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAA 1041 (1139)
T ss_dssp HHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHH
T ss_pred hCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHH
Confidence 877665543 333322111 111111224444444456777777777
No 318
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=31.95 E-value=2.3e+02 Score=23.81 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=32.8
Q ss_pred HHHHHH---HcCChhHHHHHHHHHHhCCCCCChhHHHHHHHHhcCCCC
Q 025226 183 VIRGFL---KDGSPADAMNIYEDMIKSPDPPEELPFRILLKGLLPHPL 227 (256)
Q Consensus 183 li~~~~---~~g~~~~a~~~~~~M~~~g~~p~~~t~~~li~~~~~~g~ 227 (256)
+|+++. +.++.+.|+.++.+|.+.|..|....=..++.+.-.-|.
T Consensus 258 ~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 258 LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 445543 457899999999999999988876666666666665553
No 319
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=31.39 E-value=53 Score=23.53 Aligned_cols=71 Identities=10% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 025226 110 VAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTG-KMNEAMQVWESMRKEDLFPDSQTYTEVIRGF 187 (256)
Q Consensus 110 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~ 187 (256)
.++|+-|...++.++|.+-++++.... +. ..++...+-.++-+.. .-+.+-.++..+.. +..+-..+..|+
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~~p~-~~-~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-----~~ls~~~i~~Gf 85 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLNLGE-MK-SGVPVLAVSLALEGKASHREMTSKLLSDLCG-----TVMSTTDVEKSF 85 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCSG-GG-GHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-----TTBCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc-cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----CCCCHHHHHHHH
Confidence 369999999999999999999987332 22 2233333333333332 23345577777643 444444444444
No 320
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=31.16 E-value=2.2e+02 Score=23.47 Aligned_cols=141 Identities=9% Similarity=0.029 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCcH---HHHHHHHHHHhhc----cCCCcHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 025226 78 FVILGLKRFKDDE---EKLQKFIKTHVLR----LLKMDIVAVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150 (256)
Q Consensus 78 ~~i~~~~~~~~~~---~a~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 150 (256)
.++...|..|+.+ +|.. .++..... .+.||....+-+.+- +.-++-..+++..++. .+..-=+.++.
T Consensus 202 ~~l~~ac~~g~~~c~~~A~~-~f~~~~~~~~~~~i~~dlr~~Vy~~~~-~~~~~~~~l~~~y~~s----~~~~ek~~ll~ 275 (419)
T 3rjo_A 202 QLLLLACVHNYQPCVQRAEG-YFRKWKESNGNLSLPVDVTLAVFAVGA-QSTEGWDFLYSKYQFS----LSSTEKSQIEF 275 (419)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-HHHHHHHTTTCSCCCGGGHHHHHHHHT-TSHHHHHHHHHHHHHC----CCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHH-HHHHHhhCCCCCCCCCCcceeEEeeee-CCHHHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 3466678887532 3433 33443332 367787754444432 2344455666666644 36667889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC-hhHHHHHHH----HHHhCCCCCChhHHHHHHHHhcCC
Q 025226 151 ALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDGS-PADAMNIYE----DMIKSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~----~M~~~g~~p~~~t~~~li~~~~~~ 225 (256)
+++...+.+...++++......+.+.. -...++.+.+.+.. .+-|.+++. .+.+. ..++..++..+|.+....
T Consensus 276 aL~~s~d~~ll~~~L~~~l~~~~ir~q-D~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~-~~~~~~~~~~~i~~~~~~ 353 (419)
T 3rjo_A 276 ALCRTQNKEKLQWLLDESFKGDKIKTQ-EFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTTNQ 353 (419)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTSSSCGG-GHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHTTTT
T ss_pred HcCCCCCHHHHHHHHHHHhCCCCCchh-HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHH-hCcCchhHHHHHHHHhhc
Confidence 999999999999999988775532222 23345556654432 344665554 23322 234557888888877765
Q ss_pred C
Q 025226 226 P 226 (256)
Q Consensus 226 g 226 (256)
-
T Consensus 354 ~ 354 (419)
T 3rjo_A 354 F 354 (419)
T ss_dssp C
T ss_pred C
Confidence 3
No 321
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=30.65 E-value=1.5e+02 Score=21.18 Aligned_cols=59 Identities=7% Similarity=0.089 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHH-H-----HHHcCChhHHHHHHHHHHh
Q 025226 146 KDLIIALARTGKMNEAMQVWESMRKEDLFP--DSQTYTEVIR-G-----FLKDGSPADAMNIYEDMIK 205 (256)
Q Consensus 146 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~-~-----~~~~g~~~~a~~~~~~M~~ 205 (256)
-.-+..|-. |++-+|.++|++.=...-.| ....|..||. . ..+.|+...|..++.+-..
T Consensus 37 ~~~i~lFn~-g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 37 VHGVRLYNS-GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHT-TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333333333 88888888888776554344 4566777777 1 2346888888888887754
No 322
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=30.46 E-value=1.2e+02 Score=26.70 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=14.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 025226 112 VLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNE 160 (256)
Q Consensus 112 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~ 160 (256)
+|..|.+.|-.+.|.+++..+-.+- .-+-..| .-|..|+|+|++++
T Consensus 522 vL~iCa~l~L~~~ar~I~k~~g~k~--l~~g~~g-eAL~~f~rA~~~~~ 567 (570)
T 3f3f_C 522 MLSICVEWRLPEIAKEIYTTLGNQM--LSAHNII-ESIANFSRAGKYEL 567 (570)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHC--------------------------
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHH--HHCccHH-HHHHHHHHcCChhh
Confidence 6666666666666666666655442 2233344 44555566665554
No 323
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.25 E-value=1.8e+02 Score=22.08 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=18.1
Q ss_pred CCChhHHHHHHHHhcCCCChHHHHH
Q 025226 209 PPEELPFRILLKGLLPHPLLRSKVK 233 (256)
Q Consensus 209 ~p~~~t~~~li~~~~~~g~~~~a~~ 233 (256)
.++...-...+..+.+.|+.++|.+
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~ 112 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALD 112 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHH
Confidence 4455666677788888888888777
No 324
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.98 E-value=1.7e+02 Score=21.74 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=54.9
Q ss_pred CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 025226 138 YQPDAYIYKDLIIALAR--TGKMNEAMQVWESMRKEDLFPD-SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPE 211 (256)
Q Consensus 138 ~~p~~~~y~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~ 211 (256)
++-|+.--..-|.---. ++...++.++|..|..+|+--. ..-|-.--..+...|++.+|.++|+.=.+.+.+|-
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 45566544444443333 5557899999999999877655 45567777777789999999999999888888774
No 325
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.92 E-value=3.4e+02 Score=25.23 Aligned_cols=147 Identities=9% Similarity=-0.054 Sum_probs=86.3
Q ss_pred HHHHhhcCCCcH---HHHHHHHHHHhh----ccCCCcHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 025226 79 VILGLKRFKDDE---EKLQKFIKTHVL----RLLKMDIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII 150 (256)
Q Consensus 79 ~i~~~~~~~~~~---~a~~~~~~~~~~----~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~ 150 (256)
++...|+.|..+ +|. ..++.... ..+.||.. ++...-.+.|.-++-..+++..++.. +..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~-~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~----~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAK-TLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ----LVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHH-HHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC----SHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHH-HHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC----CHHHHHHHHH
Confidence 466677777543 233 33334332 23667877 34445556788777777888877554 5556678999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCC-hhHHHHHHHHH-H--hCCCCCChhHHHHHHHHhcCC
Q 025226 151 ALARTGKMNEAMQVWESMRKED-LFPDSQTYTEVIRGFLKDGS-PADAMNIYEDM-I--KSPDPPEELPFRILLKGLLPH 225 (256)
Q Consensus 151 ~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~M-~--~~g~~p~~~t~~~li~~~~~~ 225 (256)
+++...+.+...++++.....+ +.+ . -...++.+.+.+.. .+.|++++.+= . ......+..++..+|.+....
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~-q-d~~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~~~ 844 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRK-Q-DATSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVTRR 844 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCG-G-GHHHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHHTT
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCch-h-hHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 9999999999999988876543 322 2 23345555554332 23455555431 1 112334556677888877665
Q ss_pred CChHHHH
Q 025226 226 PLLRSKV 232 (256)
Q Consensus 226 g~~~~a~ 232 (256)
-.-++.+
T Consensus 845 ~~t~~~~ 851 (909)
T 4fke_A 845 FSSEFEL 851 (909)
T ss_dssp CCSHHHH
T ss_pred cCCHHHH
Confidence 4333333
No 326
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=29.03 E-value=1.3e+02 Score=19.95 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHHHcCChhHHHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRK-EDLFPDSQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
+++|+.-+++..+. .+|......+|..+-.+ ++.|.++.....+ .|+ +..++...++...+.|-+++. +.+
T Consensus 4 ~~~al~~L~e~~~~---~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w 75 (119)
T 1wty_A 4 LARAVERLKAALER---PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFW 75 (119)
T ss_dssp HHHHHHHHHHHHSS---CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHH
T ss_pred HHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHH
Confidence 45555555555432 34666666666666555 5555555555544 355 466667777777777766554 445
Q ss_pred HHHH
Q 025226 201 EDMI 204 (256)
Q Consensus 201 ~~M~ 204 (256)
..|.
T Consensus 76 ~~m~ 79 (119)
T 1wty_A 76 LEML 79 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 327
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=28.57 E-value=3.6e+02 Score=25.07 Aligned_cols=108 Identities=6% Similarity=0.017 Sum_probs=70.8
Q ss_pred HHHHHHHcCC---HHHHHHHHHHHHhcC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 025226 112 VLIELERQEE---TILAVKIFDIIRKQD---WYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIR 185 (256)
Q Consensus 112 li~~~~~~~~---~~~a~~~~~~m~~~~---~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~ 185 (256)
++...|+.|+ .+.|.+.|+.....+ .+.||.. +.+...-.+.|.-++-..+++..+.. .+..--..++.
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~ll~ 766 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKLRS 766 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHHHH
Confidence 6777788775 468888898876542 1455543 33444445678888878888888874 34555678899
Q ss_pred HHHHcCChhHHHHHHHHHHhCC-CCCChhHHHHHHHHhcCCC
Q 025226 186 GFLKDGSPADAMNIYEDMIKSP-DPPEELPFRILLKGLLPHP 226 (256)
Q Consensus 186 ~~~~~g~~~~a~~~~~~M~~~g-~~p~~~t~~~li~~~~~~g 226 (256)
+++-..+.+...++++...... +++.. . ..++.+...+.
T Consensus 767 aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~-~~~~~~v~~n~ 806 (909)
T 4fke_A 767 ALACSNEVWLLNRYLGYTLNPDLIRKQD-A-TSTINSIASNV 806 (909)
T ss_dssp HHTTCCCHHHHHHHHHHTTCTTTSCGGG-H-HHHHHHHHHST
T ss_pred HhCCCCCHHHHHHHHHHHhCCCCCchhh-H-HHHHHHHhcCh
Confidence 9988888888888888776643 44432 2 23444554443
No 328
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.95 E-value=89 Score=23.67 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFP 175 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 175 (256)
.+....+|..|...|--.--..-|...-..+-..|++.+|.++|+.=.+.+-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 356777888888777223445667777777778888888888888777765555
No 329
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=27.94 E-value=1.7e+02 Score=21.02 Aligned_cols=54 Identities=7% Similarity=-0.122 Sum_probs=29.9
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhh-ccCCCc-----HH-----HHHHHHHHcCCHHHHHHHHHHHHh
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVL-RLLKMD-----IV-----AVLIELERQEETILAVKIFDIIRK 134 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-----~~-----~li~~~~~~~~~~~a~~~~~~m~~ 134 (256)
+..+...+.++.|. .+.+.... .+..|+ .. -+-+++...|++..|...|++..+
T Consensus 27 ik~L~d~~LY~sA~-~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 27 VRDMAAAGLHSNVR-LLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHTTCHHHHH-HHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHH-HHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 56666777777764 33222211 112233 11 255666777888888888887543
No 330
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=27.65 E-value=1.3e+02 Score=19.77 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=14.4
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 025226 121 ETILAVKIFDIIRKQDWYQP 140 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p 140 (256)
|..++-++|+-+.+.||+.+
T Consensus 88 D~~K~~rIydff~~~GWi~~ 107 (108)
T 2cuj_A 88 DVNKTRKIYDFLIREGYITK 107 (108)
T ss_dssp CHHHHHHHHHHHHTTTSSCC
T ss_pred cHHHHHHHHHHHHHcCCCCC
Confidence 46667778888888887654
No 331
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=27.13 E-value=95 Score=17.87 Aligned_cols=38 Identities=16% Similarity=0.124 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 025226 122 TILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEA 161 (256)
Q Consensus 122 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a 161 (256)
-++|..+-+++...+ ....++--+-+..+.+.|++++|
T Consensus 22 H~EA~tIA~~L~~~~--~~eE~v~mIr~~SLmNrG~Yq~A 59 (61)
T 3ph0_C 22 HQEAASIADWLAQEE--CMAECVTLIRLSSLMNQGDYQRA 59 (61)
T ss_dssp HHHHHHHHHHHHTSS--TTHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHccchHhHh
Confidence 455555555555443 11222222223344445555544
No 332
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.00 E-value=1.5e+02 Score=21.45 Aligned_cols=146 Identities=10% Similarity=-0.014 Sum_probs=72.1
Q ss_pred HHHhhcCCCcHHHHHHHHHHHhhccCCCcH--HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHh
Q 025226 80 ILGLKRFKDDEEKLQKFIKTHVLRLLKMDI--VAVLIELERQEETILAVKIFDIIRKQDWYQPDA---YIYKDLIIALAR 154 (256)
Q Consensus 80 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~y~~li~~~~~ 154 (256)
+...++.|+.+... .++..-......++. .+.|...+..|+.+-+..++ +.| ..++. .-++ .+...+.
T Consensus 10 l~~A~~~g~~~~v~-~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~g-~~~~~~~~~g~t-~L~~A~~ 82 (231)
T 3aji_A 10 ICNLAYSGKLDELK-ERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL----QLG-VPVNDKDDAGWS-PLHIAAS 82 (231)
T ss_dssp HHHHHHHTCHHHHH-HHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH----HTT-CCSCCCCTTSCC-HHHHHHH
T ss_pred HHHHHHhCCHHHHH-HHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH----HhC-CCCCCcCCCCCC-HHHHHHH
Confidence 55557778776653 343322111111222 26777777888876655444 445 44432 2233 3444456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHH--HHHHHHhcCCCChH
Q 025226 155 TGKMNEAMQVWESMRKEDLFPDS---QTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF--RILLKGLLPHPLLR 229 (256)
Q Consensus 155 ~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~--~~li~~~~~~g~~~ 229 (256)
.|+.+-+ +.+.+.|..++. .-++.|.. .+..|+.+ +.+.+.+.|..|+.... .+.+...+..|..+
T Consensus 83 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDEIV----KALLVKGAHVNAVNQNGCTPLHY-AASKNRHE----IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHHHH----HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHHHH----HHHHHcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 6776544 444455655543 33344444 45667665 44445566766654322 13344444455544
Q ss_pred HHHH-hhhhhcCCC
Q 025226 230 SKVK-KDFEELFPE 242 (256)
Q Consensus 230 ~a~~-~~~~~~~p~ 242 (256)
.++ ....+..++
T Consensus 154 -~v~~Ll~~g~~~~ 166 (231)
T 3aji_A 154 -MVHILLFYKASTN 166 (231)
T ss_dssp -HHHHHHHTTCCSC
T ss_pred -HHHHHHhcCCCcc
Confidence 333 444555444
No 333
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=26.74 E-value=1e+02 Score=22.99 Aligned_cols=122 Identities=9% Similarity=0.006 Sum_probs=63.6
Q ss_pred HHhhccCCCcHH-----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHH------------HHHHHHHHHHhcCCHHHH
Q 025226 99 THVLRLLKMDIV-----AVLIELERQEETILAVKIFDIIRKQDWYQPDAY------------IYKDLIIALARTGKMNEA 161 (256)
Q Consensus 99 ~~~~~~~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------~y~~li~~~~~~g~~~~a 161 (256)
.+.+.|..++.. +.+...+..|+.+-+. .+.+.| ..++.. .-.+.+...+..|..+-+
T Consensus 90 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 164 (285)
T 1wdy_A 90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALK----FLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL 164 (285)
T ss_dssp HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHH----HHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHH----HHHHhC-CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHH
Confidence 334455544332 4666667778765544 444444 343321 011344555667777665
Q ss_pred HHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCChhHH--HHHHHHhcCCCChH
Q 025226 162 MQVWESMRKEDLFPD---SQTYTEVIRGFLKDGSPADAMNIYEDMIKSPDPPEELPF--RILLKGLLPHPLLR 229 (256)
Q Consensus 162 ~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~M~~~g~~p~~~t~--~~li~~~~~~g~~~ 229 (256)
..+++.. |..++ ....+.+..+ +..|..+...++.+.+.+.|..|+.... .+.+...++.|..+
T Consensus 165 ~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 233 (285)
T 1wdy_A 165 KILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG 233 (285)
T ss_dssp HHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 5555431 33333 2333444444 4566666667788888888876654321 23344444456543
No 334
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=26.65 E-value=1.1e+02 Score=22.09 Aligned_cols=19 Identities=11% Similarity=-0.093 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 025226 111 AVLIELERQEETILAVKIF 129 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~ 129 (256)
+.+...+..|+++-+..++
T Consensus 44 t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHhCCHHHHHHHH
Confidence 4666666777765544433
No 335
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.43 E-value=2.8e+02 Score=23.02 Aligned_cols=93 Identities=5% Similarity=-0.057 Sum_probs=58.9
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHhhccCCC----cHH-HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH--
Q 025226 78 FVILGLKRFKDDEEKLQKFIKTHVLRLLKM----DIV-AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLII-- 150 (256)
Q Consensus 78 ~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~-- 150 (256)
.+-.-|.+.|+.++|++.+ ..+...-..+ +.. .+|+.+...+++..+....+.....-.-.+|...-+.+=.
T Consensus 136 ~la~~~~~~Gd~~~A~~~~-~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~ 214 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTL-GKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYY 214 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHH-HHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 4566778999999998655 4554433222 222 5899999999999999999987543111233322222211
Q ss_pred --HHHhcCCHHHHHHHHHHHHhC
Q 025226 151 --ALARTGKMNEAMQVWESMRKE 171 (256)
Q Consensus 151 --~~~~~g~~~~a~~~~~~m~~~ 171 (256)
.+...+++.+|.+.|-+....
T Consensus 215 gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 215 GIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhChHHHHHHHHHHHhcc
Confidence 123458899999988887653
No 336
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=25.90 E-value=1.1e+02 Score=22.26 Aligned_cols=10 Identities=0% Similarity=0.062 Sum_probs=4.1
Q ss_pred HHHHHHHhcC
Q 025226 127 KIFDIIRKQD 136 (256)
Q Consensus 127 ~~~~~m~~~~ 136 (256)
++++.+.+.|
T Consensus 56 ~~v~~Ll~~~ 65 (240)
T 3eu9_A 56 DLVKYYISKG 65 (240)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHcC
Confidence 3444444443
No 337
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=25.76 E-value=88 Score=18.56 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=20.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLK 189 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~ 189 (256)
++.++..++..--.+++.-.+++..+.|. .+..+|---++..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 44455555555555555555555555442 344444444444443
No 338
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=25.63 E-value=56 Score=19.73 Aligned_cols=35 Identities=14% Similarity=0.374 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHh-CCCCCChhHHHHHHHHhcCCCCh
Q 025226 193 PADAMNIYEDMIK-SPDPPEELPFRILLKGLLPHPLL 228 (256)
Q Consensus 193 ~~~a~~~~~~M~~-~g~~p~~~t~~~li~~~~~~g~~ 228 (256)
.++|.+.|.+|++ .++.|+ .||.-.+.-++...++
T Consensus 14 ~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~DpRY 49 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDPRY 49 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCccc
Confidence 4667777776664 355544 6677776666655443
No 339
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=24.91 E-value=86 Score=17.78 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=6.1
Q ss_pred hhHHHHHHHHH
Q 025226 193 PADAMNIYEDM 203 (256)
Q Consensus 193 ~~~a~~~~~~M 203 (256)
++.|++++.+|
T Consensus 38 le~AmewL~k~ 48 (54)
T 2cos_A 38 IEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 55555555554
No 340
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=24.57 E-value=1.4e+02 Score=18.88 Aligned_cols=20 Identities=15% Similarity=0.370 Sum_probs=13.9
Q ss_pred CHHHHHHHHHHHHhcCCCCC
Q 025226 121 ETILAVKIFDIIRKQDWYQP 140 (256)
Q Consensus 121 ~~~~a~~~~~~m~~~~~~~p 140 (256)
+..++-++|+-+.+.||+.+
T Consensus 70 D~~K~~~iydf~~~~Gwi~~ 89 (90)
T 2aqe_A 70 DVNKTRKIYDFLIREGYITK 89 (90)
T ss_dssp SSHHHHHHHHHHHHTTSSCC
T ss_pred cHHHHHHHHHHHHHcCCCCC
Confidence 45566678888888886644
No 341
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=24.31 E-value=1.1e+02 Score=21.63 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc
Q 025226 111 AVLIELERQEETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKD 190 (256)
Q Consensus 111 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 190 (256)
+.+...+..|+.+-+..+++.-...- -..|..-. +.+..-+..|..+-+..+++.-...--.+|..-++.|..+. ..
T Consensus 74 t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~-~~ 150 (201)
T 3hra_A 74 SPYLYAGAQGRTEILAYMLKHATPDL-NKHNRYGG-NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV-GL 150 (201)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCCCT-TCCCTTSC-CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH-HS
T ss_pred CHHHHHHHcCCHHHHHHHHhccCccc-ccccCCCC-cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH-Hh
Confidence 45555556666665555543311000 01111111 22334455566655555444321110112333344444443 33
Q ss_pred CC-hhHHHHHHHHHHhCCCCCCh
Q 025226 191 GS-PADAMNIYEDMIKSPDPPEE 212 (256)
Q Consensus 191 g~-~~~a~~~~~~M~~~g~~p~~ 212 (256)
++ ...-.++.+.+.+.|..|+.
T Consensus 151 ~~~~~~~~~~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 151 REGNQLYQDIVKLLMENGADQSI 173 (201)
T ss_dssp SCCSHHHHHHHHHHHHTTCCTTC
T ss_pred ccchhhHHHHHHHHHHCCCCCCc
Confidence 33 33335566666666665553
No 342
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.26 E-value=1.5e+02 Score=23.10 Aligned_cols=105 Identities=13% Similarity=-0.028 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCChhHHHHHH
Q 025226 126 VKIFDIIRKQDWYQPDAYI--YKDLIIALARTGKMNEAMQVWESMRKEDLFPD---SQTYTEVIRGFLKDGSPADAMNIY 200 (256)
Q Consensus 126 ~~~~~~m~~~~~~~p~~~~--y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~ 200 (256)
..+.+.+.+.| ..++... -.+.+...+..|..+.+..+++. .|..++ ..-++.|..+ ++.|+.+ +.
T Consensus 219 ~~i~~lLl~~g-ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv 289 (337)
T 4g8k_A 219 EAITHLLLDHG-ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IA 289 (337)
T ss_dssp HHHHHHHHHTT-CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HH
T ss_pred HHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HH
Confidence 34444556666 5554321 22445566778888776665542 233333 3334455555 4567654 44
Q ss_pred HHHHhCCCCCChhHHHHHHHHhcCCCChHHHHH-hhhhhcCCCc
Q 025226 201 EDMIKSPDPPEELPFRILLKGLLPHPLLRSKVK-KDFEELFPEK 243 (256)
Q Consensus 201 ~~M~~~g~~p~~~t~~~li~~~~~~g~~~~a~~-~~~~~~~p~~ 243 (256)
+-+.+.|..||..+ .+..-++.|.. +.++ ....|-.||.
T Consensus 290 ~~Ll~~GAd~n~~~---~L~~A~~~~~~-~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 290 ELLCKRGASTDCGD---LVMTARRNYDH-SLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHHTTSCSSTTCC---HHHHHHHTTCH-HHHHHHHHTTCCC--
T ss_pred HHHHHCCCCCCCCC---HHHHHHHcCCH-HHHHHHHHCcCCCCC
Confidence 55667888888765 33333455664 3555 5556666664
No 343
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.09 E-value=41 Score=27.23 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHhCCC
Q 025226 145 YKDLIIALARTGKMNEAMQVWESMRKEDLFPDSQTYTEVIRGFLKDG-SPADAMNIYEDMIKSPD 208 (256)
Q Consensus 145 y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~M~~~g~ 208 (256)
.+.+|.-|...|+.++|.+.++++......| ...+..+..++=+.. ..+.+..++..+.+.|+
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 5678899999999999999999986422211 222333333322211 23345566666665543
No 344
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=22.99 E-value=2e+02 Score=20.10 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=43.3
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 025226 112 VLIELERQE---ETILAVKIFDIIRKQDWYQPDAYIYKDLIIALARTGKMNEAMQVWESMRKEDLFPD 176 (256)
Q Consensus 112 li~~~~~~~---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 176 (256)
+-.++.++. +..+++.+++++.+.+ ..-.....=-|--++.+.|++++|.+..+.+.+. .|+
T Consensus 45 YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 45 YAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 555666765 4568889999988765 2222333334556788999999999999999883 464
No 345
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=22.13 E-value=3.4e+02 Score=22.45 Aligned_cols=157 Identities=11% Similarity=-0.066 Sum_probs=92.6
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH------HHHHHHHHc-CCHHHHHHH----HHHHHhcCCCCCCHH
Q 025226 76 ALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV------AVLIELERQ-EETILAVKI----FDIIRKQDWYQPDAY 143 (256)
Q Consensus 76 ~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~------~li~~~~~~-~~~~~a~~~----~~~m~~~~~~~p~~~ 143 (256)
...+..-|.+.|+.++.. .++.....-- ..|-.. ++|+.+... +..+.-.++ +++.......-....
T Consensus 22 ~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELA-DLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHH-HHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567788899988876 4443332211 112222 477777664 334444444 444443320000111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCChhHHH
Q 025226 144 IYKDLIIALARTGKMNEAMQVWESMRKE--DLFPD---SQTYTEVIRGFLKDGSPADAMNIYEDMIKS--PDPPEELPFR 216 (256)
Q Consensus 144 ~y~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~M~~~--g~~p~~~t~~ 216 (256)
.=.-+...|...|++.+|.+++.++.+. .+... ...|-.-+..|...+++.++...+..-... .+.|++..-
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~- 179 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ- 179 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH-
Confidence 2236789999999999999999988863 22111 244667778888999999999999877643 333443332
Q ss_pred HHHHHhc------CCCChHHHHHh
Q 025226 217 ILLKGLL------PHPLLRSKVKK 234 (256)
Q Consensus 217 ~li~~~~------~~g~~~~a~~~ 234 (256)
..|+.|+ ..+++.+|..-
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~ 203 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSY 203 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHH
Confidence 3333332 67788888773
No 346
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=21.41 E-value=3.3e+02 Score=22.15 Aligned_cols=73 Identities=7% Similarity=0.099 Sum_probs=42.7
Q ss_pred hHHHHHHHhhcCCCcHHHHHHHHHHHhhcc-CCCcHH-HHHHHHHHcC--CHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 025226 75 EALFVILGLKRFKDDEEKLQKFIKTHVLRL-LKMDIV-AVLIELERQE--ETILAVKIFDIIRKQDWYQPDAYIYKDLI 149 (256)
Q Consensus 75 ~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~-~li~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~y~~li 149 (256)
....+|..|...++.++|+. .++++.... ..|... .+|......+ .-+.+-.++..+...+ +.+.......+.
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~-~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~-~ls~~~~~~Gf~ 90 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVN-GVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEG-IATSDNFMQAFL 90 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHH-HHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTT-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHH-HHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCC-CCCHHHHHHHHH
Confidence 44567899999999999984 445654321 223333 2444333333 2467778888888777 444433333333
Done!