BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025227
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9G4|ENDO2_ARATH Endonuclease 2 OS=Arabidopsis thaliana GN=ENDO2 PE=2 SV=1
Length = 290
Score = 407 bits (1046), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/252 (75%), Positives = 219/252 (86%), Gaps = 2/252 (0%)
Query: 5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNR 64
Q+RL E AA AVK+LLPESA+ DL S+C WAD VKF YHWSS LH+I+TPD C+YQYNR
Sbjct: 41 QTRLDETAAKAVKELLPESAEGDLSSLCLWADRVKFRYHWSSPLHYINTPD-ACSYQYNR 99
Query: 65 DCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124
DCKDE G KGRCVAGAI NYTTQLLSY +A+SS S+YNLTEALLF+SHF+GDIHQPLHV
Sbjct: 100 DCKDESGEKGRCVAGAIYNYTTQLLSYKTAASSQSQYNLTEALLFVSHFMGDIHQPLHVS 159
Query: 125 FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADL 184
+ SD+GGNTI+VHWYTRK LHH+WD+NIIETAE YNS ++G+VDA+++NITT+WAD
Sbjct: 160 YASDKGGNTIEVHWYTRKANLHHIWDSNIIETAEADLYNSALEGMVDALKKNITTEWADQ 219
Query: 185 VKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGG 244
VK+WETC+ TACPD+YASEGI+AACDWAYKGV+EG LEDEYF SRLPIV RLAQGG
Sbjct: 220 VKRWETCT-KKTACPDIYASEGIQAACDWAYKGVTEGDTLEDEYFYSRLPIVYQRLAQGG 278
Query: 245 VRLAATLNRIFG 256
VRLAATLNRIFG
Sbjct: 279 VRLAATLNRIFG 290
>sp|F4JJL0|ENDO4_ARATH Endonuclease 4 OS=Arabidopsis thaliana GN=ENDO4 PE=3 SV=1
Length = 299
Score = 312 bits (800), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 147/253 (58%), Positives = 183/253 (72%), Gaps = 2/253 (0%)
Query: 5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKFHYHW--SSALHFIDTPDNLCTYQY 62
+S E AVK+LLP+SAD DL SVC+W D +K H+ W +S LH++DTPD C Y+Y
Sbjct: 38 ESYFEEETVAAVKKLLPKSADGDLASVCSWPDEIKHHWQWRWTSPLHYVDTPDYRCNYEY 97
Query: 63 NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
RDC D + RCV GAI NYT QL+S + S + YNLTEAL+FLSHFIGDIHQPLH
Sbjct: 98 CRDCHDTHKNQDRCVTGAIFNYTMQLMSASENSDTIVHYNLTEALMFLSHFIGDIHQPLH 157
Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA 182
VGF D GGNTI V WY RK LHHVWDN IIE+A + +YN ++ +++A+Q N+T DW+
Sbjct: 158 VGFLGDEGGNTITVRWYRRKTNLHHVWDNMIIESALKTYYNKSLPLMIEALQANLTNDWS 217
Query: 183 DLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQ 242
+ V WE+C N TACP+ YASE I AC +AY+ + G+ L D+YF SRLPIV+ RLAQ
Sbjct: 218 NDVPLWESCQLNQTACPNPYASESINLACKYAYRNATPGTTLGDDYFLSRLPIVEKRLAQ 277
Query: 243 GGVRLAATLNRIF 255
GG+RLAATLNRIF
Sbjct: 278 GGIRLAATLNRIF 290
>sp|Q9SXA6|ENDO1_ARATH Endonuclease 1 OS=Arabidopsis thaliana GN=ENDO1 PE=1 SV=1
Length = 305
Score = 283 bits (725), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 136/254 (53%), Positives = 172/254 (67%), Gaps = 5/254 (1%)
Query: 5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
Q+ L A V+ LLP+ DL ++C W D ++ + Y W+S LH+IDTPD C+Y+Y
Sbjct: 42 QNLLEAGPAHVVENLLPDYVKGDLSALCVWPDQIRHWYKYRWTSHLHYIDTPDQACSYEY 101
Query: 63 NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
+RDC D+ G+K CV GAI N+T+QL Y +S YN+TEALLFLSHF+GDIHQP+H
Sbjct: 102 SRDCHDQHGLKDMCVDGAIQNFTSQLQHYGEGTSD-RRYNMTEALLFLSHFMGDIHQPMH 160
Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD-W 181
VGFTSD GGNTID+ WY K LHHVWD II TA + Y+ N+D L + +++NIT W
Sbjct: 161 VGFTSDEGGNTIDLRWYKHKSNLHHVWDREIILTALKENYDKNLDLLQEDLEKNITNGLW 220
Query: 182 ADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLA 241
D + W C+ + ACP YASE IK AC W YKGV G L +EYFN+RLPIV R+
Sbjct: 221 HDDLSSWTECN-DLIACPHKYASESIKLACKWGYKGVKSGETLSEEYFNTRLPIVMKRIV 279
Query: 242 QGGVRLAATLNRIF 255
QGGVRLA LNR+F
Sbjct: 280 QGGVRLAMILNRVF 293
>sp|Q8LDW6|ENDO3_ARATH Endonuclease 3 OS=Arabidopsis thaliana GN=ENDO3 PE=2 SV=1
Length = 294
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/253 (53%), Positives = 173/253 (68%), Gaps = 7/253 (2%)
Query: 5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQY 62
QS E AVK+LLPESA+ +L +VC+W D +K + W+SALHF DTPD C Y+Y
Sbjct: 38 QSYFEEDTVVAVKKLLPESANGELAAVCSWPDEIKKLPQWRWTSALHFADTPDYKCNYEY 97
Query: 63 NRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH 122
+RDC K CV GAI NYT QL+S + S S YNLTEAL+FLSH++GDIHQPLH
Sbjct: 98 SRDCP-----KDWCVTGAIFNYTNQLMSTSENSQSIVHYNLTEALMFLSHYMGDIHQPLH 152
Query: 123 VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWA 182
GF D GGN I VHWY ++ LH VWD+ IIE+A E +YNS++ ++ +Q + W+
Sbjct: 153 EGFIGDLGGNKIKVHWYNQETNLHRVWDDMIIESALETYYNSSLPRMIHELQAKLKNGWS 212
Query: 183 DLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQ 242
+ V WE+C N TACP+ YASE I AC +AY+ + G+ L D YF SRLP+V+ RLAQ
Sbjct: 213 NDVPSWESCQLNQTACPNPYASESIDLACKYAYRNATAGTTLGDYYFVSRLPVVEKRLAQ 272
Query: 243 GGVRLAATLNRIF 255
GG+RLA TLNRIF
Sbjct: 273 GGIRLAGTLNRIF 285
>sp|F4JJL3|ENDO5_ARATH Endonuclease 5 OS=Arabidopsis thaliana GN=ENDO5 PE=2 SV=1
Length = 296
Score = 272 bits (695), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 130/244 (53%), Positives = 170/244 (69%), Gaps = 3/244 (1%)
Query: 15 AVKQLLPESADND-LGSVCTWADHVK--FHYHWSSALHFIDTPDNLCTYQYNRDCKDEDG 71
AVK+LLPES D L C+W D +K + W+S LH+++TP+ C Y+Y RDC D
Sbjct: 44 AVKKLLPESVDGGGLADFCSWPDEIKKLSQWQWTSTLHYVNTPEYRCNYEYCRDCHDTHK 103
Query: 72 VKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGG 131
K CV GAI NYT QL+S + S + YNLTEALLFLSH++GD+HQPLH GF D GG
Sbjct: 104 HKDWCVTGAIFNYTNQLMSASENSQNIVHYNLTEALLFLSHYMGDVHQPLHTGFLGDLGG 163
Query: 132 NTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETC 191
NTI V+WY K LHHVWDN II++A E +YNS++ ++ A+Q + W++ V W++C
Sbjct: 164 NTIIVNWYHNKSNLHHVWDNMIIDSALETYYNSSLPHMIQALQAKLKNGWSNDVPSWKSC 223
Query: 192 SANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATL 251
+ ACP++YASE I AC +AY+ + G+ L DEYF SRLP+V+ RLAQGG+RLAATL
Sbjct: 224 HFHQKACPNLYASESIDLACKYAYRNATPGTTLGDEYFLSRLPVVEKRLAQGGIRLAATL 283
Query: 252 NRIF 255
NRIF
Sbjct: 284 NRIF 287
>sp|P24021|NUS1_ASPOR Nuclease S1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=nucS PE=1 SV=2
Length = 287
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 86/271 (31%), Positives = 120/271 (44%), Gaps = 43/271 (15%)
Query: 5 QSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNL---CT 59
QS + + + +L + + + L +V TWAD K+ +S HFID DN C
Sbjct: 34 QSFVASSTESFCQNILGDDSTSYLANVATWADTYKYTDAGEFSKPYHFIDAQDNPPQSCG 93
Query: 60 YQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQ 119
Y+RDC G G C AI NYT LL + S + AL F+ H IGDIHQ
Sbjct: 94 VDYDRDC----GSAG-CSISAIQNYTNILLESPNGSEA------LNALKFVVHIIGDIHQ 142
Query: 120 PLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITT 179
PLH + GGN IDV + LHH+WD N+ E A + S D + + I T
Sbjct: 143 PLH-DENLEAGGNGIDVTYDGETTNLHHIWDTNMPEEAAGGYSLSVAKTYADLLTERIKT 201
Query: 180 --------DWADLVKKWETCS--------ANNTACPDVYASEGIKAACDWAYKGVSEGSV 223
W D + + S AN C V +G+ AY ++
Sbjct: 202 GTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTVL-DDGL------AYINSTD--- 251
Query: 224 LEDEYFNSRLPIVKLRLAQGGVRLAATLNRI 254
L EY++ P+ + +A+ G RLAA L+ I
Sbjct: 252 LSGEYYDKSQPVFEELIAKAGYRLAAWLDLI 282
>sp|P24504|NUP3_PENSQ Nuclease PA3 OS=Penicillium sp. PE=1 SV=1
Length = 270
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 108/250 (43%), Gaps = 54/250 (21%)
Query: 34 WADHVKFHY--HWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQL 88
WAD + WS++LHFID DN C Y RDC G G C AI NYT ++
Sbjct: 43 WADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV 97
Query: 89 LSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 148
+ SS S N EAL FL HFIGD+ QPLH + GGN I+V + LH
Sbjct: 98 -----SDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSD 151
Query: 149 WD--------------------NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVK 186
WD +++ E Y + G + D I + ITT
Sbjct: 152 WDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQATGWIKGDNISEPITT-----AT 206
Query: 187 KWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVR 246
+W + AN C V G A + L Y++S + ++L++A+GG R
Sbjct: 207 RWAS-DANALVCT-VVMPHGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYR 255
Query: 247 LAATLNRIFG 256
LA +N I G
Sbjct: 256 LANWINEIHG 265
>sp|P24289|NUP1_PENCI Nuclease P1 OS=Penicillium citrinum PE=1 SV=1
Length = 270
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 108/250 (43%), Gaps = 54/250 (21%)
Query: 34 WADHVKFHY--HWSSALHFIDTPDNL---CTYQYNRDCKDEDGVKGRCVAGAINNYTTQL 88
WAD + WS++LHFID DN C Y RDC G G C AI NYT ++
Sbjct: 43 WADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC----GSSG-CSISAIANYTQRV 97
Query: 89 LSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 148
+ SS S N EAL FL HFIGD+ QPLH + GGN I+V + LH
Sbjct: 98 -----SDSSLSSENHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSD 151
Query: 149 WD--------------------NNIIETAEERFYNSNIDGLV--DAIQQNITTDWADLVK 186
WD +++ E Y + G + D I + ITT
Sbjct: 152 WDTYMPQKLIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITT-----AT 206
Query: 187 KWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVR 246
+W + AN C V G A + L Y++S + ++L++A+GG R
Sbjct: 207 RWAS-DANALVCT-VVMPHGAAAL---------QTGDLYPTYYDSVIDTIELQIAKGGYR 255
Query: 247 LAATLNRIFG 256
LA +N I G
Sbjct: 256 LANWINEIHG 265
>sp|P33376|PHLD_BACCE Phospholipase C OS=Bacillus cereus GN=cerA PE=3 SV=1
Length = 283
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 22/80 (27%)
Query: 47 ALHFIDTPDNLCTY-QYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTE 105
A HF D PDN TY Y + K E G K +AG S+ ++ +
Sbjct: 105 ASHFYD-PDNGKTYIPYAKQAK-ETGAKYFKLAG----------------ESYKNKDMKQ 146
Query: 106 ALLFLS---HFIGDIHQPLH 122
A +L H++GD++QP+H
Sbjct: 147 AFFYLGLSLHYLGDVNQPMH 166
>sp|C5DGT3|BLI1_LACTC Biogenesis of lysosome-related organelles complex 1 subunit BLI1
OS=Lachancea thermotolerans (strain ATCC 56472 / CBS
6340 / NRRL Y-8284) GN=BLI1 PE=3 SV=1
Length = 113
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 159 ERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGV 218
ER +I+G +D +Q+ + + A + +E+ + ++ C D G+KA + +
Sbjct: 9 ERVLRQHIEGCIDQVQEYVDLESAQAISSFESKAVDHFRCLD-----GLKAQYNTREDKI 63
Query: 219 SEGSVLEDEY 228
SE L+ EY
Sbjct: 64 SEFKRLQSEY 73
>sp|O75452|RDH16_HUMAN Retinol dehydrogenase 16 OS=Homo sapiens GN=RDH16 PE=1 SV=2
Length = 317
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 136 VHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDA-----IQQNITTDWADLVKKWET 190
+HWY +QVL H+ D + T + + + +DA + +T A+ ++ +T
Sbjct: 15 LHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAACLTEKGAEQLRG-QT 73
Query: 191 CSANNTACPDVYASEGIKAACDWA 214
T DV +E + AA W
Sbjct: 74 SDRLETVTLDVTKTESVAAAAQWV 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,246,359
Number of Sequences: 539616
Number of extensions: 4017687
Number of successful extensions: 9075
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9044
Number of HSP's gapped (non-prelim): 19
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)