Query 025227
Match_columns 256
No_of_seqs 132 out of 483
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 03:48:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02265 S1-P1_nuclease: S1/P1 100.0 2.8E-66 6E-71 453.0 11.1 236 2-256 11-252 (252)
2 smart00770 Zn_dep_PLPC Zinc de 94.7 0.036 7.9E-07 48.1 3.9 79 27-124 72-154 (241)
3 KOG3189 Phosphomannomutase [Li 69.5 2.6 5.6E-05 35.7 1.4 40 99-148 190-236 (252)
4 PF10815 ComZ: ComZ; InterPro 59.8 5.2 0.00011 26.3 1.1 17 1-18 7-23 (56)
5 PF13758 Prefoldin_3: Prefoldi 24.8 61 0.0013 24.3 2.1 22 227-248 78-99 (99)
6 PF13936 HTH_38: Helix-turn-he 24.2 29 0.00063 21.5 0.3 26 5-32 2-27 (44)
7 PF03474 DMA: DMRTA motif; In 22.2 68 0.0015 19.7 1.6 11 74-84 28-38 (39)
8 PF00882 Zn_dep_PLPC: Zinc dep 22.2 78 0.0017 24.7 2.5 45 102-155 81-125 (163)
9 PHA01365 hypothetical protein 22.1 36 0.00079 24.3 0.4 11 108-118 80-90 (91)
10 PF06370 DUF1069: Protein of u 21.2 57 0.0012 25.9 1.4 27 110-136 112-143 (206)
11 COG0158 Fbp Fructose-1,6-bisph 20.8 45 0.00097 30.2 0.8 40 79-124 211-250 (326)
No 1
>PF02265 S1-P1_nuclease: S1/P1 Nuclease; InterPro: IPR003154 This family contains both S1 and P1 nucleases (3.1.30.1 from EC) which cleave RNA and single stranded DNA with no base specificity. ; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006308 DNA catabolic process; PDB: 1AK0_A.
Probab=100.00 E-value=2.8e-66 Score=452.95 Aligned_cols=236 Identities=38% Similarity=0.698 Sum_probs=182.5
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc---cCCCCCccccccCCC--CCCCcccCCCCccCCCCCCCc
Q 025227 2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF---HYHWSSALHFIDTPD--NLCTYQYNRDCKDEDGVKGRC 76 (256)
Q Consensus 2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~---~~~~~~~wHy~~~p~--~~~~~~~~~dc~~~~~~~~~c 76 (256)
+||+++|+|++++.|++||+.....+|+++|+|||+||+ +++++++|||+|+|. ..|++.+..+| ++++|
T Consensus 11 ~iA~~~L~~~~~~~v~~il~~~~~~~l~~~A~WaD~ir~~~~~~~~~~~wHyi~~~~~~~~~~~~~~~~~-----~~~~~ 85 (252)
T PF02265_consen 11 EIAQRHLSPEARKKVDKILGGDSSESLAEAATWADDIRSDPAQYKWTAPWHYINQPDNKYPRDFQPARDC-----PNGGC 85 (252)
T ss_dssp HHHHHHS-HHHHHHHHHHHT--STTTTGGGTTHHHHHHT-STTTGGGGGGG------BTTB----HHHHS------TT--
T ss_pred HHHHHHCCHHHHHHHHHHhCccccccHHHHHHhHHHhhccccccCcCCCccccCCccccccccccccccC-----CCCCc
Confidence 699999999999999999996556899999999999998 579999999999998 45566555778 56999
Q ss_pred HHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCc-ccCCCCCCCCceEEEecCccCCchhhhhhhhHh
Q 025227 77 VAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLH-VGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIE 155 (256)
Q Consensus 77 vv~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH-~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~ 155 (256)
|+++|.+++++|++.+.+ .++++++|||||||||||||||| ++++||+|||+++|+|+|+++|||+|||++|++
T Consensus 86 ~~~ai~~~~~~L~~~~~~-----~~~~~~aL~~LvH~vGDiHQPLH~~~~~~D~GGN~~~v~~~g~~~nLH~~WD~~l~~ 160 (252)
T PF02265_consen 86 VVSAIKNYTSRLKDTSTS-----KAERAFALKFLVHLVGDIHQPLHTVGRKGDRGGNDIKVKFNGKKTNLHSVWDSGLIN 160 (252)
T ss_dssp HHHHHHHHHHHHT-TTS------HHHHHHHHHHHHHHHHHTTSGGGG--H--HHHTTT-EEEETTEEEEHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHhccCCC-----cHHHHHHHHHHHHHhhhccCccccccccccCCCCeeEEEecCCcCcHHHHHHHHHHH
Confidence 999999999999998766 44899999999999999999999 678999999999999999999999999999998
Q ss_pred HHHHhccCCCHHHHHHHHHHhhhhhhHHHHHhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHhchHHH
Q 025227 156 TAEERFYNSNIDGLVDAIQQNITTDWADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPI 235 (256)
Q Consensus 156 ~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~~~~~~ 235 (256)
+.....+..++.++++.|.+.++. +..+.|.+ .+|.+|+.||++++|+++|+.+..+.+|+++|+.+++++
T Consensus 161 ~~~~~~~~~~~~~~a~~L~~~~~~---~~~~~~~~------~~~~~Wa~ES~~la~~~~y~~~~~~~~l~~~Y~~~~~~~ 231 (252)
T PF02265_consen 161 YMIKNKYQSSWQEYADELDRKITK---ESFKSWQP------GDPEDWANESHELACNIVYPGIKNGTELSDEYYTKARPV 231 (252)
T ss_dssp HHHS--SHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHHHHHHHHTTSTT-SGGGS-TTHHHHHHHHH
T ss_pred hhccccchhhHHHHHHHHHhhccc---hhhhhhhh------hhHHHHHHHHHHHHHHHHhccCCCCCccCHHHHHHHHHH
Confidence 765433333466788888766653 45566754 489999999999999999988888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 025227 236 VKLRLAQGGVRLAATLNRIFG 256 (256)
Q Consensus 236 ~~~ql~~AG~RLA~~Ln~i~~ 256 (256)
+++||++||+|||.+||+||+
T Consensus 232 ~~~ql~~AG~RLA~~Ln~i~~ 252 (252)
T PF02265_consen 232 AEEQLAKAGYRLAAVLNEIFD 252 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999985
No 2
>smart00770 Zn_dep_PLPC Zinc dependent phospholipase C (alpha toxin). This domain conveys a zinc dependent phospholipase C activity (EC 3.1.4.3). It is found in a monomeric phospholipase C of Bacillus cereus as well as in the alpha toxin of Clostridium perfringens and Clostridium bifermentans, which is involved in haemolysis and cell rupture. It is also found in a lecithinase of Listeria monocytogenes, which is involved in breaking the 2-membrane vacuoles that surround the bacterium. Structure information: PDB 1ca1.
Probab=94.73 E-value=0.036 Score=48.14 Aligned_cols=79 Identities=23% Similarity=0.183 Sum_probs=46.1
Q ss_pred ChhhhccccccccccCCCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHHHHHHHHHHh----ccCCCCCCCccccc
Q 025227 27 DLGSVCTWADHVKFHYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQL----LSYNSASSSHSEYN 102 (256)
Q Consensus 27 ~~~~~a~WaD~ik~~~~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~ai~~~~~~L----~~~~~~~~~~~~~~ 102 (256)
.|..-.+|||.-...+.. ..+||.|...+ .+|-+ ...........+...- +.+... .
T Consensus 72 ~l~~G~~~aD~~~~~~~~-~~~HFydp~~~-~~yL~----------~~~~A~~~~~ky~~~A~~~~~~g~~~-------~ 132 (241)
T smart00770 72 ELKLGSTYADYDNKYYDL-SQDHFYDPDTG-KNYLP----------GFSNAKDTGRKYFKLALNEWKKGNYK-------K 132 (241)
T ss_pred HHHcCCcccccCcccccc-ccccccCCCCC-CCCCC----------CCCcHHHHHHHHHHHHHHHHHcCCHH-------H
Confidence 577778899986654442 37799985332 23211 1122333333333322 222211 2
Q ss_pred HHHHHHHHHHHhhcCCCCCccc
Q 025227 103 LTEALLFLSHFIGDIHQPLHVG 124 (256)
Q Consensus 103 ~~~aLk~LiHlvGDiHQPLH~~ 124 (256)
--+.|-.-+|+++|+-||+|++
T Consensus 133 A~~~LG~a~Hy~~D~~~P~Ha~ 154 (241)
T smart00770 133 AFFYLGRACHYLGDLSTPYHAN 154 (241)
T ss_pred HHHHHHHHHHHHHhcCCccccc
Confidence 3466888899999999999986
No 3
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=69.52 E-value=2.6 Score=35.75 Aligned_cols=40 Identities=33% Similarity=0.592 Sum_probs=28.9
Q ss_pred ccccHHHHHHHH-------HHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhh
Q 025227 99 SEYNLTEALLFL-------SHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHV 148 (256)
Q Consensus 99 ~~~~~~~aLk~L-------iHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~v 148 (256)
.-|.+.++|+.| |||+||.-.| |||++.+ |....+-=|+|
T Consensus 190 ~GWDKtyCLqhle~dgf~~IhFFGDkT~~---------GGNDyEI-f~dprtiGhsV 236 (252)
T KOG3189|consen 190 KGWDKTYCLQHLEKDGFDTIHFFGDKTMP---------GGNDYEI-FADPRTIGHSV 236 (252)
T ss_pred CCcchhHHHHHhhhcCCceEEEeccccCC---------CCCccee-eeCCccccccc
Confidence 479999999987 5777776555 8999999 44444444554
No 4
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=59.76 E-value=5.2 Score=26.30 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=13.9
Q ss_pred ChhhhhcCCHHHHHHHHh
Q 025227 1 MLCFQSRLREAAADAVKQ 18 (256)
Q Consensus 1 ~~IA~~~Lt~~a~~~v~~ 18 (256)
|+||.+|| |++++.+++
T Consensus 7 mqIaMK~l-PEak~~L~k 23 (56)
T PF10815_consen 7 MQIAMKYL-PEAKEELDK 23 (56)
T ss_pred HHHHHHHh-HHHHHHHHH
Confidence 68999999 678888776
No 5
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=24.82 E-value=61 Score=24.25 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=20.3
Q ss_pred HHHhchHHHHHHHHHHHHHHHH
Q 025227 227 EYFNSRLPIVKLRLAQGGVRLA 248 (256)
Q Consensus 227 ~Y~~~~~~~~~~ql~~AG~RLA 248 (256)
+|+.++...+++||..|=-|||
T Consensus 78 DYV~~Ni~tleKql~~aE~kla 99 (99)
T PF13758_consen 78 DYVQQNIETLEKQLEAAENKLA 99 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999988876
No 6
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=24.19 E-value=29 Score=21.52 Aligned_cols=26 Identities=12% Similarity=0.271 Sum_probs=9.4
Q ss_pred hhcCCHHHHHHHHhhCCCCCCCChhhhc
Q 025227 5 QSRLREAAADAVKQLLPESADNDLGSVC 32 (256)
Q Consensus 5 ~~~Lt~~a~~~v~~lL~~~~~~~~~~~a 32 (256)
+.+||++.+..|..++.. |.++.++|
T Consensus 2 ~~~Lt~~eR~~I~~l~~~--G~s~~~IA 27 (44)
T PF13936_consen 2 YKHLTPEERNQIEALLEQ--GMSIREIA 27 (44)
T ss_dssp ----------HHHHHHCS-----HHHHH
T ss_pred ccchhhhHHHHHHHHHHc--CCCHHHHH
Confidence 468999999999999863 55666555
No 7
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=22.24 E-value=68 Score=19.73 Aligned_cols=11 Identities=27% Similarity=0.359 Sum_probs=9.5
Q ss_pred CCcHHHHHHHH
Q 025227 74 GRCVAGAINNY 84 (256)
Q Consensus 74 ~~cvv~ai~~~ 84 (256)
+|+|+.||+.+
T Consensus 28 ~GDvv~AIE~~ 38 (39)
T PF03474_consen 28 NGDVVQAIEQF 38 (39)
T ss_pred CCcHHHHHHHh
Confidence 89999999764
No 8
>PF00882 Zn_dep_PLPC: Zinc dependent phospholipase C; InterPro: IPR001531 Bacillus cereus contains a monomeric phospholipase C 3.1.4.3 from EC (PLC) of 245 amino-acid residues that binds three zinc ions []. Although PLC prefers to act on phosphatidylcholine, it also shows weak catalytic activity with sphingomyelin and phosphatidylinositol []. Sequence studies have shown the PLC protein to be similar to the following: Alpha toxin from Clostridium perfringens and Clostridium bifermentans, which are zinc-dependent phospholipases C involved in haemolysis and cell rupture []. Lecithinase C from Listeria monocytogenes, which aids cell-to-cell spread by breaking down the 2-membrane vacuoles that surround the bacterium during transfer []. Each of these proteins is a zinc-dependent enzyme, binding 3 zinc ions per molecule []. The enzymes catalyse the conversion of phosphatidylcholine and water to 1,2-diacylglycerol and choline phosphate [, , ]. In B. cereus, there are nine residues known to be involved in binding the zinc ions: 5 His, 2 Asp, 1 Glu and 1 Trp. These residues are all conserved in the Clostridium alpha-toxin [].; GO: 0004629 phospholipase C activity, 0008270 zinc ion binding; PDB: 2WXU_A 1QMD_A 2WY6_C 1QM6_B 2WXT_A 1KHO_B 1P6E_A 2HUC_A 1P5X_A 2FFZ_A ....
Probab=22.22 E-value=78 Score=24.67 Aligned_cols=45 Identities=18% Similarity=0.277 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHh
Q 025227 102 NLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIE 155 (256)
Q Consensus 102 ~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~ 155 (256)
..++.|-++.|++.|.-. |..+... + ...+....-|...++.+..
T Consensus 81 ~~a~~lG~~~H~~~D~~~--H~~~~~~---~----~~~~~~~~~H~~~E~~ld~ 125 (163)
T PF00882_consen 81 EAAFLLGYLCHYIADSFC--HPVPANH---N----KIFSGNLLQHRYYETYLDS 125 (163)
T ss_dssp HHHHHHHHHHHHHHHHTS--H---HTT---T----TTTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH--hcccccc---c----cccccchHHHHHHHHHHHH
Confidence 688999999999999999 8100000 0 0223355779999987553
No 9
>PHA01365 hypothetical protein
Probab=22.08 E-value=36 Score=24.32 Aligned_cols=11 Identities=27% Similarity=0.930 Sum_probs=8.5
Q ss_pred HHHHHHhhcCC
Q 025227 108 LFLSHFIGDIH 118 (256)
Q Consensus 108 k~LiHlvGDiH 118 (256)
-+|.|||||+.
T Consensus 80 FYLahLVGeLN 90 (91)
T PHA01365 80 FYLALLVGDLN 90 (91)
T ss_pred eeHHhhhhhcc
Confidence 36889999973
No 10
>PF06370 DUF1069: Protein of unknown function (DUF1069); InterPro: IPR009421 This family consists of several Maize streak virus 21.7 kDa proteins. The function of this family is unknown.
Probab=21.15 E-value=57 Score=25.85 Aligned_cols=27 Identities=44% Similarity=0.460 Sum_probs=17.0
Q ss_pred HHHHhhcCCCCCcccC-----CCCCCCCceEE
Q 025227 110 LSHFIGDIHQPLHVGF-----TSDRGGNTIDV 136 (256)
Q Consensus 110 LiHlvGDiHQPLH~~~-----~~D~GGN~~~V 136 (256)
|..--|=||||-|++. .|=+=.|.+-|
T Consensus 112 lsagsgvihqphhtgsgvgvpagcrvsnevvv 143 (206)
T PF06370_consen 112 LSAGSGVIHQPHHTGSGVGVPAGCRVSNEVVV 143 (206)
T ss_pred cccCCcceecCcccCCcccccccceecceEEE
Confidence 3445678999999973 34444455444
No 11
>COG0158 Fbp Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=20.84 E-value=45 Score=30.18 Aligned_cols=40 Identities=13% Similarity=0.373 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCccc
Q 025227 79 GAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVG 124 (256)
Q Consensus 79 ~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~ 124 (256)
.+++.|++.+...+... -|.+.+||+--+|+|+|+=|=-|
T Consensus 211 ~~v~~yI~~~~~~~~~~------~r~y~~RyigSmVADvHRiL~~G 250 (326)
T COG0158 211 EGVKKYIKDCFAEDKGT------RRPYNMRYIGSMVADVHRILLKG 250 (326)
T ss_pred HHHHHHHHHHhccCCCc------CCCcchhhHHHHHHHHHHHHHcC
Confidence 67888888887765332 27899999999999999988543
Done!