Query 025227
Match_columns 256
No_of_seqs 132 out of 483
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 06:11:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sng_A Nuclease; mainly alpha 100.0 1.1E-75 3.6E-80 516.7 16.6 253 2-256 11-266 (277)
2 1ak0_A P1 nuclease; endonuclea 100.0 1.6E-68 5.4E-73 470.4 13.7 244 2-256 11-265 (270)
3 1ah7_A Phospholipase C; phosph 100.0 3.3E-41 1.1E-45 292.5 9.6 179 28-256 47-240 (245)
4 2wxu_A Phospholipase C; cytoly 93.3 0.29 9.9E-06 43.9 8.4 118 102-255 116-240 (370)
5 1olp_A Alpha-toxin; zinc phosp 90.9 0.26 8.8E-06 44.3 5.0 117 103-255 117-240 (370)
6 1y71_A Kinase-associated prote 12.0 47 0.0016 24.9 0.0 12 198-209 109-120 (130)
7 3k67_A Putative dehydratase AF 11.3 98 0.0034 23.7 1.7 19 105-124 51-69 (159)
8 3luu_A Uncharacterized protein 11.0 92 0.0031 21.8 1.3 33 115-149 4-37 (101)
9 2b7e_A PRE-mRNA processing pro 10.7 3E+02 0.01 17.5 3.6 30 79-112 4-34 (59)
10 1bh9_A TAFII18; histone fold, 9.9 1.5E+02 0.0052 17.7 1.8 17 107-123 6-22 (45)
No 1
>3sng_A Nuclease; mainly alpha helical, trinuclear metal centre, 3'-nucleotidase, nucleic acids, mononucleotid cytosol membrane associated; HET: NAG BMA MAN BTB; 2.16A {Solanum lycopersicum} PDB: 4dj4_A*
Probab=100.00 E-value=1.1e-75 Score=516.71 Aligned_cols=253 Identities=54% Similarity=1.028 Sum_probs=229.3
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc--cCCCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHH
Q 025227 2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAG 79 (256)
Q Consensus 2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~--~~~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~ 79 (256)
+||+++|+|++++.|++||+.+.+.+|+++|+|||+||+ .++|+++|||+|+|++.|++++.+||++..+++++||++
T Consensus 11 ~IA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~p~~~c~~~~~rdc~~~~~~~~~cvv~ 90 (277)
T 3sng_A 11 RIAQGLLNDEAAHAVKMLLPEYVNGDLSALCVWPDQVRHWYKYKWTSPLHFIDTPDKACNFDYERDCHDQHGVKDMCVAG 90 (277)
T ss_dssp HHHHTTCCHHHHHHHHHHSCGGGTTCGGGTTTHHHHHTTSGGGGGGGGGGCCCBCTTTCCCCHHHHCBCTTCCBTCSHHH
T ss_pred HHHHHHCCHHHHHHHHHHhCcccccCHHHHhhhHhhhcccccccccCcceeecCCCCcCCCcccCCcccccCCCcchHHH
Confidence 699999999999999999997778899999999999996 789999999999999999999999997655567999999
Q ss_pred HHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhHHHH
Q 025227 80 AINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEE 159 (256)
Q Consensus 80 ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~ 159 (256)
||.+++++|++.+.... .+.+++++|||||||||||||||||+++.+|+|||+|+|.|+|+++|||+|||++|+++..+
T Consensus 91 aI~~~t~~L~~~~~~~~-~~~~~~~~aLkfLvHfvGDiHQPLH~g~~~D~GGN~i~V~~~g~~~NLH~vWDs~ii~~~~~ 169 (277)
T 3sng_A 91 AIQNFTTQLSHYREGTS-DRRYNMTEALLFLSHFMGDIHQPMHVGFTSDAGGNSIDLRWFRHKSNLHHVWDREIILTAAK 169 (277)
T ss_dssp HHHHHHHHHTTTTTCCC-CTTCCHHHHHHHHHHHHHHHHSGGGGCBTTTTTTTTCEEEETTEEEEHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHcCCCCccc-CChHHHHHHHHHHHHHhccccCCccCCCCcCCCCCeEEEEECCccCchHHHHHhhhhhhhhc
Confidence 99999999998751000 01458999999999999999999999999999999999999999999999999999998777
Q ss_pred hccCCCHHHHHHHHHHhhhhh-hHHHHHhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHhchHHHHHH
Q 025227 160 RFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFNSRLPIVKL 238 (256)
Q Consensus 160 ~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~~~~~~~~~ 238 (256)
.++..++.+|++.|.+.|+.+ |+++.++|..|.+ ...||.+|+.||+++||++||+..++|.+|+++|+.++.|++|+
T Consensus 170 ~~~~~~~~~~a~~L~~~i~~~~~~~~~~~w~~~~~-~~~~~~~Wa~ES~~la~~~vY~~~~~~~~L~~~Y~~~~~~i~e~ 248 (277)
T 3sng_A 170 DYYAKDINLLEEDIEGNFTDGIWSDDLASWRECGN-VFSCVNKFATESINIACKWGYKGVEAGETLSDDYFNSRLPIVMK 248 (277)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTTTHHHHHCCCS-HHHHHHHHHHHHHHHHHHTTSTTCCTTCEECHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHhhcccchhHHHHHhhccc-ccCCHHHHHHHHHHHHHHHhccCCCCCCccCHHHHHHHHHHHHH
Confidence 777778899999998888875 8888889988753 56799999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 025227 239 RLAQGGVRLAATLNRIFG 256 (256)
Q Consensus 239 ql~~AG~RLA~~Ln~i~~ 256 (256)
||++||||||.+||.||+
T Consensus 249 qla~aG~RLA~~LN~i~~ 266 (277)
T 3sng_A 249 RVAQGGIRLAMLLNNVFG 266 (277)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999999985
No 2
>1ak0_A P1 nuclease; endonuclease, reaction mechanism, thiophosphory oligonucleotides, glycosylated protein; HET: NAG ADS THS; 1.80A {Penicillium citrinum} SCOP: a.124.1.2
Probab=100.00 E-value=1.6e-68 Score=470.40 Aligned_cols=244 Identities=30% Similarity=0.488 Sum_probs=214.5
Q ss_pred hhhhhcCCHHHHHHHHhhCCCCCCCChhhhccccccccc--cCCCCCccccccCC---CCCCCcccCCCCccCCCCCCCc
Q 025227 2 LCFQSRLREAAADAVKQLLPESADNDLGSVCTWADHVKF--HYHWSSALHFIDTP---DNLCTYQYNRDCKDEDGVKGRC 76 (256)
Q Consensus 2 ~IA~~~Lt~~a~~~v~~lL~~~~~~~~~~~a~WaD~ik~--~~~~~~~wHy~~~p---~~~~~~~~~~dc~~~~~~~~~c 76 (256)
+||+++|+|++++.|++||+.....+|+++|+|||+||+ .++|+++|||+|+| ...|++++.+|| ++++|
T Consensus 11 ~iA~~~L~~~~~~~v~~lL~~~~~~~l~~~a~WaD~ir~~~~~~~~~~wHyid~~~~p~~~c~~~~~rdc-----~~~~c 85 (270)
T 1ak0_A 11 YVAQHYVSPEAASWAQGILGSSSSSYLASIASWADEYRLTSAGKWSASLHFIDAEDNPPTNCNVDYERDC-----GSSGC 85 (270)
T ss_dssp HHHHHHSCHHHHHHHHHHHTCCSTTTTGGGTTHHHHHHTSTTTGGGGGGGCCCCCCBTTTBCCCCHHHHS-----CTTCC
T ss_pred HHHHHHCCHHHHHHHHHHhCCCCcccHHHHccchhhcccCCCCCccccccCCCCcCCCCcCCCCcccCCC-----CCccc
Confidence 699999999999999999997656679999999999997 57999999999996 456999889999 45899
Q ss_pred HHHHHHHHHHHhccCCCCCCCcccccHHHHHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhH
Q 025227 77 VAGAINNYTTQLLSYNSASSSHSEYNLTEALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIET 156 (256)
Q Consensus 77 vv~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~ 156 (256)
|+++|++++++|++.+.+ .+++++|||||||||||||||||++ .+|+|||+|+|.|+|+++|||+|||++|+++
T Consensus 86 v~~ai~~~~~~L~~~~~s-----~~~~~~aL~fLvH~vGDiHQPLH~~-~~D~GGN~i~V~~~g~~~nLH~vWDs~i~~~ 159 (270)
T 1ak0_A 86 SISAIANYTQRVSDSSLS-----SENHAEALRFLVHFIGDMTQPLHDE-AYAVGGNKINVTFDGYHDNLHSDWDTYMPQK 159 (270)
T ss_dssp HHHHHHHHHHHHTCTTSC-----HHHHHHHHHHHHHHHHHTTSGGGGC-CHHHHTTTCEEEETTEEEEHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHHHcccccCcccCc-CcCCCCCeEEEEECCccCccHHHHhccchhh
Confidence 999999999999997765 5689999999999999999999999 6899999999999999999999999999987
Q ss_pred HHHhccCCCHHHHHHHHHHhhhhh-hHHHHHhhhhccC--CCCCChHHHHHHHHHHHHhhhcCCC---CCCCCCCHHHHh
Q 025227 157 AEERFYNSNIDGLVDAIQQNITTD-WADLVKKWETCSA--NNTACPDVYASEGIKAACDWAYKGV---SEGSVLEDEYFN 230 (256)
Q Consensus 157 ~~~~~~~~~~~~~~~~l~~~i~~~-~~~~~~~w~~~~~--~~~~~~~~Wa~Es~~~a~~~vY~~~---~~~~~l~~~Y~~ 230 (256)
..+.++..+...|++.|.+.++.+ |+++.+.|..|.. +...||.+|+.||++++|+.||+.. .++.+|+++|+.
T Consensus 160 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~wa~ES~~la~~~vY~~~~~~~~~~~l~~~Y~~ 239 (270)
T 1ak0_A 160 LIGGHALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHGAAALQTGDLYPTYYD 239 (270)
T ss_dssp HHSCCSHHHHHHHHHHHHHHHHHSTTHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTTSTTCSGGGSSSBCTTHHHH
T ss_pred hccccCcchHHHHHHHHHHhcccCCCchhHHHhhcCccccccccCHHHHHHHHHHHHHHHhcccCcccccCCCCCHHHHH
Confidence 655544334667888887777766 8888889987632 3356899999999999999999753 346789999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHhhC
Q 025227 231 SRLPIVKLRLAQGGVRLAATLNRIFG 256 (256)
Q Consensus 231 ~~~~~~~~ql~~AG~RLA~~Ln~i~~ 256 (256)
+++|++++||++||+|||.+||.||+
T Consensus 240 ~~~~v~e~qla~aG~RLA~~Ln~i~~ 265 (270)
T 1ak0_A 240 SVIDTIELQIAKGGYRLANWINEIHG 265 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999984
No 3
>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A
Probab=100.00 E-value=3.3e-41 Score=292.48 Aligned_cols=179 Identities=19% Similarity=0.243 Sum_probs=137.7
Q ss_pred hhhhccccccccc-cC-CCCCccccccCCCCCCCcccCCCCccCCCCCCCcHHHHHHHHHHHhccCCCCCCCcccccHHH
Q 025227 28 LGSVCTWADHVKF-HY-HWSSALHFIDTPDNLCTYQYNRDCKDEDGVKGRCVAGAINNYTTQLLSYNSASSSHSEYNLTE 105 (256)
Q Consensus 28 ~~~~a~WaD~ik~-~~-~~~~~wHy~~~p~~~~~~~~~~dc~~~~~~~~~cvv~ai~~~~~~L~~~~~~~~~~~~~~~~~ 105 (256)
|...|+|||+ |. .+ +++++|||+|+|.+ |++.+.++|. .+|++.+|.++++.|++.+ ..++.+
T Consensus 47 i~~~~~w~D~-k~~~~~~~~~~~Hy~d~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~-------~~~~~~ 111 (245)
T 1ah7_A 47 LENGIYAADY-ENPYYDNSTFASHFYDPDNG-KTYIPFAKQA------KETGAKYFKLAGESYKNKD-------MKQAFF 111 (245)
T ss_dssp HHHHHHHTTT-STTTTTTTTCGGGCCBTTTT-BCSSTTCCCH------HHHHHHHHHHHHHHHHTTC-------HHHHHH
T ss_pred HHhcCcCCCc-ccccccccCCCcccccCCCC-CCCCCCCCCc------chHHHHHHHHHHHHHHcCC-------HHHHHH
Confidence 4445556666 53 23 78999999999875 9988888994 3499999999999999865 237899
Q ss_pred HHHHHHHHhhcCCCCCcccCCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhhhHHHH
Q 025227 106 ALLFLSHFIGDIHQPLHVGFTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTDWADLV 185 (256)
Q Consensus 106 aLk~LiHlvGDiHQPLH~~~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 185 (256)
+|+||+||||||||||| |||.+. +|+.+|||++|| .+++..... +.. ... .+.
T Consensus 112 aL~~l~H~vGDiHQPlH-------~gn~~~---~~~~~nlH~~WD-~~i~~~~~~-y~~------------~~~---~~~ 164 (245)
T 1ah7_A 112 YLGLSLHYLGDVNQPMH-------AANFTN---LSYPQGFHSKYE-NFVDTIKDN-YKV------------TDG---NGY 164 (245)
T ss_dssp HHHHHHHHHHHHTSTTT-------TTTCCT---TSSSTTHHHHHH-HHHHHHGGG-GCC------------CSS---CCC
T ss_pred HHHHHHHHHHhcCCCCC-------CCcccc---CCCCCCchHHHH-HHHHHHhhc-ccc------------cch---HHH
Confidence 99999999999999999 677776 578899999999 788653221 111 000 111
Q ss_pred HhhhhccCCCCCChHHHHHHHHHHHHhhhcCCCCCCCCCCHHHHh---------c----hHHHHHHHHHHHHHHHHHHHH
Q 025227 186 KKWETCSANNTACPDVYASEGIKAACDWAYKGVSEGSVLEDEYFN---------S----RLPIVKLRLAQGGVRLAATLN 252 (256)
Q Consensus 186 ~~w~~~~~~~~~~~~~Wa~Es~~~a~~~vY~~~~~~~~l~~~Y~~---------~----~~~~~~~ql~~AG~RLA~~Ln 252 (256)
..|. ..||.+|+.||+++ |..+|+.+..+.. +.+|+. + ++|++++||++||+|||.+||
T Consensus 165 ~~~~------~~~~~~W~~Es~~~-a~~~Y~~~~~~~~-~~~Y~~~~~~~~~~~~~~~~~~~v~~~qL~~aG~RLA~~Ln 236 (245)
T 1ah7_A 165 WNWK------GTNPEEWIHGAAVV-AKQDYSGIVNDNT-KDWFVKAAVSQEYADKWRAEVTPMTGKRLMDAQRVTAGYIQ 236 (245)
T ss_dssp TTCS------CSCHHHHHHHHHHH-HHHTGGGTSSHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh------cCCHHHHHHHHHHH-HHHHhccccCCCc-ccchhhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2232 36999999999999 6679987655544 566763 5 999999999999999999999
Q ss_pred HhhC
Q 025227 253 RIFG 256 (256)
Q Consensus 253 ~i~~ 256 (256)
.||+
T Consensus 237 ~i~~ 240 (245)
T 1ah7_A 237 LWFD 240 (245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9983
No 4
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=93.35 E-value=0.29 Score=43.93 Aligned_cols=118 Identities=21% Similarity=0.241 Sum_probs=62.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCccc--CCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhh
Q 025227 102 NLTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITT 179 (256)
Q Consensus 102 ~~~~aLk~LiHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 179 (256)
.-.+.|-..+|+|+|+.||+|+. ..-|.+| |+..+.-+.... ..+...+ ... ....
T Consensus 116 ~A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~g--------------H~~fE~~V~~~~-~~y~~~t-~g~------~~~~ 173 (370)
T 2wxu_A 116 QATFYLGEAMHYFGDIDTPYHPANVTAVDSAG--------------HVKFETFAEERK-EQYKINT-AGC------KTNE 173 (370)
T ss_dssp HHHHHHHHHHHHHHHHTSSTTTTTCCTTTCTH--------------HHHHHHHHHHHG-GGGCCSC-CSS------CTTS
T ss_pred HHHHHHHHHHHHhhcCCCCcccccccccCCcC--------------HHHHHHHHHHhh-hheeecc-CCc------cccc
Confidence 34688999999999999999995 1112221 777777544321 1111000 000 0000
Q ss_pred h-hHHHHHhhhhccCCCCCChHHHHHHHHHH----HHhhhcCCCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHh
Q 025227 180 D-WADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRI 254 (256)
Q Consensus 180 ~-~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~----a~~~vY~~~~~~~~l~~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i 254 (256)
. |.+. + ...++.+|+.|.... |.+.-|+... ......+| ..+++.+|..|=..+|..|-..
T Consensus 174 ~~y~~~---~------~~~~~~~Wv~e~ak~~Ak~a~~~Y~~~~~-~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f 239 (370)
T 2wxu_A 174 AFYTDI---L------KNKDFNAWSKEYARGFAKTGKSIYYSHAS-MSHSWDDW----DYAAKVTLANSQKGTAGYIYRF 239 (370)
T ss_dssp HHHHHH---H------HCSCHHHHHHHHHHHHHHHHHHHHHHTTS-TTSCHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecc---c------ccCCHHHHHHHHHHHHHHHHHHHHHhhcc-ccCcHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1110 1 125788899887774 5542233221 11233455 5566677777777777777654
Q ss_pred h
Q 025227 255 F 255 (256)
Q Consensus 255 ~ 255 (256)
|
T Consensus 240 ~ 240 (370)
T 2wxu_A 240 L 240 (370)
T ss_dssp H
T ss_pred H
Confidence 3
No 5
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=90.93 E-value=0.26 Score=44.26 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhhcCCCCCccc--CCCCCCCCceEEEecCccCCchhhhhhhhHhHHHHhccCCCHHHHHHHHHHhhhhh
Q 025227 103 LTEALLFLSHFIGDIHQPLHVG--FTSDRGGNTIDVHWYTRKQVLHHVWDNNIIETAEERFYNSNIDGLVDAIQQNITTD 180 (256)
Q Consensus 103 ~~~aLk~LiHlvGDiHQPLH~~--~~~D~GGN~~~V~~~g~~~nLH~vWDs~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 180 (256)
-.+.|-..+|+|+|+.||+|+. ..-|.+ -|+..+.-+.... ..+...+ .. ......
T Consensus 117 A~~~LG~a~Hy~~D~~~P~Ha~n~t~~~~~--------------gH~~yE~~V~~~~-~~y~i~t-~g------~~~~~~ 174 (370)
T 1olp_A 117 AAWYLGQGMHYFGDLNTPYHAANVTAVDSP--------------GHVKFETYAEERK-DTYRLDT-TG------YNTDDA 174 (370)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHTTCCTTTCH--------------HHHHHHHHHHHHG-GGGCCSC-CS------SCTTSH
T ss_pred HHHHHHHHHHHhhcCCCCcccccccccCCc--------------CHHHHHHHHHHhh-hheeecc-CC------cccccc
Confidence 4688999999999999999995 111111 1776666544321 1110000 00 000000
Q ss_pred -hHHHHHhhhhccCCCCCChHHHHHHHHHH----HHhhhcCCCCCCCCCCHHHHhchHHHHHHHHHHHHHHHHHHHHHhh
Q 025227 181 -WADLVKKWETCSANNTACPDVYASEGIKA----ACDWAYKGVSEGSVLEDEYFNSRLPIVKLRLAQGGVRLAATLNRIF 255 (256)
Q Consensus 181 -~~~~~~~w~~~~~~~~~~~~~Wa~Es~~~----a~~~vY~~~~~~~~l~~~Y~~~~~~~~~~ql~~AG~RLA~~Ln~i~ 255 (256)
|.+ . ....++.+|+.|.... |.+ .|-..........+| ..+++++|..|=..+|..|-..|
T Consensus 175 ~y~~---~------~~~~~~~~Wi~e~a~~~Ak~a~~-~Y~~~~~~~~~~~~~----~~~a~~~L~~AQ~~TAGfl~~f~ 240 (370)
T 1olp_A 175 FYKD---T------LKNDNFNEWSKGYCKYWAKKAKN-LYYSHATMSNSWDDW----EYAASHGVGNAQKGVAGYLYRFL 240 (370)
T ss_dssp HHHG---G------GSCSCHHHHHHHHHHHHHHHHHH-HHHHHCSTTSCHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeec---c------cccCCHHHHHHHHHHHHHHHHHH-HHHhcccccCcHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 1235788999987764 433 332101111223344 56777888888888888876554
No 6
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=12.00 E-value=47 Score=24.91 Aligned_cols=12 Identities=8% Similarity=0.221 Sum_probs=8.4
Q ss_pred ChHHHHHHHHHH
Q 025227 198 CPDVYASEGIKA 209 (256)
Q Consensus 198 ~~~~Wa~Es~~~ 209 (256)
.-..||.-|.+.
T Consensus 109 ~~s~~A~~sL~~ 120 (130)
T 1y71_A 109 DDSPFAERSLET 120 (130)
T ss_dssp CCSHHHHHHHHH
T ss_pred cCcHHHHHHHHH
Confidence 446888877764
No 7
>3k67_A Putative dehydratase AF1124; hypothetical protein AF1124, structural genomics, PSI, protein structure initiative; 1.25A {Archaeoglobus fulgidus} PDB: 2b3m_A
Probab=11.26 E-value=98 Score=23.66 Aligned_cols=19 Identities=21% Similarity=0.433 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcCCCCCccc
Q 025227 105 EALLFLSHFIGDIHQPLHVG 124 (256)
Q Consensus 105 ~aLk~LiHlvGDiHQPLH~~ 124 (256)
.-+..+..+.|| ++|+|+.
T Consensus 51 ~di~~FA~~sGD-~nPiH~D 69 (159)
T 3k67_A 51 IDVAMFGLISGD-LNPVHFD 69 (159)
T ss_dssp HHHHHHHHHHCC-CCGGGTC
T ss_pred HHHHHHHHHHCC-CCccccC
Confidence 346677889999 7899985
No 8
>3luu_A Uncharacterized protein; AFE_2189, PFAM DUF971 family, structural genomics, joint CEN structural genomics, JCSG; HET: MSE; 1.93A {Acidithiobacillus ferrooxidans}
Probab=10.96 E-value=92 Score=21.84 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.9
Q ss_pred hcCCCCCcccCCCCCCCCceEEEe-cCccCCchhhh
Q 025227 115 GDIHQPLHVGFTSDRGGNTIDVHW-YTRKQVLHHVW 149 (256)
Q Consensus 115 GDiHQPLH~~~~~D~GGN~~~V~~-~g~~~nLH~vW 149 (256)
+++-.|.++. -+.+++.+.|.| +|....+|.+|
T Consensus 4 ~~~~~P~~i~--l~~~~~~L~v~w~DG~~~~~~~~w 37 (101)
T 3luu_A 4 DPRTQPLEIR--PLMISRVMEVDWADGHTSRLTFEH 37 (101)
T ss_dssp CGGGCEEEEE--EETTTTEEEEEETTSCEEEEEHHH
T ss_pred CCCCCCeEEE--EeCCCCEEEEEeCCCCEEEECHHH
Confidence 3455666553 356678899999 57788899988
No 9
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=10.72 E-value=3e+02 Score=17.52 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCCCCCCCcccccHHHHHHHH-HH
Q 025227 79 GAINNYTTQLLSYNSASSSHSEYNLTEALLFL-SH 112 (256)
Q Consensus 79 ~ai~~~~~~L~~~~~~~~~~~~~~~~~aLk~L-iH 112 (256)
.|...|..-|++.+.++ .|+...+++.+ ++
T Consensus 4 Eae~aF~~lL~~~~V~s----~wsweqamr~i~i~ 34 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDS----TWSFSRIISELGTR 34 (59)
T ss_dssp HHHHHHHHHHHHTTCCS----SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC----CCcHHHHHHHhccC
Confidence 35667778888877664 68888899988 55
No 10
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=9.86 E-value=1.5e+02 Score=17.73 Aligned_cols=17 Identities=24% Similarity=0.213 Sum_probs=14.6
Q ss_pred HHHHHHHhhcCCCCCcc
Q 025227 107 LLFLSHFIGDIHQPLHV 123 (256)
Q Consensus 107 Lk~LiHlvGDiHQPLH~ 123 (256)
|+-+.+-+||...|+.-
T Consensus 6 i~~mMy~fGD~~~P~~E 22 (45)
T 1bh9_A 6 LRCMMYGFGDDQNPYTE 22 (45)
T ss_dssp HHHHHHHTTSCSSCCHH
T ss_pred HHHHHHHhCCCCCCcHH
Confidence 77888999999999864
Done!