BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025228
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VE3|A Chain A, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE3|B Chain B, Retinoic Acid Bound Cyanobacterial Cyp120a1
pdb|2VE4|A Chain A, Substrate Free Cyanobacterial Cyp120a1
pdb|2VE4|B Chain B, Substrate Free Cyanobacterial Cyp120a1
Length = 444
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 86/165 (52%), Gaps = 6/165 (3%)
Query: 62 FIDVRVKRFGSIFTTHIFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLLGKHSLL 121
F R ++FG IF T +FG+ +F + NRF+ E + F+ ++P S LLG ++L
Sbjct: 35 FGKKRQQQFGPIFKTRLFGKNVIFISGALANRFLFTKEQETFQATWPLSTRILLGPNALA 94
Query: 122 LMKGSLHK-RMHSLTMSFANSSIIRDHLLVDIDRLVRLHMDSW--TDRVLLMEEAKKITF 178
G +H+ R L +F ++ D L +D +V+ +++ W + V+ + +++TF
Sbjct: 95 TQMGEIHRSRRKILYQAFLPRTL--DSYLPKMDGIVQGYLEQWGKANEVIWYPQLRRMTF 152
Query: 179 ELTVKQLMSFDPNEWTESLRKEYVLVIEGFFTVPLPIFSTTYRRA 223
++ M ++ L + I+G F++P+P+ +T + ++
Sbjct: 153 DVAATLFMGEKVSQ-NPQLFPWFETYIQGLFSLPIPLPNTLFGKS 196
>pdb|3RBT|A Chain A, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|B Chain B, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|C Chain C, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
pdb|3RBT|D Chain D, Crystal Structure Of Glutathione S-Transferase Omega 3
From The Silkworm Bombyx Mori
Length = 246
Score = 30.8 bits (68), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 140 NSSIIRDHLLVDIDRLVRLHMDSWTDRVLLMEEAKKITFEL 180
N+ +I L D RL + M+ + RVLL+ EAK+I +E+
Sbjct: 14 NAGVIPPPALTDKLRLYHVDMNPYGHRVLLVLEAKRIKYEV 54
>pdb|2W0A|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor
N-[(1s)-2-Methyl-1-(Pyridin-4-Ylcarbamoyl)propyl]
Cyclohexanecarboxamide
Length = 455
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 74 FTTHIFGEPTVFSADPETNRFILQN 98
F T IFGE VF A PE + +L N
Sbjct: 78 FMTPIFGEAVVFDASPERRKEMLHN 102
>pdb|1X8V|A Chain A, Estriol-Bound And Ligand-Free Structures Of Sterol
14alpha- Demethylase (Cyp51)
pdb|2BZ9|A Chain A, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2BZ9|B Chain B, Ligand-Free Structure Of Sterol 14alpha-Demethylase From
Mycobacterium Tuberculosis In P2(1) Space Group
pdb|2CI0|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2CIB|A Chain A, High Throughput Screening And X-Ray Crystallography
Assisted Evaluation Of Small Molecule Scaffolds For
Cyp51 Inhibitors
pdb|2VKU|A Chain A, 4,4'-Dihydroxybenzophenone Mimics Sterol Substrate In The
Binding Site Of Sterol 14alpha-Demethylase (Cyp51) In
The X-Ray Structure Of The Complex
pdb|2W09|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor Cis-4-
Methyl-N-[(1s)-3-(Methylsulfanyl)-1-(Pyridin-4-
Ylcarbamoyl)propyl]cyclohexanecarboxamide
pdb|2W0B|A Chain A, Cyp51 Of M. Tuberculosis Bound To An Inhibitor 3-{[(4-
Methylphenyl)sulfonyl]amino}propyl Pyridin-4-Ylcarbamate
Length = 455
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 74 FTTHIFGEPTVFSADPETNRFILQN 98
F T IFGE VF A PE + +L N
Sbjct: 78 FMTPIFGEGVVFDASPERRKEMLHN 102
>pdb|1U13|A Chain A, Crystal Structure Analysis Of The C37lC151TC442A-Triple
Mutant Of Cyp51 From Mycobacterium Tuberculosis
Length = 455
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 74 FTTHIFGEPTVFSADPETNRFILQN 98
F T IFGE VF A PE + +L N
Sbjct: 78 FMTPIFGEGVVFDASPERRKEMLHN 102
>pdb|1EA1|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With Fluconazole
pdb|1E9X|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Complex With 4-
Phenylimidazole
pdb|1H5Z|A Chain A, Cytochrome P450 14 Alpha-Sterol Demethylase (Cyp51) From
Mycobacterium Tuberculosis In Ferric Low-Spin State
Length = 455
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 74 FTTHIFGEPTVFSADPETNRFILQN 98
F T IFGE VF A PE + +L N
Sbjct: 78 FMTPIFGEGVVFDASPERRKEMLHN 102
>pdb|3MPR|A Chain A, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|B Chain B, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|C Chain C, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
pdb|3MPR|D Chain D, Crystal Structure Of EndonucleaseEXONUCLEASEPHOSPHATASE
FAMILY Protein From Bacteroides Thetaiotaomicron,
Northeast Structural Genomics Consortium Target Btr318a
Length = 298
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 161 DSWTDRVLLMEEAKKITFELTVKQ-LMSFDPNEWTESLRKEYVLVIEGFFTVPLPIFSTT 219
D++ + +L + +K + + +FDPN +TES R +++ V F + + T
Sbjct: 189 DAFVSKGVLCDSYEKCDYRYALNGTFNNFDPNSFTES-RIDHIFVSPSFHVKRYGVLTDT 247
Query: 220 YR 221
YR
Sbjct: 248 YR 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,075,202
Number of Sequences: 62578
Number of extensions: 212317
Number of successful extensions: 422
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 415
Number of HSP's gapped (non-prelim): 7
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)