Query 025229
Match_columns 256
No_of_seqs 156 out of 1138
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 03:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2881 Predicted membrane pro 99.9 1.7E-26 3.8E-31 211.4 8.0 107 136-252 63-171 (294)
2 PF01169 UPF0016: Uncharacteri 99.9 9.4E-24 2E-28 161.0 6.4 76 142-227 1-78 (78)
3 COG2119 Predicted membrane pro 99.8 4.9E-21 1.1E-25 167.9 10.9 88 139-236 99-187 (190)
4 COG2119 Predicted membrane pro 99.8 4.6E-21 1E-25 168.0 9.3 89 140-238 2-90 (190)
5 KOG2881 Predicted membrane pro 99.7 2.8E-18 6.1E-23 157.7 4.8 87 139-235 206-292 (294)
6 TIGR02840 spore_YtaF putative 96.7 0.0054 1.2E-07 54.2 6.8 51 179-239 37-87 (206)
7 COG4280 Predicted membrane pro 96.1 0.042 9E-07 50.4 9.3 56 169-235 31-86 (236)
8 PRK11469 hypothetical protein; 95.3 0.015 3.3E-07 51.0 3.1 47 182-239 47-93 (188)
9 PF03596 Cad: Cadmium resistan 93.4 0.23 5.1E-06 44.2 6.5 53 170-233 24-76 (191)
10 COG1971 Predicted membrane pro 91.1 0.17 3.7E-06 45.3 2.7 51 182-243 47-97 (190)
11 PF01810 LysE: LysE type trans 88.8 1.4 3.1E-05 36.8 6.3 72 160-239 12-86 (191)
12 COG4300 CadD Predicted permeas 84.4 4.9 0.00011 36.6 7.6 80 156-246 18-100 (205)
13 PF03741 TerC: Integral membra 82.7 5 0.00011 35.2 6.8 68 155-235 12-82 (183)
14 TIGR00948 2a75 L-lysine export 81.2 4.7 0.0001 33.8 6.0 67 161-235 11-78 (177)
15 COG1280 RhtB Putative threonin 80.4 9.1 0.0002 33.6 7.7 71 154-234 20-94 (208)
16 PRK10229 threonine efflux syst 80.2 12 0.00025 32.2 8.1 76 151-235 16-94 (206)
17 TIGR00779 cad cadmium resistan 79.4 2.8 6E-05 37.7 4.2 55 168-233 21-75 (193)
18 PF01810 LysE: LysE type trans 78.9 8.4 0.00018 32.2 6.8 21 214-234 171-191 (191)
19 TIGR00949 2A76 The Resistance 77.0 4.3 9.3E-05 33.9 4.5 65 161-234 8-76 (185)
20 PF01914 MarC: MarC family int 75.2 16 0.00035 32.3 7.8 56 173-237 39-94 (203)
21 TIGR03717 R_switched_YjbE inte 72.6 14 0.00031 32.2 6.7 64 155-233 14-81 (176)
22 PRK10995 inner membrane protei 71.7 4.8 0.0001 35.9 3.7 24 213-236 74-97 (221)
23 PF03741 TerC: Integral membra 71.4 8.7 0.00019 33.7 5.1 75 141-233 104-183 (183)
24 TIGR03716 R_switched_YkoY inte 70.3 15 0.00032 33.4 6.5 73 151-236 101-176 (215)
25 PF02659 DUF204: Domain of unk 69.4 9.7 0.00021 27.5 4.2 35 182-227 33-67 (67)
26 PRK10520 rhtB homoserine/homos 68.8 28 0.0006 29.9 7.6 77 149-234 15-94 (205)
27 COG1971 Predicted membrane pro 67.8 8.2 0.00018 34.8 4.3 43 183-236 147-189 (190)
28 COG0861 TerC Membrane protein 66.9 20 0.00043 33.4 6.7 79 140-236 131-214 (254)
29 TIGR03716 R_switched_YkoY inte 66.0 15 0.00032 33.4 5.6 65 155-233 9-76 (215)
30 PRK10958 leucine export protei 65.9 14 0.0003 32.3 5.3 72 154-235 24-99 (212)
31 TIGR03718 R_switched_Alx integ 64.5 16 0.00035 34.9 5.7 77 144-233 63-147 (302)
32 PRK10323 cysteine/O-acetylseri 59.4 28 0.0006 30.0 5.9 69 157-233 22-93 (195)
33 PRK11469 hypothetical protein; 57.5 14 0.00031 32.4 3.9 45 180-235 142-186 (188)
34 TIGR03718 R_switched_Alx integ 56.3 26 0.00056 33.5 5.6 75 147-234 193-270 (302)
35 COG4280 Predicted membrane pro 56.3 14 0.0003 34.3 3.7 69 157-236 132-201 (236)
36 PRK09304 arginine exporter pro 55.8 27 0.00058 30.3 5.3 65 162-234 26-91 (207)
37 PRK10019 nickel/cobalt efflux 55.1 25 0.00055 33.2 5.3 24 213-236 88-111 (279)
38 TIGR03717 R_switched_YjbE inte 52.7 39 0.00085 29.5 5.8 68 152-232 103-174 (176)
39 TIGR00997 ispZ intracellular s 52.7 33 0.0007 30.4 5.3 46 175-232 22-67 (178)
40 PRK10995 inner membrane protei 50.6 48 0.001 29.6 6.1 26 211-236 189-214 (221)
41 PF01914 MarC: MarC family int 50.3 60 0.0013 28.8 6.6 75 155-236 123-200 (203)
42 TIGR00145 FTR1 family protein. 50.1 42 0.0009 31.6 5.9 61 171-234 38-98 (283)
43 TIGR00427 membrane protein, Ma 46.1 49 0.0011 29.4 5.4 53 172-233 41-93 (201)
44 PRK00259 intracellular septati 45.4 58 0.0013 28.7 5.7 46 175-232 22-67 (179)
45 PRK11111 hypothetical protein; 44.4 60 0.0013 29.2 5.8 29 208-236 178-206 (214)
46 PRK11111 hypothetical protein; 42.3 19 0.00041 32.4 2.3 53 172-233 44-96 (214)
47 PRK10621 hypothetical protein; 40.2 56 0.0012 29.4 4.9 46 181-236 211-256 (266)
48 PF11139 DUF2910: Protein of u 38.5 2.6E+02 0.0056 24.3 8.7 59 172-234 32-90 (214)
49 COG2917 Intracellular septatio 36.7 52 0.0011 29.7 4.0 46 175-232 22-67 (180)
50 PF05513 TraA: TraA; InterPro 36.6 1.2E+02 0.0026 25.7 6.0 79 102-193 39-119 (119)
51 PF03239 FTR1: Iron permease F 35.8 1.2E+02 0.0026 28.4 6.5 85 137-234 131-217 (306)
52 PF02535 Zip: ZIP Zinc transpo 33.2 1.7E+02 0.0038 26.0 6.9 74 149-231 211-285 (317)
53 PRK10019 nickel/cobalt efflux 32.8 2.2E+02 0.0048 27.0 7.8 77 146-236 197-275 (279)
54 PRK04201 zinc transporter ZupT 32.6 2.9E+02 0.0064 25.1 8.4 84 143-233 152-235 (265)
55 COG0730 Predicted permeases [G 32.3 1.4E+02 0.0029 26.5 6.0 54 172-235 69-122 (258)
56 PF03739 YjgP_YjgQ: Predicted 32.1 1.6E+02 0.0036 26.7 6.7 76 138-232 272-353 (354)
57 COG2095 MarC Multiple antibiot 32.0 34 0.00073 30.8 2.2 60 172-240 41-100 (203)
58 PRK15071 lipopolysaccharide AB 31.7 3.6E+02 0.0078 25.0 8.9 76 139-233 272-354 (356)
59 COG2215 ABC-type uncharacteriz 31.3 1.4E+02 0.003 29.0 6.2 24 213-236 131-154 (303)
60 TIGR00427 membrane protein, Ma 31.3 1.4E+02 0.003 26.5 5.9 24 211-234 177-200 (201)
61 PF04306 DUF456: Protein of un 30.5 2.5E+02 0.0055 23.6 7.1 90 139-233 30-124 (140)
62 PF01925 TauE: Sulfite exporte 30.2 1.4E+02 0.0031 25.5 5.7 45 175-229 195-239 (240)
63 COG0730 Predicted permeases [G 30.1 1.8E+02 0.0039 25.7 6.4 45 181-235 211-255 (258)
64 TIGR02230 ATPase_gene1 F0F1-AT 29.4 1.7E+02 0.0037 23.9 5.6 24 180-206 50-73 (100)
65 PF04279 IspA: Intracellular s 28.6 1.4E+02 0.0031 26.0 5.4 44 178-233 25-68 (176)
66 PF03239 FTR1: Iron permease F 27.7 1.1E+02 0.0024 28.6 4.8 60 171-234 35-98 (306)
67 COG1238 Predicted membrane pro 27.5 3.4E+02 0.0074 23.7 7.5 90 140-233 21-110 (161)
68 PF12811 BaxI_1: Bax inhibitor 27.1 5.5E+02 0.012 24.4 10.0 61 140-203 93-170 (274)
69 PRK09304 arginine exporter pro 25.7 2E+02 0.0043 24.9 5.8 24 213-236 181-204 (207)
70 KOG1397 Ca2+/H+ antiporter VCX 25.6 93 0.002 31.5 4.1 22 177-198 195-216 (441)
71 PF11915 DUF3433: Protein of u 24.5 1.2E+02 0.0025 23.0 3.7 38 155-193 53-90 (92)
72 PF06724 DUF1206: Domain of Un 24.5 94 0.002 22.8 3.1 24 214-237 48-71 (73)
73 KOG3415 Putative Rab5-interact 24.4 1.7E+02 0.0038 25.0 5.0 17 152-168 33-49 (129)
74 TIGR00949 2A76 The Resistance 24.2 2.3E+02 0.0051 23.5 5.8 17 213-229 168-184 (185)
75 COG2095 MarC Multiple antibiot 24.1 2.7E+02 0.0059 25.1 6.5 75 155-236 122-197 (203)
76 PRK10621 hypothetical protein; 23.0 2.5E+02 0.0054 25.2 6.1 51 173-233 74-124 (266)
77 PRK11195 lysophospholipid tran 22.8 4.6E+02 0.01 24.2 7.9 61 142-206 5-68 (393)
78 PRK10958 leucine export protei 21.1 4E+02 0.0086 23.2 6.8 20 214-233 191-210 (212)
79 PRK00293 dipZ thiol:disulfide 20.8 1.4E+02 0.0029 30.5 4.3 48 174-231 215-262 (571)
80 COG4858 Uncharacterized membra 20.8 4.5E+02 0.0098 24.5 7.2 16 171-186 161-176 (226)
81 PRK10229 threonine efflux syst 20.5 1.4E+02 0.003 25.6 3.7 21 213-233 185-205 (206)
82 COG0861 TerC Membrane protein 20.4 5.7E+02 0.012 23.9 8.0 80 143-235 17-102 (254)
83 COG0795 Predicted permeases [G 20.3 3.5E+02 0.0077 25.1 6.7 78 140-233 279-360 (364)
No 1
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.93 E-value=1.7e-26 Score=211.42 Aligned_cols=107 Identities=37% Similarity=0.604 Sum_probs=96.0
Q ss_pred cchhHHHHHHHHHHHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhH
Q 025229 136 GDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (256)
Q Consensus 136 ~~~l~aFlsAF~lIFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii 215 (256)
.++..+|..+|+|||++|+||||||++++|||||+|..||.|+..||++||++++++|+.. ++.+|+++ +
T Consensus 63 ~s~~~~f~~SiSmI~vsEiGDKTFfiAAlmAmr~~R~~Vf~Ga~~AL~lMTiLS~~lG~aa---p~lipr~~-------T 132 (294)
T KOG2881|consen 63 SSFLQGFTASISMIFVSEIGDKTFFIAALMAMRYPRLTVFSGAMSALALMTILSVLLGWAA---PNLIPRKY-------T 132 (294)
T ss_pred HHHHHHHHHhhheeeeeeccchHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhh---hhhchHHH-------H
Confidence 5689999999999999999999999999999999999999999999999999999999865 58899988 9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCC--CCchhHHHHhhhh
Q 025229 216 DIAAVCLLVYFGVSTLLDAASTDG--LKSEDEQKEVKFN 252 (256)
Q Consensus 216 ~~iAa~LFl~FGl~tL~ea~~~~~--~~~e~E~~EaEl~ 252 (256)
++++++||++||+|||+|++++.+ .++|.||+|+|++
T Consensus 133 ~~~~t~LF~iFGlkmL~eg~~~~~~~~~eE~eEVe~el~ 171 (294)
T KOG2881|consen 133 YYLATALFLIFGLKMLKEGWEMSPSEGQEELEEVEAELA 171 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHH
Confidence 999999999999999999987544 3445566666665
No 2
>PF01169 UPF0016: Uncharacterized protein family UPF0016; InterPro: IPR001727 A number of uncharacterised proteins share regions of similarities. These include, Saccharomyces cerevisiae (Baker's yeast) hypothetical protein YBR187w. Schizosaccharomyces pombe (Fission yeast) hypothetical protein SpAC17G8.08c. Mus musculus (Mouse) protein pFT27. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0615. These are hydrophobic proteins of 200 to 320 amino acids that seem to contain six or seven transmembrane domains.; GO: 0016020 membrane
Probab=99.89 E-value=9.4e-24 Score=160.99 Aligned_cols=76 Identities=43% Similarity=0.603 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhcc--CCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHH
Q 025229 142 FASAFLLIFFSELGDKTFFIAALLAARN--SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (256)
Q Consensus 142 FlsAF~lIFLAELGDKTQLatalLAaR~--~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iA 219 (256)
|+++|.++|++|+|||||++++.||+|| ++|.|++|+.+|++++|+++|++|+++ .+++|+++ +++++
T Consensus 1 F~~sf~~iflaE~GDKTQl~t~~La~~~~~~~~~V~~G~~~al~~~~~lav~~G~~l---~~~ip~~~-------i~~~~ 70 (78)
T PF01169_consen 1 FLTSFLLIFLAELGDKTQLATIALAARYPRNPWPVFAGATLALALATGLAVLLGSWL---ASRIPERY-------IKWVA 70 (78)
T ss_pred CHHHHHHHHHHHhCcHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCHHH-------HHHHH
Confidence 5789999999999999999999999999 789999999999999999999999976 68999998 99999
Q ss_pred HHHHHHHH
Q 025229 220 VCLLVYFG 227 (256)
Q Consensus 220 a~LFl~FG 227 (256)
+++|++||
T Consensus 71 ~~lFl~fG 78 (78)
T PF01169_consen 71 GALFLLFG 78 (78)
T ss_pred HHHHHHHC
Confidence 99999997
No 3
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=4.9e-21 Score=167.91 Aligned_cols=88 Identities=32% Similarity=0.449 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHH
Q 025229 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDI 217 (256)
Q Consensus 139 l~aFlsAF~lIFLAELGDKTQLatalLAaR~~~-~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~ 217 (256)
+..|+++|+++|++|||||||++|++||++|+. |.||+|+.+||+++++++|++|+++ ++++|+|. ++.
T Consensus 99 ~~~f~~tfi~~FlaE~GDKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~i---a~ki~~r~-------l~~ 168 (190)
T COG2119 99 RGVFVTTFITFFLAELGDKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLI---AGKLPERL-------LRF 168 (190)
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHH---HccCCHHH-------HHH
Confidence 559999999999999999999999999999875 9999999999999999999999965 79999997 999
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 025229 218 AAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 218 iAa~LFl~FGl~tL~ea~~ 236 (256)
+++++|++||+.++|+...
T Consensus 169 ~aallFl~fal~~~~~~~~ 187 (190)
T COG2119 169 IAALLFLIFALVLLWQVFE 187 (190)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998654
No 4
>COG2119 Predicted membrane protein [Function unknown]
Probab=99.84 E-value=4.6e-21 Score=168.04 Aligned_cols=89 Identities=35% Similarity=0.463 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHH
Q 025229 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (256)
Q Consensus 140 ~aFlsAF~lIFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iA 219 (256)
.+++.+.++|++||+|||||+++++||+||+||+||.|+..|++.||.+++++|++. ...+|+++ .+|++
T Consensus 2 ~~~~~s~~~v~laEiGDKT~lia~llA~r~~~~~v~~g~~~a~~~m~~la~~vG~~~---~~~~~~~~-------~~~~~ 71 (190)
T COG2119 2 EALLVSLLMVALAEIGDKTQLIAMLLAMRYRRWPVFAGIAIALFAMHALAVLVGHAA---ASLLPERP-------LAWAS 71 (190)
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHH---hccCchhH-------HHHHH
Confidence 578899999999999999999999999999999999999999999999999999865 67889987 89999
Q ss_pred HHHHHHHHHHHHHhhhcCC
Q 025229 220 VCLLVYFGVSTLLDAASTD 238 (256)
Q Consensus 220 a~LFl~FGl~tL~ea~~~~ 238 (256)
+++|++||+|+++|.-.++
T Consensus 72 ~~~Flafav~~l~edk~~~ 90 (190)
T COG2119 72 GVLFLAFAVWMLIEDKEDD 90 (190)
T ss_pred HHHHHHHHHHHhccccccc
Confidence 9999999999999854443
No 5
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=99.72 E-value=2.8e-18 Score=157.72 Aligned_cols=87 Identities=26% Similarity=0.345 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHH
Q 025229 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIA 218 (256)
Q Consensus 139 l~aFlsAF~lIFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~i 218 (256)
...|+.+|.++|++|||||+|++|++||++.+++.|++|+.+|+.+||+++|+.|+.+ +++|++|. +.++
T Consensus 206 spifikaFsltF~aEwGDRSQlaTI~laA~en~~gV~~G~~iGH~lCT~lAVigGk~l---AskIS~rt-------Vt~~ 275 (294)
T KOG2881|consen 206 SPIFIKAFSLTFLAEWGDRSQLATIALAADENPLGVAIGAIIGHALCTGLAVIGGKYL---ASKISVRT-------VTLI 275 (294)
T ss_pred cHHHHHHHHHHHHHHhccHHHHHHHHHhcccCcceeeeccHHHHHHHHHHHHhhhHHH---hhhheeEE-------EEEe
Confidence 4689999999999999999999999999999999999999999999999999999965 78999987 8999
Q ss_pred HHHHHHHHHHHHHHhhh
Q 025229 219 AVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 219 Aa~LFl~FGl~tL~ea~ 235 (256)
++++|+.||+..++++.
T Consensus 276 ggi~Fi~Fgl~~i~~~~ 292 (294)
T KOG2881|consen 276 GGILFIIFGLVYIFQGF 292 (294)
T ss_pred cchhHHHHHHHHHhcCC
Confidence 99999999999988754
No 6
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=96.66 E-value=0.0054 Score=54.21 Aligned_cols=51 Identities=20% Similarity=0.343 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 025229 179 FGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDG 239 (256)
Q Consensus 179 ~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~~~~ 239 (256)
.....+|+.++..+|+.+ .+++|.++ .++++++++++.|++|++|++..++
T Consensus 37 g~~~~~~~~lg~~~G~~~---~~~i~~~~-------~~~ig~~iLi~iG~~mi~~~~~~~~ 87 (206)
T TIGR02840 37 AVISGLFIFISMLLGKFL---AKFLPPKV-------TEILGAFILIAIGIWIIYNAFRPKK 87 (206)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHhchhh-------HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334558999999999976 57888766 8999999999999999999987544
No 7
>COG4280 Predicted membrane protein [Function unknown]
Probab=96.11 E-value=0.042 Score=50.36 Aligned_cols=56 Identities=21% Similarity=0.403 Sum_probs=50.3
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025229 169 NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 169 ~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~ 235 (256)
++...-+.|+.+|+++.-.++.++|..+ ..+|..+ .+++++++.+.||..-++.+.
T Consensus 31 ~~wr~al~ga~lglalvl~l~lvlGk~L----~lvPln~-------lqiv~gvLLllFG~rw~Rsav 86 (236)
T COG4280 31 YKWRLALIGAVLGLALVLILTLVLGKLL----YLVPLNY-------LQIVSGVLLLLFGYRWIRSAV 86 (236)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHccce----eeeechH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999999999988 5789887 899999999999998887764
No 8
>PRK11469 hypothetical protein; Provisional
Probab=95.28 E-value=0.015 Score=50.96 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCC
Q 025229 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDG 239 (256)
Q Consensus 182 L~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~~~~ 239 (256)
.++|+.++-.+|+.+ .+++|. + .+|++++++++.|+||++|+++.++
T Consensus 47 q~~m~~~g~~~G~~l---~~~i~~-~-------~~~i~~~lL~~lG~~mi~e~~~~~~ 93 (188)
T PRK11469 47 ETLTPLIGWGMGMLA---SRFVLE-W-------NHWIAFVLLIFLGGRMIIEGFRGAD 93 (188)
T ss_pred HHHHHHHHHHHHHHH---HHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367888888899876 456654 4 7999999999999999999987553
No 9
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=93.44 E-value=0.23 Score=44.16 Aligned_cols=53 Identities=11% Similarity=0.219 Sum_probs=41.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 170 SAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 170 ~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
+++.|.+|-.+|..+.-++|.+++..+ ..+|+.| +-=.-|.+=+++|++.++.
T Consensus 24 ~~~~I~~GqylG~~~Lv~~Sl~~~~~l----~~ip~~w-------iLGlLGliPI~lGi~~l~~ 76 (191)
T PF03596_consen 24 RRRQIVIGQYLGFTILVLASLLGAFGL----LFIPPEW-------ILGLLGLIPIYLGIKALFS 76 (191)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHHHHHHHHHHHHHHHHHc
Confidence 478999999999998888888888765 4788776 4233567778999998874
No 10
>COG1971 Predicted membrane protein [Function unknown]
Probab=91.12 E-value=0.17 Score=45.35 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCch
Q 025229 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGLKSE 243 (256)
Q Consensus 182 L~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~~~~~~~e 243 (256)
.++|-+++-+.|..+ .+++ ..+ .+|++++++++.|+||++++++.++++.+
T Consensus 47 ~~i~pliG~~~g~~~---s~~i-~~~-------~~wigf~lL~~lG~~mI~e~f~~~~~~~~ 97 (190)
T COG1971 47 QAIMPLIGWFIGKFL---STFI-AEW-------AHWIGFVLLIILGLKMIIEGFKNEEDEFV 97 (190)
T ss_pred HHHHHHHHHHHHHHH---HHHH-HHH-------HHHHHHHHHHHHHHHHHHHHhchhhcchh
Confidence 456677777777765 2222 233 79999999999999999999987654433
No 11
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=88.80 E-value=1.4 Score=36.83 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=50.6
Q ss_pred HHHHHHHhccCC---chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 160 FIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 160 LatalLAaR~~~---~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
+..+--++++++ ..+.+|...+-++...++++....+ .+..|.- ..++++++++.++++|+++++...+
T Consensus 12 ~~~i~~~~~~G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l---~~~~~~~-----~~~l~~~G~~~L~~lg~~~~~~~~~ 83 (191)
T PF01810_consen 12 LLVISNGLRKGFKAGLPVALGAALGDLIYILLAVFGLSAL---LKSSPWL-----FMILKLLGALYLLYLGYKLLRSKFS 83 (191)
T ss_pred HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhChHH-----HHHHHHHHHHHHHHHHHHHHhcccC
Confidence 445566667664 4777888888888887777766544 2333332 2458999999999999999987665
Q ss_pred CCC
Q 025229 237 TDG 239 (256)
Q Consensus 237 ~~~ 239 (256)
.+.
T Consensus 84 ~~~ 86 (191)
T PF01810_consen 84 SKS 86 (191)
T ss_pred cch
Confidence 444
No 12
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=84.45 E-value=4.9 Score=36.61 Aligned_cols=80 Identities=14% Similarity=0.240 Sum_probs=46.2
Q ss_pred chHHHHHHHHHhc---cCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025229 156 DKTFFIAALLAAR---NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (256)
Q Consensus 156 DKTQLatalLAaR---~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ 232 (256)
|--=+..+.+|.+ .+.+-+++|=.+|.+..-+.|.++.- +.+.+|++| +-=.-|.+=++.|+|.++
T Consensus 18 D~lIiL~l~Far~~~~k~~~~I~~GQyLGs~~lilaSL~~a~----v~~fvp~e~-------I~glLGLIPi~LGik~l~ 86 (205)
T COG4300 18 DLLIILLLFFARRKSRKDILHIYLGQYLGSVILILASLLFAF----VLNFVPEEW-------ILGLLGLIPIYLGIKVLI 86 (205)
T ss_pred HHHHHHHHHHHHhcccCcEEEEeHHHHHhHHHHHHHHHHHHH----HHhhCcHHH-------HHHHHhHHHHHHhhHHhh
Confidence 4334444555544 33578888877765554444433332 235678887 444556777899999998
Q ss_pred hhhcCCCCCchhHH
Q 025229 233 DAASTDGLKSEDEQ 246 (256)
Q Consensus 233 ea~~~~~~~~e~E~ 246 (256)
.+..++++++++|.
T Consensus 87 ~~d~d~e~~~~e~L 100 (205)
T COG4300 87 LGDDDGEEEAKEEL 100 (205)
T ss_pred cccCcCchhhhHHH
Confidence 76553333333333
No 13
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=82.70 E-value=5 Score=35.16 Aligned_cols=68 Identities=19% Similarity=0.332 Sum_probs=47.0
Q ss_pred CchHHHHHHHHHh---ccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025229 155 GDKTFFIAALLAA---RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (256)
Q Consensus 155 GDKTQLatalLAa---R~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL 231 (256)
+|.-.+++++..- +++++..+.|...|+++-.++-..+...++ .. +++++++|+..++-|++++
T Consensus 12 ~DN~~vi~~~~~~lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~----~~---------~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 12 IDNAFVIAMIFRKLPPEQRRKALFWGIIGAIVLRIIFIFLASWLLS----IF---------PWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred hhHHHHHHHHHhCCCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHH----HH---------HHHHHHHHHHHHHHHHHHH
Confidence 5665555554432 235689999999999877777666665542 21 2478888888888888888
Q ss_pred Hhhh
Q 025229 232 LDAA 235 (256)
Q Consensus 232 ~ea~ 235 (256)
++..
T Consensus 79 ~~~~ 82 (183)
T PF03741_consen 79 HEER 82 (183)
T ss_pred Hhcc
Confidence 8765
No 14
>TIGR00948 2a75 L-lysine exporter.
Probab=81.24 E-value=4.7 Score=33.80 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=44.9
Q ss_pred HHHHHHhccCC-chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025229 161 IAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 161 atalLAaR~~~-~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~ 235 (256)
.++..++++++ ..+.+|...|.++...++++.-..+ ....|.-. .++++++++-.+++|+.+++...
T Consensus 11 ~vi~~~~~~~~g~~~~~G~~~g~~i~~~~~~~Gl~~l---l~~~p~~~-----~~l~~~Ga~YLlylg~~~~r~~~ 78 (177)
T TIGR00948 11 FVLRQGIRREHVLLIVALCCICDLVLIAAGVFGVAAL---LAASPILL-----AVLTWGGALFLLWYGFLAAKTAW 78 (177)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555443 4677888888888877776655433 23344332 35889999888999999998754
No 15
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=80.38 E-value=9.1 Score=33.58 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=48.1
Q ss_pred cCchHHHHHHHHHhccCC---chhhHHHHHHHHHHHHHHHHH-hcccccccccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025229 154 LGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (256)
Q Consensus 154 LGDKTQLatalLAaR~~~---~~VflGs~lAL~lmT~LaVll-G~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~ 229 (256)
-|.- .+.++.-++++++ +.+-+|..+|.++...++++. +..++ ..|.-+ .++++++++-.+++|++
T Consensus 20 PGP~-~~~v~~~~~~~G~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~----~~~~~f-----~~lk~~GaaYL~ylg~~ 89 (208)
T COG1280 20 PGPD-NLLVLARSLSRGRRAGLATALGIALGDLVHMLLAALGLAALLA----TSPALF-----TVLKLAGAAYLLYLGWK 89 (208)
T ss_pred CCcc-HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 4543 4445566677664 577788888888877777664 34432 223222 35899999999999999
Q ss_pred HHHhh
Q 025229 230 TLLDA 234 (256)
Q Consensus 230 tL~ea 234 (256)
+++..
T Consensus 90 ~~ra~ 94 (208)
T COG1280 90 ALRAG 94 (208)
T ss_pred HHhcc
Confidence 99876
No 16
>PRK10229 threonine efflux system; Provisional
Probab=80.23 E-value=12 Score=32.16 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=50.6
Q ss_pred HHhcCchHHHHHHHHHhccCC---chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHH
Q 025229 151 FSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (256)
Q Consensus 151 LAELGDKTQLatalLAaR~~~---~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FG 227 (256)
..--|- ..+.++--+.++++ ....+|...|.++..+++++.-..+ -...|.- ..++++++++..+++|
T Consensus 16 ~~sPGP-~~~~vi~~~~~~G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~l---l~~~p~~-----~~~l~~~Ga~yLlylg 86 (206)
T PRK10229 16 LMSPGP-DFFFVSQTAVSRSRKEAMMGVLGITCGVMVWAGVALLGLHLI---LEKMAWL-----HTIIMVGGGLYLCWMG 86 (206)
T ss_pred hcCCCc-hhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHH-----HHHHHHHHHHHHHHHH
Confidence 333465 66677777777764 3566788888888777766655433 1233432 2358898888889999
Q ss_pred HHHHHhhh
Q 025229 228 VSTLLDAA 235 (256)
Q Consensus 228 l~tL~ea~ 235 (256)
+.+++++.
T Consensus 87 ~~~~~~~~ 94 (206)
T PRK10229 87 YQMLRGAL 94 (206)
T ss_pred HHHHHhcc
Confidence 99988653
No 17
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=79.42 E-value=2.8 Score=37.71 Aligned_cols=55 Identities=13% Similarity=0.317 Sum_probs=39.7
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 168 RNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 168 R~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
+++++.+.+|-.+|..+.-+.|++.+..+ ..+|+.| +--.-|.+=++.|+|-+++
T Consensus 21 ~~~~~~IviGqylGf~~Lv~~Sl~~a~gl----~~iP~~w-------IlGlLGliPI~lGi~~l~~ 75 (193)
T TIGR00779 21 RKEYKDIYIGQYLGSIILILVSLLLAFGV----NLIPEKW-------VLGLLGLIPIYLGIKVAIK 75 (193)
T ss_pred CCCeeEEEEeHHHHHHHHHHHHHHHHHHH----HhCCHHH-------HHhHHhHHHHHHHHHHHhc
Confidence 46789999999999887777777755433 4788776 4233455558999998876
No 18
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=78.89 E-value=8.4 Score=32.18 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhh
Q 025229 214 IDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 214 ii~~iAa~LFl~FGl~tL~ea 234 (256)
+++.+++++|++||+++++++
T Consensus 171 ~i~~~~g~~li~~av~l~~~g 191 (191)
T PF01810_consen 171 WINRISGLLLIGFAVYLLYSG 191 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999864
No 19
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=77.04 E-value=4.3 Score=33.95 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=43.6
Q ss_pred HHHHHHhccCC---chhhHHHHHHHHHHHHHHHHH-hcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025229 161 IAALLAARNSA---ATVFAGTFGALAAMTVISVIL-GRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 161 atalLAaR~~~---~~VflGs~lAL~lmT~LaVll-G~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea 234 (256)
.++.-++++++ +.+.+|..+|.++...++++. +.++ +..|.-. .++++++++..+++|+.++++.
T Consensus 8 ~~~~~~~~~G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~----~~~~~~~-----~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 8 VVMQTSLSSGRRAGVLTILGIALGDAIWIVLSLLGLAVLI----SKSVILF-----TVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHHHHHcc
Confidence 34445555543 577788899988887777763 3333 3344321 3588999999899999988753
No 20
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=75.18 E-value=16 Score=32.34 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=33.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcC
Q 025229 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAST 237 (256)
Q Consensus 173 ~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~~ 237 (256)
...-.+..+++++.+. .++|..+ -+.+ +-+++..++++|++++..|+.|+....+.
T Consensus 39 ia~~a~~~a~~ill~f-~~~G~~i---L~~f-----gIsl~af~IaGGiiL~~ia~~ml~~~~~~ 94 (203)
T PF01914_consen 39 IARRASIIAFIILLIF-AFFGQLI---LNFF-----GISLPAFRIAGGIILFLIALEMLFGSPSS 94 (203)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH---HHHh-----CCCHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 3444445555555444 4445433 1222 12345589999999999999999765443
No 21
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=72.59 E-value=14 Score=32.19 Aligned_cols=64 Identities=25% Similarity=0.395 Sum_probs=47.8
Q ss_pred CchHHHHHHHHHhccC----CchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHH
Q 025229 155 GDKTFFIAALLAARNS----AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVST 230 (256)
Q Consensus 155 GDKTQLatalLAaR~~----~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~t 230 (256)
+|.-.+++++ +.+.+ ++..+.|...|+++..+...+....+ + + ++.++++|++.++.|+.+
T Consensus 14 ~DN~~vi~~~-t~~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll----~-~---------~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 14 GDNAVVIALA-ARNLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLL----A-I---------PFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred HHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-h---------HHHHHHHHHHHHHHHHHH
Confidence 7887777762 33333 47889999999999888877766655 2 2 237899999999999999
Q ss_pred HHh
Q 025229 231 LLD 233 (256)
Q Consensus 231 L~e 233 (256)
+.+
T Consensus 79 l~~ 81 (176)
T TIGR03717 79 LLE 81 (176)
T ss_pred Hhc
Confidence 864
No 22
>PRK10995 inner membrane protein; Provisional
Probab=71.75 E-value=4.8 Score=35.89 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 213 ~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
+..++++|++.+.+|+.|++...+
T Consensus 74 ~a~rIaGGilL~~igi~ml~~~~~ 97 (221)
T PRK10995 74 PGLRIAGGLIVAFIGFRMLFPQQK 97 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 448999999999999999976543
No 23
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=71.44 E-value=8.7 Score=33.67 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhcCchHH-----HHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhH
Q 025229 141 GFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (256)
Q Consensus 141 aFlsAF~lIFLAELGDKTQ-----LatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii 215 (256)
.++.+...| |+=|=.| ++++.++ .+.+.++.|.+.|..+|-..+-.+.+++ ++.| ++
T Consensus 104 ~~~~~v~~I---~~~DlvfSlDSV~a~~~it--~~~~iv~~g~i~si~~m~~~~~~~~~~l----~~~p---------~l 165 (183)
T PF03741_consen 104 SLWLAVIQI---ELADLVFSLDSVLAAVGIT--DDFFIVITGNIISILLMRFLSFLLAKLL----ERFP---------YL 165 (183)
T ss_pred HHHHHHHHH---HHHHHHHHHhHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HH
Confidence 344444443 4455554 3344444 6789999999999999999999999877 3343 48
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025229 216 DIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 216 ~~iAa~LFl~FGl~tL~e 233 (256)
+++++++..+.|+.++.|
T Consensus 166 ~~~~~~~L~~ig~~li~~ 183 (183)
T PF03741_consen 166 KYLAAAILGFIGVKLILE 183 (183)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999998764
No 24
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=70.31 E-value=15 Score=33.41 Aligned_cols=73 Identities=29% Similarity=0.321 Sum_probs=54.1
Q ss_pred HHhcCchHHH---HHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHH
Q 025229 151 FSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (256)
Q Consensus 151 LAELGDKTQL---atalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FG 227 (256)
.-|+=|=.|= +.++.|...+++.++.|...+...|-..+-++.+++ ++.| +++++++++..+.|
T Consensus 101 ~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~sIl~lr~~s~~l~~li----~r~p---------~L~~~~~~iL~~ig 167 (215)
T TIGR03716 101 KVELMDIAFSVDSILAAVALSGQFWVVFLGGIIGILIMRFAATIFVKLL----ERFP---------ELETAAFLLIGWIG 167 (215)
T ss_pred HHHHHHHHHHhhhHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---------HHHHHHHHHHHHHH
Confidence 3444565552 223334446789999999999999999999988866 3333 48999999999999
Q ss_pred HHHHHhhhc
Q 025229 228 VSTLLDAAS 236 (256)
Q Consensus 228 l~tL~ea~~ 236 (256)
++++.+++.
T Consensus 168 ~kLil~~~~ 176 (215)
T TIGR03716 168 VKLLLETLA 176 (215)
T ss_pred HHHHHHHHh
Confidence 999998743
No 25
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=69.36 E-value=9.7 Score=27.53 Aligned_cols=35 Identities=17% Similarity=0.501 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHH
Q 025229 182 LAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (256)
Q Consensus 182 L~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FG 227 (256)
-.+|+.++..+|+.+ .++++ ++ .+++++++++++|
T Consensus 33 ~~~~~~~G~~~G~~~---~~~~~-~~-------~~~igg~iLi~iG 67 (67)
T PF02659_consen 33 QFIMPLLGLLLGRRL---GRFIG-SY-------AEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHHH---HHHHH-HH-------HHHHHHHHHHHHC
Confidence 467888899999876 35554 33 7899999988876
No 26
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=68.81 E-value=28 Score=29.86 Aligned_cols=77 Identities=16% Similarity=0.108 Sum_probs=50.0
Q ss_pred HHHHhcCchHHHHHHHHHhccCC---chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHH
Q 025229 149 IFFSELGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVY 225 (256)
Q Consensus 149 IFLAELGDKTQLatalLAaR~~~---~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~ 225 (256)
+...--|. ..+.++.-++++++ +...+|...|..+...++++.-..+ -...|.-. .++++++++-.++
T Consensus 15 ~~~~sPGP-~~~~v~~~~~~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l---~~~~p~~~-----~~lk~~Ga~YL~~ 85 (205)
T PRK10520 15 ILSLSPGS-GAINTMSTSISHGYRGAVASIAGLQTGLAIHIVLVGVGLGAL---FSQSLLAF-----EVLKWAGAAYLIW 85 (205)
T ss_pred HHhcCCch-hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHH-----HHHHHHHHHHHHH
Confidence 33334444 34555566666653 5677799999988877776554433 12334332 3589999999999
Q ss_pred HHHHHHHhh
Q 025229 226 FGVSTLLDA 234 (256)
Q Consensus 226 FGl~tL~ea 234 (256)
+|+++++..
T Consensus 86 lg~~~~~s~ 94 (205)
T PRK10520 86 LGIQQWRAA 94 (205)
T ss_pred HHHHHHhCC
Confidence 999998764
No 27
>COG1971 Predicted membrane protein [Function unknown]
Probab=67.78 E-value=8.2 Score=34.80 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 183 AAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 183 ~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
++++.++..+|+.+ ...++.+ ..+++|++++.||++.|++.+.
T Consensus 147 ~il~~~G~~IG~~~---g~~~g~~--------ae~lgGiiLI~~G~~iL~~~~~ 189 (190)
T COG1971 147 LILSALGAIIGRKL---GKFLGKY--------AEILGGIILIGIGVKILLEHLS 189 (190)
T ss_pred HHHHHHHHHHHHHH---HHHHhhH--------HHHHHHHHHHHHHHHHHHHhcc
Confidence 45666777777655 4556544 6899999999999999998753
No 28
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=66.86 E-value=20 Score=33.37 Aligned_cols=79 Identities=23% Similarity=0.337 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHhcCchHH-----HHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchh
Q 025229 140 RGFASAFLLIFFSELGDKTF-----FIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (256)
Q Consensus 140 ~aFlsAF~lIFLAELGDKTQ-----LatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~i 214 (256)
..|+.+...|-++ |=.| ++++.++ ..++.|+.|.+.|..+|=..+-.+.+++ ++.| +
T Consensus 131 ~~f~~ai~~I~i~---D~vFSlDSV~Aa~g~~--~~~~im~~a~i~aI~~m~~aa~~l~~ll----~r~p---------~ 192 (254)
T COG0861 131 TPFWGAIIQIELA---DLVFSLDSVIAAVGMA--GHPFVMVTAVIFAILVMRFAAFLLARLL----ERHP---------T 192 (254)
T ss_pred CcHHHHHHHHHHH---HHHHhhhHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHH----HHch---------H
Confidence 4555555555443 4333 3444444 5689999999999999999999999877 3444 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 025229 215 DDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 215 i~~iAa~LFl~FGl~tL~ea~~ 236 (256)
+.+++.++.++.|++++.++..
T Consensus 193 l~~~~~~iL~~IG~kli~~~~~ 214 (254)
T COG0861 193 LKYLALVILLFIGVKLILEGLA 214 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 7899999999999999998743
No 29
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=66.04 E-value=15 Score=33.42 Aligned_cols=65 Identities=12% Similarity=0.233 Sum_probs=43.2
Q ss_pred CchHHHHHHHHH---hccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025229 155 GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (256)
Q Consensus 155 GDKTQLatalLA---aR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL 231 (256)
+|.-.+++++.. .+++++..+.|...|+++--++-.+....++ +| ++++++|+..++-|++++
T Consensus 9 ~DN~~via~~~~~LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-----~~---------~l~~iGG~~Ll~~~~k~l 74 (215)
T TIGR03716 9 ADNALVLAVMVKHLPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-----FW---------WIKAIGALYLLYLAIKHF 74 (215)
T ss_pred hhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH---------HHHHHHHHHHHHHHHHHH
Confidence 455555555433 2234579999999999888777766655442 22 267788887788888777
Q ss_pred Hh
Q 025229 232 LD 233 (256)
Q Consensus 232 ~e 233 (256)
++
T Consensus 75 ~~ 76 (215)
T TIGR03716 75 RK 76 (215)
T ss_pred Hh
Confidence 75
No 30
>PRK10958 leucine export protein LeuE; Provisional
Probab=65.86 E-value=14 Score=32.31 Aligned_cols=72 Identities=21% Similarity=0.305 Sum_probs=45.6
Q ss_pred cCchHHHHHHHHHhccCC---chhhHHHHHHHHHHHHHHHH-HhcccccccccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025229 154 LGDKTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVI-LGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (256)
Q Consensus 154 LGDKTQLatalLAaR~~~---~~VflGs~lAL~lmT~LaVl-lG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~ 229 (256)
-|.-. +..+.-+.++++ ..+.+|..+|..+...++++ +|.++ +..|.-. .++++++++-.+++|++
T Consensus 24 PGP~~-~~v~~~~~~~G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~----~~~p~~~-----~~l~~~G~~yL~~la~~ 93 (212)
T PRK10958 24 PGPNS-LYVLSTAARRGVKAGYRAACGVFIGDAVLMFLAAAGVASLL----KATPLLF-----NVVKYLGAAYLLYLGVK 93 (212)
T ss_pred CchHH-HHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHH-----HHHHHHHHHHHHHHHHH
Confidence 34433 334445555553 46677888888877666664 33333 2334332 35889999999999999
Q ss_pred HHHhhh
Q 025229 230 TLLDAA 235 (256)
Q Consensus 230 tL~ea~ 235 (256)
++++..
T Consensus 94 ~~~~~~ 99 (212)
T PRK10958 94 MLRAAL 99 (212)
T ss_pred HHHhhc
Confidence 998754
No 31
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=64.46 E-value=16 Score=34.95 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=48.2
Q ss_pred HHHHHHHHHhc---CchHHHHHHHHHhc-----cCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhH
Q 025229 144 SAFLLIFFSEL---GDKTFFIAALLAAR-----NSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (256)
Q Consensus 144 sAF~lIFLAEL---GDKTQLatalLAaR-----~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii 215 (256)
..|....+-|. +|+-+..+++++.+ +.+...+.|...|+++-.++-. +|..+ -+.+| ++
T Consensus 63 ~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~gAlvlR~i~i~-~g~~L---i~~f~---------wi 129 (302)
T TIGR03718 63 LEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILGALVLRAIFIA-LGAAL---IEQFH---------WV 129 (302)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---HHHhH---------HH
Confidence 34444555554 89999999988763 3357888999988877655544 44433 11221 35
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025229 216 DIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 216 ~~iAa~LFl~FGl~tL~e 233 (256)
.++.|+..++-|++++++
T Consensus 130 ~~ifG~fLi~~a~k~~~~ 147 (302)
T TIGR03718 130 LYIFGAFLLYTGIKMLFE 147 (302)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666666666654
No 32
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=59.44 E-value=28 Score=29.99 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhccCC---chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 157 KTFFIAALLAARNSA---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 157 KTQLatalLAaR~~~---~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
=+.+..+.-++++++ +...+|...|..+...+++.....+ ....|.-. .++++++++-.++.|+++++.
T Consensus 22 P~~~~v~~~~~~~G~r~a~~~~~G~~~g~~~~~~~~~~g~~~l---~~~~p~~~-----~vlk~~Ga~YLlyLg~~~~~s 93 (195)
T PRK10323 22 PNNILALSSATSHGFRQSTRVLAGMSLGFLIVMLLCAGISFSL---AVIDPAAV-----HLLSWAGAAYIVWLAWKIATS 93 (195)
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 345555666666653 5788899999999876666444222 22334332 357888888888999999875
No 33
>PRK11469 hypothetical protein; Provisional
Probab=57.53 E-value=14 Score=32.42 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025229 180 GALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 180 lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~ 235 (256)
+--++++..++.+|+.+ .+.+. ++ ..+++++++++.|+++|+++.
T Consensus 142 ~~s~~~~~~G~~lG~~~---g~~~g-~~-------a~~lgG~iLI~iGi~il~~h~ 186 (188)
T PRK11469 142 CATLIMSTLGMMVGRFI---GSIIG-KK-------AEILGGLVLIGIGVQILWTHF 186 (188)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHH-HH-------HHHHHHHHHHHHHHHHHHHHc
Confidence 33455666777777754 23332 22 689999999999999998864
No 34
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=56.31 E-value=26 Score=33.54 Aligned_cols=75 Identities=25% Similarity=0.375 Sum_probs=54.2
Q ss_pred HHHHHHhcCchHHH---HHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHH
Q 025229 147 LLIFFSELGDKTFF---IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLL 223 (256)
Q Consensus 147 ~lIFLAELGDKTQL---atalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LF 223 (256)
..+..-|+=|=.|= +.++.|...+++.|+.|.+.|...+-.+--++.+++ ++. |++++.++++.
T Consensus 193 ~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll----~rf---------~~L~~~~a~iL 259 (302)
T TIGR03718 193 LVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLL----ERF---------HYLKYGLAVIL 259 (302)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHH----HHh---------HHHHHHHHHHH
Confidence 34445566666553 355666677899999999988776666666666655 333 35899999999
Q ss_pred HHHHHHHHHhh
Q 025229 224 VYFGVSTLLDA 234 (256)
Q Consensus 224 l~FGl~tL~ea 234 (256)
.+.|++|+.++
T Consensus 260 ~fIGvkmll~~ 270 (302)
T TIGR03718 260 VFIGVKMLLHA 270 (302)
T ss_pred HHHHHHHHHhh
Confidence 99999999874
No 35
>COG4280 Predicted membrane protein [Function unknown]
Probab=56.25 E-value=14 Score=34.31 Aligned_cols=69 Identities=23% Similarity=0.181 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhccCCc-hhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025229 157 KTFFIAALLAARNSAA-TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 157 KTQLatalLAaR~~~~-~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~ 235 (256)
.-.++.++|.+.++.| .-..|+..|.++.-+++.++-+-+ .++|+.. +++.++++...||..=+-++.
T Consensus 132 Ev~~iVialgaa~sqwleAi~gagfA~vlvlvl~~~lh~pl----arvpe~~-------lKfvag~lL~sfGtfWlgegv 200 (236)
T COG4280 132 EVSLIVIALGAASSQWLEAIMGAGFASVLVLVLTAILHSPL----ARVPEPH-------LKFVAGALLFSFGTFWLGEGV 200 (236)
T ss_pred eeeeeeeeechhhhHHHHHHHHHHHHHHHHHHHHHHhccHH----hhCCchh-------HHHHHHHHHHHhhHHHhcccc
Confidence 3456667777777654 666777777777777777666654 4688775 899999999999987776655
Q ss_pred c
Q 025229 236 S 236 (256)
Q Consensus 236 ~ 236 (256)
.
T Consensus 201 g 201 (236)
T COG4280 201 G 201 (236)
T ss_pred C
Confidence 3
No 36
>PRK09304 arginine exporter protein; Provisional
Probab=55.80 E-value=27 Score=30.28 Aligned_cols=65 Identities=11% Similarity=0.120 Sum_probs=40.9
Q ss_pred HHHHHhccC-CchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025229 162 AALLAARNS-AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 162 talLAaR~~-~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea 234 (256)
++.-+.+++ .....+|...|.++...++++.-..+ -...|.-. .++++++++-.+++|+.+++..
T Consensus 26 v~~~~~~~~~~~~~~~Gi~~g~~~~~~la~~Gl~~L---l~~~p~~~-----~~l~~~Ga~YLlyLg~~~~rs~ 91 (207)
T PRK09304 26 VMNQGIRRQYHLMIALLCALSDLVLICAGIFGGSAL---LMQSPWLL-----ALVTWGGVAFLLWYGFGAFKTA 91 (207)
T ss_pred HHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 334455543 34666777888777777655544332 12334322 3588889888899999998764
No 37
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=55.09 E-value=25 Score=33.16 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 213 ~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
+++..+++++-+.+|+|++|..++
T Consensus 88 ~~le~~S~~lii~lGl~ll~r~~r 111 (279)
T PRK10019 88 PWLQLISAVIIISTAFWMFWRTWR 111 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999998764
No 38
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=52.71 E-value=39 Score=29.46 Aligned_cols=68 Identities=15% Similarity=0.143 Sum_probs=49.0
Q ss_pred HhcCchHHH----HHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHH
Q 025229 152 SELGDKTFF----IAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (256)
Q Consensus 152 AELGDKTQL----atalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FG 227 (256)
-|+=|=.|= .|+.=+++.+.+.++.|..++..+|-..|-++.+++ ++. |+++++++....+.|
T Consensus 103 I~~~D~~fS~DsV~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~----~~~---------p~l~~~~~~~L~~ig 169 (176)
T TIGR03717 103 IVIADAVMSLDNVLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLM----DRF---------PWIIYIGAALLGYVA 169 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH----HHH---------HHHHHHHHHHHHHHH
Confidence 344455552 233223334678999999999999999998888766 233 358899999999999
Q ss_pred HHHHH
Q 025229 228 VSTLL 232 (256)
Q Consensus 228 l~tL~ 232 (256)
+++++
T Consensus 170 ~kl~~ 174 (176)
T TIGR03717 170 GEMIV 174 (176)
T ss_pred HHHhc
Confidence 99986
No 39
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=52.67 E-value=33 Score=30.44 Aligned_cols=46 Identities=24% Similarity=0.182 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025229 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (256)
Q Consensus 175 flGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ 232 (256)
+.-++.++++.+++.+...... .+++| .+++++.++-++||..+++
T Consensus 22 I~~AT~~~~vat~~~~~~~~~~---~~~v~---------~m~~is~~lv~vFGglTl~ 67 (178)
T TIGR00997 22 IFAATIALLVATIIAIGLSYVK---YKKVE---------KMQWISFVLIVVFGGLTLI 67 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCcc---------HHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888755 34554 3789999999999998876
No 40
>PRK10995 inner membrane protein; Provisional
Probab=50.63 E-value=48 Score=29.55 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 211 DLPIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 211 d~~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
...++..+.|++...+|+.+++++.+
T Consensus 189 gl~ii~Ri~GliL~aiavq~i~~Gi~ 214 (221)
T PRK10995 189 GIEAISRLMGFLLVCMGVQFIINGIL 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999998864
No 41
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=50.34 E-value=60 Score=28.76 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHhccCCc---hhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025229 155 GDKTFFIAALLAARNSAA---TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (256)
Q Consensus 155 GDKTQLatalLAaR~~~~---~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL 231 (256)
|.-|-=+++.++++++.+ .+.+++++...+.+.+.-..+..+ .+++ +.+...++..+.|++....|+.++
T Consensus 123 GPG~It~vi~~~~~~~~~~~~~~~~~ai~~~~~~~~l~l~~a~~i---~~~l----G~~g~~vi~Ri~Glil~aiavq~i 195 (203)
T PF01914_consen 123 GPGTITTVIVLSAEAGSLQSLLIVLIAILLVALITYLILRFADKI---MRRL----GKTGLQVITRIMGLILAAIAVQMI 195 (203)
T ss_pred ChHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHh----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666677776653 333344444444444444444322 3444 344567789999999999999999
Q ss_pred Hhhhc
Q 025229 232 LDAAS 236 (256)
Q Consensus 232 ~ea~~ 236 (256)
.++.+
T Consensus 196 ~~Gl~ 200 (203)
T PF01914_consen 196 LSGLR 200 (203)
T ss_pred HHHHH
Confidence 88764
No 42
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=50.07 E-value=42 Score=31.62 Aligned_cols=61 Identities=20% Similarity=0.192 Sum_probs=39.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025229 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 171 ~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea 234 (256)
+.+|+.|+.+|++++-++++++-..+..++....+.. .+ -++-++++++....++||...+
T Consensus 38 ~~~V~~G~~~gl~~s~~~a~~~~~~~~~~~~~~~~el-~e--g~~~lvAv~~l~~m~~Wm~~~~ 98 (283)
T TIGR00145 38 RGWVWVGVLAGFAACLAIGIGVIGAYGSLQKDEFKEL-LE--GIFGVIAVVMLSYMGLWMLRMQ 98 (283)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH-HH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999988877776654321111110110 00 1256888889999999998544
No 43
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=46.10 E-value=49 Score=29.36 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=34.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
...+-.+..+.+++- +..++|..+ -+.+ +-+++-.++.+|++.+..|+.|+..
T Consensus 41 ~ia~~~~l~a~~ill-~f~~~G~~i---L~~f-----gIsl~afrIaGGiiL~~ia~~ml~~ 93 (201)
T TIGR00427 41 KIAKKANISSFIILL-IFLVFGDTI---LKLF-----GISIDAFRIAGGILLFTIAMDMLSG 93 (201)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH---HHHh-----CCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 455556666666655 444555543 1222 1244558999999999999999855
No 44
>PRK00259 intracellular septation protein A; Reviewed
Probab=45.43 E-value=58 Score=28.72 Aligned_cols=46 Identities=22% Similarity=0.225 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025229 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (256)
Q Consensus 175 flGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ 232 (256)
+..++.++++.+++++...... .+.+|. ++++++++-++||..+++
T Consensus 22 i~~AT~~~i~a~~~~~~~~~~~---~~~v~~---------m~~i~~~lv~vfGglTl~ 67 (179)
T PRK00259 22 IYAATAALIVATVIQLAISWIR---YRKVEK---------MQLISLVVVVVFGGLTLV 67 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hCCcch---------hHHHHHHHHHHHHHHHHH
Confidence 4456667777888888777654 344542 688899999999998875
No 45
>PRK11111 hypothetical protein; Provisional
Probab=44.38 E-value=60 Score=29.23 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=23.4
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 208 GQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 208 ~~~d~~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
+.+...++..+.|++...+|+.++.++.+
T Consensus 178 G~~G~~vi~RimGliL~aiaVq~i~~Gi~ 206 (214)
T PRK11111 178 GQTGINVITRIMGLLLMALGIEFIVTGIK 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445678899999999999999998764
No 46
>PRK11111 hypothetical protein; Provisional
Probab=42.31 E-value=19 Score=32.40 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
...+-.+..+.+++. +..++|..+ -+.+- =+++-.++++|++.+.+|+.|+..
T Consensus 44 ~ia~~a~l~a~~ill-~f~~~G~~i---L~~fG-----Isl~afrIaGGiiL~~ial~Ml~g 96 (214)
T PRK11111 44 KTNLTANLSVAIILL-ISLFLGDFI---LNLFG-----ISIDSFRIAGGILVVTIAMSMISG 96 (214)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHH---HHHhC-----CCHHHHHHHHHHHHHHHHHHHhCC
Confidence 445555555555555 456677654 23331 234558999999999999999854
No 47
>PRK10621 hypothetical protein; Provisional
Probab=40.18 E-value=56 Score=29.38 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 181 ALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 181 AL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
.+++.+.+++.+|..+ .+++|++. .+.+..++.++.|++++++.+.
T Consensus 211 ~l~~g~~~G~~lG~~l---~~~~~~~~-------lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 211 VMLVGQFLGARLGARL---VLSKGQKL-------IRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred HHHHHHHHHHHHHHHH---HHHcCchH-------hHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677888888755 56788876 7888888888999999988664
No 48
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=38.49 E-value=2.6e+02 Score=24.33 Aligned_cols=59 Identities=12% Similarity=0.012 Sum_probs=37.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhh
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea 234 (256)
+..++|..++.++..++...+.+.+. +..... ...-..+++++.|++++.+|++..+..
T Consensus 32 ~af~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~l~lGv~ll~~a~~~~~~~ 90 (214)
T PF11139_consen 32 LAFLAGWFLGYLAVGLVLLFGLDALP---SGSSSA-PSPVVGWLQLVLGVLLLLLAVRVWRRR 90 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc---cccccC-CccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45555777777777776666666542 222110 122355688999999999999887654
No 49
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=36.72 E-value=52 Score=29.72 Aligned_cols=46 Identities=20% Similarity=0.152 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHH
Q 025229 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLL 232 (256)
Q Consensus 175 flGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ 232 (256)
+-.++..++++|++.+.+.... -++++ .++++++++-++||..+|+
T Consensus 22 I~~AT~~livAt~i~l~~~w~~---~rkv~---------km~l~s~~~v~vFG~lTl~ 67 (180)
T COG2917 22 IYAATAVLIVATVIQLAILWIK---YRKVE---------KMQLISGVVVVVFGGLTLI 67 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HhhhH---------HHHHHHHHHHHHhchhHhh
Confidence 4455666777777777777654 23333 3677777777778877775
No 50
>PF05513 TraA: TraA; InterPro: IPR008873 Conjugative transfer of a bacteriocin plasmid, pPD1, of Enterococcus faecalis is induced in response to a peptide sex pheromone, cPD1, secreted from plasmid-free recipient cells. cPD1 is taken up by a pPD1 donor cell and binds to an intracellular receptor, TraA. Once a recipient cell acquires pPD1, it starts to produce an inhibitor of cPD1, termed iPD1, which functions as a TraA antagonist and blocks self-induction in donor cells. TraA transduces the signal of cPD1 to the mating response [].; GO: 0000746 conjugation, 0005576 extracellular region
Probab=36.61 E-value=1.2e+02 Score=25.65 Aligned_cols=79 Identities=22% Similarity=0.319 Sum_probs=41.8
Q ss_pred HHHHHHhhhccchhhhhcccc-cCCCCCc-CCCCCccchhHHHHHHHHHHHHHhcCchHHHHHHHHHhccCCchhhHHHH
Q 025229 102 VMFFGLLTLQGSQTAVAAVDF-ASGLQSF-PFLGDLGDISRGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTF 179 (256)
Q Consensus 102 ~~~~~~~~l~~~~~~~~~sd~-~~~~~~~-~~~g~~~~~l~aFlsAF~lIFLAELGDKTQLatalLAaR~~~~~VflGs~ 179 (256)
.++..++.+..++++ .+.|. +.+.+.. .+.|.-.+.... +.++|+ +.++.+..+.+-|.+|.|-.
T Consensus 39 ~av~~l~~~~~~~~A-~A~DLlA~gK~~VkdTfG~gStv~~~-------i~~Aev-----i~~~v~y~~TkN~~~~~Gf~ 105 (119)
T PF05513_consen 39 VAVLALFFLALAHPA-HATDLLASGKADVKDTFGKGSTVEKW-------IYLAEV-----IVGVVMYFKTKNPMVFGGFA 105 (119)
T ss_pred HHHHHHHHHhhhhhh-hhHHHHhcccchhHhhcCCCcHHHHH-------HHHHHH-----HHHHHHHHhccChHHhhhhH
Confidence 333333333333333 45553 3444433 245544444443 334554 55566666655567888888
Q ss_pred HHHHHHHHHHHHHh
Q 025229 180 GALAAMTVISVILG 193 (256)
Q Consensus 180 lAL~lmT~LaVllG 193 (256)
+..+..++..-++|
T Consensus 106 i~iIft~Vg~~~v~ 119 (119)
T PF05513_consen 106 IVIIFTNVGFSVVG 119 (119)
T ss_pred HhHhHHHhhhhhcC
Confidence 88877776555443
No 51
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=35.76 E-value=1.2e+02 Score=28.36 Aligned_cols=85 Identities=27% Similarity=0.262 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHHHHhcCchHHHHHHHHHhccC--CchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchh
Q 025229 137 DISRGFASAFLLIFFSELGDKTFFIAALLAARNS--AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPI 214 (256)
Q Consensus 137 ~~l~aFlsAF~lIFLAELGDKTQLatalLAaR~~--~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~i 214 (256)
+.+..|+.+|+.+ +=| |=-|=+.-..+++..+ ...+..|+.+|.++..+++.++-+.. ..+|.+.
T Consensus 131 ~~~~l~~~afl~v-lRE-G~E~vLfl~a~~~~~~~~~~~~~~g~~~G~~~a~~~~~~~~~~~----~~i~~~~------- 197 (306)
T PF03239_consen 131 SKWALFLLAFLIV-LRE-GLEAVLFLAALAASLRKDAASILLGAILGIAAAVVLGWLLYRGL----IRISLRS------- 197 (306)
T ss_pred hhhHHHHHHHHHH-HHh-hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHH-------
Confidence 3556677777433 233 4445455555555433 57888899999888888888776654 3566554
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 025229 215 DDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 215 i~~iAa~LFl~FGl~tL~ea 234 (256)
.-.+.+++.++.+..++..+
T Consensus 198 ~f~~~~~~ll~~aa~L~~~~ 217 (306)
T PF03239_consen 198 FFIITGVLLLLIAAGLLGVG 217 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 52
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=33.22 E-value=1.7e+02 Score=26.02 Aligned_cols=74 Identities=12% Similarity=0.017 Sum_probs=40.2
Q ss_pred HHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccc-cccCCccccCCCchhHHHHHHHHHHHHH
Q 025229 149 IFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYV-DEILPFRFGQTDLPIDDIAAVCLLVYFG 227 (256)
Q Consensus 149 IFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i-~~~LP~r~~~~d~~ii~~iAa~LFl~FG 227 (256)
-+..++++=.++. .+..+++..++ ..+...+++-+++++|..+.+. ........ ..+..-+++..|++.+
T Consensus 211 k~~e~~~~~~~l~----~~~~~~~~~~~-~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~----~~~~~a~aaG~~lyv~ 281 (317)
T PF02535_consen 211 KIPEGFALGSILV----KAGFSKRKALL-LLLLFSLSTPIGALIGIAISNSGSSSSSDIV----SGILLAFAAGTFLYVA 281 (317)
T ss_pred HhHHHhhhhhhhh----hhccccchhhH-HHHHHHHHHHHHHHHHHHhcccCccchhHHH----HHHHHHHHHHHHHHHH
Confidence 3445555544443 33445555555 7778888999999999865100 01111110 1234556666777777
Q ss_pred HHHH
Q 025229 228 VSTL 231 (256)
Q Consensus 228 l~tL 231 (256)
+.-+
T Consensus 282 ~~el 285 (317)
T PF02535_consen 282 FVEL 285 (317)
T ss_pred HHHH
Confidence 7644
No 53
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=32.76 E-value=2.2e+02 Score=26.98 Aligned_cols=77 Identities=14% Similarity=0.018 Sum_probs=45.3
Q ss_pred HHHHHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCC--ccccCCCchhHHHHHHHHH
Q 025229 146 FLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILP--FRFGQTDLPIDDIAAVCLL 223 (256)
Q Consensus 146 F~lIFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP--~r~~~~d~~ii~~iAa~LF 223 (256)
+++++..-+|+=+.=++.++++- +|+.+.+.+..++.+.-.+.. .++.+ .++ ++..-++++++-
T Consensus 197 ~VLL~a~~lg~~~~Gi~~vlafs-------lGtaltm~~vgll~~~~~r~~---~~~~~~~~~~----~~~~p~~s~~l~ 262 (279)
T PRK10019 197 TVLLICIQLKALTLGATLVLSFS-------IGLALTLVTVGVGAAISVQQA---AKRWSGFNTL----ARRAPYFSSLLI 262 (279)
T ss_pred HHHHHHHHhchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHhhHHHH----HHHHHHHHHHHH
Confidence 44666677777666666666554 466666665555554333321 12222 122 111238999999
Q ss_pred HHHHHHHHHhhhc
Q 025229 224 VYFGVSTLLDAAS 236 (256)
Q Consensus 224 l~FGl~tL~ea~~ 236 (256)
+.+|+++.|+.+.
T Consensus 263 i~~G~~~~~~~~~ 275 (279)
T PRK10019 263 GLVGVYMGVHGFM 275 (279)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 54
>PRK04201 zinc transporter ZupT; Provisional
Probab=32.64 E-value=2.9e+02 Score=25.08 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHH
Q 025229 143 ASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCL 222 (256)
Q Consensus 143 lsAF~lIFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~L 222 (256)
+..++.|.+-|+-+-==+++.++.++.+++..+.- .....+++.+++++|..+. ...++..+ ..++.-+++..
T Consensus 152 ~~~~~aI~~H~iPeg~a~~~~l~~~~~s~~~~~~~-~~~~~l~~p~G~~~g~~~~--~~~~~~~~----~~~~l~~aaG~ 224 (265)
T PRK04201 152 FPIALAIAIHNIPEGIAVAVPVYYATGSKKKAFLY-SFLSGLAEPLGAVLGYLLL--GPFISPVV----MGAIFAAVAGI 224 (265)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHccCcHHHHHHH-HHHHHHHHHHHHHHHHHHH--ccccchhH----HHHHHHHHHHH
Confidence 56677788888877655555666666666544443 3345788888888887551 11122221 22345566677
Q ss_pred HHHHHHHHHHh
Q 025229 223 LVYFGVSTLLD 233 (256)
Q Consensus 223 Fl~FGl~tL~e 233 (256)
|++.++.-+..
T Consensus 225 ~lyv~~~el~p 235 (265)
T PRK04201 225 MVFISLDELLP 235 (265)
T ss_pred HHHHHHHHHHH
Confidence 77777765544
No 55
>COG0730 Predicted permeases [General function prediction only]
Probab=32.25 E-value=1.4e+02 Score=26.46 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=38.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~ 235 (256)
..|-.-...-+....++++.+|..+ ...+|.++ .+.+-+++.++.++++++...
T Consensus 69 ~~v~~~~~~~l~~~~~~G~~lG~~l---~~~~~~~~-------l~~~~~~~ll~~~~~~~~~~~ 122 (258)
T COG0730 69 GNVDWKLALILLLGALIGAFLGALL---ALLLPAEL-------LKLLFGLLLLLLALYMLLGPR 122 (258)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHHHHHhcc
Confidence 3455555666666668888888644 46788776 677778888889999988754
No 56
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=32.11 E-value=1.6e+02 Score=26.69 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHhccCC----chhhHHHHHHHH--HHHHHHHHHhcccccccccCCccccCCC
Q 025229 138 ISRGFASAFLLIFFSELGDKTFFIAALLAARNSA----ATVFAGTFGALA--AMTVISVILGRTFHYVDEILPFRFGQTD 211 (256)
Q Consensus 138 ~l~aFlsAF~lIFLAELGDKTQLatalLAaR~~~----~~VflGs~lAL~--lmT~LaVllG~~L~~i~~~LP~r~~~~d 211 (256)
+..-+...+..++++ ++++.++.++++ ..++.|..++++ ....++..+|. ...+|.-+
T Consensus 272 l~~R~~~p~~~l~~~-------lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-----~~~l~p~~---- 335 (354)
T PF03739_consen 272 LHKRIALPLSCLILV-------LLALPLGIRFPRSGRISSLFIALLLGFLYYILFSFFSSLGE-----NGNLPPFI---- 335 (354)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhhccccCCchHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCccHHH----
Confidence 344555555555554 566777877643 234444444333 23333333333 23455443
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 025229 212 LPIDDIAAVCLLVYFGVSTLL 232 (256)
Q Consensus 212 ~~ii~~iAa~LFl~FGl~tL~ 232 (256)
.-|+.-++|+++|+++++
T Consensus 336 ---a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 336 ---AAWLPNIIFLILGLYLLR 353 (354)
T ss_pred ---HHHHHHHHHHHHHHHHHh
Confidence 788889999999998875
No 57
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=32.02 E-value=34 Score=30.83 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=36.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAASTDGL 240 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~~~~~~ 240 (256)
..++-.+..|+.++-+........+.+. -++ .+-.++++|++.+..|+.|+....+.+.+
T Consensus 41 ~v~~ra~i~a~~ill~f~~~G~~il~~f--gIs-------i~a~rIAGGilLf~ia~~ml~~~~~~~~~ 100 (203)
T COG2095 41 RVALRASIIALLILLVFLLLGEGILRFF--GIS-------IDAFRIAGGILLFLIALRMLFGPTSRPKK 100 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCc-------hhHHHHhhhHHHHHHHHHHhcCCcCcCCC
Confidence 4555566666666655544433333211 123 23378999999999999999876554443
No 58
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=31.71 E-value=3.6e+02 Score=24.97 Aligned_cols=76 Identities=13% Similarity=0.004 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHhccCC-----chhhHHHHHHHHH--HHHHHHHHhcccccccccCCccccCCC
Q 025229 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNSA-----ATVFAGTFGALAA--MTVISVILGRTFHYVDEILPFRFGQTD 211 (256)
Q Consensus 139 l~aFlsAF~lIFLAELGDKTQLatalLAaR~~~-----~~VflGs~lAL~l--mT~LaVllG~~L~~i~~~LP~r~~~~d 211 (256)
..-+...+..+.++ ++++.++.+..+ ..+.+|..++++. ...++-.+|.. ..+|.-.
T Consensus 272 ~~r~a~Pl~~~~~~-------lla~~~~~~~~R~~~~~~~i~~~i~~~~~y~~~~~~~~~lg~~-----g~l~P~l---- 335 (356)
T PRK15071 272 WRKIFQPLSVAVMM-------LMALSFIFGPLRSVTMGARVVTGISFGFVFYVSNEIFGPLSLV-----YGIPPII---- 335 (356)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCccHHH----
Confidence 33444444444444 667777776432 2344554444433 33344445542 3466543
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 025229 212 LPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 212 ~~ii~~iAa~LFl~FGl~tL~e 233 (256)
.-|+--++|+.+|+++++.
T Consensus 336 ---aaw~P~iif~~~~~~ll~r 354 (356)
T PRK15071 336 ---GALLPSLLFLGISLYLLRR 354 (356)
T ss_pred ---HHHHHHHHHHHHHHHHHhh
Confidence 5788889999999998864
No 59
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=31.35 E-value=1.4e+02 Score=28.96 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 213 ~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
+++..++.++-+.+|+|++|....
T Consensus 131 ~~lE~~S~~Ll~~~G~w~~~r~lr 154 (303)
T COG2215 131 PWLELISFLLLILLGLWLLWRTLR 154 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999998755
No 60
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=31.35 E-value=1.4e+02 Score=26.54 Aligned_cols=24 Identities=13% Similarity=0.092 Sum_probs=20.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhh
Q 025229 211 DLPIDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 211 d~~ii~~iAa~LFl~FGl~tL~ea 234 (256)
...++..+.|++...+|+.++.++
T Consensus 177 g~~il~Ri~GliL~aIaVq~i~~G 200 (201)
T TIGR00427 177 GINVITRIMGLLLAAIAVEFIVTG 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 355688899999999999998875
No 61
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=30.54 E-value=2.5e+02 Score=23.63 Aligned_cols=90 Identities=20% Similarity=0.162 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHhccC--C---chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCch
Q 025229 139 SRGFASAFLLIFFSELGDKTFFIAALLAARNS--A---ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLP 213 (256)
Q Consensus 139 l~aFlsAF~lIFLAELGDKTQLatalLAaR~~--~---~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ 213 (256)
+.-+....++..++|..| .++...-+-|++ + +.-.+|++++.++...++.++|-++ .-.+-|.....|.+
T Consensus 30 ~~~l~~~~~l~~l~~~~d--~~~~~~~ak~~G~s~~~~~ga~iG~IvG~f~~~p~G~iiG~~~---Ga~l~El~~~~~~~ 104 (140)
T PF04306_consen 30 WWFLAILAVLALLGEVLD--YLAGAYGAKRFGASRWGIWGAIIGGIVGFFVLPPLGLIIGPFL---GAFLGELLRGKDFR 104 (140)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HHHHHHHHhCCCHH
Confidence 345666667777888877 355555566665 3 3445566677777666666666544 22222322333444
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 025229 214 IDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 214 ii~~iAa~LFl~FGl~tL~e 233 (256)
-.-..+...+..+...++.+
T Consensus 105 ~A~~~~~ga~~g~~~g~~~k 124 (140)
T PF04306_consen 105 RALRAGIGALVGFLAGTLIK 124 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666555544
No 62
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=30.18 E-value=1.4e+02 Score=25.47 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHH
Q 025229 175 FAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVS 229 (256)
Q Consensus 175 flGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~ 229 (256)
.+...+.+...+.+++.+|+.+ .+++|+++ .+.+..++.++.|+.
T Consensus 195 ~~~~~~~~~~~~~~G~~lG~~~---~~~i~~~~-------~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 195 MLLLSLILLPGAFLGAFLGAKL---ARKIPQKV-------FRRIFLILLLLSGLK 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHH
Confidence 4444555777788888888765 57788766 677767776776664
No 63
>COG0730 Predicted permeases [General function prediction only]
Probab=30.05 E-value=1.8e+02 Score=25.67 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHhhh
Q 025229 181 ALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 181 AL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~ea~ 235 (256)
.+++.++++..+|..+ .+++|++. .+.+-+.+.++.+++++++..
T Consensus 211 ~l~~g~~~G~~lG~~l---~~~~~~~~-------lr~~~~~~~~~~~~~~~~~~~ 255 (258)
T COG0730 211 LLAVGSILGAYLGARL---ARRLSPKV-------LRRLFALVLLAVAIKLLLRGL 255 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHhcCHHH-------HHHHHHHHHHHHHHHHHHHhc
Confidence 6788888899999865 46777776 788888888889999887754
No 64
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.38 E-value=1.7e+02 Score=23.88 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhcccccccccCCcc
Q 025229 180 GALAAMTVISVILGRTFHYVDEILPFR 206 (256)
Q Consensus 180 lAL~lmT~LaVllG~~L~~i~~~LP~r 206 (256)
..+++-+++++++|++| +++.|..
T Consensus 50 ~~~v~pil~G~~lG~WL---D~~~~t~ 73 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWL---DRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHH---HhhcCCC
Confidence 35667778888999865 6777654
No 65
>PF04279 IspA: Intracellular septation protein A ; InterPro: IPR006008 Intracellular septation protein A is a family of proteins which are essential for both normal cell division and bacterial virulence and are believed to play a role in the septation process [].; GO: 0016021 integral to membrane
Probab=28.57 E-value=1.4e+02 Score=26.02 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 178 TFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 178 s~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
++.+.++.+++.+...... .+.+| .+++++.++-++||..+++-
T Consensus 25 At~~~i~~~~~~v~~~~~~---~r~v~---------~~~~is~~lv~vfG~lTl~~ 68 (176)
T PF04279_consen 25 ATAVLIVATLAQVAYSWIR---RRKVP---------KMQWISLVLVLVFGGLTLLF 68 (176)
T ss_pred HHHHHHHHHHHHHHHHHHH---hCcCc---------hhHHHHHHHHHHHHHHHHHh
Confidence 4445556666666666543 23443 26788888888899887753
No 66
>PF03239 FTR1: Iron permease FTR1 family; InterPro: IPR004923 The Saccharomyces cerevisiae (Baker's yeast) iron permease FTR1 is a plasma membrane permease for high-affinity iron uptake. Also included in this family are bacterial hypothetical integral membrane proteins.; GO: 0055085 transmembrane transport, 0016020 membrane
Probab=27.68 E-value=1.1e+02 Score=28.59 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=38.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCc----hhHHHHHHHHHHHHHHHHHHhh
Q 025229 171 AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDL----PIDDIAAVCLLVYFGVSTLLDA 234 (256)
Q Consensus 171 ~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~----~ii~~iAa~LFl~FGl~tL~ea 234 (256)
+.+|+.|+.+|++++.++++.+-.... .++..+....- -++..++.++-...++||...+
T Consensus 35 ~~~V~~G~~~g~~~s~~~~~~~~~~~~----~~~~~~~~~~~e~~eg~~~liA~~li~~m~~wm~~~~ 98 (306)
T PF03239_consen 35 RRWVWLGVAAGLVASLVIGAVFAVIFY----TLSGDYWGISEELFEGAISLIAVALITWMVFWMRRHG 98 (306)
T ss_pred hheeeecHhHHHHHHHHHHHHHHHHHH----hhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998888776553 23320000000 0145566667777888887653
No 67
>COG1238 Predicted membrane protein [Function unknown]
Probab=27.49 E-value=3.4e+02 Score=23.72 Aligned_cols=90 Identities=19% Similarity=0.083 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHH
Q 025229 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA 219 (256)
Q Consensus 140 ~aFlsAF~lIFLAELGDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iA 219 (256)
..|+.+|+--.+-=++---.++.+.++- ++++.+.+=+++|-.+-++++-++|+.+ .+.+..++-.......+...
T Consensus 21 ~Lf~vaF~eat~lP~~sE~~l~~m~~~~-~~~~~~~~vAt~gs~lG~~~~y~lG~~~---~~~~~~~~~~~~~~~~~~~~ 96 (161)
T COG1238 21 GLFIVAFLEATLLPVPSEVLLAPMLLLG-LNAWILALVATLGSVLGGLVNYALGRFL---PEFIARRWFPGSEEALEKLQ 96 (161)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHcC-CchHHHHHHHHHHhhHhHHHHHHHHhcc---hHHHHHHhhcchHHHHHHHH
Confidence 3556666666666667777888888888 8888888888888888888888888865 34443321000111233444
Q ss_pred HHHHHHHHHHHHHh
Q 025229 220 VCLLVYFGVSTLLD 233 (256)
Q Consensus 220 a~LFl~FGl~tL~e 233 (256)
.-.|-=+|+|++.-
T Consensus 97 ~~~~~ryg~~~ll~ 110 (161)
T COG1238 97 EKWYRRYGVWTLLL 110 (161)
T ss_pred HHHHHHHHHHHHHH
Confidence 33555666666543
No 68
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=27.05 E-value=5.5e+02 Score=24.41 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCchH--HHHHHHHHhccCCchhhHHHHHHH---------------HHHHHHHHHHhccccccccc
Q 025229 140 RGFASAFLLIFFSELGDKT--FFIAALLAARNSAATVFAGTFGAL---------------AAMTVISVILGRTFHYVDEI 202 (256)
Q Consensus 140 ~aFlsAF~lIFLAELGDKT--QLatalLAaR~~~~~VflGs~lAL---------------~lmT~LaVllG~~L~~i~~~ 202 (256)
.+.+.+|++.++.-+..|. -.++...|.-. .+|+|++.+. ++...++|+++-++.|-...
T Consensus 93 ~g~i~glvl~lv~~F~~~~~sp~l~~~YA~~E---G~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~lYk~g~ 169 (274)
T PF12811_consen 93 VGAIGGLVLALVISFKRKVWSPALAPIYAVLE---GVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLALYKTGI 169 (274)
T ss_pred HHHHHHHHHHHHHHhCCccCChHHHHHHHHHH---HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4455667777777777664 55555555543 4666665433 34455566666666554444
Q ss_pred C
Q 025229 203 L 203 (256)
Q Consensus 203 L 203 (256)
|
T Consensus 170 I 170 (274)
T PF12811_consen 170 I 170 (274)
T ss_pred e
Confidence 4
No 69
>PRK09304 arginine exporter protein; Provisional
Probab=25.67 E-value=2e+02 Score=24.92 Aligned_cols=24 Identities=8% Similarity=0.250 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc
Q 025229 213 PIDDIAAVCLLVYFGVSTLLDAAS 236 (256)
Q Consensus 213 ~ii~~iAa~LFl~FGl~tL~ea~~ 236 (256)
++++.++|++|+++|++++.++..
T Consensus 181 ~~in~~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 181 RIINLFVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Confidence 357899999999999999988654
No 70
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=25.60 E-value=93 Score=31.52 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 025229 177 GTFGALAAMTVISVILGRTFHY 198 (256)
Q Consensus 177 Gs~lAL~lmT~LaVllG~~L~~ 198 (256)
|+..+|.++..++.++=..++|
T Consensus 195 ~v~s~lLl~a~l~~l~P~~l~~ 216 (441)
T KOG1397|consen 195 GVNSALLLLAVLGILLPTVLHY 216 (441)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666555554
No 71
>PF11915 DUF3433: Protein of unknown function (DUF3433); InterPro: IPR021840 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 784 to 1240 amino acids in length.
Probab=24.53 E-value=1.2e+02 Score=23.00 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=29.6
Q ss_pred CchHHHHHHHHHhccCCchhhHHHHHHHHHHHHHHHHHh
Q 025229 155 GDKTFFIAALLAARNSAATVFAGTFGALAAMTVISVILG 193 (256)
Q Consensus 155 GDKTQLatalLAaR~~~~~VflGs~lAL~lmT~LaVllG 193 (256)
.++..+.+..-|.|++.+.|++.++++++ ..++.++.+
T Consensus 53 ~~~~~~~~~~~alr~rh~~v~~~~~~~ll-~~~l~il~s 90 (92)
T PF11915_consen 53 LSMNPFVALFKALRNRHWLVFLSSLASLL-ASFLPILSS 90 (92)
T ss_pred CCCcchHHHHHHHHcCCcHHHHHHHHHHH-HHHHHHhhc
Confidence 45566777778888889999999888888 777777655
No 72
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=24.52 E-value=94 Score=22.82 Aligned_cols=24 Identities=17% Similarity=-0.021 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhcC
Q 025229 214 IDDIAAVCLLVYFGVSTLLDAAST 237 (256)
Q Consensus 214 ii~~iAa~LFl~FGl~tL~ea~~~ 237 (256)
++-.+.++.++.+|+|.+++++..
T Consensus 48 ~ll~~vg~gli~~gi~~~~~a~~~ 71 (73)
T PF06724_consen 48 WLLGAVGLGLIGYGIWQFVKAVYR 71 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 366788889999999999998754
No 73
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.44 E-value=1.7e+02 Score=25.04 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.5
Q ss_pred HhcCchHHHHHHHHHhc
Q 025229 152 SELGDKTFFIAALLAAR 168 (256)
Q Consensus 152 AELGDKTQLatalLAaR 168 (256)
|||-||-||.-++.=.|
T Consensus 33 a~W~DKdellDViyW~r 49 (129)
T KOG3415|consen 33 AEWPDKDELLDVIYWIR 49 (129)
T ss_pred ccCCCHHHHHHHHHHHH
Confidence 69999999988776433
No 74
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=24.24 E-value=2.3e+02 Score=23.52 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 025229 213 PIDDIAAVCLLVYFGVS 229 (256)
Q Consensus 213 ~ii~~iAa~LFl~FGl~ 229 (256)
++++.+.+++++++|++
T Consensus 168 ~~in~~~g~~l~~~~v~ 184 (185)
T TIGR00949 168 KWIDGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34788899999999976
No 75
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=24.09 E-value=2.7e+02 Score=25.10 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=43.6
Q ss_pred CchHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 155 GDKTFFIAALLAARNSA-ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 155 GDKTQLatalLAaR~~~-~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
|+-|-=+++.++.+++. ..+.+++++..++.+.+.-.....+ .+++ |.+...++..+.|++...+|+.++.+
T Consensus 122 GPg~Ist~i~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~s~~i---~r~l----G~~G~~~~~RimGllL~al~vq~i~~ 194 (203)
T COG2095 122 GPGTIATVIVLSSQYGNSKLAVVLAILLASLLTYLILLSSSRI---MRLL----GKTGLNALTRIMGLLLAALGVQMILD 194 (203)
T ss_pred CcHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566667777651 2333333333333344333333322 2333 33455668889999999999999988
Q ss_pred hhc
Q 025229 234 AAS 236 (256)
Q Consensus 234 a~~ 236 (256)
+.+
T Consensus 195 Gl~ 197 (203)
T COG2095 195 GLR 197 (203)
T ss_pred HHH
Confidence 764
No 76
>PRK10621 hypothetical protein; Provisional
Probab=22.98 E-value=2.5e+02 Score=25.21 Aligned_cols=51 Identities=18% Similarity=0.081 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHHHh
Q 025229 173 TVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 173 ~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL~e 233 (256)
.|=.-...-+++..++++.+|..+ ...+|+++ .+++-+++.++.++++++.
T Consensus 74 ~v~~~~~~~l~~~~l~Ga~~G~~l---~~~l~~~~-------l~~~~~~~ll~~~~~~l~~ 124 (266)
T PRK10621 74 VVNLADQKLNIAMTFVGSMSGALL---VQYVQADI-------LRQILPILVIGIGLYFLLM 124 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH---HHhCCHHH-------HHHHHHHHHHHHHHHHHHC
Confidence 344455556677788888888755 56788776 7777777778888888754
No 77
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=22.81 E-value=4.6e+02 Score=24.17 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHhc-cC--CchhhHHHHHHHHHHHHHHHHHhcccccccccCCcc
Q 025229 142 FASAFLLIFFSELGDKTFFIAALLAAR-NS--AATVFAGTFGALAAMTVISVILGRTFHYVDEILPFR 206 (256)
Q Consensus 142 FlsAF~lIFLAELGDKTQLatalLAaR-~~--~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r 206 (256)
|..-++..+++.+||.+...++..-.+ .+ ...+-.....-.+...+...+.|.+ .++...|
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~l----aDr~grr 68 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAF----ADSFPKG 68 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHh----hhccCCc
Confidence 344455677777888776554443333 22 2222222333334444555566643 3455544
No 78
>PRK10958 leucine export protein LeuE; Provisional
Probab=21.13 E-value=4e+02 Score=23.24 Aligned_cols=20 Identities=15% Similarity=-0.012 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 025229 214 IDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 214 ii~~iAa~LFl~FGl~tL~e 233 (256)
+++.+.|++|+.+|++++.+
T Consensus 191 ~i~~~~g~~l~~~~i~l~~~ 210 (212)
T PRK10958 191 GGNSLVGLLFVGFAAKLATA 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999988653
No 79
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=20.84 E-value=1.4e+02 Score=30.54 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHHHHHHHHHHHHHH
Q 025229 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAAVCLLVYFGVSTL 231 (256)
Q Consensus 174 VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iAa~LFl~FGl~tL 231 (256)
-.+|.++.+.+..+++.++|..++ ..+ +-|++.++.+++|+++|+.++
T Consensus 215 y~lG~~~ty~~lG~~a~~~G~~~~---~~~-------q~~~~~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 215 YVQGMALTYTLLGLVVAAAGLQFQ---AAL-------QHPYVLIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHh-------hhHHHHHHHHHHHHHHHHHHh
Confidence 345777777777777777776542 111 112467888899999999885
No 80
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=20.79 E-value=4.5e+02 Score=24.49 Aligned_cols=16 Identities=0% Similarity=-0.211 Sum_probs=8.0
Q ss_pred CchhhHHHHHHHHHHH
Q 025229 171 AATVFAGTFGALAAMT 186 (256)
Q Consensus 171 ~~~VflGs~lAL~lmT 186 (256)
.|-.++.+.+++++.-
T Consensus 161 ~~K~~lv~~~sm~lWi 176 (226)
T COG4858 161 TWKYLLVAVLSMLLWI 176 (226)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3545555555555443
No 81
>PRK10229 threonine efflux system; Provisional
Probab=20.52 E-value=1.4e+02 Score=25.59 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 025229 213 PIDDIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 213 ~ii~~iAa~LFl~FGl~tL~e 233 (256)
++++.++|++++.+|++++.+
T Consensus 185 ~~in~~~g~~li~~~i~l~~~ 205 (206)
T PRK10229 185 KWIDGFAGALFAGFGIHLIIS 205 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999998864
No 82
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=20.39 E-value=5.7e+02 Score=23.87 Aligned_cols=80 Identities=20% Similarity=0.164 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhc---CchHHHHHHHHH---hccCCchhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHH
Q 025229 143 ASAFLLIFFSEL---GDKTFFIAALLA---ARNSAATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDD 216 (256)
Q Consensus 143 lsAF~lIFLAEL---GDKTQLatalLA---aR~~~~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~ 216 (256)
+.++.+.++-|. +|+-.+++++.. .++++...+.|..+|+++-.++-.. |.++ -+ ++. +.-
T Consensus 17 ~~~l~tl~~lE~vL~iDN~iviai~~~~Lp~~qr~ral~~Gl~~A~v~R~~ll~~-~s~L---l~-l~~--------~l~ 83 (254)
T COG0861 17 WVALLTLILLEIVLGIDNAIVIAILASKLPPKQRKKALFIGLAGALVLRIILLAS-ISWL---LT-LTQ--------PLL 83 (254)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HH-hhH--------HHH
Confidence 356767777775 899888776532 1234578889998888776655444 4433 11 221 123
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 025229 217 IAAVCLLVYFGVSTLLDAA 235 (256)
Q Consensus 217 ~iAa~LFl~FGl~tL~ea~ 235 (256)
++.|..++.-++.+++++.
T Consensus 84 ~~fg~~L~~~~~~ll~~~~ 102 (254)
T COG0861 84 YIFGLYLLWRDIKLLLGGL 102 (254)
T ss_pred HHHHHHHHHHHHHHHhcch
Confidence 4456667777777776643
No 83
>COG0795 Predicted permeases [General function prediction only]
Probab=20.29 E-value=3.5e+02 Score=25.15 Aligned_cols=78 Identities=19% Similarity=0.204 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHhccCC----chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhH
Q 025229 140 RGFASAFLLIFFSELGDKTFFIAALLAARNSA----ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPID 215 (256)
Q Consensus 140 ~aFlsAF~lIFLAELGDKTQLatalLAaR~~~----~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii 215 (256)
.-+...|..+.++ ++++.++.++++ ....+++++.-++--++..+++... ....+|.-+ .
T Consensus 279 ~r~a~pl~~~~~~-------lla~~l~~~~~R~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~l~p~~-------a 342 (364)
T COG0795 279 RRLALPLLVLAMA-------LLALPLSLRNPRSGRLGLRLLGGILLGLLFYVLLFLLGALA--LAGKLPPFL-------A 342 (364)
T ss_pred HHHHHHHHHHHHH-------HHHHHHhhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcCHHH-------H
Confidence 4444455555443 667778877654 2222333222222233333333322 134455443 6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025229 216 DIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 216 ~~iAa~LFl~FGl~tL~e 233 (256)
-|+-.++|+..|+|.++.
T Consensus 343 ~~~p~~i~l~~~~~l~~~ 360 (364)
T COG0795 343 AWLPNLVFLALGLWLLRR 360 (364)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 788888999999998764
Done!