Query 025229
Match_columns 256
No_of_seqs 156 out of 1138
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 06:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 40.3 48 0.0016 26.6 5.4 16 218-233 88-103 (137)
2 2lx0_A Membrane fusion protein 25.4 64 0.0022 20.5 3.0 17 216-232 11-27 (32)
3 2knc_A Integrin alpha-IIB; tra 18.1 61 0.0021 22.9 1.9 16 218-233 20-35 (54)
4 2zy9_A Mg2+ transporter MGTE; 15.7 3E+02 0.01 25.6 6.6 60 172-231 407-468 (473)
5 1p7a_A BF3, BKLF, kruppel-like 12.7 1.3E+02 0.0043 16.5 2.1 20 9-28 1-20 (37)
6 3s8f_A Cytochrome C oxidase su 12.6 3.9E+02 0.013 26.3 6.7 21 172-193 433-453 (569)
7 2l8s_A Integrin alpha-1; trans 12.5 1.8E+02 0.006 20.6 3.1 18 216-233 15-32 (54)
8 2epx_A Zinc finger protein 28 10.3 1.7E+02 0.0059 16.9 2.2 20 8-27 1-20 (47)
9 3arc_J Photosystem II reaction 9.3 3.3E+02 0.011 18.2 3.4 18 175-192 12-29 (40)
10 1btq_A BAND 3 anion transport 8.1 1.8E+02 0.0061 17.7 1.6 14 217-230 2-15 (26)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=40.29 E-value=48 Score=26.57 Aligned_cols=16 Identities=19% Similarity=0.094 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 025229 218 AAVCLLVYFGVSTLLD 233 (256)
Q Consensus 218 iAa~LFl~FGl~tL~e 233 (256)
+.|+++++.|+..+..
T Consensus 88 ~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 88 IIGMMLICAGVLIINL 103 (137)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4567778999988743
No 2
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.43 E-value=64 Score=20.48 Aligned_cols=17 Identities=18% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025229 216 DIAAVCLLVYFGVSTLL 232 (256)
Q Consensus 216 ~~iAa~LFl~FGl~tL~ 232 (256)
-.++-..|+.||+|+..
T Consensus 11 glvalltflafgfwlfk 27 (32)
T 2lx0_A 11 GLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556679999999763
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=18.07 E-value=61 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 025229 218 AAVCLLVYFGVSTLLD 233 (256)
Q Consensus 218 iAa~LFl~FGl~tL~e 233 (256)
++|++.+..-+..||.
T Consensus 20 l~GLllL~li~~~LwK 35 (54)
T 2knc_A 20 LGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555544555555
No 4
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=15.66 E-value=3e+02 Score=25.60 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCchhHHHHH--HHHHHHHHHHHH
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLPIDDIAA--VCLLVYFGVSTL 231 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~ii~~iA--a~LFl~FGl~tL 231 (256)
+.+.+-..+++++..+++.++|..+.++..++-..-.--.-|.++-+. ..+|++||+-++
T Consensus 407 ~~~~~~v~~a~~~~~~~a~~~g~~~p~~~~~~~~DPa~~s~p~itt~~D~~g~~~~~~~a~~ 468 (473)
T 2zy9_A 407 PLLLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTGLLIYLSVARL 468 (473)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 344445566777778888888988766555442211111223322221 235667776544
No 5
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=12.72 E-value=1.3e+02 Score=16.52 Aligned_cols=20 Identities=10% Similarity=0.150 Sum_probs=14.2
Q ss_pred cccccccCCCCCCCCCCCCC
Q 025229 9 SGLKAHSLPSSASYPKASKS 28 (256)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ 28 (256)
++.+.|.-..|+.|+.-.|.
T Consensus 1 ~H~~~h~~~k~~~C~~C~k~ 20 (37)
T 1p7a_A 1 GSTRGSTGIKPFQCPDCDRS 20 (37)
T ss_dssp CCSSTTCCSSSBCCTTTCCC
T ss_pred CCCCcCCCCCCccCCCCCcc
Confidence 35677888888888865553
No 6
>3s8f_A Cytochrome C oxidase subunit 1; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 3s8g_A* 1xme_A* 3qjq_A* 3qjr_A* 3qju_A* 3qjv_A* 3s33_A* 3s38_A* 3s39_A* 3s3a_A* 3s3b_A* 3s3c_A* 3s3d_A* 4esl_A* 4f05_A* 4fa7_A* 3qjs_A* 2qpd_A* 3bvd_A* 2qpe_A* ...
Probab=12.63 E-value=3.9e+02 Score=26.27 Aligned_cols=21 Identities=10% Similarity=0.075 Sum_probs=16.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHh
Q 025229 172 ATVFAGTFGALAAMTVISVILG 193 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG 193 (256)
|..++|..+-.+-++.++.. |
T Consensus 433 wl~fiG~~l~f~pmh~lGl~-G 453 (569)
T 3s8f_A 433 WLWFLGMMIMAVGLHWAGLL-N 453 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHHHhccc-c
Confidence 56788888888888888877 6
No 7
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=12.45 E-value=1.8e+02 Score=20.59 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025229 216 DIAAVCLLVYFGVSTLLD 233 (256)
Q Consensus 216 ~~iAa~LFl~FGl~tL~e 233 (256)
-.++|++.+..-+..||.
T Consensus 15 svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 15 SAFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555665
No 8
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=10.26 E-value=1.7e+02 Score=16.88 Aligned_cols=20 Identities=10% Similarity=-0.144 Sum_probs=15.1
Q ss_pred ccccccccCCCCCCCCCCCC
Q 025229 8 WSGLKAHSLPSSASYPKASK 27 (256)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (256)
+++.+.|.-..|+.|+.=.|
T Consensus 1 ~~H~~~H~~~k~~~C~~C~k 20 (47)
T 2epx_A 1 GSSGSSGTGKKPYECIECGK 20 (47)
T ss_dssp CCCCCCCCCCCSBCCSSSCC
T ss_pred CccccccCCCCCEECCccCc
Confidence 46788898888888876544
No 9
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=9.25 E-value=3.3e+02 Score=18.25 Aligned_cols=18 Identities=6% Similarity=0.418 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025229 175 FAGTFGALAAMTVISVIL 192 (256)
Q Consensus 175 flGs~lAL~lmT~LaVll 192 (256)
++|++.++.+..++++++
T Consensus 12 lvgtv~G~~vi~~~giFf 29 (40)
T 3arc_J 12 IVATVAGMGVIVIVGLFF 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeeehhhhhhheeeEEE
Confidence 368888888888877764
No 10
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=8.07 E-value=1.8e+02 Score=17.69 Aligned_cols=14 Identities=21% Similarity=0.645 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHH
Q 025229 217 IAAVCLLVYFGVST 230 (256)
Q Consensus 217 ~iAa~LFl~FGl~t 230 (256)
.+++++|++|+...
T Consensus 2 ~laa~~FlyFa~l~ 15 (26)
T 1btq_A 2 VLAAVIFIYFAALS 15 (26)
T ss_pred hHHHHHHHHHHHHc
Confidence 46788999998754
Done!