Query 025229
Match_columns 256
No_of_seqs 156 out of 1138
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 06:13:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025229.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025229hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kqfb2 f.23.22.1 (B:246-290) 14.5 35 0.0026 21.8 1.6 17 215-231 12-28 (45)
2 d2oara1 f.16.1.1 (A:10-118) Ga 12.2 80 0.0058 22.9 3.3 9 183-191 29-37 (109)
3 d1q90g_ f.23.26.1 (G:) PetG su 12.0 86 0.0062 18.4 2.7 24 174-197 5-28 (30)
4 d2yvxa3 f.57.1.1 (A:276-448) M 11.8 1.8E+02 0.013 22.2 5.6 55 174-230 111-169 (173)
5 d1zuea1 g.9.1.1 (A:1-42) Defen 8.9 38 0.0028 21.2 0.3 11 70-80 31-41 (42)
6 d1q90m_ f.23.25.1 (M:) PetM su 7.7 1.6E+02 0.011 17.4 2.8 23 174-196 4-26 (34)
7 d2axtj1 f.23.32.1 (J:7-40) Pho 6.8 1.9E+02 0.014 17.2 2.9 18 175-192 6-23 (34)
8 d1dnva_ b.121.5.3 (A:) Densovi 5.0 55 0.004 29.3 -0.7 34 31-67 69-102 (415)
9 d2mrba_ g.46.1.1 (A:) Metallot 4.9 1.4E+02 0.01 17.4 1.3 24 62-85 5-28 (31)
10 d1y5ic1 f.21.3.1 (C:1-225) Res 4.2 3.3E+02 0.024 20.7 3.6 25 172-196 89-113 (225)
No 1
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=14.55 E-value=35 Score=21.83 Aligned_cols=17 Identities=6% Similarity=-0.216 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025229 215 DDIAAVCLLVYFGVSTL 231 (256)
Q Consensus 215 i~~iAa~LFl~FGl~tL 231 (256)
.+.++.+.|..-.+..+
T Consensus 12 ~Kpl~~~~~~~~~~~~~ 28 (45)
T d1kqfb2 12 LKPLAAAGFIATFAGLI 28 (45)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555544444333
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.19 E-value=80 Score=22.89 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 025229 183 AAMTVISVI 191 (256)
Q Consensus 183 ~lmT~LaVl 191 (256)
++|=+++.+
T Consensus 29 iimPlIg~i 37 (109)
T d2oara1 29 IITPLINRI 37 (109)
T ss_dssp HHHHHHHHH
T ss_pred hhcchHhhc
Confidence 344444443
No 3
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.02 E-value=86 Score=18.35 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccc
Q 025229 174 VFAGTFGALAAMTVISVILGRTFH 197 (256)
Q Consensus 174 VflGs~lAL~lmT~LaVllG~~L~ 197 (256)
...|.++|++-.|+.+.++-..++
T Consensus 5 ll~GivlGlipiTl~Glfv~AylQ 28 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGLFVTAYLQ 28 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHH
Confidence 456888888888888877766554
No 4
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=11.83 E-value=1.8e+02 Score=22.23 Aligned_cols=55 Identities=16% Similarity=0.309 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcccccccccCCccccCCCch----hHHHHHHHHHHHHHHHH
Q 025229 174 VFAGTFGALAAMTVISVILGRTFHYVDEILPFRFGQTDLP----IDDIAAVCLLVYFGVST 230 (256)
Q Consensus 174 VflGs~lAL~lmT~LaVllG~~L~~i~~~LP~r~~~~d~~----ii~~iAa~LFl~FGl~t 230 (256)
+..-...++++..+++.++|..++.+.+++-.+-...+-| +.++.+ ++++||+-+
T Consensus 111 l~~vi~~sl~~~~~ia~~~G~~lPlll~klg~DPA~aS~P~itti~Di~g--~~iyf~iA~ 169 (173)
T d2yvxa3 111 LLPVVGVSLVLIVFFANLVGAMLPFLLRRLGVDPALVSNPLVATLSDVTG--LLIYLSVAR 169 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCGGGSCSTTHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHHHHHHH--HHHHHHHHH
Confidence 4445568888999999999998877766663332222223 234455 455555543
No 5
>d1zuea1 g.9.1.1 (A:1-42) Defensin-like peptide, DLP {Duckbilled platypus (Ornithorhynchus anatinus), DLP-2 [TaxId: 9258]}
Probab=8.87 E-value=38 Score=21.21 Aligned_cols=11 Identities=55% Similarity=1.035 Sum_probs=8.4
Q ss_pred cccccCCcccc
Q 025229 70 SCENRNDVDCK 80 (256)
Q Consensus 70 ~~~~~~~~~~~ 80 (256)
-|||+|.+-|+
T Consensus 31 ycen~nq~cc~ 41 (42)
T d1zuea1 31 YCENRNQKCCE 41 (42)
T ss_dssp BCSSTTEEEEC
T ss_pred eecCCCccccc
Confidence 47999987764
No 6
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=7.73 E-value=1.6e+02 Score=17.45 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhccc
Q 025229 174 VFAGTFGALAAMTVISVILGRTF 196 (256)
Q Consensus 174 VflGs~lAL~lmT~LaVllG~~L 196 (256)
.++|+..-++-||+++..+|-.+
T Consensus 4 fiagta~tmig~tl~glaigfvl 26 (34)
T d1q90m_ 4 FIAGTALTMVGMTLVGLAIGFVL 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecchhHHHHHHHHHHHHHHHhh
Confidence 35688888888888888888654
No 7
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.83 E-value=1.9e+02 Score=17.20 Aligned_cols=18 Identities=6% Similarity=0.418 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 025229 175 FAGTFGALAAMTVISVIL 192 (256)
Q Consensus 175 flGs~lAL~lmT~LaVll 192 (256)
++|++.++.+.+++++++
T Consensus 6 lv~tv~G~~vi~~vG~Ff 23 (34)
T d2axtj1 6 IVATVAGMGVIVIVGLFF 23 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred EeeehhhhhhHhheeeee
Confidence 458888888888887765
No 8
>d1dnva_ b.121.5.3 (A:) Densovirus capsid protein {Galleria mellonella densovirus [TaxId: 37138]}
Probab=5.02 E-value=55 Score=29.30 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=27.9
Q ss_pred cccccCCccccccCCCcccccccCCcchhhhhhhcCC
Q 025229 31 SKLFPFNSLCKNQTSTSKKLSLRNPYLNFSRELCRDP 67 (256)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (256)
+.++|.-++|++- +.|.-.||||+.|.--+....
T Consensus 69 F~lLP~Gs~v~e~---~vkvv~rn~RiAFeTnSS~T~ 102 (415)
T d1dnva_ 69 FDLLPPGSRVVEC---NVKVIFRTNRIAFETSSTVTK 102 (415)
T ss_dssp HHTCCTTCBCCCE---EEEEEEEEEEECCCCSCTTSC
T ss_pred HhhcCCCceEEEE---EEEEEEecCeeEEEecCcccc
Confidence 4489999999988 899999999999976655433
No 9
>d2mrba_ g.46.1.1 (A:) Metallothionein {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.87 E-value=1.4e+02 Score=17.36 Aligned_cols=24 Identities=42% Similarity=0.809 Sum_probs=16.3
Q ss_pred hhhcCCCCcccccCCccccccccc
Q 025229 62 ELCRDPGASCENRNDVDCKNCKMT 85 (256)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (256)
+++.--|+||.-.++-.|+.+|-+
T Consensus 5 cscaaagdsc~ca~sctck~ckct 28 (31)
T d2mrba_ 5 CSCAAAGDSCTCANSCTCKACKCT 28 (31)
T ss_dssp CCCCCSSSCCCCSSCCCCSSCCCT
T ss_pred ccccccCCcccccCceeecceeee
Confidence 455566788877777677776654
No 10
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=4.24 E-value=3.3e+02 Score=20.74 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=18.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhccc
Q 025229 172 ATVFAGTFGALAAMTVISVILGRTF 196 (256)
Q Consensus 172 ~~VflGs~lAL~lmT~LaVllG~~L 196 (256)
...++|.+.|+++..++..++=|.+
T Consensus 89 ~~~~~g~i~g~l~liG~~~ll~RR~ 113 (225)
T d1y5ic1 89 MAMFAGGASGVLCLIGGVLLLKRRL 113 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888877777777776654
Done!