Query 025233
Match_columns 256
No_of_seqs 141 out of 1340
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:51:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025233.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025233hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 3.7E-71 8E-76 472.1 21.7 247 4-253 74-320 (321)
2 KOG0819 Annexin [Intracellular 100.0 1.1E-53 2.3E-58 364.9 21.3 223 16-253 14-245 (321)
3 PF00191 Annexin: Annexin; In 99.7 8.3E-18 1.8E-22 114.9 8.4 66 183-249 1-66 (66)
4 PF00191 Annexin: Annexin; In 99.7 4.9E-18 1.1E-22 116.1 6.9 66 22-88 1-66 (66)
5 smart00335 ANX Annexin repeats 99.5 3E-14 6.5E-19 92.9 5.8 53 35-88 1-53 (53)
6 smart00335 ANX Annexin repeats 99.4 3.4E-13 7.4E-18 87.9 6.1 53 196-249 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 60.8 11 0.00023 25.3 2.8 30 206-235 17-46 (65)
8 PF14003 YlbE: YlbE-like prote 51.9 20 0.00042 24.0 2.9 33 41-73 13-45 (65)
9 PF13720 Acetyltransf_11: Udp 40.5 24 0.00051 24.8 2.1 21 47-67 27-47 (83)
10 PF09888 DUF2115: Uncharacteri 35.5 2.3E+02 0.005 22.6 7.5 77 40-117 9-92 (163)
11 KOG0859 Synaptobrevin/VAMP-lik 30.9 1.2E+02 0.0026 25.2 4.9 47 135-181 76-123 (217)
12 PF10788 DUF2603: Protein of u 30.7 71 0.0015 24.8 3.4 37 139-175 65-101 (137)
13 PF13801 Metal_resist: Heavy-m 28.9 1E+02 0.0022 22.1 4.1 88 41-140 35-124 (125)
14 KOG2286 Exocyst complex subuni 27.7 4.5E+02 0.0098 26.1 9.1 203 21-254 236-451 (667)
15 COG4800 Predicted transcriptio 26.2 2.3E+02 0.005 22.1 5.5 63 187-252 45-123 (170)
16 cd00171 Sec7 Sec7 domain; Doma 25.9 3E+02 0.0064 22.3 6.6 52 18-73 32-86 (185)
17 smart00717 SANT SANT SWI3, AD 24.0 1.6E+02 0.0034 17.0 4.9 35 21-55 6-41 (49)
18 KOG2543 Origin recognition com 23.5 1.6E+02 0.0034 27.3 4.8 80 106-189 246-326 (438)
19 PF13758 Prefoldin_3: Prefoldi 23.0 3.1E+02 0.0067 20.0 5.8 47 10-56 19-72 (99)
20 KOG4329 DNA-binding protein [G 22.1 1.3E+02 0.0029 27.3 4.0 58 165-231 244-301 (445)
21 PF00249 Myb_DNA-binding: Myb- 21.7 2E+02 0.0042 17.3 5.6 34 21-54 6-41 (48)
22 PF11159 DUF2939: Protein of u 21.4 3E+02 0.0066 19.4 6.1 69 12-88 5-73 (95)
23 KOG0859 Synaptobrevin/VAMP-lik 20.0 1.2E+02 0.0025 25.2 3.0 37 210-247 76-112 (217)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-71 Score=472.14 Aligned_cols=247 Identities=37% Similarity=0.566 Sum_probs=243.9
Q ss_pred ChhhHHHHHHHHcCCChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhhcCCCCchHHH
Q 025233 4 FLPKNCAALDVWMLGSHERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQK 83 (256)
Q Consensus 4 ~~~~~~~~l~~~~~~~~~~da~~L~~A~kg~g~de~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~~~~sG~~~~ 83 (256)
++|+|++++++|+.||+++||++|++||||.||||++||||+|+|||.|+++|+++|+..|+++|++||. +++||+|++
T Consensus 74 LsG~Fe~~i~al~~~p~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~-s~TSG~frk 152 (321)
T KOG0819|consen 74 LSGDFERAIVALMKPPAEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIA-SDTSGDFRK 152 (321)
T ss_pred hCccHHHHHHHHcCCHHHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhh-hccCchHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhccccCCcccchhhHHHHHHHHHHhcCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHHHHhCCChHHHhhccCC
Q 025233 84 ILVALATSHKAHNADVSQHVAKCDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNS 163 (256)
Q Consensus 84 ll~~l~~~~r~e~~~v~~~~~~~Da~~L~~A~~g~~G~td~~~li~il~~rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~~ 163 (256)
+|+.|+++.|+|+..||..+++.||+.|++|++++|| ||+..++.||++||.+||+.+++.|++.+|+++++.|+.+++
T Consensus 153 lLv~L~~~~R~e~~~vd~~la~~dA~~L~~Age~k~g-tde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~ 231 (321)
T KOG0819|consen 153 LLVSLVQGNRDEGDRVDDALAKQDAQDLYEAGEKKWG-TDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFS 231 (321)
T ss_pred HHHHHHhcCCccCCCcCHHHHHHHHHHHHHHhhhhcc-CcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccC
Confidence 9999999999988899999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhhCCchHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCccHHHHhhccCCChHHH
Q 025233 164 TDFEDALKMVVKCILNPPNYYAKTLYASIKGTRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYR 243 (256)
Q Consensus 164 g~~~~~l~~l~~~~~~~~~~~A~~L~~a~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~ 243 (256)
|+++.+|+++++|.+|||.|||+.||.||+|.|||+.+||||+|+|||+||..|+.+|+++||+||.++|+.+ |||||+
T Consensus 232 gd~~~~llaiv~c~~n~~~yFA~~L~~amkg~GTdd~~LiRI~VsRsEiDl~~Ik~ef~~~Y~ksL~~~I~~d-tsGdY~ 310 (321)
T KOG0819|consen 232 GDFEKLLLAIVKCIRNPPAYFAERLRKAMKGLGTDDKTLIRIVVSRSEIDLLDIKEEFQRKYGKSLYSAIKGD-TSGDYK 310 (321)
T ss_pred chHHHHHHHHHHHHcCHHHHHHHHHHHHHhccCCCccceeeeeeeHHHhhHHHHHHHHHHHhCccHHHHHhhh-ccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHHHHHhccc
Q 025233 244 DFLVALATKA 253 (256)
Q Consensus 244 ~~Ll~ll~~~ 253 (256)
++|++||+++
T Consensus 311 ~~LlaL~g~~ 320 (321)
T KOG0819|consen 311 KALLALLGGD 320 (321)
T ss_pred HHHHHHhCCC
Confidence 9999999975
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-53 Score=364.93 Aligned_cols=223 Identities=24% Similarity=0.382 Sum_probs=213.1
Q ss_pred cCCChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhhcCCCCchHHHHHHHHhhccccC
Q 025233 16 MLGSHERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQKILVALATSHKAH 95 (256)
Q Consensus 16 ~~~~~~~da~~L~~A~kg~g~de~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~~~~sG~~~~ll~~l~~~~r~e 95 (256)
..+.|..||+.|++|++|+||||+.||+||++|||.|||.|+++|+..||+||.++++ +++||+|++++++|+.+|
T Consensus 14 ~~f~p~~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkDLi~~Lk-~ELsG~Fe~~i~al~~~p--- 89 (321)
T KOG0819|consen 14 PVFDPVQDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKDLIKDLK-SELSGDFERAIVALMKPP--- 89 (321)
T ss_pred CCCChHHHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHHHHHHHH-HHhCccHHHHHHHHcCCH---
Confidence 3457899999999999999999999999999999999999999999999999999999 999999999999999986
Q ss_pred CcccchhhHHHHHHHHHHhcCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHHHHhCCChHHHhhccCCCcHHHHHHHHHH
Q 025233 96 NADVSQHVAKCDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKMVVK 175 (256)
Q Consensus 96 ~~~v~~~~~~~Da~~L~~A~~g~~G~td~~~li~il~~rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~l~~ 175 (256)
+++||..|++|++|. | ||++++|||+|+|||.|++.|+++|+..|+++|+++|.+++||+|+++|+.+++
T Consensus 90 --------~~~DA~~l~~amkg~-g-tde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv~L~~ 159 (321)
T KOG0819|consen 90 --------AEYDAKELKKAMKGL-G-TDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLVSLVQ 159 (321)
T ss_pred --------HHhHHHHHHHHHhcc-C-cchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHHHHHh
Confidence 689999999999998 5 999999999999999999999999999999999999999999999999999999
Q ss_pred hhCC--------chHHHHHHHHHhhcC-CCCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCccHHHHhhccCCChHHHHHH
Q 025233 176 CILN--------PPNYYAKTLYASIKG-TRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFL 246 (256)
Q Consensus 176 ~~~~--------~~~~~A~~L~~a~~g-~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~L 246 (256)
+.|+ .+..||..|++|.++ +|||+..+++||++||..||+.+.++|++.+|+++++.|+++ .+|+|+++|
T Consensus 160 ~~R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e-~~gd~~~~l 238 (321)
T KOG0819|consen 160 GNRDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEE-FSGDFEKLL 238 (321)
T ss_pred cCCccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhc-cCchHHHHH
Confidence 9885 256899999999885 689999999999999999999999999999999999999999 599999999
Q ss_pred HHHhccc
Q 025233 247 VALATKA 253 (256)
Q Consensus 247 l~ll~~~ 253 (256)
++++.+.
T Consensus 239 laiv~c~ 245 (321)
T KOG0819|consen 239 LAIVKCI 245 (321)
T ss_pred HHHHHHH
Confidence 9999874
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.74 E-value=8.3e-18 Score=114.91 Aligned_cols=66 Identities=35% Similarity=0.632 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCccHHHHhhccCCChHHHHHHHHH
Q 025233 183 YYAKTLYASIKGTRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVAL 249 (256)
Q Consensus 183 ~~A~~L~~a~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~l 249 (256)
+||+.|++|++|+|+|+..+++|+++||+.|+..|+++|++.||++|+++|+++ ++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e-~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKE-TSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHH-STHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHh-CCHHHHHHHHhC
Confidence 589999999999999999999999999999999999999999999999999999 699999999986
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.74 E-value=4.9e-18 Score=116.07 Aligned_cols=66 Identities=36% Similarity=0.547 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhhcCCCCchHHHHHHHH
Q 025233 22 RDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQKILVAL 88 (256)
Q Consensus 22 ~da~~L~~A~kg~g~de~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~~~~sG~~~~ll~~l 88 (256)
+||+.|++|++|+|+|+..+++|+|+||+.|+++|+++|+..||++|+++|+ ++++|+|+++|++|
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~-~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIK-KETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHH-HHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHH-HhCCHHHHHHHHhC
Confidence 5999999999999999999999999999999999999999999999999999 99999999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.51 E-value=3e-14 Score=92.93 Aligned_cols=53 Identities=42% Similarity=0.664 Sum_probs=51.1
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhhcCCCCchHHHHHHHH
Q 025233 35 VVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQKILVAL 88 (256)
Q Consensus 35 g~de~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~~~~sG~~~~ll~~l 88 (256)
||||..|++|+|+||+.|+++|+++|+..||++|.++|+ ++++|+|++++++|
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~-~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIK-SETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHH-HhcChHHHHHHHhC
Confidence 689999999999999999999999999999999999999 99999999998764
No 6
>smart00335 ANX Annexin repeats.
Probab=99.43 E-value=3.4e-13 Score=87.90 Aligned_cols=53 Identities=34% Similarity=0.677 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCccHHHHhhccCCChHHHHHHHHH
Q 025233 196 RVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVAL 249 (256)
Q Consensus 196 gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~l 249 (256)
|||+..|++|+++|++.|+..|+.+|++.||++|+++|+++ ++|+|+++|+++
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e-~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSE-TSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHh-cChHHHHHHHhC
Confidence 69999999999999999999999999999999999999999 699999999875
No 7
>PF14003 YlbE: YlbE-like protein
Probab=60.79 E-value=11 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHhCCHHHHHHHHHHHHHhcCccHHHHhhc
Q 025233 206 LVSRAEVDMDEIQRIFKKKYGMELRDAICE 235 (256)
Q Consensus 206 l~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~ 235 (256)
..+|.|.++.+...++...|++++-+.|.+
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT~p~rVek 46 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKTIPHRVEK 46 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 346899999999999999999999999997
No 8
>PF14003 YlbE: YlbE-like protein
Probab=51.95 E-value=20 Score=24.05 Aligned_cols=33 Identities=9% Similarity=0.284 Sum_probs=29.7
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhh
Q 025233 41 LIEILVGRKSSHIALIKQAYQTRYKRHLDQDIA 73 (256)
Q Consensus 41 li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~ 73 (256)
..-...+|+|.++.....++...|++.+.+.|.
T Consensus 13 ~WYR~LsR~P~~l~~fe~~a~~~y~kT~p~rVe 45 (65)
T PF14003_consen 13 IWYRILSRNPEELEAFEKEAKHFYKKTIPHRVE 45 (65)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhccccHHHH
Confidence 444567999999999999999999999999998
No 9
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=40.52 E-value=24 Score=24.77 Aligned_cols=21 Identities=19% Similarity=0.480 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHHHHHhhccC
Q 025233 47 GRKSSHIALIKQAYQTRYKRH 67 (256)
Q Consensus 47 ~rs~~~~~~i~~~Y~~~~~~~ 67 (256)
.-+++++..|+++|+.+|...
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~ 47 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSG 47 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHhCC
Confidence 357889999999999999753
No 10
>PF09888 DUF2115: Uncharacterized protein conserved in archaea (DUF2115); InterPro: IPR019215 This entry represents various hypothetical archaeal proteins, has no known function.
Probab=35.53 E-value=2.3e+02 Score=22.62 Aligned_cols=77 Identities=9% Similarity=-0.018 Sum_probs=42.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH-------hhccCHHHHhhcCCCCchHHHHHHHHhhccccCCcccchhhHHHHHHHHH
Q 025233 40 ALIEILVGRKSSHIALIKQAYQT-------RYKRHLDQDIANIEPPHPYQKILVALATSHKAHNADVSQHVAKCDAKRLY 112 (256)
Q Consensus 40 ~li~il~~rs~~~~~~i~~~Y~~-------~~~~~L~~~i~~~~~sG~~~~ll~~l~~~~r~e~~~v~~~~~~~Da~~L~ 112 (256)
.|-+.+...|..+++.|+..+.. .|.+.+...+. ....|-+..+...--.+...+...+|..........+.
T Consensus 9 ~Lk~~~~~~si~DL~~i~~~l~~~~~~lp~~Yr~~~~~~~~-~~~~~~~~eIk~~~~~~~~~~~~~~d~~~~~~~~~~i~ 87 (163)
T PF09888_consen 9 ILKEEASNYSIYDLMKIRGFLEKDIKYLPPEYREKYIESFF-EYFFGTYHEIKNMYRSGSFIEDFEIDEEEFKEFLNMIE 87 (163)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCcccccCCHHHHHHHHHHHH
Confidence 35566777888888888877766 55655555555 44444444433222223322333456555555556665
Q ss_pred HhcCC
Q 025233 113 ETGEG 117 (256)
Q Consensus 113 ~A~~g 117 (256)
+.+..
T Consensus 88 ~~~~~ 92 (163)
T PF09888_consen 88 DGCSY 92 (163)
T ss_pred Hhhcc
Confidence 55444
No 11
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.85 E-value=1.2e+02 Score=25.18 Aligned_cols=47 Identities=17% Similarity=0.318 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHHHhCCChHHHhhccCCCcHHHHHHHHHH-hhCCch
Q 025233 135 SIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKMVVK-CILNPP 181 (256)
Q Consensus 135 s~~~l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~l~~-~~~~~~ 181 (256)
+..-|+.|++.|.+.||.....++...+...|-..|..-++ |+.+|.
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p~ 123 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHPE 123 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCcc
Confidence 55679999999999999998888888777777777765444 555554
No 12
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=30.74 E-value=71 Score=24.79 Aligned_cols=37 Identities=16% Similarity=0.232 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCChHHHhhccCCCcHHHHHHHHHH
Q 025233 139 MKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKMVVK 175 (256)
Q Consensus 139 l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~l~~ 175 (256)
+..++++++..|.--|+++|-+.++=||.++...++.
T Consensus 65 i~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~VAm~ 101 (137)
T PF10788_consen 65 IESLKNAQKENFELKLEKDILQQMPIDFEDVWAVAMD 101 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 4568899999999999999999999999999866654
No 13
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=28.95 E-value=1e+02 Score=22.14 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=46.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhc--cCHHHHhhcCCCCchHHHHHHHHhhccccCCcccchhhHHHHHHHHHHhcCCC
Q 025233 41 LIEILVGRKSSHIALIKQAYQTRYK--RHLDQDIANIEPPHPYQKILVALATSHKAHNADVSQHVAKCDAKRLYETGEGS 118 (256)
Q Consensus 41 li~il~~rs~~~~~~i~~~Y~~~~~--~~L~~~i~~~~~sG~~~~ll~~l~~~~r~e~~~v~~~~~~~Da~~L~~A~~g~ 118 (256)
...--...|++|...|+..+...+. .++...+. ..+.-+..++..+ ++|...++.-...+.++-...
T Consensus 35 ~~~~~l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~------~~r~~l~~ll~~~-----~~D~~~i~a~~~~~~~~~~~l 103 (125)
T PF13801_consen 35 MLADMLNLTPEQQAKLRALMDEFRQEMRALRQELR------AARQELRALLAAP-----PPDEAAIEALLEEIREAQAEL 103 (125)
T ss_dssp HHHHHS-TTHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHCCS-----SS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHH
Confidence 3344467899999999999888775 33444444 4444456666654 345444444444443332221
Q ss_pred CCCchhHHHHHHhhcCCHHHHH
Q 025233 119 PGAAEKAVVLEIFSKRSIPQMK 140 (256)
Q Consensus 119 ~G~td~~~li~il~~rs~~~l~ 140 (256)
. ..-...++++...-+|+|..
T Consensus 104 ~-~~~~~~~~~~~~~LtpeQR~ 124 (125)
T PF13801_consen 104 R-QERLEHLLEIRAVLTPEQRA 124 (125)
T ss_dssp H-HHHHHHHHHHHHTT-GGGHH
T ss_pred H-HHHHHHHHHHHHcCCHHHhC
Confidence 0 01234566666666666553
No 14
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.71 E-value=4.5e+02 Score=26.10 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhhcCCC-CchHHHH---HHHHhhccccCC
Q 025233 21 ERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEP-PHPYQKI---LVALATSHKAHN 96 (256)
Q Consensus 21 ~~da~~L~~A~kg~g~de~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~~~~-sG~~~~l---l~~l~~~~r~e~ 96 (256)
..+.+.++..+.. |-..+.+.+..+.|.++.-- .+|-.+|...|...+. ..- ...+..- +++|....
T Consensus 236 ~~~~e~~r~~i~E---dL~~~~~~l~~cfpp~~~if-~~~l~~Yh~~ls~ll~-dl~s~~l~~~eil~llawV~~~---- 306 (667)
T KOG2286|consen 236 VRLLEVLRFVIRE---DLRVAKRVLVPCFPPHYNIF-SAYLELYHQALSDLLR-DLASEALELREILQLLAWVRNE---- 306 (667)
T ss_pred HHHHHHHHHHHHH---HHHHHHHhhcccCCchhHHH-HHHHHHHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHH----
Confidence 3445555554443 44455557777778877654 4588888877765554 222 1222222 23333321
Q ss_pred cccchhhHHHHHHHHHHhcCCCCCCchhHHHHHHhhcCCHHHHHHHHHHHHHHhCCChHHHhhccCCCcHHHHHHHHHH-
Q 025233 97 ADVSQHVAKCDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFSCYKHIYGHDYTKSLKRGNSTDFEDALKMVVK- 175 (256)
Q Consensus 97 ~~v~~~~~~~Da~~L~~A~~g~~G~td~~~li~il~~rs~~~l~~i~~~Y~~~~g~~L~~~i~~~~~g~~~~~l~~l~~- 175 (256)
.++-... .+..+..++=....+.|+..+.+.|-.....++.+.+..-+.-+...... ...
T Consensus 307 --------------~~~~~l~----~~~~~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~-~~~P 367 (667)
T KOG2286|consen 307 --------------YYTPLLQ----LNVDVLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAK-ETEP 367 (667)
T ss_pred --------------hcChhhh----ccchhhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCC
Confidence 0000000 01122222223345667777777777665555555443322222111100 000
Q ss_pred -------hhCCchHHHHHHHHHhhcCC-CCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCccHHHHhhccCCChHHHHHHH
Q 025233 176 -------CILNPPNYYAKTLYASIKGT-RVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLV 247 (256)
Q Consensus 176 -------~~~~~~~~~A~~L~~a~~g~-gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll 247 (256)
+..+-+......+...+... ++..+....++++. -.++....+-|.+.+....+.. +.+ .++.|...++
T Consensus 368 ~rd~~g~~~t~~p~~~fqmi~q~l~~~~~~~~Dl~~~~~~~~-~~~v~~f~~~~~~~~~~~~e~~-~~~-~~~~l~~y~i 444 (667)
T KOG2286|consen 368 PRDEEGYLYTPGPVIFFQMITQQLQVAAATSSDLSGKILRSL-LSEVPSFARNYPKAQDEDQESH-RRE-QPEGLREYLI 444 (667)
T ss_pred CccccccccCcccHHHHHhhHHHHHHHHhhHHHHHHHHHHHH-HHHhHHHHHHHHHhHHHHHHhc-hhc-ccccHHHHHH
Confidence 00011222333333333321 23444444444431 1233444446666776777777 566 7899999999
Q ss_pred HHhcccc
Q 025233 248 ALATKAS 254 (256)
Q Consensus 248 ~ll~~~~ 254 (256)
++.+.+.
T Consensus 445 A~~N~~~ 451 (667)
T KOG2286|consen 445 ANINNNL 451 (667)
T ss_pred HHHhchh
Confidence 9887653
No 15
>COG4800 Predicted transcriptional regulator with an HTH domain [Transcription]
Probab=26.16 E-value=2.3e+02 Score=22.14 Aligned_cols=63 Identities=24% Similarity=0.305 Sum_probs=37.2
Q ss_pred HHHHhhcCCCCCHHHHHHHHHh-CCHH---------------HHHHHHHHHHHhcCccHHHHhhccCCChHHHHHHHHHh
Q 025233 187 TLYASIKGTRVDKAAVARVLVS-RAEV---------------DMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLVALA 250 (256)
Q Consensus 187 ~L~~a~~g~gtd~~~li~il~~-rs~~---------------~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll~ll 250 (256)
.|++-++|...+.+++++|+-+ |+-. -|..|+..=+...|++. -|+ ++.-...++++++.+
T Consensus 45 tLYKil~G~dpr~~tl~~I~ktir~~ek~en~~fiA~IAAR~vL~~i~~~kk~i~gk~~--~ir-eYpa~slEeaIvAaV 121 (170)
T COG4800 45 TLYKILKGSDPRYDTLTRIFKTIRSYEKKENIGFIALIAARYVLEEIKFGKKGINGKSY--LIR-EYPASSLEEAIVAAV 121 (170)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccCCCeeeeeehHHHHHHHHhhhccccCcee--EEE-ecccccHHHHHHHHH
Confidence 4888889987888999999854 3321 14444433333344443 233 334455777777766
Q ss_pred cc
Q 025233 251 TK 252 (256)
Q Consensus 251 ~~ 252 (256)
++
T Consensus 122 rA 123 (170)
T COG4800 122 RA 123 (170)
T ss_pred Hh
Confidence 54
No 16
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=25.95 E-value=3e+02 Score=22.29 Aligned_cols=52 Identities=19% Similarity=0.182 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHhh---ccCHHHHhh
Q 025233 18 GSHERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRY---KRHLDQDIA 73 (256)
Q Consensus 18 ~~~~~da~~L~~A~kg~g~de~~li~il~~rs~~~~~~i~~~Y~~~~---~~~L~~~i~ 73 (256)
+.+..-|+.|+.. .|.|...+-+.|+... +.-..+.++|-..+ |.++.+.++
T Consensus 32 ~~~~~iA~fl~~~---~~l~k~~ig~~L~~~~-~~~~~vL~~y~~~f~f~~~~i~~ALR 86 (185)
T cd00171 32 DSPKEIAKFLYET---EGLNKKAIGEYLGENN-EFNSLVLHEFVDLFDFSGLRLDEALR 86 (185)
T ss_pred CCHHHHHHHHHhC---CCCCHHHHHHHHcCCc-hHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 4566667777765 4579999999999987 45588888898877 567777776
No 17
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=23.95 E-value=1.6e+02 Score=16.95 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhCCC-CCHHHHHHHhcCCCHHHHHH
Q 025233 21 ERDAAVARQALEESV-VNFKALIEILVGRKSSHIAL 55 (256)
Q Consensus 21 ~~da~~L~~A~kg~g-~de~~li~il~~rs~~~~~~ 55 (256)
..+...|..++...| .+-..|...+.+||+.+...
T Consensus 6 ~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~ 41 (49)
T smart00717 6 EEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRE 41 (49)
T ss_pred HHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHH
Confidence 345667888888888 78888889998999887643
No 18
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=23.55 E-value=1.6e+02 Score=27.26 Aligned_cols=80 Identities=13% Similarity=0.018 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHhhcCCHHHHHHHHH-HHHHHhCCChHHHhhccCCCcHHHHHHHHHHhhCCchHHH
Q 025233 106 CDAKRLYETGEGSPGAAEKAVVLEIFSKRSIPQMKLTFS-CYKHIYGHDYTKSLKRGNSTDFEDALKMVVKCILNPPNYY 184 (256)
Q Consensus 106 ~Da~~L~~A~~g~~G~td~~~li~il~~rs~~~l~~i~~-~Y~~~~g~~L~~~i~~~~~g~~~~~l~~l~~~~~~~~~~~ 184 (256)
.|-..|+.++++..| ++-...... .-++.++....+ .|+.. ++-+...-.=+++--.+-+|+++.-+..||+..|
T Consensus 246 ~d~~~L~r~ik~~L~-~~~~~~~~~--e~~~s~~e~~~~~~~~~~-~r~~~~~~~i~ls~ysKyLLIAAylASyNpar~D 321 (438)
T KOG2543|consen 246 TDKARLWRHIKPFLG-SDLNEIYRR--EIESSEDENRLAMEDKSL-NRKLVALSEIELSYYSKYLLIAAYLASYNPARLD 321 (438)
T ss_pred hHHHHHHHHhhHhhh-hhhHHHHHh--cCchhhhhhhhhhhhhhh-hhhhhccccccchHHHHHHHHHHHHhccCchhcc
Confidence 456788888888765 443322222 223333332211 12221 1111111112344456778888889999999999
Q ss_pred HHHHH
Q 025233 185 AKTLY 189 (256)
Q Consensus 185 A~~L~ 189 (256)
|....
T Consensus 322 arfFs 326 (438)
T KOG2543|consen 322 ARFFS 326 (438)
T ss_pred chhhh
Confidence 99883
No 19
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=22.97 E-value=3.1e+02 Score=20.03 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHHcC--CChHHHHHHHHHHHhCCCCCHHHHHHHhcC-----CCHHHHHHH
Q 025233 10 AALDVWML--GSHERDAAVARQALEESVVNFKALIEILVG-----RKSSHIALI 56 (256)
Q Consensus 10 ~~l~~~~~--~~~~~da~~L~~A~kg~g~de~~li~il~~-----rs~~~~~~i 56 (256)
.=+.++-. ++...|...++.-++|...++.-+-+||.. |++.|+-.+
T Consensus 19 EEi~~l~~~~~~~~e~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~ 72 (99)
T PF13758_consen 19 EEIEALPEDDDATREDLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDV 72 (99)
T ss_pred HHHHhccccCCCCHHHHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHH
Confidence 33444533 677778888888888888888888888877 777776554
No 20
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=22.10 E-value=1.3e+02 Score=27.34 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=39.7
Q ss_pred cHHHHHHHHHHhhCCchHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHHHHHhcCccHHH
Q 025233 165 DFEDALKMVVKCILNPPNYYAKTLYASIKGTRVDKAAVARVLVSRAEVDMDEIQRIFKKKYGMELRD 231 (256)
Q Consensus 165 ~~~~~l~~l~~~~~~~~~~~A~~L~~a~~g~gtd~~~li~il~~rs~~~l~~i~~~Y~~~yg~~L~~ 231 (256)
+-+.||-.+++|--| ..+|+....-|..++..-++.|++.+.++.-..++ .||+++..
T Consensus 244 DnEqAL~~LvkcnfD--------teeAlrr~rfnvk~~rd~l~~wsEeEcr~FEegl~-~yGKDF~l 301 (445)
T KOG4329|consen 244 DNEQALYELVKCNFD--------TEEALRRLRFNVKTVRDDLSGWSEEECRNFEEGLE-LYGKDFHL 301 (445)
T ss_pred ccHHHHHHHHHcCCc--------HHHHHHhcCCcceecccccccCCHHHHHHHHHHHH-HhcccHHH
Confidence 456677777776654 23444545556666777778888888888777776 88887765
No 21
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=21.74 E-value=2e+02 Score=17.32 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHhc-CCCHHHHH
Q 025233 21 ERDAAVARQALEESVVN-FKALIEILV-GRKSSHIA 54 (256)
Q Consensus 21 ~~da~~L~~A~kg~g~d-e~~li~il~-~rs~~~~~ 54 (256)
..+-+.|.+|++..|++ =..|-+-+. +||..|..
T Consensus 6 ~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~ 41 (48)
T PF00249_consen 6 EEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCR 41 (48)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHH
Confidence 45677899999999988 777888888 89988764
No 22
>PF11159 DUF2939: Protein of unknown function (DUF2939); InterPro: IPR021330 This bacterial family of proteins has no known function.
Probab=21.38 E-value=3e+02 Score=19.36 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=48.2
Q ss_pred HHHHcCCChHHHHHHHHHHHhCCCCCHHHHHHHhcCCCHHHHHHHHHHHHHhhccCHHHHhhcCCCCchHHHHHHHH
Q 025233 12 LDVWMLGSHERDAAVARQALEESVVNFKALIEILVGRKSSHIALIKQAYQTRYKRHLDQDIANIEPPHPYQKILVAL 88 (256)
Q Consensus 12 l~~~~~~~~~~da~~L~~A~kg~g~de~~li~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~~~~sG~~~~ll~~l 88 (256)
...++...|-.-...|++|++.. |...+.+-+ ++..++..++......+...+.....+.++..+-.++
T Consensus 5 ~~~~~~~sPy~al~~i~~Ai~~~--D~~~l~~~V------D~~avr~slk~ql~~~~~~~~~~~~~~~~~~~l~~~~ 73 (95)
T PF11159_consen 5 ALGYYAASPYYALYQIRQAIQAH--DAAALARYV------DFPAVRASLKDQLNAELVSRIGPEVADDPLAALGAML 73 (95)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHc--CHHHHHHHc------CHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHH
Confidence 34555667888999999999984 878887776 7888888888888877777773123344454443333
No 23
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.01 E-value=1.2e+02 Score=25.23 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHhcCccHHHHhhccCCChHHHHHHH
Q 025233 210 AEVDMDEIQRIFKKKYGMELRDAICESIPSGDYRDFLV 247 (256)
Q Consensus 210 s~~~l~~i~~~Y~~~yg~~L~~~I~~~~~~G~~~~~Ll 247 (256)
+-.=|+.|++.|.+.||.....++.-. ..-+|.+.|-
T Consensus 76 pfaFLe~Ik~~F~k~YG~~a~ta~Ays-mN~EFs~vL~ 112 (217)
T KOG0859|consen 76 PFAFLERIKEDFKKRYGGGAHTAVAYS-MNKEFSSVLK 112 (217)
T ss_pred cHHHHHHHHHHHHHHhccchhHHHHhH-hHHHHHHHHH
Confidence 445689999999999999888888766 4666666554
Done!