BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025234
(256 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33
PE=2 SV=2
Length = 834
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 87/184 (47%), Gaps = 19/184 (10%)
Query: 55 VYVAVGKDDLHVLK------WALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108
++VAV K HV K WAL + + G +I L+HV P I + + +E
Sbjct: 47 IFVAVDK---HVAKSKSTLIWALQN--TGGKKICLIHVHQPSQMIPLMGAKFPVGAVKEE 101
Query: 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMG 168
+VRV+ +E + +L Y+R+C V E M +E ++ I+ LIS + LVMG
Sbjct: 102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161
Query: 169 TKLSPRSRLFTKKLS-----KGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSS 223
+ R ++++++ K FV++ AP C++ G + + + + +S
Sbjct: 162 ---AAADRHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYAS 218
Query: 224 PSPS 227
P PS
Sbjct: 219 PRPS 222
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36
PE=2 SV=2
Length = 435
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 22/157 (14%)
Query: 55 VYVAVGKDDLHV---LKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVR 111
+YVAV + DL L WA+ + S G +VHV P+ G + +++++R
Sbjct: 36 IYVAVTEKDLESKSSLVWAIQN--SGGKEFCIVHVHQPIP------GEM----FHEQKLR 83
Query: 112 VYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTK- 170
+Y E++ +N +KY+++C +VT E + +E+ + K IL LIS VT LVMG
Sbjct: 84 LYRKEKDKAHKNS-EKYLQICRQMQVTAEIIYIETDSVEKGILQLISQRGVTKLVMGAAA 142
Query: 171 ---LSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204
S R R K K ++ + AP C + +G
Sbjct: 143 DRHYSMRMRDLKSK--KAIYIHREAPATCLIWFTCNG 177
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52
PE=2 SV=1
Length = 845
Score = 64.3 bits (155), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 65 HVLKWALDHAVSPGARIY-LVHVFSPVTYINTPVG-RLARSQLNQEQVRVYVNEENNRRR 122
+V+ WAL+ + G + L++V PV+YI TP+G +A S+L ++ V Y E +
Sbjct: 36 YVVFWALEKFIPEGFTDFKLLYVRPPVSYIPTPMGIAVAVSELREDVVSAYKQELDWSAN 95
Query: 123 NLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKL 182
+L+ Y ++ KV VE +L++S A AI + I+ VT LV+G L F++K+
Sbjct: 96 EMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMSL---RGFFSRKI 152
Query: 183 SKGEFVKKNAPDYCEVTIVHDGK 205
+ P +C V ++ GK
Sbjct: 153 DMSSLIATAVPRFCTVYVISKGK 175
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54
PE=2 SV=1
Length = 308
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 92/195 (47%), Gaps = 18/195 (9%)
Query: 55 VYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVR 111
+YVAV +D L WAL + +I+L+HV P + + T RL +S+++ Q
Sbjct: 5 IYVAVNQDVRESKKTLLWALKNLQV--KKIFLLHVHLPFS-LTTSSSRLEQSEIDAIQ-- 59
Query: 112 VYVNEENNRRRNLLQKYIRLCNDAKVT---VETMLVESKATAKAILDLISVANVTSLVMG 168
+ E N N L KY +C + V V+T ++ + I++LI +T+LVMG
Sbjct: 60 ---DSELNTSVNSLYKYRDICINKGVNEKDVDTSMISGHDVGEGIVELIYQNIITNLVMG 116
Query: 169 TKLSPR-SRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELAR-SSSPSP 226
P SR + K E+V ++AP C++ + GK + Q+ L S S S
Sbjct: 117 AAADPHYSRGMSITSRKAEYVSQHAPHSCKIWFICKGKLI--KQRERSFYLGNPSDSFSE 174
Query: 227 SSPGTGRPQVKGKSR 241
S +P KG+ R
Sbjct: 175 FSTSAEKPISKGRRR 189
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35
PE=1 SV=2
Length = 835
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 65 HVLKWALDHAVSPG-ARIYLVHVFSPVTYINTPVGR-LARSQLNQEQVRVYVNEENNRRR 122
+V+ WA++ + G L+H+ +T + TP+G + S++ + V Y E +
Sbjct: 34 YVVTWAIEKFATEGNVGFKLLHIHPMITSVPTPMGNAIPISEVRDDVVTAYRQEILWQSE 93
Query: 123 NLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKL 182
+L+ Y +L KV VE +++ES A AI + ++ ++ +V+G S RS F++K
Sbjct: 94 EMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGG--SSRS-FFSRKA 150
Query: 183 SKGEFVKKNAPDYCEVTIVHDGK 205
+ P++C V +V GK
Sbjct: 151 DICSVISALMPNFCTVYVVSKGK 173
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37
PE=2 SV=1
Length = 400
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 29/154 (18%)
Query: 55 VYVAVGKD--DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRV 112
+YVAVG D + L WA+ + + G +VHV P+
Sbjct: 16 IYVAVGSDLGNKSTLVWAIQN--TGGKEFCIVHVHQPL---------------------- 51
Query: 113 YVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS 172
+E + + +L KY++ C +V E + ++ ++ K I+ LIS NV LVMG
Sbjct: 52 -YRKEKEKTQKILDKYLQKCRQMQVCAEMIHIKMESVEKGIIQLISERNVKKLVMGAASD 110
Query: 173 PRSRLFTKKL--SKGEFVKKNAPDYCEVTIVHDG 204
R + L +K ++++ AP C + G
Sbjct: 111 TRYSMRMADLLSTKAIYIRQEAPATCCIWFTCKG 144
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 66/157 (42%), Gaps = 34/157 (21%)
Query: 55 VYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFS-PVTYINTPVGRLARSQLNQEQV 110
VY+AVG D + WAL + I L+H+ + ++ TP G+L S +++E++
Sbjct: 22 VYIAVGNDVQEGYKTIHWALKKWNNIPISIVLLHLCNISQDFVYTPFGKLPASSVSEEKL 81
Query: 111 RVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTK 170
+V E+ + LL KYI C + +V ++ G
Sbjct: 82 QVLRKYEDQKIDKLLSKYITFCGK----------------------VCPLSVNFVLFGKS 119
Query: 171 LSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKV 207
S S F +V +N P++CE I+ GK V
Sbjct: 120 KSAISGSF--------YVYQNKPEFCEFYIICGGKMV 148
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana
GN=PUB55 PE=3 SV=1
Length = 568
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 57 VAVGKDDLHV------------LKWALDHAVSPGAR-IYLVHVFSPVTYINTPVGRLARS 103
+A+G D +HV L WAL + GA+ + ++HV+ P T +P R
Sbjct: 5 MAMGNDVVHVAVKSDVRESRSTLLWALRNL---GAKKVCILHVYQPKT--ASPAAR---- 55
Query: 104 QLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLV---ESKATAKAILDLISVA 160
+L + + +Y L Y C V + + + E + IL+LI +
Sbjct: 56 KLEELEAIMY---------ETLHDYFDFCQQEGVNEDDIYISCIEMNDVKQGILELIHES 106
Query: 161 NVTSLVMGTKLS--PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAEL 218
+ LVMG ++F K K ++V ++AP CEV + DG + EA L
Sbjct: 107 KIKKLVMGAASDHHYSEKMFDLKSRKAKYVYQHAPSSCEVMFMCDGHLIY----TKEANL 162
Query: 219 ARSSSPSPSSPGTGRPQV 236
+ S G +P++
Sbjct: 163 EDCMGETESEAGQSKPKL 180
>sp|Q94A51|PUB32_ARATH U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32
PE=2 SV=1
Length = 805
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 7/155 (4%)
Query: 55 VYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVR 111
++VAV +D + WA + G +I L++V + +L + V+
Sbjct: 17 IFVAVAEDVERSKTTVLWAARNF--SGKKICLLYVHRTARAASWTHKKLVGGSFKKHDVK 74
Query: 112 VYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 171
V E + L+ Y++L ++ ++ + + + + + I++LI+ + LVMG
Sbjct: 75 VIERVEKPKVDELMNSYLQLLSETEIQTDKLCIAGQNIEECIVELIARHKIKWLVMGAAS 134
Query: 172 SPR--SRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204
++ K K FV K APD C + + G
Sbjct: 135 DKHYSWKMTDLKSKKAIFVCKKAPDSCHIWFLCKG 169
>sp|Q8GXQ7|PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56
PE=2 SV=1
Length = 365
Score = 34.7 bits (78), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Query: 103 SQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVT---VETMLVESKATAKAILDLISV 159
S L Q ++ E R + L KY +C D V V+ + + + I++LI
Sbjct: 6 SGLEQSEIDAIQELEQTSRNDTLLKYHDICIDEGVIEQDVDMSCFSANSVGEWIVELIYQ 65
Query: 160 ANVTSLVMGTKLSPRSRLFTKKL-----SKGEFVKKNAPDYCEVTIVHDGKKV 207
N+ L+MG +++ + +K ++V ++AP C + +V +G +
Sbjct: 66 NNIKKLIMGATADSH---YSEGMVHITPTKADYVIQHAPHCCNIWLVCNGNLI 115
>sp|P06684|CO5_MOUSE Complement C5 OS=Mus musculus GN=C5 PE=1 SV=2
Length = 1680
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 125 LQKYIRLCNDAKV-----TVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFT 179
++K + +C K+ ++ L+E+ +K+ L VA SL G + PR RL
Sbjct: 1156 IRKAVDICPTMKIHTALDKADSFLLENTLPSKSTFTLAIVAYALSL--GDRTHPRFRLIV 1213
Query: 180 KKLSKGEFVKKNAPDY 195
L K FVK + P Y
Sbjct: 1214 SALRKEAFVKGDPPIY 1229
>sp|Q974N4|SYL1_SULTO Leucine--tRNA ligase 1 OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=leuS1 PE=3 SV=1
Length = 945
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 82 YLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVET 141
YL + V +++ +G+ A E+V +YVN++NN R LL+K I D K ++
Sbjct: 807 YLRSIIEDVNRLSSELGKEA------EKVVIYVNDDNNLRE-LLKKAIIAIKDRK-SLRD 858
Query: 142 MLVESKATAKAILDLISVANV 162
++E+ K + +ANV
Sbjct: 859 FMIENNVDDKTARRIYELANV 879
>sp|Q9FKG5|PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51
PE=2 SV=2
Length = 796
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 112 VYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 171
VY + + + R +L + +V ++ M++ES A AI + ++ LV+G
Sbjct: 62 VYKKDVDRKTREMLLPSRDMFVHREVQLDIMVLESDDIADAISKAVQDHGISELVIG--- 118
Query: 172 SPRSRLFTKKLSKGEFVKKNA---PDYCEVTIVHDGK 205
+ S +F+ KL + + A P +C V ++ GK
Sbjct: 119 ASSSIIFSWKLKRSNLSSRIADATPRFCSVHVISKGK 155
>sp|Q9C5U0|AHK4_ARATH Histidine kinase 4 OS=Arabidopsis thaliana GN=AHK4 PE=1 SV=1
Length = 1080
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 172 SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDG---QKVAEAELARSSSPSPSS 228
SP+ LF ++ EF + + + + I+ + + G Q+V E R P SS
Sbjct: 875 SPKLALFATNITNSEFDRAKSAGFADTVIMKPLRASMIGACLQQVLELRKTRQQHPEGSS 934
Query: 229 PGTGRPQVKGK 239
P T + + GK
Sbjct: 935 PATLKSLLTGK 945
>sp|Q5XF57|Y5576_ARATH Probable receptor-like serine/threonine-protein kinase At5g57670
OS=Arabidopsis thaliana GN=At5g57670 PE=2 SV=1
Length = 579
Score = 31.2 bits (69), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 49 DAAASDVYVAVGKD---DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQL 105
+ ++ + VA+ D +VL WA++ P + +H+ P+ + R+Q+
Sbjct: 6 EEGSNKILVAISLDRDESQNVLSWAINVLAKPSDTVVALHLLVGEEPRKLPMKKKKRTQI 65
Query: 106 NQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSL 165
+ V ++L ++ C +V +E + S + ++D + + L
Sbjct: 66 RHAKAHVI---------SMLGEFAYTCCHNQVNLEAKVGFSSNIGRGLIDEVKSISAHYL 116
Query: 166 VMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 206
V+ + R++ +V AP C V +V + +K
Sbjct: 117 VLSRPTTHEFRIWN---DIKRYVSDFAPSSCSVVLVGNQRK 154
>sp|Q8IYR2|SMYD4_HUMAN SET and MYND domain-containing protein 4 OS=Homo sapiens GN=SMYD4
PE=2 SV=3
Length = 804
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLS 183
LLQK+ L +VT+ +TA+ + D+ L + L P LF K+LS
Sbjct: 12 LLQKWASLPTSVQVTI--------STAETLRDIF-------LHSSSLLQPEDELFLKRLS 56
Query: 184 KGEFVKKNA 192
KG V K++
Sbjct: 57 KGYLVGKDS 65
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,062,460
Number of Sequences: 539616
Number of extensions: 3630326
Number of successful extensions: 16459
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 16148
Number of HSP's gapped (non-prelim): 195
length of query: 256
length of database: 191,569,459
effective HSP length: 115
effective length of query: 141
effective length of database: 129,513,619
effective search space: 18261420279
effective search space used: 18261420279
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)