Query 025234
Match_columns 256
No_of_seqs 221 out of 1137
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 03:52:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025234.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025234hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01989 STK_N The N-terminal d 99.9 1.9E-25 4.1E-30 180.3 18.1 144 54-204 1-146 (146)
2 PRK15456 universal stress prot 99.9 1.4E-23 3E-28 169.4 15.6 137 52-202 2-142 (142)
3 PRK15005 universal stress prot 99.9 9.5E-23 2.1E-27 164.0 15.2 139 52-202 2-144 (144)
4 PRK09982 universal stress prot 99.9 4.1E-22 8.9E-27 161.4 14.2 138 50-204 1-140 (142)
5 PRK15118 universal stress glob 99.9 5.3E-22 1.1E-26 160.2 14.3 137 50-204 1-140 (144)
6 PRK10116 universal stress prot 99.9 2.4E-20 5.1E-25 149.8 16.3 138 50-204 1-140 (142)
7 PF00582 Usp: Universal stress 99.9 2.4E-20 5.1E-25 145.8 15.8 137 52-202 2-140 (140)
8 cd01988 Na_H_Antiporter_C The 99.9 3.4E-20 7.4E-25 146.0 16.0 130 54-202 1-132 (132)
9 PRK11175 universal stress prot 99.8 3.3E-20 7.1E-25 167.1 16.3 145 50-204 1-147 (305)
10 cd01987 USP_OKCHK USP domain i 99.8 6.3E-20 1.4E-24 144.1 14.1 121 54-202 1-124 (124)
11 PRK11175 universal stress prot 99.8 6.9E-18 1.5E-22 151.9 14.5 140 51-204 151-301 (305)
12 cd00293 USP_Like Usp: Universa 99.7 8.6E-17 1.9E-21 124.4 15.7 128 54-201 1-130 (130)
13 COG0589 UspA Universal stress 99.7 1.3E-16 2.8E-21 127.8 17.1 147 50-204 3-153 (154)
14 PRK12652 putative monovalent c 99.4 1.6E-12 3.6E-17 120.5 14.4 132 49-202 2-150 (357)
15 PRK10490 sensor protein KdpD; 99.2 1.3E-10 2.7E-15 119.7 14.6 125 51-204 249-375 (895)
16 COG2205 KdpD Osmosensitive K+ 99.1 1.9E-09 4.2E-14 107.1 13.7 130 50-206 246-377 (890)
17 cd01984 AANH_like Adenine nucl 98.1 1.5E-05 3.3E-10 58.5 7.1 50 148-200 35-85 (86)
18 PLN03159 cation/H(+) antiporte 96.8 0.014 2.9E-07 60.4 11.7 148 49-203 455-615 (832)
19 PLN03159 cation/H(+) antiporte 96.1 0.17 3.6E-06 52.5 15.0 150 52-205 630-796 (832)
20 TIGR02432 lysidine_TilS_N tRNA 95.6 0.19 4.2E-06 41.9 11.0 94 54-174 1-112 (189)
21 PF01171 ATP_bind_3: PP-loop f 94.3 0.58 1.2E-05 39.1 10.3 93 54-173 1-108 (182)
22 cd01992 PP-ATPase N-terminal d 93.8 0.87 1.9E-05 37.6 10.3 94 54-174 1-109 (185)
23 PRK12342 hypothetical protein; 92.9 1 2.2E-05 40.3 9.7 102 61-198 33-139 (254)
24 PRK03359 putative electron tra 92.0 1.4 3E-05 39.4 9.6 100 64-198 39-142 (256)
25 COG2086 FixA Electron transfer 90.2 2.6 5.7E-05 37.8 9.5 100 59-199 33-142 (260)
26 cd01993 Alpha_ANH_like_II This 88.2 9.2 0.0002 31.3 11.0 23 151-173 96-118 (185)
27 COG0037 MesJ tRNA(Ile)-lysidin 85.4 7.6 0.00016 34.6 9.6 38 52-90 21-59 (298)
28 PF00875 DNA_photolyase: DNA p 82.8 9.6 0.00021 31.0 8.4 118 64-209 14-131 (165)
29 PF01012 ETF: Electron transfe 82.0 26 0.00056 28.4 10.9 104 54-199 1-118 (164)
30 PRK10696 tRNA 2-thiocytidine b 81.4 26 0.00056 30.9 11.2 94 50-173 27-143 (258)
31 PF02601 Exonuc_VII_L: Exonucl 81.2 4.6 0.0001 36.8 6.4 65 136-203 43-115 (319)
32 TIGR00268 conserved hypothetic 81.0 21 0.00046 31.4 10.5 24 150-173 96-119 (252)
33 TIGR00591 phr2 photolyase PhrI 80.7 18 0.00038 34.8 10.6 85 64-170 38-122 (454)
34 KOG1467 Translation initiation 79.7 25 0.00055 34.3 10.9 118 51-212 358-478 (556)
35 TIGR03556 photolyase_8HDF deox 75.8 25 0.00053 34.1 10.0 86 64-172 16-101 (471)
36 COG0041 PurE Phosphoribosylcar 75.2 19 0.00041 29.8 7.6 70 124-204 17-89 (162)
37 cd01985 ETF The electron trans 75.2 45 0.00098 27.4 10.3 23 150-172 80-102 (181)
38 PRK00286 xseA exodeoxyribonucl 71.8 17 0.00036 34.8 7.7 73 137-212 165-241 (438)
39 TIGR01162 purE phosphoribosyla 70.9 48 0.001 27.4 9.1 71 124-205 13-86 (156)
40 TIGR00237 xseA exodeoxyribonuc 70.6 21 0.00046 34.2 8.1 76 136-214 158-238 (432)
41 TIGR00342 thiazole biosynthesi 67.4 99 0.0021 28.9 11.7 37 50-89 170-207 (371)
42 COG1197 Mfd Transcription-repa 67.3 72 0.0016 34.5 11.6 155 51-244 615-789 (1139)
43 PRK13820 argininosuccinate syn 66.3 1E+02 0.0022 29.4 11.6 23 150-172 98-120 (394)
44 TIGR02765 crypto_DASH cryptoch 66.2 62 0.0014 30.7 10.3 93 64-173 16-108 (429)
45 PF13167 GTP-bdg_N: GTP-bindin 65.9 33 0.00071 25.9 6.7 49 122-170 7-66 (95)
46 PF02844 GARS_N: Phosphoribosy 64.0 6.6 0.00014 30.1 2.6 24 147-171 49-72 (100)
47 PRK10660 tilS tRNA(Ile)-lysidi 61.8 62 0.0013 31.1 9.4 38 52-89 15-55 (436)
48 COG1606 ATP-utilizing enzymes 60.6 1.3E+02 0.0028 27.1 10.6 91 52-173 17-125 (269)
49 PRK05253 sulfate adenylyltrans 60.5 1.1E+02 0.0024 27.9 10.4 39 52-90 27-67 (301)
50 cd02067 B12-binding B12 bindin 59.4 54 0.0012 24.9 7.1 40 132-173 23-62 (119)
51 PRK00109 Holliday junction res 58.8 17 0.00037 29.2 4.3 53 149-205 42-99 (138)
52 COG1570 XseA Exonuclease VII, 57.9 52 0.0011 31.8 7.9 78 123-202 151-232 (440)
53 PF02310 B12-binding: B12 bind 57.4 75 0.0016 23.8 7.6 62 134-201 26-87 (121)
54 cd01990 Alpha_ANH_like_I This 56.5 95 0.0021 25.9 8.7 24 150-173 84-107 (202)
55 PF00731 AIRC: AIR carboxylase 56.1 1E+02 0.0022 25.3 8.5 72 126-208 17-91 (150)
56 PF03746 LamB_YcsF: LamB/YcsF 55.5 1.2E+02 0.0027 26.8 9.4 119 56-199 31-160 (242)
57 KOG1650 Predicted K+/H+-antipo 50.4 81 0.0017 32.7 8.5 39 53-91 615-655 (769)
58 TIGR00250 RNAse_H_YqgF RNAse H 49.2 33 0.00071 27.3 4.4 53 148-204 35-92 (130)
59 PF00448 SRP54: SRP54-type pro 48.2 1.7E+02 0.0037 24.7 9.2 89 55-176 5-98 (196)
60 PRK13010 purU formyltetrahydro 48.0 1.5E+02 0.0032 26.9 9.0 104 30-172 72-180 (289)
61 PRK11914 diacylglycerol kinase 47.9 92 0.002 27.9 7.8 64 131-205 34-98 (306)
62 COG0151 PurD Phosphoribosylami 47.7 69 0.0015 30.8 7.0 22 150-171 52-73 (428)
63 PLN00200 argininosuccinate syn 47.7 2.6E+02 0.0056 26.7 12.2 25 149-173 101-125 (404)
64 PRK10674 deoxyribodipyrimidine 47.6 1.9E+02 0.0042 27.9 10.3 87 64-171 17-106 (472)
65 cd01712 ThiI ThiI is required 46.4 1.6E+02 0.0035 24.0 11.3 23 151-173 93-115 (177)
66 COG0552 FtsY Signal recognitio 46.4 2.5E+02 0.0055 26.2 11.8 94 51-176 139-236 (340)
67 COG0299 PurN Folate-dependent 45.3 2E+02 0.0044 24.8 10.0 81 54-170 2-88 (200)
68 PRK14665 mnmA tRNA-specific 2- 45.2 2.7E+02 0.0057 26.1 12.2 22 151-172 103-124 (360)
69 COG1597 LCB5 Sphingosine kinas 45.1 96 0.0021 28.2 7.4 74 122-205 19-93 (301)
70 TIGR02855 spore_yabG sporulati 44.8 66 0.0014 29.2 6.0 89 124-215 116-217 (283)
71 PRK13982 bifunctional SbtC-lik 44.6 1.5E+02 0.0033 28.9 9.0 34 51-85 69-104 (475)
72 cd08550 GlyDH-like Glycerol_de 44.0 1.2E+02 0.0026 27.9 8.0 64 129-203 42-109 (349)
73 PF02887 PK_C: Pyruvate kinase 43.7 50 0.0011 25.3 4.6 46 149-205 4-49 (117)
74 TIGR02766 crypt_chrom_pln cryp 43.7 1.8E+02 0.0038 28.1 9.4 85 64-171 13-97 (475)
75 PF05582 Peptidase_U57: YabG p 43.6 63 0.0014 29.4 5.8 90 124-216 117-219 (287)
76 PRK00919 GMP synthase subunit 42.5 1.9E+02 0.0042 26.5 8.9 37 52-90 21-58 (307)
77 PRK12569 hypothetical protein; 42.2 1.3E+02 0.0028 26.8 7.4 106 54-171 36-150 (245)
78 PRK05406 LamB/YcsF family prot 42.1 1.4E+02 0.0029 26.7 7.5 121 54-199 33-162 (246)
79 cd01986 Alpha_ANH_like Adenine 41.9 1.4E+02 0.003 22.0 8.1 27 149-175 49-75 (103)
80 PRK06801 hypothetical protein; 41.6 67 0.0015 29.1 5.7 54 146-201 27-80 (286)
81 PRK12857 fructose-1,6-bisphosp 41.5 61 0.0013 29.4 5.5 55 145-201 26-80 (284)
82 PRK14664 tRNA-specific 2-thiou 41.2 3.1E+02 0.0067 25.8 11.0 22 151-172 98-119 (362)
83 PRK13054 lipid kinase; Reviewe 40.3 1.5E+02 0.0032 26.6 7.8 64 132-205 27-94 (300)
84 TIGR00884 guaA_Cterm GMP synth 40.2 2.7E+02 0.0058 25.5 9.6 36 53-90 17-53 (311)
85 TIGR01858 tag_bisphos_ald clas 40.1 67 0.0015 29.1 5.5 54 146-202 25-79 (282)
86 TIGR02069 cyanophycinase cyano 39.8 2.4E+02 0.0052 24.9 8.9 102 56-190 1-110 (250)
87 PRK13337 putative lipid kinase 39.7 1.6E+02 0.0036 26.3 8.1 68 129-205 25-93 (304)
88 PRK12737 gatY tagatose-bisphos 39.4 71 0.0015 29.0 5.5 54 145-201 26-80 (284)
89 COG1646 Predicted phosphate-bi 39.1 1.6E+02 0.0035 26.1 7.4 52 148-204 28-79 (240)
90 cd01995 ExsB ExsB is a transcr 38.6 2.1E+02 0.0045 23.0 9.5 23 151-173 66-88 (169)
91 PRK14057 epimerase; Provisiona 38.5 2.9E+02 0.0063 24.7 10.6 34 135-170 190-223 (254)
92 PRK12738 kbaY tagatose-bisphos 38.3 79 0.0017 28.7 5.7 55 145-202 26-81 (286)
93 PRK06806 fructose-bisphosphate 38.0 92 0.002 28.1 6.0 64 135-201 16-80 (281)
94 cd01997 GMP_synthase_C The C-t 37.6 2.8E+02 0.006 25.2 9.1 24 150-173 88-112 (295)
95 PF01784 NIF3: NIF3 (NGG1p int 36.4 28 0.00061 30.5 2.4 45 36-85 15-60 (241)
96 PRK09590 celB cellobiose phosp 36.2 98 0.0021 23.6 5.1 62 129-203 22-83 (104)
97 TIGR00930 2a30 K-Cl cotranspor 35.9 5.7E+02 0.012 27.3 12.4 96 53-172 576-678 (953)
98 TIGR00273 iron-sulfur cluster- 35.7 1.3E+02 0.0028 29.0 7.0 59 110-169 38-96 (432)
99 cd05565 PTS_IIB_lactose PTS_II 34.8 1E+02 0.0023 23.3 5.0 62 127-203 19-80 (99)
100 COG1066 Sms Predicted ATP-depe 34.6 2.7E+02 0.0058 27.0 8.7 52 147-202 155-217 (456)
101 PRK10799 metal-binding protein 34.0 56 0.0012 28.7 3.9 44 37-85 20-63 (247)
102 PRK00143 mnmA tRNA-specific 2- 33.6 3.9E+02 0.0085 24.7 10.5 24 150-173 105-128 (346)
103 PF07355 GRDB: Glycine/sarcosi 33.4 64 0.0014 30.2 4.3 63 136-201 47-117 (349)
104 PF04459 DUF512: Protein of un 33.2 3E+02 0.0065 23.7 8.2 53 150-204 149-202 (204)
105 PRK02261 methylaspartate mutas 32.7 2.2E+02 0.0049 22.6 6.9 71 125-200 20-90 (137)
106 PF04244 DPRP: Deoxyribodipyri 32.6 1.5E+02 0.0032 25.9 6.3 84 123-214 49-136 (224)
107 PF01008 IF-2B: Initiation fac 32.4 82 0.0018 27.9 4.8 46 161-210 176-225 (282)
108 TIGR00167 cbbA ketose-bisphosp 31.7 1.3E+02 0.0029 27.3 6.0 65 135-201 16-83 (288)
109 cd00947 TBP_aldolase_IIB Tagat 31.6 99 0.0021 27.9 5.1 67 135-203 11-77 (276)
110 cd01713 PAPS_reductase This do 31.2 2.5E+02 0.0055 21.8 9.7 27 151-177 95-121 (173)
111 TIGR00853 pts-lac PTS system, 31.0 84 0.0018 23.4 3.9 63 127-204 22-84 (95)
112 PRK08745 ribulose-phosphate 3- 31.0 3.6E+02 0.0077 23.4 10.0 34 135-170 168-201 (223)
113 COG1927 Mtd Coenzyme F420-depe 30.9 1.4E+02 0.0031 26.1 5.7 49 150-205 49-97 (277)
114 PRK13059 putative lipid kinase 30.5 2.5E+02 0.0053 25.1 7.6 68 128-205 24-92 (295)
115 COG0434 SgcQ Predicted TIM-bar 30.5 1E+02 0.0022 27.5 4.8 123 53-202 82-212 (263)
116 PRK09195 gatY tagatose-bisphos 30.4 1.1E+02 0.0025 27.7 5.3 51 146-201 27-80 (284)
117 PRK07998 gatY putative fructos 30.3 1.1E+02 0.0023 27.9 5.1 55 146-202 27-81 (283)
118 cd03557 L-arabinose_isomerase 30.2 3E+02 0.0064 27.0 8.5 46 150-204 51-100 (484)
119 PF02568 ThiI: Thiamine biosyn 30.1 3.1E+02 0.0067 23.4 7.7 37 52-90 3-39 (197)
120 TIGR00486 YbgI_SA1388 dinuclea 30.0 82 0.0018 27.7 4.3 45 36-85 19-64 (249)
121 TIGR00655 PurU formyltetrahydr 29.7 4.2E+02 0.0091 23.9 9.0 102 31-171 63-170 (280)
122 PRK13055 putative lipid kinase 29.3 3.1E+02 0.0067 25.0 8.2 71 125-205 22-95 (334)
123 PRK12858 tagatose 1,6-diphosph 29.1 4.8E+02 0.01 24.3 11.1 128 55-205 86-251 (340)
124 COG0036 Rpe Pentose-5-phosphat 29.0 4E+02 0.0086 23.4 9.0 25 144-169 174-198 (220)
125 cd03364 TOPRIM_DnaG_primases T 29.0 1.5E+02 0.0032 20.8 4.8 33 52-84 43-77 (79)
126 PRK06029 3-octaprenyl-4-hydrox 28.9 1.1E+02 0.0023 26.0 4.6 33 52-84 1-35 (185)
127 TIGR00147 lipid kinase, YegS/R 28.6 3.1E+02 0.0067 24.2 7.9 70 127-205 23-93 (293)
128 TIGR03702 lip_kinase_YegS lipi 28.4 2.9E+02 0.0062 24.6 7.7 63 133-205 24-90 (293)
129 cd01994 Alpha_ANH_like_IV This 28.2 3.6E+02 0.0079 22.7 8.3 33 54-90 1-35 (194)
130 PRK08185 hypothetical protein; 28.2 1.3E+02 0.0028 27.3 5.3 52 147-201 23-74 (283)
131 cd08171 GlyDH-like2 Glycerol d 27.7 3.6E+02 0.0077 24.7 8.3 60 133-203 46-110 (345)
132 TIGR00032 argG argininosuccina 27.3 5.5E+02 0.012 24.4 10.9 24 149-172 94-117 (394)
133 PF14639 YqgF: Holliday-juncti 27.0 70 0.0015 26.1 3.1 51 150-204 52-107 (150)
134 PRK09197 fructose-bisphosphate 26.8 1.6E+02 0.0036 27.5 5.8 75 121-201 9-98 (350)
135 PRK06027 purU formyltetrahydro 26.7 4.8E+02 0.01 23.5 9.6 105 29-172 67-176 (286)
136 COG1184 GCD2 Translation initi 26.7 3.9E+02 0.0085 24.5 8.1 86 123-210 130-236 (301)
137 TIGR00640 acid_CoA_mut_C methy 26.6 3.2E+02 0.007 21.5 7.2 63 122-192 19-81 (132)
138 cd01714 ETF_beta The electron 26.5 3.9E+02 0.0085 22.5 10.8 25 150-174 97-121 (202)
139 PRK09423 gldA glycerol dehydro 26.3 3.3E+02 0.0071 25.2 7.9 63 130-203 50-116 (366)
140 PRK00861 putative lipid kinase 25.9 3.7E+02 0.008 23.9 7.9 59 137-205 33-91 (300)
141 PRK00074 guaA GMP synthase; Re 25.8 6.4E+02 0.014 24.7 10.4 37 51-89 214-251 (511)
142 cd00946 FBP_aldolase_IIA Class 25.6 1.7E+02 0.0036 27.5 5.6 64 135-201 14-93 (345)
143 PRK02929 L-arabinose isomerase 25.0 3.6E+02 0.0077 26.6 8.1 45 150-203 57-105 (499)
144 PLN02948 phosphoribosylaminoim 24.6 2.4E+02 0.0051 28.2 6.9 70 124-204 425-497 (577)
145 TIGR01917 gly_red_sel_B glycin 24.5 2.3E+02 0.0049 27.4 6.4 63 136-201 43-113 (431)
146 PRK09722 allulose-6-phosphate 24.5 4.8E+02 0.01 22.8 11.3 35 134-170 165-199 (229)
147 COG0380 OtsA Trehalose-6-phosp 24.4 6.9E+02 0.015 24.6 10.1 103 50-172 279-389 (486)
148 COG1737 RpiR Transcriptional r 24.2 1E+02 0.0022 27.5 3.9 39 49-87 174-213 (281)
149 COG1440 CelA Phosphotransferas 24.2 3E+02 0.0065 21.1 5.8 59 130-203 23-81 (102)
150 COG0301 ThiI Thiamine biosynth 24.1 4.9E+02 0.011 24.8 8.5 35 53-90 176-211 (383)
151 TIGR00524 eIF-2B_rel eIF-2B al 24.1 2.1E+02 0.0045 26.2 5.9 51 158-210 194-246 (303)
152 PF02441 Flavoprotein: Flavopr 23.8 1.4E+02 0.003 23.1 4.2 41 161-203 73-118 (129)
153 PF01116 F_bP_aldolase: Fructo 23.6 57 0.0012 29.6 2.2 73 122-200 6-78 (287)
154 PF03652 UPF0081: Uncharacteri 23.5 73 0.0016 25.4 2.5 55 147-205 37-97 (135)
155 TIGR00715 precor6x_red precorr 23.4 3.4E+02 0.0074 24.1 7.1 64 132-205 167-233 (256)
156 cd07187 YvcK_like family of mo 23.4 1.9E+02 0.0042 26.5 5.6 62 137-204 151-216 (308)
157 PF13662 Toprim_4: Toprim doma 23.1 1.4E+02 0.003 21.1 3.7 32 52-83 46-79 (81)
158 PRK13057 putative lipid kinase 23.0 2.7E+02 0.0058 24.7 6.4 67 128-205 18-84 (287)
159 cd04795 SIS SIS domain. SIS (S 22.9 1.5E+02 0.0032 20.5 3.9 36 50-85 45-81 (87)
160 PRK13399 fructose-1,6-bisphosp 22.8 2.1E+02 0.0045 26.8 5.7 53 146-201 27-81 (347)
161 COG3046 Uncharacterized protei 22.5 5.5E+02 0.012 25.0 8.4 80 124-211 54-133 (505)
162 cd01998 tRNA_Me_trans tRNA met 22.5 6.2E+02 0.013 23.4 10.1 23 150-172 102-124 (349)
163 PRK10117 trehalose-6-phosphate 22.5 7.4E+02 0.016 24.2 9.8 103 51-173 253-363 (474)
164 TIGR00511 ribulose_e2b2 ribose 22.4 2.4E+02 0.0053 25.6 6.1 48 161-210 183-232 (301)
165 PRK07313 phosphopantothenoylcy 22.4 1.8E+02 0.0039 24.3 4.9 32 52-84 1-34 (182)
166 KOG2310 DNA repair exonuclease 22.3 76 0.0016 31.6 2.8 21 150-170 41-61 (646)
167 KOG3217 Protein tyrosine phosp 21.9 85 0.0019 25.8 2.6 50 42-91 75-125 (159)
168 COG1540 Uncharacterized protei 21.9 4.7E+02 0.01 23.3 7.3 49 125-173 92-149 (252)
169 COG0415 PhrB Deoxyribodipyrimi 21.9 7.5E+02 0.016 24.2 9.5 84 64-171 17-100 (461)
170 PRK07315 fructose-bisphosphate 21.9 2.2E+02 0.0047 25.9 5.6 57 144-201 25-83 (293)
171 COG0420 SbcD DNA repair exonuc 21.8 1.4E+02 0.0031 27.7 4.5 24 121-146 25-48 (390)
172 smart00732 YqgFc Likely ribonu 21.8 2.6E+02 0.0056 20.0 5.1 53 149-204 39-93 (99)
173 TIGR01918 various_sel_PB selen 21.5 1.4E+02 0.003 28.8 4.3 63 136-201 43-113 (431)
174 PRK04527 argininosuccinate syn 21.5 7.2E+02 0.016 23.8 10.8 24 149-172 97-120 (400)
175 PF06925 MGDG_synth: Monogalac 21.4 1.7E+02 0.0037 23.7 4.4 27 64-90 5-31 (169)
176 PRK00994 F420-dependent methyl 21.3 2.8E+02 0.0061 24.8 5.8 50 151-207 50-99 (277)
177 cd08173 Gro1PDH Sn-glycerol-1- 20.7 5E+02 0.011 23.6 7.9 43 150-203 67-110 (339)
178 PRK00509 argininosuccinate syn 20.7 7.4E+02 0.016 23.6 12.8 25 149-173 97-121 (399)
179 TIGR02113 coaC_strep phosphopa 20.4 1.7E+02 0.0037 24.4 4.3 31 53-84 1-33 (177)
180 TIGR01520 FruBisAldo_II_A fruc 20.3 3.1E+02 0.0068 25.8 6.3 56 146-203 36-107 (357)
181 PRK00766 hypothetical protein; 20.1 2E+02 0.0044 24.6 4.7 59 136-201 42-104 (194)
182 PRK10867 signal recognition pa 20.0 7.9E+02 0.017 23.7 11.1 89 55-175 104-197 (433)
183 PF09967 DUF2201: VWA-like dom 20.0 1.7E+02 0.0036 22.9 3.9 33 55-87 1-40 (126)
No 1
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.94 E-value=1.9e-25 Score=180.35 Aligned_cols=144 Identities=37% Similarity=0.577 Sum_probs=118.7
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+||||+|+|+ ..||+||+++|...+++|++|||.++........+. .+....+.+..++.+++.|+++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGK-------LEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccc-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999 999999999999999999999999864322211110 1122334455667778889999888
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+...+++++..++.|+++.++|+++|++.++|+||||+|+++++.++|++||++.+|++++++.||||||++|
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~~ 146 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeCc
Confidence 8778999999999887789999999999999999999999998887775447999999999999999999875
No 2
>PRK15456 universal stress protein UspG; Provisional
Probab=99.91 E-value=1.4e-23 Score=169.36 Aligned_cols=137 Identities=15% Similarity=0.141 Sum_probs=106.9
Q ss_pred CCeEEEEecCC--H--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKD--D--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 52 ~~~ILVaVD~S--~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
|++||||+|+| + ..|+++|+.+|+. .++|+++||+++..... ..... ...+.+.+...+.+++.|++
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~-~~~l~llhv~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQD-DGVIHLLHVLPGSASLS--LHRFA------ADVRRFEEHLQHEAEERLQT 72 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhc-CCeEEEEEEecCccccc--ccccc------cchhhHHHHHHHHHHHHHHH
Confidence 79999999998 3 9999999999986 46999999998653111 00000 01123445556667777888
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+.+.+...+++++..+..|+ +.++|++++++.++||||||+||++ +.++| .||++++|+++++ |||||||
T Consensus 73 ~~~~~~~~~~~v~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~l-lGS~a~~v~~~a~--~pVLvV~ 142 (142)
T PRK15456 73 MVSHFTIDPSRIKQHVRFGS-VRDEVNELAEELGADVVVIGSRNPS-ISTHL-LGSNASSVIRHAN--LPVLVVR 142 (142)
T ss_pred HHHHhCCCCcceEEEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCCC-cccee-cCccHHHHHHcCC--CCEEEeC
Confidence 87766556778888888875 5899999999999999999999987 55555 4999999999999 9999996
No 3
>PRK15005 universal stress protein F; Provisional
Probab=99.90 E-value=9.5e-23 Score=164.00 Aligned_cols=139 Identities=16% Similarity=0.246 Sum_probs=104.6
Q ss_pred CCeEEEEecCCH----HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 52 ~~~ILVaVD~S~----~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
|++||||+|+|+ ..|++||+.+|+..+++|+++||+++..... ..+..... .... .....+.+++.|++
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~-~~~~~~~~--~~~~----~~~~~~~~~~~l~~ 74 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYA-SLGLAYSA--ELPA----MDDLKAEAKSQLEE 74 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccc-cccccccc--cchH----HHHHHHHHHHHHHH
Confidence 789999999998 4899999999999999999999998642211 00100000 0001 12334455566777
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+.+.+...+++++..+..|. +.++|++++++.++||||||+|+ +.+.++++ ||++++|+++++ |||||||
T Consensus 75 ~~~~~~~~~~~~~~~v~~G~-p~~~I~~~a~~~~~DLIV~Gs~~-~~~~~~ll-GS~a~~vl~~a~--cpVlvVr 144 (144)
T PRK15005 75 IIKKFKLPTDRVHVHVEEGS-PKDRILELAKKIPADMIIIASHR-PDITTYLL-GSNAAAVVRHAE--CSVLVVR 144 (144)
T ss_pred HHHHhCCCCCceEEEEeCCC-HHHHHHHHHHHcCCCEEEEeCCC-CCchheee-cchHHHHHHhCC--CCEEEeC
Confidence 77766666778888888875 58999999999999999999995 44566554 999999999999 9999996
No 4
>PRK09982 universal stress protein UspD; Provisional
Probab=99.89 E-value=4.1e-22 Score=161.40 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=104.3
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
|.|++||||+|+|+ ..|+++|+.+|+..+++|+++||.++....... ..++ . .+...+..++.+++.|++
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~-~~~~----~---~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPG-IYFP----A---TEDILQLLKNKSDNKLYK 72 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchh-hhcc----c---hHHHHHHHHHHHHHHHHH
Confidence 46899999999999 999999999999999999999999864211100 0000 0 112224445556667777
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+...+. ...++..+..|. |++.|+++|++.++||||||+| ++++.+++ | ++++|+++++ |||||||..
T Consensus 73 ~~~~~~--~~~~~~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~-~~~~~~~~--~-va~~V~~~s~--~pVLvv~~~ 140 (142)
T PRK09982 73 LTKNIQ--WPKTKLRIERGE-MPETLLEIMQKEQCDLLVCGHH-HSFINRLM--P-AYRGMINKMS--ADLLIVPFI 140 (142)
T ss_pred HHHhcC--CCcceEEEEecC-HHHHHHHHHHHcCCCEEEEeCC-hhHHHHHH--H-HHHHHHhcCC--CCEEEecCC
Confidence 666553 234667777775 6999999999999999999987 77777765 5 9999999999 999999864
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.88 E-value=5.3e-22 Score=160.16 Aligned_cols=137 Identities=15% Similarity=0.138 Sum_probs=97.0
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
|.|++||||+|+|+ ..||++|+.+|+..+++|++|||..+.... ..+.. +.....+.+...+..++.|++
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~l~~ 72 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL--YTGLI------DVNLGDMQKRISEETHHALTE 72 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh--hhhhh------hcchHHHHHHHHHHHHHHHHH
Confidence 57899999999999 999999999999899999999995332110 00100 001112223333334444444
Q ss_pred HHHHhhcCCCcEEEEEE-EcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 128 YIRLCNDAKVTVETMLV-ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv-~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+. ...|+.+...++ .| .+.++|+++|++.++||||||+|+. .+. .+ ||++++|+++++ ||||+||..
T Consensus 73 ~~---~~~~~~~~~~~~~~G-~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~-~l--gSva~~v~~~a~--~pVLvv~~~ 140 (144)
T PRK15118 73 LS---TNAGYPITETLSGSG-DLGQVLVDAIKKYDMDLVVCGHHQD-FWS-KL--MSSARQLINTVH--VDMLIVPLR 140 (144)
T ss_pred HH---HhCCCCceEEEEEec-CHHHHHHHHHHHhCCCEEEEeCccc-HHH-HH--HHHHHHHHhhCC--CCEEEecCC
Confidence 43 345777544444 55 5699999999999999999999963 443 33 799999999999 999999863
No 6
>PRK10116 universal stress protein UspC; Provisional
Probab=99.86 E-value=2.4e-20 Score=149.84 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=102.8
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
|.|++|||++|+|+ ..||++|+.+|+..+++|+++|+++..... .. + .....+.+.+...++.++.|++
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~---~~-~-----~~~~~~~~~~~~~~~~~~~l~~ 71 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMY---NQ-F-----AAPMLEDLRSVMQEETQSFLDK 71 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccc---hh-h-----hHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999 999999999999999999999998754211 01 1 0112233334444445555555
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+.. ..+++.....+..+.+.++|++++++.++||||||+|+++.+.++ +|++++|+++++ |||||||..
T Consensus 72 ~~~---~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~---~s~a~~v~~~~~--~pVLvv~~~ 140 (142)
T PRK10116 72 LIQ---DADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA---SCSAKRVIASSE--VDVLLVPLT 140 (142)
T ss_pred HHH---hcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH---HHHHHHHHhcCC--CCEEEEeCC
Confidence 443 357765544444445699999999999999999999999877764 389999999999 999999863
No 7
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.86 E-value=2.4e-20 Score=145.81 Aligned_cols=137 Identities=23% Similarity=0.289 Sum_probs=96.7
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
+++||||+|+++ ..|++||+.+|...+++|++|||++....... +.. ........ ...... ......
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~--~~~-----~~~~~~~~---~~~~~~-~~~~~~ 70 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSF--SAA-----EDEESEEE---AEEEEQ-ARQAEA 70 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHH--HHH-----HHHHHHHH---HHHHHH-HHHHHH
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccccc--ccc-----cccccccc---cchhhh-hhhHHH
Confidence 699999999999 99999999999999999999999997632110 000 00000000 000000 000000
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 130 RLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
......+.......+..+++.++|++++++.++|+||||+++++.+.+++ .||++++|+++++ |||||||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~-~gs~~~~l~~~~~--~pVlvv~ 140 (140)
T PF00582_consen 71 EEAEAEGGIVIEVVIESGDVADAIIEFAEEHNADLIVMGSRGRSGLERLL-FGSVAEKLLRHAP--CPVLVVP 140 (140)
T ss_dssp HHHHHHTTSEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS-SHHHHHHHHHHTS--SEEEEEE
T ss_pred HHHhhhccceeEEEEEeeccchhhhhccccccceeEEEeccCCCCccCCC-cCCHHHHHHHcCC--CCEEEeC
Confidence 22222344444445555678999999999999999999999988888766 4999999999999 9999997
No 8
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.85 E-value=3.4e-20 Score=146.04 Aligned_cols=130 Identities=23% Similarity=0.259 Sum_probs=106.3
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+||||+|+++ ..+|++|..+|...+++|+++||++...... . . . .....+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~-~-~--------~------~~~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSS-P-S--------Q------LEVNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCC-c-c--------h------hHHHHHHHHHHHHHHHHH
Confidence 6999999999 9999999999999999999999998653111 0 0 0 012234455677777777
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+...|++++..+..++.+.++|++++++.++|+||||+++++.+.++++ ||++.+|+++++ |||++|+
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~l-Gs~~~~v~~~~~--~pvlvv~ 132 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLF-GGVIDQVLESAP--CDVAVVK 132 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceec-CchHHHHHhcCC--CCEEEeC
Confidence 7778999888887666789999999999999999999999988766554 999999999999 9999985
No 9
>PRK11175 universal stress protein UspE; Provisional
Probab=99.85 E-value=3.3e-20 Score=167.09 Aligned_cols=145 Identities=16% Similarity=0.185 Sum_probs=112.8
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
|.|++||||+|+|+ ..|+++|+.+|+..+++|++|||.++... ..+ +.+ ..+......+...++.++.|++
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~~a~l~ll~v~~~~~~-~~~-~~~-----~~~~~~~~~~~~~~~~~~~l~~ 73 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRNGGKITAFLPIYDFSY-EMT-TLL-----SPDEREAMRQGVISQRTAWIRE 73 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhcCCCEEEEEeccCchh-hhh-ccc-----chhHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999 99999999999999999999999865321 111 111 1112222223334445567777
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+...+...+++++..+..++.+.++|++++++.++||||||+++.+.+.+.++ ||++++|+++++ ||||+|+.+
T Consensus 74 ~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~-gs~~~~l~~~~~--~pvlvv~~~ 147 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIF-TPTDWHLLRKCP--CPVLMVKDQ 147 (305)
T ss_pred HHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhcc-ChhHHHHHhcCC--CCEEEeccc
Confidence 77766667899988777655679999999999999999999999988777764 899999999999 999999974
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.84 E-value=6.3e-20 Score=144.06 Aligned_cols=121 Identities=24% Similarity=0.280 Sum_probs=97.6
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+||||+|+|+ ..|++||+.+|...+++|++|||.++... . . .++.++.++.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~------~-----~------------~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLN------R-----L------------SEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccc------c-----C------------CHHHHHHHHHHHHH
Confidence 5999999999 99999999999999999999999986421 0 0 01123455555555
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhC-CCcceEEEEe
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNA-PDYCEVTIVH 202 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a-~~~cPVLVV~ 202 (256)
+...++. ..++.++++.++|++++++.++|+||||+++++.+.++++ ||++++|++++ + |||||++
T Consensus 58 ~~~~~~~--~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~-Gs~~~~v~~~a~~--~~v~v~~ 124 (124)
T cd01987 58 AEELGAE--VVTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFR-GSLVDRLLRRAGN--IDVHIVA 124 (124)
T ss_pred HHHcCCE--EEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhc-ccHHHHHHHhCCC--CeEEEeC
Confidence 5545554 3455666789999999999999999999999998888774 99999999999 8 9999985
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.77 E-value=6.9e-18 Score=151.94 Aligned_cols=140 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred CCCeEEEEecCCH---------HHHHHHHHHHhcCC-CCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD---------LHVLKWALDHAVSP-GARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNR 120 (256)
Q Consensus 51 ~~~~ILVaVD~S~---------~~AL~~Al~lA~~~-~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~ 120 (256)
.+++||||+|+|+ ..||++|+.+|... +++|+|+||++...... ...++.. ....+.+..++.
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~ 223 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINI--AIELPEF-----DPSVYNDAIRGQ 223 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhc--ccccccc-----chhhHHHHHHHH
Confidence 4689999999986 26999999999987 99999999997542100 0001100 011222333334
Q ss_pred HHHHHHHHHHHhhcCCCcE-EEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 121 RRNLLQKYIRLCNDAKVTV-ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 121 a~~~L~~~~~~~~~~gv~v-~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
..+.++++.+. .+++. ...+..| .+.++|++++++.++||||||+++++++.++|+ ||++++|+++++ ||||
T Consensus 224 ~~~~l~~~~~~---~~~~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~ll-GS~a~~v~~~~~--~pVL 296 (305)
T PRK11175 224 HLLAMKALRQK---FGIDEEQTHVEEG-LPEEVIPDLAEHLDAELVILGTVGRTGLSAAFL-GNTAEHVIDHLN--CDLL 296 (305)
T ss_pred HHHHHHHHHHH---hCCChhheeeccC-CHHHHHHHHHHHhCCCEEEECCCccCCCcceee-cchHHHHHhcCC--CCEE
Confidence 44455555543 35554 3445555 568999999999999999999999998888774 999999999999 9999
Q ss_pred EEeCC
Q 025234 200 IVHDG 204 (256)
Q Consensus 200 VV~~~ 204 (256)
+||..
T Consensus 297 vv~~~ 301 (305)
T PRK11175 297 AIKPD 301 (305)
T ss_pred EEcCC
Confidence 99753
No 12
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.75 E-value=8.6e-17 Score=124.42 Aligned_cols=128 Identities=30% Similarity=0.385 Sum_probs=105.2
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+||||+|+++ ..+++||..+|...+++|+++||.++...... .+.+....+.++.|+++...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAA----------------ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcch----------------hHHHHHHHHHHHHHHHHHHH
Confidence 5999999988 99999999999999999999999886532110 11123344556778888777
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+...++++...+..|.+ .++|.+++++.++|+||||+++++.+.+++ .|+++.+++++++ ||||+|
T Consensus 65 ~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~dlvvig~~~~~~~~~~~-~~~~~~~ll~~~~--~pvliv 130 (130)
T cd00293 65 LAEAGVKVETVVLEGDP-AEAILEAAEELGADLIVMGSRGRSGLRRLL-LGSVAERVLRHAP--CPVLVV 130 (130)
T ss_pred HhcCCCceEEEEecCCC-HHHHHHHHHHcCCCEEEEcCCCCCccceee-eccHHHHHHhCCC--CCEEeC
Confidence 76678998888888765 899999999999999999999998776655 4999999999999 999985
No 13
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.75 E-value=1.3e-16 Score=127.76 Aligned_cols=147 Identities=27% Similarity=0.292 Sum_probs=112.4
Q ss_pred CCCCeEEEEec-CCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVG-KDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (256)
Q Consensus 50 ~~~~~ILVaVD-~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~ 126 (256)
..+++||+++| +++ ..|+++|..++...++.+.+++|.+.............. .. .............+.++
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~ 77 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALAD----AP-IPLSEEELEEEAEELLA 77 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEeccccccccccccccc----ch-hhhhHHHHHHHHHHHHH
Confidence 45799999999 999 999999999999999999999999875322211110000 00 00111233445566777
Q ss_pred HHHHHhhcCCCc-EEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 127 KYIRLCNDAKVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 127 ~~~~~~~~~gv~-v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
...+.+...++. ++..+..|.+..++|++++.+.++|+||||+++++++++++ +||++++|+++++ |||++|+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l-lGsvs~~v~~~~~--~pVlvv~~~ 153 (154)
T COG0589 78 EAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLL-LGSVAEKVLRHAP--CPVLVVRSE 153 (154)
T ss_pred HHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCcccccee-eehhHHHHHhcCC--CCEEEEccC
Confidence 777777777887 48888888776899999999999999999999999888855 5999999999999 999999863
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.45 E-value=1.6e-12 Score=120.47 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=89.0
Q ss_pred CCCCCeEEEEecCCH--HHHHHHHHHHhcCC--CCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGKDD--LHVLKWALDHAVSP--GARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNL 124 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~--~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~ 124 (256)
.+.|+|||||+|+|+ ++|+++|+.+|+.. +++|++|||.+....... . . ......+++
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~------~----~--------~~~~~~eel 63 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE------G----Q--------DELAAAEEL 63 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc------h----h--------HHHHHHHHH
Confidence 367999999999999 99999999999874 699999999986421110 0 0 011122223
Q ss_pred HHHHHHHhh------cCCCcEEEEEEEc-------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhh
Q 025234 125 LQKYIRLCN------DAKVTVETMLVES-------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKN 191 (256)
Q Consensus 125 L~~~~~~~~------~~gv~v~~~lv~g-------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~ 191 (256)
+++..+.+. ..|++++..++.+ ++++++|+++|+++++||||||..-..+...-++ ---+.-+.+
T Consensus 64 le~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~~~~~--~~~~~~~~~ 141 (357)
T PRK12652 64 LERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGTAPML--QPLERELAR 141 (357)
T ss_pred HHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCccc--chHHHHHHh
Confidence 333333222 2589999888873 4679999999999999999999986533222221 223555666
Q ss_pred CCCcceEEEEe
Q 025234 192 APDYCEVTIVH 202 (256)
Q Consensus 192 a~~~cPVLVV~ 202 (256)
+. |.+=..|
T Consensus 142 ~~--~~~~~~~ 150 (357)
T PRK12652 142 AG--ITYEEAP 150 (357)
T ss_pred cC--CceecCC
Confidence 66 6664443
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=99.23 E-value=1.3e-10 Score=119.70 Aligned_cols=125 Identities=19% Similarity=0.247 Sum_probs=98.2
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
...+|||||++++ ..++++|.++|...++++++|||..+.... ++. . .++.+.+.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~-----------~~~--------~----~~~~l~~~ 305 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR-----------LPE--------K----KRRAILSA 305 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc-----------CCH--------H----HHHHHHHH
Confidence 4578999999999 999999999999999999999998764210 001 1 11223333
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 129 IRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
.++++..|.+ ...+.|++++++|+++|++.+++.||||.++++++ |..||+++++++.++ +++|.||+..
T Consensus 306 ~~lA~~lGa~--~~~~~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~~~~s~~~~l~r~~~-~idi~iv~~~ 375 (895)
T PRK10490 306 LRLAQELGAE--TATLSDPAEEKAVLRYAREHNLGKIIIGRRASRRW---WRRESFADRLARLGP-DLDLVIVALD 375 (895)
T ss_pred HHHHHHcCCE--EEEEeCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---ccCCCHHHHHHHhCC-CCCEEEEeCC
Confidence 3466666766 45667889999999999999999999999998765 335899999999998 8999999753
No 16
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.07 E-value=1.9e-09 Score=107.15 Aligned_cols=130 Identities=23% Similarity=0.210 Sum_probs=106.7
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
....+|||||++++ ...+++|.++|.+.++++++|||..+..... .+..++.|.+
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~-----------------------~~~~~~~l~~ 302 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRL-----------------------SEKEARRLHE 302 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccc-----------------------cHHHHHHHHH
Confidence 34578999999999 9999999999999999999999998763210 1122345666
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcc
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 206 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~ 206 (256)
..++++..|- ++..+.|++++++|+++|+..++..||||.+.+++|+++| .||..+++++.++ ++.|.+|+....
T Consensus 303 ~~~Lae~lGa--e~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~-~~~l~~~L~~~~~-~idv~ii~~~~~ 377 (890)
T COG2205 303 NLRLAEELGA--EIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLF-KGSLADRLAREAP-GIDVHIVALDAP 377 (890)
T ss_pred HHHHHHHhCC--eEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh-cccHHHHHHhcCC-CceEEEeeCCCC
Confidence 6667765564 5566788899999999999999999999999999998877 4899999999998 889999987543
No 17
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=98.08 E-value=1.5e-05 Score=58.52 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=41.7
Q ss_pred ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccC-ChHHHHHhhCCCcceEEE
Q 025234 148 ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKL-SKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 148 ~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~G-Sva~~Vl~~a~~~cPVLV 200 (256)
.....+.+.+++.++|+|++|++........+ +| +++.++++.++ |||+.
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~-~~~~~~~~~~~~~~--~~vl~ 85 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL-GASANVLVVIKGAG--IPVLT 85 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc-CchhhhhhcccccC--CceeC
Confidence 34677888888899999999999987766544 46 89999999999 99974
No 18
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.78 E-value=0.014 Score=60.38 Aligned_cols=148 Identities=13% Similarity=0.150 Sum_probs=83.0
Q ss_pred CCCCCeEEEEecCCH--HHHHHHHHHHhc--CCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGKDD--LHVLKWALDHAV--SPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNL 124 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~--~~AL~~Al~lA~--~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~ 124 (256)
....-|||+|+...+ ...+..+-.... +..-.++++|.++..... .+.- +.. +........+ .......+++
T Consensus 455 ~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~-~~~l-~~h-~~~~~~~~~~-~~~~~~~~~i 530 (832)
T PLN03159 455 HDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRA-SAML-IVH-NTRKSGRPAL-NRTQAQSDHI 530 (832)
T ss_pred CCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCC-ccce-eee-eccccccccc-ccccccccHH
Confidence 345678999999877 666554422111 233589999999854321 1100 000 0000000000 0001112344
Q ss_pred HHHHHHHhhc-CCCcEEEEEE--EcCChHHHHHHHhhhcCCCEEEEcCcCCCccchh------hccCChHHHHHhhCCCc
Q 025234 125 LQKYIRLCND-AKVTVETMLV--ESKATAKAILDLISVANVTSLVMGTKLSPRSRLF------TKKLSKGEFVKKNAPDY 195 (256)
Q Consensus 125 L~~~~~~~~~-~gv~v~~~lv--~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~------~l~GSva~~Vl~~a~~~ 195 (256)
+..+....+. .++.++.... .-....+.|+..|.+..+++||++-|.+...... . .+.+..+|++++|
T Consensus 531 ~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~~dg~~~~~~~~-~r~~n~~VL~~Ap-- 607 (832)
T PLN03159 531 INAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQTVDGGMEATNPA-FRGVNQNVLANAP-- 607 (832)
T ss_pred HHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccCCCCCccccCch-HHHHHHHHHccCC--
Confidence 4444443322 2566664443 3347899999999999999999999975322211 1 1577899999999
Q ss_pred ceEEEEeC
Q 025234 196 CEVTIVHD 203 (256)
Q Consensus 196 cPVLVV~~ 203 (256)
|+|-|.=+
T Consensus 608 CsVgIlVD 615 (832)
T PLN03159 608 CSVGILVD 615 (832)
T ss_pred CCEEEEEe
Confidence 99965433
No 19
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.12 E-value=0.17 Score=52.48 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCeEEEEe-cCCH-HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCc--cccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAV-GKDD-LHVLKWALDHAVSPGARIYLVHVFSPVTYINTP--VGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 52 ~~~ILVaV-D~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~--~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
..+|.+.- .|.+ ++||.+|.+++..++-.++++|..+........ ....+.....++ .....+.+++.-++.+++
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~D~~~~~e 708 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPT-VETDGKKERQLDEEYINE 708 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCCCeEEEEEEEEccccccccccccccccccccccc-ccccchhHHHHHHHHHHH
Confidence 45777777 5555 999999999999999999999998753211100 000000000000 000001122233456777
Q ss_pred HHHHhhc-CCCcEEEEEEEcCChHHHHHHHhhh--cCCCEEEEcCcCCC------ccchhh---ccCChHHHHHhh-CCC
Q 025234 128 YIRLCND-AKVTVETMLVESKATAKAILDLISV--ANVTSLVMGTKLSP------RSRLFT---KKLSKGEFVKKN-APD 194 (256)
Q Consensus 128 ~~~~~~~-~gv~v~~~lv~g~~v~eaIl~~a~e--~~aDLIVmGs~~~~------~~~~~~---l~GSva~~Vl~~-a~~ 194 (256)
|...... ..+.+..+++.. +.+.++.+++ .+.||+|+|+++.. ++..|- -+|-+.+.+... ...
T Consensus 709 f~~~~~~~~~v~y~E~~V~~---~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~~~ 785 (832)
T PLN03159 709 FRARNAGNESIVYTEKVVSN---GEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDFAA 785 (832)
T ss_pred HHHhcCCCCceEEEEEecCC---HHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCCCC
Confidence 7766532 346666666642 2333333333 24899999986432 112211 136666666642 111
Q ss_pred cceEEEEeCCc
Q 025234 195 YCEVTIVHDGK 205 (256)
Q Consensus 195 ~cPVLVV~~~~ 205 (256)
...||||....
T Consensus 786 ~~SVLVvQQ~~ 796 (832)
T PLN03159 786 TVSVLVVQQYV 796 (832)
T ss_pred ceeEEEEEeec
Confidence 26899998754
No 20
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=95.61 E-value=0.19 Score=41.93 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=57.8
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+|+|++.|.. ..++..+...+...+.++.++||-..... . ..+..+.....
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~---------~------------------~~~~~~~~~~~ 53 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRP---------E------------------SDEEAEFVQQF 53 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCh---------h------------------HHHHHHHHHHH
Confidence 5899999988 55565555555555667999998653210 0 00112223333
Q ss_pred hhcCCCcEEEEEEEc--------CChH--------HHHHHHhhhcCCCEEEEcCcCCCc
Q 025234 132 CNDAKVTVETMLVES--------KATA--------KAILDLISVANVTSLVMGTKLSPR 174 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g--------~~v~--------eaIl~~a~e~~aDLIVmGs~~~~~ 174 (256)
|+..|+++...-+.. .... ..+.+++++++++.|+.|.+....
T Consensus 54 ~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~ 112 (189)
T TIGR02432 54 CKKLNIPLEIKKVDVKALAKGKKKNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQ 112 (189)
T ss_pred HHHcCCCEEEEEecchhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHH
Confidence 444577655443321 1122 578889999999999999997643
No 21
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=94.32 E-value=0.58 Score=39.08 Aligned_cols=93 Identities=12% Similarity=0.268 Sum_probs=51.3
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+|+||+.|.. ..+|.....+....+-++.++||--..... .. ...+.+. +.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~-------------s~-----------~~~~~v~---~~ 53 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREE-------------SD-----------EEAEFVE---EI 53 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCC-------------HH-----------HHHHHHH---HH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcc-------------cc-----------hhHHHHH---HH
Confidence 6999999988 555555555555567799999998653210 00 0112333 34
Q ss_pred hhcCCCcEEEEEEE-----cCCh--------HHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 132 CNDAKVTVETMLVE-----SKAT--------AKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 132 ~~~~gv~v~~~lv~-----g~~v--------~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
|...|++.....+. +... ...+.++|.+.+++.|++|.|...
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD 108 (182)
T PF01171_consen 54 CEQLGIPLYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDD 108 (182)
T ss_dssp HHHTT-EEEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHH
T ss_pred HHhcCCceEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCc
Confidence 44567777665554 1111 256778999999999999999754
No 22
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=93.75 E-value=0.87 Score=37.65 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=55.2
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+|+|++.|.. .-++.++.......+.++.++|+-..... . ..+.++...+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~--------------~-------------~~~~~~~~~~~ 53 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRP--------------E-------------SDEEAAFVADL 53 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCc--------------h-------------HHHHHHHHHHH
Confidence 5899999988 55555554444444678999999643210 0 01122222233
Q ss_pred hhcCCCcEEEE--EE-EcCCh----------HHHHHHHhhhcCCCEEEEcCcCCCc
Q 025234 132 CNDAKVTVETM--LV-ESKAT----------AKAILDLISVANVTSLVMGTKLSPR 174 (256)
Q Consensus 132 ~~~~gv~v~~~--lv-~g~~v----------~eaIl~~a~e~~aDLIVmGs~~~~~ 174 (256)
|...|++.... .. .+... ...+.++|.+.+++.|+.|++....
T Consensus 54 ~~~~~i~~~~~~~~~~~~~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~ 109 (185)
T cd01992 54 CAKLGIPLYILVVALAPKPGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQ 109 (185)
T ss_pred HHHcCCcEEEEeeccccCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHH
Confidence 33456766544 11 11110 1567789999999999999987654
No 23
>PRK12342 hypothetical protein; Provisional
Probab=92.86 E-value=1 Score=40.25 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=62.5
Q ss_pred CCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 025234 61 KDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVT 138 (256)
Q Consensus 61 ~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~ 138 (256)
.++ .+||+.|+++- ..+.+|+++++-++... ...++.+...+-...++-
T Consensus 33 iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a~----------------------------~~~l~r~alamGaD~avl 83 (254)
T PRK12342 33 ISQFDLNAIEAASQLA-TDGDEIAALTVGGSLLQ----------------------------NSKVRKDVLSRGPHSLYL 83 (254)
T ss_pred CChhhHHHHHHHHHHh-hcCCEEEEEEeCCChHh----------------------------HHHHHHHHHHcCCCEEEE
Confidence 455 89999999987 57899999998765310 011334444432222333
Q ss_pred EEEEEEEcCCh---HHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceE
Q 025234 139 VETMLVESKAT---AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 198 (256)
Q Consensus 139 v~~~lv~g~~v---~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPV 198 (256)
+......|.++ +..|..++++.++|||+.|...-.... |-+.-.+..... .|.
T Consensus 84 i~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s~D~~t-----gqvg~~lA~~Lg--~P~ 139 (254)
T PRK12342 84 VQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYA-----QQVGLLLGELLQ--LPV 139 (254)
T ss_pred EecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCC-----CCHHHHHHHHhC--CCc
Confidence 32222234444 678889999889999999987754322 445555555555 554
No 24
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=92.04 E-value=1.4 Score=39.35 Aligned_cols=100 Identities=15% Similarity=0.040 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhcCCC-CEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q 025234 64 LHVLKWALDHAVSPG-ARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETM 142 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~-a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~ 142 (256)
.+||+.|+++-...+ .+|++|++-++... ....|.+...+-...++-+...
T Consensus 39 ~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~----------------------------~~~~lr~aLAmGaD~avli~d~ 90 (256)
T PRK03359 39 LNAIEAACQLKQQAAEAQVTALSVGGKALT----------------------------NAKGRKDVLSRGPDELIVVIDD 90 (256)
T ss_pred HHHHHHHHHHhhhcCCCEEEEEEECCcchh----------------------------hHHHHHHHHHcCCCEEEEEecC
Confidence 999999999988754 89999999775410 0123444444322222322222
Q ss_pred EEEcCC---hHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceE
Q 025234 143 LVESKA---TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 198 (256)
Q Consensus 143 lv~g~~---v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPV 198 (256)
-..|.+ .+..|..++++.++|||+.|........ |-+.-.|..... .|.
T Consensus 91 ~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~t-----gqvg~~lAe~Lg--~P~ 142 (256)
T PRK03359 91 QFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYA-----QQVGLLVGEILN--IPA 142 (256)
T ss_pred cccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCC-----CcHHHHHHHHhC--CCc
Confidence 122222 2677888889889999999988754322 445555666555 553
No 25
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=90.25 E-value=2.6 Score=37.76 Aligned_cols=100 Identities=13% Similarity=0.140 Sum_probs=63.3
Q ss_pred ecCCH--HHHHHHHHHHhc-CCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 025234 59 VGKDD--LHVLKWALDHAV-SPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDA 135 (256)
Q Consensus 59 VD~S~--~~AL~~Al~lA~-~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~ 135 (256)
...++ ..|++.|+++.. ..+.+|++|++-++.. ++.|.+... .
T Consensus 33 ~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a------------------------------~~~lr~aLA----m 78 (260)
T COG2086 33 LSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQA------------------------------EEALREALA----M 78 (260)
T ss_pred cccChhhHHHHHHHHHhhccCCCceEEEEEecchhh------------------------------HHHHHHHHh----c
Confidence 33455 999999999998 5899999999976531 123333222 3
Q ss_pred CCcEEEEEE----EcC---ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 136 KVTVETMLV----ESK---ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 136 gv~v~~~lv----~g~---~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
|+.--.++. .+. ..+.+|...+++.+.|||++|...-..-. |-+...+..... .|.+
T Consensus 79 GaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t-----~qvg~~lAe~Lg--~P~~ 142 (260)
T COG2086 79 GADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDT-----GQVGPLLAELLG--WPQV 142 (260)
T ss_pred CCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCc-----cchHHHHHHHhC--Ccee
Confidence 544222222 222 23788999999999999999998753322 344455555555 5543
No 26
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=88.22 E-value=9.2 Score=31.25 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=19.3
Q ss_pred HHHHHHhhhcCCCEEEEcCcCCC
Q 025234 151 KAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
..+.+.|++.+++.|+.|.+..-
T Consensus 96 ~~l~~~a~~~g~~~l~~Gh~~dD 118 (185)
T cd01993 96 GLLNKIAKELGADKLATGHNLDD 118 (185)
T ss_pred HHHHHHHHHcCCCEEEEcCChHH
Confidence 56778899999999999998753
No 27
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=85.43 E-value=7.6 Score=34.60 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=27.7
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
..+|+||+.|.. -.+|-+.+...... -.+.++||-...
T Consensus 21 ~~~ilVavSGGkDS~~ll~~L~~l~~~-~~~~a~~Vd~~~ 59 (298)
T COG0037 21 EYKILVAVSGGKDSLALLHLLKELGRR-IEVEAVHVDHGL 59 (298)
T ss_pred CCeEEEEeCCChHHHHHHHHHHHhccC-ceEEEEEecCCC
Confidence 589999999988 55555555554433 789999997754
No 28
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=82.78 E-value=9.6 Score=31.00 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..| ...+..|..|.|+++........| + ....-..+-|..+...+...|+. -.+
T Consensus 14 N~aL~~A----~~~~~~v~~vfv~d~~~~~~~~~~--------~--------~r~~Fl~~sL~~L~~~L~~~g~~--L~v 71 (165)
T PF00875_consen 14 NPALHAA----AQNGDPVLPVFVFDPEEFHPYRIG--------P--------RRRRFLLESLADLQESLRKLGIP--LLV 71 (165)
T ss_dssp -HHHHHH----HHTTSEEEEEEEE-HHGGTTCSSC--------H--------HHHHHHHHHHHHHHHHHHHTTS---EEE
T ss_pred hHHHHHH----HHcCCCeEEEEEecccccccccCc--------c--------hHHHHHHHHHHHHHHHHHhcCcc--eEE
Confidence 3455544 446788999999997621111011 1 11222334455555555556765 356
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCccccc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVD 209 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~~~~ 209 (256)
+.|+ +.+.|.+++++.+++.|+.-..-....++.- -.+ ...+.... |.+..+........
T Consensus 72 ~~g~-~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd--~~v-~~~l~~~~--i~~~~~~~~~L~~~ 131 (165)
T PF00875_consen 72 LRGD-PEEVLPELAKEYGATAVYFNEEYTPYERRRD--ERV-RKALKKHG--IKVHTFDDHTLVPP 131 (165)
T ss_dssp EESS-HHHHHHHHHHHHTESEEEEE---SHHHHHHH--HHH-HHHHHHTT--SEEEEE--SSSS-H
T ss_pred Eecc-hHHHHHHHHHhcCcCeeEeccccCHHHHHHH--HHH-HHHHHhcc--eEEEEECCcEEEec
Confidence 6765 5899999999999999998765433222211 122 34455566 89988876654443
No 29
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=81.96 E-value=26 Score=28.40 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=61.3
Q ss_pred eEEEEecCC-----H--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKD-----D--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (256)
Q Consensus 54 ~ILVaVD~S-----~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~ 126 (256)
+|||-++-. + ..+|..|.+++...+.++.++.+-+... ..+.|.
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~-----------------------------~~~~l~ 51 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEE-----------------------------AAEALR 51 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCC-----------------------------HHHHHH
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchh-----------------------------hHHHHh
Confidence 466666643 3 8999999999999899999998763121 011222
Q ss_pred HHHHHhhcCCCcEEEEEEEc-------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 127 KYIRLCNDAKVTVETMLVES-------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g-------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
+.. ...|+.--..+-.. ....+.|.+.+++.++|+|++|....+ +.++-++..+.. +|++
T Consensus 52 ~~l---~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g--------~~la~~lA~~L~--~~~v 118 (164)
T PF01012_consen 52 KAL---AKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFG--------RDLAPRLAARLG--APLV 118 (164)
T ss_dssp HHH---HSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHH--------HHHHHHHHHHHT---EEE
T ss_pred hhh---hhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCC--------CcHHHHHHHHhC--CCcc
Confidence 222 22455422222111 124678999999999999999986533 234456666665 6654
No 30
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=81.40 E-value=26 Score=30.91 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=53.9
Q ss_pred CCCCeEEEEecCCH-HHHHHHHHHHhc-CC--CCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD-LHVLKWALDHAV-SP--GARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLL 125 (256)
Q Consensus 50 ~~~~~ILVaVD~S~-~~AL~~Al~lA~-~~--~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L 125 (256)
....+|+||+.|.. --+|-+.+.... .. +-+|.++|+-.... + .++ +.+
T Consensus 27 ~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~------~------~~~---------------~~~ 79 (258)
T PRK10696 27 EEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQP------G------FPE---------------HVL 79 (258)
T ss_pred CCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCC------C------CCH---------------HHH
Confidence 34679999999988 444444443333 22 34788888754221 0 000 011
Q ss_pred HHHHHHhhcCCCcEEEEEEE-----------cCCh--------HHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 126 QKYIRLCNDAKVTVETMLVE-----------SKAT--------AKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~-----------g~~v--------~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
.+.|...|+++...-.. +..+ ...+.++|.+.++|.|++|.+...
T Consensus 80 ---~~~~~~lgI~~~v~~~~~~~~~~~~~~~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD 143 (258)
T PRK10696 80 ---PEYLESLGVPYHIEEQDTYSIVKEKIPEGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDD 143 (258)
T ss_pred ---HHHHHHhCCCEEEEEecchhhhhhhhccCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHH
Confidence 23344456665443221 1110 245678899999999999999764
No 31
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=81.15 E-value=4.6 Score=36.78 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=40.2
Q ss_pred CCcEEEEEEEcCChHHHHHHHhhhc-------CCCEEEEcCcCCCccchhhccC-ChHHHHHhhCCCcceEEEEeC
Q 025234 136 KVTVETMLVESKATAKAILDLISVA-------NVTSLVMGTKLSPRSRLFTKKL-SKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 136 gv~v~~~lv~g~~v~eaIl~~a~e~-------~aDLIVmGs~~~~~~~~~~l~G-Sva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+.+....+.|......|++..+.. ++|+||+++.|.+....+.+-- .++. -+-.++ +||+.-=.
T Consensus 43 ~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~~FN~e~var-ai~~~~--~PvisaIG 115 (319)
T PF02601_consen 43 EIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLWAFNDEEVAR-AIAASP--IPVISAIG 115 (319)
T ss_pred EEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhcccChHHHHH-HHHhCC--CCEEEecC
Confidence 3445566777877778887766554 3899999998876433221111 3333 334677 88876544
No 32
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=80.95 E-value=21 Score=31.37 Aligned_cols=24 Identities=13% Similarity=0.093 Sum_probs=19.2
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
...+.++|++.+++.|+.|++...
T Consensus 96 ~~~l~~~A~~~g~~~I~~G~n~dD 119 (252)
T TIGR00268 96 LSILVKEAEKRGYDVVVDGTNADD 119 (252)
T ss_pred HHHHHHHHHHcCCCEEEECCCCcc
Confidence 456678899999999999987653
No 33
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=80.73 E-value=18 Score=34.75 Aligned_cols=85 Identities=8% Similarity=0.029 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+..|...+.+|+.|.++++..... + .....-..+-|..+.+.+...|+.. .+
T Consensus 38 N~aL~~A~~~a~~~~~~vl~vyi~dp~~~~~---~----------------~~r~~Fl~esL~~L~~~L~~~g~~L--~v 96 (454)
T TIGR00591 38 NWALIAAQTLALKKKLPLHVCFCLVDFFLAA---T----------------RRHYFFMLGGLDEVANECERLIIPF--HL 96 (454)
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEeCCCcccc---c----------------HHHHHHHHHHHHHHHHHHHHcCCce--EE
Confidence 6688888876655567899999998753211 1 1112223344555555555567665 34
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~ 170 (256)
..|. +.+.|.+++++.+++.|+.-..
T Consensus 97 ~~g~-~~~~l~~l~~~~~i~~V~~~~~ 122 (454)
T TIGR00591 97 LDGP-PKELLPYFVDLHAAAAVVTDFS 122 (454)
T ss_pred eecC-hHHHHHHHHHHcCCCEEEEecc
Confidence 5665 4899999999999999998775
No 34
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=79.70 E-value=25 Score=34.29 Aligned_cols=118 Identities=19% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
.-.++|+..+.|. ...|..| ...+-.+.++-|-..+.. +.+..|..+
T Consensus 358 ~dgdviltyg~s~vV~~ill~A----~~~~k~frVvVVDSRP~~---------------------------EG~~~lr~L 406 (556)
T KOG1467|consen 358 QDGDVLLTYGSSSVVNMILLEA----KELGKKFRVVVVDSRPNL---------------------------EGRKLLRRL 406 (556)
T ss_pred hcCCEEEEecchHHHHHHHHHH----HHhCcceEEEEEeCCCCc---------------------------chHHHHHHH
Confidence 3467888889888 5555554 445555655545433211 112344444
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchh-hccCChHHHHHhhCCCcceEEEEeCCccc
Q 025234 129 IRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLF-TKKLSKGEFVKKNAPDYCEVTIVHDGKKV 207 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~-~l~GSva~~Vl~~a~~~cPVLVV~~~~~~ 207 (256)
. ..|+++...++.+ ..-|. ..++.|.+|.|.--...-+ -..|...-.++-++. .+||||++....+
T Consensus 407 v----~~GinctYv~I~a---~syim-----~evtkvfLGahailsNG~vysR~GTa~valvAna~-nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 407 V----DRGINCTYVLINA---ASYIM-----LEVTKVFLGAHAILSNGAVYSRVGTACVALVANAF-NVPVLVCCEAYKF 473 (556)
T ss_pred H----HcCCCeEEEEehh---HHHHH-----HhcceeeechhhhhcCcchhhhcchHHHHHHhccc-CCCEEEEechhhh
Confidence 3 3699999998875 34444 3568999999984211111 112544444444443 4999999998777
Q ss_pred ccchh
Q 025234 208 VDGQK 212 (256)
Q Consensus 208 ~~~~~ 212 (256)
..|-+
T Consensus 474 ~eRvQ 478 (556)
T KOG1467|consen 474 HERVQ 478 (556)
T ss_pred hhhhh
Confidence 66654
No 35
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=75.79 E-value=25 Score=34.08 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+. .+.+|..|.|+++........| . ....-..+-|.++.+.+...|++. .+
T Consensus 16 N~AL~~A~~----~~~~vl~vfi~dp~~~~~~~~~--------~--------~r~~Fl~esL~~L~~~L~~~G~~L--~v 73 (471)
T TIGR03556 16 NIGLAAARQ----QSAKVVGLFCLDPNILQADDMA--------P--------ARVAYLIGCLQELQQRYQQAGSQL--LI 73 (471)
T ss_pred HHHHHHHHh----cCCCEEEEEEEchhhhccccCC--------H--------HHHHHHHHHHHHHHHHHHHCCCCe--EE
Confidence 446666653 4567999999987522111111 0 011222334445555555567665 45
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
..|. +.+.|.+++++.+++.|+.-..-.
T Consensus 74 ~~G~-p~~vl~~l~~~~~~~~V~~~~~~~ 101 (471)
T TIGR03556 74 LQGD-PVQLIPQLAQQLGAKAVYWNLDVE 101 (471)
T ss_pred EECC-HHHHHHHHHHHcCCCEEEEecccC
Confidence 5665 589999999999999999766543
No 36
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=75.20 E-value=19 Score=29.82 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHh---hhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLI---SVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a---~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
.+++..+.+.+.|++++..++......+.+.+|+ ++.++..||-|+.+...+ . | -+.-.++ .||+-
T Consensus 17 ~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHL----P-G----mvAa~T~--lPViG 85 (162)
T COG0041 17 TMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHL----P-G----MVAAKTP--LPVIG 85 (162)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhc----c-h----hhhhcCC--CCeEe
Confidence 3344445555579999999998765567666666 557778899888664322 2 3 3444677 99999
Q ss_pred EeCC
Q 025234 201 VHDG 204 (256)
Q Consensus 201 V~~~ 204 (256)
||-.
T Consensus 86 VPv~ 89 (162)
T COG0041 86 VPVQ 89 (162)
T ss_pred ccCc
Confidence 9875
No 37
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=75.15 E-value=45 Score=27.44 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.4
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
.+.|.+++++.++|+|++|....
T Consensus 80 a~~l~~~i~~~~p~~Vl~g~t~~ 102 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSI 102 (181)
T ss_pred HHHHHHHHHHhCCCEEEECCccc
Confidence 57788999999999999999876
No 38
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=71.77 E-value=17 Score=34.76 Aligned_cols=73 Identities=15% Similarity=0.080 Sum_probs=42.5
Q ss_pred CcEEEEEEEcCChHHHHHHHhhhcC---CCEEEEcCcCCCccchhhccC-ChHHHHHhhCCCcceEEEEeCCcccccchh
Q 025234 137 VTVETMLVESKATAKAILDLISVAN---VTSLVMGTKLSPRSRLFTKKL-SKGEFVKKNAPDYCEVTIVHDGKKVVDGQK 212 (256)
Q Consensus 137 v~v~~~lv~g~~v~eaIl~~a~e~~---aDLIVmGs~~~~~~~~~~l~G-Sva~~Vl~~a~~~cPVLVV~~~~~~~~~~~ 212 (256)
+.+....+.|......|++..+..+ +|.||+|+.|.+.-..+.+-- .++.. +-.++ +||+.-=....+.+--+
T Consensus 165 ~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~a-i~~~~--~Pvis~IGHE~D~tl~D 241 (438)
T PRK00286 165 VIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARA-IAASR--IPVISAVGHETDFTIAD 241 (438)
T ss_pred EEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHH-HHcCC--CCEEEeccCCCCccHHH
Confidence 3444556778777788887666544 499999998876433221111 33333 33667 88876544333333333
No 39
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=70.92 E-value=48 Score=27.44 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=46.4
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhh---hcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~---e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
.+++....++..|++++..+.......+.+.++++ +.+++.||.+......+. .-|.-+++ .||+-
T Consensus 13 ~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lp---------gvva~~t~--~PVIg 81 (156)
T TIGR01162 13 TMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLP---------GMVAALTP--LPVIG 81 (156)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhH---------HHHHhccC--CCEEE
Confidence 34444455555789999888765444566666654 467888888875543322 23455777 99999
Q ss_pred EeCCc
Q 025234 201 VHDGK 205 (256)
Q Consensus 201 V~~~~ 205 (256)
||...
T Consensus 82 vP~~~ 86 (156)
T TIGR01162 82 VPVPS 86 (156)
T ss_pred ecCCc
Confidence 99754
No 40
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=70.62 E-value=21 Score=34.24 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=43.4
Q ss_pred CCcEEEEEEEcCChHHHHHHHhhh----cCCCEEEEcCcCCCccchhhccC-ChHHHHHhhCCCcceEEEEeCCcccccc
Q 025234 136 KVTVETMLVESKATAKAILDLISV----ANVTSLVMGTKLSPRSRLFTKKL-SKGEFVKKNAPDYCEVTIVHDGKKVVDG 210 (256)
Q Consensus 136 gv~v~~~lv~g~~v~eaIl~~a~e----~~aDLIVmGs~~~~~~~~~~l~G-Sva~~Vl~~a~~~cPVLVV~~~~~~~~~ 210 (256)
.+.+....+.|......|++..+. .++|.||+|+.|.+.-..+.+-- .++. -+-.++ +||+.-=....+.+-
T Consensus 158 ~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~Fn~e~~~r-ai~~~~--~Pvis~iGHe~D~ti 234 (432)
T TIGR00237 158 KVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSFNDEKVAR-AIFLSK--IPIISAVGHETDFTI 234 (432)
T ss_pred eEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhcCcHHHHH-HHHcCC--CCEEEecCcCCCccH
Confidence 344555567787777777766553 23799999998876543222111 2333 334677 888765443344443
Q ss_pred hhhh
Q 025234 211 QKVA 214 (256)
Q Consensus 211 ~~~~ 214 (256)
-+-.
T Consensus 235 ~D~v 238 (432)
T TIGR00237 235 SDFV 238 (432)
T ss_pred HHHh
Confidence 3333
No 41
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=67.45 E-value=99 Score=28.95 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=24.9
Q ss_pred CCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 50 AAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 50 ~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
+...++||++.|.- -.++-|.+ ...|.++.++|+...
T Consensus 170 g~~~kvlvllSGGiDS~vaa~ll---~krG~~V~av~~~~~ 207 (371)
T TIGR00342 170 GTQGKVLALLSGGIDSPVAAFMM---MKRGCRVVAVHFFNE 207 (371)
T ss_pred CcCCeEEEEecCCchHHHHHHHH---HHcCCeEEEEEEeCC
Confidence 44578999999877 33333333 224889999999743
No 42
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=67.29 E-value=72 Score=34.46 Aligned_cols=155 Identities=15% Similarity=0.076 Sum_probs=86.2
Q ss_pred CCCeEEEE-ecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVA-VGKDD-LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 51 ~~~~ILVa-VD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
.|.+.+++ |.+.. .-|++.|. .|...|-.|.+| | |.. . . +++-.+.|
T Consensus 615 pMDRLiCGDVGFGKTEVAmRAAF-kAV~~GKQVAvL-V--PTT-l----------------------L----A~QHy~tF 663 (1139)
T COG1197 615 PMDRLICGDVGFGKTEVAMRAAF-KAVMDGKQVAVL-V--PTT-L----------------------L----AQQHYETF 663 (1139)
T ss_pred cchheeecCcCCcHHHHHHHHHH-HHhcCCCeEEEE-c--ccH-H----------------------h----HHHHHHHH
Confidence 56677776 55677 77887665 555566555544 1 110 0 1 22344445
Q ss_pred HHHhhcCCCcEEEEEEEc---CChHHHHHHHhhhcCCCEEEEcCcCCCc----cc----------hhhccCChHHHHHhh
Q 025234 129 IRLCNDAKVTVETMLVES---KATAKAILDLISVANVTSLVMGTKLSPR----SR----------LFTKKLSKGEFVKKN 191 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g---~~v~eaIl~~a~e~~aDLIVmGs~~~~~----~~----------~~~l~GSva~~Vl~~ 191 (256)
.+.+. ++++...++.- ..-.++|++..++..+|. |+|+|..-. ++ ..| |-.-..=++.
T Consensus 664 keRF~--~fPV~I~~LSRF~s~kE~~~il~~la~G~vDI-vIGTHrLL~kdv~FkdLGLlIIDEEqRF--GVk~KEkLK~ 738 (1139)
T COG1197 664 KERFA--GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDI-VIGTHRLLSKDVKFKDLGLLIIDEEQRF--GVKHKEKLKE 738 (1139)
T ss_pred HHHhc--CCCeeEEEecccCCHHHHHHHHHHHhcCCccE-EEechHhhCCCcEEecCCeEEEechhhc--CccHHHHHHH
Confidence 55544 44444444431 223577888888888885 679997411 11 123 5444444554
Q ss_pred CCCcceEEEEeCCcccccchhhhhhhhccCCCCCCC-CCCCCCCeeeccccCCc
Q 025234 192 APDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPS-SPGTGRPQVKGKSRRNL 244 (256)
Q Consensus 192 a~~~cPVLVV~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~ 244 (256)
...++.||....-.+..+=.+++... -+-+-.. +|.++.||.+-|+..|.
T Consensus 739 Lr~~VDvLTLSATPIPRTL~Msm~Gi---RdlSvI~TPP~~R~pV~T~V~~~d~ 789 (1139)
T COG1197 739 LRANVDVLTLSATPIPRTLNMSLSGI---RDLSVIATPPEDRLPVKTFVSEYDD 789 (1139)
T ss_pred HhccCcEEEeeCCCCcchHHHHHhcc---hhhhhccCCCCCCcceEEEEecCCh
Confidence 44448888876554444444444443 1112233 56788899998877664
No 43
>PRK13820 argininosuccinate synthase; Provisional
Probab=66.31 E-value=1e+02 Score=29.35 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=20.4
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
.+.+.++|++.+++.|.-|+.++
T Consensus 98 ~~~l~e~A~e~G~~~IA~G~t~~ 120 (394)
T PRK13820 98 AEKIVEVAEKEGASAIAHGCTGK 120 (394)
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 56789999999999999999665
No 44
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=66.22 E-value=62 Score=30.65 Aligned_cols=93 Identities=11% Similarity=0.093 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
-.||..|+. .+.+|..|.|+++........+..+ ...+ ....-..+-|.++.+.+...|++. .+
T Consensus 16 N~aL~~A~~----~~~~vl~vfi~dp~~~~~~~~~~~~--~~~~--------~r~~Fl~esL~~L~~~L~~~g~~L--~v 79 (429)
T TIGR02765 16 NPALYKASS----SSDTLIPLYCFDPRQFKLTHFFGFP--KTGP--------ARGKFLLESLKDLRTSLRKLGSDL--LV 79 (429)
T ss_pred HHHHHHHHh----cCCeEEEEEEECchHhccccccccC--CCCH--------HHHHHHHHHHHHHHHHHHHcCCCe--EE
Confidence 446666654 3457999999997532100000000 0011 112223344555555555567665 44
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
..|. +.+.|.+++++.+++.|+.-..-..
T Consensus 80 ~~G~-~~~vl~~L~~~~~~~~V~~~~~~~~ 108 (429)
T TIGR02765 80 RSGK-PEDVLPELIKELGVRTVFLHQEVGS 108 (429)
T ss_pred EeCC-HHHHHHHHHHHhCCCEEEEeccCCH
Confidence 5665 4899999999999999998766543
No 45
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=65.94 E-value=33 Score=25.94 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEE-----------cCChHHHHHHHhhhcCCCEEEEcCc
Q 025234 122 RNLLQKYIRLCNDAKVTVETMLVE-----------SKATAKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 122 ~~~L~~~~~~~~~~gv~v~~~lv~-----------g~~v~eaIl~~a~e~~aDLIVmGs~ 170 (256)
+..|+++..++...|+.+...++. |..-.++|.+.++..++|+||.-..
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~ 66 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQKRRKPDPKTYIGSGKVEEIKELIEELDADLVVFDNE 66 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEecCCCCCcceeechhHHHHHHHHHhhcCCCEEEECCC
Confidence 456677777777777766544433 2223789999999999999999863
No 46
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=64.02 E-value=6.6 Score=30.05 Aligned_cols=24 Identities=13% Similarity=0.307 Sum_probs=20.6
Q ss_pred CChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 147 KATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 147 ~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
.+ .++|+++|+++++||+|+|.-.
T Consensus 49 ~d-~~~l~~~a~~~~idlvvvGPE~ 72 (100)
T PF02844_consen 49 TD-PEELADFAKENKIDLVVVGPEA 72 (100)
T ss_dssp T--HHHHHHHHHHTTESEEEESSHH
T ss_pred CC-HHHHHHHHHHcCCCEEEECChH
Confidence 45 6999999999999999999843
No 47
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=61.77 E-value=62 Score=31.07 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=26.7
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhc--CCCCEEEEEEEecC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAV--SPGARIYLVHVFSP 89 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~--~~~a~l~LLHV~~~ 89 (256)
..+|+||+.|.. --+|-+.+.... ..+-+++++||--.
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhg 55 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHG 55 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCC
Confidence 488999999998 445555544332 34679999999643
No 48
>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]
Probab=60.62 E-value=1.3e+02 Score=27.11 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=54.5
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIR 130 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~ 130 (256)
..+++||..|.- ..+|..++..+ .|.++.++.|..|.. + . . .++.+..
T Consensus 17 ~~kv~vAfSGGvDSslLa~la~~~--lG~~v~AvTv~sP~~--p-------~-----~---------------e~e~A~~ 65 (269)
T COG1606 17 KKKVVVAFSGGVDSSLLAKLAKEA--LGDNVVAVTVDSPYI--P-------R-----R---------------EIEEAKN 65 (269)
T ss_pred cCeEEEEecCCccHHHHHHHHHHH--hccceEEEEEecCCC--C-------h-----h---------------hhhHHHH
Confidence 458999998877 66666665555 478899998887542 1 0 0 1111111
Q ss_pred HhhcCCCcEEEEEEE-----------------cCChHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 131 LCNDAKVTVETMLVE-----------------SKATAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 131 ~~~~~gv~v~~~lv~-----------------g~~v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
.+...|++.+..-.. -..+.+.|++.|.+.+.|.|+=|+....
T Consensus 66 ~A~~iGi~H~~i~~~~~~~~~~~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasD 125 (269)
T COG1606 66 IAKEIGIRHEFIKMNRMDPEFKENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASD 125 (269)
T ss_pred HHHHhCCcceeeehhhcchhhccCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHH
Confidence 112223322211100 1235788999999999999999998643
No 49
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=60.47 E-value=1.1e+02 Score=27.90 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=26.1
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCC-CCEEEEEEEecCC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSP-GARIYLVHVFSPV 90 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~-~a~l~LLHV~~~~ 90 (256)
+.+|+|+..|.. -.+|-+.+..+... +-.+.+|||-...
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~ 67 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW 67 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCC
Confidence 678999999888 44444444444433 4578899987643
No 50
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=59.44 E-value=54 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=28.8
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
++..|+++.. +....+.+.+++.+.+.++|+|++......
T Consensus 23 l~~~G~~V~~--lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~ 62 (119)
T cd02067 23 LRDAGFEVID--LGVDVPPEEIVEAAKEEDADAIGLSGLLTT 62 (119)
T ss_pred HHHCCCEEEE--CCCCCCHHHHHHHHHHcCCCEEEEeccccc
Confidence 3446877632 223445789999999999999999887433
No 51
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=58.84 E-value=17 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.046 Sum_probs=35.9
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcC-----CCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 149 TAKAILDLISVANVTSLVMGTKL-----SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~-----~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
..+.|.+++++++++.||+|--- .+...... -..++.+.+... +||..+-+..
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v--~~f~~~L~~~~~--~~v~~~DEr~ 99 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERA--RKFANRLEGRFG--LPVVLVDERL 99 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHH--HHHHHHHHHHhC--CCEEEEcCCc
Confidence 37889999999999999999332 12111111 244566666667 9999997644
No 52
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=57.90 E-value=52 Score=31.79 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh----cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceE
Q 025234 123 NLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISV----ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 198 (256)
Q Consensus 123 ~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e----~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPV 198 (256)
+++..+.+.+....+-+-...+.|...+..|++.++. ..+|.||+|+.|.+.-..|.+.--..-+-+-.++ .||
T Consensus 151 DIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~FNdE~vaRAi~~s~--iPv 228 (440)
T COG1570 151 DILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAFNDEIVARAIAASR--IPV 228 (440)
T ss_pred HHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhccChHHHHHHHHhCC--CCe
Confidence 3444444443333344555667787777888766644 3389999999887643322111112223344667 788
Q ss_pred EEEe
Q 025234 199 TIVH 202 (256)
Q Consensus 199 LVV~ 202 (256)
+-.=
T Consensus 229 ISAV 232 (440)
T COG1570 229 ISAV 232 (440)
T ss_pred Eeec
Confidence 7543
No 53
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=57.38 E-value=75 Score=23.84 Aligned_cols=62 Identities=6% Similarity=0.123 Sum_probs=36.4
Q ss_pred cCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 134 DAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 134 ~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
..|.++. ++......+.+.+.+.+.++|+|.+...-....... -..++. +++..+++++++-
T Consensus 26 ~~G~~v~--~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~---~~l~~~-~k~~~p~~~iv~G 87 (121)
T PF02310_consen 26 KAGHEVD--ILDANVPPEELVEALRAERPDVVGISVSMTPNLPEA---KRLARA-IKERNPNIPIVVG 87 (121)
T ss_dssp HTTBEEE--EEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHH---HHHHHH-HHTTCTTSEEEEE
T ss_pred HCCCeEE--EECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHH---HHHHHH-HHhcCCCCEEEEE
Confidence 3576554 445444469999999999999999987433322221 244444 4443324555554
No 54
>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.
Probab=56.45 E-value=95 Score=25.86 Aligned_cols=24 Identities=13% Similarity=0.199 Sum_probs=19.2
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
...+.++|++.+++.|+.|.+...
T Consensus 84 ~~~l~~~a~~~g~~~I~~G~~~dD 107 (202)
T cd01990 84 YEALKEIAEELGLDVVLDGTNADD 107 (202)
T ss_pred HHHHHHHHHHCCCCEEEEcCcccc
Confidence 456678899999999999988653
No 55
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=56.12 E-value=1e+02 Score=25.27 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=41.7
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhc---CCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLISVA---NVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~---~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|+.++..+.....-.+.+.+++++. +++.+|.++.....+ +.-|.-++. .||+-||
T Consensus 17 ~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~L---------pgvva~~t~--~PVIgvP 85 (150)
T PF00731_consen 17 EEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAAL---------PGVVASLTT--LPVIGVP 85 (150)
T ss_dssp HHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--H---------HHHHHHHSS--S-EEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccc---------hhhheeccC--CCEEEee
Confidence 34444445568999888877655567787777664 568777666443322 234555778 9999999
Q ss_pred CCcccc
Q 025234 203 DGKKVV 208 (256)
Q Consensus 203 ~~~~~~ 208 (256)
......
T Consensus 86 ~~~~~~ 91 (150)
T PF00731_consen 86 VSSGYL 91 (150)
T ss_dssp E-STTT
T ss_pred cCcccc
Confidence 754433
No 56
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=55.52 E-value=1.2e+02 Score=26.85 Aligned_cols=119 Identities=16% Similarity=0.119 Sum_probs=61.3
Q ss_pred EEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 56 YVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 56 LVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
=||..+-. ...++.++.+|+..+-.|-.==-++... ..|+-.. .++++ ++.......+..+..++.
T Consensus 31 NIACG~HAGDp~~M~~tv~lA~~~gV~iGAHPsyPD~~----gFGRr~m-~~s~~-------el~~~v~yQigaL~~~a~ 98 (242)
T PF03746_consen 31 NIACGFHAGDPETMRRTVRLAKEHGVAIGAHPSYPDRE----GFGRRSM-DISPE-------ELRDSVLYQIGALQAIAA 98 (242)
T ss_dssp EEE-SSSS--HHHHHHHHHHHHHTT-EEEEE---S-TT----TTT-S------HH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccCHHHHHHHHHHHHHcCCEeccCCCCCCCC----CCCCCCC-CCCHH-------HHHHHHHHHHHHHHHHHH
Confidence 34555544 6677777778887776555433333321 2232111 12232 233333444555666677
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
..|.++..+--.| ..++++|++.+.+.+.+|.++|-. ||......+... .+++
T Consensus 99 ~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~a-----------gs~~~~~A~~~G--l~~~ 160 (242)
T PF03746_consen 99 AEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLA-----------GSELEKAAKELG--LPVV 160 (242)
T ss_dssp HTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEET-----------TSHHHHHHHHCT----EE
T ss_pred HcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcC-----------CcHHHHHHHHCC--CcEE
Confidence 7888877665554 334789999999999999999864 455566777776 6665
No 57
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=50.37 E-value=81 Score=32.74 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=30.1
Q ss_pred CeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCC
Q 025234 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVT 91 (256)
Q Consensus 53 ~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~ 91 (256)
.+|.+--=+.+ ++|+.++.+++..++..+++++-++...
T Consensus 615 ~~v~~lF~GG~DDrEALa~~~rm~~~~~v~lTVirf~~~~~ 655 (769)
T KOG1650|consen 615 YKVVVLFLGGKDDREALALAKRMAENPRVTLTVIRFFPDES 655 (769)
T ss_pred eEEEEEecCChhhHHHHHHHHHHhhCCceEEEEEEeeccch
Confidence 34444443444 9999999999999999999999988653
No 58
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=49.22 E-value=33 Score=27.25 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=36.0
Q ss_pred ChHHHHHHHhhhcCCCEEEEcCc-----CCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 148 ATAKAILDLISVANVTSLVMGTK-----LSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 148 ~v~eaIl~~a~e~~aDLIVmGs~-----~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
...+.|.+++++++++.||+|-- ..+...... -..++.+.+... +||..+-+.
T Consensus 35 ~~~~~l~~~i~~~~~~~iVvGlP~~~dG~~~~~a~~v--~~f~~~L~~~~~--~~v~~~DEr 92 (130)
T TIGR00250 35 PDWSRIEELLKEWTPDKIVVGLPLNMDGTEGPLTERA--QKFANRLEGRFG--VPVVLWDER 92 (130)
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCCCcCcCHHHHHH--HHHHHHHHHHhC--CCEEEEcCC
Confidence 34788999999999999999932 222211111 244566766667 999999764
No 59
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=48.17 E-value=1.7e+02 Score=24.71 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=51.3
Q ss_pred EEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025234 55 VYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLC 132 (256)
Q Consensus 55 ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~ 132 (256)
++|+..|+- ..+.+.|..+... +.+|.|+..-... . .+.+.|+.|.+..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R------~----------------------ga~eQL~~~a~~l 55 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYR------I----------------------GAVEQLKTYAEIL 55 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSS------T----------------------HHHHHHHHHHHHH
T ss_pred EEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCC------c----------------------cHHHHHHHHHHHh
Confidence 456666666 8888888877776 8888888753221 0 1223555555554
Q ss_pred hcCCCcEEEEEEEcCChHHH---HHHHhhhcCCCEEEEcCcCCCccc
Q 025234 133 NDAKVTVETMLVESKATAKA---ILDLISVANVTSLVMGTKLSPRSR 176 (256)
Q Consensus 133 ~~~gv~v~~~lv~g~~v~ea---Il~~a~e~~aDLIVmGs~~~~~~~ 176 (256)
++++...-. ..++.+. .++..+..++|+|++=+-|++...
T Consensus 56 ---~vp~~~~~~-~~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d 98 (196)
T PF00448_consen 56 ---GVPFYVART-ESDPAEIAREALEKFRKKGYDLVLIDTAGRSPRD 98 (196)
T ss_dssp ---TEEEEESST-TSCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTH
T ss_pred ---ccccchhhc-chhhHHHHHHHHHHHhhcCCCEEEEecCCcchhh
Confidence 555433111 1233343 344555678999999999987644
No 60
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=48.02 E-value=1.5e+02 Score=26.90 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=58.2
Q ss_pred hhhhhhcccccCCccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCH
Q 025234 30 PEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQ 107 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~ 107 (256)
.++.++++.++=.+ .........||.|=+.++. ..||-++...- ..++++.+| +....
T Consensus 72 ~~l~~l~~~l~l~~-~i~~~~~~~kiavl~Sg~g~nl~al~~~~~~~-~l~~~i~~v--isn~~---------------- 131 (289)
T PRK13010 72 QEFQPVAEKFDMQW-AIHPDGQRPKVVIMVSKFDHCLNDLLYRWRMG-ELDMDIVGI--ISNHP---------------- 131 (289)
T ss_pred HHHHHHHHHhCCeE-EEecCCCCeEEEEEEeCCCccHHHHHHHHHCC-CCCcEEEEE--EECCh----------------
Confidence 34555555555333 2222334568888888887 77877776432 234555443 33220
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE--c-CChHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 108 EQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVE--S-KATAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 108 e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~--g-~~v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
. . .+.+...|+++...-.. . ......+++..+++++|+||+..-.+
T Consensus 132 ------------~---~----~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagym~ 180 (289)
T PRK13010 132 ------------D---L----QPLAVQHDIPFHHLPVTPDTKAQQEAQILDLIETSGAELVVLARYMQ 180 (289)
T ss_pred ------------h---H----HHHHHHcCCCEEEeCCCcccccchHHHHHHHHHHhCCCEEEEehhhh
Confidence 0 0 02233457876542111 1 12245788999999999999987554
No 61
>PRK11914 diacylglycerol kinase; Reviewed
Probab=47.92 E-value=92 Score=27.93 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=36.8
Q ss_pred HhhcCCCcEEEEEEEc-CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 131 LCNDAKVTVETMLVES-KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 131 ~~~~~gv~v~~~lv~g-~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
.+...++++.....+. +. ..++.+.+.+.++|+||+..-. +.+. .+...+. ... +|+-++|.|.
T Consensus 34 ~l~~~g~~~~~~~t~~~~~-~~~~a~~~~~~~~d~vvv~GGD-GTi~------evv~~l~-~~~--~~lgiiP~GT 98 (306)
T PRK11914 34 RLHHRGVDVVEIVGTDAHD-ARHLVAAALAKGTDALVVVGGD-GVIS------NALQVLA-GTD--IPLGIIPAGT 98 (306)
T ss_pred HHHHcCCeEEEEEeCCHHH-HHHHHHHHHhcCCCEEEEECCc-hHHH------HHhHHhc-cCC--CcEEEEeCCC
Confidence 3344577665544433 23 5667766667788987765433 3222 2223333 346 8999999764
No 62
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=47.74 E-value=69 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=16.5
Q ss_pred HHHHHHHhhhcCCCEEEEcCcC
Q 025234 150 AKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
.+.|+++|++.++||+|+|.-.
T Consensus 52 ~~~lv~fA~~~~idl~vVGPE~ 73 (428)
T COG0151 52 HEALVAFAKEKNVDLVVVGPEA 73 (428)
T ss_pred HHHHHHHHHHcCCCEEEECCcH
Confidence 5778888888888888887653
No 63
>PLN00200 argininosuccinate synthase; Provisional
Probab=47.71 E-value=2.6e+02 Score=26.74 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 149 TAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
++..|++.|++.+++.|+=|+.+++
T Consensus 101 i~~~lv~~A~~~G~~~VahG~tgkG 125 (404)
T PLN00200 101 IAKAMVDIAKEVGADAVAHGATGKG 125 (404)
T ss_pred HHHHHHHHHHHcCCCEEEeCCcCCC
Confidence 3788999999999999999998854
No 64
>PRK10674 deoxyribodipyrimidine photolyase; Provisional
Probab=47.65 E-value=1.9e+02 Score=27.92 Aligned_cols=87 Identities=13% Similarity=0.138 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+..+ +..|..|.|+++........| .....-..+-|.++.+.+...|++. .+
T Consensus 17 N~aL~~A~~~~---~~~vlpvyv~dp~~~~~~~~~----------------~~r~~Fl~esL~~L~~~L~~~g~~L--~v 75 (472)
T PRK10674 17 NLALAAACRDP---SARVLALFIATPAQWAAHDMA----------------PRQAAFINAQLNALQIALAEKGIPL--LF 75 (472)
T ss_pred HHHHHHHHhCC---CCCEEEEEEECchhhccCCCC----------------HHHHHHHHHHHHHHHHHHHHcCCce--EE
Confidence 44666665432 246999999997532111111 0111223334445555555557655 44
Q ss_pred EEc---CChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 144 VES---KATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 144 v~g---~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
..| +.+.+.|.+++++.+++.|+.-..-
T Consensus 76 ~~g~~~g~~~~vl~~l~~~~~i~~v~~~~~~ 106 (472)
T PRK10674 76 HEVDDFAASVEWLKQFCQQHQVTHLFYNYQY 106 (472)
T ss_pred EecCCcCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 544 2568889999999999999986543
No 65
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=46.41 E-value=1.6e+02 Score=23.96 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=18.3
Q ss_pred HHHHHHhhhcCCCEEEEcCcCCC
Q 025234 151 KAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
..+.++|++.+++.|+.|.+...
T Consensus 93 ~~~~~~A~~~g~~~I~~G~~~~D 115 (177)
T cd01712 93 RIAEKLAEELGADAIVTGESLGQ 115 (177)
T ss_pred HHHHHHHHHcCCCEEEEccCccc
Confidence 34667889999999999998643
No 66
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=46.39 E-value=2.5e+02 Score=26.22 Aligned_cols=94 Identities=11% Similarity=0.052 Sum_probs=58.0
Q ss_pred CCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 51 ~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
.+=-.+|+|.|+- ..-+--.+...+..|-+|.|.-.-. | +..+-+.|+.|.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DT------------------------F----RAaAiEQL~~w~ 190 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDT------------------------F----RAAAIEQLEVWG 190 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecch------------------------H----HHHHHHHHHHHH
Confidence 3444678899988 4444444456666787776653211 1 222334455555
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHH---HHhhhcCCCEEEEcCcCCCccc
Q 025234 130 RLCNDAKVTVETMLVESKATAKAIL---DLISVANVTSLVMGTKLSPRSR 176 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v~eaIl---~~a~e~~aDLIVmGs~~~~~~~ 176 (256)
+. .|+++-..- +|.+|+..+- +.|+..++|.|++-+-||-..+
T Consensus 191 er---~gv~vI~~~-~G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 191 ER---LGVPVISGK-EGADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HH---hCCeEEccC-CCCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCc
Confidence 44 477765543 6777665553 5677799999999999985433
No 67
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=45.32 E-value=2e+02 Score=24.79 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=47.1
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+|.|=+.++- ..|+--|+. ....++++.+|-.-.+..+ .| +.
T Consensus 2 ki~VlaSG~GSNlqaiida~~-~~~~~a~i~~Visd~~~A~-------------------------------~l----er 45 (200)
T COG0299 2 KIAVLASGNGSNLQAIIDAIK-GGKLDAEIVAVISDKADAY-------------------------------AL----ER 45 (200)
T ss_pred eEEEEEeCCcccHHHHHHHHh-cCCCCcEEEEEEeCCCCCH-------------------------------HH----HH
Confidence 5666666666 777776765 2223566666544433211 11 12
Q ss_pred hhcCCCcEEEEEEEcCC----hHHHHHHHhhhcCCCEEEEcCc
Q 025234 132 CNDAKVTVETMLVESKA----TAKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~----v~eaIl~~a~e~~aDLIVmGs~ 170 (256)
++..|++....-....+ ...+|++..++.++|+||+..-
T Consensus 46 A~~~gIpt~~~~~k~~~~r~~~d~~l~~~l~~~~~dlvvLAGy 88 (200)
T COG0299 46 AAKAGIPTVVLDRKEFPSREAFDRALVEALDEYGPDLVVLAGY 88 (200)
T ss_pred HHHcCCCEEEeccccCCCHHHHHHHHHHHHHhcCCCEEEEcch
Confidence 23357765443332221 3578999999999999998764
No 68
>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=45.17 E-value=2.7e+02 Score=26.13 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=18.9
Q ss_pred HHHHHHhhhcCCCEEEEcCcCC
Q 025234 151 KAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
..+.++|++.++|.|+.|.+.+
T Consensus 103 ~~l~~~A~~~G~~~IATGHya~ 124 (360)
T PRK14665 103 PLLAKIADEMGIFYLATGHYVR 124 (360)
T ss_pred HHHHHHHHHcCCCEEEECCccc
Confidence 5677999999999999998864
No 69
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=45.07 E-value=96 Score=28.16 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEEcC-ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 122 RNLLQKYIRLCNDAKVTVETMLVESK-ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 122 ~~~L~~~~~~~~~~gv~v~~~lv~g~-~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
++.+.+....+...+........+.. . +..+++.+...+.|.||.+.-... . +.++.-+...-. -|+-+
T Consensus 19 ~~~~~~~~~~l~~~g~~~~~~~t~~~g~-a~~~a~~a~~~~~D~via~GGDGT-----v--~evingl~~~~~--~~Lgi 88 (301)
T COG1597 19 KKLLREVEELLEEAGHELSVRVTEEAGD-AIEIAREAAVEGYDTVIAAGGDGT-----V--NEVANGLAGTDD--PPLGI 88 (301)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEeecCcc-HHHHHHHHHhcCCCEEEEecCcch-----H--HHHHHHHhcCCC--CceEE
Confidence 34555555555667888888877765 5 788888888889999998874422 1 355555555444 23888
Q ss_pred EeCCc
Q 025234 201 VHDGK 205 (256)
Q Consensus 201 V~~~~ 205 (256)
||.|.
T Consensus 89 lP~GT 93 (301)
T COG1597 89 LPGGT 93 (301)
T ss_pred ecCCc
Confidence 88764
No 70
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=44.78 E-value=66 Score=29.15 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCC-Cc----c--------chhhccCChHHHHHh
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS-PR----S--------RLFTKKLSKGEFVKK 190 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~-~~----~--------~~~~l~GSva~~Vl~ 190 (256)
.|+..++..+..++++....+.-..-.+.|.++.++.++|.||+-.|.. .. + .+.|+ -+-+.++
T Consensus 116 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFV---eaVk~aR 192 (283)
T TIGR02855 116 YLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFV---ETVREAR 192 (283)
T ss_pred HHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHH---HHHHHHH
Confidence 4444455555568888777665444579999999999999999988862 11 0 11221 1223444
Q ss_pred hCCCcceEEEEeCCcccccchhhhh
Q 025234 191 NAPDYCEVTIVHDGKKVVDGQKVAE 215 (256)
Q Consensus 191 ~a~~~cPVLVV~~~~~~~~~~~~~~ 215 (256)
+-.++-+=|||-.|...+.=++.+.
T Consensus 193 ~y~~~~D~LVIFAGACQS~yEall~ 217 (283)
T TIGR02855 193 KYVPSLDQLVIFAGACQSHFESLIR 217 (283)
T ss_pred hcCCCcccEEEEcchhHHHHHHHHH
Confidence 4444566788888877777666543
No 71
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=44.64 E-value=1.5e+02 Score=28.94 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=25.6
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEE
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLH 85 (256)
..++|+++|.+|- ..++++.-.+ ...|.+|.++-
T Consensus 69 ~~k~IllgVtGsIAayka~~lvr~L-~k~G~~V~Vvm 104 (475)
T PRK13982 69 ASKRVTLIIGGGIAAYKALDLIRRL-KERGAHVRCVL 104 (475)
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHH-HhCcCEEEEEE
Confidence 3689999999999 8888877655 44687766554
No 72
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=44.00 E-value=1.2e+02 Score=27.92 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=37.6
Q ss_pred HHHhhcCCCcEEEEEEEcCCh---HHHHHHHhhhcCCCEEE-EcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 129 IRLCNDAKVTVETMLVESKAT---AKAILDLISVANVTSLV-MGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v---~eaIl~~a~e~~aDLIV-mGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+.+...++.+...+..+.+. .+.+.+.+++.++|.|| +|.-. . ..++..+..... +|++.||.
T Consensus 42 ~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs--~-------~D~aK~ia~~~~--~p~i~VPT 109 (349)
T cd08550 42 EAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGK--T-------LDTAKAVADRLD--KPIVIVPT 109 (349)
T ss_pred HHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcH--H-------HHHHHHHHHHcC--CCEEEeCC
Confidence 333334466554444444422 45577778888999877 55311 1 244444545557 89999997
No 73
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=43.74 E-value=50 Score=25.25 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=32.4
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 149 TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
+.....+.|.+.++..||+=+.. |.++..+.+.=| .|||+++-...
T Consensus 4 ia~aa~~~A~~~~ak~Ivv~T~s----------G~ta~~isk~RP-~~pIiavt~~~ 49 (117)
T PF02887_consen 4 IARAAVELAEDLNAKAIVVFTES----------GRTARLISKYRP-KVPIIAVTPNE 49 (117)
T ss_dssp HHHHHHHHHHHHTESEEEEE-SS----------SHHHHHHHHT-T-SSEEEEEESSH
T ss_pred HHHHHHHHHHhcCCCEEEEECCC----------chHHHHHHhhCC-CCeEEEEcCcH
Confidence 46677888999999999987743 566666665433 59999987643
No 74
>TIGR02766 crypt_chrom_pln cryptochrome, plant family. At least five major families of cryptochomes and photolyases share FAD cofactor binding, sequence homology, and the ability to react to short wavelengths of visible light. Photolysases are responsible for light-dependent DNA repair by removal of two types of uv-induced DNA dimerizations. Cryptochromes have other functions, often regulatory and often largely unknown, which may include circadian clock entrainment and control of development. Members of this subfamily are known so far only in plants; they may show some photolyase activity in vitro but appear mostly to be regulatory proteins that respond to blue light.
Probab=43.69 E-value=1.8e+02 Score=28.06 Aligned_cols=85 Identities=19% Similarity=0.141 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
-.||..|+. .+ .|..|.|+++........+ . ....-..+-|..+.+.+...|.+...
T Consensus 13 N~aL~~A~~----~~-~vlpvyi~dp~~~~~~~~~--------~--------~~~~fl~~sL~~L~~~L~~~G~~L~v-- 69 (475)
T TIGR02766 13 NPALAAAAR----AG-PVIPVFVWAPEEEGQYYPG--------R--------VSRWWLKQSLAHLDQSLRSLGTCLVT-- 69 (475)
T ss_pred HHHHHHHHh----CC-CEEEEEEechHHhcccccc--------H--------HHHHHHHHHHHHHHHHHHHcCCceEE--
Confidence 346655542 23 6999999987532110001 0 00112333455555555556765433
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
+.++.+.+.|.+++++.+++.|..-...
T Consensus 70 ~~~g~~~~~l~~l~~~~~i~~v~~~~~~ 97 (475)
T TIGR02766 70 IRSTDTVAALLDCVRSTGATRLFFNHLY 97 (475)
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEeccc
Confidence 3344568999999999999999877664
No 75
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=43.65 E-value=63 Score=29.38 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=58.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCC-Cccc------------hhhccCChHHHHHh
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS-PRSR------------LFTKKLSKGEFVKK 190 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~-~~~~------------~~~l~GSva~~Vl~ 190 (256)
.|+..++..+..++++....+.-..-.+.|.++.++.++|.||+-.|.. ...+ +.|+ -+-+.++
T Consensus 117 YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFV---eaV~~aR 193 (287)
T PF05582_consen 117 YLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFV---EAVKEAR 193 (287)
T ss_pred HHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHH---HHHHHHH
Confidence 4555555556678888877665445579999999999999999988763 1111 1221 1223455
Q ss_pred hCCCcceEEEEeCCcccccchhhhhh
Q 025234 191 NAPDYCEVTIVHDGKKVVDGQKVAEA 216 (256)
Q Consensus 191 ~a~~~cPVLVV~~~~~~~~~~~~~~~ 216 (256)
+-.++-+=|||=.|..-+.=++-+.+
T Consensus 194 ~~ep~~D~LVIfAGACQS~fEall~A 219 (287)
T PF05582_consen 194 KYEPNLDDLVIFAGACQSHFEALLEA 219 (287)
T ss_pred hcCCCcccEEEEcchhHHHHHHHHHc
Confidence 55545677888888877777665443
No 76
>PRK00919 GMP synthase subunit B; Validated
Probab=42.53 E-value=1.9e+02 Score=26.47 Aligned_cols=37 Identities=19% Similarity=0.116 Sum_probs=24.9
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
.++++|++.|.- -.++-+.+..+ .|.+++.+|+-...
T Consensus 21 ~~kVlVa~SGGVDSsvla~la~~~--lG~~v~aV~vD~G~ 58 (307)
T PRK00919 21 DGKAIIALSGGVDSSVAAVLAHRA--IGDRLTPVFVDTGL 58 (307)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHH--hCCeEEEEEEECCC
Confidence 378999998877 33333333332 47889999998653
No 77
>PRK12569 hypothetical protein; Provisional
Probab=42.24 E-value=1.3e+02 Score=26.78 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=58.8
Q ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 54 DVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 54 ~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
+|-++--..+...++.++++|+..+-.|-.==-++.. ...|+-.. .++++++. ......+..+..+|.
T Consensus 36 NIACG~HAGDp~~M~~tv~lA~~~~V~IGAHPsyPD~----~gFGRr~m-~~s~~el~-------~~v~yQigaL~~~~~ 103 (245)
T PRK12569 36 NIATGFHAGDPNIMRRTVELAKAHGVGIGAHPGFRDL----VGFGRRHI-NASPQELV-------NDVLYQLGALREFAR 103 (245)
T ss_pred HHhccccCCCHHHHHHHHHHHHHcCCEeccCCCCCcC----CCCCCCCC-CCCHHHHH-------HHHHHHHHHHHHHHH
Confidence 3444433333666777777777766655432122221 12332211 23343332 233334455556666
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
..|.++..+--.| ..++++|++.+++.+.+|++++..+
T Consensus 104 ~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~ 150 (245)
T PRK12569 104 AHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDG 150 (245)
T ss_pred HcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 6787776654333 3457899999999999999988533
No 78
>PRK05406 LamB/YcsF family protein; Provisional
Probab=42.06 E-value=1.4e+02 Score=26.69 Aligned_cols=121 Identities=14% Similarity=0.113 Sum_probs=68.8
Q ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 54 DVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 54 ~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
+|-++--..+...++..+.+|+..+-.|-.==-++.. ...|+-.. .++++++ .......+..+..+|+
T Consensus 33 NIACG~HAGDp~~M~~tv~lA~~~gV~IGAHPgypD~----~gFGRR~m-~~s~~el-------~~~v~yQigAL~~~a~ 100 (246)
T PRK05406 33 NIACGFHAGDPAVMRRTVRLAKENGVAIGAHPGYPDL----EGFGRRNM-DLSPEEL-------YALVLYQIGALQAIAR 100 (246)
T ss_pred HHhccccCCCHHHHHHHHHHHHHcCCeEccCCCCCcc----CCCCCCCC-CCCHHHH-------HHHHHHHHHHHHHHHH
Confidence 4444444444667777777777777655432122221 12332111 2334333 2333334555566677
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
..|.++..+--.| ..++.+|++.++..+.+|+++|.. ||....+.+... .+++
T Consensus 101 ~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~-----------~s~~~~~A~~~G--l~~~ 162 (246)
T PRK05406 101 AAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLA-----------GSELIRAAEEAG--LRTA 162 (246)
T ss_pred HcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecC-----------ChHHHHHHHHcC--CcEE
Confidence 7788776654443 345789999999999999999853 344455666666 6665
No 79
>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases. The domain forms a apha/beta/apha fold which binds to Adenosine group..
Probab=41.94 E-value=1.4e+02 Score=21.97 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=20.1
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCCCcc
Q 025234 149 TAKAILDLISVANVTSLVMGTKLSPRS 175 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~~~~ 175 (256)
..+.+.+.+.+.+++.|+.|.+.....
T Consensus 49 r~~~~~~~a~~~g~~~i~~g~~~~D~~ 75 (103)
T cd01986 49 REEAAKRIAKEKGAETIATGTRRDDVA 75 (103)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcchHH
Confidence 356677788888888899888876443
No 80
>PRK06801 hypothetical protein; Provisional
Probab=41.59 E-value=67 Score=29.14 Aligned_cols=54 Identities=6% Similarity=-0.002 Sum_probs=39.1
Q ss_pred cCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 146 SKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 146 g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
......+|++.|++.+.-+|+..+.+.......-........+.++++ +||.+=
T Consensus 27 n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~--vpV~lH 80 (286)
T PRK06801 27 DSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD--IPVVLN 80 (286)
T ss_pred CHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC--CCEEEE
Confidence 334489999999999999999988875322111112577788899999 998654
No 81
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=41.53 E-value=61 Score=29.38 Aligned_cols=55 Identities=7% Similarity=0.019 Sum_probs=38.0
Q ss_pred EcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 145 ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 145 ~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
.......++++.|++.+...|+..+.+.-.....-........+.++++ +||.+=
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~--VPValH 80 (284)
T PRK12857 26 NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS--VPVALH 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC--CCEEEE
Confidence 3444589999999999999999988764211110001456677888999 998764
No 82
>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional
Probab=41.22 E-value=3.1e+02 Score=25.76 Aligned_cols=22 Identities=5% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHhhhcCCCEEEEcCcCC
Q 025234 151 KAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
..+.++|.+.++|.|+-|.+.+
T Consensus 98 ~~L~~~A~~~G~~~IATGHyar 119 (362)
T PRK14664 98 RMLIEWADKLGCAWIATGHYSR 119 (362)
T ss_pred HHHHHHHHHcCCCEEEECCccc
Confidence 5688999999999999999974
No 83
>PRK13054 lipid kinase; Reviewed
Probab=40.33 E-value=1.5e+02 Score=26.58 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=37.9
Q ss_pred hhcCCCcEEEEEEEc-CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhh---CCCcceEEEEeCCc
Q 025234 132 CNDAKVTVETMLVES-KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKN---APDYCEVTIVHDGK 205 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g-~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~---a~~~cPVLVV~~~~ 205 (256)
+...+++++....+. +. +.++.+.+...+.|.||+.... +.+ ..+...++.. .. +|+-++|.|.
T Consensus 27 l~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vvv~GGD-GTl------~evv~~l~~~~~~~~--~~lgiiP~GT 94 (300)
T PRK13054 27 LREEGHTLHVRVTWEKGD-AARYVEEALALGVATVIAGGGD-GTI------NEVATALAQLEGDAR--PALGILPLGT 94 (300)
T ss_pred HHHcCCEEEEEEecCCCc-HHHHHHHHHHcCCCEEEEECCc-cHH------HHHHHHHHhhccCCC--CcEEEEeCCc
Confidence 344677766544443 34 5677776666778887765533 322 2334455533 24 8999999764
No 84
>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit. This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit
Probab=40.24 E-value=2.7e+02 Score=25.46 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=24.3
Q ss_pred CeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 53 ~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
++|+|++.|.- -.++-+.+..+ .|.+++.+||-...
T Consensus 17 ~kVvValSGGVDSsvla~ll~~~--~G~~v~av~vd~G~ 53 (311)
T TIGR00884 17 AKVIIALSGGVDSSVAAVLAHRA--IGDRLTCVFVDHGL 53 (311)
T ss_pred CcEEEEecCChHHHHHHHHHHHH--hCCCEEEEEEeCCC
Confidence 78999999887 33333333333 36789999997643
No 85
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=40.12 E-value=67 Score=29.10 Aligned_cols=54 Identities=7% Similarity=-0.020 Sum_probs=39.0
Q ss_pred cCChHHHHHHHhhhcCCCEEEEcCcCCCccch-hhccCChHHHHHhhCCCcceEEEEe
Q 025234 146 SKATAKAILDLISVANVTSLVMGTKLSPRSRL-FTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 146 g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~-~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
......+|++.|++.+.-.|+.-+.+.-.... ..+ ......+.+++. +||.+==
T Consensus 25 n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~-~~~~~~~a~~~~--VPValHL 79 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYI-VALCSAASTTYN--MPLALHL 79 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHH-HHHHHHHHHHCC--CCEEEEC
Confidence 33458999999999999999998876421111 112 467788999999 9997643
No 86
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=39.78 E-value=2.4e+02 Score=24.86 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=53.9
Q ss_pred EEEecCCH-----HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 56 YVAVGKDD-----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIR 130 (256)
Q Consensus 56 LVaVD~S~-----~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~ 130 (256)
||+|.+.+ ..++++-+.++...+++|.++- ..+.. ++ ...+.+.+
T Consensus 1 l~~iGG~~~~~~~~~i~~~~~~lag~~~~rI~~ip---tAS~~-------------~~--------------~~~~~~~~ 50 (250)
T TIGR02069 1 LVIIGGAEDKVGDREILREFVSRAGGEDAIIVIIT---SASEE-------------PR--------------EVGERYIT 50 (250)
T ss_pred CeEEeCccccCChHHHHHHHHHHhCCCCceEEEEe---CCCCC-------------hH--------------HHHHHHHH
Confidence 45666654 5588888898887777777543 21100 00 11122333
Q ss_pred HhhcCCCc-EEEEEEEc--CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHh
Q 025234 131 LCNDAKVT-VETMLVES--KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKK 190 (256)
Q Consensus 131 ~~~~~gv~-v~~~lv~g--~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~ 190 (256)
.++..|++ +....+.. ..-.+++++... ++|.|+++.-....+...+ .++-...+++
T Consensus 51 ~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~--~ad~I~~~GGnq~~l~~~l-~~t~l~~~l~ 110 (250)
T TIGR02069 51 IFSRLGVKEVKILDVREREDASDENAIALLS--NATGIFFTGGDQLRITSLL-GDTPLLDRLR 110 (250)
T ss_pred HHHHcCCceeEEEecCChHHccCHHHHHHHh--hCCEEEEeCCCHHHHHHHH-cCCcHHHHHH
Confidence 33345663 44444421 111244555553 8899999887654444334 3555555554
No 87
>PRK13337 putative lipid kinase; Reviewed
Probab=39.71 E-value=1.6e+02 Score=26.34 Aligned_cols=68 Identities=6% Similarity=-0.030 Sum_probs=38.0
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhh-CCCcceEEEEeCCc
Q 025234 129 IRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKN-APDYCEVTIVHDGK 205 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~-a~~~cPVLVV~~~~ 205 (256)
...+...+++++....+...=...+.+.+.+.+.|+||+..-. +.+. .+...++.. .. .|+-++|.|.
T Consensus 25 ~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGD-GTl~------~vv~gl~~~~~~--~~lgiiP~GT 93 (304)
T PRK13337 25 LQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGD-GTLN------EVVNGIAEKENR--PKLGIIPVGT 93 (304)
T ss_pred HHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCC-CHHH------HHHHHHhhCCCC--CcEEEECCcC
Confidence 3334456777766655532225677766666678877655433 2222 333444432 24 6888999764
No 88
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=39.37 E-value=71 Score=28.96 Aligned_cols=54 Identities=7% Similarity=0.007 Sum_probs=38.1
Q ss_pred EcCChHHHHHHHhhhcCCCEEEEcCcCCCccch-hhccCChHHHHHhhCCCcceEEEE
Q 025234 145 ESKATAKAILDLISVANVTSLVMGTKLSPRSRL-FTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 145 ~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~-~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
.......++++.|++.+...|+.-+.+...... -++ ......+.++++ +||.+=
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~-~~~~~~~a~~~~--VPValH 80 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYI-VAIAEVAARKYN--IPLALH 80 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHH-HHHHHHHHHHCC--CCEEEE
Confidence 333458999999999999999988775421111 111 466778889999 998764
No 89
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=39.08 E-value=1.6e+02 Score=26.07 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=37.8
Q ss_pred ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 148 ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 148 ~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
.....|++.+.+.+-|.|.+|....-.... . -.+.++|-.+.. .||++-|..
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~gvt~~~-~--~~~v~~ik~~~~--lPvilfP~~ 79 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDGVTEEN-V--DNVVEAIKERTD--LPVILFPGS 79 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCcccccHHH-H--HHHHHHHHhhcC--CCEEEecCC
Confidence 346789999999999999999876432222 1 245566766888 999998864
No 90
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=38.61 E-value=2.1e+02 Score=23.00 Aligned_cols=23 Identities=4% Similarity=0.160 Sum_probs=19.1
Q ss_pred HHHHHHhhhcCCCEEEEcCcCCC
Q 025234 151 KAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
..+.++|.+.+++.|++|.+...
T Consensus 66 ~~l~~~a~~~g~~~i~~G~~~~d 88 (169)
T cd01995 66 SIAAAYAEALGAEAIIIGVNAED 88 (169)
T ss_pred HHHHHHHHHCCCCEEEEeeccCc
Confidence 45667889999999999999854
No 91
>PRK14057 epimerase; Provisional
Probab=38.52 E-value=2.9e+02 Score=24.68 Aligned_cols=34 Identities=9% Similarity=0.177 Sum_probs=21.4
Q ss_pred CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCc
Q 025234 135 AKVTVETMLVESKATAKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 135 ~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~ 170 (256)
.+..+.. .+.|+ +...-+..+.+.++|.+|+|+-
T Consensus 190 ~~~~~~I-eVDGG-I~~~ti~~l~~aGad~~V~GSa 223 (254)
T PRK14057 190 KREGKII-VIDGS-LTQDQLPSLIAQGIDRVVSGSA 223 (254)
T ss_pred cCCCceE-EEECC-CCHHHHHHHHHCCCCEEEEChH
Confidence 4554443 34554 4555555566689999999963
No 92
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=38.34 E-value=79 Score=28.72 Aligned_cols=55 Identities=15% Similarity=0.070 Sum_probs=38.8
Q ss_pred EcCChHHHHHHHhhhcCCCEEEEcCcCCCc-cchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 145 ESKATAKAILDLISVANVTSLVMGTKLSPR-SRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 145 ~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~-~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
.......++++.|++.+...|+..+.+.-. .....+ ......+.++++ +||.+==
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~-~~~~~~~a~~~~--VPValHL 81 (286)
T PRK12738 26 HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEI-YALCSAYSTTYN--MPLALHL 81 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHH-HHHHHHHHHHCC--CCEEEEC
Confidence 334458999999999999999987765421 111112 467778889999 9997643
No 93
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=37.95 E-value=92 Score=28.13 Aligned_cols=64 Identities=9% Similarity=-0.039 Sum_probs=41.8
Q ss_pred CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccch-hhccCChHHHHHhhCCCcceEEEE
Q 025234 135 AKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRL-FTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 135 ~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~-~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
.+..+=.--+.......+|++.|++.+.-+|+..+.+.-.... .++ +.......++++ +||.+=
T Consensus 16 ~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~-~~~~~~~a~~~~--vpv~lH 80 (281)
T PRK06806 16 ENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLI-GPLMVAAAKQAK--VPVAVH 80 (281)
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHH-HHHHHHHHHHCC--CCEEEE
Confidence 3443333333333448999999999999999998876422111 122 466677889999 998754
No 94
>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase. It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.
Probab=37.62 E-value=2.8e+02 Score=25.24 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=19.2
Q ss_pred HHHHHHHhhhcC-CCEEEEcCcCCC
Q 025234 150 AKAILDLISVAN-VTSLVMGTKLSP 173 (256)
Q Consensus 150 ~eaIl~~a~e~~-aDLIVmGs~~~~ 173 (256)
.+.+.++|++.+ ++.|+.|++...
T Consensus 88 ~~~l~~~A~~~g~~~~Ia~Gh~~dD 112 (295)
T cd01997 88 IEVFEEEAKKLGLAEYLAQGTLYPD 112 (295)
T ss_pred HHHHHHHHHHcCCCCEEEECCcccc
Confidence 345778899999 999999988643
No 95
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=36.39 E-value=28 Score=30.45 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=26.4
Q ss_pred cccccCC-ccccCcCCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEE
Q 025234 36 GEDHSRS-IGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLH 85 (256)
.++||++ ++.-+.+..-++|++++|.++ .+++.| ...++.+.+.|
T Consensus 15 a~~wDn~Gl~vg~~~~~v~~V~~~ld~t~-~vi~~A----~~~~~dlIItH 60 (241)
T PF01784_consen 15 AEDWDNVGLQVGDPEQEVKKVLVALDATP-EVIEEA----IEKGADLIITH 60 (241)
T ss_dssp STTTS-EEEEES-SSSBESEEEEESS-SH-HHHHHH----HHTT-SEEEES
T ss_pred cCCCCCCceEECcCccccCEEEEEEeCCH-HHHHHH----HHcCCCEEEEc
Confidence 3477754 323345667899999999998 223333 33677777776
No 96
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=36.18 E-value=98 Score=23.62 Aligned_cols=62 Identities=10% Similarity=-0.007 Sum_probs=37.1
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 129 IRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+.++..|++++. +..+ ...+-+.....++|+|++|.+=+-.. .-...+..... +||.+++.
T Consensus 22 k~~~~e~gi~~~i---~a~~-~~e~~~~~~~~~~DvIll~PQi~~~~-------~~i~~~~~~~~--ipv~~I~~ 83 (104)
T PRK09590 22 TEYLKEQGKDIEV---DAIT-ATEGEKAIAAAEYDLYLVSPQTKMYF-------KQFEEAGAKVG--KPVVQIPP 83 (104)
T ss_pred HHHHHHCCCceEE---EEec-HHHHHHhhccCCCCEEEEChHHHHHH-------HHHHHHhhhcC--CCEEEeCH
Confidence 3444557887553 2233 34565665556799999998543211 22244555556 89999975
No 97
>TIGR00930 2a30 K-Cl cotransporter.
Probab=35.93 E-value=5.7e+02 Score=27.32 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=59.7
Q ss_pred CeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIR 130 (256)
Q Consensus 53 ~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~ 130 (256)
-.|||.++... ...+++|-.+.+ ...-.++.||...... +.. ...+..++.+.++.+
T Consensus 576 PqiLvl~~~p~~~~~Ll~f~~~l~~-~~gl~i~~~v~~~~~~---------------~~~-----~~~~~~~~~~~~~~~ 634 (953)
T TIGR00930 576 PQCLVLTGPPVCRPALLDFASQFTK-GKGLMICGSVIQGPRL---------------ECV-----KEAQAAEAKIQTWLE 634 (953)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHhcc-CCcEEEEEEEecCchh---------------hhH-----HHHHHHHHHHHHHHH
Confidence 35888886555 889999987763 4456777799864310 000 011122233333433
Q ss_pred HhhcCCCcEEEEEEEcCChHHHHHHHhhhc-----CCCEEEEcCcCC
Q 025234 131 LCNDAKVTVETMLVESKATAKAILDLISVA-----NVTSLVMGTKLS 172 (256)
Q Consensus 131 ~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~-----~aDLIVmGs~~~ 172 (256)
..+++.-..++.+.++.+++-..++.. .+..|+||-...
T Consensus 635 ---~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~ 678 (953)
T TIGR00930 635 ---KNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKD 678 (953)
T ss_pred ---HhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccc
Confidence 346766666777778888888877764 478899998753
No 98
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=35.74 E-value=1.3e+02 Score=28.98 Aligned_cols=59 Identities=12% Similarity=-0.036 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcC
Q 025234 110 VRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGT 169 (256)
Q Consensus 110 ~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs 169 (256)
+..+++.......++++++.+.+...|..+...- ......+.|++++++.++..||.|.
T Consensus 38 ~~~ik~~~~~~ld~~l~~~~~~~~~~g~~v~~a~-t~~eA~~~v~~i~~~~~~~~vv~~k 96 (432)
T TIGR00273 38 VKEIKLKVLENLDFYLDQLKENVTQRGGHVYYAK-TAEEARKIIGKVAQEKNGKKVVKSK 96 (432)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 3444455555667778888887777776654322 2244467788999999999999984
No 99
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=34.82 E-value=1e+02 Score=23.28 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=37.3
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+..+.++..|++++..- .+ ..++-+.+. ++|+|++|.+-+..+ ......+.... +||.+|+.
T Consensus 19 km~~~a~~~gi~~~i~a---~~-~~e~~~~~~--~~Dvill~PQv~~~~-------~~i~~~~~~~~--ipv~~I~~ 80 (99)
T cd05565 19 ALNKGAKERGVPLEAAA---GA-YGSHYDMIP--DYDLVILAPQMASYY-------DELKKDTDRLG--IKLVTTTG 80 (99)
T ss_pred HHHHHHHHCCCcEEEEE---ee-HHHHHHhcc--CCCEEEEcChHHHHH-------HHHHHHhhhcC--CCEEEeCH
Confidence 33344455788776432 23 455666654 789999998654322 22244555556 89988874
No 100
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=34.59 E-value=2.7e+02 Score=27.01 Aligned_cols=52 Identities=13% Similarity=0.042 Sum_probs=34.0
Q ss_pred CChHHHHHHHhhhcCCCEEEEcCcCCCccch--hhccCChHH---------HHHhhCCCcceEEEEe
Q 025234 147 KATAKAILDLISVANVTSLVMGTKLSPRSRL--FTKKLSKGE---------FVKKNAPDYCEVTIVH 202 (256)
Q Consensus 147 ~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~--~~l~GSva~---------~Vl~~a~~~cPVLVV~ 202 (256)
.. .+.|++.+++.++|++|+-+=.--.... ... ||+++ ++.+... +++++|-
T Consensus 155 t~-~e~I~~~l~~~~p~lvVIDSIQT~~s~~~~Sap-GsVsQVRe~t~~L~~~AK~~~--i~~fiVG 217 (456)
T COG1066 155 TN-LEDIIAELEQEKPDLVVIDSIQTLYSEEITSAP-GSVSQVREVAAELMRLAKTKN--IAIFIVG 217 (456)
T ss_pred cC-HHHHHHHHHhcCCCEEEEeccceeecccccCCC-CcHHHHHHHHHHHHHHHHHcC--CeEEEEE
Confidence 44 6999999999999999998754211110 011 55543 3555666 8888775
No 101
>PRK10799 metal-binding protein; Provisional
Probab=34.05 E-value=56 Score=28.75 Aligned_cols=44 Identities=20% Similarity=0.153 Sum_probs=26.1
Q ss_pred ccccCCccccCcCCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEE
Q 025234 37 EDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLH 85 (256)
++|+++-=+.......++|++++|.+. ..++.|...++.+.+.|
T Consensus 20 ~~wd~~Gl~v~~~~~v~~I~~alD~t~-----~vi~~A~~~~~dlIitH 63 (247)
T PRK10799 20 SDYAPNGLQVEGRETVQKIVTGVTASQ-----ALLDEAVRLQADAVIVH 63 (247)
T ss_pred ccCCCceeEeCCcccccEEEEEeCCCH-----HHHHHHHHCCCCEEEEC
Confidence 356643312122246899999999998 22333333577777775
No 102
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=33.55 E-value=3.9e+02 Score=24.70 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=20.5
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
...+.++|++.++|.|+.|.+.+.
T Consensus 105 ~~~l~~~A~~~g~~~IATGH~a~d 128 (346)
T PRK00143 105 FKAFLEYARELGADYIATGHYARI 128 (346)
T ss_pred HHHHHHHHHHCCCCEEEeeeeccc
Confidence 467889999999999999998753
No 103
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=33.36 E-value=64 Score=30.22 Aligned_cols=63 Identities=10% Similarity=0.120 Sum_probs=46.3
Q ss_pred CCcEEEEEEEcCC--------hHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 136 KVTVETMLVESKA--------TAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 136 gv~v~~~lv~g~~--------v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+.++...++-|+. +.+.|++.+++.++|++|.|--=.-+.-... -|.++..|-++.. |||+..
T Consensus 47 ~~eIv~TiiCGDnyf~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~a-cg~v~~aV~e~~~--IP~vta 117 (349)
T PF07355_consen 47 DAEIVATIICGDNYFNENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVA-CGEVAKAVQEKLG--IPVVTA 117 (349)
T ss_pred CCEEEEEEEECcchhhhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHH-HHHHHHHHHHhhC--CCEEEE
Confidence 4566666776643 4678999999999999999987542222222 4899999999999 998743
No 104
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=33.22 E-value=3e+02 Score=23.65 Aligned_cols=53 Identities=9% Similarity=0.049 Sum_probs=32.7
Q ss_pred HHHHHHHhhhcCC-CEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 150 AKAILDLISVANV-TSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 150 ~eaIl~~a~e~~a-DLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+.-|++..+..+. |.|++=..-.......|+-+-+.+.|.+... +||.+|+..
T Consensus 149 g~Dii~~L~~~~~~d~lllP~~ml~~~~~~fLDD~t~~el~~~lg--~~v~vv~~~ 202 (204)
T PF04459_consen 149 GQDIIEQLKGKELGDLLLLPDVMLRHGEGVFLDDMTLEELEERLG--VPVIVVRGP 202 (204)
T ss_pred HHHHHHHhCcCCCCCEEEECHHHhcCCCCccCCCCcHHHHHHHhC--CcEEEeCCC
Confidence 4555555544333 7777766543322233444677788888888 888888753
No 105
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=32.68 E-value=2.2e+02 Score=22.59 Aligned_cols=71 Identities=8% Similarity=-0.011 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 125 LQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
+.-+...++..|+++...=.. -+ .+.|++.|.+.++|.|.+............ .+.+.+-+.-..+++|++
T Consensus 20 ~~iv~~~lr~~G~eVi~LG~~-vp-~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~---~~~~~L~~~~~~~~~i~v 90 (137)
T PRK02261 20 NKILDRALTEAGFEVINLGVM-TS-QEEFIDAAIETDADAILVSSLYGHGEIDCR---GLREKCIEAGLGDILLYV 90 (137)
T ss_pred HHHHHHHHHHCCCEEEECCCC-CC-HHHHHHHHHHcCCCEEEEcCccccCHHHHH---HHHHHHHhcCCCCCeEEE
No 106
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=32.63 E-value=1.5e+02 Score=25.89 Aligned_cols=84 Identities=8% Similarity=0.093 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEc----CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceE
Q 025234 123 NLLQKYIRLCNDAKVTVETMLVES----KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 198 (256)
Q Consensus 123 ~~L~~~~~~~~~~gv~v~~~lv~g----~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPV 198 (256)
..+..|.+.+...|.+|...-... .+..+.|.+++++.+++-|++-.-+.-.+.. ....+..... ||+
T Consensus 49 saMRhfa~~L~~~G~~V~Y~~~~~~~~~~s~~~~L~~~~~~~~~~~~~~~~P~d~~l~~------~l~~~~~~~~--i~~ 120 (224)
T PF04244_consen 49 SAMRHFADELRAKGFRVHYIELDDPENTQSFEDALARALKQHGIDRLHVMEPGDYRLEQ------RLESLAQQLG--IPL 120 (224)
T ss_dssp HHHHHHHHHHHHTT--EEEE-TT-TT--SSHHHHHHHHHHHH----EEEE--S-HHHHH------HHHH----SS--S-E
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHHHcCCCEEEEECCCCHHHHH------HHHhhhcccC--Cce
Confidence 356667777777899988766542 2567899999999999999998876543332 2245666778 999
Q ss_pred EEEeCCcccccchhhh
Q 025234 199 TIVHDGKKVVDGQKVA 214 (256)
Q Consensus 199 LVV~~~~~~~~~~~~~ 214 (256)
.+++...-...++.-.
T Consensus 121 ~~~~~~~Fl~s~~~f~ 136 (224)
T PF04244_consen 121 EVLEDPHFLTSREEFA 136 (224)
T ss_dssp EEE--TTSSS-HHHHH
T ss_pred EEeCCCCccCCHHHHH
Confidence 9999877666665543
No 107
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=32.40 E-value=82 Score=27.90 Aligned_cols=46 Identities=13% Similarity=0.049 Sum_probs=25.8
Q ss_pred CCCEEEEcCcCC---CccchhhccCChHHH-HHhhCCCcceEEEEeCCcccccc
Q 025234 161 NVTSLVMGTKLS---PRSRLFTKKLSKGEF-VKKNAPDYCEVTIVHDGKKVVDG 210 (256)
Q Consensus 161 ~aDLIVmGs~~~---~~~~~~~l~GSva~~-Vl~~a~~~cPVLVV~~~~~~~~~ 210 (256)
++|.+++|+..- |..-. ..|+-.-. +.++.. +||+|+..-.+....
T Consensus 176 ~vd~VliGad~v~~nG~v~n--k~Gt~~~a~~Ak~~~--vPv~v~~~~~K~~~~ 225 (282)
T PF01008_consen 176 DVDKVLIGADAVLANGGVVN--KVGTLQLALAAKEFN--VPVYVLAESYKFSPR 225 (282)
T ss_dssp TESEEEEE-SEEETTS-EEE--ETTHHHHHHHHHHTT---EEEEE--GGGBETT
T ss_pred hCCeeEEeeeEEecCCCEee--hhhHHHHHHHHHhhC--CCEEEEccccccccc
Confidence 599999999863 22221 12544444 446666 999999876555444
No 108
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=31.74 E-value=1.3e+02 Score=27.25 Aligned_cols=65 Identities=6% Similarity=0.019 Sum_probs=41.4
Q ss_pred CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCcc-chhhccCChHHHHHhhC--CCcceEEEE
Q 025234 135 AKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRS-RLFTKKLSKGEFVKKNA--PDYCEVTIV 201 (256)
Q Consensus 135 ~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~-~~~~l~GSva~~Vl~~a--~~~cPVLVV 201 (256)
.+..+=.--+.......+|++.|++.+.-+|+.-+.+.-.. ...-..........+++ . +||.+=
T Consensus 16 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~~~~--VPV~lH 83 (288)
T TIGR00167 16 EGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAYPYG--VPVALH 83 (288)
T ss_pred CCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhccCC--CcEEEE
Confidence 34433333333444589999999999999999987764221 11101146667788888 7 898754
No 109
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=31.61 E-value=99 Score=27.93 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=42.3
Q ss_pred CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 135 AKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 135 ~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+..+=..-+.......++++.|++.+..+|+.-+.+.-.....-........+.++++ +||.+==+
T Consensus 11 ~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~--VPV~lHLD 77 (276)
T cd00947 11 GGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS--VPVALHLD 77 (276)
T ss_pred CCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC--CCEEEECC
Confidence 34433333333334589999999999999999887764211111011466677888998 99876533
No 110
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=31.21 E-value=2.5e+02 Score=21.78 Aligned_cols=27 Identities=11% Similarity=0.212 Sum_probs=18.8
Q ss_pred HHHHHHhhhcCCCEEEEcCcCCCccch
Q 025234 151 KAILDLISVANVTSLVMGTKLSPRSRL 177 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~~~~~~ 177 (256)
+.+.+++++.+.+.+++|.|..-...+
T Consensus 95 ~~~~~~~~~~~~~~~~~G~r~de~~~r 121 (173)
T cd01713 95 EPLRRALKELGVVAWITGIRRDESARR 121 (173)
T ss_pred hHHHHHHHhcCCeEEEEEeccccchhh
Confidence 345566777788999999987644443
No 111
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=31.04 E-value=84 Score=23.42 Aligned_cols=63 Identities=8% Similarity=0.073 Sum_probs=37.2
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+..+.+.+.|++++..- .+ ...+-+.+. ++|+|++|.+=+... ......+.... +||.+++..
T Consensus 22 k~~~~~~~~gi~~~v~a---~~-~~~~~~~~~--~~Dvill~pqi~~~~-------~~i~~~~~~~~--ipv~~I~~~ 84 (95)
T TIGR00853 22 KMNKAAEEYGVPVKIAA---GS-YGAAGEKLD--DADVVLLAPQVAYML-------PDLKKETDKKG--IPVEVINGA 84 (95)
T ss_pred HHHHHHHHCCCcEEEEE---ec-HHHHHhhcC--CCCEEEECchHHHHH-------HHHHHHhhhcC--CCEEEeChh
Confidence 33444455788765432 33 344555553 689999998654322 22244566666 899999763
No 112
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=30.98 E-value=3.6e+02 Score=23.45 Aligned_cols=34 Identities=12% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCc
Q 025234 135 AKVTVETMLVESKATAKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 135 ~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~ 170 (256)
.+..+.. .+.|+ +..+-+..+.+.++|.+|+|+.
T Consensus 168 ~~~~~~I-eVDGG-I~~eti~~l~~aGaDi~V~GSa 201 (223)
T PRK08745 168 LGKPIRL-EIDGG-VKADNIGAIAAAGADTFVAGSA 201 (223)
T ss_pred cCCCeeE-EEECC-CCHHHHHHHHHcCCCEEEEChh
Confidence 3444333 34554 4555555666689999999964
No 113
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=30.88 E-value=1.4e+02 Score=26.14 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=37.9
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 150 AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
..+..+..++.++|.||+++-.... .+-+.+..++..+. .|.+||.++.
T Consensus 49 eaav~~~~e~~~pDfvi~isPNpaa-----PGP~kARE~l~~s~--~PaiiigDaP 97 (277)
T COG1927 49 EAAVTEMLEEFNPDFVIYISPNPAA-----PGPKKAREILSDSD--VPAIIIGDAP 97 (277)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCC-----CCchHHHHHHhhcC--CCEEEecCCc
Confidence 3456677888999999999876542 23477788899999 9999998754
No 114
>PRK13059 putative lipid kinase; Reviewed
Probab=30.53 E-value=2.5e+02 Score=25.13 Aligned_cols=68 Identities=10% Similarity=-0.064 Sum_probs=35.0
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhh-CCCcceEEEEeCCc
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKN-APDYCEVTIVHDGK 205 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~-a~~~cPVLVV~~~~ 205 (256)
....+...++++......... ..+....+.+.+.|.||+.. |.+.+ ..+...++.. .+ +|+-++|-|.
T Consensus 24 i~~~l~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~d~vi~~G-GDGTv------~evv~gl~~~~~~--~~lgviP~GT 92 (295)
T PRK13059 24 VIRIHQEKGYLVVPYRISLEY-DLKNAFKDIDESYKYILIAG-GDGTV------DNVVNAMKKLNID--LPIGILPVGT 92 (295)
T ss_pred HHHHHHHCCcEEEEEEccCcc-hHHHHHHHhhcCCCEEEEEC-CccHH------HHHHHHHHhcCCC--CcEEEECCCC
Confidence 333444457665543333222 22333344456778766543 33332 2444556543 45 8999999764
No 115
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=30.48 E-value=1e+02 Score=27.51 Aligned_cols=123 Identities=16% Similarity=0.156 Sum_probs=66.0
Q ss_pred CeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL 131 (256)
Q Consensus 53 ~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~ 131 (256)
+.|-+|+..+= ++.-.-|+.+|...++.++=++++.... .+..|-+-. ++. .+.++...
T Consensus 82 r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN~~tg~~--~tdqGiieg-----------------~A~-e~~r~r~~ 141 (263)
T COG0434 82 REVSIPVGVNVLRNDAVAALAIAYAVGADFIRVNVLTGAY--ATDQGIIEG-----------------NAA-ELARYRAR 141 (263)
T ss_pred HhccccceeeeeccccHHHHHHHHhcCCCEEEEEeeeceE--ecccceecc-----------------hHH-HHHHHHHh
Confidence 44666666666 5555567778888899999888887642 122232110 111 11122222
Q ss_pred hhcCCCcEE--EEEEEc-----CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 132 CNDAKVTVE--TMLVES-----KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 132 ~~~~gv~v~--~~lv~g-----~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+. .++++- ..+..+ .++.+.+.+.+....+|-||+-.+.-+..... ---..+-+.++ .|||+=.
T Consensus 142 L~-~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~----~el~~a~~~~~--~pvlvGS 212 (263)
T COG0434 142 LG-SRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTGSPPDL----EELKLAKEAVD--TPVLVGS 212 (263)
T ss_pred cc-CCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCCCCCCH----HHHHHHHhccC--CCEEEec
Confidence 22 223221 111111 35667777888889999988866544322211 11134556667 8888743
No 116
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=30.45 E-value=1.1e+02 Score=27.67 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=37.9
Q ss_pred cCChHHHHHHHhhhcCCCEEEEcCcCCC---ccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 146 SKATAKAILDLISVANVTSLVMGTKLSP---RSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 146 g~~v~eaIl~~a~e~~aDLIVmGs~~~~---~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
......++++.|++.+.-.|+.-+.+.- +.. .+ ......+.++++ +||.+=
T Consensus 27 n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~-~~--~~~~~~~A~~~~--VPV~lH 80 (284)
T PRK09195 27 NLETMQVVVETAAELHSPVIIAGTPGTFSYAGTE-YL--LAIVSAAAKQYH--HPLALH 80 (284)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHH-HH--HHHHHHHHHHCC--CCEEEE
Confidence 3345899999999999999998877642 211 22 466778899999 998754
No 117
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=30.30 E-value=1.1e+02 Score=27.86 Aligned_cols=55 Identities=9% Similarity=0.034 Sum_probs=37.4
Q ss_pred cCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 146 SKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 146 g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
......++++.|++.+.-+|+..+.+.-.....-........+.+++. +||.+==
T Consensus 27 n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~--vPV~lHL 81 (283)
T PRK07998 27 NLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD--VPVSLHL 81 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC--CCEEEEC
Confidence 334578999999999999999987764211111011456677888998 9987643
No 118
>cd03557 L-arabinose_isomerase L-Arabinose isomerase (AI) catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion into D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=30.21 E-value=3e+02 Score=27.01 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=34.2
Q ss_pred HHHHHHHhhhc----CCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 150 AKAILDLISVA----NVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 150 ~eaIl~~a~e~----~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
.+.|.+..++. ++|.||+-.+.-+..+.+ -.+++... +|||+....
T Consensus 51 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~-------i~~~~~l~--~PvL~~~~q 100 (484)
T cd03557 51 PDEILAVCREANADDNCAGVITWMHTFSPAKMW-------IAGLTALQ--KPLLHLHTQ 100 (484)
T ss_pred HHHHHHHHHHccccCCccEEEEccCCCchHHHH-------HHHHHHcC--CCEEEEccC
Confidence 57777777774 599999998887654432 35578888 999999865
No 119
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=30.07 E-value=3.1e+02 Score=23.43 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=21.0
Q ss_pred CCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 52 ASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 52 ~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
-.++|+-+.|.-+..+ |+-+..++|.+|..||...+.
T Consensus 3 ~gk~l~LlSGGiDSpV--Aa~lm~krG~~V~~l~f~~~~ 39 (197)
T PF02568_consen 3 QGKALALLSGGIDSPV--AAWLMMKRGCEVIALHFDSPP 39 (197)
T ss_dssp T-EEEEE-SSCCHHHH--HHHHHHCBT-EEEEEEEE-TT
T ss_pred CceEEEEecCCccHHH--HHHHHHHCCCEEEEEEEECCC
Confidence 3567777766552222 233445579999999998654
No 120
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=30.00 E-value=82 Score=27.69 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=28.4
Q ss_pred cccccCC-ccccCcCCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEE
Q 025234 36 GEDHSRS-IGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLH 85 (256)
.++|+++ ++--+.+...++|++++|.++ .++++|+ ..++.+.+.|
T Consensus 19 a~~wDn~Gl~vg~~~~~v~~I~~alD~t~-~vi~~Ai----~~~~dlIitH 64 (249)
T TIGR00486 19 AEDGDNNGLQVGSGNEEVKKVVVAVDASE-SVADEAV----RLGADLIITH 64 (249)
T ss_pred hcCCCCCeeEecCCCcccCEEEEEecCCH-HHHHHHH----HCCCCEEEEc
Confidence 4467633 323345667899999999998 2233333 2467777776
No 121
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=29.72 E-value=4.2e+02 Score=23.86 Aligned_cols=102 Identities=21% Similarity=0.227 Sum_probs=56.3
Q ss_pred hhhh-hcccccCCccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCH
Q 025234 31 EIVE-IGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQ 107 (256)
Q Consensus 31 ~~~~-~~~~~~~~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~ 107 (256)
++.+ +++.++-.++....+ ...||.|-+.++. ..+|-.+...- ..+++|.+ |+....
T Consensus 63 ~l~~~~~~~~~l~i~l~~~~-~~~ki~vl~Sg~g~nl~~l~~~~~~g-~l~~~i~~--visn~~---------------- 122 (280)
T TIGR00655 63 AFKSALAEKFEMTWELILAD-KLKRVAILVSKEDHCLGDLLWRWYSG-ELDAEIAL--VISNHE---------------- 122 (280)
T ss_pred HHHHHHHHHhCCEEEEecCC-CCcEEEEEEcCCChhHHHHHHHHHcC-CCCcEEEE--EEEcCh----------------
Confidence 3444 666655344334333 4578999888887 66666665322 23455444 443321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE-c--CChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 108 EQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVE-S--KATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 108 e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~-g--~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
.+.. .+...|+++...-.. . ......+++..++.++|+||+..-.
T Consensus 123 ------------~~~~-------~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~~~~~Dlivlagym 170 (280)
T TIGR00655 123 ------------DLRS-------LVERFGIPFHYIPATKDNRVEHEKRQLELLKQYQVDLVVLAKYM 170 (280)
T ss_pred ------------hHHH-------HHHHhCCCEEEcCCCCcchhhhHHHHHHHHHHhCCCEEEEeCch
Confidence 0000 133457776543221 1 1124578888899999999998744
No 122
>PRK13055 putative lipid kinase; Reviewed
Probab=29.34 E-value=3.1e+02 Score=25.03 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCCCcEEEEEEEc--CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhh-CCCcceEEEE
Q 025234 125 LQKYIRLCNDAKVTVETMLVES--KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKN-APDYCEVTIV 201 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g--~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~-a~~~cPVLVV 201 (256)
+.+....+...++.++...... +. +..+.+.+.+.++|+||+..-. +.+. .+...++.. .. .|+-++
T Consensus 22 ~~~i~~~l~~~g~~~~i~~t~~~~~~-a~~~~~~~~~~~~d~vvv~GGD-GTl~------evvngl~~~~~~--~~Lgii 91 (334)
T PRK13055 22 VADILDILEQAGYETSAFQTTPEPNS-AKNEAKRAAEAGFDLIIAAGGD-GTIN------EVVNGIAPLEKR--PKMAII 91 (334)
T ss_pred HHHHHHHHHHcCCeEEEEEeecCCcc-HHHHHHHHhhcCCCEEEEECCC-CHHH------HHHHHHhhcCCC--CcEEEE
Confidence 3444444555677777655542 23 5667777766788888766433 2222 233444432 23 688899
Q ss_pred eCCc
Q 025234 202 HDGK 205 (256)
Q Consensus 202 ~~~~ 205 (256)
|.|.
T Consensus 92 P~GT 95 (334)
T PRK13055 92 PAGT 95 (334)
T ss_pred CCCc
Confidence 9764
No 123
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=29.05 E-value=4.8e+02 Score=24.29 Aligned_cols=128 Identities=7% Similarity=0.052 Sum_probs=74.3
Q ss_pred EEEEec--C---CH-----HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHH
Q 025234 55 VYVAVG--K---DD-----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNL 124 (256)
Q Consensus 55 ILVaVD--~---S~-----~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~ 124 (256)
++++++ + +. ...+.|-+..++..|+..+-++|+-..... .+.+.+..+.
T Consensus 86 Lil~~e~tg~d~t~~gr~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~---------------------~~~~~~~~~~ 144 (340)
T PRK12858 86 LLLSYEKTGYDATAPGRLPDLLDNWSVRRIKEAGADAVKLLLYYRPDED---------------------DAINDRKHAF 144 (340)
T ss_pred eEEEecccccccCCCCCCccccccccHHHHHHcCCCEEEEEEEeCCCcc---------------------hHHHHHHHHH
Confidence 777766 3 32 567778888888889888888877543110 1122334457
Q ss_pred HHHHHHHhhcCCCcEEEEE-EEcC------------ChHHHHH----HHhh-hcCCCEEEEcCcCCCcc-ch------hh
Q 025234 125 LQKYIRLCNDAKVTVETML-VESK------------ATAKAIL----DLIS-VANVTSLVMGTKLSPRS-RL------FT 179 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~l-v~g~------------~v~eaIl----~~a~-e~~aDLIVmGs~~~~~~-~~------~~ 179 (256)
+.+..+.|...|+++-..+ .... .-.+.|. ..++ ++++|+|=+--.+.... .. ..
T Consensus 145 l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~ 224 (340)
T PRK12858 145 VERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAY 224 (340)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccc
Confidence 8888888988999865543 2110 0012333 2332 58899887755433110 00 00
Q ss_pred ccC---ChHHHHHhhCCCcceEEEEeCCc
Q 025234 180 KKL---SKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 180 l~G---Sva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
... ..-..+...++ +|+++.-.+.
T Consensus 225 ~~~~~~~~f~~~~~a~~--~P~vvlsgG~ 251 (340)
T PRK12858 225 TQEEAFKLFREQSDATD--LPFIFLSAGV 251 (340)
T ss_pred cHHHHHHHHHHHHhhCC--CCEEEECCCC
Confidence 000 22356777889 9999998776
No 124
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=29.03 E-value=4e+02 Score=23.36 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.4
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcC
Q 025234 144 VESKATAKAILDLISVANVTSLVMGT 169 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs 169 (256)
+.|+ +..+-...+.+.++|.+|+|+
T Consensus 174 VDGG-I~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 174 VDGG-INLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred EeCC-cCHHHHHHHHHcCCCEEEEEE
Confidence 4554 466677777778999999999
No 125
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=29.03 E-value=1.5e+02 Score=20.77 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEE
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLV 84 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LL 84 (256)
.++|+++.|.++ ..|.+...+.....+-++..+
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~~~ 77 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKLGLNVRVL 77 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 489999999999 777777777777667666543
No 126
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=28.86 E-value=1.1e+02 Score=25.97 Aligned_cols=33 Identities=9% Similarity=-0.023 Sum_probs=24.0
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEE
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLV 84 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LL 84 (256)
+++|+++|.||- ..+++.+-.+.+..+.+|.++
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~g~~V~vv 35 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVGEIETHLV 35 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 479999999997 777777766654357675544
No 127
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=28.63 E-value=3.1e+02 Score=24.20 Aligned_cols=70 Identities=11% Similarity=0.056 Sum_probs=36.4
Q ss_pred HHHHHhhcCCCcEEEEEEEcC-ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 127 KYIRLCNDAKVTVETMLVESK-ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~-~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
++...+...++++.....+.. . ...+++.+.+.++|.||+.. |.+.+. .+...+..... ..|+-++|.|.
T Consensus 23 ~i~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~d~ivv~G-GDGTl~------~v~~~l~~~~~-~~~lgiiP~Gt 93 (293)
T TIGR00147 23 EVIMLLREEGMEIHVRVTWEKGD-AARYVEEARKFGVDTVIAGG-GDGTIN------EVVNALIQLDD-IPALGILPLGT 93 (293)
T ss_pred HHHHHHHHCCCEEEEEEecCccc-HHHHHHHHHhcCCCEEEEEC-CCChHH------HHHHHHhcCCC-CCcEEEEcCcC
Confidence 334444456777665555443 3 34555555556788777644 333222 33344544222 13677898764
No 128
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=28.41 E-value=2.9e+02 Score=24.61 Aligned_cols=63 Identities=10% Similarity=0.060 Sum_probs=36.9
Q ss_pred hcCCCcEEEEEEEc-CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhh---CCCcceEEEEeCCc
Q 025234 133 NDAKVTVETMLVES-KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKN---APDYCEVTIVHDGK 205 (256)
Q Consensus 133 ~~~gv~v~~~lv~g-~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~---a~~~cPVLVV~~~~ 205 (256)
...+++++....+. +. +.++.+.+.+.+.|.||+.. |.+.+ ..+...++.+ .+ +|+-++|-|.
T Consensus 24 ~~~g~~~~v~~t~~~~~-a~~~a~~~~~~~~d~vv~~G-GDGTi------~ev~ngl~~~~~~~~--~~lgiiP~GT 90 (293)
T TIGR03702 24 RDEGIQLHVRVTWEKGD-AQRYVAEALALGVSTVIAGG-GDGTL------REVATALAQIRDDAA--PALGLLPLGT 90 (293)
T ss_pred HHCCCeEEEEEecCCCC-HHHHHHHHHHcCCCEEEEEc-CChHH------HHHHHHHHhhCCCCC--CcEEEEcCCc
Confidence 44577766554443 44 67788777667788766443 33332 2344455532 34 6899999764
No 129
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=28.23 E-value=3.6e+02 Score=22.67 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=21.4
Q ss_pred eEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 54 ~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
|++|+..|.. .-|+.+|.+ .|.++..|++..+.
T Consensus 1 kv~v~~SGGkDS~~al~~a~~----~G~~v~~l~~~~~~ 35 (194)
T cd01994 1 KVVALISGGKDSCYALYRALE----EGHEVVALLNLTPE 35 (194)
T ss_pred CEEEEecCCHHHHHHHHHHHH----cCCEEEEEEEEecC
Confidence 4677777766 555555554 47778877766543
No 130
>PRK08185 hypothetical protein; Provisional
Probab=28.19 E-value=1.3e+02 Score=27.30 Aligned_cols=52 Identities=10% Similarity=-0.031 Sum_probs=37.5
Q ss_pred CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 147 KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 147 ~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
.....++++.|++.+.-.|+..+.+.-......+ ......+.+++. +||.+=
T Consensus 23 ~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~-~~~~~~~a~~~~--vPV~lH 74 (283)
T PRK08185 23 SCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNF-FAYVRERAKRSP--VPFVIH 74 (283)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHH-HHHHHHHHHHCC--CCEEEE
Confidence 3447999999999999999999887532111111 466677888999 997654
No 131
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.72 E-value=3.6e+02 Score=24.73 Aligned_cols=60 Identities=7% Similarity=0.098 Sum_probs=34.8
Q ss_pred hcCCCcEEEE-EEEcCCh---HHHHHHHhhhcCCCEEE-EcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 133 NDAKVTVETM-LVESKAT---AKAILDLISVANVTSLV-MGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 133 ~~~gv~v~~~-lv~g~~v---~eaIl~~a~e~~aDLIV-mGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
...++.+... .+.+.+. .+.+.+.+++.++|.|| +|.-. . -.++..+.-... +|++.||.
T Consensus 46 ~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs-------~--~D~aK~ia~~~~--~p~i~VPT 110 (345)
T cd08171 46 EQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGK-------A--IDTVKVLADKLG--KPVFTFPT 110 (345)
T ss_pred HHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcH-------H--HHHHHHHHHHcC--CCEEEecC
Confidence 3356655422 2334333 34566777788999988 66311 1 144444444457 89999997
No 132
>TIGR00032 argG argininosuccinate synthase. argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.
Probab=27.30 E-value=5.5e+02 Score=24.41 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=20.9
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 149 TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
..+.+.+.|++.+++.|+-|+.+.
T Consensus 94 i~~~l~~~A~~~G~~~Ia~G~t~~ 117 (394)
T TIGR00032 94 IAKKLVEAAKKEGANAVAHGCTGK 117 (394)
T ss_pred HHHHHHHHHHHcCCCEEEECccCC
Confidence 467789999999999999999764
No 133
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=26.99 E-value=70 Score=26.09 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=20.4
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCC-----CcceEEEEeCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAP-----DYCEVTIVHDG 204 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~-----~~cPVLVV~~~ 204 (256)
.+.|.+++.++++|+|++|..+.... ++. -.+. .++.... +.+||.+|.+.
T Consensus 52 ~~~l~~~i~~~kP~vI~v~g~~~~s~-~l~--~~v~-~~v~~~~~~~~~~~i~V~~v~~~ 107 (150)
T PF14639_consen 52 MERLKKFIEKHKPDVIAVGGNSRESR-KLY--DDVR-DIVEELDEDEQMPPIPVVIVDDE 107 (150)
T ss_dssp HHHHHHHHHHH--SEEEE--SSTHHH-HHH--HHHH-HHHHHTTB-TTS-B--EEE---T
T ss_pred HHHHHHHHHHcCCeEEEEcCCChhHH-HHH--HHHH-HHHHHhhhcccCCCceEEEECcH
Confidence 35566777778888888865443221 111 1222 2332211 23899888763
No 134
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=26.76 E-value=1.6e+02 Score=27.55 Aligned_cols=75 Identities=8% Similarity=0.026 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCc------cch-----hhc----cCChH
Q 025234 121 RRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPR------SRL-----FTK----KLSKG 185 (256)
Q Consensus 121 a~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~------~~~-----~~l----~GSva 185 (256)
.+++|..+. +.+..+=.--+.......+|++.|++.+..+|+..+.+... +.. +.. +....
T Consensus 9 ~k~~L~~A~----~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v 84 (350)
T PRK09197 9 YQEMFDRAK----ENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHV 84 (350)
T ss_pred HHHHHHHHH----HCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHH
Confidence 344554433 33443333333344458999999999999999988776321 111 000 13456
Q ss_pred HHHHhhCCCcceEEEE
Q 025234 186 EFVKKNAPDYCEVTIV 201 (256)
Q Consensus 186 ~~Vl~~a~~~cPVLVV 201 (256)
..+.++++ +||.+=
T Consensus 85 ~~~A~~~~--VPValH 98 (350)
T PRK09197 85 HEVAEHYG--VPVILH 98 (350)
T ss_pred HHHHHHCC--CCEEEE
Confidence 67888999 997654
No 135
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=26.67 E-value=4.8e+02 Score=23.51 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=58.4
Q ss_pred chhhhhhcccccCCccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccC
Q 025234 29 SPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLN 106 (256)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~ 106 (256)
...+.+++++.+-.+.... .....||.|-+.++. ..||-.+... ...+++|.+|-.-.+.
T Consensus 67 ~~~L~~l~~~l~l~i~l~~-~~~~~ri~vl~Sg~gsnl~al~~~~~~-~~~~~~i~~visn~~~---------------- 128 (286)
T PRK06027 67 RADFAALAEEFEMDWRLLD-SAERKRVVILVSKEDHCLGDLLWRWRS-GELPVEIAAVISNHDD---------------- 128 (286)
T ss_pred HHHHHHHHHHhCCEEEEcc-cccCcEEEEEEcCCCCCHHHHHHHHHc-CCCCcEEEEEEEcChh----------------
Confidence 4445666666553332222 224567888887777 6666666433 2235666555432211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEE---EcCChHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 107 QEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLV---ESKATAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 107 ~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv---~g~~v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
+.. .+.+.|+++...-. .-.....++.+..++.++|+||+..-.+
T Consensus 129 --------------~~~-------lA~~~gIp~~~~~~~~~~~~~~~~~~~~~l~~~~~Dlivlagy~~ 176 (286)
T PRK06027 129 --------------LRS-------LVERFGIPFHHVPVTKETKAEAEARLLELIDEYQPDLVVLARYMQ 176 (286)
T ss_pred --------------HHH-------HHHHhCCCEEEeccCccccchhHHHHHHHHHHhCCCEEEEecchh
Confidence 011 13345777654211 1122245788989999999999987654
No 136
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=26.66 E-value=3.9e+02 Score=24.53 Aligned_cols=86 Identities=10% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEcCCh--HHHHHHHhhhcC-----------------CCEEEEcCcCCCccchhh--cc
Q 025234 123 NLLQKYIRLCNDAKVTVETMLVESKAT--AKAILDLISVAN-----------------VTSLVMGTKLSPRSRLFT--KK 181 (256)
Q Consensus 123 ~~L~~~~~~~~~~gv~v~~~lv~g~~v--~eaIl~~a~e~~-----------------aDLIVmGs~~~~~~~~~~--l~ 181 (256)
+.+.++...+...+.++...+.++.|- +....+.-++.+ +|.+++|+++-....-+. .|
T Consensus 130 ~~v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~gI~~~~I~Dsa~~~~~~~vd~VivGad~I~~nG~lvnkiG 209 (301)
T COG1184 130 KTVLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQSGIPVTVIVDSAVGAFMSRVDKVLVGADAILANGALVNKIG 209 (301)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHcCCceEEEechHHHHHHHhCCEEEECccceecCCcEEeccc
Q ss_pred CChHHHHHhhCCCcceEEEEeCCcccccc
Q 025234 182 LSKGEFVKKNAPDYCEVTIVHDGKKVVDG 210 (256)
Q Consensus 182 GSva~~Vl~~a~~~cPVLVV~~~~~~~~~ 210 (256)
-+.-.-+.+++. .||+++..-.+....
T Consensus 210 T~~lA~~A~e~~--~Pf~v~aesyKf~p~ 236 (301)
T COG1184 210 TSPLALAARELR--VPFYVVAESYKFVPK 236 (301)
T ss_pred hHHHHHHHHHhC--CCEEEEeeeeccccc
No 137
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=26.56 E-value=3.2e+02 Score=21.54 Aligned_cols=63 Identities=13% Similarity=0.034 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhC
Q 025234 122 RNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNA 192 (256)
Q Consensus 122 ~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a 192 (256)
.+++..+.+ ..|+++...-. ....+++++.|.+.++|.|+|.+........ + ..+.+.+-...
T Consensus 19 ~~iv~~~l~---~~GfeVi~lg~--~~s~e~~v~aa~e~~adii~iSsl~~~~~~~-~--~~~~~~L~~~g 81 (132)
T TIGR00640 19 AKVIATAYA---DLGFDVDVGPL--FQTPEEIARQAVEADVHVVGVSSLAGGHLTL-V--PALRKELDKLG 81 (132)
T ss_pred HHHHHHHHH---hCCcEEEECCC--CCCHHHHHHHHHHcCCCEEEEcCchhhhHHH-H--HHHHHHHHhcC
Confidence 345444443 35777644332 3346899999999999999998866433221 2 35555554433
No 138
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.54 E-value=3.9e+02 Score=22.52 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=20.6
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCCCc
Q 025234 150 AKAILDLISVANVTSLVMGTKLSPR 174 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~~~ 174 (256)
..+|.+++++.++|+|++|+...+.
T Consensus 97 a~al~~~i~~~~p~lVL~~~t~~~~ 121 (202)
T cd01714 97 AKALAAAIKKIGVDLILTGKQSIDG 121 (202)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccC
Confidence 5678888888899999999987643
No 139
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=26.35 E-value=3.3e+02 Score=25.22 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=36.2
Q ss_pred HHhhcCCCcEEEEEEEcCCh---HHHHHHHhhhcCCCEEE-EcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 130 RLCNDAKVTVETMLVESKAT---AKAILDLISVANVTSLV-MGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v---~eaIl~~a~e~~aDLIV-mGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+.+...++.+....+.+.+. .+.+.+.+++.++|.|| +|. .+. ..++..+.-... .|++.||.
T Consensus 50 ~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG--Gsv-------~D~aK~iA~~~~--~p~i~IPT 116 (366)
T PRK09423 50 ASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG--GKT-------LDTAKAVADYLG--VPVVIVPT 116 (366)
T ss_pred HHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC--hHH-------HHHHHHHHHHcC--CCEEEeCC
Confidence 33334566554334455443 34566777788999877 443 111 244444444456 89999997
No 140
>PRK00861 putative lipid kinase; Reviewed
Probab=25.93 E-value=3.7e+02 Score=23.91 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=35.3
Q ss_pred CcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 137 VTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 137 v~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
++++....+...-+.++.+.+...+.|+||+.. |.+.+ .-+...++. .. +|+-++|.|.
T Consensus 33 ~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~G-GDGTl------~evv~~l~~-~~--~~lgviP~GT 91 (300)
T PRK00861 33 MDLDIYLTTPEIGADQLAQEAIERGAELIIASG-GDGTL------SAVAGALIG-TD--IPLGIIPRGT 91 (300)
T ss_pred CceEEEEccCCCCHHHHHHHHHhcCCCEEEEEC-ChHHH------HHHHHHHhc-CC--CcEEEEcCCc
Confidence 455554544433367888777777889877644 33322 233344443 35 8999999764
No 141
>PRK00074 guaA GMP synthase; Reviewed
Probab=25.78 E-value=6.4e+02 Score=24.71 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=24.9
Q ss_pred CCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 51 AASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 51 ~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
+.++|+|++.|.- -.++-+.+..+ .+.++..+|+-..
T Consensus 214 ~~~~vlva~SGGvDS~vll~ll~~~--lg~~v~av~vd~g 251 (511)
T PRK00074 214 GDKKVILGLSGGVDSSVAAVLLHKA--IGDQLTCVFVDHG 251 (511)
T ss_pred CCCcEEEEeCCCccHHHHHHHHHHH--hCCceEEEEEeCC
Confidence 3489999999887 44444444333 2678999999654
No 142
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=25.57 E-value=1.7e+02 Score=27.46 Aligned_cols=64 Identities=9% Similarity=-0.006 Sum_probs=41.1
Q ss_pred CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCcc-chh---------------hccCChHHHHHhhCCCcceE
Q 025234 135 AKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRS-RLF---------------TKKLSKGEFVKKNAPDYCEV 198 (256)
Q Consensus 135 ~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~-~~~---------------~l~GSva~~Vl~~a~~~cPV 198 (256)
.+..+=.--+.......+|++.|++.+...|+.-+.+.... ... . .+.....+.+++. +||
T Consensus 14 ~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~A~~~~--VPV 90 (345)
T cd00946 14 NGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIA-AAHHVRSMAEHYG--VPV 90 (345)
T ss_pred CCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHH-HHHHHHHHHHHCC--CCE
Confidence 34433333333344589999999999999999988863211 100 1 1455567888999 997
Q ss_pred EEE
Q 025234 199 TIV 201 (256)
Q Consensus 199 LVV 201 (256)
.+=
T Consensus 91 alH 93 (345)
T cd00946 91 VLH 93 (345)
T ss_pred EEE
Confidence 654
No 143
>PRK02929 L-arabinose isomerase; Provisional
Probab=25.04 E-value=3.6e+02 Score=26.58 Aligned_cols=45 Identities=9% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcC----CCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 150 AKAILDLISVAN----VTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 150 ~eaIl~~a~e~~----aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.++|.+.+++.+ +|.||+-.+.-+..+.+ -.+++... +|||+...
T Consensus 57 ~~~i~~~~~~~~~~~~~dgvi~~m~TFs~a~~~-------i~~~~~l~--~PvL~~~~ 105 (499)
T PRK02929 57 PDEITAVCREANYDDNCAGVITWMHTFSPAKMW-------IRGLSALQ--KPLLHLHT 105 (499)
T ss_pred HHHHHHHHHHccccCCCcEEEEccCCCchHHHH-------HHHHHHcC--CCEEEEec
Confidence 577777777777 99999998887654432 35578889 99999987
No 144
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=24.58 E-value=2.4e+02 Score=28.23 Aligned_cols=70 Identities=13% Similarity=0.153 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHH---hhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDL---ISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~---a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
.+++....+...|++++..+.......+.+.++ +++.+++.||.++.....+. .-|.-++. +||+-
T Consensus 425 ~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~---------~~~a~~t~--~pvi~ 493 (577)
T PLN02948 425 TMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLP---------GMVASMTP--LPVIG 493 (577)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccch---------HHHhhccC--CCEEE
Confidence 344455555567898887776554434555544 45578888777775443322 23445777 99999
Q ss_pred EeCC
Q 025234 201 VHDG 204 (256)
Q Consensus 201 V~~~ 204 (256)
||..
T Consensus 494 vp~~ 497 (577)
T PLN02948 494 VPVK 497 (577)
T ss_pred cCCC
Confidence 9974
No 145
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=24.52 E-value=2.3e+02 Score=27.37 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=45.2
Q ss_pred CCcEEEEEEEcCCh--------HHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 136 KVTVETMLVESKAT--------AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 136 gv~v~~~lv~g~~v--------~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+.++...++-|+.- .+.|++.+++.++|++|.|--=.-+.-... -|.++..|-++.. ||++..
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~a-cg~va~aV~e~~~--IP~vta 113 (431)
T TIGR01917 43 DAEIVATVVCGDSFFGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMA-AGAITKAVQDELG--IKAFTA 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHH-HHHHHHHHHHhhC--CCeEEE
Confidence 45666666666432 467999999999999999987542222222 3789999999999 998754
No 146
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=24.51 E-value=4.8e+02 Score=22.80 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=22.1
Q ss_pred cCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCc
Q 025234 134 DAKVTVETMLVESKATAKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 134 ~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~ 170 (256)
..+..+.. .+.|+ +...-+..+.+.++|.+|+|+.
T Consensus 165 ~~~~~~~I-eVDGG-I~~~~i~~~~~aGad~~V~Gss 199 (229)
T PRK09722 165 RNGLEYLI-EVDGS-CNQKTYEKLMEAGADVFIVGTS 199 (229)
T ss_pred hcCCCeEE-EEECC-CCHHHHHHHHHcCCCEEEEChH
Confidence 34555444 34554 3455555555689999999974
No 147
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=24.42 E-value=6.9e+02 Score=24.59 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=58.1
Q ss_pred CCCCeEEEEecCCH--------HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--------LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRR 121 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--------~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a 121 (256)
...++|+|++|--+ ..|++.-+..-.....+++++-+..+... .+.+| +..+.+.
T Consensus 279 ~~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~----------------~v~~y-~~~~~~i 341 (486)
T COG0380 279 GRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSRE----------------DVEEY-QALRLQI 341 (486)
T ss_pred cCCceEEEEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCcc----------------ccHHH-HHHHHHH
Confidence 55699999999655 55666665554456788999998887531 12233 3334444
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 122 RNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 122 ~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
++...+.-..+...+......+-..-+ .+.++.+=. .+|..++-.-..
T Consensus 342 ~~~V~rIN~~fG~~~~~Pv~~l~~~~~-~~~l~al~~--~aDv~lVtplrD 389 (486)
T COG0380 342 EELVGRINGEFGSLSWTPVHYLHRDLD-RNELLALYR--AADVMLVTPLRD 389 (486)
T ss_pred HHHHHHHHhhcCCCCcceeEEEeccCC-HHHHHHHHh--hhceeeeccccc
Confidence 445555444444334433333444333 455555543 456666655443
No 148
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=24.19 E-value=1e+02 Score=27.55 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=31.8
Q ss_pred CCCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEe
Q 025234 49 DAAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVF 87 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~ 87 (256)
....++++|++++|. ...+..++..|+..|++++++.-.
T Consensus 174 ~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~ 213 (281)
T COG1737 174 LLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDS 213 (281)
T ss_pred hCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCC
Confidence 456788999999999 666666778999999999888544
No 149
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=24.15 E-value=3e+02 Score=21.12 Aligned_cols=59 Identities=8% Similarity=0.121 Sum_probs=37.4
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 130 RLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+.+..+|.++...-. + ..++-+++. ++|.+.+|..-+ |+. ...+.++.... +||-+|+.
T Consensus 23 ~aA~~kg~~~~I~A~---s-~~e~~~~~~--~~DvvLlGPQv~------y~~-~~~~~~~~~~g--iPV~vI~~ 81 (102)
T COG1440 23 KAAESKGKDVTIEAY---S-ETELSEYID--NADVVLLGPQVR------YML-KQLKEAAEEKG--IPVEVIDM 81 (102)
T ss_pred HHHHhCCCceEEEEe---c-hhHHHHhhh--cCCEEEEChHHH------HHH-HHHHHHhcccC--CCeEEeCH
Confidence 334446777654333 3 455566665 899999998542 222 44566777776 89999975
No 150
>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]
Probab=24.12 E-value=4.9e+02 Score=24.76 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=21.8
Q ss_pred CeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 53 ~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
.++|+=+.|.= --. |.-++.++|.++..||...++
T Consensus 176 Gk~l~LlSGGIDSPV---A~~l~mkRG~~v~~v~f~~~p 211 (383)
T COG0301 176 GKVLLLLSGGIDSPV---AAWLMMKRGVEVIPVHFGNPP 211 (383)
T ss_pred CcEEEEEeCCCChHH---HHHHHHhcCCEEEEEEEcCCC
Confidence 45555555433 222 334556689999999997654
No 151
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=24.06 E-value=2.1e+02 Score=26.17 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=30.9
Q ss_pred hhcCCCEEEEcCcCCCccchhh-ccCChHHHHH-hhCCCcceEEEEeCCcccccc
Q 025234 158 SVANVTSLVMGTKLSPRSRLFT-KKLSKGEFVK-KNAPDYCEVTIVHDGKKVVDG 210 (256)
Q Consensus 158 ~e~~aDLIVmGs~~~~~~~~~~-l~GSva~~Vl-~~a~~~cPVLVV~~~~~~~~~ 210 (256)
+..++|++++|+..-....... ..|+-.-.++ +... +||+|+.+-......
T Consensus 194 ~~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak~~~--vPv~V~a~s~K~~~~ 246 (303)
T TIGR00524 194 QKGEIDAVIVGADRIARNGDVANKIGTYQLAVLAKEFR--IPFFVAAPLSTFDTK 246 (303)
T ss_pred cccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHHHhC--CCEEEecccccccCC
Confidence 3457999999999742211111 1255444444 6667 999999775544433
No 152
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=23.80 E-value=1.4e+02 Score=23.12 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=27.0
Q ss_pred CCCEEEEcCcCCCccchhhc--cCChHHHHHhhC---CCcceEEEEeC
Q 025234 161 NVTSLVMGTKLSPRSRLFTK--KLSKGEFVKKNA---PDYCEVTIVHD 203 (256)
Q Consensus 161 ~aDLIVmGs~~~~~~~~~~l--~GSva~~Vl~~a---~~~cPVLVV~~ 203 (256)
.+|++|+..-..+.+.++-. ..+....++..+ . .||+++|.
T Consensus 73 ~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~--~pvvi~P~ 118 (129)
T PF02441_consen 73 WADAMVVAPATANTLAKIANGIADNLLTRVALAALKEG--KPVVIAPA 118 (129)
T ss_dssp TESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTT--CGEEEEEE
T ss_pred cCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCC--CCeEEEEe
Confidence 58999998876554443321 135556666666 7 89999986
No 153
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=23.64 E-value=57 Score=29.57 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 122 RNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 122 ~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
+++|+.+.+ .+..+=..-+.......++++.|++.+..+|+.-+.+.......-..+.....+.++++ +||.+
T Consensus 6 ~~ll~~A~~----~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~--vPVal 78 (287)
T PF01116_consen 6 KELLKKAKE----GGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEEAS--VPVAL 78 (287)
T ss_dssp HHHHHHHHH----HT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHHST--SEEEE
T ss_pred HHHHHHHHH----CCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHHcC--CCEEe
Confidence 445555443 24333333333444589999999999999999888764322211112577888999999 99965
No 154
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=23.52 E-value=73 Score=25.41 Aligned_cols=55 Identities=18% Similarity=0.166 Sum_probs=38.4
Q ss_pred CChHHHHHHHhhhcCCCEEEEcCcCCC-----ccchhhccCChHHHHHhhC-CCcceEEEEeCCc
Q 025234 147 KATAKAILDLISVANVTSLVMGTKLSP-----RSRLFTKKLSKGEFVKKNA-PDYCEVTIVHDGK 205 (256)
Q Consensus 147 ~~v~eaIl~~a~e~~aDLIVmGs~~~~-----~~~~~~l~GSva~~Vl~~a-~~~cPVLVV~~~~ 205 (256)
....+.|.+++++++++.||+|---.. ...... -..++.+.... . +||..+-+..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v--~~f~~~L~~~~~~--ipV~~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRV--RKFAEELKKRFPG--IPVILVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHH--HHHHHHHHHHH-T--SEEEEEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHH--HHHHHHHHHhcCC--CcEEEECCCh
Confidence 355899999999999999999986421 111111 23446666776 6 9999998743
No 155
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=23.45 E-value=3.4e+02 Score=24.06 Aligned_cols=64 Identities=6% Similarity=0.003 Sum_probs=36.5
Q ss_pred hhcCCCcEEEEEEEcCChHHHH-HHHhhhcCCCEEEEcCcCCCccchhhccCChHHH--HHhhCCCcceEEEEeCCc
Q 025234 132 CNDAKVTVETMLVESKATAKAI-LDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEF--VKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaI-l~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~--Vl~~a~~~cPVLVV~~~~ 205 (256)
|...|++.+..+.--++...++ ..+.+++++|.||.=-.|.. |.+.++ ..+... +||++|.+..
T Consensus 167 ~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~--------Gg~~eKi~AA~~lg--i~vivI~RP~ 233 (256)
T TIGR00715 167 ALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQ--------GGELEKVKAAEALG--INVIRIARPQ 233 (256)
T ss_pred HHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCc--------cchHHHHHHHHHcC--CcEEEEeCCC
Confidence 3444554443333222333333 35667899999997655542 223333 445667 9999998754
No 156
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=23.40 E-value=1.9e+02 Score=26.48 Aligned_cols=62 Identities=10% Similarity=0.081 Sum_probs=39.6
Q ss_pred CcEEEEEEEcC--ChHHHHHHHhhhcCCCEEEEcCcCC--CccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 137 VTVETMLVESK--ATAKAILDLISVANVTSLVMGTKLS--PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 137 v~v~~~lv~g~--~v~eaIl~~a~e~~aDLIVmGs~~~--~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
-+++.+.+.+. .+..+.++.++ ++|+||+|-... +-.-. ++...+.+.| ++++ ||++.|.+-
T Consensus 151 ~~I~~v~l~~~~~~~~~~a~~AI~--~AD~Iv~gPGSlyTSI~P~-Llv~gI~eAi-~~s~--a~kV~v~N~ 216 (308)
T cd07187 151 SPIKRVFLEPPDPKANPEALEAIE--EADLIVYGPGSLYTSILPN-LLVKGIAEAI-RASK--APKVYICNL 216 (308)
T ss_pred CCceEEEEECCCCCCCHHHHHHHH--hCCEEEECCCccHHHhhhh-cCchhHHHHH-HhCC--CCEEEEecC
Confidence 34555555543 44567777775 789999999774 22222 2335666655 6778 898888763
No 157
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=23.08 E-value=1.4e+02 Score=21.09 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=19.2
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEE
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYL 83 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~L 83 (256)
.++|+++.|.+. +.+..+..+.+...+-+++.
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~gi~v~~ 79 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPLGIRVTR 79 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--------
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhhcccccc
Confidence 699999999999 77777777766655655543
No 158
>PRK13057 putative lipid kinase; Reviewed
Probab=23.00 E-value=2.7e+02 Score=24.67 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=36.2
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
..+.+...++++.....+...-+..+++.+ ..++|+||+..- .+.+ ..+...++. .. +|+.++|.|.
T Consensus 18 i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~-~~~~d~iiv~GG-DGTv------~~v~~~l~~-~~--~~lgiiP~GT 84 (287)
T PRK13057 18 ARAALEAAGLELVEPPAEDPDDLSEVIEAY-ADGVDLVIVGGG-DGTL------NAAAPALVE-TG--LPLGILPLGT 84 (287)
T ss_pred HHHHHHHcCCeEEEEecCCHHHHHHHHHHH-HcCCCEEEEECc-hHHH------HHHHHHHhc-CC--CcEEEECCCC
Confidence 334444567776655544222234555543 356787776542 2222 344455543 46 8999999764
No 159
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=22.88 E-value=1.5e+02 Score=20.49 Aligned_cols=36 Identities=22% Similarity=0.199 Sum_probs=27.0
Q ss_pred CCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEE
Q 025234 50 AAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 50 ~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLH 85 (256)
...+.+++.++.+. ...+.-+++.++..|+++..+-
T Consensus 45 ~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 45 LRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEEe
Confidence 34678999999998 4445557788888888877664
No 160
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=22.81 E-value=2.1e+02 Score=26.81 Aligned_cols=53 Identities=4% Similarity=-0.073 Sum_probs=36.3
Q ss_pred cCChHHHHHHHhhhcCCCEEEEcCcCCCccch-hhccCChHHHHHhhC-CCcceEEEE
Q 025234 146 SKATAKAILDLISVANVTSLVMGTKLSPRSRL-FTKKLSKGEFVKKNA-PDYCEVTIV 201 (256)
Q Consensus 146 g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~-~~l~GSva~~Vl~~a-~~~cPVLVV 201 (256)
......+|++.|++.+.-+|+..+.+...... -+ .......+.+++ . +||.+=
T Consensus 27 n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~-~~~~v~~~ae~~~~--VPVaLH 81 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVILQASRGARKYAGDAM-LRHMVLAAAEMYPD--IPICLH 81 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHH-HHHHHHHHHHhcCC--CcEEEE
Confidence 33458999999999999999999886432111 11 145666777777 5 887653
No 161
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=22.54 E-value=5.5e+02 Score=24.97 Aligned_cols=80 Identities=6% Similarity=-0.009 Sum_probs=58.1
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+..|.+.++..|+++.....+.++....|-++.+....|-|++-.-+..++...+ ..+.-..+ |++.+|..
T Consensus 54 AMR~Fad~LraeG~~V~Y~~~~~~~~~~~l~~~l~~~~~d~~~~~~p~~~~l~~~m------~~L~~~~g--~~i~~~~~ 125 (505)
T COG3046 54 AMRHFADELRAEGLKVRYERADDNSFGGELRRALEAYPGDRVQVQEPGDHRLEARM------KSLSMALG--IEITEVEN 125 (505)
T ss_pred HHHHHHHHHhhCCceeEEEEcCCcccchHHHHHHHhcCCCeEEEecCcchhHHHHH------HhhhhhcC--ceeEEecC
Confidence 46677777888899999888877677888999999999999998887764443322 23444567 99999987
Q ss_pred Ccccccch
Q 025234 204 GKKVVDGQ 211 (256)
Q Consensus 204 ~~~~~~~~ 211 (256)
..-...+.
T Consensus 126 ~~Fl~s~a 133 (505)
T COG3046 126 PHFLCSRA 133 (505)
T ss_pred cceecCHH
Confidence 65444433
No 162
>cd01998 tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.
Probab=22.46 E-value=6.2e+02 Score=23.36 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.7
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
...+.++|.+.++|.|+.|++.+
T Consensus 102 f~~l~~~A~~~g~~~IatGHya~ 124 (349)
T cd01998 102 FGALLDYAKKLGADYIATGHYAR 124 (349)
T ss_pred HHHHHHHHHHcCcCEEEECCcCC
Confidence 45677889999999999999865
No 163
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=22.46 E-value=7.4e+02 Score=24.25 Aligned_cols=103 Identities=9% Similarity=0.011 Sum_probs=54.8
Q ss_pred CCCeEEEEecCCH--------HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--------LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRR 122 (256)
Q Consensus 51 ~~~~ILVaVD~S~--------~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~ 122 (256)
+.++|+++||--+ ..|++.-++.--....+++|+.|..+... .+.+| ++.+.+.+
T Consensus 253 ~~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~~gkvvlvQia~psR~----------------~v~~Y-~~l~~~v~ 315 (474)
T PRK10117 253 KNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRG----------------DVQAY-QDIRHQLE 315 (474)
T ss_pred CCCeEEEEecccccccCHHHHHHHHHHHHHhChhhcCCEEEEEEcCCCCC----------------ccHHH-HHHHHHHH
Confidence 3588999999655 45666565555456788999999876421 11122 22333444
Q ss_pred HHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 123 NLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 123 ~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
++..+.-......+......+-.+-+ .++++.+=+ -+|..++-.-..|
T Consensus 316 ~~vg~INg~fg~~~w~Pv~y~~~~~~-~~~l~alyr--~ADv~lVTplRDG 363 (474)
T PRK10117 316 TEAGRINGKYGQLGWTPLYYLNQHFD-RKLLMKIFR--YSDVGLVTPLRDG 363 (474)
T ss_pred HHHHHHHhccCCCCceeEEEecCCCC-HHHHHHHHH--hccEEEecccccc
Confidence 44444444333333222222223333 566665443 4577777665544
No 164
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=22.43 E-value=2.4e+02 Score=25.60 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=28.8
Q ss_pred CCCEEEEcCcCCCccchhh-ccCChHHHH-HhhCCCcceEEEEeCCcccccc
Q 025234 161 NVTSLVMGTKLSPRSRLFT-KKLSKGEFV-KKNAPDYCEVTIVHDGKKVVDG 210 (256)
Q Consensus 161 ~aDLIVmGs~~~~~~~~~~-l~GSva~~V-l~~a~~~cPVLVV~~~~~~~~~ 210 (256)
++|.+++|+.+-......+ ..|+-.-.+ .++.. +||+|+.+-......
T Consensus 183 ~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~~~--vPv~V~a~~~K~~~~ 232 (301)
T TIGR00511 183 EVDHVVVGADAITANGALINKIGTSQLALAAREAR--VPFMVAAETYKFHPK 232 (301)
T ss_pred hCCEEEECccEEecCCCEEEHHhHHHHHHHHHHhC--CCEEEEcccceecCC
Confidence 4899999999742211111 125444444 46667 999999775544443
No 165
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=22.38 E-value=1.8e+02 Score=24.33 Aligned_cols=32 Identities=9% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEE
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLV 84 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LL 84 (256)
+++|+++|-||. ..+.++.-.+ +..+.+|.++
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L-~~~g~~V~vv 34 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQL-TKRGYQVTVL 34 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHH-HHCCCEEEEE
Confidence 479999999998 6666666544 4457776644
No 166
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=22.32 E-value=76 Score=31.63 Aligned_cols=21 Identities=19% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHhhhcCCCEEEEcCc
Q 025234 150 AKAILDLISVANVTSLVMGTK 170 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~ 170 (256)
.++|+++|++.++|+|++|.-
T Consensus 41 FeEIl~iA~e~~VDmiLlGGD 61 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGD 61 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCc
Confidence 699999999999999999974
No 167
>KOG3217 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=21.90 E-value=85 Score=25.83 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=38.3
Q ss_pred CccccCcCCCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecCCC
Q 025234 42 SIGAASRDAAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSPVT 91 (256)
Q Consensus 42 ~~~~~~~~~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~~~ 91 (256)
..+.+..+...-..+++.|.+. ++.++||...-....++|.|+-+++...
T Consensus 75 aRqit~~DF~~FDYI~~MDesN~~dL~~~a~~~~~~~kakV~Llgsy~~~~ 125 (159)
T KOG3217|consen 75 ARQITTSDFREFDYILAMDESNLRDLLRKASNQPKGSKAKVLLLGSYDKNG 125 (159)
T ss_pred cccccHhHhhhcceeEEecHHHHHHHHHHhccCCCCcceEEEEeeccCCCC
Confidence 3344555556667889999999 9999999655555678999999998753
No 168
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=21.87 E-value=4.7e+02 Score=23.31 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=35.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 125 LQKYIRLCNDAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
+-.+..+|+.+|..+..+--.| ...+++|++.+...+..|++||-.+.-
T Consensus 92 iGAL~a~~~a~G~~~~hVKpHGALYN~~a~D~~la~av~~av~~~dp~L~l~~Lags~ 149 (252)
T COG1540 92 IGALQAFARAQGGVVQHVKPHGALYNQAAKDRALADAVAEAVAAFDPSLILMGLAGSE 149 (252)
T ss_pred HHHHHHHHHhcCCeEEEecccHHHHHHhhcCHHHHHHHHHHHHHhCCCceEEecCcHH
Confidence 3445556667787766554333 334789999999999999999988763
No 169
>COG0415 PhrB Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]
Probab=21.86 E-value=7.5e+02 Score=24.15 Aligned_cols=84 Identities=12% Similarity=0.094 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||.+|+.... ..+.+|.+.++.... ..+ + ....-..+-|+.+.+.+...|++. .+
T Consensus 17 N~aL~~A~~~~~---~~~~~vfi~~~~~~~--~~~--------~--------~~~~Fl~~sL~~L~~~L~~~gi~L--~v 73 (461)
T COG0415 17 NAALAAACQSGQ---PVIIAVFILDPEQLG--HAS--------P--------RHAAFLLQSLQALQQSLAELGIPL--LV 73 (461)
T ss_pred hHHHHHHHhcCC---CceEEEEEechhhcc--ccC--------H--------HHHHHHHHHHHHHHHHHHHcCCce--EE
Confidence 556777765442 234677888775321 111 1 111222334555555555567654 45
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
..|+ +...|.+++++.+++-|+-...-
T Consensus 74 ~~~~-~~~~l~~~~~~~~~~~v~~n~~~ 100 (461)
T COG0415 74 REGD-PEQVLPELAKQLAATTVFWNRDY 100 (461)
T ss_pred EeCC-HHHHHHHHHHHhCcceEEeeeee
Confidence 5665 48999999999998887776654
No 170
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=21.86 E-value=2.2e+02 Score=25.88 Aligned_cols=57 Identities=12% Similarity=-0.030 Sum_probs=36.7
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCcc-c-hhhccCChHHHHHhhCCCcceEEEE
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRS-R-LFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~-~-~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+.......++++.|++.+...|+.-+.+.-.. . ... .......+.+++.-++||.+=
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~~~~-~~~~~~~~a~~~~~~vPV~lH 83 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGGYKV-CKNLIENLVESMGITVPVAIH 83 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHH-HHHHHHHHHHHcCCCCcEEEE
Confidence 33444589999999999999999987764211 1 011 145566788888311687653
No 171
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=21.83 E-value=1.4e+02 Score=27.73 Aligned_cols=24 Identities=13% Similarity=0.475 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEEc
Q 025234 121 RRNLLQKYIRLCNDAKVTVETMLVES 146 (256)
Q Consensus 121 a~~~L~~~~~~~~~~gv~v~~~lv~g 146 (256)
..+.+.+..+.+.+..+ +.+++.|
T Consensus 25 ~~~~f~~~l~~a~~~~v--D~vliAG 48 (390)
T COG0420 25 QKKAFDELLEIAKEEKV--DFVLIAG 48 (390)
T ss_pred HHHHHHHHHHHHHHccC--CEEEEcc
Confidence 34455556666554444 5556555
No 172
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=21.82 E-value=2.6e+02 Score=19.95 Aligned_cols=53 Identities=21% Similarity=0.202 Sum_probs=32.0
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCCC--ccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 149 TAKAILDLISVANVTSLVMGTKLSP--RSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~~--~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
..+.|.+.+++.+++.|++|.-+.- .....+. -...+.+-++.. +||.++.+.
T Consensus 39 ~~~~l~~~i~~~~~~~i~Ig~pg~v~g~~~~~~~-~~l~~~l~~~~~--~pv~~~nDa 93 (99)
T smart00732 39 DAARLKKLIKKYQPDLIVIGLPLNMNGTASRETE-EAFAELLKERFN--LPVVLVDER 93 (99)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcCCCCCcCHHHH-HHHHHHHHHhhC--CcEEEEeCC
Confidence 4566777777778888888866531 1110111 133344555667 999999874
No 173
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.52 E-value=1.4e+02 Score=28.80 Aligned_cols=63 Identities=8% Similarity=0.062 Sum_probs=44.9
Q ss_pred CCcEEEEEEEcCCh--------HHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 136 KVTVETMLVESKAT--------AKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 136 gv~v~~~lv~g~~v--------~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+.++...++-|+.- .+.|++.+++.++|++|.|--=.-+.-... -|.++..|-++.. ||++..
T Consensus 43 ~~eVvaTiiCGDnYf~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~a-cg~va~aV~e~~~--IP~vt~ 113 (431)
T TIGR01918 43 DAEVVHTVVCGDSFFGENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVA-CGEICKVVQDKLN--VPAVTS 113 (431)
T ss_pred CCEEEEEEEECchhhhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHH-HHHHHHHHHHhhC--CCeEEE
Confidence 45566666666432 467999999999999999987542222222 3788998999888 998744
No 174
>PRK04527 argininosuccinate synthase; Provisional
Probab=21.52 E-value=7.2e+02 Score=23.76 Aligned_cols=24 Identities=13% Similarity=0.011 Sum_probs=21.2
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 149 TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
..+.+++.|++.++|.|+-|+.+.
T Consensus 97 ~~~~l~e~A~~~G~~~IA~G~tgk 120 (400)
T PRK04527 97 IVDAALKRAEELGTRIIAHGCTGM 120 (400)
T ss_pred HHHHHHHHHHHCCCCEEEecCcCC
Confidence 367899999999999999999855
No 175
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=21.36 E-value=1.7e+02 Score=23.69 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCC
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPV 90 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~ 90 (256)
.+||+.|+......+.++.++.++...
T Consensus 5 A~Al~eal~~~~~~~~~v~v~D~~~~~ 31 (169)
T PF06925_consen 5 ARALAEALERRRGPDAEVEVVDFLEEA 31 (169)
T ss_pred HHHHHHHHHhhcCCCCEEEEEehHHhh
Confidence 467777776655568899888888753
No 176
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=21.30 E-value=2.8e+02 Score=24.83 Aligned_cols=50 Identities=8% Similarity=0.034 Sum_probs=36.3
Q ss_pred HHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCccc
Q 025234 151 KAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKV 207 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~~ 207 (256)
+......+++++|++|+.+-.... .+-+.+..++..+. +|++||.++.-.
T Consensus 50 ~~~~~~~~~~~pDf~i~isPN~a~-----PGP~~ARE~l~~~~--iP~IvI~D~p~~ 99 (277)
T PRK00994 50 EVVKKMLEEWKPDFVIVISPNPAA-----PGPKKAREILKAAG--IPCIVIGDAPGK 99 (277)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCC-----CCchHHHHHHHhcC--CCEEEEcCCCcc
Confidence 344556678999999998866432 23466778888888 999999875433
No 177
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=20.71 E-value=5e+02 Score=23.61 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCCEEE-EcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 150 AKAILDLISVANVTSLV-MGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIV-mGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+.+.+.+++.++|.|| +|.-. . ..++..+.-... +|++.||.
T Consensus 67 v~~~~~~~~~~~~d~iIaiGGGs-------~--~D~aK~~a~~~~--~p~i~iPT 110 (339)
T cd08173 67 VEKVESSARDIGADFVIGVGGGR-------V--IDVAKVAAYKLG--IPFISVPT 110 (339)
T ss_pred HHHHHHHhhhcCCCEEEEeCCch-------H--HHHHHHHHHhcC--CCEEEecC
Confidence 34566777788999887 66311 1 355555555567 89999997
No 178
>PRK00509 argininosuccinate synthase; Provisional
Probab=20.67 E-value=7.4e+02 Score=23.61 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=22.2
Q ss_pred hHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 149 TAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
+...+++.|++.+++.|+-|+.+++
T Consensus 97 i~~~l~~~A~~~G~~~IA~G~t~kG 121 (399)
T PRK00509 97 IAKKLVEIARKEGADAVAHGCTGKG 121 (399)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCcCC
Confidence 4788999999999999999999854
No 179
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=20.40 E-value=1.7e+02 Score=24.40 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=21.8
Q ss_pred CeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEE
Q 025234 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLV 84 (256)
Q Consensus 53 ~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LL 84 (256)
++|+|++-|+. ..++++. +.+++.+.+|+++
T Consensus 1 k~I~lgvtGs~~a~~~~~ll-~~L~~~g~~V~vi 33 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLT-SQLTKLGYDVTVL 33 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHH-HHHHHCCCEEEEE
Confidence 58999999998 6666554 4445567776644
No 180
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=20.35 E-value=3.1e+02 Score=25.80 Aligned_cols=56 Identities=11% Similarity=0.014 Sum_probs=37.9
Q ss_pred cCChHHHHHHHhhhcCCCEEEEcCcCCCc------cch------hh----ccCChHHHHHhhCCCcceEEEEeC
Q 025234 146 SKATAKAILDLISVANVTSLVMGTKLSPR------SRL------FT----KKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 146 g~~v~eaIl~~a~e~~aDLIVmGs~~~~~------~~~------~~----l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
......++++.|++.+..+|+..+.+.-. ... .+ .+......+.++++ +||.+==+
T Consensus 36 n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~--VPValHLD 107 (357)
T TIGR01520 36 SSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYG--VPVVLHTD 107 (357)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCC--CCEEEECC
Confidence 33458999999999999999998876421 110 00 01346677888999 99876433
No 181
>PRK00766 hypothetical protein; Provisional
Probab=20.07 E-value=2e+02 Score=24.57 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=42.5
Q ss_pred CCcEEEEEEEcCChHHHHHHHhhh----cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 136 KVTVETMLVESKATAKAILDLISV----ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 136 gv~v~~~lv~g~~v~eaIl~~a~e----~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
|+-.....+.|.+..++|++.+.. .++.+|.+..-.-+++.- =..+.|-+... .||++|
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFNv-----vD~~~l~~~tg--~PVI~V 104 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFNV-----VDIEELYRETG--LPVIVV 104 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeEE-----ecHHHHHHHHC--CCEEEE
Confidence 555666778899999999999986 355677776655544331 22367888888 999999
No 182
>PRK10867 signal recognition particle protein; Provisional
Probab=20.01 E-value=7.9e+02 Score=23.65 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=48.8
Q ss_pred EEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025234 55 VYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLC 132 (256)
Q Consensus 55 ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~ 132 (256)
++++.-|+- ..+...|..+....+.++.++-.-... + .+.+.|..+ +
T Consensus 104 ~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R---~-------------------------aa~eQL~~~---a 152 (433)
T PRK10867 104 MMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR---P-------------------------AAIEQLKTL---G 152 (433)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc---h-------------------------HHHHHHHHH---H
Confidence 445555555 778888877665547778777543211 1 011122222 2
Q ss_pred hcCCCcEEEEEEEcCChH---HHHHHHhhhcCCCEEEEcCcCCCcc
Q 025234 133 NDAKVTVETMLVESKATA---KAILDLISVANVTSLVMGTKLSPRS 175 (256)
Q Consensus 133 ~~~gv~v~~~lv~g~~v~---eaIl~~a~e~~aDLIVmGs~~~~~~ 175 (256)
...++++...- .+.++. ...+++++..+.|+|++-+.|+...
T Consensus 153 ~~~gv~v~~~~-~~~dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~ 197 (433)
T PRK10867 153 EQIGVPVFPSG-DGQDPVDIAKAALEEAKENGYDVVIVDTAGRLHI 197 (433)
T ss_pred hhcCCeEEecC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCccc
Confidence 23466654321 122322 2334566677899999999997643
No 183
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=20.00 E-value=1.7e+02 Score=22.89 Aligned_cols=33 Identities=12% Similarity=0.037 Sum_probs=21.7
Q ss_pred EEEEecCCH-------HHHHHHHHHHhcCCCCEEEEEEEe
Q 025234 55 VYVAVGKDD-------LHVLKWALDHAVSPGARIYLVHVF 87 (256)
Q Consensus 55 ILVaVD~S~-------~~AL~~Al~lA~~~~a~l~LLHV~ 87 (256)
|+|++|-|. ...+.....+++..+.+++++..-
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~~~~v~vi~~D 40 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRFPAEVHVIQFD 40 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 578999877 334444455556667888888643
Done!