Query 025234
Match_columns 256
No_of_seqs 221 out of 1137
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 06:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025234.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025234hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 99.9 1.7E-24 5.7E-29 172.2 16.6 141 49-202 2-146 (146)
2 1mjh_A Protein (ATP-binding do 99.9 6.5E-24 2.2E-28 172.1 17.5 147 51-204 4-160 (162)
3 3idf_A USP-like protein; unive 99.9 2.9E-23 9.9E-28 163.7 15.4 134 52-202 1-138 (138)
4 3fg9_A Protein of universal st 99.9 5.1E-23 1.7E-27 166.0 17.0 139 49-202 12-156 (156)
5 2dum_A Hypothetical protein PH 99.9 2.4E-23 8.1E-28 170.2 14.9 151 51-206 4-159 (170)
6 3dlo_A Universal stress protei 99.9 5E-23 1.7E-27 167.3 14.2 131 49-202 21-155 (155)
7 3hgm_A Universal stress protei 99.9 1.1E-23 3.9E-28 167.3 9.8 141 52-201 2-147 (147)
8 1tq8_A Hypothetical protein RV 99.9 4.8E-23 1.7E-27 168.7 13.4 141 49-204 14-159 (163)
9 2gm3_A Unknown protein; AT3G01 99.9 1.8E-22 6.1E-27 165.9 15.3 148 51-205 4-165 (175)
10 3tnj_A Universal stress protei 99.9 9.5E-23 3.2E-27 162.9 13.1 141 50-204 4-148 (150)
11 2z08_A Universal stress protei 99.9 1.3E-22 4.3E-27 160.2 12.0 133 52-202 2-137 (137)
12 3fdx_A Putative filament prote 99.9 1.3E-21 4.3E-26 154.9 12.5 139 52-202 1-143 (143)
13 3olq_A Universal stress protei 99.8 1.7E-20 5.7E-25 167.4 16.0 145 50-204 5-151 (319)
14 1jmv_A USPA, universal stress 99.8 3.9E-21 1.3E-25 152.0 9.5 135 52-204 2-139 (141)
15 3loq_A Universal stress protei 99.8 2.8E-20 9.7E-25 164.7 11.9 149 42-205 12-164 (294)
16 1q77_A Hypothetical protein AQ 99.8 2.3E-19 7.9E-24 141.4 13.3 130 51-202 3-138 (138)
17 3ab8_A Putative uncharacterize 99.8 1.7E-19 5.8E-24 157.3 12.6 145 53-204 1-150 (268)
18 3cis_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 159.2 13.8 140 50-205 17-163 (309)
19 3mt0_A Uncharacterized protein 99.8 3.1E-19 1.1E-23 157.9 11.6 123 50-204 5-129 (290)
20 3mt0_A Uncharacterized protein 99.8 1.3E-18 4.4E-23 153.9 13.5 136 51-205 133-278 (290)
21 3cis_A Uncharacterized protein 99.8 2.8E-18 9.5E-23 153.0 14.4 133 51-203 170-306 (309)
22 3loq_A Universal stress protei 99.8 2.9E-18 9.8E-23 151.7 13.7 123 50-205 168-292 (294)
23 3olq_A Universal stress protei 99.8 1.5E-18 5.1E-23 154.7 11.8 141 51-205 155-307 (319)
24 3ab8_A Putative uncharacterize 99.7 3.3E-16 1.1E-20 136.4 11.5 114 51-202 153-268 (268)
25 2iel_A Hypothetical protein TT 90.5 5.2 0.00018 31.3 13.4 80 117-202 52-134 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 89.1 2.6 9E-05 39.2 10.7 96 51-172 17-130 (464)
27 1wy5_A TILS, hypothetical UPF0 87.0 4.4 0.00015 35.5 10.3 95 51-172 23-136 (317)
28 2xry_A Deoxyribodipyrimidine p 81.9 16 0.00054 34.0 12.1 124 54-207 38-165 (482)
29 2ywx_A Phosphoribosylaminoimid 79.7 13 0.00045 29.6 9.1 68 127-205 17-84 (157)
30 1o97_C Electron transferring f 76.2 3.6 0.00012 35.5 5.3 100 58-199 32-143 (264)
31 1efv_B Electron transfer flavo 75.7 6.8 0.00023 33.6 6.9 94 64-199 43-147 (255)
32 1efp_B ETF, protein (electron 74.5 9.2 0.00032 32.6 7.5 94 64-199 40-144 (252)
33 4grd_A N5-CAIR mutase, phospho 73.9 14 0.00049 29.8 7.9 69 126-205 29-100 (173)
34 3g40_A Na-K-CL cotransporter; 72.6 9.6 0.00033 33.5 7.1 98 65-203 180-277 (294)
35 4b4k_A N5-carboxyaminoimidazol 71.5 18 0.0006 29.5 8.0 70 125-205 38-110 (181)
36 3umv_A Deoxyribodipyrimidine p 71.0 17 0.00057 34.3 9.0 119 64-208 53-173 (506)
37 1xmp_A PURE, phosphoribosylami 68.0 26 0.00088 28.3 8.2 68 127-205 29-99 (170)
38 3kuu_A Phosphoribosylaminoimid 67.5 28 0.00094 28.2 8.3 68 126-204 29-99 (174)
39 1u3d_A Cryptochrome 1 apoprote 67.0 82 0.0028 29.3 13.1 115 64-206 27-141 (509)
40 1ni5_A Putative cell cycle pro 66.6 17 0.00059 33.3 7.9 37 52-88 13-52 (433)
41 1np7_A DNA photolyase; protein 66.0 48 0.0016 30.7 11.0 120 64-206 21-140 (489)
42 1u11_A PURE (N5-carboxyaminoim 65.8 26 0.00088 28.6 7.8 68 127-205 39-109 (182)
43 3oow_A Phosphoribosylaminoimid 65.8 34 0.0012 27.5 8.4 69 126-205 22-93 (166)
44 3trh_A Phosphoribosylaminoimid 65.1 26 0.00088 28.2 7.6 68 126-204 23-93 (169)
45 3ors_A N5-carboxyaminoimidazol 64.6 30 0.001 27.7 7.9 69 126-205 20-91 (163)
46 1iv0_A Hypothetical protein; r 64.2 11 0.00037 27.5 4.9 51 148-203 38-93 (98)
47 2wq7_A RE11660P; lyase-DNA com 63.0 56 0.0019 30.8 11.0 131 53-207 29-165 (543)
48 1o4v_A Phosphoribosylaminoimid 61.7 37 0.0013 27.6 8.1 68 127-205 31-101 (183)
49 3lp6_A Phosphoribosylaminoimid 61.6 37 0.0013 27.5 8.0 68 126-204 24-94 (174)
50 3g40_A Na-K-CL cotransporter; 60.0 89 0.003 27.3 11.0 122 52-205 20-148 (294)
51 3ih5_A Electron transfer flavo 59.5 5.4 0.00019 33.3 2.8 84 52-171 3-101 (217)
52 3rg8_A Phosphoribosylaminoimid 58.8 34 0.0012 27.2 7.3 68 126-204 19-90 (159)
53 1zun_A Sulfate adenylyltransfe 58.7 52 0.0018 28.9 9.3 38 52-89 46-85 (325)
54 2e0i_A 432AA long hypothetical 55.7 51 0.0018 30.2 9.1 115 64-208 16-131 (440)
55 1k92_A Argininosuccinate synth 54.4 74 0.0025 29.5 9.9 35 51-89 9-45 (455)
56 3tvs_A Cryptochrome-1; circadi 54.4 23 0.00078 33.6 6.5 117 64-205 19-138 (538)
57 3fy4_A 6-4 photolyase; DNA rep 54.2 27 0.00092 33.1 7.0 118 64-204 20-141 (537)
58 2wte_A CSA3; antiviral protein 53.1 1E+02 0.0034 25.8 12.1 121 49-203 5-129 (244)
59 1owl_A Photolyase, deoxyribodi 52.3 79 0.0027 29.2 9.9 115 64-206 18-132 (484)
60 2j4d_A Cryptochrome 3, cryptoc 50.0 70 0.0024 30.0 9.2 105 49-171 36-145 (525)
61 1dnp_A DNA photolyase; DNA rep 48.8 29 0.00098 32.2 6.2 74 123-204 56-131 (471)
62 1nu0_A Hypothetical protein YQ 44.7 17 0.00059 28.1 3.4 51 149-203 41-96 (138)
63 2j07_A Deoxyribodipyrimidine p 44.3 99 0.0034 28.0 9.0 111 64-209 17-127 (420)
64 3bl5_A Queuosine biosynthesis 43.4 1.2E+02 0.0041 24.0 11.7 37 50-89 1-38 (219)
65 2h31_A Multifunctional protein 43.1 1E+02 0.0036 28.3 8.8 69 125-204 281-353 (425)
66 1v6t_A Hypothetical UPF0271 pr 42.6 1.2E+02 0.0041 25.9 8.6 120 56-200 32-162 (255)
67 1sur_A PAPS reductase; assimil 41.5 1.3E+02 0.0046 23.9 8.7 34 53-89 45-79 (215)
68 1vhx_A Putative holliday junct 41.4 12 0.00043 29.2 2.1 54 148-205 42-100 (150)
69 2qv7_A Diacylglycerol kinase D 41.1 59 0.002 28.2 6.8 70 127-205 46-116 (337)
70 2der_A TRNA-specific 2-thiouri 38.9 2.1E+02 0.0072 25.5 10.6 36 50-88 15-51 (380)
71 2bon_A Lipid kinase; DAG kinas 37.7 99 0.0034 26.8 7.7 67 131-206 52-121 (332)
72 2nz2_A Argininosuccinate synth 36.9 1.4E+02 0.0046 27.2 8.6 23 150-172 100-122 (413)
73 3o1l_A Formyltetrahydrofolate 36.8 1.7E+02 0.0058 25.4 8.9 103 31-172 85-192 (302)
74 3s40_A Diacylglycerol kinase; 36.7 77 0.0026 27.1 6.7 64 132-205 35-99 (304)
75 1ccw_A Protein (glutamate muta 36.2 1.3E+02 0.0046 22.4 8.3 64 134-202 29-92 (137)
76 2l69_A Rossmann 2X3 fold prote 35.4 35 0.0012 24.9 3.5 47 124-171 14-60 (134)
77 2hma_A Probable tRNA (5-methyl 34.0 1.4E+02 0.0049 26.6 8.2 35 52-89 9-44 (376)
78 2ywb_A GMP synthase [glutamine 33.8 2.9E+02 0.0098 25.5 11.8 35 52-89 209-244 (503)
79 2yxb_A Coenzyme B12-dependent 33.8 77 0.0026 24.6 5.7 64 134-202 44-107 (161)
80 3lou_A Formyltetrahydrofolate 33.4 2.1E+02 0.007 24.7 8.9 105 29-172 73-182 (292)
81 2x5e_A UPF0271 protein PA4511; 32.5 1.1E+02 0.0037 26.1 6.7 123 56-200 38-171 (252)
82 1jq5_A Glycerol dehydrogenase; 32.2 1.1E+02 0.0037 27.0 7.1 67 126-203 48-118 (370)
83 3n0v_A Formyltetrahydrofolate 32.1 2.4E+02 0.0082 24.1 9.8 104 30-172 69-177 (286)
84 1xw8_A UPF0271 protein YBGL; N 32.0 1.3E+02 0.0043 25.7 7.0 122 54-200 27-157 (252)
85 3kcq_A Phosphoribosylglycinami 30.7 2.1E+02 0.007 23.5 8.1 40 132-172 54-93 (215)
86 3qja_A IGPS, indole-3-glycerol 29.6 2.6E+02 0.0088 23.7 9.1 71 125-203 151-221 (272)
87 2c5s_A THII, probable thiamine 29.5 3.1E+02 0.011 24.6 10.9 34 52-88 187-221 (413)
88 2q5c_A NTRC family transcripti 27.8 70 0.0024 25.7 4.6 21 182-204 59-79 (196)
89 3rxy_A NIF3 protein; structura 27.8 41 0.0014 29.2 3.2 51 29-85 16-66 (278)
90 2dfa_A Hypothetical UPF0271 pr 27.5 1.2E+02 0.004 25.9 6.0 120 56-200 32-162 (250)
91 1qv9_A F420-dependent methylen 26.6 69 0.0024 27.4 4.3 51 151-208 54-104 (283)
92 2ejb_A Probable aromatic acid 26.4 93 0.0032 25.1 5.1 32 53-85 2-35 (189)
93 2oq2_A Phosphoadenosine phosph 26.3 2.7E+02 0.0092 23.1 8.3 38 52-89 41-79 (261)
94 2pju_A Propionate catabolism o 26.3 1.7E+02 0.0059 24.1 6.9 21 182-204 71-91 (225)
95 1kor_A Argininosuccinate synth 26.2 3.6E+02 0.012 24.2 9.8 23 150-172 96-118 (400)
96 2o2z_A Hypothetical protein; s 25.8 1.7E+02 0.0059 25.8 7.0 63 137-204 154-219 (323)
97 2pg3_A Queuosine biosynthesis 25.4 2.6E+02 0.0089 22.4 10.8 34 52-89 2-37 (232)
98 3l6u_A ABC-type sugar transpor 24.7 2.7E+02 0.0094 22.4 8.0 70 124-203 26-97 (293)
99 3tqi_A GMP synthase [glutamine 24.6 1.7E+02 0.0057 27.4 7.2 35 53-89 231-266 (527)
100 3zqu_A Probable aromatic acid 23.8 1E+02 0.0036 25.3 4.9 33 52-85 4-38 (209)
101 3m9w_A D-xylose-binding peripl 23.8 2.9E+02 0.0099 22.6 8.0 64 130-203 26-91 (313)
102 2i2x_B MTAC, methyltransferase 23.6 2.8E+02 0.0097 23.0 7.9 63 134-202 149-211 (258)
103 3nbm_A PTS system, lactose-spe 23.2 87 0.003 22.9 3.9 56 133-203 31-86 (108)
104 2wsi_A FAD synthetase; transfe 22.8 3.1E+02 0.011 23.5 8.2 26 148-173 143-169 (306)
105 2fyw_A Conserved hypothetical 22.8 61 0.0021 27.5 3.4 45 36-85 21-66 (267)
106 3u0h_A Xylose isomerase domain 22.7 1.8E+02 0.0061 23.6 6.3 113 66-203 85-208 (281)
107 1nmo_A Hypothetical protein YB 22.5 85 0.0029 26.3 4.3 44 38-86 21-64 (247)
108 3fni_A Putative diflavin flavo 22.3 1.2E+02 0.0039 23.3 4.8 64 134-203 31-95 (159)
109 3sho_A Transcriptional regulat 22.1 2.6E+02 0.009 21.2 7.7 37 50-86 85-122 (187)
110 2dpl_A GMP synthetase, GMP syn 21.7 3.2E+02 0.011 23.3 8.0 35 53-89 21-56 (308)
111 3tsm_A IGPS, indole-3-glycerol 21.5 3.8E+02 0.013 22.8 8.4 69 124-200 157-225 (272)
112 2ppv_A Uncharacterized protein 21.4 1.6E+02 0.0053 26.2 5.9 64 137-205 153-219 (332)
113 3gxq_A Putative regulator of t 21.0 89 0.0031 19.3 2.9 29 137-165 10-38 (54)
114 2amj_A Modulator of drug activ 20.9 1E+02 0.0035 24.6 4.4 46 124-172 35-81 (204)
115 3da8_A Probable 5'-phosphoribo 20.9 2.7E+02 0.0092 22.8 7.0 41 132-172 56-100 (215)
116 1g63_A Epidermin modifying enz 20.9 86 0.0029 25.1 3.8 34 52-86 2-37 (181)
117 3qjg_A Epidermin biosynthesis 20.3 1.2E+02 0.0041 24.1 4.5 47 153-203 70-118 (175)
118 3hly_A Flavodoxin-like domain; 20.3 1.3E+02 0.0046 22.8 4.7 37 134-173 27-63 (161)
119 4ds3_A Phosphoribosylglycinami 20.2 3.5E+02 0.012 21.9 8.4 41 132-172 53-97 (209)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.92 E-value=1.7e-24 Score=172.18 Aligned_cols=141 Identities=15% Similarity=0.238 Sum_probs=118.3
Q ss_pred CCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~ 126 (256)
++.+++||||+|+|+ ..|++||+.+|...+++|++|||+++........+ .....+.+...+.+++.|+
T Consensus 2 ~~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~ 72 (146)
T 3s3t_A 2 NARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALD---------PVLSELLDAEAAHAKDAMR 72 (146)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGH---------HHHHHHHHHHHHHHHHHHH
T ss_pred CCccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc---------cccHHHHHHHHHHHHHHHH
Confidence 367999999999999 99999999999999999999999997542211100 0123344566777888999
Q ss_pred HHHHHhhcCCC-cEEEEEEEcCChHHHHHH-HhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 127 KYIRLCNDAKV-TVETMLVESKATAKAILD-LISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 127 ~~~~~~~~~gv-~v~~~lv~g~~v~eaIl~-~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++.+.+...|+ +++..+..|+ +.++|++ ++++.++||||||+++++.+.+++ .||++++|+++++ |||||||
T Consensus 73 ~~~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~-~Gs~~~~vl~~~~--~pVlvV~ 146 (146)
T 3s3t_A 73 QRQQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA-VGSTTSYVVDHAP--CNVIVIR 146 (146)
T ss_dssp HHHHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS-SCHHHHHHHHHCS--SEEEEEC
T ss_pred HHHHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcceEE-EcchHHHHhccCC--CCEEEeC
Confidence 99998888899 9999888885 6999999 999999999999999998888776 4999999999999 9999996
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.92 E-value=6.5e-24 Score=172.05 Aligned_cols=147 Identities=16% Similarity=0.149 Sum_probs=115.9
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCC-----CCCCCcccc--c-cccccCHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPV-----TYINTPVGR--L-ARSQLNQEQVRVYVNEENNR 120 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~-----~~~~~~~g~--~-~~~~~~~e~~~~~~~~~~~~ 120 (256)
.+++||||+|+|+ ..|++||+.+|+..+++|++|||+++. ......... + +. ..+....+.+...+.
T Consensus 4 ~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 4 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKS---VEEFENELKNKLTEE 80 (162)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccc---hhhhHHHHHHHHHHH
Confidence 5899999999999 999999999999999999999999854 110000000 1 10 011122344556677
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 121 RRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 121 a~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
+++.|+++.+.+...|++++..+..| .+.++|+++|++.++||||||+++++.++++++ ||++++|+++++ |||||
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~-GSv~~~vl~~~~--~pVlv 156 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKDIIVVG-IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILL-GSVTENVIKKSN--KPVLV 156 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSS-CHHHHHHHHHCC--SCEEE
T ss_pred HHHHHHHHHHHHHHcCCceEEEEcCC-CHHHHHHHHHHHcCCCEEEEcCCCCCCccceEe-cchHHHHHHhCC--CCEEE
Confidence 78888998888888899999888887 569999999999999999999999998888764 999999999999 99999
Q ss_pred EeCC
Q 025234 201 VHDG 204 (256)
Q Consensus 201 V~~~ 204 (256)
||..
T Consensus 157 v~~~ 160 (162)
T 1mjh_A 157 VKRK 160 (162)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 9864
No 3
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.90 E-value=2.9e-23 Score=163.69 Aligned_cols=134 Identities=14% Similarity=0.189 Sum_probs=111.4
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHh-cCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHH-HHHHHHHHH
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHA-VSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEEN-NRRRNLLQK 127 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA-~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~-~~a~~~L~~ 127 (256)
|++||||+|+|+ ..|++||+.+| +..+++|+++||+++..... ..+ .....+.+..+ +.+++.|++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~l~~ 70 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYG-EAV---------LAAYDEIEMKEEEKAKLLTQK 70 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCH-HHH---------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCccc-ccc---------cCcHHHHHHHHHHHHHHHHHH
Confidence 589999999999 99999999999 99999999999999753211 000 01112334455 777888999
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+.+.+...|++++..+..|+ +.++|+++++ ++||||||+++++.+.+++ ||++++|+++++ ||||+||
T Consensus 71 ~~~~~~~~g~~~~~~v~~g~-~~~~I~~~a~--~~dliV~G~~~~~~~~~~~--Gs~~~~vl~~~~--~pVlvv~ 138 (138)
T 3idf_A 71 FSTFFTEKGINPFVVIKEGE-PVEMVLEEAK--DYNLLIIGSSENSFLNKIF--ASHQDDFIQKAP--IPVLIVK 138 (138)
T ss_dssp HHHHHHTTTCCCEEEEEESC-HHHHHHHHHT--TCSEEEEECCTTSTTSSCC--CCTTCHHHHHCS--SCEEEEC
T ss_pred HHHHHHHCCCCeEEEEecCC-hHHHHHHHHh--cCCEEEEeCCCcchHHHHh--CcHHHHHHhcCC--CCEEEeC
Confidence 99988888999999888874 6999999998 9999999999998888755 899999999999 9999996
No 4
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.90 E-value=5.1e-23 Score=165.98 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=113.0
Q ss_pred CCCCCeEEEEec--CCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVG--KDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNL 124 (256)
Q Consensus 49 ~~~~~~ILVaVD--~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~ 124 (256)
.+.+++||||+| +|+ ..|++||+.+|+..+++|++|||+++..... . ..+ .+ .+.+...+.+++.
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-~-~~~-----~~----~~~~~~~~~~~~~ 80 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINI-F-DSL-----TP----SKIQAKRKHVEDV 80 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTC-C-CSS-----HH----HHHHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccc-c-ccC-----CH----HHHHHHHHHHHHH
Confidence 467999999999 999 9999999999999999999999999753211 1 111 11 2334556677788
Q ss_pred HHHHHHHhhcCCC-cEEEEEEEcCChHHHHHHH-hhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 125 LQKYIRLCNDAKV-TVETMLVESKATAKAILDL-ISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 125 L~~~~~~~~~~gv-~v~~~lv~g~~v~eaIl~~-a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
|+++.+.+...|+ .++..+..++.+.++|+++ |++.++||||||+++++.+++ + .||++++|+++++ |||||||
T Consensus 81 l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~-~-~Gs~~~~vl~~a~--~PVlvV~ 156 (156)
T 3fg9_A 81 VAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHSK-I-AGAIGPRLARKAP--ISVIVVR 156 (156)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTSS-S-CSCHHHHHHHHCS--SEEEEEC
T ss_pred HHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccce-e-ecchHHHHHHhCC--CCEEEeC
Confidence 8888888877888 5888888834679999999 999999999999999988874 4 4999999999999 9999996
No 5
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.90 E-value=2.4e-23 Score=170.21 Aligned_cols=151 Identities=11% Similarity=-0.001 Sum_probs=111.1
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCH-HHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQ-EQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~-e~~~~~~~~~~~~a~~~L~~ 127 (256)
.+++||||+|+|+ ..|++||+.+|+..+++|++|||+++..... ....++.....+ .....+.+...+.+++.|++
T Consensus 4 m~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 4 MFRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEE-LMDGYSFFYDNAEIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGC-CC------------CCTTSHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc-cccccccccccccccHHHHHHHHHHHHHHHHHH
Confidence 5899999999999 9999999999999999999999998642110 000111000000 00001123345566777888
Q ss_pred HHHHhhcCCCcEEE--EEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 128 YIRLCNDAKVTVET--MLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 128 ~~~~~~~~gv~v~~--~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
+.+.+...|++++. .+..| .+.++|+++|++.++||||||+++++.+.+++ .||++++|+++++ |||||||...
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~-~Gsv~~~vl~~~~--~PVlvv~~~~ 158 (170)
T 2dum_A 83 KAEEVKRAFRAKNVRTIIRFG-IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF-LGSTVMRVLRKTK--KPVLIIKEVD 158 (170)
T ss_dssp HHHHHHHHTTCSEEEEEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC-CCHHHHHHHHHCS--SCEEEECCCC
T ss_pred HHHHHHHcCCceeeeeEEecC-ChHHHHHHHHHHcCCCEEEECCCCCCccccce-echHHHHHHHhCC--CCEEEEccCC
Confidence 88777667888877 77777 46999999999999999999999998888766 4999999999999 9999999754
Q ss_pred c
Q 025234 206 K 206 (256)
Q Consensus 206 ~ 206 (256)
.
T Consensus 159 ~ 159 (170)
T 2dum_A 159 E 159 (170)
T ss_dssp C
T ss_pred c
Confidence 3
No 6
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.90 E-value=5e-23 Score=167.26 Aligned_cols=131 Identities=21% Similarity=0.226 Sum_probs=108.2
Q ss_pred CCCCCeEEEEecC-CH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGK-DD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLL 125 (256)
Q Consensus 49 ~~~~~~ILVaVD~-S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L 125 (256)
.|.|++||||+|+ |+ ..|++||+.+|...+++|++|||++..... . +...+.+++.|
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~------------~--------~~~~~~~~~~l 80 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT------------K--------DEDIIEAKETL 80 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS------------C--------HHHHHHHHHHH
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc------------c--------HHHHHHHHHHH
Confidence 4789999999999 99 999999999999999999999999864210 0 12234556677
Q ss_pred HHHHHHhhcCCCcEEEEE-EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETML-VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~l-v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+++.+.+...|++++..+ +..+++.++|+++|++.++||||||+++++.+.+++ .||++++|+++++ ||||||+
T Consensus 81 ~~~~~~~~~~g~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~-lGSv~~~vl~~a~--~PVLvVr 155 (155)
T 3dlo_A 81 SWAVSIIRKEGAEGEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI-FGSVARDVILKAN--KPVICIK 155 (155)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE-CCHHHHHHHHHCS--SCEEEEC
T ss_pred HHHHHHHHhcCCCceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE-eccHHHHHHHhCC--CCEEEeC
Confidence 777777777788877653 334567999999999999999999999998888766 4999999999999 9999996
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.90 E-value=1.1e-23 Score=167.26 Aligned_cols=141 Identities=13% Similarity=0.204 Sum_probs=110.2
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
|++||||+|+|+ ..|++||+.+|+..+++|+++||+++........+..+... ...+.+..++.+++.++++.
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQ-----LDIPDDALKDYATEIAVQAK 76 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGG-----GCCCTTHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhh-----hhhHHHHHHHHHHHHHHHHH
Confidence 799999999999 99999999999999999999999986420000000000000 00111334556677888888
Q ss_pred HHhhcCCCcE---EEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 130 RLCNDAKVTV---ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 130 ~~~~~~gv~v---~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+.+...|+++ +..+..| ++.++|++++++.++||||||+++++.+.+++ .||++++|+++++ ||||||
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~-~Gs~~~~vl~~~~--~pVlvV 147 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGG-RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL-LGSVAQRVAGSAH--CPVLVV 147 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC-CCHHHHHHHHHCS--SCEEEC
T ss_pred HHHHhcCCCccceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCcccccee-eccHHHHHHhhCC--CCEEEC
Confidence 8887788877 8888887 56999999999999999999999998888766 4999999999999 999986
No 8
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.89 E-value=4.8e-23 Score=168.68 Aligned_cols=141 Identities=18% Similarity=0.100 Sum_probs=108.2
Q ss_pred CCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEE--EEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLV--HVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNL 124 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LL--HV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~ 124 (256)
...+++||||+|+|+ ..|++||+.+|. .+++|++| ||+++.... ... ..+ ...+.+...+.+++.
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~-~~~-~~~--------~~~~~~~~~~~~~~~ 82 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDAR-AAD-ILK--------DESYKVTGTAPIYEI 82 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC------------------------------CCTHHHH
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccc-ccc-ccc--------cHHHHHHHHHHHHHH
Confidence 456899999999999 999999999999 99999999 887654210 000 000 011222334456678
Q ss_pred HHHHHHHhhcCCCc-EEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 125 LQKYIRLCNDAKVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 125 L~~~~~~~~~~gv~-v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
|+++.+.+...|++ ++..+..| ++.++|+++|++.++||||||+++++.++++++ ||++++|+++++ |||||||.
T Consensus 83 l~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~l-GSva~~vl~~a~--~PVlvV~~ 158 (163)
T 1tq8_A 83 LHDAKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGRLL-GSVPANVSRRAK--VDVLIVHT 158 (163)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHT-BBHHHHHHHHTT--CEEEEECC
T ss_pred HHHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccceee-ccHHHHHHHhCC--CCEEEEeC
Confidence 88888888778998 98888887 569999999999999999999999998888774 999999999999 99999986
Q ss_pred C
Q 025234 204 G 204 (256)
Q Consensus 204 ~ 204 (256)
.
T Consensus 159 ~ 159 (163)
T 1tq8_A 159 T 159 (163)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.89 E-value=1.8e-22 Score=165.93 Aligned_cols=148 Identities=20% Similarity=0.256 Sum_probs=104.2
Q ss_pred CCCeEEEEecCC----------H-HHHHHHHHHHhcC---CCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHH
Q 025234 51 AASDVYVAVGKD----------D-LHVLKWALDHAVS---PGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNE 116 (256)
Q Consensus 51 ~~~~ILVaVD~S----------~-~~AL~~Al~lA~~---~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~ 116 (256)
.+++||||+|+| . ..||+||+.++.. .+++|++|||+++........+. .....+....+.+.
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 80 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDS---IYASPEDFRDMRQS 80 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------C---CCCSHHHHHHHTTS
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeeccccccccccc---ccCCHHHHHHHHHH
Confidence 479999999997 4 8899999998744 58999999998753210000000 00112223333334
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcc
Q 025234 117 ENNRRRNLLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYC 196 (256)
Q Consensus 117 ~~~~a~~~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~c 196 (256)
..+++++.|+++.+.+...|++++..+..| .+.++|+++|++.++||||||+++++.+.++++ ||++++|+++++ |
T Consensus 81 ~~~~~~~~l~~~~~~~~~~g~~~~~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~-Gsva~~vl~~a~--~ 156 (175)
T 2gm3_A 81 NKAKGLHLLEFFVNKCHEIGVGCEAWIKTG-DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFV-GTVSAFCVKHAE--C 156 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCEEEEEEEES-CHHHHHHHHHHHHCCSEEEEEECCCC---------CHHHHHHHHCS--S
T ss_pred HHHHHHHHHHHHHHHHHHCCCceEEEEecC-CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhc-CchHHHHHhCCC--C
Confidence 455566788888887777789998888887 569999999999999999999999998887764 999999999999 9
Q ss_pred eEEEEeCCc
Q 025234 197 EVTIVHDGK 205 (256)
Q Consensus 197 PVLVV~~~~ 205 (256)
||||||...
T Consensus 157 pVlvv~~~~ 165 (175)
T 2gm3_A 157 PVMTIKRNA 165 (175)
T ss_dssp CEEEEECCG
T ss_pred CEEEEcCCc
Confidence 999999743
No 10
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.89 E-value=9.5e-23 Score=162.91 Aligned_cols=141 Identities=17% Similarity=0.159 Sum_probs=97.6
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCC-CccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYIN-TPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~-~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~ 126 (256)
+.+++||||+|+|+ ..|++||+.+|...+++|++|||+++..... ...+..+.. .. .+.+...+++++.|+
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~l~ 77 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLD-TE-----TTYDAMLDVEKQKLS 77 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSS-SC-----CCHHHHHHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcC-HH-----HHHHHHHHHHHHHHH
Confidence 45899999999999 9999999999999999999999998743210 011111110 00 111334455666666
Q ss_pred HHHHHhhcCCCc-EEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 127 KYIRLCNDAKVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 127 ~~~~~~~~~gv~-v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
++.+.+ |++ ++..+..| .+.++|++++++.++||||||+++++.+. ++ .||++++|+++++ ||||+||..
T Consensus 78 ~~~~~~---~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~-~Gs~~~~vl~~~~--~pVlvv~~~ 148 (150)
T 3tnj_A 78 QIGNTL---GIDPAHRWLVWG-EPREEIIRIAEQENVDLIVVGSHGRHGLA-LL-LGSTANSVLHYAK--CDVLAVRLR 148 (150)
T ss_dssp HHHHHH---TCCGGGEEEEES-CHHHHHHHHHHHTTCSEEEEEEC----------CCCHHHHHHHHCS--SEEEEEECC
T ss_pred HHHHHc---CCCcceEEEecC-CHHHHHHHHHHHcCCCEEEEecCCCCCcC-eE-ecchHHHHHHhCC--CCEEEEeCC
Confidence 665554 454 35566666 56999999999999999999999998887 66 4999999999999 999999974
No 11
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.88 E-value=1.3e-22 Score=160.23 Aligned_cols=133 Identities=25% Similarity=0.301 Sum_probs=102.2
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
+++||||+|+|+ ..|++||+.+|+..+++|++|||+++... ....+ .++ .+.+...+.+++.|+++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~---~~~~~-----~~~---~~~~~~~~~~~~~l~~~~ 70 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPD---YLGEP-----FFE---EALRRRLERAEGVLEEAR 70 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-------------------------CHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCc---ccccc-----chH---HHHHHHHHHHHHHHHHHH
Confidence 789999999999 99999999999989999999999985321 00100 011 112233445566676665
Q ss_pred HHhhcCCC-cEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 130 RLCNDAKV-TVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 130 ~~~~~~gv-~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+. .|+ +++..+..| ++.++|++++++.++||||||+++++.+.+++ .||++++|+++++ |||||||
T Consensus 71 ~~---~g~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~-~Gs~~~~vl~~~~--~pVlvv~ 137 (137)
T 2z08_A 71 AL---TGVPKEDALLLEG-VPAEAILQAARAEKADLIVMGTRGLGALGSLF-LGSQSQRVVAEAP--CPVLLVR 137 (137)
T ss_dssp HH---HCCCGGGEEEEES-SHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS-SCHHHHHHHHHCS--SCEEEEC
T ss_pred HH---cCCCccEEEEEec-CHHHHHHHHHHHcCCCEEEECCCCCchhhhhh-hccHHHHHHhcCC--CCEEEeC
Confidence 54 477 777777776 56999999999999999999999998887766 4999999999999 9999996
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.87 E-value=1.3e-21 Score=154.92 Aligned_cols=139 Identities=14% Similarity=0.222 Sum_probs=96.6
Q ss_pred CCeEEEEecCCH----HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 52 ~~~ILVaVD~S~----~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
.++||||+|+|+ ..|++||+.+|+..+++|++|||+++...... .+... .... ...++..++..+.+++
T Consensus 1 ~k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~~~-----~~~~-~~~~~~~~~~~~~l~~ 73 (143)
T 3fdx_A 1 SNAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYAS-LGMAY-----TAEL-PGMDELREGSETQLKE 73 (143)
T ss_dssp CCEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC-----------------------CHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccccc-ccccc-----cchh-hhHHHHHHHHHHHHHH
Confidence 379999999998 69999999999999999999999997532111 11000 0000 0111222233333333
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+.+.+...+++++..+..| ++.++|++++++.++||||||+++ +.+.+++ .||++++|+++++ |||||||
T Consensus 74 ~~~~~~~~~~~v~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~-~Gs~~~~v~~~~~--~pVlvv~ 143 (143)
T 3fdx_A 74 IAKKFSIPEDRMHFHVAEG-SPKDKILALAKSLPADLVIIASHR-PDITTYL-LGSNAAAVVRHAE--CSVLVVR 143 (143)
T ss_dssp HHTTSCCCGGGEEEEEEES-CHHHHHHHHHHHTTCSEEEEESSC-TTCCSCS-SCHHHHHHHHHCS--SEEEEEC
T ss_pred HHHHcCCCCCceEEEEEec-ChHHHHHHHHHHhCCCEEEEeCCC-CCCeeee-eccHHHHHHHhCC--CCEEEeC
Confidence 3333222345678888887 569999999999999999999996 6667666 4999999999999 9999996
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.85 E-value=1.7e-20 Score=167.41 Aligned_cols=145 Identities=12% Similarity=0.130 Sum_probs=115.2
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
+.+++|||++|+|+ ..|++||+.+|+..+++|++|||+++..... .+. +..+....+.+...+.+++.|++
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~l~~ 77 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDM--TTL-----LSPDERNAMRKGVINQKTAWIKQ 77 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGC--TTT-----SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHHHcCCeEEEEEEecccchhh--ccc-----cChhhHHHHHHHHHHHHHHHHHH
Confidence 45799999999999 9999999999999999999999987532111 011 11223334444555667778888
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+.+.+...|++++..+...+.+.++|++++++.++||||||+++++.+.++++ ||++++|+++++ ||||+||.+
T Consensus 78 ~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~-Gs~~~~vl~~~~--~PVlvv~~~ 151 (319)
T 3olq_A 78 QARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIF-TPLDWQLLRKCP--APVWMVKDK 151 (319)
T ss_dssp HHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBC-CHHHHHHHHHCS--SCEEEEESS
T ss_pred HHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccc-cccHHHHHhcCC--CCEEEecCc
Confidence 88887778999999888445679999999999999999999999988887664 999999999999 999999974
No 14
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.84 E-value=3.9e-21 Score=151.96 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=99.0
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
+++||||+|+|+ ..|++||+.+|+..+++|+++||+++..... .+. .. . ....+.+...+++++.|+++.
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~--~~~-~~----~-~~~~~~~~~~~~~~~~l~~~~ 73 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLY--TGL-ID----V-NMSSMQDRISTETQKALLDLA 73 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGC--CCC-EE----H-HHHHHTTCCCCHHHHHHHHHH
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhh--ccc-cc----c-chHHHHHHHHHHHHHHHHHHH
Confidence 789999999999 9999999999999999999999995421100 010 00 0 011111122234455566554
Q ss_pred HHhhcCCCcE-EEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 130 RLCNDAKVTV-ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 130 ~~~~~~gv~v-~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+. .|+++ ...+..| .+.++|++++++.++||||||++ ++.+.+ + ||++++|+++++ |||||||..
T Consensus 74 ~~---~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~-~~~~~~-l--gs~~~~vl~~~~--~pVlvv~~~ 139 (141)
T 1jmv_A 74 ES---VDYPISEKLSGSG-DLGQVLSDAIEQYDVDLLVTGHH-QDFWSK-L--MSSTRQVMNTIK--IDMLVVPLR 139 (141)
T ss_dssp HH---SSSCCCCEEEEEE-CHHHHHHHHHHHTTCCEEEEEEC-CCCHHH-H--HHHHHHHHTTCC--SEEEEEECC
T ss_pred HH---cCCCceEEEEecC-CHHHHHHHHHHhcCCCEEEEeCC-Cchhhh-h--cchHHHHHhcCC--CCEEEeeCC
Confidence 43 46665 4556666 56999999999999999999999 887776 4 799999999999 999999974
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.83 E-value=2.8e-20 Score=164.69 Aligned_cols=149 Identities=14% Similarity=0.151 Sum_probs=114.9
Q ss_pred CccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHH
Q 025234 42 SIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENN 119 (256)
Q Consensus 42 ~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~ 119 (256)
+.++.-.-+.+++||||+|+|+ ..|++||+.+|+..+++|++|||++.........+.. .+ .+.+..++
T Consensus 12 ~~~~~~~m~m~~~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~-----~~----~~~~~~~~ 82 (294)
T 3loq_A 12 DLGTENLYFQSNAMLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGID-----ID----HYIDEMSE 82 (294)
T ss_dssp -----CCSSTTCEEEEECCSCTGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCC-----TT----HHHHHHHH
T ss_pred ccCcchHHHhhccEEEecCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCccccccccccc-----HH----HHHHHHHH
Confidence 3334444467899999999999 9999999999999999999999998753211111110 11 22244566
Q ss_pred HHHHHHHHHHHHhhcCCCcEEE-EEE-EcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcce
Q 025234 120 RRRNLLQKYIRLCNDAKVTVET-MLV-ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCE 197 (256)
Q Consensus 120 ~a~~~L~~~~~~~~~~gv~v~~-~lv-~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cP 197 (256)
.+++.|+++.+.+...|++++. .+. .| .+.++| ++++.++||||||+++++.+.++++ ||++++|+++++ ||
T Consensus 83 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g-~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~-Gs~~~~vl~~~~--~P 156 (294)
T 3loq_A 83 KAEEVLPEVAQKIEAAGIKAEVIKPFPAG-DPVVEI--IKASENYSFIAMGSRGASKFKKILL-GSVSEGVLHDSK--VP 156 (294)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECSSCCEE-CHHHHH--HHHHTTSSEEEEECCCCCHHHHHHH-CCHHHHHHHHCS--SC
T ss_pred HHHHHHHHHHHHHHHcCCCcceeEeeccC-ChhHhe--eeccCCCCEEEEcCCCCccccceee-ccHHHHHHhcCC--CC
Confidence 7778888888888888999988 677 66 468999 9999999999999999998887764 999999999999 99
Q ss_pred EEEEeCCc
Q 025234 198 VTIVHDGK 205 (256)
Q Consensus 198 VLVV~~~~ 205 (256)
||+||...
T Consensus 157 Vlvv~~~~ 164 (294)
T 3loq_A 157 VYIFKHDM 164 (294)
T ss_dssp EEEECCCT
T ss_pred EEEecCcc
Confidence 99999753
No 16
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.81 E-value=2.3e-19 Score=141.37 Aligned_cols=130 Identities=12% Similarity=0.008 Sum_probs=97.6
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEe-cC-CCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVF-SP-VTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~-~~-~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~ 126 (256)
.+++||||+|+|+ ..|++||+.+|+..+++|++|||+ +. ..........++. .+ .+.+...+.+++.|+
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~l~ 75 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPF---PP----EIKEESKKRIERRLR 75 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCC---CT----HHHHHHHHHHHHHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCC---Ch----HHHHHHHHHHHHHHH
Confidence 5799999999999 999999999999999999999998 63 1000000000110 01 122344555666777
Q ss_pred HHHHH--hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 127 KYIRL--CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 127 ~~~~~--~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++ +. +...| +++..+..| .+.++|++++++.++||||||++++ |++++|+++++ |||||||
T Consensus 76 ~~-~~~~~~~~~-~~~~~~~~g-~~~~~I~~~a~~~~~dliV~G~~g~----------sv~~~vl~~a~--~PVlvv~ 138 (138)
T 1q77_A 76 EV-WEKLTGSTE-IPGVEYRIG-PLSEEVKKFVEGKGYELVVWACYPS----------AYLCKVIDGLN--LASLIVK 138 (138)
T ss_dssp HH-HHHHHSCCC-CCCEEEECS-CHHHHHHHHHTTSCCSEEEECSCCG----------GGTHHHHHHSS--SEEEECC
T ss_pred HH-HHHhhccCC-cceEEEEcC-CHHHHHHHHHHhcCCCEEEEeCCCC----------chHHHHHHhCC--CceEeeC
Confidence 77 65 35566 777777776 5799999999999999999999875 88999999999 9999986
No 17
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.81 E-value=1.7e-19 Score=157.27 Aligned_cols=145 Identities=16% Similarity=0.052 Sum_probs=109.3
Q ss_pred CeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCC-ccccccccccCH-HHHHHHHHHHHHHHHHHHHHH
Q 025234 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINT-PVGRLARSQLNQ-EQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 53 ~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~-~~g~~~~~~~~~-e~~~~~~~~~~~~a~~~L~~~ 128 (256)
++||||+|+|+ ..|++||+.+|+..+++|+++||+++...... ..+ .+...-.. +..+.+.+...+.+++.|+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLD-FGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC--------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999 99999999999999999999999975321000 000 00000000 001111334456677788888
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCC-ccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 129 IRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSP-RSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~-~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
.+.+...|++++..+..|. +.++|+++ +.++||||||+++++ .+.+++ .||++++|+++++ ||||+||..
T Consensus 80 ~~~~~~~g~~~~~~~~~g~-~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~-~Gs~~~~v~~~a~--~PVlvv~~~ 150 (268)
T 3ab8_A 80 RQSALAAGVAVEAVLEEGV-PHEAILRR--ARAADLLVLGRSGEAHGDGFGG-LGSTADRVLRASP--VPVLLAPGE 150 (268)
T ss_dssp HHHHHHTTCCEEEEEEEEC-HHHHHHHH--HTTCSEEEEESSCTTSCTTCCS-CCHHHHHHHHHCS--SCEEEECSS
T ss_pred HHHHHhCCCCeEEEEecCC-HHHHHHhh--ccCCCEEEEeccCCCccccccc-cchhHHHHHHhCC--CCEEEECCC
Confidence 8888778999999888875 69999999 789999999999998 787766 4999999999999 999999964
No 18
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.80 E-value=3.1e-19 Score=159.23 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=108.6
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
..+++||||+|+|+ ..|++||+.+|+..+++|++|||+++... ..+.+.++ .+ +.+...+.+++.|++
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~-~~~~~~~~-----~~----~~~~~~~~~~~~l~~ 86 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVA-TWLEVPLP-----PG----VLRWQQDHGRHLIDD 86 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCC-CTTCCCCC-----HH----HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCccc-ccccCCCC-----ch----hhHHHHHHHHHHHHH
Confidence 46899999999999 99999999999999999999999984321 11111111 11 123334555667777
Q ss_pred HHHHhhcC-----CCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 128 YIRLCNDA-----KVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 128 ~~~~~~~~-----gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
+.+.+... |++++..+..| .+.++|+++++ ++||||||+++++.+.+++ .||++++|+++++ |||||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~-~Gs~~~~vl~~~~--~PVlvv~ 160 (309)
T 3cis_A 87 ALKVVEQASLRAGPPTVHSEIVPA-AAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL-LGSVSSGLLRHAH--CPVVIIH 160 (309)
T ss_dssp HHHHHHHHCSSSCCSCEEEEEESS-CHHHHHHHHGG--GEEEEEEESSCTTCCTTCC-SCHHHHHHHHHCS--SCEEEEC
T ss_pred HHHHHHHhcccCCCceEEEEEecC-CHHHHHHHHhc--CCCEEEECCCCCccccccc-cCcHHHHHHHhCC--CCEEEEc
Confidence 77666543 88999888876 56999999997 8999999999998887766 4999999999999 9999999
Q ss_pred CCc
Q 025234 203 DGK 205 (256)
Q Consensus 203 ~~~ 205 (256)
...
T Consensus 161 ~~~ 163 (309)
T 3cis_A 161 DED 163 (309)
T ss_dssp TTC
T ss_pred CCc
Confidence 753
No 19
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.79 E-value=3.1e-19 Score=157.87 Aligned_cols=123 Identities=13% Similarity=0.046 Sum_probs=102.8
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
+.+++|||++|+|+ ..|++||+.+|+..+++|+++||.++.. .++.|++
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~-----------------------------~~~~l~~ 55 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAGVTQSHLHLLVCEKRRD-----------------------------HSAALND 55 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHHHHCCEEEEEEECSSSC-----------------------------CHHHHHH
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHHhcCCeEEEEEeeCcHH-----------------------------HHHHHHH
Confidence 35899999999999 9999999999999999999999987310 0123333
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+.+.+...|++++..+..++.+.++|++++++.++||||||+++++.+.+++ .||++++|+++++ ||||+||.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~-~gs~~~~vl~~~~--~PVlvv~~~ 129 (290)
T 3mt0_A 56 LAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI-LTPDDWKLLRFAP--CPVLMTKTA 129 (290)
T ss_dssp HHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS-CCHHHHHHHHHCS--SCEEEECCC
T ss_pred HHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcc-cCHHHHHHHhcCC--CCEEEecCC
Confidence 3344445789999988866678999999999999999999999998888766 4999999999999 999999954
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.78 E-value=1.3e-18 Score=153.88 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=102.9
Q ss_pred CCCeEEEEecCCH---------HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD---------LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRR 121 (256)
Q Consensus 51 ~~~~ILVaVD~S~---------~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a 121 (256)
.+++||||+|+|+ ..|++||+.+|...+++|+++||+++..... . .+. . .+.+...+..
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~---~-~~~----~----~~~~~~~~~~ 200 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSS---A-DPT----F----QLSETIEARY 200 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC-------------C----H----HHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccc---c-Cch----h----HHHHHHHHHH
Confidence 6899999999986 5799999999999999999999998653211 0 110 0 2223344455
Q ss_pred HHHHHHHHHHhhcCCCc-EEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 122 RNLLQKYIRLCNDAKVT-VETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 122 ~~~L~~~~~~~~~~gv~-v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
++.|+++.+.+ |++ +...+..| ++.++|++++++.++||||||++++++++++| .||++++|+++++ ||||+
T Consensus 201 ~~~l~~~~~~~---g~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~-~Gsv~~~vl~~~~--~pVLv 273 (290)
T 3mt0_A 201 REACRTFQAEY---GFSDEQLHIEEG-PADVLIPRTAQKLDAVVTVIGTVARTGLSGAL-IGNTAEVVLDTLE--SDVLV 273 (290)
T ss_dssp HHHHHHHHHHH---TCCTTTEEEEES-CHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC-SCHHHHHHHTTCS--SEEEE
T ss_pred HHHHHHHHHHc---CCCcceEEEecc-CHHHHHHHHHHhcCCCEEEECCCCCcCCccee-cchHHHHHHhcCC--CCEEE
Confidence 55666655543 553 45566676 57999999999999999999999999998877 4999999999999 99999
Q ss_pred EeCCc
Q 025234 201 VHDGK 205 (256)
Q Consensus 201 V~~~~ 205 (256)
||+..
T Consensus 274 v~~~~ 278 (290)
T 3mt0_A 274 LKPDD 278 (290)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98643
No 21
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.77 E-value=2.8e-18 Score=153.05 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=102.1
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
.+++||||+|+|+ ..|++||+.+|...+++|++|||+++..... .+. ...+ ...+..++.++++
T Consensus 170 ~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~-----~~~--~~~~-------~~~~~~~~~l~~~ 235 (309)
T 3cis_A 170 QQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSE-----WPG--IDWP-------ATQSMAEQVLAER 235 (309)
T ss_dssp CCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTT-----CSS--CCHH-------HHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccC-----CCc--ccHH-------HHHHHHHHHHHHH
Confidence 4789999999999 8999999999999999999999998643210 000 0111 1122333444444
Q ss_pred HHHhhc--CCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 129 IRLCND--AKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 129 ~~~~~~--~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
...+.. .+++++..+..| .+.++|+++++ ++||||||+++++++.++|+ ||++++|+++++ ||||+||.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~g-~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~-Gsv~~~vl~~~~--~pVlvv~~ 306 (309)
T 3cis_A 236 LAGWQERYPNVAITRVVVRD-QPARQLVQRSE--EAQLVVVGSRGRGGYAGMLV-GSVGETVAQLAR--TPVIVARE 306 (309)
T ss_dssp HTTHHHHCTTSCEEEEEESS-CHHHHHHHHHT--TCSEEEEESSCSSCCTTCSS-CHHHHHHHHHCS--SCEEEECC
T ss_pred HHHHHhhCCCCcEEEEEEcC-CHHHHHHHhhC--CCCEEEECCCCCCCcccccc-CcHHHHHHhcCC--CCEEEeCC
Confidence 443322 478888887776 57999999997 99999999999998888774 999999999999 99999986
No 22
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.77 E-value=2.9e-18 Score=151.74 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=103.0
Q ss_pred CCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 50 ~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
..+++||||+|+|+ ..|+++|+.++...+++|++|||+++.. .++.+++
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----------------------------~~~~l~~ 218 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----------------------------KTADLRV 218 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----------------------------CHHHHHH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----------------------------HHHHHHH
Confidence 45799999999999 9999999999998999999999998642 0112333
Q ss_pred HHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 128 YIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
+.+.+...|++++..+..| ++.++|++++++.++||||||++++++++++|+ ||++++|+++++ ||||+||.+.
T Consensus 219 ~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~-Gs~~~~vl~~~~--~pvLvv~~~~ 292 (294)
T 3loq_A 219 MEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTMIL-GSTSESVIRRSP--VPVFVCKRGD 292 (294)
T ss_dssp HHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHH-HCHHHHHHHHCS--SCEEEECSCT
T ss_pred HHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccceee-CcHHHHHHhcCC--CCEEEECCCC
Confidence 3334444688888877776 679999999999999999999999999888774 899999999999 9999999753
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.77 E-value=1.5e-18 Score=154.73 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=107.3
Q ss_pred CCCeEEEEecCCH---------HHHHHHHHHHhcCC--CCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD---------LHVLKWALDHAVSP--GARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENN 119 (256)
Q Consensus 51 ~~~~ILVaVD~S~---------~~AL~~Al~lA~~~--~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~ 119 (256)
.+++||||+|+|+ ..|+++|+.+|... +++|++|||++...... ....+. .. ...+.++..+
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~--~~~~~~--~~---~~~~~~~~~~ 227 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINI--AIELPD--FD---PNLYNNALRG 227 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSC--CTTCTT--CC---HHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhh--hccCCc--cc---HHHHHHHHHH
Confidence 5899999999997 78999999999987 99999999998753211 011111 11 1233345555
Q ss_pred HHHHHHHHHHHHhhcCCC-cEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceE
Q 025234 120 RRRNLLQKYIRLCNDAKV-TVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEV 198 (256)
Q Consensus 120 ~a~~~L~~~~~~~~~~gv-~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPV 198 (256)
++++.|+++.+.+ ++ .+...+..| .+.++|++++++.++||||||+++++++.++|+ ||++++|+++++ |||
T Consensus 228 ~~~~~l~~~~~~~---~~~~~~~~v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~-Gsv~~~vl~~~~--~pV 300 (319)
T 3olq_A 228 QHLIAMKELRQKF---SIPEEKTHVKEG-LPEQVIPQVCEELNAGIVVLGILGRTGLSAAFL-GNTAEQLIDHIK--CDL 300 (319)
T ss_dssp HHHHHHHHHHHHT---TCCGGGEEEEES-CHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHH-HHHHHHHHTTCC--SEE
T ss_pred HHHHHHHHHHHHh---CCCcccEEEecC-CcHHHHHHHHHHhCCCEEEEeccCccCCccccc-cHHHHHHHhhCC--CCE
Confidence 6666676666543 44 344556666 569999999999999999999999999888774 999999999999 999
Q ss_pred EEEeCCc
Q 025234 199 TIVHDGK 205 (256)
Q Consensus 199 LVV~~~~ 205 (256)
|+||...
T Consensus 301 Lvv~~~~ 307 (319)
T 3olq_A 301 LAIKPDG 307 (319)
T ss_dssp EEECCTT
T ss_pred EEECCCC
Confidence 9998744
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.66 E-value=3.3e-16 Score=136.38 Aligned_cols=114 Identities=18% Similarity=0.151 Sum_probs=91.9
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
.+++||||+|+|+ ..|+++|..++...+++|+++||+++. + ..++.++++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~-----------------~-----------~~~~~l~~~ 204 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDP-----------------A-----------RAEAWALEA 204 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSH-----------------H-----------HHHHHHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcH-----------------H-----------HHHHHHHHH
Confidence 5789999999999 899999999999889999999998642 0 112233444
Q ss_pred HHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 129 IRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
.+.+...|++++..+..| ++.++|++++++. ||||||+ ++++++ .||++++|+++++ ||||+||
T Consensus 205 ~~~l~~~~~~~~~~~~~g-~~~~~i~~~a~~~--dliV~G~----~~~~~~-~Gs~~~~vl~~~~--~pvlvv~ 268 (268)
T 3ab8_A 205 EAYLRDHGVEASALVLGG-DAADHLLRLQGPG--DLLALGA----PVRRLV-FGSTAERVIRNAQ--GPVLTAR 268 (268)
T ss_dssp HHHHHHTTCCEEEEEECS-CHHHHHHHHCCTT--EEEEEEC----CCSCCS-SCCHHHHHHHHCS--SCEEEEC
T ss_pred HHHHHHcCCceEEEEeCC-ChHHHHHHHHHhC--CEEEECC----cccccE-eccHHHHHHhcCC--CCEEEeC
Confidence 444445688888877776 5799999999987 9999999 345555 4999999999999 9999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=90.51 E-value=5.2 Score=31.26 Aligned_cols=80 Identities=15% Similarity=0.039 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcEE-EEEEEcCChHHHHHHHhhhcC--CCEEEEcCcCCCccchhhccCChHHHHHhhCC
Q 025234 117 ENNRRRNLLQKYIRLCNDAKVTVE-TMLVESKATAKAILDLISVAN--VTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAP 193 (256)
Q Consensus 117 ~~~~a~~~L~~~~~~~~~~gv~v~-~~lv~g~~v~eaIl~~a~e~~--aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~ 193 (256)
....+++.|......+...|+.++ ..+.+.+ |..+|.+...+.+ +|-||+-+..+... ++|- -..+.+.-+ ..
T Consensus 52 a~~~A~~~l~~sl~aL~~~G~~a~~G~v~d~~-Pl~AL~~~v~~~~~~~deiIV~T~Ph~vs-~~fh-~DwasrAr~-~g 127 (138)
T 2iel_A 52 VRRRAEEEAAAAKRALEAQGIPVEEAKAGDIS-PLLAIEEELLAHPGAYQGIVLSTLPPGLS-RWLR-LDVHTQAER-FG 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCSEEEEEESS-HHHHHHHHHHHSTTSCSEEEEEECCTTTC-HHHH-TTHHHHGGG-GS
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccCCCC-hHHHHHHHHHhcCCCCceEEEEcCCchHH-HHHh-ccHHHHHHh-cC
Confidence 345566677777777777899988 8888865 5899999999999 99999999987643 4452 477777777 77
Q ss_pred CcceEEEEe
Q 025234 194 DYCEVTIVH 202 (256)
Q Consensus 194 ~~cPVLVV~ 202 (256)
+||+-+-
T Consensus 128 --vPVlhl~ 134 (138)
T 2iel_A 128 --LPVIHVI 134 (138)
T ss_dssp --SCEEEEE
T ss_pred --CCEEEEe
Confidence 9998664
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=89.13 E-value=2.6 Score=39.20 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
..++|+||+.|.. ..++.++..+....+.++.++||--... | ++ .....+..
T Consensus 17 ~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr------g--------~~------------s~~~~~~v 70 (464)
T 3a2k_A 17 EGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR------G--------RE------------SEEEMEFV 70 (464)
T ss_dssp CSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC------T--------HH------------HHHHHHHH
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC------c--------cc------------cHHHHHHH
Confidence 3578999999988 4444545444545678999999964321 0 00 00112223
Q ss_pred HHHhhcCCCcEEEEEEEc--------CCh--------HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 129 IRLCNDAKVTVETMLVES--------KAT--------AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 129 ~~~~~~~gv~v~~~lv~g--------~~v--------~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
.+.|...|+++...-+.. ..+ ...+.+++.+.+++.|+.|.|..
T Consensus 71 ~~~~~~lgi~~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 71 KRFCVERRILCETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHHHHTTCEEEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred HHHHHHcCCcEEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 344555688766544321 111 24566788889999999999864
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=87.03 E-value=4.4 Score=35.55 Aligned_cols=95 Identities=9% Similarity=0.043 Sum_probs=54.2
Q ss_pred CCCeEEEEecCCH-HHHHHHHHH-HhcCCCCE-EEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHH
Q 025234 51 AASDVYVAVGKDD-LHVLKWALD-HAVSPGAR-IYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK 127 (256)
Q Consensus 51 ~~~~ILVaVD~S~-~~AL~~Al~-lA~~~~a~-l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~ 127 (256)
..++|+|++.|.. -.+|-+.+. .....+.+ +.++||-.... + .+ + ...+.
T Consensus 23 ~~~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r--~-------~s---~---------------~~~~~ 75 (317)
T 1wy5_A 23 GERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR--E-------SA---E---------------RDEEF 75 (317)
T ss_dssp SCCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS--T-------HH---H---------------HHHHH
T ss_pred CCCEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC--c-------cc---H---------------HHHHH
Confidence 4578999999988 444444443 33344667 99999964321 0 00 0 01111
Q ss_pred HHHHhhcCCCcEEEEEEE--------cCCh--------HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 128 YIRLCNDAKVTVETMLVE--------SKAT--------AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 128 ~~~~~~~~gv~v~~~lv~--------g~~v--------~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
..+.|...|++....-+. +..+ ...+.+++++.+++.|+.|.+..
T Consensus 76 v~~~a~~lgi~~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~d 136 (317)
T 1wy5_A 76 CKEFAKERNMKIFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLN 136 (317)
T ss_dssp HHHHHHHHTCCEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHH
T ss_pred HHHHHHHcCCcEEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchh
Confidence 222333447766554332 1111 13566778889999999999854
No 28
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=81.89 E-value=16 Score=33.98 Aligned_cols=124 Identities=14% Similarity=0.023 Sum_probs=75.5
Q ss_pred eEEEEecCCH----HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 54 DVYVAVGKDD----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 54 ~ILVaVD~S~----~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
.+||=.-.+- ..||..|...+...+..|..|.++++.... .+ . ....-..+-|..+.
T Consensus 38 ~~l~WfrrDLRl~DN~aL~~A~~~a~~~~~~v~~vfi~dp~~~~---~~--------~--------~r~~Fl~~sL~~L~ 98 (482)
T 2xry_A 38 PVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLE---AG--------I--------RQYEFMLKGLQELE 98 (482)
T ss_dssp CEEEECSSCCCSSSCHHHHHHHHHHHHHTSCEEEEEEECTTGGG---SC--------H--------HHHHHHHHHHHHHH
T ss_pred cEEEEecCCCCccccHHHHHHHHHHHHcCCcEEEEEEeChhhhc---cC--------H--------HHHHHHHHHHHHHH
Confidence 4555553322 678888887776567789999999875321 11 1 11112233455555
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCccc
Q 025234 130 RLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKV 207 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~~ 207 (256)
+.+...|+++. ++.| ++.+.|.+++++.+++.|+.-.......+ .....|.+... |++..+......
T Consensus 99 ~~L~~~G~~L~--v~~g-~~~~~l~~l~~~~~~~~V~~~~~~~~~~~------~~~~~v~~~lg--i~~~~~~~~~l~ 165 (482)
T 2xry_A 99 VSLSRKKIPSF--FLRG-DPGEKISRFVKDYNAGTLVTDFSPLRIKN------QWIEKVISGIS--IPFFEVDAHNVV 165 (482)
T ss_dssp HHHHHTTCCEE--EEES-CHHHHHHHHHHHTTCSEEEEECCCSHHHH------HHHHHHHHHCC--SCEEEECCSSSS
T ss_pred HHHHHcCCcEE--EEeC-CHHHHHHHHHHHcCCCEEEEecccchhHH------HHHHHHHHHcC--CEEEEEeCCEEc
Confidence 55556687654 4456 56899999999999999998654322111 12244555557 999888764433
No 29
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=79.65 E-value=13 Score=29.62 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
+....++..|++++..+.......+.+.+++++...+.||.++.....+. .-|.-.++ +||+-||.+.
T Consensus 17 ~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lp---------gvva~~t~--~PVIgVP~~~ 84 (157)
T 2ywx_A 17 KAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLP---------GVVASLTT--KPVIAVPVDA 84 (157)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHH---------HHHHTTCS--SCEEEEEECS
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhH---------HHHHhccC--CCEEEecCCC
Confidence 34444455689999888876666789999998766688888886654432 24455777 9999999833
No 30
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=76.19 E-value=3.6 Score=35.51 Aligned_cols=100 Identities=14% Similarity=0.067 Sum_probs=59.0
Q ss_pred EecCCH--HHHHHHHHHHhcCCCC--EEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 58 AVGKDD--LHVLKWALDHAVSPGA--RIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 58 aVD~S~--~~AL~~Al~lA~~~~a--~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
.--.++ ..||..|+++....+. +|++|.+-++. .++.+.+...
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~~------------------------------~~~~lr~ala--- 78 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR------------------------------VDESLRKCLA--- 78 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG------------------------------GHHHHHHHHH---
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh------------------------------HHHHHHHHHh---
Confidence 334455 8999999988766565 88888775321 0112333322
Q ss_pred cCCCcEEEEEEEc--------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 134 DAKVTVETMLVES--------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 134 ~~gv~v~~~lv~g--------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
.|..--. +++. ...+..|.+++++.++|+|++|....++.. +.+...|..... .|.+
T Consensus 79 -~GaD~vi-~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~-----~~v~p~lA~~L~--~~~v 143 (264)
T 1o97_C 79 -KGADRAV-RVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAY-----ASTGISVASYLN--WPHA 143 (264)
T ss_dssp -TTCSEEE-EECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTTTCC-----CCHHHHHHHHHT--CCEE
T ss_pred -cCCCEEE-EEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCch-----hhHHHHHHHHhC--CCcc
Confidence 2544222 2222 123567788888889999999998864332 345555555555 5543
No 31
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=75.69 E-value=6.8 Score=33.60 Aligned_cols=94 Identities=7% Similarity=0.017 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCCC--EEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q 025234 64 LHVLKWALDHAVSPGA--RIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVET 141 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a--~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~ 141 (256)
..||+.|+++... +. +|++|.+-++. +++.+.+...+ |..--.
T Consensus 43 ~~Ale~A~~Lke~-g~~~~V~av~~G~~~------------------------------a~~~lr~ala~----GaD~vi 87 (255)
T 1efv_B 43 EIAVEEAVRLKEK-KLVKEVIAVSCGPAQ------------------------------CQETIRTALAM----GADRGI 87 (255)
T ss_dssp HHHHHHHHHHHHT-TSCSEEEEEEEESTT------------------------------HHHHHHHHHHH----TCSEEE
T ss_pred HHHHHHHHHHHhc-CCCceEEEEEeCChh------------------------------HHHHHHHHHhc----CCCEEE
Confidence 8899999888766 65 88888776432 01123333222 544322
Q ss_pred EEE-E-----cC---ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 142 MLV-E-----SK---ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 142 ~lv-~-----g~---~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
.+- . +. ..+..|.+++++.++|+|++|....++.. +.+...|..... .|.+
T Consensus 88 ~v~~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s~d~d~-----~~v~p~lA~~L~--~~~v 147 (255)
T 1efv_B 88 HVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDC-----NQTGQMTAGFLD--WPQG 147 (255)
T ss_dssp EEECCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC-----CCHHHHHHHHHT--CCEE
T ss_pred EEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcccCCch-----hhHHHHHHHHhC--CCcc
Confidence 222 1 21 23567788888889999999998865332 455556665555 5543
No 32
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=74.50 E-value=9.2 Score=32.63 Aligned_cols=94 Identities=12% Similarity=0.110 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCCCC--EEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEE
Q 025234 64 LHVLKWALDHAVSPGA--RIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVET 141 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a--~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~ 141 (256)
..||+.|+++... +. +|++|.+-++.. ++.+.+...+ |..--.
T Consensus 40 ~~Ale~A~~Lke~-g~~~~V~av~~G~~~a------------------------------~~~lr~ala~----GaD~vi 84 (252)
T 1efp_B 40 EIAVEEAIRLKEK-GQAEEIIAVSIGVKQA------------------------------AETLRTALAM----GADRAI 84 (252)
T ss_dssp HHHHHHHHHHHTT-TSCSEEEEEEEESGGG------------------------------HHHHHHHHHH----TCSEEE
T ss_pred HHHHHHHHHHHhc-CCCceEEEEEeCChhH------------------------------HHHHHHHHhc----CCCEEE
Confidence 8899999988766 66 888887764210 1122233222 443222
Q ss_pred EEE-E-----cC---ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEE
Q 025234 142 MLV-E-----SK---ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVT 199 (256)
Q Consensus 142 ~lv-~-----g~---~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVL 199 (256)
.+- . +. ..+..|.+++++.++|+|++|....++.. +.+...|..... .|.+
T Consensus 85 ~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d~~~-----~~v~p~lA~~L~--~~~v 144 (252)
T 1efp_B 85 LVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDM-----NATGQMLAAILG--WAQA 144 (252)
T ss_dssp EEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTTTCC-----CCHHHHHHHHHT--CEEE
T ss_pred EEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCch-----hhHHHHHHHHhC--CCcc
Confidence 222 1 11 23567788888889999999998864322 455566666665 5554
No 33
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=73.86 E-value=14 Score=29.82 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=46.4
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh---cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e---~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|++++..+.......+.+.+++++ .+++.||.|+.+...+. .-|.-.++ +||+-||
T Consensus 29 ~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLp---------gvvA~~t~--~PVIgVP 97 (173)
T 4grd_A 29 KHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLP---------GMLAAKTT--VPVLGVP 97 (173)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHH---------HHHHHHCC--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccch---------hhheecCC--CCEEEEE
Confidence 3344444557899998887765556666666554 67898888886654332 23445777 9999999
Q ss_pred CCc
Q 025234 203 DGK 205 (256)
Q Consensus 203 ~~~ 205 (256)
...
T Consensus 98 v~~ 100 (173)
T 4grd_A 98 VAS 100 (173)
T ss_dssp ECC
T ss_pred cCC
Confidence 643
No 34
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=72.60 E-value=9.6 Score=33.51 Aligned_cols=98 Identities=11% Similarity=0.029 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEE
Q 025234 65 HVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLV 144 (256)
Q Consensus 65 ~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv 144 (256)
-++-.|-.+....+++|.|+-|++.. ...+.+++.++++.+.++- +..+. ++
T Consensus 180 LmlllAylL~~nW~A~I~L~~vV~de-------------------------~a~~~a~~~l~~Lv~~~Ri-~a~~~--vv 231 (294)
T 3g40_A 180 LALLIAYKLKSNWKASLSFMTFAPTA-------------------------IQAQAAENFLQSLAELARI-PNVKM--QV 231 (294)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEECSSH-------------------------HHHHHHHHHHHHHHHHHTC-CSCEE--EE
T ss_pred HHHHHHHHHhhCcCCeEEEEEecCCH-------------------------HHHHHHHHHHHHHHHHhcC-CceEE--Ee
Confidence 34444443444459999999997642 2245567788888887763 33332 33
Q ss_pred EcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 145 ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 145 ~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
. .+ ..+|+..+ -+|||+++|-....-+. .....+..+. ...+.|++
T Consensus 232 ~-~~-F~~il~~s--~~ADL~flGl~~~~df~-------~~~~~~~~~~--ssc~f~~d 277 (294)
T 3g40_A 232 L-RE-NPIKSSKL--PFASLHIFSLDPNPDLD-------LARHLMEKAG--SSCIFALD 277 (294)
T ss_dssp E-SS-CTTTSSSC--CCCSEEEEECCSSCCHH-------HHHHHHHHHT--SEEEEEEC
T ss_pred c-Cc-hHHHHhhC--cCCCEEEEcCCCCCcHH-------HHHHHHHhcC--CeEEEEec
Confidence 3 45 56666555 57999999997665433 2267788888 78888876
No 35
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=71.50 E-value=18 Score=29.53 Aligned_cols=70 Identities=10% Similarity=0.128 Sum_probs=47.3
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhh---hcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 125 LQKYIRLCNDAKVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~---e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
+++..+.++..|++++..++......+.+.++++ +.+++.||.|+.+...+. .-|.-.++ .||+-|
T Consensus 38 ~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLp---------GvvAa~T~--~PVIGV 106 (181)
T 4b4k_A 38 MKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP---------GMVAAKTN--LPVIGV 106 (181)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHH---------HHHHTTCC--SCEEEE
T ss_pred HHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccch---------hhHHhcCC--CCEEEE
Confidence 3344444555789999988876555676776665 467889998886654332 23445777 999999
Q ss_pred eCCc
Q 025234 202 HDGK 205 (256)
Q Consensus 202 ~~~~ 205 (256)
|...
T Consensus 107 Pv~s 110 (181)
T 4b4k_A 107 PVQS 110 (181)
T ss_dssp ECCC
T ss_pred ecCC
Confidence 9843
No 36
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=70.99 E-value=17 Score=34.28 Aligned_cols=119 Identities=12% Similarity=0.021 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+..|...+..|+.|.|+++....+ ..+ . ....-+.+-|..+.+.+...|++. .+
T Consensus 53 N~AL~~A~~~a~~~~~pVl~vfildp~~~~~-~~~--------~--------~r~~FL~~sL~dL~~~L~~lG~~L--~v 113 (506)
T 3umv_A 53 NWALLHAAGLAAASASPLAVAFALFPRPFLL-SAR--------R--------RQLGFLLRGLRRLAADAAARHLPF--FL 113 (506)
T ss_dssp CHHHHHHHHHHHHHTCCEEEEEECCCTTCGG-GCC--------H--------HHHHHHHHHHHHHHHHHHHTTCCE--EE
T ss_pred cHHHHHHHHhhhhcCCCEEEEEeccchhhcc-CCC--------H--------HHHHHHHHHHHHHHHHHHHcCCce--EE
Confidence 6788888888766678899999999763211 111 1 111222334445555555567664 45
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHh--hCCCcceEEEEeCCcccc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKK--NAPDYCEVTIVHDGKKVV 208 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~--~a~~~cPVLVV~~~~~~~ 208 (256)
+.|.+ .+. .+++++.+++.|+.- .......+..- -.+.. .++ ... |++..+.......
T Consensus 114 ~~G~p-~~v-~~L~~~~~a~~V~~d-~ep~~~~r~rD-~~V~~-~l~~~~~g--i~~~~~~~~~l~~ 173 (506)
T 3umv_A 114 FTGGP-AEI-PALVQRLGASTLVAD-FSPLRPVREAL-DAVVG-DLRREAPG--VAVHQVDAHNVVP 173 (506)
T ss_dssp ESSCT-THH-HHHHHHTTCSEEEEC-CCCCHHHHHHH-HHHHH-HHHHHCTT--SEEEEECCSCSSC
T ss_pred EecCh-HHH-HHHHHhcCCCEEEec-cChhHHHHHHH-HHHHH-HHhhccCC--eEEEEeCCcEEEC
Confidence 56655 677 999999999999972 22111111110 12222 222 445 9998886554433
No 37
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=67.98 E-value=26 Score=28.25 Aligned_cols=68 Identities=10% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh---cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e---~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+....++..|++++..+.......+.+.+++++ .+++.||.|+.+...+. .-|.-.++ +||+-||.
T Consensus 29 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP~ 97 (170)
T 1xmp_A 29 YACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLP---------GMVAAKTN--LPVIGVPV 97 (170)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH---------HHHHTTCC--SCEEEEEE
T ss_pred HHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH---------HHHHhccC--CCEEEeeC
Confidence 344444556999998887655556777777764 45888888886654432 24455777 99999997
Q ss_pred Cc
Q 025234 204 GK 205 (256)
Q Consensus 204 ~~ 205 (256)
..
T Consensus 98 ~~ 99 (170)
T 1xmp_A 98 QS 99 (170)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 38
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=67.46 E-value=28 Score=28.19 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh---cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e---~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|++++..+.......+.+.+++++ .+++.||.|......+. .-|.-.++ +||+-||
T Consensus 29 ~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP 97 (174)
T 3kuu_A 29 QFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLP---------GMLAAKTL--VPVLGVP 97 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHH---------HHHHHTCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH---------HHHHhccC--CCEEEee
Confidence 3444444557999998887665556777777654 67898888886554332 34555778 9999999
Q ss_pred CC
Q 025234 203 DG 204 (256)
Q Consensus 203 ~~ 204 (256)
..
T Consensus 98 ~~ 99 (174)
T 3kuu_A 98 VQ 99 (174)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 39
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=66.97 E-value=82 Score=29.30 Aligned_cols=115 Identities=12% Similarity=0.075 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+.. + .+..|.|+++........+ .. ...-..+-|..+.+.+...|++.. +
T Consensus 27 N~aL~~A~~~----~-~v~pvfi~dp~~~~~~~~~--------~~--------~~~fl~~sL~~L~~~L~~~G~~L~--v 83 (509)
T 1u3d_A 27 NPALAAAVRA----G-PVIALFVWAPEEEGHYHPG--------RV--------SRWWLKNSLAQLDSSLRSLGTCLI--T 83 (509)
T ss_dssp CHHHHHHHHH----S-CEEEEEEECGGGGTTCCCC--------HH--------HHHHHHHHHHHHHHHHHHTTCCEE--E
T ss_pred hHHHHHHHhC----C-CEEEEEEECchhcccCCcc--------hH--------HHHHHHHHHHHHHHHHHHCCCeEE--E
Confidence 6677777764 2 5778889987532110111 00 011223445555555556687653 3
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 206 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~ 206 (256)
+.++++.+.|.+++++.+++.|+.-..-. ...... -......+.... |+|..+.....
T Consensus 84 ~~~g~~~~~l~~l~~~~~~~~V~~~~~~~-p~~~~r--d~~v~~~l~~~g--i~~~~~~~~~l 141 (509)
T 1u3d_A 84 KRSTDSVASLLDVVKSTGASQIFFNHLYD-PLSLVR--DHRAKDVLTAQG--IAVRSFNADLL 141 (509)
T ss_dssp EECSCHHHHHHHHHHHHTCCEEEEECCCS-HHHHHH--HHHHHHHHHTTT--CEEEEECCSCS
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEecccC-HHHHHH--HHHHHHHHHHcC--cEEEEECCCEE
Confidence 45556789999999999999998865332 222111 111234455667 99988876544
No 40
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=66.56 E-value=17 Score=33.27 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=26.2
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcC-CCCEEEEEEEec
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVS-PGARIYLVHVFS 88 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~-~~a~l~LLHV~~ 88 (256)
.++|+|++.|.. ..++..+..+... .+-++.++||--
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdh 52 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHH 52 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECC
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEEC
Confidence 578999999988 4444444444444 678999999964
No 41
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=65.99 E-value=48 Score=30.71 Aligned_cols=120 Identities=12% Similarity=0.032 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+. .+..+..|.|+++........+... .... ...-..+-|..+.+.+...|++.. +
T Consensus 21 N~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~---~~~~--------r~~Fl~~sL~~L~~~L~~~G~~L~--v 83 (489)
T 1np7_A 21 HEPLHRALK----SGLAITAVYCYDPRQFAQTHQGFAK---TGPW--------RSNFLQQSVQNLAESLQKVGNKLL--V 83 (489)
T ss_dssp CHHHHHHHH----TTSEEEEEEEECGGGGSBCTTSCBS---SCHH--------HHHHHHHHHHHHHHHHHHTTCCEE--E
T ss_pred HHHHHHHHh----cCCCEEEEEEECchhhcccccccCC---CCHH--------HHHHHHHHHHHHHHHHHHCCCcEE--E
Confidence 556666654 3567889999987532211000000 0111 111223345555555555677654 4
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 206 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~ 206 (256)
+.| ++.+.|.+++++.+++.|+.-..-....++.- -.+ ...+.... |+|..+.....
T Consensus 84 ~~g-~~~~~l~~l~~~~~~~~V~~~~~~~~~~~~rd--~~v-~~~l~~~g--i~~~~~~~~~l 140 (489)
T 1np7_A 84 TTG-LPEQVIPQIAKQINAKTIYYHREVTQEELDVE--RNL-VKQLTILG--IEAKGYWGSTL 140 (489)
T ss_dssp EES-CHHHHHHHHHHHTTEEEEEEECCCSHHHHHHH--HHH-HHHHHHHT--CEEEEECCSSS
T ss_pred EEC-CHHHHHHHHHHHcCCCEEEEecccCHHHHHHH--HHH-HHHHHhcC--CeEEEecCCee
Confidence 556 45899999999999999888754432211111 122 33445556 89888776553
No 42
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=65.83 E-value=26 Score=28.59 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=46.7
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh---cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e---~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+....++..|++++..+.......+.+.+++++ .+++.||.|+.+...+. .-|.-.++ +||+-||.
T Consensus 39 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP~ 107 (182)
T 1u11_A 39 HADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLP---------GMCAAWTR--LPVLGVPV 107 (182)
T ss_dssp HHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH---------HHHHHHCS--SCEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhH---------HHHHhccC--CCEEEeeC
Confidence 344444557999998887665556777777764 45888888886654332 34555778 99999997
Q ss_pred Cc
Q 025234 204 GK 205 (256)
Q Consensus 204 ~~ 205 (256)
..
T Consensus 108 ~~ 109 (182)
T 1u11_A 108 ES 109 (182)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 43
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=65.78 E-value=34 Score=27.46 Aligned_cols=69 Identities=12% Similarity=0.146 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh---cCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLISV---ANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e---~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|+.++..+.......+.+.+++++ .+++.||.|+.....+. .-|.-.++ +||+-||
T Consensus 22 ~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP 90 (166)
T 3oow_A 22 KECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLP---------GMVAAKTT--LPVLGVP 90 (166)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHH---------HHHHHTCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhH---------HHHHhccC--CCEEEee
Confidence 3344444557899988887665556778877754 46888888886544332 34555778 9999999
Q ss_pred CCc
Q 025234 203 DGK 205 (256)
Q Consensus 203 ~~~ 205 (256)
...
T Consensus 91 ~~~ 93 (166)
T 3oow_A 91 VKS 93 (166)
T ss_dssp CCC
T ss_pred cCc
Confidence 743
No 44
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=65.07 E-value=26 Score=28.24 Aligned_cols=68 Identities=9% Similarity=0.105 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhh---hcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~---e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|++++..+.......+.+.++++ +.+++.||.|+.....+. .-|.-.++ +||+-||
T Consensus 23 ~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP 91 (169)
T 3trh_A 23 ETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLA---------GTIAAHTL--KPVIGVP 91 (169)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHH---------HHHHHTCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhH---------HHHHhcCC--CCEEEee
Confidence 334444455799999888765555677776654 467898888876544332 34555778 9999999
Q ss_pred CC
Q 025234 203 DG 204 (256)
Q Consensus 203 ~~ 204 (256)
..
T Consensus 92 ~~ 93 (169)
T 3trh_A 92 MA 93 (169)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 45
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=64.56 E-value=30 Score=27.72 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhh---hcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~---e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|++++..+.......+.+.++++ +.+++.||.|+.+...+. .-|.-.++ +||+-||
T Consensus 20 ~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP 88 (163)
T 3ors_A 20 QESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLP---------GMVASLTT--LPVIGVP 88 (163)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHH---------HHHHHHCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhH---------HHHHhccC--CCEEEee
Confidence 344444455799999888766555677777765 456898888886654332 24555788 9999999
Q ss_pred CCc
Q 025234 203 DGK 205 (256)
Q Consensus 203 ~~~ 205 (256)
...
T Consensus 89 ~~~ 91 (163)
T 3ors_A 89 IET 91 (163)
T ss_dssp ECC
T ss_pred CCC
Confidence 643
No 46
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=64.19 E-value=11 Score=27.47 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=33.0
Q ss_pred ChHHHHHHHhhhcCCCEEEEcCcC-----CCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 148 ATAKAILDLISVANVTSLVMGTKL-----SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 148 ~v~eaIl~~a~e~~aDLIVmGs~~-----~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
...+.|.+++++++++.||+|--. .+...... -..++.+-.. + +||..+-+
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~--~~f~~~L~~~-~--lpV~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKV--LPLVEALRAR-G--VEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTT--HHHHHHHHHT-T--CEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHH--HHHHHHHhcC-C--CCEEEECC
Confidence 346889999999999999999331 11111100 1234566666 7 99998864
No 47
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=63.03 E-value=56 Score=30.79 Aligned_cols=131 Identities=11% Similarity=-0.001 Sum_probs=76.2
Q ss_pred CeEEEEecCCH----HHHHHHHHHHhcC--CCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHH
Q 025234 53 SDVYVAVGKDD----LHVLKWALDHAVS--PGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQ 126 (256)
Q Consensus 53 ~~ILVaVD~S~----~~AL~~Al~lA~~--~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~ 126 (256)
..+||=.-.+- ..||..|+..+.. .+..|..|.++++........+ . ....-..+-|.
T Consensus 29 ~~vl~WfrrDLRl~DN~aL~~A~~~~~~~~~~~pv~~vfi~dp~~~~~~~~~--------~--------~r~~Fl~~sL~ 92 (543)
T 2wq7_A 29 STLVHWFRKGLRLHDNPALSHIFTAANAAPGRYFVRPIFILDPGILDWMQVG--------A--------NRWRFLQQTLE 92 (543)
T ss_dssp EEEEEEESSCCCSTTCHHHHHHHHHHHHSTTTEEEEEEEEECTTGGGCTTSC--------H--------HHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcchHHHHHHHHHhCccccCCCeEEEEEEECchhhcccCCC--------H--------HHHHHHHHHHH
Confidence 34455554333 6788888876643 4667999999997532111111 1 11112233455
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcc
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 206 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~ 206 (256)
.+.+.+...|++.. ++.| ++.+.|.+++++.+++.|+.-..-. ...+.. -......+.... |+|..+.....
T Consensus 93 ~L~~~L~~~G~~L~--v~~g-~~~~~l~~l~~~~~~~~v~~~~~~~-p~~~~r--d~~v~~~~~~~g--i~~~~~~~~~l 164 (543)
T 2wq7_A 93 DLDNQLRKLNSRLF--VVRG-KPAEVFPRIFKSWRVEMLTFETDIE-PYSVTR--DAAVQKLAKAEG--VRVETHCSHTI 164 (543)
T ss_dssp HHHHHHHHTTCCCE--EEES-CHHHHHHHHHHHTTEEEEEEECCCS-HHHHHH--HHHHHHHHHHHT--CEEEEECCSSS
T ss_pred HHHHHHHHCCCeEE--EEeC-CHHHHHHHHHHHcCCCEEEEecCcC-HHHHHH--HHHHHHHHHHcC--CEEEEecCCEE
Confidence 55555555677653 3456 4689999999999999998865432 222111 122234555667 99988876644
Q ss_pred c
Q 025234 207 V 207 (256)
Q Consensus 207 ~ 207 (256)
.
T Consensus 165 ~ 165 (543)
T 2wq7_A 165 Y 165 (543)
T ss_dssp S
T ss_pred E
Confidence 3
No 48
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=61.71 E-value=37 Score=27.65 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=46.0
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhh---hcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLIS---VANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~---e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+....++..|++++..+.......+.+.++++ +.+++.||.|+.+...+. .-|.-.++ +||+-||.
T Consensus 31 ~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP~ 99 (183)
T 1o4v_A 31 QAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLP---------GMVASITH--LPVIGVPV 99 (183)
T ss_dssp HHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHH---------HHHHHHCS--SCEEEEEE
T ss_pred HHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccH---------HHHHhccC--CCEEEeeC
Confidence 34444455699999888765555677777765 456898888886654332 34555788 99999997
Q ss_pred Cc
Q 025234 204 GK 205 (256)
Q Consensus 204 ~~ 205 (256)
..
T Consensus 100 ~~ 101 (183)
T 1o4v_A 100 KT 101 (183)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 49
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=61.56 E-value=37 Score=27.45 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=45.7
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHh---hhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLI---SVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a---~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
++....++..|++++..+.......+.+.+++ ++.+++.||.|+.....+. .-|.-.++ +||+-||
T Consensus 24 ~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgVP 92 (174)
T 3lp6_A 24 ADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLP---------GMVAAATP--LPVIGVP 92 (174)
T ss_dssp HHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHH---------HHHHHHCS--SCEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhH---------HHHHhccC--CCEEEee
Confidence 33444445578999888876555456666664 4578998888886654332 34555788 9999999
Q ss_pred CC
Q 025234 203 DG 204 (256)
Q Consensus 203 ~~ 204 (256)
..
T Consensus 93 ~~ 94 (174)
T 3lp6_A 93 VP 94 (174)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 50
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=60.02 E-value=89 Score=27.32 Aligned_cols=122 Identities=7% Similarity=-0.000 Sum_probs=73.7
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYI 129 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~ 129 (256)
.-+|||+++... ...+++|..+.. +..-+++++|.+..... .+.++ ++.+.
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~-~~G~ltv~~i~p~~~~~----------------------~l~~q----l~~l~ 72 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITY-PKGSVKLLGLAGNTDKE----------------------NLLSQ----LPSIS 72 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHT-TTCEEEEEECC---CTT----------------------CHHHH----HHHHH
T ss_pred CCcEEEecCCchhhhhHHHHHHHhcc-CceeEEEEEEccCCCcc----------------------HHHHH----HHHHH
Confidence 357999995544 889998877765 67889999997644210 00011 13334
Q ss_pred HHhhcCCCcEEEEEEEcCChHHHHHHHhhhcC-----CCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 130 RLCNDAKVTVETMLVESKATAKAILDLISVAN-----VTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~-----aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
+.+..+++.+...++...++..++...++.++ +.-|+||-........-+ ..+... +.+.. .-|++.+..
T Consensus 73 ~~l~~r~v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~~y--~~~i~~-~~~~~--~nVlil~~~ 147 (294)
T 3g40_A 73 EGFQEEGVFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDEEI--REIIRK-ASMYR--MGVLLFSKH 147 (294)
T ss_dssp HHHHHTTCEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHHHH--HHHHHH-HHHTT--CEEEEEECC
T ss_pred HHHHhCCceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhHHH--HHHHHH-HHHhC--ceEEEEecC
Confidence 45556899888888887778888888877754 578999887654322222 233333 33567 789998764
Q ss_pred c
Q 025234 205 K 205 (256)
Q Consensus 205 ~ 205 (256)
.
T Consensus 148 ~ 148 (294)
T 3g40_A 148 P 148 (294)
T ss_dssp T
T ss_pred C
Confidence 3
No 51
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=59.49 E-value=5.4 Score=33.26 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=54.2
Q ss_pred CCeEEEEecCC-----H--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHH
Q 025234 52 ASDVYVAVGKD-----D--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNL 124 (256)
Q Consensus 52 ~~~ILVaVD~S-----~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~ 124 (256)
|++|||-++-. + .++|..|.+++...+.++++|-+-+.... .
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~-------------------------------~ 51 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKE-------------------------------I 51 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTT-------------------------------T
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHH-------------------------------H
Confidence 57799988743 3 89999999998877888888877543110 1
Q ss_pred HHHHHHHhhcCCCcEEEEEEEc--------CChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 125 LQKYIRLCNDAKVTVETMLVES--------KATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g--------~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
++++ ...|..--. ++.. ...+..|.+++++.++|+|++|...
T Consensus 52 ~~~~----~~~Gad~v~-~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 52 EKQI----LPYGVDKLH-VFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp HHHH----GGGTCSEEE-EEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred HHHH----HhcCCCEEE-EecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 1111 123544222 2232 1136778899999999999999854
No 52
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=58.80 E-value=34 Score=27.22 Aligned_cols=68 Identities=9% Similarity=-0.002 Sum_probs=46.1
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhh---c-CCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 126 QKYIRLCNDAKVTVETMLVESKATAKAILDLISV---A-NVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e---~-~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
++....++..|++++..+.......+.+.+++++ . +++.||.|+.....+. .-|.-.++ +||+-|
T Consensus 19 ~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lp---------gvvA~~t~--~PVIgV 87 (159)
T 3rg8_A 19 EKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALS---------GFVDGFVK--GATIAC 87 (159)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHH---------HHHHHHSS--SCEEEC
T ss_pred HHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhH---------HHHHhccC--CCEEEe
Confidence 3344444557899998887665556777777654 2 5899998886654332 24455778 999999
Q ss_pred eCC
Q 025234 202 HDG 204 (256)
Q Consensus 202 ~~~ 204 (256)
|..
T Consensus 88 P~~ 90 (159)
T 3rg8_A 88 PPP 90 (159)
T ss_dssp CCC
T ss_pred eCC
Confidence 964
No 53
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=58.73 E-value=52 Score=28.88 Aligned_cols=38 Identities=11% Similarity=-0.014 Sum_probs=24.4
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
+.+|+|++.|.. ...|..+.......+-.+.++|+-..
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg 85 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 85 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC
Confidence 568999999988 44444444433333456788888543
No 54
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=55.72 E-value=51 Score=30.24 Aligned_cols=115 Identities=16% Similarity=0.099 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCc-cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTP-VGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETM 142 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~-~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~ 142 (256)
..||..|+. .+..|..|.|+++......+ .+ . ....-..+-|..+.+.+...|++..
T Consensus 16 N~aL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~--------~--------~r~~Fl~~sL~~L~~~L~~~G~~L~-- 73 (440)
T 2e0i_A 16 NTGLNYALS----ECDRVIPVFIADPRQLINNPYKS--------E--------FAVSFMINSLLELDDELRKKGSRLN-- 73 (440)
T ss_dssp CHHHHHHHH----HSSEEEEEEEECHHHHSSCTTCC--------H--------HHHHHHHHHHHHHHHHHHTTTCCCE--
T ss_pred hHHHHHHHh----cCCCEEEEEEeChhhhccCCcCC--------H--------HHHHHHHHHHHHHHHHHHHcCCeEE--
Confidence 346666665 36689999999874211101 11 1 1112223445555555666677653
Q ss_pred EEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcccc
Q 025234 143 LVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVV 208 (256)
Q Consensus 143 lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~~~ 208 (256)
++.| ++.+.|.++++ +++.|+.-..-... .+.. -......+.... |+|..+.......
T Consensus 74 v~~g-~~~~~l~~l~~--~~~~v~~~~~~~~~-~~~r--d~~v~~~l~~~g--i~~~~~~~~~l~~ 131 (440)
T 2e0i_A 74 VFFG-EAEKVVSRFFN--KVDAIYVNEDYTPF-SISR--DEKIRKVCEENG--IEFKAYEDYLLTP 131 (440)
T ss_dssp EEES-CHHHHHHHHCT--TCSEEEEECCCSHH-HHHH--HHHHHHHHHTTT--CEEEEECCSCSSC
T ss_pred EEEC-CHHHHHHHHHc--CCCEEEEecccChH-HHHH--HHHHHHHHHHcC--ceEEEecCCEEEc
Confidence 3456 55899999998 99998875443222 1111 122234455557 9998887654443
No 55
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=54.44 E-value=74 Score=29.54 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=26.6
Q ss_pred CCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 51 ~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
..++|+|++.|.- .-++.|+.+ .+.+|+.+|+.-.
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e----~G~eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQ----KGAVPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHH----TTCEEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHH----cCCEEEEEEEEcC
Confidence 3579999999888 666666644 2889999998754
No 56
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=54.39 E-value=23 Score=33.60 Aligned_cols=117 Identities=12% Similarity=-0.007 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCcEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDA---KVTVE 140 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~---gv~v~ 140 (256)
..||..|+..+. .+..|+.|+|+++........| . ....-..+-|..+.+.+... |++.
T Consensus 19 N~AL~~A~~~~~-~g~~vl~vfi~dp~~~~~~~~~--------~--------~r~~Fl~~sL~~L~~~L~~~~~~G~~L- 80 (538)
T 3tvs_A 19 NPALLAALADKD-QGIALIPVFIFDGESAGTKNVG--------Y--------NRMRFLLDSLQDIDDQLQAATDGRGRL- 80 (538)
T ss_dssp CHHHHTTTGGGT-TTCBCCEEEEECSSSSCSTTCC--------H--------HHHHHHHHHHHHHHHHGGGSCSSSSCC-
T ss_pred hHHHHHHHHhCC-CCCCEEEEEecChhhhccCCCC--------H--------HHHHHHHHHHHHHHHHHHHhhcCCCeE-
Confidence 446666655443 3448999999997642111111 1 11122334555555556656 7654
Q ss_pred EEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 141 TMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 141 ~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
.+..|. +.+.|.+++++.+++.|+.-..- ....+.. -......++... |++..+....
T Consensus 81 -~v~~G~-~~~vl~~L~~~~~a~~V~~n~~~-~~~~~~R--D~~v~~~l~~~g--i~~~~~~~~~ 138 (538)
T 3tvs_A 81 -LVFEGE-PAYIFRRLHEQVRLHRICIEQDC-EPIWNER--DESIRSLCRELN--IDFVEKVSHT 138 (538)
T ss_dssp -EEEESC-HHHHHHHHHHHHCEEEECEECCC-CGGGHHH--HHHHHHHHHHSS--CCCCEECCSS
T ss_pred -EEEeCC-HHHHHHHHHHHcCCCEEEEccCC-CHHHHHH--HHHHHHHHHhCC--ceEEEecCCE
Confidence 345664 58999999999999999864432 2222111 112234555566 7776665443
No 57
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=54.22 E-value=27 Score=33.14 Aligned_cols=118 Identities=12% Similarity=0.035 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCc----cccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTP----VGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTV 139 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~----~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v 139 (256)
..||..|+ ..+..|+.|+|+++....+.+ .|.. ...... ..-..+-|..+.+.+...|++.
T Consensus 20 N~AL~~A~----~~~~~vlpvfi~dp~~~~~~~~~~~~g~~---~~g~~r--------~~Fl~~sL~~L~~~L~~~G~~L 84 (537)
T 3fy4_A 20 NPALEYAS----KGSEFMYPVFVIDPHYMESDPSAFSPGSS---RAGVNR--------IRFLLESLKDLDSSLKKLGSRL 84 (537)
T ss_dssp CHHHHHHH----TTCSCEEEEEEECHHHHSCCTTSSSSBCS---SCBHHH--------HHHHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHH----hcCCCEEEEEEeChhhhcccccccccccc---cCCHHH--------HHHHHHHHHHHHHHHHHcCCce
Confidence 44555554 346789999999874321110 0100 011111 1122334444555555556654
Q ss_pred EEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 140 ETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 140 ~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
.++.| .+.+.|.+++++.+++.|+.-..-. ...+.. -......++... |++..+...
T Consensus 85 --~v~~G-~~~~vl~~L~~~~~~~~V~~n~~~~-p~~~~R--D~~v~~~l~~~g--I~~~~~~~~ 141 (537)
T 3fy4_A 85 --LVFKG-EPGEVLVRCLQEWKVKRLCFEYDTD-PYYQAL--DVKVKDYASSTG--VEVFSPVSH 141 (537)
T ss_dssp --EEEES-CHHHHHHHHHTTSCEEEEEECCCCS-HHHHHH--HHHHHHHHHHTT--CEEECCCCS
T ss_pred --EEEEC-CHHHHHHHHHHHcCCCEEEEecccc-HHHHHH--HHHHHHHHHHcC--CeEEEecCC
Confidence 34566 5689999999999999998865432 222111 112234556667 888776654
No 58
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=53.11 E-value=1e+02 Score=25.84 Aligned_cols=121 Identities=12% Similarity=0.055 Sum_probs=65.9
Q ss_pred CCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKY 128 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~ 128 (256)
++.++..++++.++.+.+++..++.-...+++|+|+...+.. + +.++.++.+
T Consensus 5 ~~~~~~~~~tlGFd~~~~vral~~~g~~~~d~ViLv~~~~~~----------------~------------~~~~A~~~i 56 (244)
T 2wte_A 5 HHHMKSYFVTMGFNETFLLRLLNETSAQKEDSLVIVVPSPIV----------------S------------GTRAAIESL 56 (244)
T ss_dssp ---CCEEEECCCSCCHHHHHHHHHTTCCTTSEEEEEEESSCC----------------H------------HHHHHHHHH
T ss_pred hhhhhhheeccCcChHHHHHHHHHhCCCCCCEEEEEeCCCcc----------------h------------hHHHHHHHH
Confidence 356889999999999888887777666678899997764421 0 122233333
Q ss_pred HHHhhcCC-CcEEEEEEEcCChHHH---HHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 129 IRLCNDAK-VTVETMLVESKATAKA---ILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 129 ~~~~~~~g-v~v~~~lv~g~~v~ea---Il~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
.+.+...| ++++...+...++.+. |.+.+.+..-+.+|--+.|...+ .+ +.....++.... +-|.+...
T Consensus 57 ~~~l~~~~~i~~e~~~vd~~df~~~v~~i~~~i~~~~~~iivnlsGG~Ril---~l-~~l~A~~l~~~~--~~v~~~~E 129 (244)
T 2wte_A 57 RAQISRLNYPPPRIYEIEITDFNLALSKILDIILTLPEPIISDLTMGMRMI---NT-LILLGIIVSRKR--FTVYVRDE 129 (244)
T ss_dssp HHHHHHHTCCCEEEEEECCCSHHHHHHHHHHHHTTSCSSEEEECSSSCHHH---HH-HHHHHHHHTTCC--EEEEEECT
T ss_pred HHHHHHcCCCceEEEEECCccHHHHHHHHHHHHhhcCCcEEEEecCCchHH---HH-HHHHHHHhhcCc--eEEEEEec
Confidence 33333224 5788777776665444 44444443226666344333221 11 222234444444 66666554
No 59
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=52.33 E-value=79 Score=29.23 Aligned_cols=115 Identities=12% Similarity=0.035 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+.. ...|..|.++++........+ .. ...-..+-|..+.+.+...|++.. +
T Consensus 18 n~aL~~A~~~----~~~v~~vfi~dp~~~~~~~~~--------~~--------r~~fl~~sL~~L~~~L~~~G~~L~--v 75 (484)
T 1owl_A 18 NIGLAAARAQ----SAQLIGLFCLDPQILQSADMA--------PA--------RVAYLQGCLQELQQRYQQAGSRLL--L 75 (484)
T ss_dssp CHHHHHHHHH----CSCEEEEEEECHHHHTCTTCC--------HH--------HHHHHHHHHHHHHHHHHHHTSCEE--E
T ss_pred hHHHHHHHhc----CCCEEEEEEEcchhhcCCCCC--------HH--------HHHHHHHHHHHHHHHHHHCCCeEE--E
Confidence 4566666653 236889999986421100111 11 111222344444444445577653 3
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKK 206 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~ 206 (256)
+.| ++.+.|.+++++.+++.|+.-..-... .+.. -......+.... |+|..+.....
T Consensus 76 ~~g-~~~~~l~~l~~~~~~~~v~~~~~~~p~-~~~r--d~~v~~~l~~~g--i~~~~~~~~~l 132 (484)
T 1owl_A 76 LQG-DPQHLIPQLAQQLQAEAVYWNQDIEPY-GRDR--DGQVAAALKTAG--IRAVQLWDQLL 132 (484)
T ss_dssp EES-CHHHHHHHHHHHTTCSEEEEECCCSHH-HHHH--HHHHHHHHHHTT--CEEEEECCSSS
T ss_pred EeC-CHHHHHHHHHHHcCCCEEEEeccCChh-HHHH--HHHHHHHHHHcC--cEEEEecCCEE
Confidence 456 568999999999999999885543322 2111 122234445567 89988765433
No 60
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=50.00 E-value=70 Score=29.98 Aligned_cols=105 Identities=9% Similarity=-0.026 Sum_probs=60.1
Q ss_pred CCCCCeEEEEecCCH----HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCcc-ccccccccCHHHHHHHHHHHHHHHHH
Q 025234 49 DAAASDVYVAVGKDD----LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPV-GRLARSQLNQEQVRVYVNEENNRRRN 123 (256)
Q Consensus 49 ~~~~~~ILVaVD~S~----~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~-g~~~~~~~~~e~~~~~~~~~~~~a~~ 123 (256)
.+..+.+||=.-.+- ..||..|+. .+..|..|.|+++........ +... .... ...-..+
T Consensus 36 ~~~~~~~l~WfrrDLRl~DN~AL~~A~~----~~~~v~~vfi~dp~~~~~~~~~~~~~---~~~~--------r~~Fl~~ 100 (525)
T 2j4d_A 36 RKGKGVTILWFRNDLRVLDNDALYKAWS----SSDTILPVYCLDPRLFHTTHFFNFPK---TGAL--------RGGFLME 100 (525)
T ss_dssp CTTCCEEEEEESSCCCSTTCHHHHHHHH----TCSEEEEEEEECGGGGSBCTTTCCBS---SCHH--------HHHHHHH
T ss_pred CCCCCeEEEEeCCCcCcchhHHHHHHHh----cCCcEEEEEEECchhhcccccccCCC---CCHH--------HHHHHHH
Confidence 344556666664433 667776665 345799999998753211000 0000 0111 1112233
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
-|..+.+.+...|+++. ++.| ++.+.|.+++++.+++.|+.-..-
T Consensus 101 sL~~L~~~L~~~G~~L~--v~~g-~~~~~l~~l~~~~~~~~V~~~~~~ 145 (525)
T 2j4d_A 101 CLVDLRKNLMKRGLNLL--IRSG-KPEEILPSLAKDFGARTVFAHKET 145 (525)
T ss_dssp HHHHHHHHHHHTTCCCE--EEES-CHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHHHHHHHHcCCeEE--EEeC-CHHHHHHHHHHHcCCCEEEEeccC
Confidence 45555555555677653 3456 568999999999999999886543
No 61
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=48.81 E-value=29 Score=32.20 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhcCCCcEEEEEE--EcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 123 NLLQKYIRLCNDAKVTVETMLV--ESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 123 ~~L~~~~~~~~~~gv~v~~~lv--~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
+-|..+.+.+...|++.....+ .| ++.+.|.+++++.+++.|+.-..-... .+.. -..|.+.+.. |+|..
T Consensus 56 ~sL~~L~~~L~~~G~~L~v~~~~~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~-~~~r-----d~~v~~~l~~-i~~~~ 127 (471)
T 1dnp_A 56 AQLNGLQIALAEKGIPLLFREVDDFV-ASVEIVKQVCAENSVTHLFYNYQYEVN-ERAR-----DVEVERALRN-VVCEG 127 (471)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSSHH-HHHHHHHHHHHHHTCCEEEEECCCSHH-HHHH-----HHHHHHHCTT-SEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEccCCC-CHHHHHHHHHHHcCCCEEEEecccCch-HHHH-----HHHHHHHhcC-cEEEE
Confidence 3455555555556877644222 45 458999999999999998885543321 1111 1344444443 67776
Q ss_pred EeCC
Q 025234 201 VHDG 204 (256)
Q Consensus 201 V~~~ 204 (256)
+...
T Consensus 128 ~~~~ 131 (471)
T 1dnp_A 128 FDDS 131 (471)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 6544
No 62
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=44.72 E-value=17 Score=28.05 Aligned_cols=51 Identities=10% Similarity=0.012 Sum_probs=33.9
Q ss_pred hHHHHHHHhhhcCCCEEEEcCc----C-CCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 149 TAKAILDLISVANVTSLVMGTK----L-SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 149 v~eaIl~~a~e~~aDLIVmGs~----~-~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
..+.|.+++++++++.||+|-- | .+...... -..++.+-+..+ +||..+-+
T Consensus 41 ~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~--~~f~~~L~~~~~--lpV~~~DE 96 (138)
T 1nu0_A 41 DWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARA--RKFANRIHGRFG--VEVKLHDE 96 (138)
T ss_dssp CHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHH--HHHHHHHHHHHC--CCEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHH--HHHHHHHHHHhC--CCEEEEcC
Confidence 3789999999999999999932 1 12111110 133455655667 99999975
No 63
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=44.34 E-value=99 Score=28.00 Aligned_cols=111 Identities=10% Similarity=0.046 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEE
Q 025234 64 LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETML 143 (256)
Q Consensus 64 ~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~l 143 (256)
..||..|+. .+ .|..|.++++.... . + . ....-..+-|..+.+.+...|++.. +
T Consensus 17 n~aL~~A~~----~~-~v~~vfi~d~~~~~--~-~--------~--------~r~~fl~~sL~~l~~~L~~~g~~l~--~ 70 (420)
T 2j07_A 17 HPALLEALA----RG-PVVGLVVLDPNNLK--T-T--------P--------RRRAWFLENVRALREAYRARGGALW--V 70 (420)
T ss_dssp CHHHHHHHT----TS-CEEEEEEECHHHHS--S-C--------H--------HHHHHHHHHHHHHHHHHHHTTCCEE--E
T ss_pred cHHHHHHHh----CC-CEEEEEEECCcccc--C-C--------H--------HHHHHHHHHHHHHHHHHHHCCCeEE--E
Confidence 345555543 23 78899998864211 1 1 0 1111223345555555555677653 4
Q ss_pred EEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCccccc
Q 025234 144 VESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVD 209 (256)
Q Consensus 144 v~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~~~~ 209 (256)
+.| ++.+.|.+++++.+++.|+.-..-... .+.. ...|.+.+. |+|..+........
T Consensus 71 ~~g-~~~~~l~~l~~~~~~~~v~~~~~~~~~-~~~r-----d~~v~~~l~--i~~~~~~~~~l~~~ 127 (420)
T 2j07_A 71 LEG-LPWEKVPEAARRLKAKAVYALTSHTPY-GRYR-----DGRVREALP--VPLHLLPAPHLLPP 127 (420)
T ss_dssp EES-CHHHHHHHHHHHTTCSEEEEECCCSHH-HHHH-----HHHHHHHCS--SCEEEECCCCSSCT
T ss_pred EeC-CHHHHHHHHHHHcCCCEEEEecccChh-HHHH-----HHHHHHHcC--CeEEEeCCCEEEcc
Confidence 456 568999999999999999885543322 2111 134444446 99988876554443
No 64
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=43.42 E-value=1.2e+02 Score=23.95 Aligned_cols=37 Identities=5% Similarity=-0.157 Sum_probs=23.1
Q ss_pred CCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 50 AAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 50 ~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
|+.++|+|++.|.- -.++-+.+... +.++..+|+...
T Consensus 1 m~~~~v~v~lSGG~DS~~ll~ll~~~---~~~v~~~~~~~~ 38 (219)
T 3bl5_A 1 MKKEKAIVVFSGGQDSTTCLLWALKE---FEEVETVTFHYN 38 (219)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHH---CSEEEEEEEESS
T ss_pred CCCCCEEEEccCcHHHHHHHHHHHHc---CCceEEEEEeCC
Confidence 34578999999888 33333333322 468888998754
No 65
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=43.10 E-value=1e+02 Score=28.31 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=43.2
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhh---hcCC-CEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 125 LQKYIRLCNDAKVTVETMLVESKATAKAILDLIS---VANV-TSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~---e~~a-DLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
+++....+...|++++..+.......+.+.++++ +.++ +.||.|+.+...+. .-|.-.++ +||+-
T Consensus 281 ~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lp---------gvva~~t~--~PVIg 349 (425)
T 2h31_A 281 CEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLG---------PVMSGNTA--YPVIS 349 (425)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHH---------HHHHHHCS--SCEEE
T ss_pred HHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchH---------hHHhccCC--CCEEE
Confidence 3344445556788888877755444566555554 4567 57777765543322 34555778 99999
Q ss_pred EeCC
Q 025234 201 VHDG 204 (256)
Q Consensus 201 V~~~ 204 (256)
||..
T Consensus 350 vP~~ 353 (425)
T 2h31_A 350 CPPL 353 (425)
T ss_dssp CCCC
T ss_pred eeCc
Confidence 9974
No 66
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=42.63 E-value=1.2e+02 Score=25.89 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=69.9
Q ss_pred EEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 56 YVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 56 LVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
=||..+-. ...++..+++|+..|-.|=.==-++... ..|+-.. .++++++.. ...-.+..+..+|+
T Consensus 32 NIACGfHAGDp~~M~~tv~lA~~~gV~IGAHPgypDl~----GFGRR~m-~~s~~el~~-------~v~YQiGAL~a~a~ 99 (255)
T 1v6t_A 32 NVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLM----GFGRRYM-KLTPEEARN-------YILYQVGALYAFAK 99 (255)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHTTCEEEEECCCSCTT----TTTCSCC-CCCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhccccCCCHHHHHHHHHHHHHcCCeEecCCCCCccc----CCCCCCC-CCCHHHHHH-------HHHHHHHHHHHHHH
Confidence 34555544 6667777777777776654322222221 1232111 234444332 22233444555666
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
..|.++..+--.| ...+++|++.+...+.+|+++|-. ||......+... +|++-
T Consensus 100 ~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-----------gs~~~~~A~~~G--l~~~~ 162 (255)
T 1v6t_A 100 AEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS-----------NSRVADIAEEMG--LKVAH 162 (255)
T ss_dssp HTTCCEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET-----------TCHHHHHHHHHT--CCEEE
T ss_pred HcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-----------ChHHHHHHHHcC--CcEEE
Confidence 7788877655443 345789999999999999999842 455566666666 77653
No 67
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=41.47 E-value=1.3e+02 Score=23.93 Aligned_cols=34 Identities=6% Similarity=-0.065 Sum_probs=23.5
Q ss_pred CeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 53 ~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
.+|+|++.|.. -.+|-+.+..+. .++.++|+-..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~---~~v~~v~vd~g 79 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIR---PDIPVILTDTG 79 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHS---TTCEEEEEECS
T ss_pred CCEEEEecCCHHHHHHHHHHHHhC---CCCeEEEeeCC
Confidence 58999999888 555555554443 45788888653
No 68
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=41.40 E-value=12 Score=29.22 Aligned_cols=54 Identities=9% Similarity=0.061 Sum_probs=35.2
Q ss_pred ChHHHHHHHhhhcCCCEEEEcCcC-----CCccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 148 ATAKAILDLISVANVTSLVMGTKL-----SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 148 ~v~eaIl~~a~e~~aDLIVmGs~~-----~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
...+.|.+++++++++.||+|--- .+...... -..+..+....+ +||..|.+..
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~a--r~f~~~L~~~~~--lpV~~vDEr~ 100 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEAS--QTFAKVLETTYN--VPVVLWDERL 100 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHH--HHHHHHHHHHHC--SCEEEECCSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHH--HHHHHHHHHhhC--CCEEEecCCC
Confidence 458999999999999999999431 11111000 123345555567 9999997644
No 69
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=41.14 E-value=59 Score=28.24 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=36.9
Q ss_pred HHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHh-hCCCcceEEEEeCCc
Q 025234 127 KYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKK-NAPDYCEVTIVHDGK 205 (256)
Q Consensus 127 ~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~-~a~~~cPVLVV~~~~ 205 (256)
++...+...++.+.....+...-...+.+.+...++|+||+..- .+.+ ..++..+++ ... +|+.+||-|.
T Consensus 46 ~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTv------~~v~~~l~~~~~~--~pl~iIP~GT 116 (337)
T 2qv7_A 46 DALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGTL------NEVVNGIAEKPNR--PKLGVIPMGT 116 (337)
T ss_dssp HHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHHH------HHHHHHHTTCSSC--CEEEEEECSS
T ss_pred HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-chHH------HHHHHHHHhCCCC--CcEEEecCCc
Confidence 33344444576665544333222445555555567887776432 2211 234444432 345 8999999865
No 70
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=38.93 E-value=2.1e+02 Score=25.49 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEec
Q 025234 50 AAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFS 88 (256)
Q Consensus 50 ~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~ 88 (256)
...++|+|++.|.. -.++-+.+ +..+-+|..||+..
T Consensus 15 ~~~~kVvVa~SGGvDSsv~a~lL---~~~G~~V~~v~~~~ 51 (380)
T 2der_A 15 ETAKKVIVGMSGGVDSSVSAWLL---QQQGYQVEGLFMKN 51 (380)
T ss_dssp --CCEEEEECCSCSTTHHHHHHH---HTTCCEEEEEEEEC
T ss_pred CCCCEEEEEEEChHHHHHHHHHH---HHcCCeEEEEEEEc
Confidence 34678999999877 33333333 33478999999864
No 71
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=37.75 E-value=99 Score=26.79 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=36.8
Q ss_pred HhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHh---hCCCcceEEEEeCCcc
Q 025234 131 LCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKK---NAPDYCEVTIVHDGKK 206 (256)
Q Consensus 131 ~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~---~a~~~cPVLVV~~~~~ 206 (256)
.+...++++.........-...+.+.+...++|+||+.. |.+. + ..++..+.+ ... +|+.++|-|..
T Consensus 52 ~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~G-GDGT----l--~~v~~~l~~~~~~~~--~plgiiP~Gt~ 121 (332)
T 2bon_A 52 LLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGG-GDGT----I--NEVSTALIQCEGDDI--PALGILPLGTA 121 (332)
T ss_dssp HHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEE-SHHH----H--HHHHHHHHHCCSSCC--CEEEEEECSSS
T ss_pred HHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEc-cchH----H--HHHHHHHhhcccCCC--CeEEEecCcCH
Confidence 344467776655444222234455444445788776543 2221 1 355566664 345 89999998753
No 72
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=36.88 E-value=1.4e+02 Score=27.22 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.2
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
...+.++|++.++|.|+.|.++.
T Consensus 100 ~~~l~~~A~~~Ga~~IatGh~~~ 122 (413)
T 2nz2_A 100 ARKQVEIAQREGAKYVSHGATGK 122 (413)
T ss_dssp HHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHcCCCEEEECCcCc
Confidence 46788999999999999999974
No 73
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=36.79 E-value=1.7e+02 Score=25.39 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=56.8
Q ss_pred hhhhhcccccCCccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHH
Q 025234 31 EIVEIGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108 (256)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e 108 (256)
++.++++.++-.++.+.. ...+||+|-+.++. ..+|-++...- ..+++|.+| +.....
T Consensus 85 ~l~~la~~l~m~~~l~~~-~~~~ri~vl~Sg~g~nl~~ll~~~~~g-~l~~~I~~V--isn~~~---------------- 144 (302)
T 3o1l_A 85 AFTPIAEEFSMDWRITDS-AQKKRVVLMASRESHCLADLLHRWHSD-ELDCDIACV--ISNHQD---------------- 144 (302)
T ss_dssp HHHHHHHHHTCEEEEEET-TSCCEEEEEECSCCHHHHHHHHHHHTT-CSCSEEEEE--EESSST----------------
T ss_pred HHHHHHHHhCCeeeeccc-CCCcEEEEEEeCCchhHHHHHHHHHCC-CCCcEEEEE--EECcHH----------------
Confidence 344455554423322322 23578888888777 66666665432 234566554 433210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEc-CC--hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVES-KA--TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 109 ~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~g-~~--v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
++ ..+...|+++...-... +. -.+++++..++.++|+||+..-.+
T Consensus 145 ------------~~-------~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym~ 192 (302)
T 3o1l_A 145 ------------LR-------SMVEWHDIPYYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYMQ 192 (302)
T ss_dssp ------------TH-------HHHHTTTCCEEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCCS
T ss_pred ------------HH-------HHHHHcCCCEEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhhh
Confidence 00 11345688865431111 11 135799999999999999988654
No 74
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=36.72 E-value=77 Score=27.12 Aligned_cols=64 Identities=8% Similarity=0.034 Sum_probs=35.9
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHh-hCCCcceEEEEeCCc
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKK-NAPDYCEVTIVHDGK 205 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~-~a~~~cPVLVV~~~~ 205 (256)
+...++.++....+...-+..+.+.+.+ ++|+||+..- .+.+ ..+...+.. ... +|+.++|-|.
T Consensus 35 l~~~~~~~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG-DGTl------~~v~~~l~~~~~~--~~l~iiP~Gt 99 (304)
T 3s40_A 35 LAAAFPDLHILHTKEQGDATKYCQEFAS-KVDLIIVFGG-DGTV------FECTNGLAPLEIR--PTLAIIPGGT 99 (304)
T ss_dssp HHHHCSEEEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC-HHHH------HHHHHHHTTCSSC--CEEEEEECSS
T ss_pred HHHcCCeEEEEEccCcchHHHHHHHhhc-CCCEEEEEcc-chHH------HHHHHHHhhCCCC--CcEEEecCCc
Confidence 3335777766555543335566666543 7887776432 2211 233344443 245 8999999865
No 75
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=36.17 E-value=1.3e+02 Score=22.42 Aligned_cols=64 Identities=5% Similarity=-0.039 Sum_probs=40.7
Q ss_pred cCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 134 DAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 134 ~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
..|+++...=. ..+.+.|++.+.+.++|+|.+......... .+ ..+.+.+-+....+++|++--
T Consensus 29 ~~G~~Vi~lG~--~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~-~~--~~~i~~l~~~g~~~i~v~vGG 92 (137)
T 1ccw_A 29 NAGFNVVNIGV--LSPQELFIKAAIETKADAILVSSLYGQGEI-DC--KGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HTTCEEEEEEE--EECHHHHHHHHHHHTCSEEEEEECSSTHHH-HH--TTHHHHHHHTTCTTCEEEEEE
T ss_pred HCCCEEEECCC--CCCHHHHHHHHHhcCCCEEEEEecCcCcHH-HH--HHHHHHHHhcCCCCCEEEEEC
Confidence 46887664333 334799999999999999999887643322 12 355555544332237776543
No 76
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.42 E-value=35 Score=24.87 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcC
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 171 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~ 171 (256)
-|.+|.++.+..|+++.+.-. -....+.|-++++++++..+|+-...
T Consensus 14 tlrkfkdiikkngfkvrtvrs-pqelkdsieelvkkynativvvvvdd 60 (134)
T 2l69_A 14 TLRKFKDIIKKNGFKVRTVRS-PQELKDSIEELVKKYNATIVVVVVDD 60 (134)
T ss_dssp HHHHHHHHHHHTTCEEEEECS-HHHHHHHHHHHTTCCCCEEEEEECSS
T ss_pred HHHHHHHHHHhcCceEEEecC-HHHHHHHHHHHHHHhCCeEEEEEEcc
Confidence 455666666677887765322 22345677888888888888876654
No 77
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=33.97 E-value=1.4e+02 Score=26.56 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=23.9
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
.++|+|++.|.. -.++-+.+. ..+-+|..+|+...
T Consensus 9 ~~kVlVa~SGGvDSsv~a~lL~---~~G~~V~~v~~~~~ 44 (376)
T 2hma_A 9 KTRVVVGMSGGVDSSVTALLLK---EQGYDVIGIFMKNW 44 (376)
T ss_dssp GSEEEEECCSSHHHHHHHHHHH---HTTCEEEEEEEECC
T ss_pred CCeEEEEEeCHHHHHHHHHHHH---HcCCcEEEEEEECC
Confidence 468999999888 333333332 24789999998654
No 78
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=33.85 E-value=2.9e+02 Score=25.50 Aligned_cols=35 Identities=26% Similarity=0.162 Sum_probs=24.9
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
.++|+|++.|.. -.++-+.+..+ +.++.++|+-..
T Consensus 209 ~~kvvvalSGGvDSsvla~ll~~~---g~~v~av~vd~g 244 (503)
T 2ywb_A 209 KDRVLLAVSGGVDSSTLALLLAKA---GVDHLAVFVDHG 244 (503)
T ss_dssp TSEEEEEECSSHHHHHHHHHHHHH---TCEEEEEEEECS
T ss_pred CccEEEEecCCcchHHHHHHHHHc---CCeEEEEEEeCC
Confidence 379999999988 44444444444 789999998643
No 79
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=33.77 E-value=77 Score=24.64 Aligned_cols=64 Identities=13% Similarity=0.008 Sum_probs=38.3
Q ss_pred cCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 134 DAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 134 ~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
..|+++.. +-...+.+.|++.+.+.++|+|.+.......... + ..+.+.+-+...++++|++--
T Consensus 44 ~~G~eVi~--lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~-~--~~~i~~L~~~g~~~i~v~vGG 107 (161)
T 2yxb_A 44 DAGFEVVY--TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHL-M--KRLMAKLRELGADDIPVVLGG 107 (161)
T ss_dssp HTTCEEEC--CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHH-H--HHHHHHHHHTTCTTSCEEEEE
T ss_pred HCCCEEEE--CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHH-H--HHHHHHHHhcCCCCCEEEEeC
Confidence 35776542 2223457999999999999999998865433221 1 234444444322247777643
No 80
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=33.43 E-value=2.1e+02 Score=24.69 Aligned_cols=105 Identities=14% Similarity=0.130 Sum_probs=58.2
Q ss_pred chhhhhhcccccCCccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccC
Q 025234 29 SPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLN 106 (256)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~ 106 (256)
..++.++++.++-.+..+.. ...+||+|=+.++. ..+|-++...- ..+++|.+ |+.....
T Consensus 73 ~~~f~~la~~~~m~~~l~~~-~~~~ri~vl~Sg~g~~l~~ll~~~~~g-~l~~~i~~--Visn~~~-------------- 134 (292)
T 3lou_A 73 RREFEPIAERFRMQWAIHDV-AARPKVLIMVSKLEHCLADLLFRWKMG-ELKMDIVG--IVSNHPD-------------- 134 (292)
T ss_dssp HHHHHHHHHHHTCEEEEEET-TSCCEEEEEECSCCHHHHHHHHHHHHT-SSCCEEEE--EEESSST--------------
T ss_pred HHHHHHHHHhcCcEEEeecc-CCCCEEEEEEcCCCcCHHHHHHHHHcC-CCCcEEEE--EEeCcHH--------------
Confidence 34444555555433322322 34578888888777 66666665432 23456555 4443210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCC---hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 107 QEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKA---TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 107 ~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~g~~---v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
++ ..+...|+++...-..... -.+++++..++.++|+||+..-.+
T Consensus 135 --------------~~-------~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 182 (292)
T 3lou_A 135 --------------FA-------PLAAQHGLPFRHFPITADTKAQQEAQWLDVFETSGAELVILARYMQ 182 (292)
T ss_dssp --------------TH-------HHHHHTTCCEEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred --------------HH-------HHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCchh
Confidence 00 1133468887542211111 135789999999999999988654
No 81
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=32.50 E-value=1.1e+02 Score=26.13 Aligned_cols=123 Identities=15% Similarity=0.117 Sum_probs=69.5
Q ss_pred EEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 56 YVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 56 LVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
=||..+-. ...++..+++|+..|-.|=.==-++... ..|+-.. .++++++.. ...-.+..+..+|+
T Consensus 38 NIACGfHAGDp~~M~~Tv~lA~~~gV~IGAHPgypDl~----GFGRR~m-~~s~~el~~-------~v~YQiGAL~a~a~ 105 (252)
T 2x5e_A 38 NLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPDLS----GFGRRSL-ACSAEEVHA-------MVLYQIGALDAFCR 105 (252)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHTTCEEEEECCCSCTT----TTTCSCC-CCCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhccccCCCHHHHHHHHHHHHHcCCeeecCCCCCccc----CCCCCCC-CCCHHHHHH-------HHHHHHHHHHHHHH
Confidence 34555544 6667777777777776654422222221 1232111 234444332 22223444455666
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
..|.++..+--.| ...+++|++.+...+.+|+++|-. +. -||......+... +|++-
T Consensus 106 ~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~----~~----~gs~~~~~A~~~G--l~~~~ 171 (252)
T 2x5e_A 106 SLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLA----LA----DNGRELELADEAD--VPLLF 171 (252)
T ss_dssp HTTCCCCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEEC----CS----CCHHHHHHHHHHT--CCEEE
T ss_pred HcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeC----CC----CCCHHHHHHHHcC--CcEEE
Confidence 6777766544333 345789999999999999999943 00 1455567777777 77763
No 82
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=32.20 E-value=1.1e+02 Score=26.96 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCCcEEEEEEEcCCh---HHHHHHHhhhcCCCEEE-EcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 126 QKYIRLCNDAKVTVETMLVESKAT---AKAILDLISVANVTSLV-MGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 126 ~~~~~~~~~~gv~v~~~lv~g~~v---~eaIl~~a~e~~aDLIV-mGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
++....+...|+.+...+..|.+. .+.+.+.+++.++|+|| +|.-. . +.++..+.-... +|++.|
T Consensus 48 ~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGs-------v--~D~aK~iA~~~~--~p~i~I 116 (370)
T 1jq5_A 48 HTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGK-------T--LDTAKAVADELD--AYIVIV 116 (370)
T ss_dssp HHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH-------H--HHHHHHHHHHHT--CEEEEE
T ss_pred HHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChH-------H--HHHHHHHHHhcC--CCEEEe
Confidence 334444444677765444445433 34566777888999888 55411 1 244444444446 899999
Q ss_pred eC
Q 025234 202 HD 203 (256)
Q Consensus 202 ~~ 203 (256)
|.
T Consensus 117 PT 118 (370)
T 1jq5_A 117 PT 118 (370)
T ss_dssp ES
T ss_pred cc
Confidence 97
No 83
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=32.14 E-value=2.4e+02 Score=24.14 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=57.0
Q ss_pred hhhhhhcccccCCccccCcCCCCCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCH
Q 025234 30 PEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQ 107 (256)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~ 107 (256)
.++.++++.++=.++.+.. ...+||+|-+.++. ..+|-++... ...+++|.+| +.....
T Consensus 69 ~~f~~la~~l~m~~~l~~~-~~~~ri~vl~Sg~g~~l~~ll~~~~~-g~l~~~i~~V--isn~~~--------------- 129 (286)
T 3n0v_A 69 AGLAERSEAFGMAFELTAP-NHRPKVVIMVSKADHCLNDLLYRQRI-GQLGMDVVAV--VSNHPD--------------- 129 (286)
T ss_dssp HHHHHHHGGGTCEEEEECT-TCCCEEEEEESSCCHHHHHHHHHHHT-TSSCCEEEEE--EESSST---------------
T ss_pred HHHHHHHHHcCCEEEeecC-CCCcEEEEEEeCCCCCHHHHHHHHHC-CCCCcEEEEE--EeCcHH---------------
Confidence 3444555655433322322 33568888888777 6666666532 2234565554 433210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEEcCC---hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 108 EQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVESKA---TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 108 e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~g~~---v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
++ ..+...|+++...-....+ -.+++++..++.++|+||+..-.+
T Consensus 130 -------------~~-------~~A~~~gIp~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~~ 177 (286)
T 3n0v_A 130 -------------LE-------PLAHWHKIPYYHFALDPKDKPGQERKVLQVIEETGAELVILARYMQ 177 (286)
T ss_dssp -------------TH-------HHHHHTTCCEEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCCS
T ss_pred -------------HH-------HHHHHcCCCEEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEeccccc
Confidence 00 1133468886542211111 134789999999999999988654
No 84
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=32.01 E-value=1.3e+02 Score=25.72 Aligned_cols=122 Identities=15% Similarity=0.107 Sum_probs=66.8
Q ss_pred eEEEEecCCHHHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 54 DVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 54 ~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
+|-++--..+...++..+++|+..|-.|=.==-++... ..|+-.. .++++++.. ...-.+..+..+|+
T Consensus 27 NIACGfHAGDp~~M~~Tv~lA~~~gV~IGAHPgypDl~----GFGRR~m-~~s~~el~~-------~v~YQiGAL~a~a~ 94 (252)
T 1xw8_A 27 NIACGFHAGDAQIMQACVREAIKNGVAIGAHPSFPDRE----NFGRSAM-QLPPETVYA-------QTLYQIGALATIAR 94 (252)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHHTCEEEEECCCC-----------CCC-CCCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHhhcccCCCHHHHHHHHHHHHHcCCeeecCCCCCccc----CCCCCCC-CCCHHHHHH-------HHHHHHHHHHHHHH
Confidence 34444333335555666666666665544321222211 1232111 233444332 22223444555666
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
..|.++..+--.| ...+++|++.+...+.+|+++|-. ||...+..+... +|++-
T Consensus 95 ~~G~~l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~-----------gs~~~~~A~~~G--l~~~~ 157 (252)
T 1xw8_A 95 AQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA-----------GSELIRAGKQYG--LTTRE 157 (252)
T ss_dssp HTTCCEEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET-----------TSHHHHHHHHTT--CCEEE
T ss_pred HcCCEeEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-----------ChHHHHHHHHcC--CcEEE
Confidence 7788877654443 334789999999999999999842 455567777777 78764
No 85
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=30.71 E-value=2.1e+02 Score=23.51 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=26.9
Q ss_pred hhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 132 CNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
+...|+++...-...-. .+++++..++.++|+||+..-++
T Consensus 54 A~~~gIp~~~~~~~~~~-~~~~~~~L~~~~~Dlivlagy~~ 93 (215)
T 3kcq_A 54 AQSYGIPTFVVKRKPLD-IEHISTVLREHDVDLVCLAGFMS 93 (215)
T ss_dssp HHHTTCCEEECCBTTBC-HHHHHHHHHHTTCSEEEESSCCS
T ss_pred HHHcCCCEEEeCcccCC-hHHHHHHHHHhCCCEEEEeCCce
Confidence 44568876532111111 37899999999999999988654
No 86
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=29.64 E-value=2.6e+02 Score=23.69 Aligned_cols=71 Identities=10% Similarity=-0.039 Sum_probs=41.2
Q ss_pred HHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 125 LQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 125 L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+.++.+.+...|+.+ +++-.+ .+++. .|.+.++|+|.++.+....+.. .-.....+....+.++||+..-.
T Consensus 151 l~~l~~~a~~lGl~~---lvev~t-~ee~~-~A~~~Gad~IGv~~r~l~~~~~---dl~~~~~l~~~v~~~~pvVaegG 221 (272)
T 3qja_A 151 LVSMLDRTESLGMTA---LVEVHT-EQEAD-RALKAGAKVIGVNARDLMTLDV---DRDCFARIAPGLPSSVIRIAESG 221 (272)
T ss_dssp HHHHHHHHHHTTCEE---EEEESS-HHHHH-HHHHHTCSEEEEESBCTTTCCB---CTTHHHHHGGGSCTTSEEEEESC
T ss_pred HHHHHHHHHHCCCcE---EEEcCC-HHHHH-HHHHCCCCEEEECCCccccccc---CHHHHHHHHHhCcccCEEEEECC
Confidence 344445555567664 344455 35544 4456799999998655333221 12556778888754477776543
No 87
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=29.49 E-value=3.1e+02 Score=24.56 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=23.3
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEec
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFS 88 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~ 88 (256)
..+++|++.|.. -.++-|.+.. .|.++..+|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~---~G~~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK---RGVSVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH---BTEEEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH---cCCcEEEEEEeC
Confidence 568999998876 3333333322 478999999974
No 88
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.83 E-value=70 Score=25.75 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=18.0
Q ss_pred CChHHHHHhhCCCcceEEEEeCC
Q 025234 182 LSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 182 GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
|+++..|-++.+ +||+-|+..
T Consensus 59 Ggta~~lr~~~~--iPVV~I~~s 79 (196)
T 2q5c_A 59 GATSDYIKKSVS--IPSISIKVT 79 (196)
T ss_dssp HHHHHHHHTTCS--SCEEEECCC
T ss_pred ChHHHHHHHhCC--CCEEEEcCC
Confidence 788888888888 999999863
No 89
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=27.76 E-value=41 Score=29.18 Aligned_cols=51 Identities=16% Similarity=0.069 Sum_probs=34.6
Q ss_pred chhhhhhcccccCCccccCcCCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEE
Q 025234 29 SPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLH 85 (256)
..|+....++|+++-=+. .+..-++||+++|.++ ..+..|...++.+++-|
T Consensus 16 ~~e~aplae~~dd~Gllv-~~~eV~kIlvaLD~t~-----~vv~eA~~~g~dlIItH 66 (278)
T 3rxy_A 16 ALEMAEMRTLPADSAVYV-ESTDLKRVMMGIDIGP-----AELLLARQLGCDGVIAH 66 (278)
T ss_dssp HHHHTTCSSCCTTCEEEE-CCSCBSEEEEESSCCH-----HHHHHHHHTTCSEEEES
T ss_pred HHHhcCcccCCCCceeee-ccccccEEEEEECCCH-----HHHHHHHHcCCCEEEEC
Confidence 344444778888665345 5667899999999998 33344444567777776
No 90
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=27.54 E-value=1.2e+02 Score=25.91 Aligned_cols=120 Identities=15% Similarity=0.057 Sum_probs=68.5
Q ss_pred EEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 025234 56 YVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCN 133 (256)
Q Consensus 56 LVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~ 133 (256)
=||..+-. ...++..+++|+..|-.|=.==-++... ..|+-.. .++++++.. ...-.+..+..+|+
T Consensus 32 NIACGfHAGDp~~M~~tv~lA~~~gV~IGAHPgypDl~----GFGRR~m-~~s~~el~~-------~v~YQiGAL~a~a~ 99 (250)
T 2dfa_A 32 NLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLV----GFGRREM-ALSPEEVYA-------DVLYQIGALSAFLK 99 (250)
T ss_dssp EEECSSSSCCHHHHHHHHHHHHHTTCEEEEECCCSCTT----TTTCSCC-CCCHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhccccCCCHHHHHHHHHHHHHcCCeEecCCCCCccc----CCCCCCC-CCCHHHHHH-------HHHHHHHHHHHHHH
Confidence 34555544 6667777777777776654322222221 1232111 234444332 22223344445556
Q ss_pred cCCCcEEEEEEEc---------CChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 134 DAKVTVETMLVES---------KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 134 ~~gv~v~~~lv~g---------~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
..|.++..+--.| ...+++|++.+...+.+|+++|-. ||......+... +|++-
T Consensus 100 ~~G~~l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~-----------gs~~~~~A~~~G--l~~~~ 162 (250)
T 2dfa_A 100 AEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP-----------GTVYEEEARKAG--LRVVL 162 (250)
T ss_dssp HTTCCCCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT-----------TSHHHHHHHHTT--CCEEE
T ss_pred HcCCEeEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC-----------ChHHHHHHHHcC--CcEEE
Confidence 6676655433332 345789999999999999999842 455567777777 77764
No 91
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=26.65 E-value=69 Score=27.41 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=36.4
Q ss_pred HHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeCCcccc
Q 025234 151 KAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVV 208 (256)
Q Consensus 151 eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~~~~ 208 (256)
+-+++.++++++|++|+.+-.... .+-..+..++.... +|++||.++.-..
T Consensus 54 ~~~~~~~~~~~pDfvI~isPN~a~-----PGP~~ARE~l~~~~--iP~IvI~D~p~~K 104 (283)
T 1qv9_A 54 EMALDIAEDFEPDFIVYGGPNPAA-----PGPSKAREMLADSE--YPAVIIGDAPGLK 104 (283)
T ss_dssp HHHHHHHHHHCCSEEEEECSCTTS-----HHHHHHHHHHHTSS--SCEEEEEEGGGGG
T ss_pred HHhhhhhhhcCCCEEEEECCCCCC-----CCchHHHHHHHhCC--CCEEEEcCCcchh
Confidence 344566689999999999876543 22355667777888 9999998765444
No 92
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=26.36 E-value=93 Score=25.07 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=23.1
Q ss_pred CeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEE
Q 025234 53 SDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 53 ~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLH 85 (256)
++|+|+|.|+- ..+++..-.+.+ .+.+++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~-~g~~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE-LDFSVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 79999999987 667776655544 477776653
No 93
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=26.32 E-value=2.7e+02 Score=23.11 Aligned_cols=38 Identities=8% Similarity=-0.186 Sum_probs=24.2
Q ss_pred CCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 52 ASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 52 ~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
+.+|+|++.|.. ..+|-+.+..+...+..+.++|+-..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg 79 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTL 79 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCS
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCC
Confidence 468999999988 44444444444322456788888543
No 94
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=26.27 E-value=1.7e+02 Score=24.13 Aligned_cols=21 Identities=19% Similarity=0.373 Sum_probs=18.0
Q ss_pred CChHHHHHhhCCCcceEEEEeCC
Q 025234 182 LSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 182 GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
|+++..|-++.+ +||+-|+..
T Consensus 71 Ggta~~Lr~~~~--iPVV~I~vs 91 (225)
T 2pju_A 71 GSNGAYLKSRLS--VPVILIKPS 91 (225)
T ss_dssp HHHHHHHHTTCS--SCEEEECCC
T ss_pred ChHHHHHHhhCC--CCEEEecCC
Confidence 788888888888 999999863
No 95
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=26.22 E-value=3.6e+02 Score=24.20 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHHHHHhhhcCCCEEEEcCcCC
Q 025234 150 AKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 150 ~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
...+.++|++.++|.|+.|.+..
T Consensus 96 ~~~L~~~A~~~G~~~IatG~~~d 118 (400)
T 1kor_A 96 AKHLVRIAEEEGAEAIAHGATGK 118 (400)
T ss_dssp HHHHHHHHHHHTCSEEECCCCTT
T ss_pred HHHHHHHHHHcCCCEEEECCCCC
Confidence 35788999999999999999875
No 96
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=25.79 E-value=1.7e+02 Score=25.76 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=41.2
Q ss_pred CcEEEEEEEcC--ChHHHHHHHhhhcCCCEEEEcCcCC-CccchhhccCChHHHHHhhCCCcceEEEEeCC
Q 025234 137 VTVETMLVESK--ATAKAILDLISVANVTSLVMGTKLS-PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 204 (256)
Q Consensus 137 v~v~~~lv~g~--~v~eaIl~~a~e~~aDLIVmGs~~~-~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~ 204 (256)
-+++...+.+. .+..+.++.+. ++|+||+|-... +..--.++...+.+. +++++ +|++.|.+.
T Consensus 154 ~~i~~v~~~p~~~~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~--A~kV~v~Nl 219 (323)
T 2o2z_A 154 KKIKRVFLTPKDTKPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQST--ARKVYICNV 219 (323)
T ss_dssp SCEEEEEEESTTCCCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCC--SEEEEECCS
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCC--CCEEEEcCC
Confidence 35555555543 23566777775 689999999774 222222334677777 56788 999999875
No 97
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=25.44 E-value=2.6e+02 Score=22.38 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=23.2
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
+++++|++.|.- ..++.++.+. +.+|+.+|+...
T Consensus 2 ~~kvvv~lSGG~DS~~~l~ll~~~----~~~v~av~~~~g 37 (232)
T 2pg3_A 2 MKRAVVVFSGGQDSTTCLIQALQD----YDDVHCITFDYG 37 (232)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH----CSEEEEEEEESS
T ss_pred CCCEEEEecCcHHHHHHHHHHHHc----CCCEEEEEEECC
Confidence 478999999888 4444444432 368888888643
No 98
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=24.74 E-value=2.7e+02 Score=22.36 Aligned_cols=70 Identities=11% Similarity=0.001 Sum_probs=37.8
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChH--HHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEE
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATA--KAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIV 201 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~--eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV 201 (256)
++..+.+.+...|+.+...... .+.. ...++.....++|-||+......... .. -.-+.... +||+++
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~------~~-~~~~~~~~--iPvV~~ 95 (293)
T 3l6u_A 26 LINAFKAEAKANKYEALVATSQ-NSRISEREQILEFVHLKVDAIFITTLDDVYIG------SA-IEEAKKAG--IPVFAI 95 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS-SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH------HH-HHHHHHTT--CCEEEE
T ss_pred HHHHHHHHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEecCChHHHH------HH-HHHHHHcC--CCEEEe
Confidence 3334444455567766543332 2322 24555566689999998654332211 11 13345567 999998
Q ss_pred eC
Q 025234 202 HD 203 (256)
Q Consensus 202 ~~ 203 (256)
-.
T Consensus 96 ~~ 97 (293)
T 3l6u_A 96 DR 97 (293)
T ss_dssp SS
T ss_pred cC
Confidence 54
No 99
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=24.63 E-value=1.7e+02 Score=27.36 Aligned_cols=35 Identities=20% Similarity=0.107 Sum_probs=24.3
Q ss_pred CeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 53 ~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
++|+|++.|.- -.++-+.+..+ .+.+++++||-..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~--~G~~v~av~vd~g 266 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKA--IGDQLVCVLVDTG 266 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHH--HGGGEEEEEECCS
T ss_pred CeEEEEEecCcCHHHHHHHHHHH--hCCeEEEEEeccC
Confidence 88999999988 44444444333 3578999998543
No 100
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=23.76 E-value=1e+02 Score=25.29 Aligned_cols=33 Identities=6% Similarity=-0.064 Sum_probs=24.3
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEE
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLH 85 (256)
.++|+|+|.|+- -.+++..-.+.+ .|.+|+++-
T Consensus 4 ~k~IllgvTGaiaa~k~~~ll~~L~~-~g~eV~vv~ 38 (209)
T 3zqu_A 4 PERITLAMTGASGAQYGLRLLDCLVQ-EEREVHFLI 38 (209)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHH-TTCEEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 589999999998 667776644443 588887764
No 101
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=23.76 E-value=2.9e+02 Score=22.63 Aligned_cols=64 Identities=9% Similarity=-0.080 Sum_probs=33.4
Q ss_pred HHhhcCCCcEEEEEEEcCChH--HHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 130 RLCNDAKVTVETMLVESKATA--KAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 130 ~~~~~~gv~v~~~lv~g~~v~--eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
+.+...|+.+...... .+.. ..+++.....++|-||+.......... . -.-+.... +||+++-.
T Consensus 26 ~~a~~~g~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~------~-~~~~~~~~--iPvV~~~~ 91 (313)
T 3m9w_A 26 KKAESLGAKVFVQSAN-GNEETQMSQIENMINRGVDVLVIIPYNGQVLSN------V-VKEAKQEG--IKVLAYDR 91 (313)
T ss_dssp HHHHHTSCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH------H-HHHHHTTT--CEEEEESS
T ss_pred HHHHHcCCEEEEECCC-CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH------H-HHHHHHCC--CeEEEECC
Confidence 3344457665443322 2322 245555666788888887654322111 1 12344556 88888854
No 102
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.63 E-value=2.8e+02 Score=22.97 Aligned_cols=63 Identities=8% Similarity=-0.015 Sum_probs=38.5
Q ss_pred cCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEe
Q 025234 134 DAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH 202 (256)
Q Consensus 134 ~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~ 202 (256)
..|+++...=.. -+.+.|++.+.+.++|+|.+.......... + ..+.+.+-+..+ .|||++--
T Consensus 149 ~~G~~Vi~LG~~--vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~-~--~~~i~~l~~~~~-~~~v~vGG 211 (258)
T 2i2x_B 149 ANGYNVVDLGRD--VPAEEVLAAVQKEKPIMLTGTALMTTTMYA-F--KEVNDMLLENGI-KIPFACGG 211 (258)
T ss_dssp HTTCEEEEEEEE--CCSHHHHHHHHHHCCSEEEEECCCTTTTTH-H--HHHHHHHHTTTC-CCCEEEES
T ss_pred HCCCEEEECCCC--CCHHHHHHHHHHcCCCEEEEEeeccCCHHH-H--HHHHHHHHhcCC-CCcEEEEC
Confidence 468876543332 347999999999999999998764433221 1 133344433333 37777754
No 103
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.18 E-value=87 Score=22.85 Aligned_cols=56 Identities=11% Similarity=0.077 Sum_probs=32.3
Q ss_pred hcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 133 NDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 133 ~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
...|++++..-..-+. +-+.+ .++|+|++|.+=+..+. .......... +||.+|+.
T Consensus 31 ~~~gi~v~i~a~~~~~----~~~~~--~~~DvvLLgPQV~y~~~-------~ik~~~~~~~--ipV~vI~~ 86 (108)
T 3nbm_A 31 NLTEVRVIANSGAYGA----HYDIM--GVYDLIILAPQVRSYYR-------EMKVDAERLG--IQIVATRG 86 (108)
T ss_dssp HHHTCSEEEEEEETTS----CTTTG--GGCSEEEECGGGGGGHH-------HHHHHHTTTT--CEEEECCH
T ss_pred HHCCCceEEEEcchHH----HHhhc--cCCCEEEEChHHHHHHH-------HHHHHhhhcC--CcEEEeCH
Confidence 3357777665433222 22333 36899999986543322 1234454556 99999975
No 104
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=22.84 E-value=3.1e+02 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=18.9
Q ss_pred ChHHHHHHHhhhc-CCCEEEEcCcCCC
Q 025234 148 ATAKAILDLISVA-NVTSLVMGTKLSP 173 (256)
Q Consensus 148 ~v~eaIl~~a~e~-~aDLIVmGs~~~~ 173 (256)
...+++.++++.. ..+.|++|.|..-
T Consensus 143 ~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 143 NMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp CHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred cHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 4556777777663 6789999999753
No 105
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=22.83 E-value=61 Score=27.54 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.0
Q ss_pred cccccCC-ccccCcCCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEE
Q 025234 36 GEDHSRS-IGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVH 85 (256)
Q Consensus 36 ~~~~~~~-~~~~~~~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLH 85 (256)
.++|+++ ++--+.+..-++|++++|.++ ..++.| ...++.+.+.|
T Consensus 21 a~~~D~~GL~vG~~~~~V~~I~~alD~t~-~vi~eA----i~~gadlIitH 66 (267)
T 2fyw_A 21 SMEGDSRGLQIGTLDKGIQRVMVALDIRE-ETVAEA----IEKGVDLIIVK 66 (267)
T ss_dssp SCTTCCCEEEESCSSSBCSEEEEESCCCH-HHHHHH----HHTTCSEEEES
T ss_pred cCCCCCCeeEeCCCcCccCEEEEEEcCCH-HHHHHH----HHCCCCEEEEC
Confidence 4567633 322233456899999999998 222333 33578888887
No 106
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=22.67 E-value=1.8e+02 Score=23.56 Aligned_cols=113 Identities=7% Similarity=-0.017 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCCEEEEEEEecCCCCCCCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEEE
Q 025234 66 VLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKVTVETMLVE 145 (256)
Q Consensus 66 AL~~Al~lA~~~~a~l~LLHV~~~~~~~~~~~g~~~~~~~~~e~~~~~~~~~~~~a~~~L~~~~~~~~~~gv~v~~~lv~ 145 (256)
.++.+++.|...|++.+.+++.+... .+ . .+..+...+.|.++.+.+...|+++-..-..
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~--------~~-----~-------~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~ 144 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMD--------EE-----P-------VRYISQLARRIRQVAVELLPLGMRVGLEYVG 144 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEES--------SC-----H-------HHHHHHHHHHHHHHHHHHGGGTCEEEEECCC
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCC--------Cc-----c-------hhhHHHHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 45668888888999887766543211 00 0 1123345567777778887788875444321
Q ss_pred -----------cCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 146 -----------SKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 146 -----------g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
..+ .+.+.++++..+.+.|=+-- .. . .+...|.....+++...+.+..+=+++
T Consensus 145 ~~~~~~~~~~~~~~-~~~~~~l~~~v~~~~vg~~~--D~-~-h~~~~g~~~~~~~~~~~~~i~~vHl~D 208 (281)
T 3u0h_A 145 PHHLRHRRYPFVQS-LADLKTFWEAIGAPNVGALV--DS-Y-HWYTAGEHEDDLAQLPPEKVVYVHIND 208 (281)
T ss_dssp CGGGCCSSEECCCS-HHHHHHHHHHHCCTTEEEEE--EH-H-HHHHTTCCHHHHHTSCGGGEEEEEECB
T ss_pred ccccccccccccCC-HHHHHHHHHHcCCCCeeEEe--eh-h-HHHHcCCCHHHHHhcCcccEEEEEecC
Confidence 123 56677777765543221110 00 0 111224445556665543355555554
No 107
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=22.54 E-value=85 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=28.2
Q ss_pred cccCCccccCcCCCCCeEEEEecCCHHHHHHHHHHHhcCCCCEEEEEEE
Q 025234 38 DHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHV 86 (256)
Q Consensus 38 ~~~~~~~~~~~~~~~~~ILVaVD~S~~~AL~~Al~lA~~~~a~l~LLHV 86 (256)
+|+++==+.+.+..-++|++++|.++ ..++.| ...++.+.+.|=
T Consensus 21 ~~d~~GL~v~~~~~V~~I~~~lD~t~-~vi~eA----i~~~adlIitHH 64 (247)
T 1nmo_A 21 DYAPNGLQVEGKETVQKIVTGVTASQ-ALLDEA----VRLGADAVIVHH 64 (247)
T ss_dssp CSSCCEEEECCCSBCCEEEEEEECCH-HHHHHH----HHTTCSEEEEEE
T ss_pred CcCCCeeEECCCCccCEEEEEEcCCH-HHHHHH----HhCCCCEEEECC
Confidence 66633213344456899999999998 223333 336788888873
No 108
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=22.30 E-value=1.2e+02 Score=23.27 Aligned_cols=64 Identities=14% Similarity=0.168 Sum_probs=32.4
Q ss_pred cCCCcEEEEEEEcC-ChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEEEeC
Q 025234 134 DAKVTVETMLVESK-ATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 134 ~~gv~v~~~lv~g~-~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
..|++++..-+... + ...|+..+ .++|.||+|+....+. +-. -..-..+........+|.++-.
T Consensus 31 ~~g~~v~~~~~~~~~~-~~~~~~~~--~~~d~ii~Gspty~g~--~p~-~~~l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 31 KTGVGVDVVDLGAAVD-LQELRELV--GRCTGLVIGMSPAASA--ASI-QGALSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HTTCEEEEEESSSCCC-HHHHHHHH--HTEEEEEEECCBTTSH--HHH-HHHHHHHHHHCCTTSEEEEECC
T ss_pred HCCCeEEEEECcCcCC-HHHHHHHH--HhCCEEEEEcCcCCCC--ccH-HHHHHHHHhhcccCCEEEEEEc
Confidence 35776554333323 3 45555444 3689999999876532 110 1122333333222367777754
No 109
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=22.05 E-value=2.6e+02 Score=21.22 Aligned_cols=37 Identities=19% Similarity=0.097 Sum_probs=27.7
Q ss_pred CCCCeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEE
Q 025234 50 AAASDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHV 86 (256)
Q Consensus 50 ~~~~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV 86 (256)
...+.++|++..|. ..-+..+++.|+..|++++++.-
T Consensus 85 ~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 85 LRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTD 122 (187)
T ss_dssp CCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeC
Confidence 35688999999998 33344466788888998888853
No 110
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=21.69 E-value=3.2e+02 Score=23.31 Aligned_cols=35 Identities=20% Similarity=0.114 Sum_probs=23.3
Q ss_pred CeEEEEecCCH-HHHHHHHHHHhcCCCCEEEEEEEecC
Q 025234 53 SDVYVAVGKDD-LHVLKWALDHAVSPGARIYLVHVFSP 89 (256)
Q Consensus 53 ~~ILVaVD~S~-~~AL~~Al~lA~~~~a~l~LLHV~~~ 89 (256)
++|+|++.|.. -.++-+.+..+ .+.++..+|+-..
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~--~g~~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKA--IGDRLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHH--HGGGEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHh--hCCCEEEEEEcCC
Confidence 68999999888 43443333333 2567899998653
No 111
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=21.47 E-value=3.8e+02 Score=22.77 Aligned_cols=69 Identities=13% Similarity=0.025 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCCccchhhccCChHHHHHhhCCCcceEEE
Q 025234 124 LLQKYIRLCNDAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTI 200 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~~~~~~~l~GSva~~Vl~~a~~~cPVLV 200 (256)
.+.++.+.+...|+.+ +++-.+ .+++ +.|.+.++|+|=++.+....+.-- -.++..++...|.++||+.
T Consensus 157 ~l~~l~~~a~~lGl~~---lvevh~-~eEl-~~A~~~ga~iIGinnr~l~t~~~d---l~~~~~L~~~ip~~~~vIa 225 (272)
T 3tsm_A 157 LAKELEDTAFALGMDA---LIEVHD-EAEM-ERALKLSSRLLGVNNRNLRSFEVN---LAVSERLAKMAPSDRLLVG 225 (272)
T ss_dssp HHHHHHHHHHHTTCEE---EEEECS-HHHH-HHHTTSCCSEEEEECBCTTTCCBC---THHHHHHHHHSCTTSEEEE
T ss_pred HHHHHHHHHHHcCCeE---EEEeCC-HHHH-HHHHhcCCCEEEECCCCCccCCCC---hHHHHHHHHhCCCCCcEEE
Confidence 3455555565567653 344456 4555 445568999886665554333211 2567788888874455444
No 112
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=21.38 E-value=1.6e+02 Score=26.16 Aligned_cols=64 Identities=8% Similarity=0.038 Sum_probs=40.5
Q ss_pred CcEEEEEEEcC--ChHHHHHHHhhhcCCCEEEEcCcCC-CccchhhccCChHHHHHhhCCCcceEEEEeCCc
Q 025234 137 VTVETMLVESK--ATAKAILDLISVANVTSLVMGTKLS-PRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 205 (256)
Q Consensus 137 v~v~~~lv~g~--~v~eaIl~~a~e~~aDLIVmGs~~~-~~~~~~~l~GSva~~Vl~~a~~~cPVLVV~~~~ 205 (256)
-+++...+.+. .+..+.++.+. ++|+||+|-... +..--.++...+.+. ++.++ +|++.|.+..
T Consensus 153 ~~i~~v~l~p~~~~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~--A~kV~v~N~~ 219 (332)
T 2ppv_A 153 KKIDRVFLEPSDVEPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTS--APKLYVSNVM 219 (332)
T ss_dssp SCEEEEEEESCCCCCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCC--SCEEEECCSB
T ss_pred CCceEEEEeCCCCCCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCC--CCEEEEcCCC
Confidence 34555555543 23466777775 689999999874 222222223566666 56788 9999998743
No 113
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=21.04 E-value=89 Score=19.34 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=21.7
Q ss_pred CcEEEEEEEcCChHHHHHHHhhhcCCCEE
Q 025234 137 VTVETMLVESKATAKAILDLISVANVTSL 165 (256)
Q Consensus 137 v~v~~~lv~g~~v~eaIl~~a~e~~aDLI 165 (256)
-++...++...+..++|+++|++.+.|-+
T Consensus 10 kkvslhllvdpdmkdeiikyaqekdfdnv 38 (54)
T 3gxq_A 10 KKVSLHLLVDPDMKDEIIKYAQEKDFDNV 38 (54)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHSTTCH
T ss_pred ceeEEEEeeCCchhHHHHHHHHHccchhH
Confidence 34566666656678999999999888754
No 114
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=20.95 E-value=1e+02 Score=24.63 Aligned_cols=46 Identities=13% Similarity=-0.070 Sum_probs=27.9
Q ss_pred HHHHHHHHhhcCCCcEEEEEEEc-CChHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 124 LLQKYIRLCNDAKVTVETMLVES-KATAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 124 ~L~~~~~~~~~~gv~v~~~lv~g-~~v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
+++.+.+.+...|.+++..-+.. .+ .+.+.+... .+|.||+++--.
T Consensus 35 l~~~~~~~~~~~g~~v~~~dL~~~~d-~~~~~~~l~--~AD~iV~~~P~y 81 (204)
T 2amj_A 35 LTEVADGTLRDLGHDVRIVRADSDYD-VKAEVQNFL--WADVVIWQMPGW 81 (204)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCC-HHHHHHHHH--HCSEEEEEEECB
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcccc-HHHHHHHHH--hCCEEEEECCcc
Confidence 44455555554576666554432 34 455555554 689999999654
No 115
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=20.92 E-value=2.7e+02 Score=22.78 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=25.5
Q ss_pred hhcCCCcEEEEEEEc-CC---hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 132 CNDAKVTVETMLVES-KA---TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g-~~---v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
+...|+++...-... .+ ..+++++..++.++|+||+..-++
T Consensus 56 A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~~ 100 (215)
T 3da8_A 56 AAEASVPVFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFMR 100 (215)
T ss_dssp HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECCS
T ss_pred HHHcCCCEEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCchh
Confidence 344688765431110 00 135788888899999999977553
No 116
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=20.87 E-value=86 Score=25.11 Aligned_cols=34 Identities=0% Similarity=0.076 Sum_probs=25.0
Q ss_pred CCeEEEEecCCH--HHHHHHHHHHhcCCCCEEEEEEE
Q 025234 52 ASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHV 86 (256)
Q Consensus 52 ~~~ILVaVD~S~--~~AL~~Al~lA~~~~a~l~LLHV 86 (256)
+++|+|+|.|+. ..++++.-.+ ++.+.+|.++-.
T Consensus 2 ~k~IllgvTGs~aa~k~~~l~~~L-~~~g~~V~vv~T 37 (181)
T 1g63_A 2 YGKLLICATASINVININHYIVEL-KQHFDEVNILFS 37 (181)
T ss_dssp CCCEEEEECSCGGGGGHHHHHHHH-TTTSSCEEEEEC
T ss_pred CCEEEEEEECHHHHHHHHHHHHHH-HHCCCEEEEEEc
Confidence 578999999999 7777766544 445888776643
No 117
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=20.26 E-value=1.2e+02 Score=24.12 Aligned_cols=47 Identities=9% Similarity=-0.043 Sum_probs=29.6
Q ss_pred HHHHhhhcCCCEEEEcCcCCCccchhh--ccCChHHHHHhhCCCcceEEEEeC
Q 025234 153 ILDLISVANVTSLVMGTKLSPRSRLFT--KKLSKGEFVKKNAPDYCEVTIVHD 203 (256)
Q Consensus 153 Il~~a~e~~aDLIVmGs~~~~~~~~~~--l~GSva~~Vl~~a~~~cPVLVV~~ 203 (256)
..+.+ ..+|++|+.--..+.+.++- +.-+....++.... +||+++|.
T Consensus 70 hi~l~--~~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~--~pvvl~Pa 118 (175)
T 3qjg_A 70 HVDIA--NKHDKIIILPATSNTINKIANGICDNLLLTICHTAF--EKLSIFPN 118 (175)
T ss_dssp HHHHH--HTCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCG--GGEEEEEC
T ss_pred ccccc--chhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcC--CCEEEEec
Confidence 44444 36799999876654444332 11244455677778 99999983
No 118
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=20.25 E-value=1.3e+02 Score=22.83 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=21.8
Q ss_pred cCCCcEEEEEEEcCChHHHHHHHhhhcCCCEEEEcCcCCC
Q 025234 134 DAKVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSP 173 (256)
Q Consensus 134 ~~gv~v~~~lv~g~~v~eaIl~~a~e~~aDLIVmGs~~~~ 173 (256)
..|++++..-+...+ ...+...+ .++|.||+|+--..
T Consensus 27 ~~g~~v~~~~~~~~~-~~~~~~~~--~~~d~ii~Gspty~ 63 (161)
T 3hly_A 27 KTGVAVEMVDLRAVD-PQELIEAV--SSARGIVLGTPPSQ 63 (161)
T ss_dssp HTTCCEEEEETTTCC-HHHHHHHH--HHCSEEEEECCBSS
T ss_pred hCCCeEEEEECCCCC-HHHHHHHH--HhCCEEEEEcCCcC
Confidence 357766543333333 34454433 36799999998764
No 119
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=20.16 E-value=3.5e+02 Score=21.94 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=26.5
Q ss_pred hhcCCCcEEEEEEEc-CC---hHHHHHHHhhhcCCCEEEEcCcCC
Q 025234 132 CNDAKVTVETMLVES-KA---TAKAILDLISVANVTSLVMGTKLS 172 (256)
Q Consensus 132 ~~~~gv~v~~~lv~g-~~---v~eaIl~~a~e~~aDLIVmGs~~~ 172 (256)
+...|+++...-... .+ ..+++++..++.++|+||+..-++
T Consensus 53 A~~~gIp~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~~ 97 (209)
T 4ds3_A 53 AEAAGIATQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYMR 97 (209)
T ss_dssp HHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCCS
T ss_pred HHHcCCCEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 445688765421111 11 136889999999999999987553
Done!