Query 025235
Match_columns 256
No_of_seqs 214 out of 649
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 06:20:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025235.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025235hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ayd_A WRKY transcription fact 100.0 3.6E-35 1.2E-39 223.7 7.0 75 76-153 1-75 (76)
2 1wj2_A Probable WRKY transcrip 100.0 1.8E-34 6.3E-39 220.8 5.3 74 77-153 5-78 (78)
3 2rpr_A Flywch-type zinc finger 83.6 0.7 2.4E-05 34.2 2.8 53 88-153 21-75 (87)
4 1cz6_A Protein (androctonin); 30.9 14 0.00046 22.6 0.5 8 113-120 16-23 (26)
5 1tue_B Regulatory protein E2; 22.9 54 0.0018 29.0 3.1 24 1-24 7-30 (218)
6 1xiw_B T-cell surface glycopro 17.0 37 0.0013 24.8 0.6 28 92-119 17-54 (79)
7 3kgb_A Thymidylate synthase 1/ 13.5 25 0.00086 32.2 -1.3 11 93-103 114-124 (294)
8 3ed7_A Tsase, TS, thymidylate 13.0 25 0.00087 32.3 -1.5 11 93-103 117-127 (295)
9 4e17_B Catenin alpha-1; four h 11.4 2.2E+02 0.0074 19.1 3.1 18 4-21 16-33 (40)
10 2nnu_A Regulatory protein E2; 11.3 1.9E+02 0.0066 25.2 3.7 23 2-24 5-27 (205)
No 1
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=3.6e-35 Score=223.66 Aligned_cols=75 Identities=52% Similarity=1.022 Sum_probs=69.6
Q ss_pred eeEEEeecCCCCcccccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025235 76 SRFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 153 (256)
Q Consensus 76 ~rv~vrt~~~dts~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~ 153 (256)
+||.|++.+ + ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+||.+|+|||+|+|||+.|.
T Consensus 1 ~r~~v~t~~-~-~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 75 (76)
T 2ayd_A 1 SRIVVHTQT-L-FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP 75 (76)
T ss_dssp CEEEEEEEC-S-SSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred CeEEEEecC-C-CCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence 478898874 3 46789999999999999999999999999998 699999999999999999999999999999886
No 2
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=100.00 E-value=1.8e-34 Score=220.76 Aligned_cols=74 Identities=50% Similarity=1.002 Sum_probs=65.9
Q ss_pred eEEEeecCCCCcccccCCccccccCccccCCCCCCCcccccCCCCCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025235 77 RFYVRASDSNSTLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 153 (256)
Q Consensus 77 rv~vrt~~~dts~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~ 153 (256)
+|.+++.+. ..+++|||+|||||||.|+|+++||+||||++ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus 5 ~~~~~t~s~--~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~ 78 (78)
T 1wj2_A 5 SSGVQTTSE--VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA 78 (78)
T ss_dssp ---CCCCCC--CCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred eEEEeccCC--CCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence 566777643 45799999999999999999999999999998 799999999999999999999999999999874
No 3
>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=83.62 E-value=0.7 Score=34.21 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=34.7
Q ss_pred cccccCCccccccCccccCCCCCCCcccccCCC--CCCccccceeecCCCCCEEEEEeeccCCCCCCC
Q 025235 88 TLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFA--PSCPVKKKVQRSAEDPSILVATYEGEHNHPQPT 153 (256)
Q Consensus 88 s~~~~DGy~WRKYGQK~ikgn~~pRsYYRCs~~--~~C~akKqVQrs~~D~~i~~vtY~GeHnH~~p~ 153 (256)
..++-|||.-.+--+ ...+.|.+|+.. .+|.|+=.... ++ +...+.|||++..
T Consensus 21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~--~~-----~~~~~~HnH~p~~ 75 (87)
T 2rpr_A 21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG--HR-----IMVMRSHCHQPDL 75 (87)
T ss_dssp EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET--TE-----EEECSCCSSCCCH
T ss_pred cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC--CC-----EECCCCcCCCCch
Confidence 567889998775321 123689999963 48999855442 22 2356889997543
No 4
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=30.92 E-value=14 Score=22.55 Aligned_cols=8 Identities=38% Similarity=1.078 Sum_probs=6.7
Q ss_pred cccccCCC
Q 025235 113 AYFKCSFA 120 (256)
Q Consensus 113 sYYRCs~~ 120 (256)
+||+|+..
T Consensus 16 cyykctnr 23 (26)
T 1cz6_A 16 CYYKCTNR 23 (26)
T ss_dssp CEEEECCC
T ss_pred eEEEccCC
Confidence 69999975
No 5
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=22.88 E-value=54 Score=29.01 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=20.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhCC
Q 025235 1 MLSILCKNYNNLRQQYMDLMNKNT 24 (256)
Q Consensus 1 mL~~~~~~y~~L~~~l~~~~~~~~ 24 (256)
|.+.|++..++||.+|+++..+.+
T Consensus 7 ~ME~L~~RldalQe~ll~lyE~dS 30 (218)
T 1tue_B 7 PKETLSERLSALQDKIIDHYENDS 30 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 567899999999999999987643
No 6
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=17.01 E-value=37 Score=24.83 Aligned_cols=28 Identities=14% Similarity=0.313 Sum_probs=18.7
Q ss_pred cCCccccccCccc--------cC--CCCCCCcccccCC
Q 025235 92 KDGYQWRKYGQKV--------TR--DNPSPRAYFKCSF 119 (256)
Q Consensus 92 ~DGy~WRKYGQK~--------ik--gn~~pRsYYRCs~ 119 (256)
.+++.|.|-|... +. ...-||.||.|..
T Consensus 17 ~~~i~W~k~~~~i~~~~~~tL~L~~~~~d~sG~Y~C~~ 54 (79)
T 1xiw_B 17 NTSITWVEGTVGTLLSDITRLDLGKRILDPRGIYRCNG 54 (79)
T ss_dssp SSCEEEEEECCCEEEGGGTEEEEEEGGGCCEEEEEEC-
T ss_pred CCCEEEEECCcccccccCCeEEeccCcCCCCeEEEecC
Confidence 5778899888642 22 2345999999953
No 7
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=13.49 E-value=25 Score=32.24 Aligned_cols=11 Identities=45% Similarity=1.371 Sum_probs=8.8
Q ss_pred CCccccccCcc
Q 025235 93 DGYQWRKYGQK 103 (256)
Q Consensus 93 DGy~WRKYGQK 103 (256)
=|+|||.||-+
T Consensus 114 YG~QwR~~~~~ 124 (294)
T 3kgb_A 114 YGFQWRHFGAR 124 (294)
T ss_dssp HHHHHHSBTCC
T ss_pred cchhhhcCCCc
Confidence 36899999864
No 8
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=12.97 E-value=25 Score=32.27 Aligned_cols=11 Identities=45% Similarity=1.325 Sum_probs=8.8
Q ss_pred CCccccccCcc
Q 025235 93 DGYQWRKYGQK 103 (256)
Q Consensus 93 DGy~WRKYGQK 103 (256)
=|+|||.+|.+
T Consensus 117 YG~QwR~~~~~ 127 (295)
T 3ed7_A 117 YGFQWRHFGAE 127 (295)
T ss_dssp THHHHHHBTCC
T ss_pred hhhhhhccCCc
Confidence 36899999865
No 9
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=11.41 E-value=2.2e+02 Score=19.07 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025235 4 ILCKNYNNLRQQYMDLMN 21 (256)
Q Consensus 4 ~~~~~y~~L~~~l~~~~~ 21 (256)
.++..+|+||.-|++|++
T Consensus 16 rIv~eCnavrqALQdLls 33 (40)
T 4e17_B 16 RIVAECNAVRQALQDLLS 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777666653
No 10
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=11.28 E-value=1.9e+02 Score=25.20 Aligned_cols=23 Identities=13% Similarity=0.423 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCC
Q 025235 2 LSILCKNYNNLRQQYMDLMNKNT 24 (256)
Q Consensus 2 L~~~~~~y~~L~~~l~~~~~~~~ 24 (256)
.+.|++..++||.+|+++..+.+
T Consensus 5 ME~L~~RldalQe~ll~lyE~ds 27 (205)
T 2nnu_A 5 METLCQRLNVCQDKILTHYENDS 27 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 46799999999999999987643
Done!