BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025236
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FJ2|A Chain A, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
pdb|1FJ2|B Chain B, Crystal Structure Of The Human Acyl Protein Thioesterase 1
At 1.5 A Resolution
Length = 232
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 23/231 (9%)
Query: 25 VVRPKGKHQATIVWLHGLSDKGSSWSQLLETLPLPNIKWICPTAPTRPVAIFGGYPCTAW 84
+V K A +++LHGL D G W++ + +IK+ICP AP RPV + +W
Sbjct: 15 IVPAARKATAAVIFLHGLGDTGHGWAEAFAGIRSSHIKYICPHAPVRPVTLNMNVAMPSW 74
Query: 85 FDVGDLSEDGPDDLEGLDASAAHVANLLSTE-----PADIKLGIGGFSMGAAIALYSATC 139
FD+ LS D +D G+ +A ++ L+ E P++ ++ +GGFS G A++LY+A
Sbjct: 75 FDIIGLSPDSQEDESGIKQAAENIKALIDQEVKNGIPSN-RIILGGFSQGGALSLYTALT 133
Query: 140 RILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHGSGDD 199
L+ + LS WLP + +G R S IL CHG D
Sbjct: 134 T-----------QQKLAGVTALSCWLPLRASFP---QGPIGGANRDIS--ILQCHGDCDP 177
Query: 200 VVAYKHGERSAQTLNS-VGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 249
+V G + + L + V ++TF+ Y G+ H + +EM +V+ ++ L
Sbjct: 178 LVPLMFGSLTVEKLKTLVNPANVTFKTYEGMMHSSCQQEMMDVKQFIDKLL 228
>pdb|1AUO|A Chain A, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUO|B Chain B, Carboxylesterase From Pseudomonas Fluorescens
pdb|1AUR|A Chain A, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
pdb|1AUR|B Chain B, Pmsf-Inhibited Carboxylesterase From Pseudomonas
Fluorescens
Length = 218
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 109/231 (47%), Gaps = 25/231 (10%)
Query: 25 VVRPKGKHQATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPVAIFGGYPCT 82
+++P A ++WLHGL + + E L L +++ P APTRPV I GGY
Sbjct: 6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMP 65
Query: 83 AWFDVGDLSEDGPDDLEGLDASAAHVANLLSTEPAD----IKLGIGGFSMGAAIALYSAT 138
+W+D+ +S LE L+ SA V +L+ + ++ + GFS G A+ ++A
Sbjct: 66 SWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAF 125
Query: 139 CRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHGSGD 198
G G ++ LS + P T +E S R +P L HG D
Sbjct: 126 INWQGPLGG----------VIALSTYAP---TFGDELELSASQQR----IPALCLHGQYD 168
Query: 199 DVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 249
DVV G + + L S G +T++ Y +GH +P+E+ ++ WL ARL
Sbjct: 169 DVVQNAMGRSAFEHLKSRGV-TVTWQEYP-MGHEVLPQEIHDIGAWLAARL 217
>pdb|4F21|A Chain A, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|B Chain B, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|C Chain C, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|D Chain D, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|E Chain E, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|F Chain F, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|G Chain G, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
pdb|4F21|H Chain H, Crystal Structure Of CarboxylesterasePHOSPHOLIPASE FAMILY
PROTEIN From Francisella Tularensis
Length = 246
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 27/236 (11%)
Query: 25 VVRPKGKHQATIVWLHGLSDKGSSWSQLLE--TLPLPNIKWICPTAPTRPVAIFGGYPCT 82
++ P + + ++WLHGL G + ++ + L I++I P A PV I G
Sbjct: 29 LMEPAKQARFCVIWLHGLGADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMR 88
Query: 83 AWFDVGDLSEDGPD---DLEGLDASAAHVANLLSTEP----ADIKLGIGGFSMGAAIALY 135
AW+D+ L + + D+EG+++S A V L+ ++ A + + GFS G IA Y
Sbjct: 89 AWYDIKSLDANSLNRVVDVEGINSSIAKVNKLIDSQVNQGIASENIILAGFSQGGIIATY 148
Query: 136 SATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHG 195
+A L I+ LS +LP K ++ T LPIL+CHG
Sbjct: 149 TAITS-----------QRKLGGIMALSTYLPAWDNFKGKI------TSINKGLPILVCHG 191
Query: 196 SGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARLEL 251
+ D V+ G + L GF + ++ Y G+ H EE+ ++ N++ ++
Sbjct: 192 TDDQVLPEVLGHDLSDKLKVSGFAN-EYKHYVGMQHSVCMEEIKDISNFIAKTFKI 246
>pdb|3U0V|A Chain A, Crystal Structure Analysis Of Human Lyplal1
Length = 239
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 28/235 (11%)
Query: 25 VVRPKGKHQATIVWLHGLSDKGSS---WSQ--LLETLPLPNIKWICPTAPTRPVAIFGGY 79
+V P G+H A++++LHG D G W + L + L +IK I PTAP R G
Sbjct: 15 IVSPAGRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTFQHIKIIYPTAPPRSYTPMKGG 74
Query: 80 PCTAWFDVGDLSEDGPDDLEGLDASAAHVANLLSTE-PADIK---LGIGGFSMGAAIALY 135
WFD ++ D P+ LE +D + +L+ E + IK + IGGFSMG +A++
Sbjct: 75 ISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVKSGIKKNRILIGGFSMGGCMAMH 134
Query: 136 SATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILL-CH 194
A Y N +++ + LS +L + + ++ S LP L CH
Sbjct: 135 LA-------YRNHQ----DVAGVFALSSFLNKASAVYQALQKSN------GVLPELFQCH 177
Query: 195 GSGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 249
G+ D++V + E + L S+G F + V H E+D ++ W+ +L
Sbjct: 178 GTADELVLHSWAEETNSMLKSLGVTT-KFHSFPNVYHELSKTELDILKLWILTKL 231
>pdb|3CN7|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|C Chain C, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN7|D Chain D, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Monoclinic Crystal
Form
pdb|3CN9|A Chain A, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
pdb|3CN9|B Chain B, Crystal Structure Analysis Of The Carboxylesterase Pa3859
From Pseudomonas Aeruginosa Pao1- Orthorhombic Crystal
Form
Length = 226
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 104/222 (46%), Gaps = 26/222 (11%)
Query: 34 ATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPVAIFGGYPCTAWFDVGDLS 91
A I+WLHGL + + + E L LP+ ++I P AP++ V + GG+ +W+D+ S
Sbjct: 25 ACIIWLHGLGADRTDFKPVAEALQMVLPSTRFILPQAPSQAVTVNGGWVMPSWYDILAFS 84
Query: 92 EDGPDDLEGLDASAAHVANLLSTEPAD----IKLGIGGFSMGAAIALYSATCRILGQYGN 147
D + L+ASA V L+ + A ++ + GFS G A+ L++A R
Sbjct: 85 PARAIDEDQLNASADQVIALIDEQRAKGIAAERIILAGFSQGGAVVLHTAFRR------- 137
Query: 148 GNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRAASLPILLCHGSGDDVVAYKHGE 207
Y+ L ++ LS + P L R +P+L HGS DDVV G
Sbjct: 138 ---YAQPLGGVLALSTYAPTFDDLA--------LDERHKRIPVLHLHGSQDDVVDPALGR 186
Query: 208 RSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWLTARL 249
+ L + G ++ + Y +GH EE+ ++ WL RL
Sbjct: 187 AAHDALQAQGV-EVGWHDYP-MGHEVSLEEIHDIGAWLRKRL 226
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 89/244 (36%), Gaps = 38/244 (15%)
Query: 16 RPFEFGRTHVVRPKGKHQATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPV 73
R FGR G+ + +V+LHG G+ L E L LP ++ P AP
Sbjct: 51 RKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPEPCR 108
Query: 74 AIFGGYPCTAWFDVGDLSEDGPDDLEGL--------DASAAHVANLLSTEPADIKLGIGG 125
A G+ WF + L DG + D A H L L + G
Sbjct: 109 ACGFGF---QWFPIPWL--DGSSETAAAEGMAAAARDLDAFHDERLAEEGLPPEALALVG 163
Query: 126 FSMGAAIALYSATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGSREATRRA 185
FS G +AL+ A R + ++ IVG SG L + R A
Sbjct: 164 FSQGTMMALHVAPRR-----------AEEIAGIVGFSGRL---------LAPERLAEEAR 203
Query: 186 ASLPILLCHGSGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEMDEVRNWL 245
+ P+LL HG D VV + + + L GF G GH P+ + +L
Sbjct: 204 SKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG-HVMKGTGHGIAPDGLSVALAFL 262
Query: 246 TARL 249
RL
Sbjct: 263 KERL 266
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 95/251 (37%), Gaps = 52/251 (20%)
Query: 16 RPFEFGRTHVVRPKGKHQATIVWLHGLSDKGSSWSQLLETLP--LPNIKWICPTAPTRPV 73
R FGR G+ + +V+LHG G+ L E L LP ++ P AP
Sbjct: 51 RKLTFGRRGAA--PGEATSLVVFLHGYGADGADLLGLAEPLAPHLPGTAFVAPDAPE--- 105
Query: 74 AIFGGYPCTA------WFDVGDLSEDGPDDLEGLDASAAHVANL-------LSTE--PAD 118
PC A WF + L DG + + AA +L L+ E P +
Sbjct: 106 ------PCRANGFGFQWFPIPWL--DGSSETAAAEGMAAAARDLDAFLDERLAEEGLPPE 157
Query: 119 IKLGIGGFSMGAAIALYSATCRILGQYGNGNPYSVNLSAIVGLSGWLPCSRTLKSRMEGS 178
L + GFS G +AL+ A R + ++ IVG SG L +
Sbjct: 158 -ALALVGFSQGTMMALHVAPRR-----------AEEIAGIVGFSGRL---------LAPE 196
Query: 179 REATRRAASLPILLCHGSGDDVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVPEEM 238
R A + P+LL HG D VV + + + L GF G GH P+ +
Sbjct: 197 RLAEEARSKPPVLLVHGDADPVVPFADMSLAGEALAEAGFTTYG-HVMKGTGHGIAPDGL 255
Query: 239 DEVRNWLTARL 249
+L RL
Sbjct: 256 SVALAFLKERL 266
>pdb|3K2I|A Chain A, Human Acyl-Coenzyme A Thioesterase 4
pdb|3K2I|B Chain B, Human Acyl-Coenzyme A Thioesterase 4
Length = 422
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 66/171 (38%), Gaps = 27/171 (15%)
Query: 92 EDGPDDLEGLDASAAHVANLLSTEPADIK---LGIGGFSMGAAIAL--------YSATCR 140
ED P++++ + A + +K +G+ G S+GA I L SAT
Sbjct: 195 EDLPNNMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKNVSATVS 254
Query: 141 ILGQYGNGN-----------PYSVNLSAI-VGLSGWLPCSRTLKSRMEGSREATR---RA 185
I G +GN P +L I V SG + + + G + +
Sbjct: 255 INGSGISGNTAINYKHSSIPPLGYDLRRIKVAFSGLVDIVDIRNALVGGYKNPSMIPIEK 314
Query: 186 ASLPILLCHGSGD-DVVAYKHGERSAQTLNSVGFRDLTFRCYNGVGHYTVP 235
A PILL G D + + + + ++ L + G CY G GHY P
Sbjct: 315 AQGPILLIVGQDDHNWRSELYAQTVSERLQAHGKEKPQIICYPGTGHYIEP 365
>pdb|2AJT|A Chain A, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|B Chain B, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2AJT|C Chain C, Crystal Structure Of L-Arabinose Isomerase From E.Coli
pdb|2HXG|A Chain A, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|B Chain B, Crystal Structure Of Mn2+ Bound Ecai
pdb|2HXG|C Chain C, Crystal Structure Of Mn2+ Bound Ecai
Length = 500
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 73 VAIFGGYPCTAWFDVGDLSEDGPDDLEGLDASAAHVANLLSTE 115
+ IF Y WF +G GP+ L + A HV N L+TE
Sbjct: 1 MTIFDNYEV--WFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|4F2D|A Chain A, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|B Chain B, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
pdb|4F2D|C Chain C, Crystal Structure Of Escherichia Coli L-Arabinose
Isomerase (Ecai) Complexed With Ribitol
Length = 500
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 75 IFGGYPCTAWFDVGDLSEDGPDDLEGLDASAAHVANLLSTE 115
IF Y WF +G GP+ L + A HV N L+TE
Sbjct: 3 IFDNYEV--WFVIGSQHLYGPETLRQVTQHAEHVVNALNTE 41
>pdb|1EYS|L Chain L, Crystal Structure Of Photosynthetic Reaction Center From A
Thermophilic Bacterium, Thermochromatium Tepidum
Length = 280
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 90 LSEDGPDDLEGLDASAAHVANLLSTEPADIKLGIG-------GFSMGAAIALYSATCRIL 142
L+E G + + A+ A ++ L KLGIG F++GA + L ++
Sbjct: 88 LTEGGLWQIITICAAGAFISWALREVEICRKLGIGFHVPFAFSFAIGAYLVLVFVRPLLM 147
Query: 143 GQYGNGNPYSV 153
G +G+G PY +
Sbjct: 148 GAWGHGFPYGI 158
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 187 SLPILLCHGSGDDVVAYKHGE-RSAQTLNSVGFRDLTFRCYNGVGH 231
+P+L+ HG+ D VV Y +SA+ L + T + Y G+ H
Sbjct: 215 DVPVLVAHGTDDQVVPYADAAPKSAELLANA-----TLKSYEGLPH 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,102,050
Number of Sequences: 62578
Number of extensions: 350036
Number of successful extensions: 950
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 14
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)