BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025237
(256 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Query: 62 ISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICA 121
I F+ RN P A GF+ Y +FI A + FGTTG+ + +EI A
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFP--SFGTTGSTDVRKREIAA 59
Query: 122 FLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAI 181
FL +T+ G+ A GP AWG C+ E +PS +YC S +Y PC PG YYGRG I
Sbjct: 60 FLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRY--PCAPGKSYYGRGPI 117
Query: 182 PIYWNYNYGATGEALKADLVCGQGDIDAMNNIVS 215
+ WNYNYG GEAL+ +L+ G D+ A + ++S
Sbjct: 118 QLSWNYNYGPCGEALRVNLL-GNPDLVATDRVIS 150
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 245
YG + L CG+G + + + + Y +LGVG L C Q+ F
Sbjct: 191 YGVITNIINGGLECGKGPNPQVADRIGFFRRYCGILGVGT-----GNNLDCYNQRPF 242
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 74/145 (51%), Gaps = 7/145 (4%)
Query: 71 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 130
F+ RN GF+ Y +FITA + FGTTG + +E+ AFLA +T
Sbjct: 12 FDQLLKHRNDQACEGKGFYSYNAFITAARSFA--AFGTTGDSNTRKREVAAFLAQTSHET 69
Query: 131 SCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYG 190
+ G + GP AWG C+ E S YCD S PC+ G YYGRG I + NYNY
Sbjct: 70 TGGAATSPDGPYAWGYCFVTERDKSNRYCDGS----GPCSAGKSYYGRGPIQLTHNYNYN 125
Query: 191 ATGEALKADLVCGQGDIDAMNNIVS 215
A G AL DL+ D+ A + +VS
Sbjct: 126 AAGRALGVDLI-NNPDLVARDAVVS 149
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 245
+G + L CG+G A + + Y Y D+ GV GPN L+C +Q+ F
Sbjct: 190 FGVITNIINGGLECGKGPTPASGDRIGFYKRYCDVFGV---SYGPN--LNCRDQRPF 241
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 4/141 (2%)
Query: 61 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 120
++S QF+ RN A GF+ Y +F+ A + GFG TG+ + +++
Sbjct: 2 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFP--GFGATGSTDARKRDVA 59
Query: 121 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 180
AFLA +T+ G+ A G AWG C+ E + YC S + +PC PG YYGRG
Sbjct: 60 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQ--WPCAPGKRYYGRGP 117
Query: 181 IPIYWNYNYGATGEALKADLV 201
I + NYNYG G A+ DL+
Sbjct: 118 IQLSHNYNYGPAGRAIGVDLL 138
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 245
+G + L CG G + + + Y Y D+LGVG + L C Q+ F
Sbjct: 192 FGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGY-----GDNLDCYNQRPF 243
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 71 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 130
F+ RN P GF+ Y +F+TA + GFGTTG + +E+ AFLA +T
Sbjct: 11 FDQLLKHRNDPACEGKGFYSYNAFVTAARSFG--GFGTTGDTNTRKREVAAFLAQTSHET 68
Query: 131 SCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYG 190
+ G + GP AWG C+ E S YCD PC G YYGRG I + NYNY
Sbjct: 69 TGGAAGSPDGPYAWGYCFVTERDKSNKYCDPG----TPCPAGKSYYGRGPIQLTHNYNYA 124
Query: 191 ATGEALKADLVCGQGDIDAMNNIVS 215
G AL DL+ D+ A + ++S
Sbjct: 125 QAGRALGVDLI-NNPDLVARDAVIS 148
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 245
+G + + CG+G A + + Y Y D+L + GPN L+C +Q+ F
Sbjct: 189 FGVITNIINGGIECGRGPSPASGDRIGFYKRYCDVLHL---SYGPN--LNCRDQRPF 240
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 61 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 120
++S QF+ RN A GF+ Y +F+ A + GFGTTG+ + +E+
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFS--GFGTTGSADVQKREVA 58
Query: 121 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 180
AFLA +T+ G+ A G AWG C+ E S YC S + +PC PG YYGRG
Sbjct: 59 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116
Query: 181 IPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVS 215
I + NYNYG G A+ DL+ D+ A + VS
Sbjct: 117 IQLSHNYNYGPAGRAIGVDLLANP-DLVATDATVS 150
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 245
+G + + CG G + + + Y Y D+LGVG L C Q+ F
Sbjct: 191 FGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGY-----GNNLDCYSQRPF 242
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 70 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 129
QF N HAVGF+ Y +FITA + FG TG + KEI AF +
Sbjct: 13 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 70
Query: 130 TSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 189
T+ G+ A G WG CY E+ S +CD S +PC PG YYGRG + + WNYNY
Sbjct: 71 TTGGWSGAPDGANTWGYCYKEEIDKSDPHCD-SNNLEWPCAPGKFYYGRGPMMLSWNYNY 129
Query: 190 GATGEALKADLV 201
G G L +L+
Sbjct: 130 GPCGRDLGLELL 141
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 171 PGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQ 230
P A G +P YG + L C D+ + + +S Y Y + GV
Sbjct: 182 PSAADISAGRLP-----GYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGV---- 232
Query: 231 AGPNEELSCAEQKAFN 246
P + C Q+ FN
Sbjct: 233 -DPGSNIDCDNQRPFN 247
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 70 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 129
QF N HAVGF+ Y +FITA + FG TG + KEI AF +
Sbjct: 10 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 67
Query: 130 TSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 189
T+ G+ A G WG CY E+ S +CD S +PC PG YYGRG + + WNYNY
Sbjct: 68 TTGGWSGAPDGANTWGYCYKEEIDKSDPHCD-SNNLEWPCAPGKFYYGRGPMMLSWNYNY 126
Query: 190 GATGEALKADLV 201
G G L +L+
Sbjct: 127 GPCGRDLGLELL 138
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 171 PGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQ 230
P A G +P YG + L C D+ + + +S Y Y + GV
Sbjct: 179 PSAADISAGRLP-----GYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGV---- 229
Query: 231 AGPNEELSCAEQKAFN 246
P + C Q+ FN
Sbjct: 230 -DPGSNIDCDNQRPFN 244
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 74/141 (52%), Gaps = 4/141 (2%)
Query: 61 TISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC 120
++S QF+ RN A GF+ Y +F+ A + GFGTTG+ + +E+
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFP--GFGTTGSADAQKREVA 58
Query: 121 AFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGA 180
AFLA +T+ G+ A G AWG C+ E S YC S + +PC PG YYGRG
Sbjct: 59 AFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQ--WPCAPGKRYYGRGP 116
Query: 181 IPIYWNYNYGATGEALKADLV 201
I + NYNYG G A+ DL+
Sbjct: 117 IQLSHNYNYGPAGRAIGVDLL 137
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAF 245
+G + + CG G + + + Y Y D+LGVG L C Q+ F
Sbjct: 191 FGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGY-----GNNLDCYSQRPF 242
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 70 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 129
QF N HAVGF+ Y +FITA + FG TG + KEI AF +
Sbjct: 12 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFP--SFGNTGDLAMRKKEIAAFFGQTSHE 69
Query: 130 TSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNY 189
T+ G+ A G WG CY + S +CD S +PC PG YYGRG + + WNYNY
Sbjct: 70 TTGGWSGAPDGANTWGYCYKEAIDKSDPHCD-SNNLEWPCAPGKFYYGRGPMMLSWNYNY 128
Query: 190 GATGEALKADLV 201
G G L +L+
Sbjct: 129 GPCGRDLGLELL 140
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 171 PGAEYYGRGAIPIYWNYNYGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQ 230
P A G +P YG + L C D+ + + +S Y Y + GV
Sbjct: 181 PSAADISAGRLP-----GYGVITNIINGGLECAGRDVAKVQDRISFYTRYCGMFGV---- 231
Query: 231 AGPNEELSCAEQKAFN 246
P + C Q+ FN
Sbjct: 232 -DPGSNIDCDNQRPFN 246
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 71 FENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKT 130
FE RN A GF+ Y++F+ A + G TG + +E+ AFL +T
Sbjct: 67 FERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFG--GTGNTETRKREVAAFLGQTSHET 124
Query: 131 SCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYG 190
+ G+ A GP +WG C+ E +P YC S + +PC PG +YYGRG I + +N+NYG
Sbjct: 125 TGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPE--WPCAPGRKYYGRGPIQLSFNFNYG 182
Query: 191 ATGEALKADLVCGQGDIDAMNNIVS 215
G A+ DL+ D+ A + VS
Sbjct: 183 PAGRAIGVDLLSNP-DLVATDATVS 206
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 5/58 (8%)
Query: 189 YGATGEALKADLVCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSCAEQKAFN 246
YG + L CG G D + N + Y Y G+G L C Q+ FN
Sbjct: 247 YGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGT-----GGNLDCYNQRPFN 299
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 64/113 (56%), Gaps = 17/113 (15%)
Query: 87 GFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGL 146
GF+ Y +FI A Y GFGTTG+ K +E+ AF A+V +T GL
Sbjct: 26 GFYTYNAFIAAANAYS--GFGTTGSNDVKKRELAAFFANVMHETG-------------GL 70
Query: 147 CYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKAD 199
CY +E +P +YC S T+PCT G Y+GRG + + WNYNYGA G+++ D
Sbjct: 71 CYINEKNPPINYCQSSS--TWPCTSGKSYHGRGPLQLSWNYNYGAAGKSIGFD 121
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 62/134 (46%), Gaps = 25/134 (18%)
Query: 70 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 129
QF+ F RN+ F+ Y A Y GF TG+ K +E AFLA+VG +
Sbjct: 7 QFDQMFPSRNS-------FYTYSGLTAALSAYP--GFSNTGSDTVKKQEAAAFLANVGHE 57
Query: 130 TSCGYGVATGGPLAWGLCYNHEMSPSQ--SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNY 187
T GL Y E + + YCD S Y P +YYGRG + + WN+
Sbjct: 58 TG-------------GLVYVVEQNTANYPHYCDASQPYGCPAG-NDKYYGRGPVQLSWNF 103
Query: 188 NYGATGEALKADLV 201
NY A G+AL DL+
Sbjct: 104 NYKAAGDALGIDLL 117
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 70 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 129
QF F RN F+ Y+ A Y F TG+ K +E AFLA+V +
Sbjct: 68 QFNQMFPNRN-------AFYTYKGLTDALSAYP--AFAKTGSDEVKKREAAAFLANVSHQ 118
Query: 130 TSCGYGVATGGPLAWGLCYNHEMSPSQ--SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNY 187
T GL Y E++ + YCD + Y P A YYGRG I + WN+
Sbjct: 119 TG-------------GLFYIKEVNEANYPHYCDTTQSYGCPAGQAA-YYGRGPIQLSWNF 164
Query: 188 NYGATGEALKADLVC 202
NY A G+AL +L+
Sbjct: 165 NYKAAGDALGINLLA 179
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 70 QFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCK 129
QF F RN F+ Y+ A Y F TG+ K +E AFLA+V +
Sbjct: 68 QFNQMFPNRN-------AFYTYKGLTDALSAYP--AFAKTGSDEVKKREAAAFLANVSHE 118
Query: 130 TSCGYGVATGGPLAWGLCYNHEMSPSQ--SYCDDSYKYTYPCTPGAEYYGRGAIPIYWNY 187
T GL Y E++ + YCD + Y P A YYGRG I + WN+
Sbjct: 119 TG-------------GLFYIKEVNEANYPHYCDTTQSYGCPAGQAA-YYGRGPIQLSWNF 164
Query: 188 NYGATGEALKADLVC 202
NY A G+AL +L+
Sbjct: 165 NYKAAGDALGINLLA 179
>pdb|3C2W|A Chain A, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|B Chain B, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|C Chain C, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|D Chain D, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|E Chain E, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|F Chain F, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|G Chain G, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3C2W|H Chain H, Crystal Structure Of The Photosensory Core Domain Of P.
Aeruginosa Bacteriophytochrome Pabphp In The Pfr State
pdb|3NHQ|A Chain A, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|B Chain B, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|C Chain C, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|D Chain D, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|E Chain E, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|F Chain F, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|G Chain G, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NHQ|H Chain H, The Dark Pfr Structure Of The Photosensory Core Module Of
P. Aeruginosa Bacteriophytochrome
pdb|3NOP|C Chain C, Light-Induced Intermediate Structure L1 Of Pseudomonas
Aeruginosa Bacteriophytochrome
pdb|3NOT|C Chain C, Light-Induced Intermediate Structure L2 Of P. Aeruginosa
Bacteriophytochrome
pdb|3NOU|C Chain C, Light-Induced Intermediate Structure L3 Of P. Aeruginosa
Bacteriophytochrome
Length = 505
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 120 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRG 179
C +L ++G + S + GG L WGL H MSP YP + + +
Sbjct: 248 CEYLTNMGVRASMSISIVVGGKL-WGLFSCHHMSPK--------LIPYPVRMSFQIFSQV 298
Query: 180 AIPIYWNYNYGATGEALKA 198
I G E L+
Sbjct: 299 CSAIVERLEQGRIAELLRV 317
>pdb|3G6O|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
pdb|3G6O|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Pabphp Photosensory Core Domain Mutant Q188l
Length = 505
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 120 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRG 179
C +L ++G + S + GG L WGL H MSP YP + + +
Sbjct: 248 CEYLTNMGVRASMSISIVVGGKL-WGLFSCHHMSPK--------LIPYPVRMSFQIFSQV 298
Query: 180 AIPIYWNYNYGATGEALKA 198
I G E L+
Sbjct: 299 CSAIVERLEQGRIAELLRV 317
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 82 VAHAVGFWDYQSFITATVK--------YQPLGFGTTGTKLDK---MKEICAFLAHVGCKT 130
+ H G + +T +K Y LG G ++K +K++ + VGC
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE 355
Query: 131 SCGYGVATGGPL-AWGLCYNHEM 152
C Y V G L +WG N+++
Sbjct: 356 VCSYAVTIDGKLYSWGSGVNNQL 378
>pdb|3IBR|A Chain A, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
pdb|3IBR|B Chain B, Crystal Structure Of P. Aeruginosa Bacteriophytochrome
Photosensory Core Module Mutant Q188l In The Mixed PrPFR
STATE
Length = 505
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 9/79 (11%)
Query: 120 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRG 179
C +L + G + S + GG L WGL H SP YP + + +
Sbjct: 248 CEYLTNXGVRASXSISIVVGGKL-WGLFSCHHXSPK--------LIPYPVRXSFQIFSQV 298
Query: 180 AIPIYWNYNYGATGEALKA 198
I G E L+
Sbjct: 299 CSAIVERLEQGRIAELLRV 317
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 124 AHVGCKTSCGYG-VATGGPLAWG-LCYNHEMSPSQSYCDDSYKY 165
A +G KT+C + G +A G C N PS++ D SYKY
Sbjct: 23 AQLGLKTACIEKYIGKEGKVALGGTCLNVGCIPSKALLDSSYKY 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,845,234
Number of Sequences: 62578
Number of extensions: 338985
Number of successful extensions: 614
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 33
length of query: 256
length of database: 14,973,337
effective HSP length: 97
effective length of query: 159
effective length of database: 8,903,271
effective search space: 1415620089
effective search space used: 1415620089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)