Query 025237
Match_columns 256
No_of_seqs 202 out of 622
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:53:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4742 Predicted chitinase [G 100.0 9.1E-63 2E-67 450.4 16.4 211 21-239 22-286 (286)
2 PF00182 Glyco_hydro_19: Chiti 100.0 2.4E-57 5.1E-62 406.9 13.1 166 65-239 1-232 (232)
3 cd00325 chitinase_glyco_hydro_ 100.0 1.3E-55 2.8E-60 395.4 14.9 164 66-239 1-230 (230)
4 COG3179 Predicted chitinase [G 99.5 1.4E-14 3E-19 127.1 6.5 125 64-203 2-144 (206)
5 cd00442 lysozyme_like lysozyme 99.0 1.6E-10 3.4E-15 91.2 1.6 60 120-204 1-60 (105)
6 PF00187 Chitin_bind_1: Chitin 95.4 0.0044 9.4E-08 42.3 0.0 23 36-59 5-27 (40)
7 smart00270 ChtBD1 Chitin bindi 93.6 0.048 1E-06 36.8 1.8 22 37-59 4-25 (38)
8 cd00035 ChtBD1 Chitin binding 86.8 0.46 9.9E-06 32.1 1.8 21 37-58 4-24 (40)
9 PF02950 Conotoxin: Conotoxin; 71.6 2.5 5.5E-05 31.0 1.6 13 10-22 1-13 (75)
10 PRK14877 conjugal transfer mat 58.2 10 0.00022 40.8 3.5 57 34-93 881-953 (1062)
11 PF15182 OTOS: Otospiralin 46.8 14 0.0003 28.0 1.7 33 87-131 26-59 (69)
12 PF09447 Cnl2_NKP2: Cnl2/NKP2 38.6 22 0.00048 26.8 1.8 22 59-80 13-34 (67)
13 PHA02867 C-type lectin protein 38.5 47 0.001 29.1 4.0 35 41-77 46-99 (167)
14 PF05473 Herpes_UL45: UL45 pro 35.8 44 0.00095 29.8 3.5 17 39-57 80-96 (200)
15 PRK09738 small toxic polypepti 34.4 55 0.0012 23.6 3.2 26 1-26 1-26 (52)
16 PF04202 Mfp-3: Foot protein 3 27.5 38 0.00083 25.8 1.5 11 3-13 1-11 (71)
17 cd08327 CARD_RAIDD Caspase act 27.3 47 0.001 26.3 2.0 38 65-102 35-80 (94)
18 PF06607 Prokineticin: Prokine 25.1 19 0.00041 28.9 -0.6 16 38-53 26-41 (97)
19 PRK14876 conjugal transfer mat 24.9 57 0.0012 35.5 2.7 41 34-74 775-826 (928)
20 PF07423 DUF1510: Protein of u 24.6 63 0.0014 29.4 2.6 21 8-28 18-38 (217)
21 PF13179 DUF4006: Family of un 20.8 1E+02 0.0022 23.3 2.6 21 5-25 11-31 (66)
22 PHA03097 C-type lectin-like pr 20.1 1.7E+02 0.0036 24.9 4.2 17 60-76 79-95 (157)
No 1
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=9.1e-63 Score=450.40 Aligned_cols=211 Identities=41% Similarity=0.719 Sum_probs=193.0
Q ss_pred HHHhhCCCCcchhhhhhccCCcCCCCCCCCCCCCccccCCCcccccCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhh
Q 025237 21 AVSLANGDESEKVIVKKLKGKKVCIKGWECPTWSKFCCNETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVK 100 (256)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~g~~~c~~~~ccs~~~~yc~~~~v~~iiT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~ 100 (256)
+..++..++.....++...++..|..| +|++++++|++..|+++||++||++||++++...|++++||||++||.|++.
T Consensus 22 ~~~~~~~q~~~~~~~~~~~~~~~c~~g-~c~~~~~~~p~~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~s 100 (286)
T KOG4742|consen 22 SSSTVASQNCGASNTTPPYCKFGCGPG-PCSGPGPPNPASKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARS 100 (286)
T ss_pred HHHhhhcccCCCCccccccccCCCCCC-CCCCCCCCCCcccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHh
Confidence 344555444323336778899999999 9999999999999999999999999999999998999999999999999999
Q ss_pred cCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCCCccccccceeeccCC-CCCCCCCCCCCCCCCCCCCccccCC
Q 025237 101 YQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSP-SQSYCDDSYKYTYPCTPGAEYYGRG 179 (256)
Q Consensus 101 f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~G~~~wglcy~~E~~~-~~~YC~~~~~~~yPC~pGk~Y~GRG 179 (256)
|| +|+++|+..+.||||||||||++|||++||..+++|++.|+|||++|+.. ...||+.+++..|||++||.|||||
T Consensus 101 fp--~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG 178 (286)
T KOG4742|consen 101 FP--EFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGPFYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRG 178 (286)
T ss_pred cc--cccccCcccccchhhhhhhhhheecccCcccccCCCccccCcccccccChhhhccCCcccceEeecCCCCcccccC
Confidence 99 99999999999999999999999999999999999999999999999998 7899999864339999999999999
Q ss_pred ccccccccchHHHHhhhcCCc----------------------------------------------------cCCCCC-
Q 025237 180 AIPIYWNYNYGATGEALKADL----------------------------------------------------VCGQGD- 206 (256)
Q Consensus 180 pIQLSwNyNYg~ag~aLg~DL----------------------------------------------------ECg~g~- 206 (256)
+||||||||||+||++|++|| ||++++
T Consensus 179 ~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alWfwmt~~~p~~~~~a~~~~~gFGaTt~~Ing~~EC~~~~~ 258 (286)
T KOG4742|consen 179 PIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALWFWMTPVRPVLNDFAAYDTPGFGATTRAINGDLECGGGNL 258 (286)
T ss_pred cccccccccccHhHhhcCchhhcCcchhccCchhhhheeeeeeccCCchhhhhhhcccCCCcchhhhhhccceeccCCCC
Confidence 999999999999999999998 999887
Q ss_pred chhHHHHHHHHHHHHHHhCCCCcCCCCCCCCCc
Q 025237 207 IDAMNNIVSHYLYYLDLLGVGREQAGPNEELSC 239 (256)
Q Consensus 207 ~~~~~~RI~~Yk~yc~~lGV~~e~~G~~~nL~C 239 (256)
++.+++||+||++||++|||+ ||| ||+|
T Consensus 259 ~~~~~~Ri~~y~~~c~~fGv~---pG~--nLsC 286 (286)
T KOG4742|consen 259 DGVKARRIKYYLAYCGLFGVN---PGP--NLSC 286 (286)
T ss_pred CcchhHHHHHHHHHHHhhCCC---CCC--CCCC
Confidence 556667999999999999999 995 4999
No 2
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=2.4e-57 Score=406.94 Aligned_cols=166 Identities=42% Similarity=0.846 Sum_probs=141.5
Q ss_pred ccCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhhcCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCCCcccc
Q 025237 65 YFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAW 144 (256)
Q Consensus 65 iiT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~G~~~w 144 (256)
|||+++||+|||+||++.|++++||||++||+|++.|| +|+++|+++++||||||||||++|||+++|...+.++++|
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp--~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~ 78 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFP--AFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAW 78 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTST--TTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGG
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCc--hhccCccHHHHHHHHHhhhcccchhccccccccccccccc
Confidence 79999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ccceeeccCCCCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHHhhhcCCc------------------------
Q 025237 145 GLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADL------------------------ 200 (256)
Q Consensus 145 glcy~~E~~~~~~YC~~~~~~~yPC~pGk~Y~GRGpIQLSwNyNYg~ag~aLg~DL------------------------ 200 (256)
++|+.+|..+...||.++ .+|||.+|++|||||||||||||||+++|++|++||
T Consensus 79 gyc~~~e~~~~~~y~~~~--~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wfW~~ 156 (232)
T PF00182_consen 79 GYCYKREKGANSDYCNRN--GNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWFWMT 156 (232)
T ss_dssp TTS-SB-SS-SSGG--TT--SSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHHHHH
T ss_pred ccccccccCCccccccCc--cCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhheee
Confidence 999999998888999985 369999999999999999999999999999999999
Q ss_pred ------------------------------------------cCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCCCCCCC
Q 025237 201 ------------------------------------------VCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELS 238 (256)
Q Consensus 201 ------------------------------------------ECg~g~~~~~~~RI~~Yk~yc~~lGV~~e~~G~~~nL~ 238 (256)
||++++++++++||+|||+||++|||+ || +||+
T Consensus 157 ~~~~~ps~h~vi~~~w~p~~~~~~~~r~~gfG~t~~iINgg~Ec~~~~~~~~~~Ri~~y~~~~~~~~v~---~g--~nl~ 231 (232)
T PF00182_consen 157 PQPPKPSCHDVITGQWTPSAADLAAGRVPGFGATTNIINGGLECGGGNTDQVQNRIGYYKRYCDMLGVD---PG--DNLD 231 (232)
T ss_dssp SBTTBSSHHHHHTTSS-HHHHHHHTTTTSSHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHT---------S---
T ss_pred cCCCccCcchhcccccCCchhhhhhccCCCcchhhhhccCccccCCCCchHHhHHHHHHHHHHHHhCCC---CC--CCCC
Confidence 999999999999999999999999999 99 8899
Q ss_pred c
Q 025237 239 C 239 (256)
Q Consensus 239 C 239 (256)
|
T Consensus 232 C 232 (232)
T PF00182_consen 232 C 232 (232)
T ss_dssp -
T ss_pred C
Confidence 9
No 3
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=1.3e-55 Score=395.37 Aligned_cols=164 Identities=46% Similarity=0.916 Sum_probs=157.8
Q ss_pred cCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhhcCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCCCccccc
Q 025237 66 FQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATGGPLAWG 145 (256)
Q Consensus 66 iT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~G~~~wg 145 (256)
||+++||+||++|++..||+++||||++||+|+++|| +|+++|+++++||||||||||++|||+++|..++.+++.||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp--~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g 78 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFP--GFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWG 78 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhcc--ccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCC
Confidence 6899999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cceeeccCCCCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHHhhhcCCc-------------------------
Q 025237 146 LCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADL------------------------- 200 (256)
Q Consensus 146 lcy~~E~~~~~~YC~~~~~~~yPC~pGk~Y~GRGpIQLSwNyNYg~ag~aLg~DL------------------------- 200 (256)
+|+++|+++...+|.. .+|||.+|++|||||+|||||||||+++|++|+.||
T Consensus 79 ~c~~~e~~~~~~~~~~---~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~WfW~t~ 155 (230)
T cd00325 79 YCDKSETGPPSSYCDP---AQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWFWMTP 155 (230)
T ss_pred ccccccCCCccccccc---CCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhheeeC
Confidence 9999999987788887 369999999999999999999999999999999998
Q ss_pred -----------------------------------------cCCCCCchhHHHHHHHHHHHHHHhCCCCcCCCCCCCCCc
Q 025237 201 -----------------------------------------VCGQGDIDAMNNIVSHYLYYLDLLGVGREQAGPNEELSC 239 (256)
Q Consensus 201 -----------------------------------------ECg~g~~~~~~~RI~~Yk~yc~~lGV~~e~~G~~~nL~C 239 (256)
||++++.+++++||+||++||++|||+ || +||+|
T Consensus 156 ~~~k~s~h~vi~g~w~p~~~d~a~~~~~gfg~tt~iINGg~EC~~~~~~~~~~Ri~~Y~~~~~~lgv~---~g--~nL~C 230 (230)
T cd00325 156 QGPKPSCHDVITGTWTPSAADTAAGRGPGFGATTNIINGGLECGGGNPDQVQNRIGYYKRYCDMLGVS---PG--DNLDC 230 (230)
T ss_pred CCCCCCcceeeccCcCCchhhhhccccCChhhhheeecCCcccCCCCchHHHHHHHHHHHHHHHhCCC---CC--CCCCC
Confidence 999998999999999999999999999 88 88999
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=99.52 E-value=1.4e-14 Score=127.11 Aligned_cols=125 Identities=21% Similarity=0.165 Sum_probs=82.7
Q ss_pred cccCHHHHHHHHhcCCCCccccCCcchhHHHHHHhhhcCCCCCCCCCCcchhhHHHHHHhhhhccccCCCccccCC----
Q 025237 64 DYFQVYQFENFFSKRNTPVAHAVGFWDYQSFITATVKYQPLGFGTTGTKLDKMKEICAFLAHVGCKTSCGYGVATG---- 139 (256)
Q Consensus 64 ~iiT~~~F~~lfp~rn~~~c~a~gfYTY~aFi~Aa~~f~~~~Fg~tG~~~~~kRElAAFLAqv~HET~gg~~~A~~---- 139 (256)
..||+.+|.+|+|+... .| ..++.|+....+ .|+ ++++.++|+||||+.|||+|.-...|.
T Consensus 2 ~~i~e~~~~ki~p~a~k------~~---~~v~~al~~~l~-~~g-----i~~p~r~AmFlAQ~~HESggf~rl~EnlnYS 66 (206)
T COG3179 2 KTITEVDLRKIFPKARK------EF---VDVIVALQPALD-EAG-----ITTPLRQAMFLAQVMHESGGFTRLDENLNYS 66 (206)
T ss_pred cchhHHHHHHhcchhhh------hh---HHHHHHHHHHHH-Hhc-----CCCHHHHHHHHHHHhhhcCCceeehhhcchH
Confidence 35899999999998643 22 333444443321 455 456899999999999999975444442
Q ss_pred ---Cccccccceeecc-----CC------CCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHHhhhcCCccCC
Q 025237 140 ---GPLAWGLCYNHEM-----SP------SQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKADLVCG 203 (256)
Q Consensus 140 ---G~~~wglcy~~E~-----~~------~~~YC~~~~~~~yPC~pGk~Y~GRGpIQLSwNyNYg~ag~aLg~DLECg 203 (256)
-.-+|+-+|..+. .. ...|-.+..+..---.+||.|+|||.||||+..||..++++|+.|||=+
T Consensus 67 aq~L~~tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~ 144 (206)
T COG3179 67 AQGLLQTFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVAN 144 (206)
T ss_pred HHHHHHhccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCC
Confidence 2346666665332 11 0233333211111235789999999999999999999999999999533
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=98.98 E-value=1.6e-10 Score=91.15 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=48.4
Q ss_pred HHHhhhhccccCCCccccCCCccccccceeeccCCCCCCCCCCCCCCCCCCCCCccccCCccccccccchHHHHhhhcCC
Q 025237 120 CAFLAHVGCKTSCGYGVATGGPLAWGLCYNHEMSPSQSYCDDSYKYTYPCTPGAEYYGRGAIPIYWNYNYGATGEALKAD 199 (256)
Q Consensus 120 AAFLAqv~HET~gg~~~A~~G~~~wglcy~~E~~~~~~YC~~~~~~~yPC~pGk~Y~GRGpIQLSwNyNYg~ag~aLg~D 199 (256)
|+|+++.+||+.+++. .++ ..|| ||.+|+.|+|||+||++|||||+.++++|++|
T Consensus 1 a~~~~i~~~E~~~~~~-------------~~~----~Gy~--------~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~ 55 (105)
T cd00442 1 AIIDMLASSEGTDLKA-------------YKD----RGHG--------TLNPGERGYGIGLYQLTSRWSDAYRARGIGLK 55 (105)
T ss_pred ChhhhhhhcccCCCcc-------------ccc----CCCC--------CCCCCCcccccCceeeeeccCccccccccCcc
Confidence 5789999999995432 222 1244 78889999999999999999999999999999
Q ss_pred ccCCC
Q 025237 200 LVCGQ 204 (256)
Q Consensus 200 LECg~ 204 (256)
+.+..
T Consensus 56 ~~~~~ 60 (105)
T cd00442 56 LLAQL 60 (105)
T ss_pred hhcCc
Confidence 86553
No 6
>PF00187 Chitin_bind_1: Chitin recognition protein; InterPro: IPR001002 A number of plant and fungal proteins that bind N-acetylglucosamine (e.g. solanaceous lectins of tomato and potato, plant endochitinases, the wound-induced proteins: hevein, win1 and win2, and the Kluyveromyces lactis killer toxin alpha subunit) contain this domain []. The domain may occur in one or more copies and is thought to be involved in recognition or binding of chitin subunits [, ]. In chitinases, as well as in the potato wound-induced proteins, the 43-residue domain directly follows the signal sequence and is therefore at the N terminus of the mature protein; in the killer toxin alpha subunit it is located in the central section of the protein. ; GO: 0008061 chitin binding; PDB: 9WGA_B 2WGC_B 1ULK_B 2UVO_B 1WGC_B 2CWG_A 2X3T_C 4AML_B 7WGA_B 1ZWU_A ....
Probab=95.38 E-value=0.0044 Score=42.25 Aligned_cols=23 Identities=22% Similarity=0.686 Sum_probs=17.9
Q ss_pred hhccCCcCCCCCCCCCCCCccccC
Q 025237 36 KKLKGKKVCIKGWECPTWSKFCCN 59 (256)
Q Consensus 36 ~~~~g~~~c~~~~ccs~~~~yc~~ 59 (256)
+.+++++.||.++|||+| .||+.
T Consensus 5 G~~~~~~~Cp~~~CCS~~-G~CG~ 27 (40)
T PF00187_consen 5 GRQAGGATCPNGLCCSQY-GYCGT 27 (40)
T ss_dssp SGGGTTBBSGGG-EEETT-SBEES
T ss_pred ccCcCCCcCCCCCccCCC-CcccC
Confidence 356789999999999998 66653
No 7
>smart00270 ChtBD1 Chitin binding domain.
Probab=93.57 E-value=0.048 Score=36.82 Aligned_cols=22 Identities=27% Similarity=0.705 Sum_probs=17.8
Q ss_pred hccCCcCCCCCCCCCCCCccccC
Q 025237 37 KLKGKKVCIKGWECPTWSKFCCN 59 (256)
Q Consensus 37 ~~~g~~~c~~~~ccs~~~~yc~~ 59 (256)
.+++++.|+.++|||+| .||+.
T Consensus 4 ~~~g~~~C~~~~CCS~~-G~CG~ 25 (38)
T smart00270 4 SQAGGKVCPNNLCCSQF-GYCGS 25 (38)
T ss_pred CCCCCCcCCCCCccCCC-cCccC
Confidence 46789999999999997 55543
No 8
>cd00035 ChtBD1 Chitin binding domain, involved in recognition or binding of chitin subunits; fold analogous to hevein; occurs in plant and fungal proteins that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins, and K.lactis killer toxin alpha subunit, occurs singly or multiply
Probab=86.79 E-value=0.46 Score=32.13 Aligned_cols=21 Identities=24% Similarity=0.667 Sum_probs=17.2
Q ss_pred hccCCcCCCCCCCCCCCCcccc
Q 025237 37 KLKGKKVCIKGWECPTWSKFCC 58 (256)
Q Consensus 37 ~~~g~~~c~~~~ccs~~~~yc~ 58 (256)
.+++++.|+.+.|||+| .||+
T Consensus 4 ~~~~~~~C~~~~CCS~~-G~CG 24 (40)
T cd00035 4 RQAGGGGCPPGLCCSQF-GYCG 24 (40)
T ss_pred ccCCCCcCCCCcccccc-cccc
Confidence 46788999999999997 5554
No 9
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=71.55 E-value=2.5 Score=30.99 Aligned_cols=13 Identities=38% Similarity=0.634 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 025237 10 MTLTVALVLALAV 22 (256)
Q Consensus 10 ~~~~~~~~~~~~~ 22 (256)
|+|+++|||++|.
T Consensus 1 mKLt~vliVavLl 13 (75)
T PF02950_consen 1 MKLTCVLIVAVLL 13 (75)
T ss_dssp -------------
T ss_pred CCcchHHHHHHHH
Confidence 5677555555543
No 10
>PRK14877 conjugal transfer mating pair stabilization protein TraN; Provisional
Probab=58.20 E-value=10 Score=40.81 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=36.7
Q ss_pred hhhhccCCcCCCC--CCCCCCC-------------Ccccc-CCCcccccCHHHHHHHHhcCCCCccccCCcchhHH
Q 025237 34 IVKKLKGKKVCIK--GWECPTW-------------SKFCC-NETISDYFQVYQFENFFSKRNTPVAHAVGFWDYQS 93 (256)
Q Consensus 34 ~~~~~~g~~~c~~--~~ccs~~-------------~~yc~-~~~v~~iiT~~~F~~lfp~rn~~~c~a~gfYTY~a 93 (256)
.+..+.+..+|-. -|||+.. ..||| ++.+++||.++-=.+|=.....+.|. || |-+.
T Consensus 881 kLA~Kr~~~lChyVGTy~CsKkl~lGf~GvCveKk~sYCCFNSkLARIIqEQGR~QLG~~pk~P~C~--Gf-T~eE 953 (1062)
T PRK14877 881 EASIHKNQKSCFTLDTERCVKYLNVGFTKKCVKKATDMCCYNSMLSRVIMQQAYPQLGIDPVASNCV--GL-SIKQ 953 (1062)
T ss_pred HHHHHhccCceEEecceeeeeeecccccceeeeecceeeecCCHHHHHHHHhhHHhcCCCCCCCCCC--Cc-CHHH
Confidence 3344566677755 3688862 67999 88899999988777764332345563 45 4443
No 11
>PF15182 OTOS: Otospiralin
Probab=46.75 E-value=14 Score=27.95 Aligned_cols=33 Identities=21% Similarity=0.666 Sum_probs=25.0
Q ss_pred CcchhHHHHHHhhhcCCCCCCCCCCcchhhHHHH-HHhhhhccccC
Q 025237 87 GFWDYQSFITATVKYQPLGFGTTGTKLDKMKEIC-AFLAHVGCKTS 131 (256)
Q Consensus 87 gfYTY~aFi~Aa~~f~~~~Fg~tG~~~~~kRElA-AFLAqv~HET~ 131 (256)
+||.|-.+.+.+.+|+ +-.|+| +||||.---++
T Consensus 26 DFW~YveyFrtlGAY~------------~indmARtfFAh~plG~t 59 (69)
T PF15182_consen 26 DFWNYVEYFRTLGAYN------------QINDMARTFFAHFPLGDT 59 (69)
T ss_pred HHHHHHHHHHHhccHH------------HHHHHHHHHHhhCccccc
Confidence 5899999999998887 455665 69999755444
No 12
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=38.61 E-value=22 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.4
Q ss_pred CCCcccccCHHHHHHHHhcCCC
Q 025237 59 NETISDYFQVYQFENFFSKRNT 80 (256)
Q Consensus 59 ~~~v~~iiT~~~F~~lfp~rn~ 80 (256)
++.+.+|||-++|.++||.+..
T Consensus 13 ~s~L~~iisl~qF~~LFPr~~~ 34 (67)
T PF09447_consen 13 PSSLPDIISLEQFRKLFPRRLR 34 (67)
T ss_pred cCccccccCHHHHHHHccccCC
Confidence 4689999999999999998764
No 13
>PHA02867 C-type lectin protein; Provisional
Probab=38.52 E-value=47 Score=29.05 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=23.3
Q ss_pred CcCCCCCCCCCCCCccc-----------------c--CCCcccccCHHHHHHHHhc
Q 025237 41 KKVCIKGWECPTWSKFC-----------------C--NETISDYFQVYQFENFFSK 77 (256)
Q Consensus 41 ~~~c~~~~ccs~~~~yc-----------------~--~~~v~~iiT~~~F~~lfp~ 77 (256)
.+.||+||- ++...| - ++++..|=++++.+-+...
T Consensus 46 ~~~CP~gWi--~~~~~CY~fs~~~~tW~~A~~~C~~~ga~La~I~s~eE~~Fl~~~ 99 (167)
T PHA02867 46 SKVCPDEWI--GYNSKCYYFTINETNWNDSKKLCDVMDSSLIRFDNIETLNFVSRY 99 (167)
T ss_pred CCCCCCCCE--EECCEEEEEeccccCHHHHHHHHhhCCCEECCcCCHHHHHHHHHc
Confidence 467999996 333445 2 4677777788887766543
No 14
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=35.80 E-value=44 Score=29.80 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=11.1
Q ss_pred cCCcCCCCCCCCCCCCccc
Q 025237 39 KGKKVCIKGWECPTWSKFC 57 (256)
Q Consensus 39 ~g~~~c~~~~ccs~~~~yc 57 (256)
-+...||++|= +++.-|
T Consensus 80 ~~~~~CP~~Wi--~~~~~C 96 (200)
T PF05473_consen 80 LGCGPCPKGWI--GYNNSC 96 (200)
T ss_pred ccCCCCCccce--eeCCEE
Confidence 35678999887 444444
No 15
>PRK09738 small toxic polypeptide; Provisional
Probab=34.35 E-value=55 Score=23.60 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=18.7
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHhhC
Q 025237 1 MKMKNGSVAMTLTVALVLALAVSLAN 26 (256)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (256)
|||..+.+-++|.++-+.+++...+.
T Consensus 1 mkmp~~~~~~~livvCiTvL~f~~l~ 26 (52)
T PRK09738 1 MKLPRSPLVWCVLIVCLTLLIFTYLT 26 (52)
T ss_pred CCCccceehhhHHHHHHHHHHHHHHc
Confidence 89999988888777766665544444
No 16
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=27.48 E-value=38 Score=25.77 Aligned_cols=11 Identities=45% Similarity=0.519 Sum_probs=5.8
Q ss_pred CCCcchhHHHH
Q 025237 3 MKNGSVAMTLT 13 (256)
Q Consensus 3 ~~~~~~~~~~~ 13 (256)
|.|-|++..|+
T Consensus 1 mnn~Si~VLla 11 (71)
T PF04202_consen 1 MNNLSIAVLLA 11 (71)
T ss_pred CCchhHHHHHH
Confidence 56656554433
No 17
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=27.33 E-value=47 Score=26.32 Aligned_cols=38 Identities=11% Similarity=0.222 Sum_probs=26.3
Q ss_pred ccCHHHHHHHHhcCCCC--------ccccCCcchhHHHHHHhhhcC
Q 025237 65 YFQVYQFENFFSKRNTP--------VAHAVGFWDYQSFITATVKYQ 102 (256)
Q Consensus 65 iiT~~~F~~lfp~rn~~--------~c~a~gfYTY~aFi~Aa~~f~ 102 (256)
|||+++.+.|-...... .=|.+|...|+.|++|+..||
T Consensus 35 IlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 35 ILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 77777777776544321 124566777899999998887
No 18
>PF06607 Prokineticin: Prokineticin; InterPro: IPR023569 The prokineticin family includes prokinectin itself and related proteins such as BM8 and the AVIToxins. The suprachiasmatic nucleus (SCN) controls the circadian rhythm of physiological and behavioural processes in mammals. It has been shown that prokineticin 2 (PK2), a cysteine-rich secreted protein, functions as an output molecule from the SCN circadian clock. PK2 messenger RNA is rhythmically expressed in the SCN, and the phase of PK2 rhythm is responsive to light entrainment. Molecular and genetic studies have revealed that PK2 is a gene that is controlled by a circadian clock []. The prokinectin domain is found in the prokinectin family and the hainantoxins, where it comprises the whole length of the protein. This domain is also found at the C terminus of some members of the Dickkopf family.; PDB: 1IMT_A 2KRA_A.
Probab=25.15 E-value=19 Score=28.93 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=8.9
Q ss_pred ccCCcCCCCCCCCCCC
Q 025237 38 LKGKKVCIKGWECPTW 53 (256)
Q Consensus 38 ~~g~~~c~~~~ccs~~ 53 (256)
.....-|..|+||..|
T Consensus 26 C~~d~dCg~G~CCA~~ 41 (97)
T PF06607_consen 26 CESDADCGPGTCCAVS 41 (97)
T ss_dssp -SSGGGT-TTEEECE-
T ss_pred ccCcCCCCCCceeCcc
Confidence 3344557888888875
No 19
>PRK14876 conjugal transfer mating pair stabilization protein TraN; Provisional
Probab=24.89 E-value=57 Score=35.51 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=26.9
Q ss_pred hhhhccCCcCCCC--CCCCCCC--------Ccccc-CCCcccccCHHHHHHH
Q 025237 34 IVKKLKGKKVCIK--GWECPTW--------SKFCC-NETISDYFQVYQFENF 74 (256)
Q Consensus 34 ~~~~~~g~~~c~~--~~ccs~~--------~~yc~-~~~v~~iiT~~~F~~l 74 (256)
.+....+.++|-. -+|.+++ ..||| ++.+++||.++-..+|
T Consensus 775 ~L~~kk~~~lc~yVGtyCskKvLGvCvekk~sYCcF~SkLARIIqeQGr~QL 826 (928)
T PRK14876 775 TMNAKRALKNCTYVGSYCKSKVLGACIEKREAYCCFNSPLSRIIQEQVRPQL 826 (928)
T ss_pred HHHHHhhcCceEEecCccccccceeEeeeceeEEEeCCHHHHHHHHHHHHHh
Confidence 3344455566633 3444443 78999 7889999998877665
No 20
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.64 E-value=63 Score=29.44 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHhhCCC
Q 025237 8 VAMTLTVALVLALAVSLANGD 28 (256)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ 28 (256)
++|.+++|||++++..|.-++
T Consensus 18 iaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 18 IAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred HHHHHHHHHHHHHhhhheecC
Confidence 466777777666664444433
No 21
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=20.82 E-value=1e+02 Score=23.33 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=14.8
Q ss_pred CcchhHHHHHHHHHHHHHHhh
Q 025237 5 NGSVAMTLTVALVLALAVSLA 25 (256)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~ 25 (256)
||-..|-++|++++.+++.+.
T Consensus 11 nGi~G~LIAvvLLLsIl~~lt 31 (66)
T PF13179_consen 11 NGITGMLIAVVLLLSILAFLT 31 (66)
T ss_pred cchHhHHHHHHHHHHHHHHHH
Confidence 566778888888777765443
No 22
>PHA03097 C-type lectin-like protein; Provisional
Probab=20.11 E-value=1.7e+02 Score=24.89 Aligned_cols=17 Identities=0% Similarity=-0.310 Sum_probs=11.6
Q ss_pred CCcccccCHHHHHHHHh
Q 025237 60 ETISDYFQVYQFENFFS 76 (256)
Q Consensus 60 ~~v~~iiT~~~F~~lfp 76 (256)
+++.+|=++++.+.+..
T Consensus 79 ~~La~I~~~~E~~fi~~ 95 (157)
T PHA03097 79 GILTLIDDQKEVLFVSR 95 (157)
T ss_pred CEEeeeCCHHHHHHHHH
Confidence 56777777777766654
Done!