Query 025238
Match_columns 255
No_of_seqs 157 out of 1227
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 03:53:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14831 undecaprenyl pyrophos 100.0 5.9E-51 1.3E-55 360.4 18.2 185 64-255 18-248 (249)
2 PRK14829 undecaprenyl pyrophos 100.0 1.2E-50 2.6E-55 357.5 18.6 185 64-255 12-242 (243)
3 PRK14836 undecaprenyl pyrophos 100.0 9.3E-51 2E-55 359.6 17.6 185 64-255 12-242 (253)
4 PRK14834 undecaprenyl pyrophos 100.0 4.1E-50 8.9E-55 354.5 19.4 185 64-255 12-242 (249)
5 PRK14830 undecaprenyl pyrophos 100.0 4.4E-50 9.5E-55 355.2 19.0 185 64-255 20-250 (251)
6 PRK14828 undecaprenyl pyrophos 100.0 1.4E-49 2.9E-54 353.0 19.4 189 64-255 24-256 (256)
7 PRK14832 undecaprenyl pyrophos 100.0 1.4E-49 2.9E-54 351.4 18.6 185 64-255 16-246 (253)
8 PRK14840 undecaprenyl pyrophos 100.0 1.7E-49 3.7E-54 350.2 19.2 185 64-255 16-250 (250)
9 PRK14827 undecaprenyl pyrophos 100.0 1.5E-49 3.3E-54 357.5 18.6 184 65-255 66-295 (296)
10 TIGR00055 uppS undecaprenyl di 100.0 2.3E-49 4.9E-54 345.1 18.0 180 68-254 1-226 (226)
11 PRK14838 undecaprenyl pyrophos 100.0 2.7E-49 5.8E-54 348.0 18.4 184 65-255 9-236 (242)
12 PRK14837 undecaprenyl pyrophos 100.0 3.3E-49 7.2E-54 344.3 17.6 181 64-255 4-230 (230)
13 PRK14842 undecaprenyl pyrophos 100.0 4.9E-49 1.1E-53 345.9 18.7 185 65-255 7-237 (241)
14 PRK14841 undecaprenyl pyrophos 100.0 5E-49 1.1E-53 344.8 18.6 183 64-255 1-229 (233)
15 PRK14835 undecaprenyl pyrophos 100.0 1.2E-48 2.5E-53 349.5 20.7 189 64-255 39-275 (275)
16 PRK14833 undecaprenyl pyrophos 100.0 4E-48 8.6E-53 339.1 18.5 182 65-255 3-231 (233)
17 COG0020 UppS Undecaprenyl pyro 100.0 4.5E-48 9.7E-53 340.6 18.9 184 65-255 15-244 (245)
18 PRK14839 undecaprenyl pyrophos 100.0 3.9E-47 8.5E-52 332.4 17.3 179 61-255 4-228 (239)
19 cd00475 CIS_IPPS Cis (Z)-Isopr 100.0 7.7E-47 1.7E-51 329.0 17.6 175 67-248 1-221 (221)
20 PRK10240 undecaprenyl pyrophos 100.0 2.8E-45 6E-50 320.5 17.2 168 81-255 22-221 (229)
21 PF01255 Prenyltransf: Putativ 100.0 3.6E-45 7.9E-50 320.0 13.6 175 73-255 1-223 (223)
22 PTZ00349 dehydrodolichyl dipho 100.0 1.3E-42 2.9E-47 313.8 17.2 185 64-250 17-308 (322)
23 KOG1602 Cis-prenyltransferase 100.0 1.6E-39 3.4E-44 283.0 16.7 184 64-255 34-266 (271)
24 KOG2818 Predicted undecaprenyl 100.0 1.2E-34 2.6E-39 253.1 18.6 235 13-255 4-263 (263)
25 PF07736 CM_1: Chorismate muta 68.3 9 0.00019 30.4 4.1 32 146-177 9-40 (118)
26 smart00549 TAFH TAF homology. 58.3 12 0.00027 28.3 3.1 45 148-202 17-61 (92)
27 TIGR01796 CM_mono_aroH monofun 56.3 13 0.00029 29.4 3.1 74 147-223 10-90 (117)
28 cd02185 AroH Chorismate mutase 55.7 14 0.0003 29.3 3.1 74 147-223 10-90 (117)
29 PF00763 THF_DHG_CYH: Tetrahyd 49.0 20 0.00043 28.0 3.1 54 65-121 27-80 (117)
30 PF13043 DUF3903: Domain of un 46.5 8.6 0.00019 24.1 0.5 9 247-255 15-23 (40)
31 PHA02679 ORF091 IMV membrane p 43.4 19 0.00042 24.4 1.9 16 20-35 37-52 (53)
32 TIGR02803 ExbD_1 TonB system t 42.6 86 0.0019 24.3 5.9 31 72-102 88-118 (122)
33 PHA03047 IMV membrane receptor 42.5 20 0.00043 24.3 1.8 16 20-35 37-52 (53)
34 PRK04239 hypothetical protein; 39.8 78 0.0017 24.8 5.1 45 151-200 61-105 (110)
35 TIGR02804 ExbD_2 TonB system t 39.6 67 0.0014 25.0 4.8 22 81-102 96-117 (121)
36 cd00954 NAL N-Acetylneuraminic 37.5 3E+02 0.0065 24.6 10.6 117 77-209 15-138 (288)
37 PF06269 DUF1029: Protein of u 37.3 24 0.00052 23.9 1.6 16 20-35 37-52 (53)
38 PHA02724 hydrophobic IMV membr 37.1 30 0.00064 23.5 2.0 16 20-35 37-52 (53)
39 COG4792 EscU Type III secretor 34.5 3.9E+02 0.0084 25.0 11.3 36 65-100 262-307 (349)
40 PRK14179 bifunctional 5,10-met 32.6 2.3E+02 0.0049 25.9 7.7 53 66-121 31-83 (284)
41 KOG2683 Sirtuin 4 and related 32.5 1.2E+02 0.0027 27.2 5.7 67 180-253 29-96 (305)
42 PRK14178 bifunctional 5,10-met 31.6 2.6E+02 0.0055 25.5 7.8 54 65-121 24-77 (279)
43 KOG3415 Putative Rab5-interact 30.9 2.6E+02 0.0057 22.2 6.7 36 5-40 39-74 (129)
44 PRK14168 bifunctional 5,10-met 29.6 2.2E+02 0.0048 26.2 7.1 52 67-121 33-84 (297)
45 PLN02616 tetrahydrofolate dehy 29.3 2.1E+02 0.0045 27.2 7.0 53 66-121 102-154 (364)
46 COG5127 Vacuolar H+-ATPase V1 28.7 4.9E+02 0.011 24.3 12.6 68 45-118 295-363 (383)
47 COG2118 DNA-binding protein [G 28.5 1.3E+02 0.0029 23.7 4.7 38 151-193 64-101 (116)
48 PRK14194 bifunctional 5,10-met 28.4 2.9E+02 0.0064 25.4 7.7 53 66-121 32-84 (301)
49 PRK14174 bifunctional 5,10-met 28.3 2.5E+02 0.0054 25.8 7.2 53 66-121 30-82 (295)
50 PRK11024 colicin uptake protei 27.4 1.4E+02 0.003 23.9 4.9 31 72-102 106-136 (141)
51 TIGR02801 tolR TolR protein. T 27.3 1.3E+02 0.0029 23.3 4.8 31 72-102 96-126 (129)
52 cd05014 SIS_Kpsf KpsF-like pro 27.1 1.4E+02 0.0031 22.6 4.8 39 66-106 46-84 (128)
53 PTZ00254 40S ribosomal protein 26.3 4.3E+02 0.0094 23.7 8.2 74 64-173 116-190 (249)
54 PRK14188 bifunctional 5,10-met 26.2 2.7E+02 0.0058 25.5 7.1 53 66-121 31-83 (296)
55 PLN03044 GTP cyclohydrolase I; 26.0 78 0.0017 27.1 3.3 28 68-95 87-114 (188)
56 PF01984 dsDNA_bind: Double-st 25.2 2.1E+02 0.0045 22.2 5.3 38 152-194 57-94 (107)
57 PRK14177 bifunctional 5,10-met 24.7 3.4E+02 0.0073 24.8 7.4 51 68-121 34-84 (284)
58 PRK14181 bifunctional 5,10-met 24.5 3.5E+02 0.0075 24.8 7.4 54 65-121 24-77 (287)
59 PRK14191 bifunctional 5,10-met 24.4 3.7E+02 0.008 24.6 7.5 53 66-121 30-82 (285)
60 PRK09482 flap endonuclease-lik 23.7 3.1E+02 0.0067 24.6 6.8 37 66-102 46-103 (256)
61 PRK14169 bifunctional 5,10-met 23.5 4E+02 0.0087 24.3 7.6 53 66-121 29-81 (282)
62 PF01206 TusA: Sulfurtransfera 23.4 1.5E+02 0.0032 20.3 3.9 36 69-109 29-64 (70)
63 PRK14192 bifunctional 5,10-met 23.2 3.3E+02 0.0072 24.7 7.0 36 66-101 32-67 (283)
64 PRK11267 biopolymer transport 23.1 1.8E+02 0.004 23.2 4.9 22 81-102 111-132 (141)
65 PRK14173 bifunctional 5,10-met 22.9 4.2E+02 0.0091 24.2 7.6 52 67-121 29-80 (287)
66 PRK14184 bifunctional 5,10-met 22.6 3.6E+02 0.0079 24.6 7.2 42 66-108 30-71 (286)
67 PF07531 TAFH: NHR1 homology t 22.6 65 0.0014 24.7 1.9 42 151-202 21-62 (96)
68 PF09633 DUF2023: Protein of u 22.0 1.7E+02 0.0037 22.6 4.1 60 94-165 11-70 (101)
69 cd01477 vWA_F09G8-8_type VWA F 21.9 1.3E+02 0.0029 25.4 4.0 38 65-102 130-167 (193)
70 PRK14189 bifunctional 5,10-met 21.8 4.5E+02 0.0098 24.0 7.6 43 66-109 31-73 (285)
71 PF13305 WHG: WHG domain; PDB: 21.7 1.2E+02 0.0027 20.8 3.3 19 19-37 59-77 (81)
72 cd05009 SIS_GlmS_GlmD_2 SIS (S 21.6 1.8E+02 0.0039 22.6 4.5 39 67-106 61-99 (153)
73 PRK14190 bifunctional 5,10-met 21.6 3.2E+02 0.0069 25.0 6.6 53 66-121 31-83 (284)
74 cd08351 ChaP_like ChaP, an enz 21.6 1.6E+02 0.0034 22.1 4.0 26 68-99 60-85 (123)
75 cd00003 PNPsynthase Pyridoxine 20.8 1.8E+02 0.0039 25.9 4.6 38 66-104 83-130 (234)
76 TIGR00539 hemN_rel putative ox 20.6 4.4E+02 0.0095 24.3 7.5 42 80-121 133-174 (360)
77 PF02739 5_3_exonuc_N: 5'-3' e 20.6 1.2E+02 0.0026 25.3 3.3 37 66-102 50-105 (169)
78 PRK14187 bifunctional 5,10-met 20.5 4.4E+02 0.0096 24.2 7.3 53 66-121 31-83 (294)
79 PRK14176 bifunctional 5,10-met 20.5 5.5E+02 0.012 23.5 7.9 42 66-108 37-78 (287)
No 1
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5.9e-51 Score=360.39 Aligned_cols=185 Identities=16% Similarity=0.255 Sum_probs=160.7
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.+| ||+.+..
T Consensus 18 ~~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~ 97 (249)
T PRK14831 18 QRLPKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLR 97 (249)
T ss_pred CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHH
Confidence 3689999999999975 189999999999999999999999998 999999876 4443321
Q ss_pred -------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|.. ..++.|+++++++||+|.+||||+||++|++++++++ ++|.+++++
T Consensus 98 ~~~~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v-~~g~l~~~~-- 174 (249)
T PRK14831 98 RELEELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQV-QQGELDPSE-- 174 (249)
T ss_pred HHHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh--
Confidence 11 12221 1234688999999999999999999999999998875 667887776
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +.+.|||||+|||||+.|||||||||++||||||++.+ |+|++.+|.+||.+|++|+||||+
T Consensus 175 --i~e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~dl~~al~~y~~R~RRfG~ 248 (249)
T PRK14831 175 --IDENLFESELY--TAGIKDPDLLIRTSGEMRISNFLLWQLAYAEIYVTDVLWPDFDRDEFHKALLDYQSRERRFGG 248 (249)
T ss_pred --CCHHHHHHhhc--cCCCCCCCEEEeCCCCccccCchhhhhhceeEEECCCCCCcCCHHHHHHHHHHHHhcccCCCC
Confidence 78999999998 46789999999999999999999999999999999985 999999999999999999999997
No 2
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.2e-50 Score=357.47 Aligned_cols=185 Identities=19% Similarity=0.278 Sum_probs=160.0
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +||||+.+| ||+.+..
T Consensus 12 ~~~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~ 91 (243)
T PRK14829 12 NKLPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIH 91 (243)
T ss_pred CCCCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHH
Confidence 3789999999999985 289999999999999999999999996 999999875 4443321
Q ss_pred -------cC-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------AT-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|. + ..+..|.++++++||+|++||||+||++|++++++++ +.|.+++++
T Consensus 92 ~~~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~-~~g~~~~~~-- 168 (243)
T PRK14829 92 RRREQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREV-RDGKISGDR-- 168 (243)
T ss_pred HHHHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh--
Confidence 11 1222 1 1234688899999999999999999999999998875 667787776
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.+++.|+ +.+.|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++|+||||+
T Consensus 169 --i~e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~al~~y~~r~rRfG~ 242 (243)
T PRK14829 169 --VTEKMISDHLY--NPDMPDVDLFLRTSGEQRTSNFLLWQSAYAELDFVPKLFPDFGRDDLWAAIDEYAHRDRRFGG 242 (243)
T ss_pred --CCHHHHHHHhc--cCCCCCCCEEEEcCCcccccCchHHhHhheEEEeCCCCCCcCCHHHHHHHHHHHhccCccCCC
Confidence 78999999998 46899999999999999999999999999999999986 999999999999999999999996
No 3
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=9.3e-51 Score=359.63 Aligned_cols=185 Identities=18% Similarity=0.273 Sum_probs=161.1
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhhc--
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA-- 123 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~~-- 123 (255)
.++|+|||||||||++ .|++++.+++.||.+.||++||+|+|+ +||||+.++ ||+.+...
T Consensus 12 ~~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~ 91 (253)
T PRK14836 12 ENIPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALD 91 (253)
T ss_pred CCCCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999975 289999999999999999999999998 999999876 45433211
Q ss_pred --------C-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 124 --------T-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 124 --------~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
+ .+|+. ..++.|.++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 92 ~~~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~-~~g~l~~~~-- 168 (253)
T PRK14836 92 REVDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREV-AAGKLAPDE-- 168 (253)
T ss_pred HHHHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChHh--
Confidence 1 12221 1234688999999999999999999999999998875 667787776
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.+++.|+ +.++|||||||||||+.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||+
T Consensus 169 --i~e~~i~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~d~~~aL~~y~~R~RRfG~ 242 (253)
T PRK14836 169 --IDEALLAQHLA--LADLPEPDLFIRTSGELRISNFLLWQLAYTELYFTDTLWPDFDAQELQQALEDYASRERRFGK 242 (253)
T ss_pred --CCHHHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHHHhheEEEeCCCCCCcCCHHHHHHHHHHHHccCccCCC
Confidence 88999999998 46899999999999999999999999999999999986 999999999999999999999996
No 4
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.1e-50 Score=354.51 Aligned_cols=185 Identities=16% Similarity=0.255 Sum_probs=160.6
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+.+..
T Consensus 12 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~ 91 (249)
T PRK14834 12 MSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIR 91 (249)
T ss_pred CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHH
Confidence 4789999999999985 289999999999999999999999997 999999875 4543321
Q ss_pred -------cCC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------ATL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~~-----------~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.++ +|. + ..+..|.++++++||+|.+||||+||++|+|++++++ +.|++++++
T Consensus 92 ~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~-~~g~~~~~d-- 168 (249)
T PRK14834 92 RDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREV-AEGRLDPAS-- 168 (249)
T ss_pred HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhh--
Confidence 111 222 1 1234688999999999999999999999999998875 667777776
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.+++.|+ +...|||||||||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++|+||||+
T Consensus 169 --I~e~~i~~~L~--~~~~pdpDLLIRTsGe~RLSnFLlWQ~~yaElyF~~~lWPdf~~~d~~~al~~y~~r~rRfG~ 242 (249)
T PRK14834 169 --IDAETISANLD--TADIPDPDLIIRTSGEQRLSNFLLWQAAYSELLFVPIHWPDFDKAALEAAIEEYARRERRFGG 242 (249)
T ss_pred --CCHHHHHHHhc--cCCCCCCCEEEEcCCcccccCChHHhHhheEEEeCCCCCCcCCHHHHHHHHHHHHhcCccCCC
Confidence 88999999998 46889999999999999999999999999999999986 999999999999999999999996
No 5
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.4e-50 Score=355.20 Aligned_cols=185 Identities=20% Similarity=0.262 Sum_probs=160.2
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.++++||.+.||++||+|+|+ +||||+.++ ||+.+..
T Consensus 20 ~~~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~ 99 (251)
T PRK14830 20 GNIPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLD 99 (251)
T ss_pred CCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999985 289999999999999999999999998 999999875 4433221
Q ss_pred -------cC-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------AT-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|. . ..+..|.++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 100 ~~~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v-~~g~l~~~~-- 176 (251)
T PRK14830 100 KFVPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDV-LDGKLNPED-- 176 (251)
T ss_pred HHHHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh--
Confidence 11 1222 1 1234688999999999999999999999999998876 667777765
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.+++.|+ +.+.|||||+|||||+.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||+
T Consensus 177 --I~e~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~aL~~y~~r~rrfG~ 250 (251)
T PRK14830 177 --ITEELISNYLM--TKGLPDPDLLIRTSGELRLSNFLLWQLAYSEFYFTDVLWPDFDEEELLKAIKDYQSRQRRFGG 250 (251)
T ss_pred --CCHHHHHHHhC--cCCCCCCCEEEeCCCCCcccCChHHHHcceEEEECCCCCCcCCHHHHHHHHHHHHhcccCCCC
Confidence 78999999998 46789999999999999999999999999999999986 999999999999999999999997
No 6
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.4e-49 Score=352.96 Aligned_cols=189 Identities=17% Similarity=0.260 Sum_probs=162.7
Q ss_pred CCCCCeEEEEeeCCCC---------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh--
Q 025238 64 IDKLRYLAIVIESEEA---------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN-- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~---------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~-- 122 (255)
.++|+|||||||||++ .|++++.++++||.+.||++||+|+|| +||+|+.++ ||+.+..
T Consensus 24 ~~~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l 103 (256)
T PRK14828 24 AQVPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVV 103 (256)
T ss_pred CCCCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHH
Confidence 3689999999999954 278999999999999999999999997 999999875 4543321
Q ss_pred -----cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccc
Q 025238 123 -----ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (255)
Q Consensus 123 -----~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~ 180 (255)
.+. +|.. ..+..|.++++++||+|.+||||+||++|++++++++ +.|.+++++++.+
T Consensus 104 ~~~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~~~~~ 182 (256)
T PRK14828 104 RQLAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEH-KDKGTSIDELAES 182 (256)
T ss_pred HHHHHhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhhcccc
Confidence 111 2221 1234688999999999999999999999999999886 4566888776667
Q ss_pred cCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 181 FTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 181 ~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +...|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++++|||||
T Consensus 183 i~e~~i~~~L~--~~~~P~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~RRfG~ 256 (256)
T PRK14828 183 VTVDAISTHLY--TGGQPDPDLVIRTSGEQRLSGFMLWQSAHSEYYFCETYWPAFRKVDFLRALRDYSQRERRFGK 256 (256)
T ss_pred CCHHHHHHHhc--cCCCCCCCEEEeCCCCCcccCChHHHhhheEEEeCCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 89999999998 46789999999999999999999999999999999986 999999999999999999999997
No 7
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.4e-49 Score=351.44 Aligned_cols=185 Identities=15% Similarity=0.234 Sum_probs=160.3
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
..+|+|||||||||++ .|++++.++++||.+.||++||+|+|| +||||+.+| ||+.+..
T Consensus 16 ~~iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 95 (253)
T PRK14832 16 QKIPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLR 95 (253)
T ss_pred CCCCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999985 289999999999999999999999998 999999876 4543321
Q ss_pred -------cC-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------AT-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|. + ..++.|.++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 96 ~~~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v-~~g~~~~~~-- 172 (253)
T PRK14832 96 RELAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELV-QQGKLSADA-- 172 (253)
T ss_pred HHHHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhh--
Confidence 11 1222 1 1234688999999999999999999999999998775 567777765
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +.+.|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++++||||+
T Consensus 173 --i~e~~i~~~L~--~~~~Pd~DLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~R~RRfG~ 246 (253)
T PRK14832 173 --VNEQLVEQHLY--TADTPPPDLLIRTSGEMRLSNFLLWQMAYTEMYFTDILWPDFDRAAFHQALLSYQKRDRRFGQ 246 (253)
T ss_pred --CCHHHHHHhhC--cCCCCCCCEEEECCCcccccCcHHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHhccccCCC
Confidence 78999999998 46899999999999999999999999999999999986 999999999999999999999997
No 8
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.7e-49 Score=350.24 Aligned_cols=185 Identities=21% Similarity=0.275 Sum_probs=160.3
Q ss_pred CCCCCeEEEEeeCCCC-----C-------------ChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhh
Q 025238 64 IDKLRYLAIVIESEEA-----Y-------------HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN 121 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~-----~-------------~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~ 121 (255)
..+|+|||||||||++ + |++++.+++.||.+.||++||+|+|| +||||+.++ ||+.+.
T Consensus 16 ~~~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~ 95 (250)
T PRK14840 16 QSLPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFN 95 (250)
T ss_pred CCCCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHH
Confidence 4789999999999964 1 78999999999999999999999998 999999886 454332
Q ss_pred hc----------C-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCc
Q 025238 122 NA----------T-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGK 174 (255)
Q Consensus 122 ~~----------~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~ 174 (255)
.. + .+|. + ..+..|.++++++||+|.+||||+||++|++++++++ +.|++++
T Consensus 96 ~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~~~~~~ 174 (250)
T PRK14840 96 SQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDL-ANKKISS 174 (250)
T ss_pred HHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHHH-HhCCCCh
Confidence 11 1 1222 1 1234688999999999999999999999999998875 6677777
Q ss_pred cccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhc
Q 025238 175 IQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNY 253 (255)
Q Consensus 175 ~~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRf 253 (255)
++ ++++.+++.|+ +.+.|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++++|||
T Consensus 175 ~~----i~~~~i~~~L~--~~~~pdpDLlIRTsGe~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~df~~al~~y~~R~Rrf 248 (250)
T PRK14840 175 DD----ISEELISSYLD--TSGLPDPDLLIRTGGEMRVSNFLLWQIAYTELYVTDVLWPDFTPNDLLEAIKTYQQRSRRG 248 (250)
T ss_pred hh----CCHHHHHHHhc--cCCCCCCCEEEeCCCCcccccchHHhHhceeEEECCCCCCcCCHHHHHHHHHHHhcccCcC
Confidence 65 78899999998 46899999999999999999999999999999999986 9999999999999999999999
Q ss_pred CC
Q 025238 254 GK 255 (255)
Q Consensus 254 Gk 255 (255)
||
T Consensus 249 G~ 250 (250)
T PRK14840 249 GK 250 (250)
T ss_pred CC
Confidence 97
No 9
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.5e-49 Score=357.51 Aligned_cols=184 Identities=18% Similarity=0.260 Sum_probs=159.6
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh----
Q 025238 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~---- 122 (255)
.+|+|||||||||++ .|++++.++++||.++||++||+|+|| +||||+.+| ||+.+..
T Consensus 66 ~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~ 145 (296)
T PRK14827 66 RLPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRR 145 (296)
T ss_pred CCCCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHH
Confidence 689999999999985 189999999999999999999999996 999999876 4443321
Q ss_pred ------cCC-----------CCc-hh-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 025238 123 ------ATL-----------FEE-AG-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (255)
Q Consensus 123 ------~~~-----------~~~-~~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~ 179 (255)
.++ +|. +. .++.|.++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 146 ~~~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v-~~g~l~~~~--- 221 (296)
T PRK14827 146 RRDNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREA-AAGRLNPER--- 221 (296)
T ss_pred HHHHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChhh---
Confidence 111 221 11 234588999999999999999999999999998876 567777776
Q ss_pred ccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 180 ~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +.++|||||+|||||+.|||||||||++||||||++++ |+|++.||.+||.+|++|+||||+
T Consensus 222 -I~e~~i~~~L~--t~~~PdpDLlIRTsGE~RLSnFLLWQ~ayaEl~F~d~lWPdF~~~dl~~al~~y~~R~RRfG~ 295 (296)
T PRK14827 222 -ITESTIARHLQ--RPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRNRRFGS 295 (296)
T ss_pred -ccHHHHHHHhc--cCCCCCCCEEEecCCcccccCchHhhhhheEEEecCCCCccCCHHHHHHHHHHHhhccccCCC
Confidence 78999999998 46899999999999999999999999999999999985 999999999999999999999996
No 10
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=100.00 E-value=2.3e-49 Score=345.09 Aligned_cols=180 Identities=20% Similarity=0.308 Sum_probs=157.1
Q ss_pred CeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh-------
Q 025238 68 RYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN------- 122 (255)
Q Consensus 68 ~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~------- 122 (255)
+|||||||||++ .|++.+.+++.||.++||++||+|+|| +||||+.++ ||+.+..
T Consensus 1 ~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~ 80 (226)
T TIGR00055 1 RHVAIIMDGNGRWAKKKGKPRAYGHKAGVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVK 80 (226)
T ss_pred CcEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHH
Confidence 699999999975 189999999999999999999999998 999999876 5544321
Q ss_pred ---cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccccC
Q 025238 123 ---AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT 182 (255)
Q Consensus 123 ---~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~ 182 (255)
.+ .+|.. ..+..|.++++++||+|.+||||+||++|+|++++++ ++|.+++++ ++
T Consensus 81 ~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~----i~ 155 (226)
T TIGR00055 81 ELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKV-KSGKLLPED----ID 155 (226)
T ss_pred HHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HhCCCChhh----CC
Confidence 11 12321 1234688999999999999999999999999998885 667777775 88
Q ss_pred HHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcC
Q 025238 183 EAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (255)
Q Consensus 183 e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfG 254 (255)
++.++++|+ +.+.|||||+|||||+.|||||||||++||||||++.+ |+|++.+|.+||.+|++|+||||
T Consensus 156 e~~~~~~L~--t~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~~l~~al~~y~~R~RRfG 226 (226)
T TIGR00055 156 EETLNKHLY--TANLPPVDLLIRTSGEMRISNFLLWQSSYAELYFTDILWPDFDPQDFELAILDFQFRHRRFG 226 (226)
T ss_pred HHHHHHhhc--cCCCCCCCEEEeCCCcccccCcHHHHHhceEEEECCCCCCcCCHHHHHHHHHHHhccCccCC
Confidence 999999998 46899999999999999999999999999999999985 99999999999999999999999
No 11
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.7e-49 Score=348.04 Aligned_cols=184 Identities=19% Similarity=0.260 Sum_probs=160.5
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh----
Q 025238 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~---- 122 (255)
++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +||||+.++ ||+.+..
T Consensus 9 ~~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~ 88 (242)
T PRK14838 9 RIPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEE 88 (242)
T ss_pred CCCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999985 289999999999999999999999998 999999876 5544332
Q ss_pred ----cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccc
Q 025238 123 ----AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (255)
Q Consensus 123 ----~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~ 181 (255)
.+ .+|.. ..+..|.++++++||+|.+|+||+||++|++++++++ +.|.+++++ +
T Consensus 89 ~~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~-~~g~~~~~~----i 163 (242)
T PRK14838 89 ETFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLV-QNGELNPEE----I 163 (242)
T ss_pred HHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHH-HhCCCChhh----C
Confidence 11 12321 1234688999999999999999999999999998876 667777776 7
Q ss_pred CHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 182 ~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
+++.+++.|+ +..+|||||||||||+.|||||||||++||||||++++ |+|++.||.+||.+|++++||||+
T Consensus 164 ~e~~~~~~L~--~~~~pd~DLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdf~~~d~~~ai~~y~~r~RrfG~ 236 (242)
T PRK14838 164 TEESISEHLT--TNFMPDPDLLIRTGGEIRLSNYLLWQCAYSELYFCDTFWPDFDEEELCKAIYDYQKRERRFGK 236 (242)
T ss_pred CHHHHHHHhc--cCCCCCCCEEEeCCCCccccCchHHHhcceeEEeCCCCCccCCHHHHHHHHHHHHhccccCCC
Confidence 8999999998 46889999999999999999999999999999999985 999999999999999999999996
No 12
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.3e-49 Score=344.32 Aligned_cols=181 Identities=17% Similarity=0.265 Sum_probs=156.0
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++.+.+++.||.++||++||+|+|| +||||+.++ ||+.+..
T Consensus 4 ~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~ 83 (230)
T PRK14837 4 NSLPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLS 83 (230)
T ss_pred CCCCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999975 189999999999999999999999998 999999885 5544321
Q ss_pred -------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|.. ..++.|+++++++||+|.+|+||+||++|+|++++ +.+++++
T Consensus 84 ~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~-----~~~~~~~-- 156 (230)
T PRK14837 84 SEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLS-----SGLDLET-- 156 (230)
T ss_pred HHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHh-----cCCChhh--
Confidence 11 12221 12346889999999999999999999999999963 3455654
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++.++++|+ +.+.|||||+|||||+.|||||||||++||||||++.+ |+|+..+|.+||.+|+++++|||+
T Consensus 157 --i~e~~~~~~L~--~~~~p~~DLlIRTsGE~RLSnFLLWQ~ayaElyF~d~lWPdF~~~dl~~ai~~y~~R~RrfG~ 230 (230)
T PRK14837 157 --LNENVFSKFLD--NPELPDLDLLIRTGGDMRISNFLLWRIAYCEFIFSNVLWPEYYVNHYSKDLECFKNRKRNFGR 230 (230)
T ss_pred --CCHHHHHHhhc--cCCCCCCCEEEECCCcccccccHHHhhhheEEEECCCCCccCCHHHHHHHHHHHhcccCcCCC
Confidence 88999999998 46899999999999999999999999999999999985 999999999999999999999996
No 13
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4.9e-49 Score=345.92 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=158.6
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh----
Q 025238 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~---- 122 (255)
++|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.+| ||+.+..
T Consensus 7 ~~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~ 86 (241)
T PRK14842 7 TIPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIET 86 (241)
T ss_pred CCCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999985 189999999999999999999999998 999999876 4543321
Q ss_pred ------cC-----------CCCch-h-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 025238 123 ------AT-----------LFEEA-G-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (255)
Q Consensus 123 ------~~-----------~~~~~-~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~ 179 (255)
.+ .+|+. . .+..|+++++++||+|.+||||+||++|++++++++ +.+.++++.
T Consensus 87 ~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~-~~~~~~~~~--- 162 (241)
T PRK14842 87 RLDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLAR-KAKKVTLEK--- 162 (241)
T ss_pred HHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCCccc---
Confidence 11 12321 1 234688999999999999999999999999998886 455555431
Q ss_pred ccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 180 ~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
+++++.++++|+ +.+.|||||+|||||+.|||||||||++||||||++++ |+|+..+|.+||.+|+++++|||+
T Consensus 163 ~i~e~~~~~~L~--t~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaEl~F~~~lWPdF~~~dl~~al~~y~~R~RrfG~ 237 (241)
T PRK14842 163 PLKEKEFEKFLY--TSPLPPVDLLIRTAGEQRLSNFLLWQSAYAELYFTDTLWPDFDKNSLVDSLKWYETRTRKFGG 237 (241)
T ss_pred cCCHHHHHHHhC--cCCCCCCCEEEECCCcccccCCHHHHHhceEEEECCCCCccCCHHHHHHHHHHHhccccccCC
Confidence 388999999998 46889999999999999999999999999999999985 999999999999999999999996
No 14
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=5e-49 Score=344.81 Aligned_cols=183 Identities=17% Similarity=0.280 Sum_probs=156.3
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
+++|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +||||+.+| ||+.+..
T Consensus 1 ~~~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~ 80 (233)
T PRK14841 1 MRIPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMID 80 (233)
T ss_pred CCCCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999985 189999999999999999999999998 999999876 4543321
Q ss_pred -------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccc
Q 025238 123 -------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (255)
Q Consensus 123 -------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~ 178 (255)
.+ .+|.. ..+..|.++++++||+|.+||||+||++|++++++++.++ .. +
T Consensus 81 ~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~-~~--~--- 154 (233)
T PRK14841 81 REMELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQG-KK--I--- 154 (233)
T ss_pred HHHHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcC-Cc--C---
Confidence 11 12321 1234688899999999999999999999999998886443 32 2
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
+++++.+++.|+ +.+.|||||||||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++++||||+
T Consensus 155 -~i~~~~~~~~L~--~~~~pdpDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~rrfG~ 229 (233)
T PRK14841 155 -ELTEETFRQYLY--LPDVPDPDLIIRTSGEMRLSNFLLWQSAYSELYFFKKLWPDFTKRDFLRAIESYSKRERRFGG 229 (233)
T ss_pred -CCCHHHHHHHhc--cCCCCCCCEEEeCCCCccccCcHHHHhhceeEEECCCCCCcCCHHHHHHHHHHHHhcCccCCC
Confidence 378899999998 46789999999999999999999999999999999986 999999999999999999999996
No 15
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=1.2e-48 Score=349.45 Aligned_cols=189 Identities=17% Similarity=0.328 Sum_probs=163.6
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
.++|+|||||||||++ .|++++.++++||.+.||++||+|+|| +||||+.++ ||+.+..
T Consensus 39 ~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~ 118 (275)
T PRK14835 39 GKLPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREAR 118 (275)
T ss_pred CCCCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHH
Confidence 4689999999999986 189999999999999999999999998 999999875 5543321
Q ss_pred ---------cCC-----------CCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccc
Q 025238 123 ---------ATL-----------FEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ 176 (255)
Q Consensus 123 ---------~~~-----------~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~ 176 (255)
.++ +|. . ..+..|+++++++||+|.+||||+||++|++++++++ +.|.+++++
T Consensus 119 ~~~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~~-~~g~~~~~~ 197 (275)
T PRK14835 119 RMAVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEA-AATGKSPEE 197 (275)
T ss_pred HHhchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChHH
Confidence 011 121 1 0234688999999999999999999999999998775 667888888
Q ss_pred cccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 177 EEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 177 ~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++.+++|+.++++|+ +...|||||||||||+.|||||||||++||||||++++ |+|++.||.+||.+||+++||||+
T Consensus 198 i~~~~~e~~i~~~L~--~~~~p~pDLLIRTsGE~RLSnFLLWQsayaElyF~d~lWPdF~~~d~~~ai~~yq~r~rRfG~ 275 (275)
T PRK14835 198 VAAELTPEHISAHLY--TAGVPDPDFIIRTSGEIRLSGFLLWQSAYSEYYFCDVYWPGFRKVDFLRALRDYQGRERRFGR 275 (275)
T ss_pred hcccCCHHHHHHHhc--cCCCCCCCEEEecCCCccccCCHHHhhhheEEEeCCCCCCcCCHHHHHHHHHHHHhhcccCCC
Confidence 766788999999998 46789999999999999999999999999999999986 999999999999999999999997
No 16
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=4e-48 Score=339.14 Aligned_cols=182 Identities=20% Similarity=0.254 Sum_probs=154.7
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh----
Q 025238 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~---- 122 (255)
++|+|||||||||++ .|++++.++++||.+.||++||+|+|| +||||+.+| ||+.+..
T Consensus 3 ~~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 82 (233)
T PRK14833 3 NTLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKD 82 (233)
T ss_pred CCCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHH
Confidence 689999999999985 289999999999999999999999998 999999886 4443321
Q ss_pred ------cC-----------CCCc-hh-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHH-HcCCCCccccc
Q 025238 123 ------AT-----------LFEE-AG-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYV-KLGGSGKIQEE 178 (255)
Q Consensus 123 ------~~-----------~~~~-~~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~-~~~~~~~~~~~ 178 (255)
.+ .+|. +. .++.|+++++++||+|.+|+||+||++|++++++++. +.+.
T Consensus 83 ~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~~~~~------- 155 (233)
T PRK14833 83 ERSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIGE------- 155 (233)
T ss_pred HHHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhcccCc-------
Confidence 01 1222 11 2346889999999999999999999999999987641 1111
Q ss_pred cccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 179 KIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 179 ~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
.+++++.+++.|+ +...|||||||||||+.|||||||||++||||||++.+ |+|++.+|.+||.+|++++||||+
T Consensus 156 ~~i~e~~l~~~L~--~~~~p~pDLlIRTsGE~RLSnFLlWQ~ayaElyF~~~lWPdf~~~dl~~al~~y~~r~rrfG~ 231 (233)
T PRK14833 156 LESLEEEISNCLD--TADLPEVDLLIRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGG 231 (233)
T ss_pred ccCCHHHHHHHhc--cCCCCCCCEEEECCCCccccccHHHHHhceeEEECCCCCCcCCHHHHHHHHHHHHhhhhhccC
Confidence 1488999999998 46889999999999999999999999999999999985 999999999999999999999997
No 17
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=100.00 E-value=4.5e-48 Score=340.60 Aligned_cols=184 Identities=21% Similarity=0.358 Sum_probs=160.3
Q ss_pred CCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh----
Q 025238 65 DKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN---- 122 (255)
Q Consensus 65 ~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~---- 122 (255)
.+|+|+|||||||++ .|++.+.+++.||.++||++||+|+|+ +||||+.++ ||+.+..
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999975 289999999999999999999999997 999999875 4433321
Q ss_pred ------cC-----------CCCc-h-----hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 025238 123 ------AT-----------LFEE-A-----GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (255)
Q Consensus 123 ------~~-----------~~~~-~-----~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~ 179 (255)
.+ .++. + ..+..|.++++++|+++.+||||++|++|+|++++++ +.|++++++
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v-~~g~l~~~~--- 170 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDV-AAGKLSPED--- 170 (245)
T ss_pred HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHH-HcCCCChHH---
Confidence 11 1121 1 1235688999999999999999999999999997775 677888886
Q ss_pred ccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 180 ~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++|+.++++|+. .+.|||||+|||||+.|+|||||||++|||+||++.+ |+|++.||.+||++||+|++|||+
T Consensus 171 -I~e~~i~~~L~~--~~~pdpDLlIRTsGe~RlSnFllWQ~aYsElyF~d~lWPdf~~~d~~~ai~~yq~R~rrfG~ 244 (245)
T COG0020 171 -IDEELISSHLYT--SGLPDPDLLIRTSGEQRLSNFLLWQSAYSELYFTDVLWPDFRREDLLRAIRDYQKRERRFGR 244 (245)
T ss_pred -cCHHHHHHhhcc--cCCCCCCEEEeCCCcccccccHHHHHHhCeEEeccccCCCCCHHHHHHHHHHHHhccccccC
Confidence 889999999984 7899999999999999999999999999999999985 999999999999999999999997
No 18
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=3.9e-47 Score=332.43 Aligned_cols=179 Identities=18% Similarity=0.280 Sum_probs=152.8
Q ss_pred hcCCCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh
Q 025238 61 ALDIDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN 122 (255)
Q Consensus 61 ~~~~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~ 122 (255)
.+|.+.|+|||||||||++ .|++++.+++.||.+.||++||+|+|| +||||+.+| ||+.+..
T Consensus 4 ~~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~ 83 (239)
T PRK14839 4 SLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA 83 (239)
T ss_pred ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHH
Confidence 3556789999999999985 189999999999999999999999998 999999886 5543321
Q ss_pred ----------cC-----------CCCch------hhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 025238 123 ----------AT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (255)
Q Consensus 123 ----------~~-----------~~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~ 175 (255)
.+ .+|.. ..+..|.++++++||+|.+|+||+||++|+++++ .++
T Consensus 84 ~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~---------~~~ 154 (239)
T PRK14839 84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL---------GPE 154 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc---------Ccc
Confidence 11 12221 1234688999999999999999999999999863 233
Q ss_pred ccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcC
Q 025238 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (255)
Q Consensus 176 ~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfG 254 (255)
+ ++++.+++.|+ ..+|||||+|||||+.|||||||||++||||||++.+ |+|++.+|.+||.+||++++|||
T Consensus 155 ~----i~e~~~~~~l~---~~~p~~DLlIRTsGE~RLSnFLlWQ~ayael~F~d~lWPdF~~~d~~~ai~~yq~R~RrfG 227 (239)
T PRK14839 155 G----LSREAFSDLLT---GDGGDVDLLIRTGGEKRLSDFLLWESAYAELHFTDRMWPDFGADDLAAAVADFHGRERRFG 227 (239)
T ss_pred c----CCHHHHHHHhc---cCCCCCCEEEeCCCccccccchhhhhhheEEEEccCCCccCCHHHHHHHHHHHhccccccC
Confidence 3 78899999886 4789999999999999999999999999999999985 99999999999999999999999
Q ss_pred C
Q 025238 255 K 255 (255)
Q Consensus 255 k 255 (255)
+
T Consensus 228 ~ 228 (239)
T PRK14839 228 G 228 (239)
T ss_pred C
Confidence 6
No 19
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=100.00 E-value=7.7e-47 Score=329.03 Aligned_cols=175 Identities=21% Similarity=0.359 Sum_probs=150.5
Q ss_pred CCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh------
Q 025238 67 LRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN------ 122 (255)
Q Consensus 67 P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~------ 122 (255)
|+|||||||||++ .|++++.+++.||.++||++||+|+|| +||||+.+| ||+.+..
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999985 189999999999999999999999998 999999876 4543321
Q ss_pred ----cC-----------CCCch-h-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcccccccc
Q 025238 123 ----AT-----------LFEEA-G-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (255)
Q Consensus 123 ----~~-----------~~~~~-~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~ 181 (255)
.+ .+|.. . .+..|.++++++||+|++||||+||++|++++++++ +.|.+++++ +
T Consensus 81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~-~~~~~~~~~----i 155 (221)
T cd00475 81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKV-KAGKLTPED----I 155 (221)
T ss_pred HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHH-HcCCCChHh----C
Confidence 11 12221 1 234688899999999999999999999999998775 667777765 7
Q ss_pred CHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhh
Q 025238 182 TEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTM 248 (255)
Q Consensus 182 ~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~ 248 (255)
+++.+++.|+ +.+.|||||+|||||+.|||||||||++||||||++++ |+|++.+|.+||.+|++
T Consensus 156 ~~~~~~~~L~--~~~~p~pDLlIRTsGe~RLSnFLlWQ~~yaEl~F~~~lWPdf~~~~~~~al~~y~~ 221 (221)
T cd00475 156 DESTLNKHLY--THDSPDPDLLIRTSGEQRLSNFLLWQSAYSELYFSDVLWPDFTFWDFLRALLDYQR 221 (221)
T ss_pred CHHHHHHhhC--cCCCCCCCEEEecCCccccccchHhhHhheeEEECCCCCCcCCHHHHHHHHHHHhC
Confidence 8999999998 46789999999999999999999999999999999986 99999999999999984
No 20
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=100.00 E-value=2.8e-45 Score=320.46 Aligned_cols=168 Identities=16% Similarity=0.221 Sum_probs=145.9
Q ss_pred ChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhhc----------C-----------CCCch-h----
Q 025238 81 HIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNNA----------T-----------LFEEA-G---- 130 (255)
Q Consensus 81 ~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~~----------~-----------~~~~~-~---- 130 (255)
|++++.+++.||.+.||++||+|+|| +||||+.++ ||+.+.+. + .+|.. .
T Consensus 22 G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~Lp~~l~~~i~ 101 (229)
T PRK10240 22 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIR 101 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCHHHHHHHH
Confidence 89999999999999999999999998 999999875 45443321 1 12221 1
Q ss_pred -hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 025238 131 -ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPV 209 (255)
Q Consensus 131 -~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~ 209 (255)
.+..|.++++++||+|++||||++|++|++++++++ +.|++++++ ++++.+++.|+ +..+|||||+|||||+
T Consensus 102 ~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v-~~g~~~~~~----i~e~~i~~~L~--t~~~pdpDLlIRTsGe 174 (229)
T PRK10240 102 KSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQV-QQGNLQPDQ----IDEEMLNQHIC--MHELAPVDLVIRTGGE 174 (229)
T ss_pred HHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHH-HcCCCChhh----CCHHHHHHHhc--cCCCCCCCEEEeCCCc
Confidence 234588999999999999999999999999998776 567777776 78999999997 4688999999999999
Q ss_pred ccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 210 RCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 210 ~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
.|||||||||++||||||++.+ |+|++.+|.+||.+|++++||||+
T Consensus 175 ~RLSnFLlWQ~ayaElyF~~~lWPdf~~~df~~al~~y~~r~rrfG~ 221 (229)
T PRK10240 175 HRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRERRFGG 221 (229)
T ss_pred ccccCChHHHHhheEEEECCCCCCcCCHHHHHHHHHHHHccCccCCC
Confidence 9999999999999999999986 999999999999999999999996
No 21
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=100.00 E-value=3.6e-45 Score=320.01 Aligned_cols=175 Identities=18% Similarity=0.336 Sum_probs=136.1
Q ss_pred EeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh------------
Q 025238 73 VIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN------------ 122 (255)
Q Consensus 73 I~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~------------ 122 (255)
|||||++ .|++.+.++++||.++||++||+|+|| +||+|+.++ ||+.+.+
T Consensus 1 ImDGNrRwA~~~g~~~~~Gh~~G~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~ 80 (223)
T PF01255_consen 1 IMDGNRRWAKKRGLPRSEGHRAGAEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFH 80 (223)
T ss_dssp EE--HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCcCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 7999975 189999999999999999999999998 999999876 4543321
Q ss_pred cCC-----------CCc-hh-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCccccccccCHHH
Q 025238 123 ATL-----------FEE-AG-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAH 185 (255)
Q Consensus 123 ~~~-----------~~~-~~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~ 185 (255)
++. +|. .. .++.|.++++++||+|++||||++|++|++++++++ ++|.+++++ ++++.
T Consensus 81 ~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~-~~~~~~~~~----i~~~~ 155 (223)
T PF01255_consen 81 KNGIRVRVIGDLSLLPEELQKAIAEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEV-QSGKLSPED----IDEEL 155 (223)
T ss_dssp HTTEEEEEES-GGGS-HHHHHHHHHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHH-HTTSSGGGG-----SHHH
T ss_pred hcCeeEEEEeccCcCCHHHHHHHHHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhh-ccCcccccc----CCHHH
Confidence 111 221 11 234578899999999999999999999999998876 667888876 88999
Q ss_pred HHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCC-CCCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 186 MSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGR-LKSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 186 i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~-~~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
++++|+. ...| |||+|||||+.|||||||||++||||||+++ ||+|++.+|.+||.+|++|+|||||
T Consensus 156 i~~~L~~--~~~P-pDLlIRtsGe~RLS~FllWq~~y~El~f~~~~WPdf~~~d~~~al~~y~~r~rrfGk 223 (223)
T PF01255_consen 156 ISSHLYT--PDLP-PDLLIRTSGEQRLSNFLLWQSAYAELYFTDTLWPDFSFWDFLRALLEYQRRERRFGK 223 (223)
T ss_dssp HHHTSTT--TTS---SEEEEETT--C-TTSSTTTTTT-EEEEESSSGGG--HHHHHHHHHHHHHCHHHTT-
T ss_pred HHhhccc--cCCC-CCEEEEeCCCcccCCCeEEeecCcEEEECCCCCccCCHHHHHHHHHHHHhhhccCCC
Confidence 9999984 4567 9999999999999999999999999999998 5999999999999999999999998
No 22
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=100.00 E-value=1.3e-42 Score=313.81 Aligned_cols=185 Identities=14% Similarity=0.209 Sum_probs=148.7
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhh----
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLN---- 121 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~---- 121 (255)
.++|+|||||||||++ .|++.+.++++||.++||++||+|+|| +||||+.++ ||+.+.
T Consensus 17 g~iP~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~ 96 (322)
T PTZ00349 17 FINIKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILI 96 (322)
T ss_pred CCCCCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHH
Confidence 4889999999999986 189999999999999999999999998 999999876 444321
Q ss_pred h---------cCC-----------CCch------hhhhhccCCCceEEEEEeCCCcHHHHH----------HHHHHHHHH
Q 025238 122 N---------ATL-----------FEEA------GESNLLLDHKHITLEFASFPDGKEAVA----------KAANLLFMK 165 (255)
Q Consensus 122 ~---------~~~-----------~~~~------~~~~~~~~~~~l~v~lls~~dGr~~Iv----------~a~r~l~~~ 165 (255)
+ .++ +|.. ..++.|+++++++||+|.+|+||+||+ +|+|+++++
T Consensus 97 ~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~~~A~~~~~~~ 176 (322)
T PTZ00349 97 NEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEE 176 (322)
T ss_pred HhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchHHHHHHHHHHH
Confidence 1 111 2221 123468999999999999999999999 799999876
Q ss_pred H------------HHcCCCCcc-c---------------------------------c-ccccCHHHHHHHHHhcCCCCC
Q 025238 166 Y------------VKLGGSGKI-Q---------------------------------E-EKIFTEAHMSEALRAVGCKGP 198 (255)
Q Consensus 166 ~------------~~~~~~~~~-~---------------------------------~-~~~~~e~~i~~~L~~~~~~~p 198 (255)
+ .+.|.+++. + + +..++++.++++|+ +.++|
T Consensus 177 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~~~~~~Ly--t~~~P 254 (322)
T PTZ00349 177 KKILCGSNILTDPIKEGTFAIPDDEDECDYLDHELENERIDLDLKFDGDCICGEKSFLNEEQIEIVNYHKKLL--TSDLP 254 (322)
T ss_pred hccccccccccccccccccccchhcccccccccccccccccccccccccccccccccCChhhccHHHHHHhcc--CCCCC
Confidence 3 233333211 0 1 11245556999998 57899
Q ss_pred CCcEEEEeCCCccccCCchhhh-hhceEEEcCCC-CCCCHHHHHHHHHHHhhhh
Q 025238 199 EPDLLLVYGPVRCHLGFPAWRI-RYTEIVHMGRL-KSMRYGSLLKAIYKFTMVR 250 (255)
Q Consensus 199 ePDLlIr~G~~~~LsGFppWqi-r~TEi~~~~~~-~~~~~~~f~~aL~~ys~~e 250 (255)
||||+|||||+.||||||+||+ .||||||++.+ |+|+..+|.+||.+||..+
T Consensus 255 dpDLlIRTSGE~RLSNFLLWQ~aaysElyF~d~lWPdF~~~d~~~ai~~yq~~~ 308 (322)
T PTZ00349 255 PPNILIRTSGEKRLSDFMLYQISEFTEIYFINEYWPIFNFLQFIYIILHYTIFQ 308 (322)
T ss_pred CCCEEEECCCcccccccHHhhcccceEEEECCCCCCCCCHHHHHHHHHHHhhhh
Confidence 9999999999999999999999 69999999985 9999999999999999854
No 23
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=283.05 Aligned_cols=184 Identities=18% Similarity=0.229 Sum_probs=156.6
Q ss_pred CCCCCeEEEEeeCCCC--------------CChHHHHHHHHHHHHcCCCEEEEEecc-cCccccHHH---HHHHhhh---
Q 025238 64 IDKLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKES---ILGKLNN--- 122 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~--------------~~~~~l~~l~~Wc~~~GI~~lSlYd~~-g~lkr~~~~---l~~~l~~--- 122 (255)
-++|+|||+|||||++ .|..++.++++||.++||++||+|+|+ +||||+.++ ||+.+.+
T Consensus 34 g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~ 113 (271)
T KOG1602|consen 34 GPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIE 113 (271)
T ss_pred CCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHH
Confidence 5889999999999986 189999999999999999999999998 999999876 5543321
Q ss_pred ----------cCC-----------CCc-hh-----hhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHHHHHcCCCCcc
Q 025238 123 ----------ATL-----------FEE-AG-----ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (255)
Q Consensus 123 ----------~~~-----------~~~-~~-----~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~ 175 (255)
.++ +++ .. .++.|+++++.+|++|.+|.||.||++|+|.++..+ +.|.+++
T Consensus 114 ~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~-~~g~~~~- 191 (271)
T KOG1602|consen 114 RLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRV-KDGDIDV- 191 (271)
T ss_pred HHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhh-hcCCCcc-
Confidence 111 222 11 124689999999999999999999999999997764 5666655
Q ss_pred ccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEEcCCC-CCCCHHHHHHHHHHHhhhhhhcC
Q 025238 176 QEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKFTMVRQNYG 254 (255)
Q Consensus 176 ~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~~~~~-~~~~~~~f~~aL~~ys~~eqRfG 254 (255)
++.+.++++.|+. ...|.|||+|||||+.|||||+.||..+||++|.+.+ |+|++..|..||-+||..++++|
T Consensus 192 ----~i~~~~~e~~l~~--~~~p~pDLlIRTSGe~RLSnFllWQ~s~t~l~f~~~LWPefg~~~l~~aiLkfq~~~~~l~ 265 (271)
T KOG1602|consen 192 ----DINLSDIEECLYT--SDVPHPDLLIRTSGEDRLSNFLLWQTSETELFFADALWPEFGLWHLFWAILKFQRNQSYLG 265 (271)
T ss_pred ----chhhHHHHHhhcc--CCCCCCCEEEEcCCcchHHHHHHHHhcccEEeeccccCccccHHHHHHHHHHHHHHHHHHh
Confidence 2667788888884 5679999999999999999999999999999999985 99999999999999999999987
Q ss_pred C
Q 025238 255 K 255 (255)
Q Consensus 255 k 255 (255)
+
T Consensus 266 ~ 266 (271)
T KOG1602|consen 266 K 266 (271)
T ss_pred h
Confidence 5
No 24
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=100.00 E-value=1.2e-34 Score=253.07 Aligned_cols=235 Identities=21% Similarity=0.315 Sum_probs=174.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hHhh-hhcCCCCCCeEEEEeeCCCC--CC
Q 025238 13 WACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGI--------LKRY-KALDIDKLRYLAIVIESEEA--YH 81 (255)
Q Consensus 13 ~~~~~~~~~~~~l~~~~h~~~s~~~~~~~~~~~~~~~~~s~~l--------~~~~-~~~~~~~P~HLavI~d~~~~--~~ 81 (255)
+.+|.......++.......+.+|-+..-.++.. +..+.+.. ++.. +.+ .+.|+|+++|+...+. +.
T Consensus 4 r~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~-~~l~~s~~~~~a~~r~~r~d~~~L-~k~p~hl~lvI~~v~~~~~~ 81 (263)
T KOG2818|consen 4 RCCMLRSRASLLLLVKFQRCLGAFRRLWLFLIRT-KNLELSKAALHAAQRLFRTDFSSL-KKGPKHLALVIHPVEDGEGS 81 (263)
T ss_pred HHHHHHhhHHHHHHHHHHhhHhHHHHHHHHHHHh-hhHHHHHHHHHHHHHHhhcchhhh-hhcchhheEEEEecccCCce
Confidence 3455555555555555555555555554333333 22333311 2222 233 5889999988887776 37
Q ss_pred hHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhhhc----CCC--Cc-------hhhhhhccCCCceEEEEEeC
Q 025238 82 IPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNA----TLF--EE-------AGESNLLLDHKHITLEFASF 148 (255)
Q Consensus 82 ~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~~~----~~~--~~-------~~~~~~~~~~~~l~v~lls~ 148 (255)
+..+.+++.||...||+++++||..|.+||+.+.++.++... .+. +. .|.+....++.++.+..+|.
T Consensus 82 ~~da~~~v~w~v~~gik~~~lyd~~g~~~r~~~~~~~~I~s~la~~~g~~~~~~~~~~~~snD~~nQ~~~~~L~~~~~s~ 161 (263)
T KOG2818|consen 82 FSDASSIVFWAVTVGIKYLSLYDRVGIKKRNMPVVRDEIISHLANYFGLDEPTLAVTIKLSNDEPNQEDKCKLGTHAISL 161 (263)
T ss_pred ehhhHHHHHHHHHhccceeeHHHHHHHhccCcHHHHHHHHHhhhhhcCCCCCcccccCCCCCCCcccccccchhheeccc
Confidence 899999999999999999999999999999999887766533 221 11 12222335667899999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHcC-CCCccccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCCccccCCchhhhhhceEEE
Q 025238 149 PDGKEAVAKAANLLFMKYVKLG-GSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVH 227 (255)
Q Consensus 149 ~dGr~~Iv~a~r~l~~~~~~~~-~~~~~~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~~~LsGFppWqir~TEi~~ 227 (255)
.|||..|+|.++.+...+.... ..++. ++|.+.++..|.. .+.|||||+|+|||...++||||||+|+|||++
T Consensus 162 ~DGr~~i~Dl~r~i~~~~~~~~~~~~~~----~itve~vds~l~e--~~~PePdLll~fg~~~~l~GfpPWhiRltEf~~ 235 (263)
T KOG2818|consen 162 EDGRMIIIDLTRLIQELCYLYELYRSET----DITVETVDSELKE--FVEPEPDLLLFFGPVLVLQGFPPWHIRLTEFTR 235 (263)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCc----cccHHHHHHHHHh--cCCCCcceeeeeccchhhcCCCCceeEEEEeEe
Confidence 9999999999999854432221 12333 3677888887774 578999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHhhhhhhcCC
Q 025238 228 MGRLKSMRYGSLLKAIYKFTMVRQNYGK 255 (255)
Q Consensus 228 ~~~~~~~~~~~f~~aL~~ys~~eqRfGk 255 (255)
.|++-.++|++|.++|++||.|+||.||
T Consensus 236 ~p~~~~~~~e~f~~~lr~ya~ce~RvGk 263 (263)
T KOG2818|consen 236 KPSHLCTSYETFFRALRKYADCEQRVGK 263 (263)
T ss_pred ccccCcccHHHHHHHHHHHhhhhhhcCC
Confidence 9999999999999999999999999997
No 25
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=68.26 E-value=9 Score=30.45 Aligned_cols=32 Identities=9% Similarity=0.013 Sum_probs=26.0
Q ss_pred EeCCCcHHHHHHHHHHHHHHHHHcCCCCcccc
Q 025238 146 ASFPDGKEAVAKAANLLFMKYVKLGGSGKIQE 177 (255)
Q Consensus 146 ls~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~ 177 (255)
....|.+++|.++++.|+.++.+.++++++|+
T Consensus 9 tv~~n~~e~I~~at~eLl~~i~~~N~l~~~dI 40 (118)
T PF07736_consen 9 TVEENTPEEILEATRELLEEILERNELSPEDI 40 (118)
T ss_dssp E-SSSSHHHHHHHHHHHHHHHHHHTT--GGGE
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHcCCCHHHE
Confidence 34679999999999999999999889999885
No 26
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=58.28 E-value=12 Score=28.29 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=30.0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcCCCCCCCcE
Q 025238 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (255)
Q Consensus 148 ~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~~~~pePDL 202 (255)
..++..++.+-+|+|..... +|+ ++.+++...|+......|-|.|
T Consensus 17 ~~~~qpe~~~~Vr~LV~~L~-~~~---------i~~EeF~~~Lq~~lns~~qP~l 61 (92)
T smart00549 17 NDISQPEVAERVRTLVLGLV-NGT---------ITAEEFTSRLQEALNSPLQPYL 61 (92)
T ss_pred cCCCcchHHHHHHHHHHHHH-hCC---------CCHHHHHHHHHHHHcCCCCchh
Confidence 34455899999999988864 344 5566677777654445566665
No 27
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=56.32 E-value=13 Score=29.40 Aligned_cols=74 Identities=16% Similarity=0.066 Sum_probs=45.4
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCcccc-ccccCH-HHHH-----HHHHhcCCCCCCCcEEEEeCCCccccCCchhh
Q 025238 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE-EKIFTE-AHMS-----EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWR 219 (255)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~-~~~~~e-~~i~-----~~L~~~~~~~pePDLlIr~G~~~~LsGFppWq 219 (255)
...|-+++|.++++.|..++.+.+.++++|+ +..||. .+++ ...+.. .+.. +.-+.+.-+....|=||==
T Consensus 10 v~~nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~-~Gw~--~Vplmc~qEm~V~gsL~rc 86 (117)
T TIGR01796 10 VERNEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGL-PGWT--DVPVMCAQEIPVEGSLPRC 86 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhc-cCCC--CcceeccCcCCCCCCCCce
Confidence 4578999999999999999988888988874 222221 1122 222221 1222 2223455566677777777
Q ss_pred hhhc
Q 025238 220 IRYT 223 (255)
Q Consensus 220 ir~T 223 (255)
||.-
T Consensus 87 IRvl 90 (117)
T TIGR01796 87 IRVL 90 (117)
T ss_pred eEEE
Confidence 7753
No 28
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=55.69 E-value=14 Score=29.32 Aligned_cols=74 Identities=18% Similarity=0.097 Sum_probs=46.5
Q ss_pred eCCCcHHHHHHHHHHHHHHHHHcCCCCcccc-ccccCH-HHHH-----HHHHhcCCCCCCCcEEEEeCCCccccCCchhh
Q 025238 147 SFPDGKEAVAKAANLLFMKYVKLGGSGKIQE-EKIFTE-AHMS-----EALRAVGCKGPEPDLLLVYGPVRCHLGFPAWR 219 (255)
Q Consensus 147 s~~dGr~~Iv~a~r~l~~~~~~~~~~~~~~~-~~~~~e-~~i~-----~~L~~~~~~~pePDLlIr~G~~~~LsGFppWq 219 (255)
...|-+++|.++++.|..++.+.+.++++|+ +..||. .+++ ...+..+ +. =+.-+.+.-+....|=||==
T Consensus 10 v~~nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~-~~--~~Vplmc~qE~~V~gsL~rc 86 (117)
T cd02185 10 VEENTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTPDLDAAFPAKAARELG-GW--KYVPLMCAQEMDVPGSLPRC 86 (117)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCcccccChHHHHHhcC-CC--CCcceeecCcCCCCCCCCce
Confidence 3578999999999999999988888988874 222221 1122 2222211 11 13445566667777777777
Q ss_pred hhhc
Q 025238 220 IRYT 223 (255)
Q Consensus 220 ir~T 223 (255)
||.-
T Consensus 87 IRvl 90 (117)
T cd02185 87 IRVL 90 (117)
T ss_pred eEEE
Confidence 7754
No 29
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=48.96 E-value=20 Score=28.02 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=32.9
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
..+++||+|..|++..+..-+......|.++||.+-.+ .+..+- ..+++.+.+.
T Consensus 27 ~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~-~l~~~~--~~~el~~~i~ 80 (117)
T PF00763_consen 27 GITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELI-ELPEDI--SEEELLELIE 80 (117)
T ss_dssp T---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEE-EE-TTS--SHHHHHHHHH
T ss_pred CCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEE-ECCCCc--CHHHHHHHHH
Confidence 56779999999988666777889999999999987544 332222 2344555444
No 30
>PF13043 DUF3903: Domain of unknown function (DUF3903)
Probab=46.46 E-value=8.6 Score=24.13 Aligned_cols=9 Identities=22% Similarity=0.667 Sum_probs=7.7
Q ss_pred hhhhhhcCC
Q 025238 247 TMVRQNYGK 255 (255)
Q Consensus 247 s~~eqRfGk 255 (255)
+.|++||||
T Consensus 15 ~eckrrfgk 23 (40)
T PF13043_consen 15 AECKRRFGK 23 (40)
T ss_pred HHHHHHhch
Confidence 569999997
No 31
>PHA02679 ORF091 IMV membrane protein; Provisional
Probab=43.40 E-value=19 Score=24.35 Aligned_cols=16 Identities=25% Similarity=0.663 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025238 20 LGLWIIWLLIHFAVDL 35 (255)
Q Consensus 20 ~~~~~l~~~~h~~~s~ 35 (255)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA02679 37 QSVVFSWFLFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3456889999998886
No 32
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=42.59 E-value=86 Score=24.34 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=21.0
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHcCCCEEEE
Q 025238 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 72 vI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
|++.+.+.-.++.+.+++.-|.++|++.+++
T Consensus 88 v~I~aD~~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 88 IFFRADKTVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3343333336778888888888888887776
No 33
>PHA03047 IMV membrane receptor-like protein; Provisional
Probab=42.53 E-value=20 Score=24.30 Aligned_cols=16 Identities=19% Similarity=0.787 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 025238 20 LGLWIIWLLIHFAVDL 35 (255)
Q Consensus 20 ~~~~~l~~~~h~~~s~ 35 (255)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA03047 37 QSILFMWFIFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4456889999998886
No 34
>PRK04239 hypothetical protein; Provisional
Probab=39.76 E-value=78 Score=24.84 Aligned_cols=45 Identities=13% Similarity=0.128 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcCCCCCCC
Q 025238 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEP 200 (255)
Q Consensus 151 Gr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~~~~peP 200 (255)
-|++.++++....-.++++|.+.. .++|+.+-+.|..+.....||
T Consensus 61 vkPe~A~~VE~~liqlAq~G~i~~-----ki~e~~L~~lL~~v~~~kre~ 105 (110)
T PRK04239 61 VKPEFAEQVEQQLIQLAQSGRIQG-----PIDDEQLKEILEQLTPQKREF 105 (110)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCC-----CcCHHHHHHHHHHHhhcccCc
Confidence 378899999888778889998754 489999999888654444444
No 35
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=39.60 E-value=67 Score=25.01 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE
Q 025238 81 HIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 81 ~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
.++.+.+++..|..+|+..+++
T Consensus 96 ~~~~vv~v~d~~~~~G~~~v~l 117 (121)
T TIGR02804 96 KFQDFVTITDMLKAKEHENVQI 117 (121)
T ss_pred CHhHHHHHHHHHHHcCCCeEEE
Confidence 6778888888888888888776
No 36
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=37.54 E-value=3e+02 Score=24.59 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=64.5
Q ss_pred CCCCChHHHHHHHHHHHHc-CCCEEEEEecccCcccc-HHH---HHHHhhhcCCCCchhhhhhccCCCceEEEEEeCCCc
Q 025238 77 EEAYHIPAVIQLLQWLVDI-GVKHVCLYDAEGILKKS-KES---ILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDG 151 (255)
Q Consensus 77 ~~~~~~~~l~~l~~Wc~~~-GI~~lSlYd~~g~lkr~-~~~---l~~~l~~~~~~~~~~~~~~~~~~~~l~v~lls~~dG 151 (255)
++..+.+.+.++++|+.+. |+.-+.+--.+|-.-.- .++ +.+...+. ..+++.|-.-.+..+
T Consensus 15 dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~-------------~~~~~~viagv~~~~ 81 (288)
T cd00954 15 NGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEA-------------AKGKVTLIAHVGSLN 81 (288)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHH-------------hCCCCeEEeccCCCC
Confidence 3335789999999999999 99999999888654322 222 33322211 112344444344455
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CCccccccccCHHHHHHHHHhcCCCCCCCcEEEEeCCC
Q 025238 152 KEAVAKAANLLFMKYVKLGG--SGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGPV 209 (255)
Q Consensus 152 r~~Iv~a~r~l~~~~~~~~~--~~~~~~~~~~~e~~i~~~L~~~~~~~pePDLlIr~G~~ 209 (255)
-++.++.++.. ++.--.+- +.|- -...+++++-++...+....|+..++|.--|.
T Consensus 82 ~~~ai~~a~~a-~~~Gad~v~~~~P~--y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~ 138 (288)
T cd00954 82 LKESQELAKHA-EELGYDAISAITPF--YYKFSFEEIKDYYREIIAAAASLPMIIYHIPA 138 (288)
T ss_pred HHHHHHHHHHH-HHcCCCEEEEeCCC--CCCCCHHHHHHHHHHHHHhcCCCCEEEEeCcc
Confidence 66667766664 33211111 1221 12246677776665543344456677765553
No 37
>PF06269 DUF1029: Protein of unknown function (DUF1029); InterPro: IPR009372 This entry is represented by Vaccinia virus, A14.5L; it is a family of uncharacterised viral proteins.
Probab=37.29 E-value=24 Score=23.94 Aligned_cols=16 Identities=19% Similarity=0.748 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 025238 20 LGLWIIWLLIHFAVDL 35 (255)
Q Consensus 20 ~~~~~l~~~~h~~~s~ 35 (255)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PF06269_consen 37 QSIVFMWFIFHFVHSV 52 (53)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4456889999998875
No 38
>PHA02724 hydrophobic IMV membrane protein; Provisional
Probab=37.12 E-value=30 Score=23.47 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 025238 20 LGLWIIWLLIHFAVDL 35 (255)
Q Consensus 20 ~~~~~l~~~~h~~~s~ 35 (255)
+.-.+.|.+.|++.|+
T Consensus 37 qsi~FmWFifHFvhSv 52 (53)
T PHA02724 37 QTIVFIWFIFHFVHSA 52 (53)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4456889999998875
No 39
>COG4792 EscU Type III secretory pathway, component EscU [Intracellular trafficking and secretion]
Probab=34.53 E-value=3.9e+02 Score=24.95 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=26.3
Q ss_pred CCCCeEEEEeeCCCC----------CChHHHHHHHHHHHHcCCCEE
Q 025238 65 DKLRYLAIVIESEEA----------YHIPAVIQLLQWLVDIGVKHV 100 (255)
Q Consensus 65 ~~P~HLavI~d~~~~----------~~~~~l~~l~~Wc~~~GI~~l 100 (255)
+-|.|+||-+--.+. +.=+++..++..+.+.|||.|
T Consensus 262 ~nPThiaI~l~Y~~gETplPlVi~k~~daqA~~i~~iAe~~~ipVv 307 (349)
T COG4792 262 KNPTHIAICLRYKRGETPLPLVIEKGTDAQALQIVKIAEEEGIPVV 307 (349)
T ss_pred ecCceEEEEEeeccCCCCCCEEEEecCcHHHHHHHHHHHHhCCCee
Confidence 569999988753322 234667888888889999987
No 40
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.58 E-value=2.3e+02 Score=25.90 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=38.0
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+......|.+.||..- ++.+.++.. .+++.+.+.
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~~--~~~l~~~I~ 83 (284)
T PRK14179 31 IVPGLVVILVGDNPASQVYVRNKERSALAAGFKSE-VVRLPETIS--QEELLDLIE 83 (284)
T ss_pred CCceEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCC--HHHHHHHHH
Confidence 34599999999987666777888999999999875 666665432 344444443
No 41
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=32.48 E-value=1.2e+02 Score=27.24 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=49.8
Q ss_pred ccCHHHHHHHHHhcCCCCCCCcEEEEeCC-CccccCCchhhhhhceEEEcCCCCCCCHHHHHHHHHHHhhhhhhc
Q 025238 180 IFTEAHMSEALRAVGCKGPEPDLLLVYGP-VRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIYKFTMVRQNY 253 (255)
Q Consensus 180 ~~~e~~i~~~L~~~~~~~pePDLlIr~G~-~~~LsGFppWqir~TEi~~~~~~~~~~~~~f~~aL~~ys~~eqRf 253 (255)
++.++.+.+.-+- ....+-|+|.||. ...-||-|-+++.---+|.-..+..+.-+||.+. ++|.|||
T Consensus 29 pl~e~~ikkl~~l---i~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~hqdf~rS----s~~RqRY 96 (305)
T KOG2683|consen 29 PLCEEDIKKLYRL---IGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQHQDFVRS----SRCRQRY 96 (305)
T ss_pred CCCHHHHHHHHHH---HccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchHHHHhhh----hHHHHHH
Confidence 4778888765443 4567889999984 4556899999998777887777777888999875 4555554
No 42
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.61 E-value=2.6e+02 Score=25.52 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=37.5
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
..+++||+|+-|++..+..-+..-...|.+.||..- ++.+.++. ..+++.+.+.
T Consensus 24 g~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 77 (279)
T PRK14178 24 GLYPRLATVIVGDDPASQMYVRMKHRACERVGIGSV-GIELPGDA--TTRTVLERIR 77 (279)
T ss_pred CCCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 445599999999987677778888999999999865 44554432 2334444443
No 43
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.86 E-value=2.6e+02 Score=22.16 Aligned_cols=36 Identities=28% Similarity=0.340 Sum_probs=29.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025238 5 DTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFAL 40 (255)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~l~~~~h~~~s~~~~~~ 40 (255)
|..--+..|+.|+..++++++|-++-+.=.+++.+.
T Consensus 39 dellDViyW~rQVi~l~lGviwGi~pL~G~l~iv~f 74 (129)
T KOG3415|consen 39 DELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIVLF 74 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHHHH
Confidence 455558899999999999999999888777766554
No 44
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.64 E-value=2.2e+02 Score=26.18 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=37.9
Q ss_pred CCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 67 P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.++|++|+-|++..+..-+......|.+.||+. .+|.+.++. ..+++.+.+.
T Consensus 33 ~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~--t~~el~~~I~ 84 (297)
T PRK14168 33 VPGLVTILVGESPASLSYVTLKIKTAHRLGFHE-IQDNQSVDI--TEEELLALID 84 (297)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHH
Confidence 449999999988656677788899999999996 566665444 3445555554
No 45
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=29.32 E-value=2.1e+02 Score=27.17 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=38.4
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+......|.+.||.. ..|.+.+.. ..+++.+.+.
T Consensus 102 ~~P~LaiIlvG~dpaS~~Yv~~k~K~~e~~GI~~-~~~~lpe~~--te~ell~~I~ 154 (364)
T PLN02616 102 VVPGLAVILVGDRKDSATYVRNKKKACDSVGINS-FEVRLPEDS--TEQEVLKFIS 154 (364)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHH
Confidence 4559999999998767777888899999999997 455554333 2345555554
No 46
>COG5127 Vacuolar H+-ATPase V1 sector, subunit C [Energy production and conversion]
Probab=28.71 E-value=4.9e+02 Score=24.33 Aligned_cols=68 Identities=18% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhhHhhhhcCCCCCCeEEEEeeCCCCCChHHH-HHHHHHHHHcCCCEEEEEecccCccccHHHHHH
Q 025238 45 AIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAV-IQLLQWLVDIGVKHVCLYDAEGILKKSKESILG 118 (255)
Q Consensus 45 ~~~~~~~s~~l~~~~~~~~~~~P~HLavI~d~~~~~~~~~l-~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~ 118 (255)
.+-+.+.+-+++-|| .+|+|-.+.+...+.+...++ ++++.-...+| ..--+|+..|+-...-+.|.+
T Consensus 295 HiK~LrvyVESvlRY-----GLPp~f~~~I~~~~~KsesKvk~~li~~~~~l~-~n~i~~~k~g~~n~~~~~l~~ 363 (383)
T COG5127 295 HIKLLRVYVESVLRY-----GLPPEFMFFITRGEKKSESKVKAQLIAIAKNLP-SNRIVYEKEGDNNDEGEILFA 363 (383)
T ss_pred HHHHHHHHHHHHHHh-----CCCcceeEEEeccCccchHHHHHHHHHHHhhcC-CCcchhccccCCcccchHHHH
Confidence 333556666666677 889998777765555554444 33444443333 233467777766544444443
No 47
>COG2118 DNA-binding protein [General function prediction only]
Probab=28.47 E-value=1.3e+02 Score=23.73 Aligned_cols=38 Identities=16% Similarity=0.249 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhc
Q 025238 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAV 193 (255)
Q Consensus 151 Gr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~ 193 (255)
-|+++++++...+-.+++.|.++. .++|+++-+.|..+
T Consensus 64 vRPe~AeavE~qLi~LaqtGri~~-----~I~e~~lk~IL~~i 101 (116)
T COG2118 64 VRPELAEAVENQLIQLAQTGRITH-----KIDEEELKEILERI 101 (116)
T ss_pred cCHHHHHHHHHHHHHHHHcCCCCC-----CCCHHHHHHHHHHH
Confidence 388999999887778889998754 48999999888753
No 48
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.44 E-value=2.9e+02 Score=25.41 Aligned_cols=53 Identities=11% Similarity=0.085 Sum_probs=36.7
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+......|.+.||..- ++.+.++. ..+++.+.+.
T Consensus 32 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~--t~~~l~~~I~ 84 (301)
T PRK14194 32 IEPALAVILVGNDPASQVYVRNKILRAEEAGIRSL-EHRLPADT--SQARLLALIA 84 (301)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 34599999999887566777888999999999864 44444332 2344544443
No 49
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.27 E-value=2.5e+02 Score=25.78 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=38.3
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|.-|++..+..-+..-...|.+.||+. .+|.+.++- ..+++.+.+.
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~--~~~el~~~I~ 82 (295)
T PRK14174 30 KVPGLTVIIVGEDPASQVYVRNKAKSCKEIGMNS-TVIELPADT--TEEHLLKKIE 82 (295)
T ss_pred CCCeEEEEEeCCChHHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHH
Confidence 4559999999988767777888999999999986 455665443 2445555544
No 50
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.44 E-value=1.4e+02 Score=23.93 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=21.5
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHcCCCEEEE
Q 025238 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 72 vI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
|++.+.+.-.+..+.+++.-|.++|+..+++
T Consensus 106 V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l 136 (141)
T PRK11024 106 FLIGGAKDVPYDEIIKALNLLHSAGVKSVGL 136 (141)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3443333336788888888888888888876
No 51
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=27.29 E-value=1.3e+02 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=22.1
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHcCCCEEEE
Q 025238 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 72 vI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
|++...+.-.+..+.+++.-|.++|+..+++
T Consensus 96 v~i~aD~~~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 96 VLIRADKTVPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3344333346888888888888888888876
No 52
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.08 E-value=1.4e+02 Score=22.58 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=31.5
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecc
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~ 106 (255)
.+..+.|++...+ .-.++.+.+++|.+.|++.+++=+..
T Consensus 46 ~~~d~vi~iS~sG--~t~~~~~~~~~a~~~g~~vi~iT~~~ 84 (128)
T cd05014 46 TPGDVVIAISNSG--ETDELLNLLPHLKRRGAPIIAITGNP 84 (128)
T ss_pred CCCCEEEEEeCCC--CCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4668888886543 56889999999999999999987654
No 53
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=26.30 E-value=4.3e+02 Score=23.69 Aligned_cols=74 Identities=20% Similarity=0.232 Sum_probs=46.8
Q ss_pred CCCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhhhcCCCCchhhhhhccCCCceEE
Q 025238 64 IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITL 143 (255)
Q Consensus 64 ~~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~v 143 (255)
.+.|+ +.||+|.... ...+.-|..+|||.+++-|-..++ +.+.+
T Consensus 116 f~~P~-llIV~Dp~~d------~qAI~EA~~lnIPvIal~DTds~p-----------------------------~~VDy 159 (249)
T PTZ00254 116 FMEPR-LLIVTDPRTD------HQAIREASYVNIPVIALCDTDSPL-----------------------------EYVDI 159 (249)
T ss_pred cCCCC-EEEEeCCCcc------hHHHHHHHHhCCCEEEEecCCCCc-----------------------------ccCce
Confidence 35665 7788887653 234555899999999999765332 23444
Q ss_pred EEEeCCCcHHHHHHHHHHHHHHHHH-cCCCC
Q 025238 144 EFASFPDGKEAVAKAANLLFMKYVK-LGGSG 173 (255)
Q Consensus 144 ~lls~~dGr~~Iv~a~r~l~~~~~~-~~~~~ 173 (255)
-+=.+.||+.+|.=....|+.++.. +|.++
T Consensus 160 ~IP~Ndds~~SI~li~~lLar~Vl~~rG~~~ 190 (249)
T PTZ00254 160 AIPCNNRGKESIALMYWLLAREVLRLRGTLP 190 (249)
T ss_pred eeCCCCchHHHHHHHHHHHHHHHHHhhCccc
Confidence 4445567777777666666665433 34443
No 54
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.15 E-value=2.7e+02 Score=25.55 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=37.8
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+......|.+.||.. .+|.+.++.. .+++.+.+.
T Consensus 31 ~~p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~--~~el~~~i~ 83 (296)
T PRK14188 31 VTPGLAVVLVGEDPASQVYVRSKGKQTKEAGMAS-FEHKLPADTS--QAELLALIA 83 (296)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCC--HHHHHHHHH
Confidence 4559999999998766677888999999999985 3666654432 344444443
No 55
>PLN03044 GTP cyclohydrolase I; Provisional
Probab=25.99 E-value=78 Score=27.15 Aligned_cols=28 Identities=0% Similarity=-0.021 Sum_probs=22.4
Q ss_pred CeEEEEeeCCCCCChHHHHHHHHHHHHc
Q 025238 68 RYLAIVIESEEAYHIPAVIQLLQWLVDI 95 (255)
Q Consensus 68 ~HLavI~d~~~~~~~~~l~~l~~Wc~~~ 95 (255)
-|||.|.+++.-.|+.++.++++|++..
T Consensus 87 ~hIaYiP~~~~ViGLSKl~RiV~~~arR 114 (188)
T PLN03044 87 IHVGYIPNAGVILGLSKLARIAEVYARR 114 (188)
T ss_pred EEEEEECCCCccccHHHHHHHHHHHhcC
Confidence 4999999734445999999999998754
No 56
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=25.20 E-value=2.1e+02 Score=22.19 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcC
Q 025238 152 KEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVG 194 (255)
Q Consensus 152 r~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~ 194 (255)
|++.+.++...+-.++++|.+.. .++|+.+-+.|..+.
T Consensus 57 kPe~A~~VE~~Liqlaq~G~l~~-----kI~d~~L~~iL~~i~ 94 (107)
T PF01984_consen 57 KPEKARQVENQLIQLAQSGQLRG-----KIDDEQLKEILEQIS 94 (107)
T ss_dssp HHHHHHHHHHHHHHHHHCTSSSS------B-HHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHcCCCCC-----CcCHHHHHHHHHHHh
Confidence 67888888888788889999864 389999999887643
No 57
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.72 E-value=3.4e+02 Score=24.82 Aligned_cols=51 Identities=14% Similarity=0.167 Sum_probs=35.6
Q ss_pred CeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 68 RYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 68 ~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
++||+|+-|++..+.--+......|.+.||.+- +|.+.++. ..+++.+.+.
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--s~~el~~~I~ 84 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMGSE-MIRLKEQT--TTEELLGVID 84 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 499999999886566777888999999999764 44444332 2445555444
No 58
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.50 E-value=3.5e+02 Score=24.79 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=37.8
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
..+++||+|+-|++..+..-+..-...|.+.||..- ++.+.++. ..+++.+.+.
T Consensus 24 ~~~P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--t~~el~~~I~ 77 (287)
T PRK14181 24 STAPGLAVVLIGNDPASEVYVGMKVKKATDLGMVSK-AHRLPSDA--TLSDILKLIH 77 (287)
T ss_pred CCCCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 345599999999887667778888999999999875 45554433 2444554443
No 59
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.38 E-value=3.7e+02 Score=24.58 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.++.||+|+-|++..+..-+......|.+.||..- +|.+.++- ..+++.+.+.
T Consensus 30 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 82 (285)
T PRK14191 30 KRPKLAVILVGKDPASQTYVNMKIKACERVGMDSD-LHTLQENT--TEAELLSLIK 82 (285)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 44589999999887677778889999999999875 44554332 2344444443
No 60
>PRK09482 flap endonuclease-like protein; Provisional
Probab=23.65 E-value=3.1e+02 Score=24.60 Aligned_cols=37 Identities=5% Similarity=0.048 Sum_probs=25.1
Q ss_pred CCCeEEEEeeCCCC---------------------CChHHHHHHHHHHHHcCCCEEEE
Q 025238 66 KLRYLAIVIESEEA---------------------YHIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 66 ~P~HLavI~d~~~~---------------------~~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
.|.|++|+.|+... .....+..+-+.+..+||++++.
T Consensus 46 ~p~~i~v~fD~~~~~~~fR~~l~p~YKa~R~~~Pe~l~~Q~~~i~~~l~~~gi~~~~~ 103 (256)
T PRK09482 46 QPTHAVAVFDGDARSSGWRHQLLPDYKAGRKPMPEALQQGLPAIRAAFEELGIDSWHA 103 (256)
T ss_pred CCCEEEEEEeCCCCCcccHHHHhHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCEecc
Confidence 49999999997421 02445555667777788887653
No 61
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.52 E-value=4e+02 Score=24.27 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=37.7
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+......|.+.||..- +|.+.++.. .+++.+.+.
T Consensus 29 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~--~~el~~~I~ 81 (282)
T PRK14169 29 VTPTLAVVLVGSDPASEVYVRNKQRRAEDIGVRSL-MFRLPEATT--QADLLAKVA 81 (282)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCC--HHHHHHHHH
Confidence 34589999999887677778889999999999764 556654432 344555444
No 62
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=23.42 E-value=1.5e+02 Score=20.34 Aligned_cols=36 Identities=19% Similarity=0.377 Sum_probs=27.4
Q ss_pred eEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCc
Q 025238 69 YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (255)
Q Consensus 69 HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~l 109 (255)
-|-|+.|.. ....++..||...|-+.+++.+-.|.+
T Consensus 29 ~l~v~~d~~-----~~~~di~~~~~~~g~~~~~~~~~~~~~ 64 (70)
T PF01206_consen 29 VLEVLVDDP-----AAVEDIPRWCEENGYEVVEVEEEGGEY 64 (70)
T ss_dssp EEEEEESST-----THHHHHHHHHHHHTEEEEEEEESSSSE
T ss_pred EEEEEECCc-----cHHHHHHHHHHHCCCEEEEEEEeCCEE
Confidence 466666643 347899999999999999998855554
No 63
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.19 E-value=3.3e+02 Score=24.66 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=29.2
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEE
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVC 101 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lS 101 (255)
.+++||+|+-|++..+..-+..-..||.+.||+..-
T Consensus 32 ~~p~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~ 67 (283)
T PRK14192 32 RTPILATILVGDDPASATYVRMKGNACRRVGMDSLK 67 (283)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEE
Confidence 455999999999876667778888999999997643
No 64
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=23.12 E-value=1.8e+02 Score=23.19 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=11.8
Q ss_pred ChHHHHHHHHHHHHcCCCEEEE
Q 025238 81 HIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 81 ~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
.+..+.+++.-|.++|+..+++
T Consensus 111 ~~~~vv~vmd~l~~aG~~~v~l 132 (141)
T PRK11267 111 DYETLMKVMDTLHQAGYLKIGL 132 (141)
T ss_pred CHHHHHHHHHHHHHcCCCeEEE
Confidence 3455555555555555555554
No 65
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.85 E-value=4.2e+02 Score=24.22 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=36.8
Q ss_pred CCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 67 P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.++||+|.-|++..+..-+......|.+.||..- ++.+.++. ..+++.+.+.
T Consensus 29 ~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~--~~~el~~~I~ 80 (287)
T PRK14173 29 VPHLRVVRLGEDPASVSYVRLKDRQAKALGLRSQ-VEVLPEST--SQEELLELIA 80 (287)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEE-EEECCCCC--CHHHHHHHHH
Confidence 3489999999887667778889999999999864 45555443 2344554443
No 66
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.63 E-value=3.6e+02 Score=24.62 Aligned_cols=42 Identities=14% Similarity=0.070 Sum_probs=33.4
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccC
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~ 108 (255)
.+++||+|.-|++..+..-+......|.+.||..- ++.+.++
T Consensus 30 ~~P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~ 71 (286)
T PRK14184 30 RAPGLAVILVGEDPASQVYVRNKERACEDAGIVSE-AFRLPAD 71 (286)
T ss_pred CCCEEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCC
Confidence 44599999999987677778889999999999875 4555543
No 67
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=22.61 E-value=65 Score=24.66 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHHcCCCCccccccccCHHHHHHHHHhcCCCCCCCcE
Q 025238 151 GKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDL 202 (255)
Q Consensus 151 Gr~~Iv~a~r~l~~~~~~~~~~~~~~~~~~~~e~~i~~~L~~~~~~~pePDL 202 (255)
.-.++.+.+|+|...+. .|+ ++.+++.+.|+......|-|.|
T Consensus 21 ~spev~~~Vr~LV~~L~-~~~---------i~~EeF~~~Lq~~lns~pqP~l 62 (96)
T PF07531_consen 21 QSPEVGENVRELVQNLV-DGK---------IEAEEFTSKLQEELNSSPQPYL 62 (96)
T ss_dssp C-CCHHHHHHHHHHHHH-TTS---------S-HHHHHHHHHHHCTSS--TTH
T ss_pred CChHHHHHHHHHHHHHH-cCC---------CCHHHHHHHHHHHhcCCCCcch
Confidence 55678888999887763 333 5667788778765555666654
No 68
>PF09633 DUF2023: Protein of unknown function (DUF2023); InterPro: IPR018594 This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. ; PDB: 2GUK_B.
Probab=22.00 E-value=1.7e+02 Score=22.60 Aligned_cols=60 Identities=12% Similarity=0.200 Sum_probs=37.1
Q ss_pred HcCCCEEEEEecccCccccHHHHHHHhhhcCCCCchhhhhhccCCCceEEEEEeCCCcHHHHHHHHHHHHHH
Q 025238 94 DIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMK 165 (255)
Q Consensus 94 ~~GI~~lSlYd~~g~lkr~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~v~lls~~dGr~~Iv~a~r~l~~~ 165 (255)
.-||+.+-+|-.+ +++.+...+++.+++ +++.- .+.+++ .+|+.. |+++=++++|.++..
T Consensus 11 ~KGvR~LvL~T~~---~~~~~~~~~rL~~~~-I~y~i---q~v~~~--~iNlFF---G~~~Ci~~ir~i~~~ 70 (101)
T PF09633_consen 11 KKGVRQLVLHTLP---KRYEEFAIARLERQG-IDYFI---QPVGNG--KINLFF---GRKECIEVIRSIVTR 70 (101)
T ss_dssp HCTS-SEEEEEEE---GGGHHHHHHHHHHTT---EEE---EE-TSS--EEEEEE---E-HHHHHHHHHHHTS
T ss_pred hhhhhhHhhhhCC---HhhHHHHHHHHHHCC-CCEEE---EEcCCC--CEEEEE---CCHHHHHHHHHHhCC
Confidence 4689999999776 677777778877643 22210 112333 455544 899999999999653
No 69
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=21.91 E-value=1.3e+02 Score=25.40 Aligned_cols=38 Identities=5% Similarity=0.034 Sum_probs=23.7
Q ss_pred CCCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEE
Q 025238 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 65 ~~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
..|||+-++.|++...+-.+..+.+.-..+.||.-.||
T Consensus 130 ~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tV 167 (193)
T cd01477 130 NYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITV 167 (193)
T ss_pred CCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEE
Confidence 46899988888643222133445555567888876555
No 70
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.84 E-value=4.5e+02 Score=23.99 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=33.7
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCc
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~l 109 (255)
.+++||+|.-|++..+..-+......|.+.||.+- +|.+.++.
T Consensus 31 ~~p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~-~~~l~~~~ 73 (285)
T PRK14189 31 HQPGLAVILVGDNPASQVYVRNKVKACEDNGFHSL-KDRYPADL 73 (285)
T ss_pred CCCeEEEEEeCCCchHHHHHHHHHHHHHHcCCEEE-EEECCCCC
Confidence 34599999999987677778899999999999864 55555443
No 71
>PF13305 WHG: WHG domain; PDB: 1ZK8_B 3ON2_B 3CJD_B.
Probab=21.67 E-value=1.2e+02 Score=20.76 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 025238 19 NLGLWIIWLLIHFAVDLWY 37 (255)
Q Consensus 19 ~~~~~~l~~~~h~~~s~~~ 37 (255)
..+...+|..+|.+.+|+.
T Consensus 59 ~~~~~~~wa~~HG~~~L~~ 77 (81)
T PF13305_consen 59 REIALALWAAVHGLASLFL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5677789999999999853
No 72
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.64 E-value=1.8e+02 Score=22.63 Aligned_cols=39 Identities=15% Similarity=0.137 Sum_probs=30.8
Q ss_pred CCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecc
Q 025238 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAE 106 (255)
Q Consensus 67 P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~ 106 (255)
|.+++|++...+. .-+.+.+++.++.+.|.+.+++=...
T Consensus 61 ~~~~vi~is~~g~-t~~~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDR-LEEKLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCCh-hHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 6788888886542 45679999999999999999886544
No 73
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.58 E-value=3.2e+02 Score=24.97 Aligned_cols=53 Identities=15% Similarity=0.219 Sum_probs=38.2
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|.-|++..+..-+......|.+.||.. .+|.+.++- ..+++.+.+.
T Consensus 31 ~~P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~--~~~el~~~I~ 83 (284)
T PRK14190 31 IVPGLAVILVGDDPASHSYVRGKKKAAEKVGIYS-ELYEFPADI--TEEELLALID 83 (284)
T ss_pred CCCeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCC--CHHHHHHHHH
Confidence 4559999999988666777788899999999976 466666543 2345555544
No 74
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.56 E-value=1.6e+02 Score=22.07 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=17.8
Q ss_pred CeEEEEeeCCCCCChHHHHHHHHHHHHcCCCE
Q 025238 68 RYLAIVIESEEAYHIPAVIQLLQWLVDIGVKH 99 (255)
Q Consensus 68 ~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~ 99 (255)
.|+|+.++. +++.++.+++.+.|++.
T Consensus 60 ~h~a~~v~~------~dl~~~~~~l~~~G~~~ 85 (123)
T cd08351 60 QHYAFLVSE------EEFDRIFARIRERGIDY 85 (123)
T ss_pred ceEEEEeCH------HHHHHHHHHHHHcCCce
Confidence 466665431 45788888888888864
No 75
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=20.76 E-value=1.8e+02 Score=25.91 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=31.0
Q ss_pred CCCeEEEEeeCCCC----------CChHHHHHHHHHHHHcCCCEEEEEe
Q 025238 66 KLRYLAIVIESEEA----------YHIPAVIQLLQWLVDIGVKHVCLYD 104 (255)
Q Consensus 66 ~P~HLavI~d~~~~----------~~~~~l~~l~~Wc~~~GI~~lSlYd 104 (255)
+|.-+.+|.+..+. ...+.+.++++-+.+.||+ ||+|-
T Consensus 83 kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~-VSLFi 130 (234)
T cd00003 83 KPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIR-VSLFI 130 (234)
T ss_pred CCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCE-EEEEe
Confidence 58889999986543 2578899999999999996 89883
No 76
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=20.58 E-value=4.4e+02 Score=24.34 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 80 YHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 80 ~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
+..+++.+.+.++.++|++.+++.-..|.-....+.+.+.+.
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~ 174 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELK 174 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHH
Confidence 367888889999999999888876666766666665555443
No 77
>PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities. The XPG protein signatures (PDOC00658 from PROSITEDOC) are never found outside the '53EXO' domains. The latter are found in more diverse proteins [, , ]. The number of amino acids that separate the two 53EXO domains, and the presence of accompanying motifs allow the diagnosis of several protein families. In the eubacterial type A DNA-polymerases, the N-terminal and internal domains are separated by a few amino acids, usually four. The pattern DNA_POLYMERASE_A (IPR001098 from INTERPRO) is always present towards the C terminus. Several eukaryotic structure-dependent endonucleases and exonucleases have the 53EXO domains separated by 24 to 27 amino acids, and the XPG protein signatures are always present. In several proteins from herpesviridae, the two 53EXO domains are separated by 50 to 120 amino acids. These proteins are implicated in the inhibition of the expression of the host genes. Eukaryotic DNA repair proteins with 600 to 700 amino acids between the 53_EXO domains all carry the XPG protein signatures. This entry represents the N-terminal resolvase-like domain, which has a 3-layer alpha/beta/alpha core structure and contains an alpha-helical arch [, ].; GO: 0003677 DNA binding, 0008409 5'-3' exonuclease activity; PDB: 1TAQ_A 1BGX_T 1TAU_A 1XO1_B 1EXN_A 1UT8_A 1UT5_B 3H7I_A 3H8J_A 3H8S_A ....
Probab=20.56 E-value=1.2e+02 Score=25.25 Aligned_cols=37 Identities=19% Similarity=0.347 Sum_probs=28.0
Q ss_pred CCCeEEEEeeCCCC-------------------CChHHHHHHHHHHHHcCCCEEEE
Q 025238 66 KLRYLAIVIESEEA-------------------YHIPAVIQLLQWLVDIGVKHVCL 102 (255)
Q Consensus 66 ~P~HLavI~d~~~~-------------------~~~~~l~~l~~Wc~~~GI~~lSl 102 (255)
.|.|++++.|+.+. .....+..+-+++..+||+.+..
T Consensus 50 ~p~~~vv~fD~~~~~fR~~l~p~YKanR~~~p~~l~~q~~~i~~~l~~~gi~~~~~ 105 (169)
T PF02739_consen 50 KPDYVVVAFDSKGPTFRKELYPEYKANRKPMPEELIPQLPYIKELLEALGIPVLEV 105 (169)
T ss_dssp TEEEEEEEEEBSSCHHHHHCCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHCCCCEecC
Confidence 58999999998753 03445667778888899998765
No 78
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.54 E-value=4.4e+02 Score=24.17 Aligned_cols=53 Identities=11% Similarity=0.134 Sum_probs=37.7
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccCccccHHHHHHHhh
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~lkr~~~~l~~~l~ 121 (255)
.+++||+|+-|++..+..-+......|.+.||..- +|.+.++.. .+++.+.+.
T Consensus 31 ~~P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~--e~~l~~~I~ 83 (294)
T PRK14187 31 LFPCLIVILVGDDPASQLYVRNKQRKAEMLGLRSE-TILLPSTIS--ESSLIEKIN 83 (294)
T ss_pred CCCeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCC--HHHHHHHHH
Confidence 45599999999987677778888999999999764 455554432 334444443
No 79
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.53 E-value=5.5e+02 Score=23.49 Aligned_cols=42 Identities=10% Similarity=-0.111 Sum_probs=32.6
Q ss_pred CCCeEEEEeeCCCCCChHHHHHHHHHHHHcCCCEEEEEecccC
Q 025238 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGI 108 (255)
Q Consensus 66 ~P~HLavI~d~~~~~~~~~l~~l~~Wc~~~GI~~lSlYd~~g~ 108 (255)
.+++||+|+-|++..+..-+......|.+.||..- +|.+...
T Consensus 37 ~~P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~-~~~l~~~ 78 (287)
T PRK14176 37 ITPGLATILVGDDPASKMYVRLKHKACERVGIRAE-DQFLPAD 78 (287)
T ss_pred CCCeEEEEEECCCcchHHHHHHHHHHHHHcCCEEE-EEECCCC
Confidence 34599999999887677778889999999999764 4455433
Done!