RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 025238
(255 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.0 bits (121), Expect = 2e-07
Identities = 34/234 (14%), Positives = 72/234 (30%), Gaps = 61/234 (26%)
Query: 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLR--YLA 71
L II I + W H+ C + +I S + L+ + R +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDR 377
Query: 72 IVIESEEAYHIPA-VIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAG 130
+ + A HIP ++ L+ W ++K ++ KL+ +L E+
Sbjct: 378 LSVFPPSA-HIPTILLSLI-W--------------FDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 131 ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEAL 190
+ + + I LE + + A+ ++ + Y
Sbjct: 422 KESTISIP-SIYLELKVKLENEYALHRS---IVDHY---------------------NIP 456
Query: 191 RAVGCKGPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRLKSMRYGSLLKAIY 244
+ P L Y H+G H+ ++ +L + ++
Sbjct: 457 KTFDSDDLIPPYLDQY--FYSHIGH-----------HLKNIEHPERMTLFRMVF 497
Score = 30.2 bits (67), Expect = 0.75
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 60 KALDI-DKLRYLAIVIESEEAYHI---PAVIQ---LLQWL--------VDIGVKHVCLYD 104
D D ++ EE HI + L W V V+ V +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 105 AEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAA-NLLF 163
+ ++ K ++ E L D++ S + +A L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 164 MKYVKL---GGSGK 174
K V + GSGK
Sbjct: 150 AKNVLIDGVLGSGK 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 1e-05
Identities = 56/306 (18%), Positives = 88/306 (28%), Gaps = 98/306 (32%)
Query: 24 IIWL--LIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIVI---ESEE 78
+I + L H+ V E G + L A+ I +S E
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHSQGL------VTAVAIAETDSWE 290
Query: 79 AYHIPAVIQLLQWLVDIGVK------HVCLYDAEGILKKSKE----------SILGKLNN 122
++ +V + + L IGV+ + L IL+ S E SI L
Sbjct: 291 SFF-VSVRKAITVLFFIGVRCYEAYPNTSL--PPSILEDSLENNEGVPSPMLSISN-LTQ 346
Query: 123 ATLFEEAGESNLLL---DHKHITL-----EF--ASFPDGKEAVAKAANLLFMKYVKLGGS 172
+ + ++N L I+L + P +++ NL K K S
Sbjct: 347 EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP---QSLY-GLNLTLRK-AK-APS 400
Query: 173 GKIQ------EEKI------------FTEAHMSEA-------LRAVGCKGPEPDLLL-VY 206
G Q E K+ F + A L D+ + VY
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 207 GP-----------------VRCHLGFPA-W----RIRYTEIVHMGRLKSMRYGSLLKAIY 244
V C + P W + + T I+ G + G L
Sbjct: 461 DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Query: 245 KFTMVR 250
T VR
Sbjct: 521 DGTGVR 526
Score = 35.8 bits (82), Expect = 0.014
Identities = 41/205 (20%), Positives = 63/205 (30%), Gaps = 58/205 (28%)
Query: 78 EAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILG-KLNN----ATLFEEAGES 132
+ Y Q + W + H D G SIL +NN F GE
Sbjct: 1634 DLYKTSKAAQDV-W--NRADNH--FKDTYGF------SILDIVINNPVNLTIHF--GGEK 1680
Query: 133 NLLLDHKHITLEFASFPDGK---EAVAKAANLLFMKYVKLGGSGKIQEEK-----IFTEA 184
+ + + F + DGK E + K N Y G + + +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL-- 1738
Query: 185 HMS----EALRAVGCKGPEPDLLLVYGPVRCH-LGFPAWRIRYTEIVHMG---------R 230
M E L++ KG P G H LG Y + +
Sbjct: 1739 -MEKAAFEDLKS---KGLIPADATFAG----HSLG------EYAALASLADVMSIESLVE 1784
Query: 231 LKSMRYGSLLK-AIYKFTMVRQNYG 254
+ R G ++ A+ + + R NYG
Sbjct: 1785 VVFYR-GMTMQVAVPRDELGRSNYG 1808
Score = 31.2 bits (70), Expect = 0.37
Identities = 29/160 (18%), Positives = 43/160 (26%), Gaps = 59/160 (36%)
Query: 68 RYLAIVIESEEAYHIPAVIQLLQWLV-----------DIGVKHV----CLYDAEGILKKS 112
++L V E + Q+L + DI H L + + L K+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKT 119
Query: 113 KESILGKLNNATL----FEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVK 168
KE I + + F++ S L + A L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALF----------------RAVGEGNAQL----VAI 159
Query: 169 LGGSGKIQEEKIFTEAHMSEALRAVGCKGPEPDLLLVYGP 208
GG G + F E LR DL Y
Sbjct: 160 FGGQGNT--DDYFEE------LR---------DLYQTYHV 182
Score = 27.3 bits (60), Expect = 6.2
Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 72/178 (40%)
Query: 37 YFALHIACAIES---Y--LIS-SGILKRYKALDIDKLR--YLAIVIESEEA----YHIPA 84
FA H S Y L S + ++ +++ R + + + +E Y + A
Sbjct: 1758 TFAGH------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 85 VI--QLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL----N-NATLFEE------AGE 131
+ ++ +++V E + K++ G L N N E AG+
Sbjct: 1812 INPGRVAASFSQEALQYVV----ERVGKRT-----GWLVEIVNYNV----ENQQYVAAGD 1858
Query: 132 SNLLLDHKHITLEFASFPDGKEAVAKAANLL-FMK-----YVKLGGSGKIQ--EEKIF 181
A+ N+L F+K ++L S ++ E +F
Sbjct: 1859 --------------------LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.088
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 22/48 (45%)
Query: 113 KESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVA-KAA 159
K+++ KL +++L L +A D A+A KA
Sbjct: 19 KQAL-KKL----------QASLKL--------YA--DDSAPALAIKAT 45
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 27.1 bits (61), Expect = 7.4
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 172 SGKIQEEKIFTEAHMSEALR 191
+ K+ +E F + EAL
Sbjct: 97 ALKVMDEPFFGPEDVEEALG 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.141 0.434
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,090,429
Number of extensions: 247871
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 11
Length of query: 255
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 164
Effective length of database: 4,160,982
Effective search space: 682401048
Effective search space used: 682401048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.1 bits)