RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 025238
         (255 letters)



>d1ueha_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Escherichia coli [TaxId: 562]}
          Length = 228

 Score = 37.4 bits (86), Expect = 9e-04
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 8/111 (7%)

Query: 137 DHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVGCK 196
            +  +TL  A+   G+  + +    L  K  +    G +Q ++I               +
Sbjct: 121 GNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQ----GNLQPDQID---EEMLNQHVCMHE 173

Query: 197 GPEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKF 246
               DL++  G       F  W+I Y E+     L           A+  F
Sbjct: 174 LAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAF 224


>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 25.1 bits (55), Expect = 3.9
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 78  EAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKE 114
              ++   +Q  +W  D      C+   EGIL+  +E
Sbjct: 12  GRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQE 48


>d1f75a_ c.101.1.1 (A:) Undecaprenyl diphosphate synthase
           {Micrococcus luteus [TaxId: 1270]}
          Length = 229

 Score = 26.3 bits (57), Expect = 3.9
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 198 PEPDLLLVYGPVRCHLGFPAWRIRYTEIVHMGRL-KSMRYGSLLKAIYKF 246
           P+P+LL+          F  W+  Y+E V +          SL + I  +
Sbjct: 177 PDPELLIRTSGEERLSNFLIWQCSYSEFVFIDEFWPDFNEESLAQCISIY 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 993,955
Number of extensions: 46154
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 4
Length of query: 255
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 172
Effective length of database: 1,268,006
Effective search space: 218097032
Effective search space used: 218097032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.0 bits)