Query 025240
Match_columns 255
No_of_seqs 243 out of 1605
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:54:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025240.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025240hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 8.4E-39 1.8E-43 272.3 2.6 160 1-160 1-188 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 100.0 3.2E-33 7E-38 204.7 2.0 73 2-74 1-73 (77)
3 cd00266 MADS_SRF_like SRF-like 100.0 3.1E-30 6.7E-35 191.6 3.3 72 2-73 1-73 (83)
4 smart00432 MADS MADS domain. 100.0 1.3E-29 2.9E-34 175.8 4.7 59 2-60 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 6.1E-29 1.3E-33 172.5 4.0 59 2-60 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 1.7E-27 3.6E-32 160.2 0.4 51 9-59 1-51 (51)
7 PF01486 K-box: K-box region; 99.8 6.3E-20 1.4E-24 140.9 11.2 86 87-172 15-100 (100)
8 KOG0015 Regulator of arginine 99.8 7.1E-20 1.5E-24 161.3 3.3 67 2-68 63-129 (338)
9 COG5068 ARG80 Regulator of arg 99.5 2.5E-14 5.4E-19 131.6 4.0 67 1-67 81-147 (412)
10 PF06005 DUF904: Protein of un 94.6 0.39 8.4E-06 34.6 8.4 51 118-173 1-51 (72)
11 PF06156 DUF972: Protein of un 88.8 3.6 7.7E-05 31.9 8.1 51 120-175 7-57 (107)
12 PRK13169 DNA replication intia 88.5 3.7 8.1E-05 32.0 8.0 51 120-175 7-57 (110)
13 PF01166 TSC22: TSC-22/dip/bun 84.7 2.4 5.2E-05 29.1 4.5 28 143-170 17-44 (59)
14 PF06698 DUF1192: Protein of u 84.7 2.3 4.9E-05 29.4 4.4 32 109-140 12-43 (59)
15 cd07429 Cby_like Chibby, a nuc 83.2 2.3 5E-05 33.0 4.4 25 150-174 75-99 (108)
16 PRK15422 septal ring assembly 82.2 16 0.00035 26.7 8.1 42 118-164 1-42 (79)
17 COG3074 Uncharacterized protei 81.9 15 0.00032 26.3 7.6 50 118-172 1-50 (79)
18 PF10584 Proteasome_A_N: Prote 81.1 0.17 3.6E-06 28.4 -1.9 13 44-56 4-16 (23)
19 COG4467 Regulator of replicati 80.8 8.2 0.00018 29.9 6.6 48 120-172 7-54 (114)
20 PRK10884 SH3 domain-containing 78.3 40 0.00087 29.1 11.0 23 89-111 91-113 (206)
21 KOG4797 Transcriptional regula 74.9 17 0.00038 28.2 6.8 25 144-168 71-95 (123)
22 PF10211 Ax_dynein_light: Axon 74.1 19 0.00042 30.5 7.8 107 50-171 81-187 (189)
23 smart00340 HALZ homeobox assoc 74.1 7.6 0.00016 24.9 3.9 27 149-175 7-33 (44)
24 TIGR02449 conserved hypothetic 72.9 30 0.00065 24.4 7.9 52 122-173 1-54 (65)
25 PRK10884 SH3 domain-containing 71.3 31 0.00067 29.8 8.5 20 88-107 97-116 (206)
26 PF07716 bZIP_2: Basic region 70.7 28 0.00061 23.1 6.5 38 133-174 15-52 (54)
27 PRK04098 sec-independent trans 69.0 2.8 6.2E-05 34.7 1.5 30 42-73 14-43 (158)
28 PF06156 DUF972: Protein of un 68.7 40 0.00086 26.1 7.8 33 144-176 19-51 (107)
29 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.0 59 0.0013 25.7 10.8 46 127-173 86-131 (132)
30 smart00338 BRLZ basic region l 66.8 31 0.00068 23.6 6.3 39 133-175 16-54 (65)
31 COG2433 Uncharacterized conser 64.9 1.1E+02 0.0024 30.8 11.6 83 91-175 422-509 (652)
32 PF08317 Spc7: Spc7 kinetochor 64.0 1.2E+02 0.0026 27.8 12.0 63 113-175 201-265 (325)
33 KOG4797 Transcriptional regula 61.7 16 0.00034 28.4 4.2 49 127-175 47-95 (123)
34 PF00170 bZIP_1: bZIP transcri 61.7 49 0.0011 22.6 6.5 38 133-174 16-53 (64)
35 PF09744 Jnk-SapK_ap_N: JNK_SA 61.0 95 0.0021 25.7 9.2 30 143-172 85-114 (158)
36 KOG0804 Cytoplasmic Zn-finger 60.5 1.4E+02 0.003 29.0 11.1 35 134-168 376-410 (493)
37 PF07106 TBPIP: Tat binding pr 60.3 50 0.0011 27.1 7.5 27 118-144 109-135 (169)
38 PRK00888 ftsB cell division pr 60.2 31 0.00068 26.4 5.8 32 144-175 31-62 (105)
39 PF07888 CALCOCO1: Calcium bin 59.6 1.9E+02 0.0042 28.8 12.3 29 31-60 78-113 (546)
40 smart00787 Spc7 Spc7 kinetocho 59.4 1.4E+02 0.0029 27.6 10.8 64 112-175 195-260 (312)
41 KOG1962 B-cell receptor-associ 59.4 69 0.0015 27.9 8.3 53 120-172 157-211 (216)
42 PF05529 Bap31: B-cell recepto 53.6 89 0.0019 26.2 8.1 36 140-175 154-189 (192)
43 PF04977 DivIC: Septum formati 53.0 35 0.00075 23.9 4.7 29 145-173 22-50 (80)
44 KOG0709 CREB/ATF family transc 52.4 16 0.00034 35.3 3.5 32 117-148 233-264 (472)
45 PF14645 Chibby: Chibby family 51.6 29 0.00062 27.2 4.4 26 148-173 72-97 (116)
46 PRK13169 DNA replication intia 50.5 1.2E+02 0.0026 23.6 7.7 33 144-176 19-51 (110)
47 PHA02592 52 DNA topisomerase I 50.4 2E+02 0.0044 27.8 10.8 44 25-73 284-327 (439)
48 KOG4005 Transcription factor X 50.2 1E+02 0.0023 27.4 7.9 31 143-173 107-137 (292)
49 PF10504 DUF2452: Protein of u 49.4 93 0.002 25.8 7.1 43 119-161 28-73 (159)
50 TIGR03752 conj_TIGR03752 integ 48.4 1.3E+02 0.0028 29.4 9.0 72 89-173 71-142 (472)
51 TIGR02338 gimC_beta prefoldin, 48.3 1.1E+02 0.0025 23.2 7.3 46 126-172 61-106 (110)
52 PF06005 DUF904: Protein of un 47.9 90 0.002 22.3 6.1 33 141-173 12-44 (72)
53 TIGR02894 DNA_bind_RsfA transc 47.7 1.6E+02 0.0036 24.5 12.1 61 115-175 77-139 (161)
54 COG2433 Uncharacterized conser 47.3 1.6E+02 0.0036 29.6 9.6 20 89-108 441-460 (652)
55 PF09726 Macoilin: Transmembra 47.0 3.4E+02 0.0074 27.9 12.6 19 161-179 643-661 (697)
56 PF03980 Nnf1: Nnf1 ; InterPr 46.7 75 0.0016 24.1 6.0 48 114-174 60-107 (109)
57 PF09730 BicD: Microtubule-ass 45.9 2.5E+02 0.0055 29.0 11.1 22 89-110 32-53 (717)
58 PF02183 HALZ: Homeobox associ 44.6 86 0.0019 20.3 5.8 36 140-175 5-40 (45)
59 cd00187 TOP4c DNA Topoisomeras 43.5 1.2E+02 0.0027 29.3 8.2 63 4-73 253-328 (445)
60 KOG0971 Microtubule-associated 43.1 4.5E+02 0.0097 28.2 13.1 52 88-139 329-389 (1243)
61 PF04880 NUDE_C: NUDE protein, 43.0 49 0.0011 27.7 4.6 43 123-170 2-47 (166)
62 TIGR02449 conserved hypothetic 42.2 90 0.002 22.0 5.2 24 149-172 9-32 (65)
63 TIGR02209 ftsL_broad cell divi 41.7 91 0.002 22.2 5.5 32 144-175 28-59 (85)
64 PF07558 Shugoshin_N: Shugoshi 41.0 37 0.0008 22.1 2.9 33 139-171 13-45 (46)
65 PF07888 CALCOCO1: Calcium bin 40.4 3.9E+02 0.0084 26.7 11.2 16 44-59 73-94 (546)
66 KOG3119 Basic region leucine z 39.9 1.3E+02 0.0028 27.0 7.3 44 128-175 200-243 (269)
67 PF10226 DUF2216: Uncharacteri 39.9 98 0.0021 26.5 6.0 30 139-168 47-76 (195)
68 PF10186 Atg14: UV radiation r 39.1 2.7E+02 0.0058 24.4 10.3 8 57-64 13-20 (302)
69 PF10211 Ax_dynein_light: Axon 39.1 2.4E+02 0.0052 23.9 10.0 47 128-174 137-183 (189)
70 PF04849 HAP1_N: HAP1 N-termin 38.7 1.8E+02 0.0039 26.8 8.0 31 145-175 239-269 (306)
71 PF04999 FtsL: Cell division p 37.6 1.1E+02 0.0024 22.5 5.6 33 143-175 38-70 (97)
72 KOG4643 Uncharacterized coiled 37.5 1.3E+02 0.0028 32.2 7.5 45 130-174 283-328 (1195)
73 PF11365 DUF3166: Protein of u 37.3 1.1E+02 0.0025 23.2 5.5 33 143-175 11-43 (96)
74 KOG4403 Cell surface glycoprot 36.5 3.4E+02 0.0073 26.4 9.5 21 91-111 259-279 (575)
75 TIGR03545 conserved hypothetic 36.4 2.8E+02 0.006 27.7 9.5 58 87-144 178-242 (555)
76 PF12709 Kinetocho_Slk19: Cent 36.2 1.8E+02 0.004 21.7 6.6 29 145-173 47-75 (87)
77 PF04849 HAP1_N: HAP1 N-termin 35.6 56 0.0012 30.1 4.2 27 149-175 162-188 (306)
78 PF14723 SSFA2_C: Sperm-specif 35.6 70 0.0015 26.9 4.4 18 122-139 160-177 (179)
79 smart00030 CLb CLUSTERIN Beta 35.3 1.7E+02 0.0036 25.3 6.7 27 115-141 9-35 (206)
80 PRK14127 cell division protein 35.0 1.1E+02 0.0023 23.8 5.1 47 114-175 19-65 (109)
81 COG0139 HisI Phosphoribosyl-AM 34.8 14 0.00029 28.9 0.1 39 15-53 48-95 (111)
82 PRK13729 conjugal transfer pil 34.6 3.1E+02 0.0068 26.8 9.3 32 144-175 94-125 (475)
83 KOG4001 Axonemal dynein light 33.7 3.2E+02 0.007 23.8 8.7 16 158-173 239-254 (259)
84 PF04859 DUF641: Plant protein 33.7 2.5E+02 0.0054 22.5 9.2 50 119-169 81-130 (131)
85 KOG0930 Guanine nucleotide exc 32.5 1.3E+02 0.0028 27.6 5.9 39 115-162 8-46 (395)
86 PF15397 DUF4618: Domain of un 32.1 3.3E+02 0.0071 24.5 8.4 37 139-175 185-221 (258)
87 PF01093 Clusterin: Clusterin; 31.8 1.6E+02 0.0034 28.6 6.7 23 116-138 4-26 (436)
88 PRK09822 lipopolysaccharide co 30.8 36 0.00079 30.2 2.1 38 21-59 120-160 (269)
89 PF07407 Seadorna_VP6: Seadorn 30.6 1.4E+02 0.003 27.9 5.8 41 113-167 24-64 (420)
90 COG4477 EzrA Negative regulato 30.2 4.9E+02 0.011 26.0 9.8 79 97-176 353-432 (570)
91 PF09941 DUF2173: Uncharacteri 30.1 34 0.00073 26.6 1.6 27 32-59 3-29 (108)
92 PF01502 PRA-CH: Phosphoribosy 30.0 10 0.00022 27.5 -1.2 38 16-53 17-63 (75)
93 cd04769 HTH_MerR2 Helix-Turn-H 29.9 2.1E+02 0.0047 21.8 6.2 42 117-158 56-104 (116)
94 smart00338 BRLZ basic region l 29.9 1.8E+02 0.0039 19.7 5.3 27 144-170 37-63 (65)
95 TIGR02231 conserved hypothetic 29.8 3.2E+02 0.007 26.7 8.8 51 116-174 122-172 (525)
96 PRK09413 IS2 repressor TnpA; R 29.7 1.5E+02 0.0031 23.0 5.3 28 145-172 76-103 (121)
97 PF09789 DUF2353: Uncharacteri 29.6 4.6E+02 0.01 24.3 11.6 51 123-174 138-209 (319)
98 PF14282 FlxA: FlxA-like prote 28.9 2.6E+02 0.0057 21.2 9.1 52 91-159 19-70 (106)
99 KOG0977 Nuclear envelope prote 28.5 5.3E+02 0.012 25.8 9.9 17 157-173 172-188 (546)
100 KOG4673 Transcription factor T 28.2 5.1E+02 0.011 26.9 9.7 30 139-168 604-633 (961)
101 cd01109 HTH_YyaN Helix-Turn-He 28.1 2.7E+02 0.0058 21.1 6.6 52 117-169 57-108 (113)
102 KOG0183 20S proteasome, regula 28.0 32 0.0007 30.0 1.3 19 41-59 4-24 (249)
103 PF14662 CCDC155: Coiled-coil 27.7 3.9E+02 0.0085 22.9 9.4 45 88-137 40-86 (193)
104 COG4026 Uncharacterized protei 27.5 4.4E+02 0.0095 23.4 9.3 12 40-51 6-17 (290)
105 PF07889 DUF1664: Protein of u 27.5 3.2E+02 0.0069 21.8 7.8 23 122-144 69-91 (126)
106 PF09158 MotCF: Bacteriophage 27.1 20 0.00043 27.6 -0.1 25 4-28 18-43 (103)
107 PF10224 DUF2205: Predicted co 26.9 2E+02 0.0043 21.1 5.1 28 148-175 38-65 (80)
108 PF09278 MerR-DNA-bind: MerR, 26.7 2E+02 0.0043 19.2 5.5 11 117-127 14-24 (65)
109 PF06785 UPF0242: Uncharacteri 25.6 5.7E+02 0.012 24.0 9.8 45 128-173 130-174 (401)
110 KOG0184 20S proteasome, regula 25.6 36 0.00078 29.9 1.2 24 36-59 3-28 (254)
111 PRK11637 AmiB activator; Provi 25.5 5.8E+02 0.013 24.1 10.9 78 87-173 50-129 (428)
112 PF13874 Nup54: Nucleoporin co 24.9 3.6E+02 0.0078 21.5 8.1 55 121-175 61-121 (141)
113 COG4831 Roadblock/LC7 domain [ 24.9 42 0.0009 25.6 1.3 28 31-59 4-31 (109)
114 cd01107 HTH_BmrR Helix-Turn-He 24.5 2.8E+02 0.0061 20.8 5.9 39 116-160 57-95 (108)
115 PF05529 Bap31: B-cell recepto 24.5 3.1E+02 0.0066 22.9 6.7 14 148-161 176-189 (192)
116 TIGR00606 rad50 rad50. This fa 24.4 8.5E+02 0.018 26.9 11.6 51 118-168 822-878 (1311)
117 PF09755 DUF2046: Uncharacteri 24.3 5.7E+02 0.012 23.6 11.3 22 151-172 258-279 (310)
118 TIGR02051 MerR Hg(II)-responsi 23.9 3.1E+02 0.0068 21.2 6.2 52 117-171 56-107 (124)
119 PF08432 Vfa1: AAA-ATPase Vps4 23.8 2.2E+02 0.0047 23.9 5.6 68 38-106 10-84 (182)
120 COG4467 Regulator of replicati 23.5 3.6E+02 0.0078 21.0 7.5 30 146-175 21-50 (114)
121 PF15070 GOLGA2L5: Putative go 23.4 2.6E+02 0.0056 28.3 6.9 19 88-106 84-102 (617)
122 COG5068 ARG80 Regulator of arg 23.3 43 0.00094 31.9 1.3 47 8-60 18-64 (412)
123 cd00632 Prefoldin_beta Prefold 23.2 3.3E+02 0.007 20.4 8.2 40 133-173 64-103 (105)
124 PRK13922 rod shape-determining 23.0 1.8E+02 0.0039 25.7 5.3 27 146-172 82-111 (276)
125 PF04508 Pox_A_type_inc: Viral 23.0 1E+02 0.0023 17.2 2.3 16 92-107 2-17 (23)
126 PRK13923 putative spore coat p 22.8 2.9E+02 0.0063 23.2 6.0 27 146-172 110-136 (170)
127 TIGR01950 SoxR redox-sensitive 22.7 2.9E+02 0.0062 22.2 5.9 54 117-170 57-110 (142)
128 KOG3612 PHD Zn-finger protein 22.4 3.7E+02 0.0079 26.9 7.4 22 88-109 457-478 (588)
129 PF14662 CCDC155: Coiled-coil 21.9 5.1E+02 0.011 22.2 10.5 26 147-172 116-141 (193)
130 cd04784 HTH_CadR-PbrR Helix-Tu 21.6 3.8E+02 0.0083 20.6 7.0 55 117-172 57-111 (127)
131 cd04790 HTH_Cfa-like_unk Helix 21.6 2.9E+02 0.0062 22.9 5.9 47 117-170 58-104 (172)
132 PF09789 DUF2353: Uncharacteri 21.6 6.5E+02 0.014 23.3 10.1 45 130-175 70-114 (319)
133 PF07798 DUF1640: Protein of u 21.1 4.8E+02 0.01 21.5 8.3 9 165-173 124-132 (177)
134 KOG2417 Predicted G-protein co 21.1 1.4E+02 0.0031 28.2 4.2 30 121-150 186-215 (462)
135 PRK09514 zntR zinc-responsive 20.6 3.8E+02 0.0082 21.3 6.2 55 117-171 58-112 (140)
136 cd04770 HTH_HMRTR Helix-Turn-H 20.5 3.9E+02 0.0085 20.3 7.5 53 117-170 57-109 (123)
137 PF11629 Mst1_SARAH: C termina 20.1 2.3E+02 0.0049 18.8 3.8 18 115-132 5-22 (49)
138 cd01106 HTH_TipAL-Mta Helix-Tu 20.1 3.7E+02 0.008 19.9 6.0 15 117-131 57-71 (103)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=8.4e-39 Score=272.28 Aligned_cols=160 Identities=44% Similarity=0.593 Sum_probs=128.5
Q ss_pred CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccc--ccccccccccccccchh
Q 025240 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG--MKRTLSRYNKCLDFSEV 78 (255)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~s--m~~ileRY~~~~~~~~~ 78 (255)
|||+||+|+||+|.++|||||+|||+||||||+||||||||+||||||||+|++|+|++++ |..|++||.........
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999876 99999999876522110
Q ss_pred hH---Hhhh--------------hh----hhhHHHHHhhHHHHHHHH---HHHhhhcCCCCCCCCH-HHHHHHHHHHHHH
Q 025240 79 AV---AEYK--------------TE----KQDSKEVDGLKDEIAKLQ---MKQLRLLGKDLNGLSL-KELQLLEQDLNEG 133 (255)
Q Consensus 79 ~~---~~~~--------------~e----~~~~~e~~kLk~ei~~Lq---~~~r~l~Ge~L~~Ls~-~EL~~LE~~Le~~ 133 (255)
.. .... .+ .........++...+.++ ...+++.|++|.+++. .+|..++.+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~ 160 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS 160 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence 00 0000 00 012334555666666665 4488999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 025240 134 LLLVKEKKEKLLMEQLE-QSRVQEQRAM 160 (255)
Q Consensus 134 L~~VR~RK~qll~~qi~-~l~~ke~~l~ 160 (255)
+..+|..+...+.+++. .++.++..+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (195)
T KOG0014|consen 161 LHNSRSSKSKPLSDSNFQVLQEKEKSLE 188 (195)
T ss_pred hcCCCCCCCcCCcchhhhhhcccchhcc
Confidence 99999999999988876 4454444443
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=3.2e-33 Score=204.73 Aligned_cols=73 Identities=70% Similarity=1.087 Sum_probs=71.1
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLD 74 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~~ 74 (255)
||+||+|++|||..+|++||+||+.||||||+||||||||+||||||||+|++|+|+++++++||+||...++
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~ 73 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG 73 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999998763
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.1e-30 Score=191.63 Aligned_cols=72 Identities=57% Similarity=0.860 Sum_probs=69.3
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccc-cccccccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSG-MKRTLSRYNKCL 73 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~s-m~~ileRY~~~~ 73 (255)
||+||+|++|+|..+|+|||+||+.||||||+||||||||+||+|||||+|+.|+|++++ +..+|+||...+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~ 73 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS 73 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999999999999999999999999988766 999999998876
No 4
>smart00432 MADS MADS domain.
Probab=99.96 E-value=1.3e-29 Score=175.75 Aligned_cols=59 Identities=75% Similarity=1.126 Sum_probs=57.7
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~ 60 (255)
||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=6.1e-29 Score=172.55 Aligned_cols=59 Identities=80% Similarity=1.159 Sum_probs=57.5
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~ 60 (255)
||+||+|++|+|..+|++||+||+.||||||+||||||||+||+|||||+|++|.|+++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999864
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.93 E-value=1.7e-27 Score=160.20 Aligned_cols=51 Identities=61% Similarity=0.983 Sum_probs=47.1
Q ss_pred EEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccc
Q 025240 9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59 (255)
Q Consensus 9 krIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s 59 (255)
|+|+|.+.|++||+||+.||||||+|||+||||+||||||||+|++|.|+|
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 689999999999999999999999999999999999999999999999986
No 7
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.83 E-value=6.3e-20 Score=140.95 Aligned_cols=86 Identities=42% Similarity=0.597 Sum_probs=83.5
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 87 KQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETL 166 (255)
Q Consensus 87 ~~~~~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~L 166 (255)
+.+..++.+|+.+++.|+..+|+++|++|++|+++||++||.+|+.+|.+||+||+++|+++|+.|++|+..+.++|..|
T Consensus 15 e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L 94 (100)
T PF01486_consen 15 EELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQL 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 025240 167 RRQVEE 172 (255)
Q Consensus 167 r~~~~~ 172 (255)
+.+++|
T Consensus 95 ~~~~~e 100 (100)
T PF01486_consen 95 RQKIEE 100 (100)
T ss_pred HHHhcC
Confidence 999864
No 8
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.78 E-value=7.1e-20 Score=161.33 Aligned_cols=67 Identities=39% Similarity=0.654 Sum_probs=64.0
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSR 68 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileR 68 (255)
||.||+|.+|||+..|.||||||+.|+||||+|||||.+.+|-|+|.|.+|-+|.|+.+-++.||..
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s 129 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITS 129 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccc
Confidence 7999999999999999999999999999999999999999999999999999999999888777754
No 9
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.47 E-value=2.5e-14 Score=131.62 Aligned_cols=67 Identities=36% Similarity=0.561 Sum_probs=63.0
Q ss_pred CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccc
Q 025240 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLS 67 (255)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ile 67 (255)
|||+||.|..|+|+.+|.|||+||+.|++|||+||+||.+.+|.|+|.|.+|+++.|+.+..+.|+.
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~ 147 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVK 147 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCccccccc
Confidence 7899999999999999999999999999999999999999999999999999999999876665553
No 10
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=94.62 E-value=0.39 Score=34.59 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
++++.|.+||..+..++..|. +|..+++.|+.+-..|.++|..|+...+.+
T Consensus 1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 578899999999999999884 455666777777555555555555554443
No 11
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.75 E-value=3.6 Score=31.90 Aligned_cols=51 Identities=35% Similarity=0.457 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 120 ~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
++.|.+||.+|..-+..|.+-|.++ ..|-..-..|.-||..||..+.+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~-----~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQL-----QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567778888887777776666554 34445556777888889988887654
No 12
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.46 E-value=3.7 Score=31.99 Aligned_cols=51 Identities=31% Similarity=0.360 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 120 ~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
++.+.+||.+|..-+..+.+-|.++ ..|-..-..|.-||..||..+.+...
T Consensus 7 fd~l~~le~~l~~l~~el~~LK~~~-----~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 7 FDALDDLEQNLGVLLKELGALKKQL-----AELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567888888888888877766555 34545566788899999999988643
No 13
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=84.75 E-value=2.4 Score=29.15 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 143 KLLMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
+.+.++|..|..+...|+.||..||..+
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567788888888888888888888764
No 14
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=84.66 E-value=2.3 Score=29.44 Aligned_cols=32 Identities=25% Similarity=0.276 Sum_probs=25.4
Q ss_pred hhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 025240 109 RLLGKDLNGLSLKELQLLEQDLNEGLLLVKEK 140 (255)
Q Consensus 109 ~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~R 140 (255)
+..|+||+.||++||..--..|+.-+.++++-
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred cccCCCchhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999988777777666666543
No 15
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=83.17 E-value=2.3 Score=33.02 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 150 EQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 150 ~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
..++++.+.|+|||..|+-|++-+-
T Consensus 75 ~rlkkk~~~LeEENNlLklKievLL 99 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKIEVLL 99 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888899999999999987654
No 16
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=82.17 E-value=16 Score=26.70 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENE 164 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~ 164 (255)
||++=|.+||..+..++..| .+|.=+|+.|+.|-..|.+++.
T Consensus 1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 57788899999999998887 4555667777776555555433
No 17
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.91 E-value=15 Score=26.31 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
||++=|.+||..+..++..| .|+.=+|+.|+.|...|..|-..++...++
T Consensus 1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q~~q~~rea 50 (79)
T COG3074 1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQNAQHQREA 50 (79)
T ss_pred CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 56777888888888887776 455556677766655554444444443333
No 18
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=81.13 E-value=0.17 Score=28.35 Aligned_cols=13 Identities=38% Similarity=0.853 Sum_probs=10.5
Q ss_pred EEEEecCCCCccc
Q 025240 44 AVIIFSNTGKLFE 56 (255)
Q Consensus 44 alIvfS~~gkl~e 56 (255)
.+.+|||.|+||.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 3457999999986
No 19
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=80.80 E-value=8.2 Score=29.89 Aligned_cols=48 Identities=27% Similarity=0.295 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 120 LKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 120 ~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
++.+.+||.+|-.-+..|-+-|.++ ..|-..-..|+-||..||+.+.+
T Consensus 7 Fd~v~~le~~l~~l~~el~~lK~~l-----~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 7 FDQVDNLEEQLGVLLAELGGLKQHL-----GSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhHHHHhhHHHHHHHhCC
Confidence 4677888888888887777766554 33434445677788888888766
No 20
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.33 E-value=40 Score=29.10 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=14.0
Q ss_pred hHHHHHhhHHHHHHHHHHHhhhc
Q 025240 89 DSKEVDGLKDEIAKLQMKQLRLL 111 (255)
Q Consensus 89 ~~~e~~kLk~ei~~Lq~~~r~l~ 111 (255)
....+..++++++.++.++..+.
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667777777776655544
No 21
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=74.88 E-value=17 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
.|.++|.+|..+...|.+||..||.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555554
No 22
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=74.08 E-value=19 Score=30.54 Aligned_cols=107 Identities=20% Similarity=0.230 Sum_probs=47.3
Q ss_pred CCCCccccccccccccccccccccccchhhHHhhhhhhhhHHHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHH
Q 025240 50 NTGKLFEFSSSGMKRTLSRYNKCLDFSEVAVAEYKTEKQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQD 129 (255)
Q Consensus 50 ~~gkl~e~~s~sm~~ileRY~~~~~~~~~~~~~~~~e~~~~~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~ 129 (255)
..|-|..-....+..+|++|.....+.-.-......+ .......+..+|..|..+...+..+ +.+|..-...
T Consensus 81 ERGlLL~rvrde~~~~l~~y~~l~~s~~~f~~rk~l~--~e~~~~~l~~~i~~L~~e~~~L~~~------~~~l~~~~e~ 152 (189)
T PF10211_consen 81 ERGLLLLRVRDEYRMTLDAYQTLYESSIAFGMRKALQ--AEQGKQELEEEIEELEEEKEELEKQ------VQELKNKCEQ 152 (189)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH
Confidence 4566654333456667777766542211101111110 0111334445555555443332221 2344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 130 LNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVE 171 (255)
Q Consensus 130 Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~ 171 (255)
++......++.......++|+.|++ .|..|+.+++
T Consensus 153 ~ek~~~e~~~~~~k~~~~ei~~lk~-------~~~ql~~~l~ 187 (189)
T PF10211_consen 153 LEKREEELRQEEEKKHQEEIDFLKK-------QNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence 4444444444445555555555443 4556666554
No 23
>smart00340 HALZ homeobox associated leucin zipper.
Probab=74.07 E-value=7.6 Score=24.94 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 149 LEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 149 i~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
-+.|++-=..|-+||.+|++.++++..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777899999999999999987
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=72.85 E-value=30 Score=24.36 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 122 ELQLLEQDLNEGLLLVKE--KKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 122 EL~~LE~~Le~~L~~VR~--RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
||+.||.+|+.-+..... +-+.++.+++..++..-..|.+.|..=|.+|+.+
T Consensus 1 ~L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 1 ELQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888887766543 3345566666666665556666666666666654
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=71.33 E-value=31 Score=29.82 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=10.8
Q ss_pred hhHHHHHhhHHHHHHHHHHH
Q 025240 88 QDSKEVDGLKDEIAKLQMKQ 107 (255)
Q Consensus 88 ~~~~e~~kLk~ei~~Lq~~~ 107 (255)
..+++++.++.++..+..+.
T Consensus 97 ~le~el~~l~~~l~~~~~~~ 116 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTW 116 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHH
Confidence 34455555665555555443
No 26
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=70.69 E-value=28 Score=23.09 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 133 GLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 133 ~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
+-.+-|.||.+- +..|..+...|..+|..|+.++..+.
T Consensus 15 AA~r~R~rkk~~----~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 15 AARRSRQRKKQR----EEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555443 46677788899999999999998764
No 27
>PRK04098 sec-independent translocase; Provisional
Probab=69.02 E-value=2.8 Score=34.70 Aligned_cols=30 Identities=20% Similarity=0.260 Sum_probs=18.2
Q ss_pred cEEEEEecCCCCcccccccccccccccccccc
Q 025240 42 EVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCL 73 (255)
Q Consensus 42 eValIvfS~~gkl~e~~s~sm~~ileRY~~~~ 73 (255)
=||||||+|. ||+++.- .+-+.+..|++..
T Consensus 14 vVaLlvfGP~-KLP~~~r-~lGk~ir~~K~~~ 43 (158)
T PRK04098 14 VVAIIFLGPD-KLPQAMV-DIAKFFKAVKKTI 43 (158)
T ss_pred HHHHhhcCch-HHHHHHH-HHHHHHHHHHHHH
Confidence 3788999886 7776543 2444455555443
No 28
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.70 E-value=40 Score=26.08 Aligned_cols=33 Identities=39% Similarity=0.427 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEELRGF 176 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~~ 176 (255)
.|.++|..|+.....|.+||..|+-.-+.++..
T Consensus 19 ~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 19 QLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999998888763
No 29
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=67.99 E-value=59 Score=25.74 Aligned_cols=46 Identities=24% Similarity=0.267 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 127 EQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 127 E~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
...|+..-..--.+| ..|..+|..++.+-..|...|..|..+|+.+
T Consensus 86 ~~~l~~~e~sw~~qk-~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 86 KAELEESEASWEEQK-EQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333333333333444 3457889999999999999999999998754
No 30
>smart00338 BRLZ basic region leucin zipper.
Probab=66.83 E-value=31 Score=23.64 Aligned_cols=39 Identities=26% Similarity=0.412 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 133 GLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 133 ~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+-.+.|.||.+ .+..|..+...|..+|..|+.++..+..
T Consensus 16 aA~~~R~rKk~----~~~~Le~~~~~L~~en~~L~~~~~~l~~ 54 (65)
T smart00338 16 AARRSRERKKA----EIEELERKVEQLEAENERLKKEIERLRR 54 (65)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666654 4577888888899999999988877654
No 31
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.88 E-value=1.1e+02 Score=30.84 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=45.3
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 91 KEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVK-----EKKEKLLMEQLEQSRVQEQRAMLENET 165 (255)
Q Consensus 91 ~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR-----~RK~qll~~qi~~l~~ke~~l~~eN~~ 165 (255)
.++.++...++.|+.+++.|..+- ..| -+++..|+..|+..-.+++ .|+-+.+-..|+.|+++-..-...=..
T Consensus 422 ~~i~~~~~~ve~l~~e~~~L~~~~-ee~-k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~ 499 (652)
T COG2433 422 KRIKKLEETVERLEEENSELKREL-EEL-KREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEE 499 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544443320 000 0566667777766655554 334445556677776665555555566
Q ss_pred HHHHHHHHhC
Q 025240 166 LRRQVEELRG 175 (255)
Q Consensus 166 Lr~~~~~~~~ 175 (255)
|+.++.++..
T Consensus 500 L~~~l~~l~k 509 (652)
T COG2433 500 LERKLAELRK 509 (652)
T ss_pred HHHHHHHHHH
Confidence 7777777663
No 32
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=63.95 E-value=1.2e+02 Score=27.84 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 113 KDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLL--MEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 113 e~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll--~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
..++.++..+|..+-..|...-..|.++|..+- ..+++.++.+...+.++-..+..+|.+...
T Consensus 201 ~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 201 EEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999988888887776653 334555555555555555566666666553
No 33
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.69 E-value=16 Score=28.40 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 127 EQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 127 E~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+.+|.++.-|+.--.-...+|++.|+.+...|.+.|..|++.=.-+..
T Consensus 47 DNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 47 DNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666766656666789999999999999999999987655554
No 34
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.66 E-value=49 Score=22.61 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 133 GLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 133 ~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
+-.+.|.||... |+.|..+...|..+|..|+..+..+.
T Consensus 16 AAr~~R~RKk~~----~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 16 AARRSRQRKKQY----IEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666554 46677777777777777777766554
No 35
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=61.02 E-value=95 Score=25.70 Aligned_cols=30 Identities=13% Similarity=0.131 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 143 KLLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
..+..+...|..+...|+.+|+.|..++..
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445556677778888888899888877754
No 36
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=60.54 E-value=1.4e+02 Score=28.98 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 134 LLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 134 L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
.+.+-++|-+.+...++.++++...+.|+|+.|++
T Consensus 376 ~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 376 EKKIVERKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555566666666666666666666554
No 37
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=60.28 E-value=50 Score=27.13 Aligned_cols=27 Identities=33% Similarity=0.323 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKL 144 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~ql 144 (255)
++.+||...-..|+.-+..+.+|-..+
T Consensus 109 ~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 109 PTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554444
No 38
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=60.16 E-value=31 Score=26.43 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
-+..+++.++.+...+..+|..|+.++..+..
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34556677777777778888888888877654
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=59.55 E-value=1.9e+02 Score=28.79 Aligned_cols=29 Identities=24% Similarity=0.344 Sum_probs=16.4
Q ss_pred hhHhhhhccCCcEEEEEecC-CC------Cccccccc
Q 025240 31 KAQELAILCDAEVAVIIFSN-TG------KLFEFSSS 60 (255)
Q Consensus 31 KA~ELSvLCdaeValIvfS~-~g------kl~e~~s~ 60 (255)
+|+.|--. |.+-=..||.. .| .+|.|..+
T Consensus 78 ~ayyLPk~-~~e~YqfcYv~~~g~V~G~S~pFqf~~~ 113 (546)
T PF07888_consen 78 QAYYLPKD-DDEFYQFCYVDQKGEVRGASTPFQFRAP 113 (546)
T ss_pred CcccCCCC-CCCeEEEEEECCCccEEEecCCcccCCC
Confidence 47777754 34455556665 33 35777654
No 40
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.45 E-value=1.4e+02 Score=27.56 Aligned_cols=64 Identities=19% Similarity=0.190 Sum_probs=40.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 112 GKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLM--EQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 112 Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~--~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
-++++.++.++|..+-..|..-...|...+.++-. +++..+..+.....+.-..++.+|.+.+.
T Consensus 195 ~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 195 EDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999888888777666522 23333333333333344445555655543
No 41
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.39 E-value=69 Score=27.95 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 120 LKELQLLEQDLNEGLLLVK--EKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 120 ~~EL~~LE~~Le~~L~~VR--~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
..|+..|+..++..-.... ..+..-+..|.+.+++.-.+|.+||..|+.+++-
T Consensus 157 ~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 157 KADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhc
Confidence 4566666666666544432 2333445667777777777888899999988853
No 42
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=53.61 E-value=89 Score=26.18 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 140 KKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 140 RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+.....++|+.++++-.....+-..|++|.+.+..
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566788888888877788888889999887654
No 43
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.01 E-value=35 Score=23.91 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
+..++..++.+...+..+|..|+.++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888889999999999999999887
No 44
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=52.39 E-value=16 Score=35.33 Aligned_cols=32 Identities=25% Similarity=0.117 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQ 148 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~q 148 (255)
|.++.+.--|-+.=|..|++||.+.......|
T Consensus 233 G~slPs~lPLTKaEEriLKrvRRKIrNK~SAQ 264 (472)
T KOG0709|consen 233 GYSLPSKLPLTKAEERILKRVRRKIRNKRSAQ 264 (472)
T ss_pred cCcCcccCCchHHHHHHHHHHHHHHHhhhhhH
Confidence 55666666777777888888887665555554
No 45
>PF14645 Chibby: Chibby family
Probab=51.59 E-value=29 Score=27.23 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 148 QLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 148 qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
+...++++.+.|.|||..|+-|++-+
T Consensus 72 ~~~~l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 72 ENQRLRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667778888999988887654
No 46
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=50.50 E-value=1.2e+02 Score=23.61 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEELRGF 176 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~~ 176 (255)
.+.+++..|+.....+.+||..|+-.-+.++..
T Consensus 19 ~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~ 51 (110)
T PRK13169 19 VLLKELGALKKQLAELLEENTALRLENDKLRER 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347899999999999999999999998777763
No 47
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=50.37 E-value=2e+02 Score=27.77 Aligned_cols=44 Identities=11% Similarity=0.226 Sum_probs=29.1
Q ss_pred cchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccc
Q 025240 25 RAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCL 73 (255)
Q Consensus 25 r~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~ 73 (255)
-++|+|+- .|.+ -.-+-+++|.++|++..| .++.+||..|-.+.
T Consensus 284 ~~~L~k~~-~L~~--~~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~~R 327 (439)
T PHA02592 284 HEKIMKDF-GLIE--RVSQNITVINENGKLKVY--ENAEDLIRDFVEIR 327 (439)
T ss_pred HHHHHHhc-Cchh--eeeeeEEEEecCCeeeec--CCHHHHHHHHHHHH
Confidence 34666543 2222 223678889899988887 45888998886654
No 48
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=50.21 E-value=1e+02 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 143 KLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
+.|..+-+.|+.+-+.|..+|..|+..++++
T Consensus 107 ~~L~~en~~Lr~~n~~L~~~n~el~~~le~~ 137 (292)
T KOG4005|consen 107 EILQNENDSLRAINESLLAKNHELDSELELL 137 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4444555556666666666666666666543
No 49
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=49.39 E-value=93 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.178 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 025240 119 SLKELQLLEQDLNEGLLLVKEK---KEKLLMEQLEQSRVQEQRAML 161 (255)
Q Consensus 119 s~~EL~~LE~~Le~~L~~VR~R---K~qll~~qi~~l~~ke~~l~~ 161 (255)
+..+|..|-++++.+-.-||++ |-.+|.+||..|+.+-+.+.+
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~t~~kL~~I~eQi~~Lq~QA~~ile 73 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRANTCNKLEVIAEQIRFLQEQARKILE 73 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888775 666788899988877655543
No 50
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.43 E-value=1.3e+02 Score=29.39 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=36.2
Q ss_pred hHHHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 89 DSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 89 ~~~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
+..++..|..+++.|..++ +.|++-|..++..+...-+...+-+..+++.|+.....++..=..|..
T Consensus 71 ~r~~~~~l~~~N~~l~~eN-------------~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 71 LRKRLAKLISENEALKAEN-------------ERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554 344444444444333333333344455666666655555555555666
Q ss_pred HHHHH
Q 025240 169 QVEEL 173 (255)
Q Consensus 169 ~~~~~ 173 (255)
++..+
T Consensus 138 ~l~~~ 142 (472)
T TIGR03752 138 RLAGV 142 (472)
T ss_pred HHhhc
Confidence 66543
No 51
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=48.26 E-value=1.1e+02 Score=23.24 Aligned_cols=46 Identities=28% Similarity=0.374 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 126 LEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 126 LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
++...+.++..+..|++.+ -..|+.+.++...+...=..++.++.+
T Consensus 61 v~~~~~e~~~~l~~r~e~i-e~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 61 VKTDKEEAIQELKEKKETL-ELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred heecHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666555 566666666666555554555555544
No 52
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.90 E-value=90 Score=22.30 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 141 KEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 141 K~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
|-+-..+.|..|+.+...|.++|..|...-.++
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 444455666666666666666666666554444
No 53
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=47.69 E-value=1.6e+02 Score=24.45 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 115 LNGLSLKELQLLEQDLNEGLLLVK--EKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 115 L~~Ls~~EL~~LE~~Le~~L~~VR--~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
...|++++...+-+.+........ ..-.+-+.+++..|+.+...|..||..|.+++..+..
T Consensus 77 ~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~e 139 (161)
T TIGR02894 77 AGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEE 139 (161)
T ss_pred cccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999988888876532222 1223445677888888888888888888888766554
No 54
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.25 E-value=1.6e+02 Score=29.64 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=9.9
Q ss_pred hHHHHHhhHHHHHHHHHHHh
Q 025240 89 DSKEVDGLKDEIAKLQMKQL 108 (255)
Q Consensus 89 ~~~e~~kLk~ei~~Lq~~~r 108 (255)
+..++..++.+|++|..++.
T Consensus 441 L~~~~ee~k~eie~L~~~l~ 460 (652)
T COG2433 441 LKRELEELKREIEKLESELE 460 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555443
No 55
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.99 E-value=3.4e+02 Score=27.92 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhCCCCC
Q 025240 161 LENETLRRQVEELRGFFPP 179 (255)
Q Consensus 161 ~eN~~Lr~~~~~~~~~~~~ 179 (255)
.|=..|+.+|+++-..+|.
T Consensus 643 ~ei~~lk~ki~~~~av~p~ 661 (697)
T PF09726_consen 643 KEIEELKAKIAQLLAVMPS 661 (697)
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 3445677788877765554
No 56
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=46.74 E-value=75 Score=24.10 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=36.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 114 DLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 114 ~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
....++.+++. ++.-......+++.|..+-..+..+|..|..+|.+.+
T Consensus 60 ~~~~l~P~~~i-------------~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 60 WRHSLTPEEDI-------------RAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred CCCCCChHHHH-------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778888773 3444445567788888898999999999999998764
No 57
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=45.85 E-value=2.5e+02 Score=28.96 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=9.4
Q ss_pred hHHHHHhhHHHHHHHHHHHhhh
Q 025240 89 DSKEVDGLKDEIAKLQMKQLRL 110 (255)
Q Consensus 89 ~~~e~~kLk~ei~~Lq~~~r~l 110 (255)
+...+..|..++..++..+-+.
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~ 53 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNV 53 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 58
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.57 E-value=86 Score=20.29 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 140 KKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 140 RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+-...|...-+.|+..-..|..||..|+.++..+..
T Consensus 5 ~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 5 RDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777888888888999999999999988765
No 59
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=43.50 E-value=1.2e+02 Score=29.27 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=38.6
Q ss_pred ccc-eeEEeccCCCc-ccchh---hc-------cchhhhhhH-hhhhccCCcEEEEEecCCCCccccccccccccccccc
Q 025240 4 GKI-EIKRIENANSR-QVTFS---KR-------RAGLLKKAQ-ELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYN 70 (255)
Q Consensus 4 ~Ki-~ikrIen~~~R-qvTFs---KR-------r~GL~KKA~-ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~ 70 (255)
+|+ .|.-|.+.+.| .|.|- || .++|+|+-. +-++-| -+++|.+.|++-.| ++.+||..|-
T Consensus 253 ~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~t~L~~s~~~----Nm~~~~~~g~p~~~---~l~~iL~~f~ 325 (445)
T cd00187 253 KKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKVTKLQTTFGI----NMVAFDPNGRPKKL---NLKEILQEFL 325 (445)
T ss_pred CCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHhcCCceeeee----eEEEEecCCeeEEe---CHHHHHHHHH
Confidence 344 46667676666 34332 22 235665431 222223 67888889999888 6888999887
Q ss_pred ccc
Q 025240 71 KCL 73 (255)
Q Consensus 71 ~~~ 73 (255)
.+.
T Consensus 326 ~~R 328 (445)
T cd00187 326 DHR 328 (445)
T ss_pred HHH
Confidence 664
No 60
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=43.12 E-value=4.5e+02 Score=28.17 Aligned_cols=52 Identities=27% Similarity=0.397 Sum_probs=34.6
Q ss_pred hhHHHHHhhHHHHHHHHHHHhhh------cCCCCCCCCHHHHHHHHHH---HHHHHHHHHH
Q 025240 88 QDSKEVDGLKDEIAKLQMKQLRL------LGKDLNGLSLKELQLLEQD---LNEGLLLVKE 139 (255)
Q Consensus 88 ~~~~e~~kLk~ei~~Lq~~~r~l------~Ge~L~~Ls~~EL~~LE~~---Le~~L~~VR~ 139 (255)
.++.++..++++++.|...+--+ .|-+-...|--++.+||.+ |-.+|-+.|+
T Consensus 329 sLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 329 SLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777777777777776553221 2556667777777777764 6667777765
No 61
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=42.96 E-value=49 Score=27.69 Aligned_cols=43 Identities=28% Similarity=0.355 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 025240 123 LQLLEQDLNEGLLLVKEKKEKLLMEQLE---QSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 123 L~~LE~~Le~~L~~VR~RK~qll~~qi~---~l~~ke~~l~~eN~~Lr~~~ 170 (255)
|..+|..+..++.+ +-+|..||+ .|+...++|.+|=..|+..+
T Consensus 2 LeD~EsklN~AIER-----nalLE~ELdEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIER-----NALLESELDEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888877754 345555553 23333344444444444443
No 62
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=42.24 E-value=90 Score=21.96 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 149 LEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 149 i~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
|+.|=..-..|..||..|+.++..
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444455555555555543
No 63
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.68 E-value=91 Score=22.23 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+..++..++.+...++.+|..|+.++..+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45567888888888999999999999987654
No 64
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=41.02 E-value=37 Score=22.08 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 139 EKKEKLLMEQLEQSRVQEQRAMLENETLRRQVE 171 (255)
Q Consensus 139 ~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~ 171 (255)
++.+..++-.|..|..+-..|..||..||.++-
T Consensus 13 aK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 13 AKRNSALSIKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -----------------HHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 455666777888888888899999999998864
No 65
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=40.45 E-value=3.9e+02 Score=26.70 Aligned_cols=16 Identities=13% Similarity=0.467 Sum_probs=10.7
Q ss_pred EEEEecC------CCCcccccc
Q 025240 44 AVIIFSN------TGKLFEFSS 59 (255)
Q Consensus 44 alIvfS~------~gkl~e~~s 59 (255)
|.|.|.. +|-.|.|+.
T Consensus 73 ~~V~F~ayyLPk~~~e~YqfcY 94 (546)
T PF07888_consen 73 CQVQFQAYYLPKDDDEFYQFCY 94 (546)
T ss_pred eEEEECcccCCCCCCCeEEEEE
Confidence 5677874 256688775
No 66
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=39.94 E-value=1.3e+02 Score=26.96 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 128 QDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 128 ~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
..=..++++=|.+..+.. ++++.+...|..||..||.+|+++..
T Consensus 200 ~rNN~A~~kSR~~~k~~~----~e~~~r~~~leken~~lr~~v~~l~~ 243 (269)
T KOG3119|consen 200 RRNNEAVRKSRDKRKQKE----DEMAHRVAELEKENEALRTQVEQLKK 243 (269)
T ss_pred HhhhHHHHHhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433332 56677888899999999999988765
No 67
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=39.88 E-value=98 Score=26.48 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 139 EKKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 139 ~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
.|+-+.-..+|..|+.--+.|+++|+.||.
T Consensus 47 NrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 47 NRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777777767777888887765
No 68
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=39.09 E-value=2.7e+02 Score=24.42 Aligned_cols=8 Identities=0% Similarity=0.331 Sum_probs=4.0
Q ss_pred cccccccc
Q 025240 57 FSSSGMKR 64 (255)
Q Consensus 57 ~~s~sm~~ 64 (255)
||..++..
T Consensus 13 ~C~~C~~~ 20 (302)
T PF10186_consen 13 YCANCVNN 20 (302)
T ss_pred ECHHHHHH
Confidence 55554443
No 69
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=39.08 E-value=2.4e+02 Score=23.85 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 128 QDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 128 ~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
..|+..+..++.+.+.+-...-+..+..++...+|-.+|++....+.
T Consensus 137 ~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~ 183 (189)
T PF10211_consen 137 EELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLK 183 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333334444455566666666655443
No 70
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=38.71 E-value=1.8e+02 Score=26.79 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|+.+|-.++.+.+.+.-||..|...+.....
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske 269 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHLQASKE 269 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4567888888999999999999999877554
No 71
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=37.59 E-value=1.1e+02 Score=22.53 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 143 KLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
..+..+++.++++...|.+||..|+-++..+..
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344567899999999999999999998877654
No 72
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=37.54 E-value=1.3e+02 Score=32.23 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 130 LNEGLLLVKEKKEKL-LMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 130 Le~~L~~VR~RK~ql-l~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
|+.-|.+.|+|-+.. +..+|-.++.|-..+..+|...|.|++++.
T Consensus 283 LeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~ 328 (1195)
T KOG4643|consen 283 LEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELH 328 (1195)
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444455555554332 223455555555566666666666666543
No 73
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=37.27 E-value=1.1e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 143 KLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|+..++.+-|+++-..+.++|..|..++.....
T Consensus 11 qFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~ 43 (96)
T PF11365_consen 11 QFVEEEAELLRRKLSELEDENKQLTEELNKYKS 43 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999999999999988765
No 74
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=36.53 E-value=3.4e+02 Score=26.45 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHHHhhhc
Q 025240 91 KEVDGLKDEIAKLQMKQLRLL 111 (255)
Q Consensus 91 ~e~~kLk~ei~~Lq~~~r~l~ 111 (255)
+.+..|++++++.+.++|..-
T Consensus 259 qsl~dlQk~Lekar~e~rnva 279 (575)
T KOG4403|consen 259 QSLEDLQKRLEKAREEQRNVA 279 (575)
T ss_pred HHHHHHHHHHHHHHHhhhchh
Confidence 344556666666666665543
No 75
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.39 E-value=2.8e+02 Score=27.75 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=33.8
Q ss_pred hhhHHHHHhh--HHHHHHHHHHHhhhcCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 87 KQDSKEVDGL--KDEIAKLQMKQLRLLGKDLNGLS-----LKELQLLEQDLNEGLLLVKEKKEKL 144 (255)
Q Consensus 87 ~~~~~e~~kL--k~ei~~Lq~~~r~l~Ge~L~~Ls-----~~EL~~LE~~Le~~L~~VR~RK~ql 144 (255)
+.|...+..| +.+++..++....+...++.+.. .+|+..|-..+..-...|+.-|+++
T Consensus 178 ~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l 242 (555)
T TIGR03545 178 QKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDL 242 (555)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677677777 67777777777777776555422 3344444444445555555555444
No 76
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.15 E-value=1.8e+02 Score=21.66 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
....|+.|+.+...+.+||..|+.++...
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777778888888888887643
No 77
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=35.65 E-value=56 Score=30.06 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 149 LEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 149 i~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
++.|++|-+.|.+||..||.....+..
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~ 188 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKT 188 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 588999999999999999999877653
No 78
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=35.58 E-value=70 Score=26.93 Aligned_cols=18 Identities=50% Similarity=0.639 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025240 122 ELQLLEQDLNEGLLLVKE 139 (255)
Q Consensus 122 EL~~LE~~Le~~L~~VR~ 139 (255)
||+.||.+|+..+..|++
T Consensus 160 ElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 160 ELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 788888888888777764
No 79
>smart00030 CLb CLUSTERIN Beta chain.
Probab=35.30 E-value=1.7e+02 Score=25.33 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=12.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 025240 115 LNGLSLKELQLLEQDLNEGLLLVKEKK 141 (255)
Q Consensus 115 L~~Ls~~EL~~LE~~Le~~L~~VR~RK 141 (255)
|..||..-=..+.++++++|.-|+.-|
T Consensus 9 Lk~lS~~G~kyvd~EI~nAl~GvKqMK 35 (206)
T smart00030 9 LQEMSTQGSKYINKEIKNALKGVKQIK 35 (206)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555544433
No 80
>PRK14127 cell division protein GpsB; Provisional
Probab=34.95 E-value=1.1e+02 Score=23.85 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 114 DLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 114 ~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+-|.+.+|-..+-.++- +.++.+.+.-..|.++|..|+.++.+...
T Consensus 19 ~~RGYd~~EVD~FLd~V~---------------~dye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 19 SMRGYDQDEVDKFLDDVI---------------KDYEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred CCCCCCHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777655433332 34556666667788888889999888776
No 81
>COG0139 HisI Phosphoribosyl-AMP cyclohydrolase [Amino acid transport and metabolism]
Probab=34.79 E-value=14 Score=28.86 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=29.2
Q ss_pred CCcccchhhccchhhh---------hhHhhhhccCCcEEEEEecCCCC
Q 025240 15 NSRQVTFSKRRAGLLK---------KAQELAILCDAEVAVIIFSNTGK 53 (255)
Q Consensus 15 ~~RqvTFsKRr~GL~K---------KA~ELSvLCdaeValIvfS~~gk 53 (255)
+.+...||+-|+-|-+ |..|+.+-||.|+-+|+..+.|.
T Consensus 48 Tg~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~Dall~~V~q~gg 95 (111)
T COG0139 48 TGEAHYYSRSRQELWTKGETSGHTQKVVEIRLDCDGDALLLLVEQIGG 95 (111)
T ss_pred cCeEEEEEcchhhheccccccCceEEEEEEEcCCCCCEEEEEEEeCCC
Confidence 3445556666665555 46799999999999999999653
No 82
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=34.65 E-value=3.1e+02 Score=26.85 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+|..+...++.|...+..||..|+.+++....
T Consensus 94 ~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 94 VLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34455556667777889999999999965443
No 83
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=33.69 E-value=3.2e+02 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 025240 158 RAMLENETLRRQVEEL 173 (255)
Q Consensus 158 ~l~~eN~~Lr~~~~~~ 173 (255)
.|.+-|..|+.+++-+
T Consensus 239 fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 239 FLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 4456778888887643
No 84
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=33.68 E-value=2.5e+02 Score=22.52 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 119 SLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQ 169 (255)
Q Consensus 119 s~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~ 169 (255)
.+.|++.+-...|..+.+..+.-... -.+|..|+.+-..+...|..|.++
T Consensus 81 ~~~e~qsli~~yE~~~~kLe~e~~~K-dsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 81 EIQEQQSLIKTYEIVVKKLEAELRAK-DSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 36788888777777777655444333 457788888888888888877665
No 85
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.45 E-value=1.3e+02 Score=27.57 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 115 LNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLE 162 (255)
Q Consensus 115 L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~e 162 (255)
-++||.+|-.. |-+||.||.+|+ ++|+.|+.......+|
T Consensus 8 p~~Ls~~E~~e--------L~~ir~rk~qL~-deIq~Lk~Ei~ev~~e 46 (395)
T KOG0930|consen 8 PNDLSEEERME--------LENIRRRKQELL-DEIQRLKDEIAEVMEE 46 (395)
T ss_pred CCCCCHHHHHh--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35677776654 557899998885 7888887765555543
No 86
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=32.13 E-value=3.3e+02 Score=24.48 Aligned_cols=37 Identities=22% Similarity=0.277 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 139 EKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 139 ~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+.++.|..+|..-+.-...+.++...|+..|+.+..
T Consensus 185 ~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 185 TLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777776666666777888888888888765
No 87
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=31.82 E-value=1.6e+02 Score=28.58 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 025240 116 NGLSLKELQLLEQDLNEGLLLVK 138 (255)
Q Consensus 116 ~~Ls~~EL~~LE~~Le~~L~~VR 138 (255)
..||...-+.+.+.++++|..|+
T Consensus 4 k~lS~~GekyvdeEik~Al~GvK 26 (436)
T PF01093_consen 4 KELSEQGEKYVDEEIKNALNGVK 26 (436)
T ss_pred HHHhHhCchhHHHHHHHHHHHHH
Confidence 33343444444444444444443
No 88
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=30.76 E-value=36 Score=30.16 Aligned_cols=38 Identities=29% Similarity=0.525 Sum_probs=28.4
Q ss_pred hhhccchhhhhhHhhhhccC---CcEEEEEecCCCCcccccc
Q 025240 21 FSKRRAGLLKKAQELAILCD---AEVAVIIFSNTGKLFEFSS 59 (255)
Q Consensus 21 FsKRr~GL~KKA~ELSvLCd---aeValIvfS~~gkl~e~~s 59 (255)
|.+-+.|++||.. +..||. +=|+-|.||+.++.+-||.
T Consensus 120 ~~~~~~~~~~~~~-~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 120 YRREKGGFLKKIK-FNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhccCchhhhhH-HHHHhhhhhhhEEEeeccccCCceeeee
Confidence 3444788888874 678884 5566778999999988875
No 89
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=30.62 E-value=1.4e+02 Score=27.90 Aligned_cols=41 Identities=29% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 113 KDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLR 167 (255)
Q Consensus 113 e~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr 167 (255)
.+|++.|++|+-.|-.. +..|..|++.|+.+...| ||..|+
T Consensus 24 ~~~~~~~~~e~~aLr~E------------N~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 24 HELEGVSIDENFALRME------------NHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred ccccccchhhhhhHHHH------------hHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 45777777777655322 333455666666665555 444444
No 90
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=30.20 E-value=4.9e+02 Score=25.99 Aligned_cols=79 Identities=22% Similarity=0.337 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhhcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 97 KDEIAKLQMKQLRLLGK-DLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 97 k~ei~~Lq~~~r~l~Ge-~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.++++.+....-.+.+. +......-+|+.--..++.+|..|-+...++ .+.+..|++-|....+.=.+++.++.++.+
T Consensus 353 e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~-~e~L~~LrkdEl~Are~l~~~~~~l~eikR 431 (570)
T COG4477 353 EKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKV-QEHLTSLRKDELEARENLERLKSKLHEIKR 431 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333332 3455667788888888888888886665554 788999999999999988999999999876
Q ss_pred C
Q 025240 176 F 176 (255)
Q Consensus 176 ~ 176 (255)
.
T Consensus 432 ~ 432 (570)
T COG4477 432 Y 432 (570)
T ss_pred H
Confidence 4
No 91
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=30.10 E-value=34 Score=26.58 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=20.5
Q ss_pred hHhhhhccCCcEEEEEecCCCCcccccc
Q 025240 32 AQELAILCDAEVAVIIFSNTGKLFEFSS 59 (255)
Q Consensus 32 A~ELSvLCdaeValIvfS~~gkl~e~~s 59 (255)
-.+|..|-+| +|+..||++|++.+|-.
T Consensus 3 l~~Lm~lpGv-~AAg~Fs~~G~l~e~~G 29 (108)
T PF09941_consen 3 LDKLMKLPGV-VAAGEFSDDGKLVEYKG 29 (108)
T ss_pred HHHhhcCCCe-EEEEEECCCCeEEeeec
Confidence 3566677776 56688999999998854
No 92
>PF01502 PRA-CH: Phosphoribosyl-AMP cyclohydrolase; InterPro: IPR002496 Phosphoribosyl-AMP cyclohydrolase 3.5.4.19 from EC catalyses the third step in the histidine biosynthetic pathway: 5-phosphoribosyl-AMP + H2O = 5-(5-phospho-D-ribosylaminoformimino)-1-(5-phospho-ribosyl) imidazole-4-carboxamide It requires Zn2+ ions for activity [].; GO: 0004635 phosphoribosyl-AMP cyclohydrolase activity, 0000105 histidine biosynthetic process; PDB: 1ZPS_B.
Probab=29.99 E-value=10 Score=27.52 Aligned_cols=38 Identities=24% Similarity=0.480 Sum_probs=28.6
Q ss_pred Ccccchhhccchhhhh---------hHhhhhccCCcEEEEEecCCCC
Q 025240 16 SRQVTFSKRRAGLLKK---------AQELAILCDAEVAVIIFSNTGK 53 (255)
Q Consensus 16 ~RqvTFsKRr~GL~KK---------A~ELSvLCdaeValIvfS~~gk 53 (255)
.+-+-||+-|++|-.| ..|+.+-||.|.-|+..-|.|.
T Consensus 17 g~~~y~SRSR~~lW~KGetSG~~q~v~~i~~DCD~D~ll~~V~~~G~ 63 (75)
T PF01502_consen 17 GRATYYSRSRNRLWRKGETSGNTQKVVEIRLDCDGDALLFKVEQVGP 63 (75)
T ss_dssp SB-EEEETTTTEEEETTTTTS--EEEEEEEE-TTSSEEEEEEEESS-
T ss_pred CcEEEEEccCCcEeeEECCCCCEEEEEEEEecCCCCeEEEEEEeCCC
Confidence 4556678888777555 5789999999999999999887
No 93
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=29.87 E-value=2.1e+02 Score=21.78 Aligned_cols=42 Identities=21% Similarity=0.235 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNE-------GLLLVKEKKEKLLMEQLEQSRVQEQR 158 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~-------~L~~VR~RK~qll~~qi~~l~~ke~~ 158 (255)
|++++|+..+-...+. .+..+-..+.+.+.++|..++.....
T Consensus 56 G~sl~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~ 104 (116)
T cd04769 56 GFTLAELKAIFAGHEGRAVLPWPHLQQALEDKKQEIRAQITELQQLLAR 104 (116)
T ss_pred CCCHHHHHHHHhccccCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777776554432 23334444444445555555444433
No 94
>smart00338 BRLZ basic region leucin zipper.
Probab=29.86 E-value=1.8e+02 Score=19.72 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
.|..+...|+.+...|..++..|+.++
T Consensus 37 ~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 37 QLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566677777777777777777665
No 95
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=29.82 E-value=3.2e+02 Score=26.65 Aligned_cols=51 Identities=12% Similarity=-0.002 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 116 NGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 116 ~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
+..++.++.++-..+...+..++.++.++ ..+...+.++=..|+.++..+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 122 NEPDLKEWFQAFDFNGSEIERLLTEDREA--------ERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhc
Confidence 35688888888888888887777666543 3333344444445556665554
No 96
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=29.72 E-value=1.5e+02 Score=22.98 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
+.++|..|+++-..|..||..|++-++=
T Consensus 76 ~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 76 AMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888999999999887754
No 97
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=29.65 E-value=4.6e+02 Score=24.31 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHh
Q 025240 123 LQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQR---------------------AMLENETLRRQVEELR 174 (255)
Q Consensus 123 L~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~---------------------l~~eN~~Lr~~~~~~~ 174 (255)
+..--.+|+.-+..+-+-|.++.. +-+.++.|... |..||++|+.+|....
T Consensus 138 ~~~q~~qLe~d~qs~lDEkeEl~~-ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~q 209 (319)
T PF09789_consen 138 LREQIEQLERDLQSLLDEKEELVT-ERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 333334566666667777777754 34444554333 4558999999886543
No 98
>PF14282 FlxA: FlxA-like protein
Probab=28.89 E-value=2.6e+02 Score=21.25 Aligned_cols=52 Identities=21% Similarity=0.318 Sum_probs=34.8
Q ss_pred HHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 91 KEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRA 159 (255)
Q Consensus 91 ~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l 159 (255)
..+..|.++|..|+..+..+... .+++.++- ..|.++|..+|..|+.+...+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k---------------~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQD--SDLDAEQK---------------QQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999888776653 34455544 356667777777776655443
No 99
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.51 E-value=5.3e+02 Score=25.76 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025240 157 QRAMLENETLRRQVEEL 173 (255)
Q Consensus 157 ~~l~~eN~~Lr~~~~~~ 173 (255)
..|..||.+|+..|..+
T Consensus 172 ~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 172 KRLKAENSRLREELARA 188 (546)
T ss_pred HHHHHHhhhhHHHHHHH
Confidence 33444444444444443
No 100
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=28.22 E-value=5.1e+02 Score=26.87 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 139 EKKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 139 ~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
+|+++.|..+|..|+++-+....-|..|-+
T Consensus 604 arrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 604 ARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666655444444444433
No 101
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=28.07 E-value=2.7e+02 Score=21.07 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQ 169 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~ 169 (255)
|+|++|+..+-.....+-..+ ..-..++.+++..+..+...|...=..|..+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~-~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~ 108 (113)
T cd01109 57 GMSIKDIKEYAELRREGDSTI-PERLELLEEHREELEEQIAELQETLAYLDYK 108 (113)
T ss_pred CCCHHHHHHHHHHHccCCccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888887654332211111 1123444555555554444444333333333
No 102
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=28.00 E-value=32 Score=30.02 Aligned_cols=19 Identities=32% Similarity=0.698 Sum_probs=15.6
Q ss_pred CcEEEEEecCCCCccc--ccc
Q 025240 41 AEVAVIIFSNTGKLFE--FSS 59 (255)
Q Consensus 41 aeValIvfS~~gkl~e--~~s 59 (255)
-|-||-||||+|.||. |+.
T Consensus 4 ydraltvFSPDGhL~QVEYAq 24 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQVEYAQ 24 (249)
T ss_pred cccceEEECCCCCEEeeHhHH
Confidence 3668999999999986 664
No 103
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.70 E-value=3.9e+02 Score=22.90 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=21.9
Q ss_pred hhHHHHHhhHHHHHHHHHHHhh--hcCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 025240 88 QDSKEVDGLKDEIAKLQMKQLR--LLGKDLNGLSLKELQLLEQDLNEGLLLV 137 (255)
Q Consensus 88 ~~~~e~~kLk~ei~~Lq~~~r~--l~Ge~L~~Ls~~EL~~LE~~Le~~L~~V 137 (255)
.+..++..|++++..++..... .+.++ +++|..+-..|+..=+.+
T Consensus 40 ~L~~e~~~L~~q~~s~Qqal~~aK~l~eE-----ledLk~~~~~lEE~~~~L 86 (193)
T PF14662_consen 40 QLAEEITDLRKQLKSLQQALQKAKALEEE-----LEDLKTLAKSLEEENRSL 86 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 4445566666666666544322 23333 344554444444443333
No 104
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=27.55 E-value=4.4e+02 Score=23.38 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.7
Q ss_pred CCcEEEEEecCC
Q 025240 40 DAEVAVIIFSNT 51 (255)
Q Consensus 40 daeValIvfS~~ 51 (255)
-|||-+||-+..
T Consensus 6 pVDVRIiVEGAs 17 (290)
T COG4026 6 PVDVRIIVEGAS 17 (290)
T ss_pred cceEEEEeeccc
Confidence 467777776654
No 105
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=27.46 E-value=3.2e+02 Score=21.76 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025240 122 ELQLLEQDLNEGLLLVKEKKEKL 144 (255)
Q Consensus 122 EL~~LE~~Le~~L~~VR~RK~ql 144 (255)
-|..|...|+.........++++
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV 91 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEV 91 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444544444444444443
No 106
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=27.10 E-value=20 Score=27.56 Aligned_cols=25 Identities=36% Similarity=0.652 Sum_probs=19.2
Q ss_pred ccceeEEe-ccCCCcccchhhccchh
Q 025240 4 GKIEIKRI-ENANSRQVTFSKRRAGL 28 (255)
Q Consensus 4 ~Ki~ikrI-en~~~RqvTFsKRr~GL 28 (255)
.+|++|-+ +|..+=.|+|.||..|+
T Consensus 18 ~~ie~K~~~~~RSN~~i~f~KRt~Gi 43 (103)
T PF09158_consen 18 DKIEVKEIVIDRSNYEIRFKKRTKGI 43 (103)
T ss_dssp HT--EEEEEEETTEEEEEEEEEETTE
T ss_pred cceeeeeeEeeccceEEeeecccCce
Confidence 35788877 78888899999999994
No 107
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=26.94 E-value=2e+02 Score=21.08 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 148 QLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 148 qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.|+..+..-..|..||.+|..=|..+-.
T Consensus 38 Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 38 RVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445688999999999877643
No 108
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=26.68 E-value=2e+02 Score=19.15 Aligned_cols=11 Identities=45% Similarity=0.676 Sum_probs=6.9
Q ss_pred CCCHHHHHHHH
Q 025240 117 GLSLKELQLLE 127 (255)
Q Consensus 117 ~Ls~~EL~~LE 127 (255)
|+|++|+.++-
T Consensus 14 GfsL~eI~~~l 24 (65)
T PF09278_consen 14 GFSLEEIRELL 24 (65)
T ss_dssp T--HHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 67888888776
No 109
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=25.58 E-value=5.7e+02 Score=24.04 Aligned_cols=45 Identities=24% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 128 QDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 128 ~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
++||..+.+.++++.++ .-+++.+.+.-.+..+|+..|-+.+.|.
T Consensus 130 q~LE~li~~~~EEn~~l-qlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCL-QLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHHHHHHHHHHHHHHH-HHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 34555555666555444 3455555555555556666665555553
No 110
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=25.56 E-value=36 Score=29.89 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=18.8
Q ss_pred hhccCCcEEEEEecCCCCccc--ccc
Q 025240 36 AILCDAEVAVIIFSNTGKLFE--FSS 59 (255)
Q Consensus 36 SvLCdaeValIvfS~~gkl~e--~~s 59 (255)
||=.+-|.|.-+|||+|++|+ |+.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQveYA~ 28 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQVEYAQ 28 (254)
T ss_pred cccccccccceeeCCCCceehHHHHH
Confidence 344567888999999999987 653
No 111
>PRK11637 AmiB activator; Provisional
Probab=25.52 E-value=5.8e+02 Score=24.13 Aligned_cols=78 Identities=12% Similarity=0.179 Sum_probs=0.0
Q ss_pred hhhHHHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 87 KQDSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLV--KEKKEKLLMEQLEQSRVQEQRAMLENE 164 (255)
Q Consensus 87 ~~~~~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~V--R~RK~qll~~qi~~l~~ke~~l~~eN~ 164 (255)
.....++..+.+++..++..+..+..+ |..|+.+|...-..| ..+.-..+..+|+.++.+...++.+=.
T Consensus 50 ~~l~~qi~~~~~~i~~~~~~~~~~~~~---------l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 50 KSIQQDIAAKEKSVRQQQQQRASLLAQ---------LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 025240 165 TLRRQVEEL 173 (255)
Q Consensus 165 ~Lr~~~~~~ 173 (255)
.++..+...
T Consensus 121 ~~~~~l~~r 129 (428)
T PRK11637 121 AQERLLAAQ 129 (428)
T ss_pred HHHHHHHHH
No 112
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=24.90 E-value=3.6e+02 Score=21.49 Aligned_cols=55 Identities=24% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 121 KELQLLEQDLNEGLLLVKEKKEKL------LMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 121 ~EL~~LE~~Le~~L~~VR~RK~ql------l~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
++|+...-.....+..+|.|=.+| ++..++.++.+..-+..+...|+.+++.+..
T Consensus 61 ~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~ 121 (141)
T PF13874_consen 61 EELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEA 121 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 344444444445555565555555 3445566666666666777777777777665
No 113
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=24.88 E-value=42 Score=25.58 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=20.6
Q ss_pred hhHhhhhccCCcEEEEEecCCCCcccccc
Q 025240 31 KAQELAILCDAEVAVIIFSNTGKLFEFSS 59 (255)
Q Consensus 31 KA~ELSvLCdaeValIvfS~~gkl~e~~s 59 (255)
|-.||--+-+| +|.=.|||+|||.+|-+
T Consensus 4 kLdeLlqi~Gv-~AAGefs~DGkLv~Ykg 31 (109)
T COG4831 4 KLDELLQIKGV-MAAGEFSPDGKLVEYKG 31 (109)
T ss_pred hHHHHhCccce-eEeceeCCCCceEEeeC
Confidence 45566655555 55668999999999966
No 114
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.54 E-value=2.8e+02 Score=20.85 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 116 NGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAM 160 (255)
Q Consensus 116 ~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~ 160 (255)
-|+++.|+..+-..... +....++..+++.+..+-..++
T Consensus 57 ~G~sl~~i~~l~~~~~~------~~~~~~l~~~~~~l~~~i~~l~ 95 (108)
T cd01107 57 LGFPLEEIKEILDADND------DELRKLLREKLAELEAEIEELQ 95 (108)
T ss_pred cCCCHHHHHHHHhcCCH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888877655442 3334444444444444444443
No 115
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.51 E-value=3.1e+02 Score=22.87 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 025240 148 QLEQSRVQEQRAML 161 (255)
Q Consensus 148 qi~~l~~ke~~l~~ 161 (255)
+++.|+++-..+.+
T Consensus 176 ~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 176 EIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555444443
No 116
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=24.36 E-value=8.5e+02 Score=26.92 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKL------LMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~ql------l~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
.++++|+.--..++..+..++...+.+ +..+|..|+.+...+..+...|..
T Consensus 822 ~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~ 878 (1311)
T TIGR00606 822 RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777776666666666663332222 234566665555444444444433
No 117
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.25 E-value=5.7e+02 Score=23.60 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025240 151 QSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 151 ~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
.+-..++.+.+||.+|+.++..
T Consensus 258 ~~~~eek~ireEN~rLqr~L~~ 279 (310)
T PF09755_consen 258 QYLQEEKEIREENRRLQRKLQR 279 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999753
No 118
>TIGR02051 MerR Hg(II)-responsive transcriptional regulator. This model represents the mercury (II) responsive transcriptional activator of the mer organomercurial resistance operon. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(8)-Cys-Pro, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.92 E-value=3.1e+02 Score=21.19 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVE 171 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~ 171 (255)
|++++|+..+-...+. ..+ ..-..++.++++.++.+...|..-...|...+.
T Consensus 56 G~sl~eI~~~l~~~~~--~~~-~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 107 (124)
T TIGR02051 56 GFSLEEIGGLLGLVDG--THC-REMYELASRKLKSVQAKMADLLRIERLLEELLE 107 (124)
T ss_pred CCCHHHHHHHHhcccC--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888776543321 111 112245555566666665555544445555443
No 119
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=23.76 E-value=2.2e+02 Score=23.92 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=32.1
Q ss_pred ccCCcEEEEEecCCCCc------cccccccccccccccccccccc-hhhHHhhhhhhhhHHHHHhhHHHHHHHHHH
Q 025240 38 LCDAEVAVIIFSNTGKL------FEFSSSGMKRTLSRYNKCLDFS-EVAVAEYKTEKQDSKEVDGLKDEIAKLQMK 106 (255)
Q Consensus 38 LCdaeValIvfS~~gkl------~e~~s~sm~~ileRY~~~~~~~-~~~~~~~~~e~~~~~e~~kLk~ei~~Lq~~ 106 (255)
.-||..|+|||-|+-.+ ..|-..+--.+.++..-.+-.. ......... ..+..++++++++.+.-+..
T Consensus 10 ~~~~k~C~IC~KpsttVL~t~~~~DfFY~C~~HL~D~~F~~p~~~~~~~~~~~k~-~el~~eiekvkke~Eekq~~ 84 (182)
T PF08432_consen 10 ETDAKACFICYKPSTTVLITPDNKDFFYVCPSHLKDRQFATPIYDEEYVEAKKKK-KELEEEIEKVKKEYEEKQKW 84 (182)
T ss_pred cCCCCceeEecCCCceEEecCCCCCeEEeCcccccCcccCCCCCCHHHHHHHhhH-HHHHHHHHHHHHHHHHHhHH
Confidence 35789999999986322 2232233334445533222111 111111011 24455666666666655544
No 120
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=23.54 E-value=3.6e+02 Score=21.01 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 146 MEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 146 ~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
..||..|+..-..+.+||..|+-.-+.++.
T Consensus 21 ~~el~~lK~~l~~lvEEN~~L~lENe~LR~ 50 (114)
T COG4467 21 LAELGGLKQHLGSLVEENTALRLENEKLRE 50 (114)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 578999999999999999999998888775
No 121
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=23.39 E-value=2.6e+02 Score=28.33 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=10.5
Q ss_pred hhHHHHHhhHHHHHHHHHH
Q 025240 88 QDSKEVDGLKDEIAKLQMK 106 (255)
Q Consensus 88 ~~~~e~~kLk~ei~~Lq~~ 106 (255)
.++.++..|+++++.|...
T Consensus 84 ~Lq~E~~~L~kElE~L~~q 102 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQ 102 (617)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555566666555543
No 122
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=23.29 E-value=43 Score=31.90 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=39.1
Q ss_pred eEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccc
Q 025240 8 IKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSS 60 (255)
Q Consensus 8 ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~ 60 (255)
|+++-+...-..||..|+.| ||+++||..+-+.||-..--...|+++
T Consensus 18 i~~~~d~~~ps~~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~ 64 (412)
T COG5068 18 IQGDSDANIPSNTINRLSPG------ELSQQNDGKFDVMIFDSKHSVRVYSNE 64 (412)
T ss_pred cccccccCCccccccccCcc------cchhhccCCcccccccccccccccCCc
Confidence 78888888888999999999 999999998888888666556666664
No 123
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.23 E-value=3.3e+02 Score=20.41 Aligned_cols=40 Identities=15% Similarity=0.194 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 133 GLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 133 ~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
+...+..+++.+ -..|+.+..+...+..+=..|+.+|.++
T Consensus 64 a~~~Le~~~e~l-e~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETI-ELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333332 4455555566655665555666666554
No 124
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=23.02 E-value=1.8e+02 Score=25.71 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 025240 146 MEQLEQSRVQEQ---RAMLENETLRRQVEE 172 (255)
Q Consensus 146 ~~qi~~l~~ke~---~l~~eN~~Lr~~~~~ 172 (255)
.+|+..|+.+.. .+.+||..|++.+.-
T Consensus 82 ~~e~~~l~~~~~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 82 KKELLELESRLQELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444333 567899999987654
No 125
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.97 E-value=1e+02 Score=17.16 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=10.6
Q ss_pred HHHhhHHHHHHHHHHH
Q 025240 92 EVDGLKDEIAKLQMKQ 107 (255)
Q Consensus 92 e~~kLk~ei~~Lq~~~ 107 (255)
|+..++.+|..|++++
T Consensus 2 E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 2 EMNRLRNRISDLERQL 17 (23)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4566777777776654
No 126
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=22.80 E-value=2.9e+02 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 146 MEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 146 ~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
.++|..++.+...|..+|..|+++...
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~ 136 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAI 136 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666543
No 127
>TIGR01950 SoxR redox-sensitive transcriptional activator SoxR. SoxR is a MerR-family homodimeric transcription factor with a 2Fe-2S cluster in each monomer. The motif CIGCGCxxxxxC is conserved. Oxidation of the iron-sulfur cluster activates SoxR. The physiological role in E. coli is response to oxidative stress. It is activated by superoxide, singlet oxygen, nitric oxide (NO), and hydrogen peroxide. In E. coli, SoxR increases expression of transcription factor SoxS; different downstream targets may exist in other species.
Probab=22.67 E-value=2.9e+02 Score=22.17 Aligned_cols=54 Identities=15% Similarity=0.084 Sum_probs=26.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
+++++|+..+-..+...-.........++.+++..+..+-..|..--..|...+
T Consensus 57 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ki~~L~~~~~~L~~~~ 110 (142)
T TIGR01950 57 GIPLATIGEALAVLPEGRTPTADDWARLSSQWREELDERIDQLNALRDQLDGCI 110 (142)
T ss_pred CCCHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588888888776543221111122223444555555555555544334444444
No 128
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=22.40 E-value=3.7e+02 Score=26.87 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=16.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHhh
Q 025240 88 QDSKEVDGLKDEIAKLQMKQLR 109 (255)
Q Consensus 88 ~~~~e~~kLk~ei~~Lq~~~r~ 109 (255)
.....+.+|+.+++.++...+.
T Consensus 457 ~l~a~t~kL~~E~e~~q~~~~~ 478 (588)
T KOG3612|consen 457 SLVAATEKLRQEFEELQQTSRR 478 (588)
T ss_pred chHHHHHHHHHHHHHHHHHHhh
Confidence 4556688888888888877654
No 129
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=21.89 E-value=5.1e+02 Score=22.21 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
.+++.++++-..|..+|..|+.+|.+
T Consensus 116 ~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 116 AERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555555555555555543
No 130
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=21.61 E-value=3.8e+02 Score=20.64 Aligned_cols=55 Identities=20% Similarity=0.171 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
|++++|+..+-.....+-. ....-..++.+++..+..+-..|..-...|...+..
T Consensus 57 G~sL~eI~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~ 111 (127)
T cd04784 57 DMSLDEIRTLLQLQDDPEA-SCAEVNALIDEHLAHVRARIAELQALEKQLQALRER 111 (127)
T ss_pred CCCHHHHHHHHHhhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889998887553322100 011223455555555555555555444445444433
No 131
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=21.60 E-value=2.9e+02 Score=22.86 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
|++++|+..+-..-.... ..++.+++..+..+-..|...-..|...+
T Consensus 58 G~sL~eI~~ll~~~~~~~-------~~~L~~~~~~l~~ei~~L~~~~~~l~~ll 104 (172)
T cd04790 58 GVSLEDIRSLLQQPGDDA-------TDVLRRRLAELNREIQRLRQQQRAIATLL 104 (172)
T ss_pred CCCHHHHHHHHhcCChhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888777654333222 23444444444444444444334444444
No 132
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=21.56 E-value=6.5e+02 Score=23.31 Aligned_cols=45 Identities=27% Similarity=0.279 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 130 LNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 130 Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|-.-|...|.+-.. +..+++.|+.+-..++.+|+.||.+++..+.
T Consensus 70 La~lL~~sre~Nk~-L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 70 LAQLLSESREQNKK-LKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 33445555655444 4788999999999999999999999988654
No 133
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=21.08 E-value=4.8e+02 Score=21.55 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 025240 165 TLRRQVEEL 173 (255)
Q Consensus 165 ~Lr~~~~~~ 173 (255)
.+..++.++
T Consensus 124 ~~~~ki~e~ 132 (177)
T PF07798_consen 124 KQELKIQEL 132 (177)
T ss_pred HHHHHHHHH
Confidence 333344443
No 134
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=21.08 E-value=1.4e+02 Score=28.21 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 121 KELQLLEQDLNEGLLLVKEKKEKLLMEQLE 150 (255)
Q Consensus 121 ~EL~~LE~~Le~~L~~VR~RK~qll~~qi~ 150 (255)
.|..+||++|-.++.-+-++|.++.+.+++
T Consensus 186 ~di~~lErrL~qtmdmiisKKkk~a~~~l~ 215 (462)
T KOG2417|consen 186 TDIIQLERRLAQTMDMIISKKKKMAMAQLE 215 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588899999999999999999999988864
No 135
>PRK09514 zntR zinc-responsive transcriptional regulator; Provisional
Probab=20.55 E-value=3.8e+02 Score=21.30 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVE 171 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~ 171 (255)
+++++|+..+-......-..--.....++.++++.+..+...|..--..|...+.
T Consensus 58 G~sL~eI~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~ 112 (140)
T PRK09514 58 GFTLEEIRELLSIRLDPEHHTCQEVKGIVDEKLAEVEAKIAELQHMRRSLQRLND 112 (140)
T ss_pred CCCHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888776543211000011222345555666666555555544444444443
No 136
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.54 E-value=3.9e+02 Score=20.34 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
|++++|+..+-.....+-. .-....+++.++++.+..+...|..--..|...+
T Consensus 57 G~sl~eI~~~l~~~~~~~~-~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (123)
T cd04770 57 GFSLAEIRELLSLRDDGAA-PCAEVRALLEEKLAEVEAKIAELQALRAELAGLL 109 (123)
T ss_pred CCCHHHHHHHHHhhhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888876654432100 0112234445555555555444444444444444
No 137
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=20.10 E-value=2.3e+02 Score=18.84 Aligned_cols=18 Identities=39% Similarity=0.311 Sum_probs=11.4
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 025240 115 LNGLSLKELQLLEQDLNE 132 (255)
Q Consensus 115 L~~Ls~~EL~~LE~~Le~ 132 (255)
|..+|++||++.-..|+.
T Consensus 5 Lk~ls~~eL~~rl~~LD~ 22 (49)
T PF11629_consen 5 LKFLSYEELQQRLASLDP 22 (49)
T ss_dssp GGGS-HHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhCCH
Confidence 567888888875555543
No 138
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=20.08 E-value=3.7e+02 Score=19.87 Aligned_cols=15 Identities=47% Similarity=0.647 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHHHH
Q 025240 117 GLSLKELQLLEQDLN 131 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le 131 (255)
+++++++..+-....
T Consensus 57 g~~l~~i~~~~~~~~ 71 (103)
T cd01106 57 GFSLKEIKELLKDPS 71 (103)
T ss_pred CCCHHHHHHHHHcCc
Confidence 788999888766553
Done!