Query 025240
Match_columns 255
No_of_seqs 243 out of 1605
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 06:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025240.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025240hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.8E-39 9.5E-44 234.6 0.3 72 2-73 1-72 (77)
2 3p57_A Myocyte-specific enhanc 100.0 1.7E-38 6E-43 236.0 0.6 74 2-75 1-74 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 4.4E-37 1.5E-41 232.2 0.9 71 1-71 16-86 (100)
4 1hbx_A SRF, serum response fac 100.0 6.5E-37 2.2E-41 228.4 1.6 70 1-70 10-79 (92)
5 1k6o_B SRF, serum response fac 100.0 2.5E-36 8.5E-41 229.5 1.9 69 1-69 9-77 (103)
6 2jee_A YIIU; FTSZ, septum, coi 89.7 2.9 0.0001 29.7 8.7 43 118-165 3-45 (81)
7 2w6a_A ARF GTPase-activating p 89.4 2.4 8.1E-05 28.3 7.5 53 116-168 8-62 (63)
8 1gd2_E Transcription factor PA 83.2 3.7 0.00013 28.4 6.2 42 133-174 19-63 (70)
9 1dip_A Delta-sleep-inducing pe 80.3 2.6 9E-05 29.3 4.5 28 143-170 18-45 (78)
10 1dh3_A Transcription factor CR 79.0 11 0.00037 24.6 7.1 36 136-175 15-50 (55)
11 1j1d_C Troponin I, TNI; THIN f 78.4 16 0.00055 28.3 9.0 73 95-175 30-107 (133)
12 3s9g_A Protein hexim1; cyclin 77.2 7.6 0.00026 28.5 6.4 29 146-174 64-92 (104)
13 2dgc_A Protein (GCN4); basic d 77.0 8.6 0.0003 25.8 6.3 39 133-175 20-58 (63)
14 3nmd_A CGMP dependent protein 74.5 19 0.00063 24.9 8.3 54 115-175 15-68 (72)
15 2dfs_A Myosin-5A; myosin-V, in 72.5 27 0.00094 36.0 11.6 26 150-175 1019-1044(1080)
16 1ci6_A Transcription factor AT 68.1 20 0.00069 23.8 6.5 29 147-175 23-51 (63)
17 2wt7_A Proto-oncogene protein 67.5 19 0.00066 23.8 6.3 37 135-175 15-51 (63)
18 1t2k_D Cyclic-AMP-dependent tr 66.2 22 0.00074 23.3 6.3 37 135-175 14-50 (61)
19 1j1e_C Troponin I, TNI; THIN f 65.6 29 0.00099 28.2 8.1 51 95-145 30-85 (180)
20 3hnw_A Uncharacterized protein 64.1 48 0.0016 25.6 9.1 15 91-105 68-82 (138)
21 1jnm_A Proto-oncogene C-JUN; B 62.7 27 0.00093 23.0 6.3 37 135-175 14-50 (62)
22 2yy0_A C-MYC-binding protein; 61.8 14 0.00046 24.0 4.5 28 144-171 23-50 (53)
23 2oqq_A Transcription factor HY 60.7 26 0.0009 21.5 5.7 23 149-171 19-41 (42)
24 3oja_B Anopheles plasmodium-re 59.8 90 0.0031 29.1 11.8 29 147-175 551-579 (597)
25 1hjb_A Ccaat/enhancer binding 57.0 40 0.0014 24.1 6.7 25 151-175 40-64 (87)
26 1p9i_A Cortexillin I/GCN4 hybr 55.1 15 0.00051 20.4 3.2 18 157-174 9-26 (31)
27 1gu4_A CAAT/enhancer binding p 53.3 52 0.0018 22.9 6.7 26 150-175 39-64 (78)
28 1ytz_T Troponin T; muscle, THI 52.0 31 0.0011 25.6 5.6 52 114-173 38-89 (107)
29 1go4_E MAD1 (mitotic arrest de 51.9 22 0.00076 26.1 4.7 29 147-175 12-40 (100)
30 3gp4_A Transcriptional regulat 49.2 86 0.0029 23.9 8.4 58 117-175 59-116 (142)
31 1j1d_B Troponin T, TNT; THIN f 48.0 29 0.001 25.7 4.9 32 114-145 38-69 (106)
32 1deb_A APC protein, adenomatou 47.3 31 0.0011 22.0 4.2 24 151-174 7-30 (54)
33 2aze_A Transcription factor DP 44.7 94 0.0032 24.6 7.6 26 119-144 3-28 (155)
34 3m48_A General control protein 44.4 30 0.001 20.1 3.4 25 151-175 4-28 (33)
35 2oa5_A Hypothetical protein BQ 43.3 14 0.00049 27.6 2.5 23 150-172 11-33 (110)
36 1am9_A Srebp-1A, protein (ster 42.9 42 0.0014 23.4 4.9 29 147-175 50-78 (82)
37 1ci6_A Transcription factor AT 42.8 61 0.0021 21.4 5.5 28 145-172 35-62 (63)
38 1nkp_A C-MYC, MYC proto-oncoge 42.7 49 0.0017 23.4 5.3 24 152-175 64-87 (88)
39 2oxj_A Hybrid alpha/beta pepti 42.5 50 0.0017 19.3 4.4 25 151-175 5-29 (34)
40 3na7_A HP0958; flagellar bioge 41.3 1.3E+02 0.0044 25.2 8.7 26 119-144 88-113 (256)
41 2l5g_A GPS2 protein, G protein 40.6 38 0.0013 20.2 3.6 12 134-145 24-35 (38)
42 3w03_C DNA repair protein XRCC 39.3 42 0.0014 27.4 5.0 30 144-173 149-178 (184)
43 3q4f_C DNA repair protein XRCC 38.0 34 0.0012 27.8 4.1 23 147-169 161-183 (186)
44 1nkp_B MAX protein, MYC proto- 37.5 43 0.0015 23.1 4.3 27 147-173 54-80 (83)
45 1a93_B MAX protein, coiled coi 37.4 55 0.0019 19.2 3.9 22 139-160 6-27 (34)
46 1q08_A Zn(II)-responsive regul 37.2 1E+02 0.0035 21.4 6.7 58 117-174 16-73 (99)
47 1nlw_A MAD protein, MAX dimeri 36.7 61 0.0021 22.5 4.9 26 148-173 48-73 (80)
48 1t6f_A Geminin; coiled-coil, c 36.6 66 0.0023 19.0 4.5 26 142-167 9-34 (37)
49 3gpv_A Transcriptional regulat 36.6 1.4E+02 0.0048 22.8 7.8 58 117-175 73-130 (148)
50 2jee_A YIIU; FTSZ, septum, coi 35.4 1.1E+02 0.0039 21.4 6.1 27 146-172 19-45 (81)
51 1uii_A Geminin; human, DNA rep 34.9 95 0.0033 21.9 5.6 28 145-172 51-78 (83)
52 3i00_A HIP-I, huntingtin-inter 34.3 1.5E+02 0.005 22.3 11.3 30 147-176 54-83 (120)
53 2yy0_A C-MYC-binding protein; 32.8 85 0.0029 20.1 4.7 29 147-175 19-47 (53)
54 3c3g_A Alpha/beta peptide with 32.3 76 0.0026 18.4 4.4 24 152-175 5-28 (33)
55 1t2k_D Cyclic-AMP-dependent tr 31.5 1.1E+02 0.0036 19.8 5.5 26 145-170 34-59 (61)
56 3hnw_A Uncharacterized protein 31.3 1.8E+02 0.006 22.3 11.2 21 152-172 108-128 (138)
57 1kd8_B GABH BLL, GCN4 acid bas 31.0 84 0.0029 18.5 4.4 20 154-173 8-27 (36)
58 3nrf_A APAG protein; structura 29.9 7 0.00024 29.1 -1.1 42 11-57 21-62 (106)
59 1ytz_I Troponin I; muscle, THI 29.8 95 0.0032 25.2 5.6 49 95-144 28-81 (182)
60 3oja_A Leucine-rich immune mol 29.4 3.2E+02 0.011 24.6 12.8 27 148-174 436-462 (487)
61 3m9b_A Proteasome-associated A 28.9 81 0.0028 27.0 5.2 42 122-175 55-96 (251)
62 3c3f_A Alpha/beta peptide with 27.8 94 0.0032 18.1 4.4 24 152-175 6-29 (34)
63 3ra3_B P2F; coiled coil domain 26.6 49 0.0017 17.9 2.2 16 158-173 4-19 (28)
64 1wlq_A Geminin; coiled-coil; 2 26.3 1.3E+02 0.0044 21.2 5.1 28 145-172 43-70 (83)
65 2zxx_A Geminin; coiled-coil, c 26.2 1E+02 0.0036 21.5 4.5 29 144-172 38-66 (79)
66 1g6u_A Domain swapped dimer; d 25.4 1.2E+02 0.004 18.4 4.7 19 116-134 15-33 (48)
67 2bni_A General control protein 24.2 1.1E+02 0.0038 17.8 3.6 24 152-175 6-29 (34)
68 2v71_A Nuclear distribution pr 23.9 2.9E+02 0.01 22.4 12.6 27 148-174 89-115 (189)
69 1uo4_A General control protein 23.8 1.1E+02 0.0039 17.7 3.6 24 152-175 6-29 (34)
70 2hy6_A General control protein 22.8 1.2E+02 0.0042 17.6 3.6 23 152-174 6-28 (34)
71 2wvr_A Geminin; DNA replicatio 22.8 1.5E+02 0.0052 24.4 5.6 28 145-172 120-147 (209)
72 2w6b_A RHO guanine nucleotide 22.7 1.6E+02 0.0055 19.0 4.8 26 147-172 10-35 (56)
73 3aei_A Prefoldin beta subunit 22.6 1.8E+02 0.0062 20.3 5.1 29 140-168 68-96 (99)
74 1kd8_A GABH AIV, GCN4 acid bas 22.2 91 0.0031 18.4 3.0 18 155-172 9-26 (36)
75 1nlw_A MAD protein, MAX dimeri 22.1 1.3E+02 0.0043 20.8 4.4 25 148-172 55-79 (80)
76 2l5g_B Putative uncharacterize 21.5 1.5E+02 0.0051 18.1 4.9 36 118-161 2-37 (42)
77 3s9g_A Protein hexim1; cyclin 20.6 2.5E+02 0.0086 20.4 7.7 60 89-169 35-94 (104)
78 4gfh_A DNA topoisomerase 2; to 20.0 1.7E+02 0.0059 30.5 6.6 44 26-73 958-1001(1177)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.8e-39 Score=234.62 Aligned_cols=72 Identities=50% Similarity=0.879 Sum_probs=70.1
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCL 73 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~ 73 (255)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|+.||+||+.++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~ 72 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999876
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=1.7e-38 Score=236.01 Aligned_cols=74 Identities=49% Similarity=0.851 Sum_probs=71.9
Q ss_pred CcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccccc
Q 025240 2 GRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCLDF 75 (255)
Q Consensus 2 gR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~~~ 75 (255)
||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||+.++..
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988743
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=4.4e-37 Score=232.24 Aligned_cols=71 Identities=41% Similarity=0.637 Sum_probs=69.4
Q ss_pred CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccc
Q 025240 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNK 71 (255)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~ 71 (255)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..||+||..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999864
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=6.5e-37 Score=228.42 Aligned_cols=70 Identities=34% Similarity=0.579 Sum_probs=68.5
Q ss_pred CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCccccccccccccccccc
Q 025240 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYN 70 (255)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~ 70 (255)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..+|++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=2.5e-36 Score=229.51 Aligned_cols=69 Identities=35% Similarity=0.585 Sum_probs=67.9
Q ss_pred CCcccceeEEeccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccc
Q 025240 1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRY 69 (255)
Q Consensus 1 MgR~Ki~ikrIen~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY 69 (255)
|||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|++|..+|+++
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
No 6
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.69 E-value=2.9 Score=29.73 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENET 165 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~ 165 (255)
+|++=|.+||..+..++..| .++.-+|+.|+.|-..|..+|..
T Consensus 3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888999999999999877 45666777777776665555544
No 7
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=89.43 E-value=2.4 Score=28.25 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 116 NGLSLKELQLLEQDLNEGLLLVKE--KKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 116 ~~Ls~~EL~~LE~~Le~~L~~VR~--RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
+..++.|..++.+.|-.+=.+|.. +-+.-+.+|+..|+++.+.|+.||..||.
T Consensus 8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 456788887777777666555532 33445678899999999999999999985
No 8
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.16 E-value=3.7 Score=28.37 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 133 GLLLVKEKKEKLLME---QLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 133 ~L~~VR~RK~qll~~---qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
+-...|.||.+-|.+ ++..|......+..||..|+.++..+.
T Consensus 19 AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 19 AQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777766544 455555555566778888888877654
No 9
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.27 E-value=2.6 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 143 KLLMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 143 qll~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
+.|.++|..|..+...|+.||..||.-.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888888888999999888654
No 10
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=78.95 E-value=11 Score=24.57 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 136 LVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 136 ~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+-|.||. ..++.|..+...|..||..|+.++..+..
T Consensus 15 rSR~RKk----~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 15 ESRRKKK----EYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 34577888899999999999999998876
No 11
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=78.43 E-value=16 Score=28.31 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 95 GLKDEIAKLQMKQLRLLG-----KDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQ 169 (255)
Q Consensus 95 kLk~ei~~Lq~~~r~l~G-----e~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~ 169 (255)
.|.++-+....+-+.++. -+|++||.++|+.+=+.|-..+..+-+-|..+-. +...-.-|=..|+.+
T Consensus 30 ~l~kE~e~k~eeKkkiLaER~~pL~id~ls~~~L~e~~keLh~~I~~LEeEKYDlE~--------kvkkq~yEI~dL~~r 101 (133)
T 1j1d_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIEA--------KVTKNITEIADLTQK 101 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHcchHHHHHHHH
Confidence 344444444444444333 3799999999999999999999988887777632 211122233457777
Q ss_pred HHHHhC
Q 025240 170 VEELRG 175 (255)
Q Consensus 170 ~~~~~~ 175 (255)
|.++.+
T Consensus 102 V~Dl~g 107 (133)
T 1j1d_C 102 IFDLRG 107 (133)
T ss_dssp HHHHC-
T ss_pred HHHHHc
Confidence 877754
No 12
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.19 E-value=7.6 Score=28.50 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 146 MEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 146 ~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
-..|..|..+...|..||..|++.-+.-.
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777888888888888765533
No 13
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=77.04 E-value=8.6 Score=25.78 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 133 GLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 133 ~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+-.+.|.||.+ .++.|..+...|..+|..|+.++..+..
T Consensus 20 AArrsR~RK~~----~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 20 AARRSRARKLQ----RMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666644 4678888889999999999999988765
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=74.50 E-value=19 Score=24.94 Aligned_cols=54 Identities=13% Similarity=0.246 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 115 LNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 115 L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+.+++. +.+|+..|......||.+... |+.|.+.-.....+...|+.++.....
T Consensus 15 ~~~mgt--i~eLq~~L~~K~eELr~kd~~-----I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 15 IEGRGS--LRDLQYALQEKIEELRQRDAL-----IDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp ----CH--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCc--HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444443 788888888888888776544 455555555666677788888877654
No 15
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.49 E-value=27 Score=36.04 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 150 EQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 150 ~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+.|+.+...|.+||..|++++.+++.
T Consensus 1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 1019 HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999988763
No 16
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.13 E-value=20 Score=23.84 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+.++.|..+...|..+|..|+.+|..+..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888877653
No 17
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.52 E-value=19 Score=23.84 Aligned_cols=37 Identities=11% Similarity=0.235 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 135 LLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 135 ~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+-|.||.+. +..|..+...|..+|..|+.+|..+..
T Consensus 15 ~rcR~rKk~~----~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 15 AKCRNRRREL----TDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666444 577888888999999999999877653
No 18
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.17 E-value=22 Score=23.35 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 135 LLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 135 ~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+.|.||.+. ++.|..+...|..+|..|+.+|..+..
T Consensus 14 ~k~R~rKk~~----~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 14 SRSRQKRKVW----VQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666543 567778888888899988888877653
No 19
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=65.62 E-value=29 Score=28.25 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 95 GLKDEIAKLQMKQLRLLG-----KDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLL 145 (255)
Q Consensus 95 kLk~ei~~Lq~~~r~l~G-----e~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll 145 (255)
.|.++-+....+-+.++. -+|++||.++|+.+=+.|-..+..+=+-|..+-
T Consensus 30 ~L~~E~e~k~eEKkkiLaER~kPLnid~Lse~~L~e~ckELh~~I~~LEeEKYDlE 85 (180)
T 1j1e_C 30 ELEREAEERRGEKGRALSTRAQPLELAGLGFAELQDLARQLHARVDKVDEERYDIE 85 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444333333 289999999999999999999999888887763
No 20
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=64.07 E-value=48 Score=25.60 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=7.1
Q ss_pred HHHHhhHHHHHHHHH
Q 025240 91 KEVDGLKDEIAKLQM 105 (255)
Q Consensus 91 ~e~~kLk~ei~~Lq~ 105 (255)
.++-+++.+++.|+.
T Consensus 68 dEl~k~~~~~~~L~~ 82 (138)
T 3hnw_A 68 DDYFKAKKMADSLSL 82 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554443
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=62.75 E-value=27 Score=22.95 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 135 LLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 135 ~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+-|.||.+. ++.|..+...|..+|..|+.++..+..
T Consensus 14 ~k~R~rKk~~----~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 14 SKSRKRKLER----IARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666444 578888889999999999999987654
No 22
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.81 E-value=14 Score=23.97 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVE 171 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~ 171 (255)
.|..+++.|+.|...|.+++..|+.++.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777664
No 23
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=60.74 E-value=26 Score=21.50 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025240 149 LEQSRVQEQRAMLENETLRRQVE 171 (255)
Q Consensus 149 i~~l~~ke~~l~~eN~~Lr~~~~ 171 (255)
...|..+...|+.||..||+.+.
T Consensus 19 naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHhc
Confidence 45566677888999999998763
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.80 E-value=90 Score=29.06 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+++..+++...+.+||..+++++.++..
T Consensus 551 ~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 551 KQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666777777777777655
No 25
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=57.03 E-value=40 Score=24.07 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 151 QSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 151 ~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+..+...|..||..|+.+|+++..
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~ 64 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSR 64 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888887654
No 26
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=55.12 E-value=15 Score=20.44 Aligned_cols=18 Identities=39% Similarity=0.442 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 025240 157 QRAMLENETLRRQVEELR 174 (255)
Q Consensus 157 ~~l~~eN~~Lr~~~~~~~ 174 (255)
..|..||++|+.+++++-
T Consensus 9 asleaenkqlkakveell 26 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457789999999998864
No 27
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.31 E-value=52 Score=22.91 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 150 EQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 150 ~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
..+..+...|..||..|+.+|..+..
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777888899999998887654
No 28
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=51.99 E-value=31 Score=25.60 Aligned_cols=52 Identities=19% Similarity=0.267 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 114 DLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 114 ~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
+|++||.++|+.+=+.|-..+..+-+-|..+-. ..+++. -|=..|+.+|.++
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~----kv~kq~----yEI~eL~~rV~dl 89 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAE----QIKRKK----YEIVTLRNRIDQA 89 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHhhh----hHHHHHHHHHHHh
Confidence 899999999999999999999988888877632 111222 2334577777776
No 29
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=51.90 E-value=22 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+++..++++...|..||..|+++++.++.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777888888888888877653
No 30
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=49.22 E-value=86 Score=23.92 Aligned_cols=58 Identities=17% Similarity=0.157 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|++++|+..+-...+.+-..+.. ..+++.++++.+..+...|+..-..|..++.....
T Consensus 59 G~sL~eIk~~l~~~~~~~~~~~~-~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 59 GLSIEALIDYLALFREGEHTLEA-RAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899998877665544333322 34566777777777777777777777777776554
No 31
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=47.96 E-value=29 Score=25.71 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 114 DLNGLSLKELQLLEQDLNEGLLLVKEKKEKLL 145 (255)
Q Consensus 114 ~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll 145 (255)
+|++||.++|+.+=+.|-..+..+=+-|..+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDlE 69 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDLQ 69 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 79999999999999999999999888887773
No 32
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=47.31 E-value=31 Score=22.05 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 151 QSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 151 ~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
.|-++...|..||..||+.+....
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS 30 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNS 30 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhH
Confidence 344555666778888888887644
No 33
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=44.67 E-value=94 Score=24.57 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 119 SLKELQLLEQDLNEGLLLVKEKKEKL 144 (255)
Q Consensus 119 s~~EL~~LE~~Le~~L~~VR~RK~ql 144 (255)
|+.|.+.||..-...+.+|+.++.+|
T Consensus 3 s~qe~~~Le~Ek~~~~~rI~~K~~~L 28 (155)
T 2aze_A 3 FAQECQNLEVERQRRLERIKQKQSQL 28 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998887665
No 34
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.43 E-value=30 Score=20.15 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 151 QSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 151 ~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.|..|...|..+|..|...++.+..
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445777788888888888877654
No 35
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=43.34 E-value=14 Score=27.59 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025240 150 EQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 150 ~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
+.|..+-..|+-||+.|+++|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556777899999999999954
No 36
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=42.85 E-value=42 Score=23.36 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+-|..|+.+...|.++|..|+..+++...
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~~~~~ 78 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVHKSKS 78 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 44677888888999999999999987653
No 37
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=42.76 E-value=61 Score=21.38 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
|..+...|+.+...|..|+..|+.-|.+
T Consensus 35 L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 35 LEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666677777788888776654
No 38
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.74 E-value=49 Score=23.40 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 152 SRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+......|..+|..|+.+|.++.+
T Consensus 64 l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 64 LISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333344577889999999988754
No 39
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=42.49 E-value=50 Score=19.27 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 151 QSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 151 ~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.|..|...|..+|..|...+..+..
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445666777777777777766543
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=41.28 E-value=1.3e+02 Score=25.21 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 119 SLKELQLLEQDLNEGLLLVKEKKEKL 144 (255)
Q Consensus 119 s~~EL~~LE~~Le~~L~~VR~RK~ql 144 (255)
+-+|+..|.+.++..-.++...-+++
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~ei 113 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREI 113 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888886665554444433
No 41
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.62 E-value=38 Score=20.24 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 025240 134 LLLVKEKKEKLL 145 (255)
Q Consensus 134 L~~VR~RK~qll 145 (255)
|...+.-|.+++
T Consensus 24 l~~LkeEKHQLF 35 (38)
T 2l5g_A 24 LLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444433
No 42
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=39.31 E-value=42 Score=27.36 Aligned_cols=30 Identities=17% Similarity=0.361 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
-+++.+..|+.+...|+++|.+|+..-..+
T Consensus 149 ~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 149 YCLDTIAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778889999999999999999987654
No 43
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=37.96 E-value=34 Score=27.84 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQ 169 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~ 169 (255)
+.|..|+.+-..|++||.+|...
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~e 183 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLRD 183 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55688889999999999999875
No 44
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=37.54 E-value=43 Score=23.14 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
.++..|+.....|..+|..|+.++..+
T Consensus 54 ~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 54 RKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555566667777777777553
No 45
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=37.44 E-value=55 Score=19.20 Aligned_cols=22 Identities=9% Similarity=0.140 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025240 139 EKKEKLLMEQLEQSRVQEQRAM 160 (255)
Q Consensus 139 ~RK~qll~~qi~~l~~ke~~l~ 160 (255)
.||+.-....|+.|+++-..|.
T Consensus 6 RrKn~a~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 6 RRKNDTHQQDIDDLKRQNALLE 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhHhhHHHHHHHHHHHH
Confidence 4677777788888776644443
No 46
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=37.20 E-value=1e+02 Score=21.38 Aligned_cols=58 Identities=14% Similarity=0.125 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
|+|++|+..+-.....+-..-...-..++.++++.+..+...|..--..|...+....
T Consensus 16 GfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~ 73 (99)
T 1q08_A 16 GFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACC 73 (99)
T ss_dssp TCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999887654331110011223455666666666666666655556666665443
No 47
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=36.66 E-value=61 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 148 QLEQSRVQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 148 qi~~l~~ke~~l~~eN~~Lr~~~~~~ 173 (255)
-|..|+.++..+..++..|+.+..++
T Consensus 48 yI~~L~~~~~~l~~e~~~L~~e~~~L 73 (80)
T 1nlw_A 48 HIKKLEDSDRKAVHQIDQLQREQRHL 73 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555443
No 48
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.64 E-value=66 Score=19.01 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 142 EKLLMEQLEQSRVQEQRAMLENETLR 167 (255)
Q Consensus 142 ~qll~~qi~~l~~ke~~l~~eN~~Lr 167 (255)
++.+..+|+.-......|.+||..|.
T Consensus 9 NekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 9 NEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34455566655555567777887765
No 49
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=36.64 E-value=1.4e+02 Score=22.77 Aligned_cols=58 Identities=12% Similarity=0.146 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 117 GLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 117 ~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
+++++|+..+-.....+-..+. ...+++.++++.+..+...|+..-..|..++...+.
T Consensus 73 G~sL~eIk~~l~~~~~~~~~~~-~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 73 GMPIQKIKQFIDWSMEGDSTIL-HRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp TCCHHHHHHHHHHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhhhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999887765443322222 233566777777777777777777777777766554
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=35.40 E-value=1.1e+02 Score=21.39 Aligned_cols=27 Identities=11% Similarity=0.291 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 146 MEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 146 ~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
.+.|.-|+.....|.++|..|..+.++
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444
No 51
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.86 E-value=95 Score=21.91 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
|.++|+.++.....+.++|..|+.-.+.
T Consensus 51 Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 51 LHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555556666777777765544
No 52
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=34.35 E-value=1.5e+02 Score=22.31 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEELRGF 176 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~~ 176 (255)
.+++.-+...+.+..||..||..++.+...
T Consensus 54 ~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 54 ADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444556778999999999988763
No 53
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.81 E-value=85 Score=20.08 Aligned_cols=29 Identities=14% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+++.|+..-..|+.++..|..+++++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777654
No 54
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.32 E-value=76 Score=18.38 Aligned_cols=24 Identities=0% Similarity=-0.028 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 152 SRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|..|...|..+|..|..+++.+..
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334666677777777777766543
No 55
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=31.48 E-value=1.1e+02 Score=19.84 Aligned_cols=26 Identities=15% Similarity=0.003 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQV 170 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~ 170 (255)
|..+...|+.+...|.+|+..|+..+
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666677777777777665
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.34 E-value=1.8e+02 Score=22.31 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025240 152 SRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
+.++...|.+++..|..++..
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~ 128 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVK 128 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444443
No 57
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=31.01 E-value=84 Score=18.53 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 025240 154 VQEQRAMLENETLRRQVEEL 173 (255)
Q Consensus 154 ~ke~~l~~eN~~Lr~~~~~~ 173 (255)
.|...|..+|..|..+++.+
T Consensus 8 ~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 34444444455444444433
No 58
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=29.85 E-value=7 Score=29.11 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=33.0
Q ss_pred eccCCCcccchhhccchhhhhhHhhhhccCCcEEEEEecCCCCcccc
Q 025240 11 IENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEF 57 (255)
Q Consensus 11 Ien~~~RqvTFsKRr~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~ 57 (255)
|.++.....||-=.-.-|.+|.-+|+.+| ++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 34555566777777888999999999765 9999999987754
No 59
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=29.82 E-value=95 Score=25.20 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHHHhhhcC-----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 95 GLKDEIAKLQMKQLRLLG-----KDLNGLSLKELQLLEQDLNEGLLLVKEKKEKL 144 (255)
Q Consensus 95 kLk~ei~~Lq~~~r~l~G-----e~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~ql 144 (255)
.|.++.+....+-+.++. -+|++ |.++|+.+=+.|-..+..+-+-|..+
T Consensus 28 ~L~~E~e~k~eeKkkiLaER~kPLnid~-se~~L~e~ckELh~~I~~LEeEKYDl 81 (182)
T 1ytz_I 28 EIEKEAAAKEVEKQNYLAEHSPPLSLPG-SMQELQELSKKLHAKIDSVDEERYDT 81 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344444444444444443 27888 99999999999999998887777666
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=29.35 E-value=3.2e+02 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 148 QLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 148 qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
..+..+..+..+.+||.+|++.+.++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 345556667777777777777776654
No 61
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.91 E-value=81 Score=26.95 Aligned_cols=42 Identities=29% Similarity=0.431 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 122 ELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 122 EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
.+.+|+.+++.- ..+++.|.+++..++++ ...|+.+++.+..
T Consensus 55 ~l~eL~~ql~~L-----~arNe~L~~~Lk~ar~E-------l~~LkeElerL~s 96 (251)
T 3m9b_A 55 DIHQLEARIDSL-----AARNSKLMETLKEARQQ-------LLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHH-----TTTHHHHHHHHHHHHHH-------HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-------HHHHHHHHHHhcC
Confidence 355555444332 23334444444554444 4455555555543
No 62
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=27.84 E-value=94 Score=18.07 Aligned_cols=24 Identities=0% Similarity=-0.034 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 152 SRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|..|...|..+|..|...++.+..
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345666677777777777766543
No 63
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=26.59 E-value=49 Score=17.91 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 025240 158 RAMLENETLRRQVEEL 173 (255)
Q Consensus 158 ~l~~eN~~Lr~~~~~~ 173 (255)
.|...|.+|++.++.+
T Consensus 4 rlkqknarlkqeiaal 19 (28)
T 3ra3_B 4 RLKQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHH
Confidence 3445566666666554
No 64
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.35 E-value=1.3e+02 Score=21.20 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
|.++|+.++.....|.++|..|+.-...
T Consensus 43 Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 43 LHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566555566677788877765443
No 65
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=26.19 E-value=1e+02 Score=21.49 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 144 LLMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 144 ll~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
.|..+|+.++.....|.+||..|+.-..+
T Consensus 38 ~Lh~~ie~~~eEi~~LkeEN~~L~el~~~ 66 (79)
T 2zxx_A 38 KLHKEIEQKDSEIARLRKENKDLAEVAEH 66 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555677777776655444
No 66
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=25.45 E-value=1.2e+02 Score=18.38 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 025240 116 NGLSLKELQLLEQDLNEGL 134 (255)
Q Consensus 116 ~~Ls~~EL~~LE~~Le~~L 134 (255)
+++|.+||-.||..|..--
T Consensus 15 egfspeelaaleselqale 33 (48)
T 1g6u_A 15 EGFSPEELAALESELQALE 33 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 3688999999888776433
No 67
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=24.23 E-value=1.1e+02 Score=17.80 Aligned_cols=24 Identities=0% Similarity=0.104 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 152 SRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|..|...|..+|..|...++.+..
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 334566666677777776666544
No 68
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.89 E-value=2.9e+02 Score=22.38 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 025240 148 QLEQSRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 148 qi~~l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
+|..|++.-..|...|..|+.+|.+++
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666667777777777765544
No 69
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=23.78 E-value=1.1e+02 Score=17.74 Aligned_cols=24 Identities=0% Similarity=0.077 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Q 025240 152 SRVQEQRAMLENETLRRQVEELRG 175 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~~~~ 175 (255)
|..|...|..+|..|...+..+..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 345666777777777777766554
No 70
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=22.76 E-value=1.2e+02 Score=17.61 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 025240 152 SRVQEQRAMLENETLRRQVEELR 174 (255)
Q Consensus 152 l~~ke~~l~~eN~~Lr~~~~~~~ 174 (255)
|..|...|..+|..|...++.+.
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHH
Confidence 34456666666766666665544
No 71
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=22.75 E-value=1.5e+02 Score=24.41 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 145 LMEQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 145 l~~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
|..+|+.++.....|.+||..|+.-++.
T Consensus 120 Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 120 LHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555666666666655443
No 72
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=22.73 E-value=1.6e+02 Score=19.02 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 147 EQLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 147 ~qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
+-+-.|+.+.+.|..||..|.+-+++
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555566666666665554
No 73
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=22.58 E-value=1.8e+02 Score=20.27 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 140 KKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 140 RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
|-.-....+|+.|+++|+..+++-..|+.
T Consensus 68 r~rl~ykreie~l~~~ekeime~ls~l~~ 96 (99)
T 3aei_A 68 RSRLVYKREIEKLKKREKEIMEELSKLRA 96 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 44456677899999999988877666543
No 74
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.22 E-value=91 Score=18.38 Aligned_cols=18 Identities=17% Similarity=0.077 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 025240 155 QEQRAMLENETLRRQVEE 172 (255)
Q Consensus 155 ke~~l~~eN~~Lr~~~~~ 172 (255)
|...|..+|..|..+++.
T Consensus 9 kVEeLl~~~~~Le~EV~R 26 (36)
T 1kd8_A 9 EVEEIESEVWHLENEVAR 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHH
Confidence 334444444444444433
No 75
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=22.06 E-value=1.3e+02 Score=20.82 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 148 QLEQSRVQEQRAMLENETLRRQVEE 172 (255)
Q Consensus 148 qi~~l~~ke~~l~~eN~~Lr~~~~~ 172 (255)
+...+...-..|..+|..|+++++.
T Consensus 55 ~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 55 SDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344555556677888888888763
No 76
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.51 E-value=1.5e+02 Score=18.14 Aligned_cols=36 Identities=19% Similarity=0.249 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 118 LSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAML 161 (255)
Q Consensus 118 Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~ 161 (255)
++-+||.+=-..++.-+..++ ++|..++.|...|.+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte--------~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVE--------QQISKLKKKQQQLEE 37 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 455666665555555554443 445666776666654
No 77
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=20.64 E-value=2.5e+02 Score=20.42 Aligned_cols=60 Identities=25% Similarity=0.330 Sum_probs=37.6
Q ss_pred hHHHHHhhHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025240 89 DSKEVDGLKDEIAKLQMKQLRLLGKDLNGLSLKELQLLEQDLNEGLLLVKEKKEKLLMEQLEQSRVQEQRAMLENETLRR 168 (255)
Q Consensus 89 ~~~e~~kLk~ei~~Lq~~~r~l~Ge~L~~Ls~~EL~~LE~~Le~~L~~VR~RK~qll~~qi~~l~~ke~~l~~eN~~Lr~ 168 (255)
+-+++-.|.+.++.++.+.+.+ +.+.+.. ..+-+-|-.+|+.|+..-+.|..||..-++
T Consensus 35 LIqEYl~LE~~~s~le~e~~rl-------------r~~~~~~--------~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 35 LIKEYLELEKSLSRMEDENNRL-------------RLESKRL--------DARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHhccc--------hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455666777777776655332 2221111 234445677888998888899999987776
Q ss_pred H
Q 025240 169 Q 169 (255)
Q Consensus 169 ~ 169 (255)
+
T Consensus 94 ~ 94 (104)
T 3s9g_A 94 Q 94 (104)
T ss_dssp C
T ss_pred c
Confidence 5
No 78
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=20.01 E-value=1.7e+02 Score=30.48 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=27.8
Q ss_pred chhhhhhHhhhhccCCcEEEEEecCCCCcccccccccccccccccccc
Q 025240 26 AGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKRTLSRYNKCL 73 (255)
Q Consensus 26 ~GL~KKA~ELSvLCdaeValIvfS~~gkl~e~~s~sm~~ileRY~~~~ 73 (255)
++|+|+- .|.+-.++ .-+++|.+.|++..|. ++++||+-|-.+.
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~~--~l~eiL~~f~~~R 1001 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKYN--SVNEILSEFYYVR 1001 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEECS--SHHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCcC--CHHHHHHHHHHHH
Confidence 4555543 24333222 1468899999988884 4888888886653
Done!