Query 025241
Match_columns 255
No_of_seqs 189 out of 2207
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 03:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 99.9 9.2E-25 2E-29 174.2 19.4 172 55-231 11-187 (187)
2 COG5126 FRQ1 Ca2+-binding prot 99.9 1.4E-24 3.1E-29 167.6 17.3 151 61-222 8-159 (160)
3 KOG0044 Ca2+ sensor (EF-Hand s 99.9 8.9E-24 1.9E-28 168.6 17.0 175 50-229 6-185 (193)
4 KOG0027 Calmodulin and related 99.9 4.8E-21 1E-25 149.7 16.9 143 67-219 2-149 (151)
5 PTZ00183 centrin; Provisional 99.8 1.9E-19 4.1E-24 141.1 18.2 148 65-222 9-157 (158)
6 KOG0028 Ca2+-binding protein ( 99.8 5.6E-19 1.2E-23 133.8 15.9 146 65-220 25-171 (172)
7 PTZ00184 calmodulin; Provision 99.8 1.3E-18 2.9E-23 134.8 17.4 143 66-218 4-147 (149)
8 KOG0038 Ca2+-binding kinase in 99.8 1.1E-17 2.4E-22 124.7 14.2 176 47-229 2-187 (189)
9 KOG0031 Myosin regulatory ligh 99.7 2.6E-15 5.6E-20 113.2 16.6 139 66-218 25-164 (171)
10 KOG0037 Ca2+-binding protein, 99.7 1.2E-15 2.6E-20 121.8 14.7 139 72-227 56-196 (221)
11 KOG0030 Myosin essential light 99.6 4.4E-15 9.4E-20 110.2 12.7 141 67-218 5-150 (152)
12 KOG0036 Predicted mitochondria 99.6 5.8E-15 1.3E-19 127.5 14.1 153 68-236 9-163 (463)
13 PF13499 EF-hand_7: EF-hand do 99.4 1.5E-12 3.3E-17 87.0 7.4 66 148-217 1-66 (66)
14 KOG0027 Calmodulin and related 99.4 5.6E-12 1.2E-16 98.4 11.6 107 110-220 8-114 (151)
15 PLN02964 phosphatidylserine de 99.4 1.7E-11 3.7E-16 114.4 15.5 138 51-195 119-273 (644)
16 KOG4223 Reticulocalbin, calume 99.4 7.6E-12 1.6E-16 105.6 11.1 143 71-222 75-231 (325)
17 KOG0037 Ca2+-binding protein, 99.3 2.8E-11 6.1E-16 96.9 10.9 124 31-172 91-217 (221)
18 KOG0044 Ca2+ sensor (EF-Hand s 99.3 4.1E-11 8.9E-16 96.0 10.6 122 50-173 41-173 (193)
19 COG5126 FRQ1 Ca2+-binding prot 99.3 7.5E-11 1.6E-15 91.5 11.1 100 111-219 21-120 (160)
20 KOG0377 Protein serine/threoni 99.2 1.3E-10 2.8E-15 101.6 12.9 157 52-219 446-615 (631)
21 PTZ00183 centrin; Provisional 99.2 5.9E-10 1.3E-14 87.1 14.3 119 49-173 30-152 (158)
22 PTZ00184 calmodulin; Provision 99.2 3.3E-10 7.1E-15 87.4 11.8 101 111-219 12-112 (149)
23 KOG4223 Reticulocalbin, calume 99.2 2.4E-10 5.2E-15 96.6 10.9 159 46-214 123-300 (325)
24 cd05022 S-100A13 S-100A13: S-1 99.1 3.4E-10 7.3E-15 80.0 7.3 67 147-220 8-76 (89)
25 KOG2643 Ca2+ binding protein, 99.1 9.1E-10 2E-14 96.3 9.8 177 43-241 295-477 (489)
26 cd05027 S-100B S-100B: S-100B 99.0 2E-09 4.3E-14 76.0 8.2 69 147-219 8-79 (88)
27 cd05026 S-100Z S-100Z: S-100Z 99.0 3.2E-09 7E-14 75.8 8.8 70 147-220 10-82 (93)
28 cd05025 S-100A1 S-100A1: S-100 98.9 7.5E-09 1.6E-13 73.8 9.1 72 146-221 8-82 (92)
29 cd05031 S-100A10_like S-100A10 98.9 6E-09 1.3E-13 74.6 8.5 71 146-220 7-80 (94)
30 KOG2562 Protein phosphatase 2 98.9 1.3E-08 2.8E-13 89.9 10.9 145 67-216 272-421 (493)
31 KOG0028 Ca2+-binding protein ( 98.9 2.8E-08 6.1E-13 76.0 10.8 103 110-220 33-135 (172)
32 PF13499 EF-hand_7: EF-hand do 98.9 5E-09 1.1E-13 69.8 5.9 60 113-172 3-65 (66)
33 cd05029 S-100A6 S-100A6: S-100 98.9 1.7E-08 3.6E-13 71.3 8.6 69 147-220 10-80 (88)
34 KOG4666 Predicted phosphate ac 98.9 8.1E-09 1.8E-13 87.2 7.7 163 52-227 205-367 (412)
35 PLN02964 phosphatidylserine de 98.9 2.9E-08 6.4E-13 93.0 12.2 120 89-220 118-244 (644)
36 cd05022 S-100A13 S-100A13: S-1 98.8 2E-08 4.4E-13 70.9 7.9 69 70-139 5-76 (89)
37 KOG0034 Ca2+/calmodulin-depend 98.8 1E-07 2.2E-12 76.5 12.1 119 49-174 47-174 (187)
38 cd00213 S-100 S-100: S-100 dom 98.8 4.7E-08 1E-12 69.0 8.6 71 146-220 7-80 (88)
39 cd00052 EH Eps15 homology doma 98.8 2.9E-08 6.3E-13 66.0 7.2 62 150-221 2-63 (67)
40 KOG0040 Ca2+-binding actin-bun 98.8 2.7E-07 5.9E-12 90.8 16.3 142 63-218 2243-2397(2399)
41 cd00252 SPARC_EC SPARC_EC; ext 98.8 3.5E-08 7.7E-13 73.1 8.1 63 146-220 47-109 (116)
42 smart00027 EH Eps15 homology d 98.8 4.6E-08 1E-12 70.3 8.4 84 146-245 9-92 (96)
43 cd05023 S-100A11 S-100A11: S-1 98.8 5.8E-08 1.3E-12 68.7 8.4 70 147-220 9-81 (89)
44 smart00027 EH Eps15 homology d 98.7 7.7E-08 1.7E-12 69.1 8.8 70 67-139 4-73 (96)
45 cd05026 S-100Z S-100Z: S-100Z 98.7 8E-08 1.7E-12 68.6 8.4 70 70-140 7-83 (93)
46 cd05027 S-100B S-100B: S-100B 98.7 1.1E-07 2.5E-12 67.0 8.4 68 70-139 5-80 (88)
47 KOG0041 Predicted Ca2+-binding 98.7 1.7E-07 3.6E-12 74.3 9.9 111 60-172 86-200 (244)
48 PF13833 EF-hand_8: EF-hand do 98.6 8.6E-08 1.9E-12 61.1 5.9 52 160-219 1-53 (54)
49 cd00051 EFh EF-hand, calcium b 98.6 2.5E-07 5.4E-12 59.7 7.2 61 149-217 2-62 (63)
50 cd00213 S-100 S-100: S-100 dom 98.6 2.8E-07 6E-12 65.0 7.7 69 69-139 4-80 (88)
51 cd05029 S-100A6 S-100A6: S-100 98.6 5.3E-07 1.2E-11 63.6 8.5 69 70-139 7-80 (88)
52 cd00052 EH Eps15 homology doma 98.6 3.6E-07 7.9E-12 60.6 7.2 58 77-137 3-60 (67)
53 cd05023 S-100A11 S-100A11: S-1 98.5 7.4E-07 1.6E-11 63.0 8.3 68 70-139 6-81 (89)
54 cd05025 S-100A1 S-100A1: S-100 98.5 4.6E-07 9.9E-12 64.5 7.3 68 71-140 7-82 (92)
55 PF13833 EF-hand_8: EF-hand do 98.5 4.7E-07 1E-11 57.7 6.3 49 89-137 2-52 (54)
56 KOG0030 Myosin essential light 98.5 3.1E-06 6.7E-11 63.4 11.0 105 109-219 10-116 (152)
57 cd05031 S-100A10_like S-100A10 98.5 9.4E-07 2E-11 63.2 8.1 67 71-139 6-80 (94)
58 KOG4251 Calcium binding protei 98.5 5.8E-07 1.3E-11 73.5 7.7 137 72-217 100-262 (362)
59 KOG0036 Predicted mitochondria 98.5 2.5E-06 5.3E-11 74.7 11.8 96 111-219 15-110 (463)
60 cd00051 EFh EF-hand, calcium b 98.4 1.4E-06 3E-11 56.0 7.5 60 112-172 2-61 (63)
61 cd05030 calgranulins Calgranul 98.4 1.5E-06 3.3E-11 61.3 7.3 67 147-220 8-80 (88)
62 KOG0751 Mitochondrial aspartat 98.4 5.6E-06 1.2E-10 73.9 11.7 147 68-219 31-207 (694)
63 PF00036 EF-hand_1: EF hand; 98.4 4E-07 8.7E-12 50.2 2.7 27 148-174 1-27 (29)
64 PF14658 EF-hand_9: EF-hand do 98.3 2.2E-06 4.7E-11 56.3 6.3 61 151-219 2-64 (66)
65 KOG2643 Ca2+ binding protein, 98.3 6.9E-06 1.5E-10 72.4 11.3 130 76-218 236-383 (489)
66 cd05030 calgranulins Calgranul 98.3 3.2E-06 6.9E-11 59.7 7.6 70 70-139 5-80 (88)
67 cd00252 SPARC_EC SPARC_EC; ext 98.3 4E-06 8.7E-11 62.1 8.0 57 112-173 50-106 (116)
68 PF00036 EF-hand_1: EF hand; 98.2 1.3E-06 2.9E-11 48.1 3.3 27 193-219 2-28 (29)
69 cd05024 S-100A10 S-100A10: A s 98.2 1.2E-05 2.5E-10 56.7 8.6 68 70-140 5-78 (91)
70 PRK12309 transaldolase/EF-hand 98.2 9.4E-06 2E-10 72.5 10.1 103 92-219 282-385 (391)
71 KOG0031 Myosin regulatory ligh 98.2 1.3E-05 2.7E-10 61.2 9.0 97 111-219 33-129 (171)
72 KOG0041 Predicted Ca2+-binding 98.2 8.7E-06 1.9E-10 64.7 7.8 65 147-219 99-163 (244)
73 KOG4251 Calcium binding protei 98.2 7.8E-06 1.7E-10 67.0 7.6 166 49-219 114-309 (362)
74 PF12763 EF-hand_4: Cytoskelet 98.1 1E-05 2.2E-10 58.7 6.5 70 66-139 3-72 (104)
75 cd05024 S-100A10 S-100A10: A s 98.1 2.9E-05 6.4E-10 54.6 8.0 68 147-219 8-76 (91)
76 PF14658 EF-hand_9: EF-hand do 98.1 1.6E-05 3.5E-10 52.3 6.0 60 115-174 3-63 (66)
77 KOG0038 Ca2+-binding kinase in 98.0 3E-05 6.4E-10 58.6 7.8 119 48-173 51-175 (189)
78 PF13405 EF-hand_6: EF-hand do 97.8 1.7E-05 3.8E-10 44.3 2.6 27 148-174 1-27 (31)
79 PF13202 EF-hand_5: EF hand; P 97.8 2.5E-05 5.5E-10 41.4 3.0 24 194-217 2-25 (25)
80 KOG4065 Uncharacterized conser 97.8 0.00015 3.2E-09 52.7 7.2 67 150-216 70-142 (144)
81 PF13202 EF-hand_5: EF hand; P 97.7 3.2E-05 6.9E-10 41.0 2.6 23 150-172 2-24 (25)
82 PRK12309 transaldolase/EF-hand 97.7 0.00064 1.4E-08 60.8 12.1 54 109-176 333-386 (391)
83 KOG0751 Mitochondrial aspartat 97.7 0.00043 9.2E-09 62.2 10.5 114 49-175 87-207 (694)
84 KOG0169 Phosphoinositide-speci 97.6 0.0016 3.4E-08 61.6 13.7 162 68-238 131-294 (746)
85 PF14788 EF-hand_10: EF hand; 97.5 0.00044 9.6E-09 42.9 5.5 48 92-139 2-50 (51)
86 KOG0040 Ca2+-binding actin-bun 97.4 0.001 2.2E-08 66.7 10.5 100 112-218 2255-2360(2399)
87 KOG0046 Ca2+-binding actin-bun 97.4 0.00056 1.2E-08 61.9 7.7 74 64-140 10-87 (627)
88 PF13405 EF-hand_6: EF-hand do 97.4 0.00019 4.2E-09 40.0 3.0 27 193-219 2-28 (31)
89 PF10591 SPARC_Ca_bdg: Secrete 97.4 8.3E-05 1.8E-09 54.9 1.7 62 145-216 52-113 (113)
90 KOG2562 Protein phosphatase 2 97.4 0.0015 3.3E-08 58.4 9.9 160 47-221 150-345 (493)
91 PF12763 EF-hand_4: Cytoskelet 97.3 0.0012 2.7E-08 47.8 6.7 64 145-219 8-71 (104)
92 KOG1029 Endocytic adaptor prot 97.1 0.0075 1.6E-07 57.1 11.8 138 67-218 10-256 (1118)
93 PF14788 EF-hand_10: EF hand; 97.0 0.0034 7.3E-08 39.0 5.6 49 126-175 1-49 (51)
94 PF10591 SPARC_Ca_bdg: Secrete 96.9 0.0011 2.3E-08 49.0 3.5 54 77-133 58-111 (113)
95 KOG0377 Protein serine/threoni 96.9 0.0043 9.3E-08 55.3 7.5 64 111-174 548-614 (631)
96 KOG0046 Ca2+-binding actin-bun 96.7 0.0057 1.2E-07 55.6 7.1 67 147-219 19-85 (627)
97 PLN02952 phosphoinositide phos 96.7 0.024 5.3E-07 53.4 11.5 118 123-245 13-135 (599)
98 smart00054 EFh EF-hand, calciu 96.5 0.0051 1.1E-07 32.2 3.6 26 194-219 3-28 (29)
99 PF09279 EF-hand_like: Phospho 96.5 0.013 2.9E-07 40.5 6.5 69 148-220 1-70 (83)
100 smart00054 EFh EF-hand, calciu 96.3 0.0044 9.5E-08 32.5 2.6 25 149-173 2-26 (29)
101 PF09069 EF-hand_3: EF-hand; 96.2 0.031 6.8E-07 39.3 7.0 79 146-227 2-83 (90)
102 KOG4578 Uncharacterized conser 95.8 0.006 1.3E-07 52.3 2.3 68 148-222 334-401 (421)
103 KOG4347 GTPase-activating prot 95.7 0.049 1.1E-06 51.0 7.9 113 55-169 486-612 (671)
104 KOG3555 Ca2+-binding proteogly 95.7 0.1 2.2E-06 45.3 9.2 103 53-172 201-307 (434)
105 KOG4065 Uncharacterized conser 95.1 0.11 2.4E-06 37.9 6.6 65 66-134 62-141 (144)
106 KOG4666 Predicted phosphate ac 94.8 0.08 1.7E-06 45.6 5.9 97 73-173 259-357 (412)
107 PF09279 EF-hand_like: Phospho 94.5 0.12 2.5E-06 35.6 5.4 61 112-173 2-67 (83)
108 KOG0035 Ca2+-binding actin-bun 94.4 0.26 5.7E-06 48.2 9.0 104 65-171 739-848 (890)
109 KOG3866 DNA-binding protein of 94.1 0.16 3.5E-06 43.5 6.3 70 150-219 247-324 (442)
110 KOG1955 Ral-GTPase effector RA 93.5 0.22 4.8E-06 45.3 6.3 72 65-139 223-294 (737)
111 KOG3555 Ca2+-binding proteogly 93.4 0.14 3E-06 44.5 4.8 62 146-219 249-310 (434)
112 KOG0039 Ferric reductase, NADH 93.4 0.24 5.1E-06 47.7 6.9 95 124-226 2-96 (646)
113 KOG4286 Dystrophin-like protei 93.4 1 2.2E-05 43.1 10.7 162 55-226 402-587 (966)
114 PF05042 Caleosin: Caleosin re 93.1 1.5 3.2E-05 34.7 9.7 139 75-217 9-164 (174)
115 PF05042 Caleosin: Caleosin re 92.6 0.43 9.2E-06 37.6 6.1 41 189-229 94-134 (174)
116 KOG0169 Phosphoinositide-speci 92.6 0.81 1.8E-05 43.9 8.9 105 110-221 136-252 (746)
117 KOG1707 Predicted Ras related/ 90.8 3.6 7.8E-05 38.6 10.9 150 65-223 187-347 (625)
118 KOG0998 Synaptic vesicle prote 89.7 0.42 9.2E-06 47.3 4.3 140 66-219 122-345 (847)
119 KOG1029 Endocytic adaptor prot 89.6 0.5 1.1E-05 45.4 4.4 66 70-138 192-257 (1118)
120 KOG4578 Uncharacterized conser 89.4 0.28 6E-06 42.4 2.4 62 112-173 335-396 (421)
121 KOG1265 Phospholipase C [Lipid 89.0 12 0.00027 37.0 13.2 133 77-219 150-299 (1189)
122 PF05517 p25-alpha: p25-alpha 88.7 2.7 5.8E-05 32.7 7.4 66 73-140 2-71 (154)
123 KOG4347 GTPase-activating prot 88.6 1.1 2.5E-05 42.2 6.0 78 127-213 535-612 (671)
124 KOG0042 Glycerol-3-phosphate d 88.2 1.3 2.7E-05 41.4 5.9 78 63-142 583-661 (680)
125 PF09068 EF-hand_2: EF hand; 86.4 2.4 5.1E-05 31.9 5.7 101 54-174 22-124 (127)
126 PF08726 EFhand_Ca_insen: Ca2+ 85.1 0.2 4.4E-06 33.4 -0.6 60 144-215 3-65 (69)
127 KOG0035 Ca2+-binding actin-bun 82.8 3.8 8.2E-05 40.5 6.6 72 146-221 746-818 (890)
128 PF14513 DAG_kinase_N: Diacylg 82.8 2.2 4.7E-05 32.6 4.0 36 124-159 46-81 (138)
129 PLN02230 phosphoinositide phos 81.6 10 0.00022 36.1 8.9 96 145-245 27-127 (598)
130 KOG3866 DNA-binding protein of 79.8 12 0.00026 32.4 7.8 22 115-136 301-322 (442)
131 KOG0042 Glycerol-3-phosphate d 79.6 3.4 7.3E-05 38.7 4.8 63 149-219 595-657 (680)
132 PLN02952 phosphoinositide phos 79.5 18 0.0004 34.5 9.8 85 88-173 13-108 (599)
133 KOG2243 Ca2+ release channel ( 78.0 4.4 9.5E-05 41.9 5.3 59 151-218 4061-4119(5019)
134 PF14513 DAG_kinase_N: Diacylg 77.8 4.2 9.1E-05 31.0 4.2 73 51-123 6-82 (138)
135 cd07313 terB_like_2 tellurium 77.3 12 0.00027 26.4 6.5 57 147-212 37-93 (104)
136 PF08414 NADPH_Ox: Respiratory 75.2 6.5 0.00014 28.0 4.2 64 71-140 28-94 (100)
137 KOG1955 Ral-GTPase effector RA 74.7 8.8 0.00019 35.4 5.9 60 149-218 233-292 (737)
138 PLN02228 Phosphoinositide phos 74.2 18 0.0004 34.3 8.2 93 144-245 21-118 (567)
139 KOG1707 Predicted Ras related/ 71.9 11 0.00025 35.5 6.1 90 65-160 307-399 (625)
140 PLN02223 phosphoinositide phos 71.3 35 0.00075 32.1 9.2 100 145-246 14-119 (537)
141 KOG4301 Beta-dystrobrevin [Cyt 71.0 16 0.00034 32.2 6.3 152 65-223 48-219 (434)
142 PF09068 EF-hand_2: EF hand; 67.1 51 0.0011 24.7 7.9 71 148-218 42-124 (127)
143 PF05517 p25-alpha: p25-alpha 66.8 58 0.0013 25.2 9.6 70 113-182 2-76 (154)
144 PRK13344 spxA transcriptional 64.6 23 0.00049 26.7 5.6 71 162-239 35-105 (132)
145 PF01023 S_100: S-100/ICaBP ty 63.1 22 0.00047 21.3 4.2 34 70-103 3-36 (44)
146 KOG2243 Ca2+ release channel ( 63.0 13 0.00028 38.8 4.8 83 51-136 4024-4118(5019)
147 KOG4004 Matricellular protein 61.6 3.6 7.8E-05 33.2 0.8 58 151-218 191-249 (259)
148 PLN02222 phosphoinositide phos 57.9 51 0.0011 31.5 7.7 91 145-245 23-115 (581)
149 KOG4004 Matricellular protein 57.8 5.4 0.00012 32.2 1.1 45 124-171 202-246 (259)
150 PF00404 Dockerin_1: Dockerin 57.4 13 0.00029 18.5 2.1 16 157-172 1-16 (21)
151 cd02977 ArsC_family Arsenate R 54.9 25 0.00053 25.0 4.2 34 195-228 61-94 (105)
152 PRK12559 transcriptional regul 54.9 46 0.00099 25.0 5.8 72 162-240 35-106 (131)
153 PF04876 Tenui_NCP: Tenuivirus 53.5 54 0.0012 25.3 5.8 45 184-231 128-172 (175)
154 PF08414 NADPH_Ox: Respiratory 53.5 80 0.0017 22.6 6.3 57 111-173 31-90 (100)
155 KOG2871 Uncharacterized conser 52.9 8.7 0.00019 34.1 1.7 63 145-214 307-369 (449)
156 cd07316 terB_like_DjlA N-termi 51.2 83 0.0018 22.0 8.5 26 185-212 69-94 (106)
157 cd03034 ArsC_ArsC Arsenate Red 51.0 38 0.00082 24.5 4.7 32 197-229 63-94 (112)
158 KOG1264 Phospholipase C [Lipid 51.0 1.1E+02 0.0023 30.6 8.6 147 67-219 137-293 (1267)
159 KOG0998 Synaptic vesicle prote 50.9 11 0.00023 37.7 2.2 72 66-140 276-347 (847)
160 PF09682 Holin_LLH: Phage holi 50.8 67 0.0015 23.2 5.9 50 153-202 57-106 (108)
161 cd03035 ArsC_Yffb Arsenate Red 50.4 24 0.00053 25.3 3.5 34 196-229 60-93 (105)
162 cd03032 ArsC_Spx Arsenate Redu 49.4 56 0.0012 23.7 5.4 33 197-230 64-96 (115)
163 PF08976 DUF1880: Domain of un 49.1 14 0.0003 27.2 2.0 31 184-218 4-34 (118)
164 PF00427 PBS_linker_poly: Phyc 47.4 55 0.0012 24.7 5.1 23 205-227 42-64 (131)
165 TIGR00014 arsC arsenate reduct 45.3 53 0.0012 23.9 4.7 32 197-229 64-95 (114)
166 PF12174 RST: RCD1-SRO-TAF4 (R 44.7 83 0.0018 20.9 5.1 33 66-103 21-53 (70)
167 PF09373 PMBR: Pseudomurein-bi 44.5 27 0.00059 19.4 2.3 23 205-227 2-24 (33)
168 PF09069 EF-hand_3: EF-hand; 43.4 1.1E+02 0.0025 21.4 6.9 59 74-137 4-74 (90)
169 PRK01655 spxA transcriptional 43.4 60 0.0013 24.3 4.8 36 195-231 62-97 (131)
170 PRK09430 djlA Dna-J like membr 43.3 1.8E+02 0.0038 24.8 8.2 108 75-193 58-172 (267)
171 cd07313 terB_like_2 tellurium 42.8 73 0.0016 22.3 5.1 26 113-138 40-65 (104)
172 PF05872 DUF853: Bacterial pro 42.5 55 0.0012 30.3 5.1 133 91-240 105-247 (502)
173 TIGR01616 nitro_assoc nitrogen 40.7 1.1E+02 0.0023 22.9 5.8 44 196-240 62-105 (126)
174 COG1393 ArsC Arsenate reductas 40.6 94 0.002 22.9 5.4 71 163-240 37-107 (117)
175 PF11569 Homez: Homeodomain le 40.5 38 0.00082 21.5 2.7 29 50-78 20-48 (56)
176 cd03033 ArsC_15kD Arsenate Red 40.4 62 0.0013 23.6 4.4 43 197-240 62-104 (113)
177 TIGR01848 PHA_reg_PhaR polyhyd 40.1 47 0.001 24.0 3.5 65 154-222 10-80 (107)
178 PF03960 ArsC: ArsC family; I 40.1 13 0.00029 26.8 0.8 27 206-232 69-95 (110)
179 PLN02228 Phosphoinositide phos 38.9 1.5E+02 0.0033 28.2 7.7 47 90-136 37-90 (567)
180 PF04876 Tenui_NCP: Tenuivirus 37.8 1.4E+02 0.003 23.1 5.8 79 109-196 82-161 (175)
181 PRK10026 arsenate reductase; P 34.9 81 0.0018 24.1 4.4 60 163-229 38-97 (141)
182 TIGR01673 holin_LLH phage holi 34.3 1.8E+02 0.004 21.1 6.1 52 150-201 53-105 (108)
183 PF12174 RST: RCD1-SRO-TAF4 (R 31.4 1.1E+02 0.0025 20.2 4.1 47 126-176 8-54 (70)
184 KOG1954 Endocytosis/signaling 31.4 91 0.002 28.2 4.6 57 76-136 447-503 (532)
185 TIGR01617 arsC_related transcr 30.6 55 0.0012 23.8 2.8 25 206-230 73-97 (117)
186 COG3793 TerB Tellurite resista 30.4 1.4E+02 0.0031 22.9 5.0 14 124-137 38-51 (144)
187 KOG2557 Uncharacterized conser 29.5 94 0.002 27.8 4.3 53 125-178 73-125 (427)
188 PF11848 DUF3368: Domain of un 28.9 1.2E+02 0.0027 18.2 3.7 31 161-194 15-45 (48)
189 PF13608 Potyvirid-P3: Protein 28.7 64 0.0014 29.7 3.4 51 88-138 301-355 (445)
190 PLN02222 phosphoinositide phos 28.4 2.4E+02 0.0051 27.1 7.1 64 67-137 22-89 (581)
191 PF03705 CheR_N: CheR methyltr 28.0 1.2E+02 0.0027 18.5 3.8 51 167-222 3-56 (57)
192 PF02864 STAT_bind: STAT prote 27.8 86 0.0019 26.6 3.8 53 163-215 178-231 (254)
193 cd06404 PB1_aPKC PB1 domain is 27.7 1.3E+02 0.0028 20.8 3.9 20 145-164 57-76 (83)
194 TIGR01565 homeo_ZF_HD homeobox 27.6 1.7E+02 0.0037 18.6 4.8 37 64-107 5-45 (58)
195 KOG1265 Phospholipase C [Lipid 26.5 7.1E+02 0.015 25.5 12.4 78 94-173 207-297 (1189)
196 KOG4403 Cell surface glycoprot 26.0 1.1E+02 0.0024 27.9 4.3 88 122-220 40-130 (575)
197 PRK09430 djlA Dna-J like membr 25.2 4.3E+02 0.0093 22.5 16.3 75 50-131 69-150 (267)
198 cd07176 terB tellurite resista 25.1 1.6E+02 0.0034 20.6 4.4 13 88-100 15-27 (111)
199 cd00086 homeodomain Homeodomai 25.0 1.2E+02 0.0026 18.4 3.3 31 51-81 23-53 (59)
200 PF05099 TerB: Tellurite resis 24.9 1.9E+02 0.004 21.4 5.0 49 88-136 36-87 (140)
201 KOG0506 Glutaminase (contains 24.5 2.7E+02 0.0059 26.0 6.4 68 150-222 89-161 (622)
202 PF12872 OST-HTH: OST-HTH/LOTU 23.9 2.1E+02 0.0045 18.4 5.0 19 198-216 38-56 (74)
203 cd03036 ArsC_like Arsenate Red 23.8 1.7E+02 0.0038 20.9 4.4 35 196-230 62-97 (111)
204 PF05920 Homeobox_KN: Homeobox 23.5 1.4E+02 0.0031 17.3 3.1 29 51-79 9-37 (40)
205 PF13720 Acetyltransf_11: Udp 23.2 2.5E+02 0.0055 19.1 5.1 51 64-120 25-75 (83)
206 PLN02230 phosphoinositide phos 22.9 4.5E+02 0.0098 25.4 7.9 14 90-103 43-56 (598)
207 PF02761 Cbl_N2: CBL proto-onc 22.9 2.7E+02 0.0058 19.3 7.5 51 89-139 20-71 (85)
208 TIGR00470 sepS O-phosphoseryl- 22.6 4.8E+02 0.01 24.5 7.7 64 34-102 86-152 (533)
209 PF08461 HTH_12: Ribonuclease 22.0 1.8E+02 0.0038 18.9 3.7 37 160-204 10-46 (66)
210 PF11829 DUF3349: Protein of u 20.8 3.2E+02 0.0069 19.4 5.2 64 127-194 20-83 (96)
211 cd08330 CARD_ASC_NALP1 Caspase 20.7 2.4E+02 0.0052 19.1 4.3 54 160-226 26-80 (82)
212 KOG0039 Ferric reductase, NADH 20.6 1.8E+02 0.004 28.2 5.0 80 89-174 2-88 (646)
213 KOG3442 Uncharacterized conser 20.3 2.7E+02 0.0058 20.9 4.6 43 160-207 52-94 (132)
214 PF05099 TerB: Tellurite resis 20.1 1.6E+02 0.0035 21.7 3.7 33 50-82 37-73 (140)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.94 E-value=9.2e-25 Score=174.18 Aligned_cols=172 Identities=43% Similarity=0.670 Sum_probs=153.6
Q ss_pred hhHHHHHHhcCC----CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCc-eeH
Q 025241 55 FNDLVRLANNSP----FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGV-IEF 129 (255)
Q Consensus 55 ~~~~~~l~~~~~----~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~-I~f 129 (255)
.++.+.+...+. ++..||..++..|.+++.+. ++|+++.+||..+.. ...++...+++..++.+++|. |+|
T Consensus 11 ~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~~---~~~Np~~~rI~~~f~~~~~~~~v~F 86 (187)
T KOG0034|consen 11 DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIPE---LALNPLADRIIDRFDTDGNGDPVDF 86 (187)
T ss_pred hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHHH---HhcCcHHHHHHHHHhccCCCCccCH
Confidence 566666777777 99999999999999999852 889999999999873 455778999999999999998 999
Q ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcC
Q 025241 130 EEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKIN 209 (255)
Q Consensus 130 ~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is 209 (255)
++|+..+..........++++.+|++||.+++|.|+.+|+..++.++..+.... +++.++.+++..|.++|.++||+|+
T Consensus 87 ~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 87 EEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred HHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 999999999998777888999999999999999999999999998865543333 6899999999999999999999999
Q ss_pred HHHHHHHHHhChhhhhccCCCc
Q 025241 210 REEWKSFALSHPTLLKNMTLPF 231 (255)
Q Consensus 210 ~~EF~~~l~~~~~~~~~~~~~~ 231 (255)
++||.+++.++|.+.+.|+++|
T Consensus 166 feEf~~~v~~~P~~~~~m~~~~ 187 (187)
T KOG0034|consen 166 FEEFCKVVEKQPDLLEKMTIRF 187 (187)
T ss_pred HHHHHHHHHcCccHHHHcCCCC
Confidence 9999999999999999998765
No 2
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=167.56 Aligned_cols=151 Identities=29% Similarity=0.503 Sum_probs=138.9
Q ss_pred HHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 61 LANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 61 l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
+...+.++++++++|+++|..+|++ ++|.|+..+|..+++.+|... .+++.+++..+|. +.|.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 4556889999999999999999996 999999999999999888765 5889999999999 99999999999999998
Q ss_pred CCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 140 HPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 140 ~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.......++++++|++||+|++|+|+..|++.+ +..+|..+++++++++++ .+|.|++|.|+|++|...+..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~v----l~~lge~~~deev~~ll~----~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRV----LKSLGERLSDEEVEKLLK----EYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHH----HHhhcccCCHHHHHHHHH----hcCCCCCceEeHHHHHHHHhc
Confidence 878888999999999999999999999999999 567899999999988884 999999999999999999877
Q ss_pred Chh
Q 025241 220 HPT 222 (255)
Q Consensus 220 ~~~ 222 (255)
.|.
T Consensus 157 ~~~ 159 (160)
T COG5126 157 SPT 159 (160)
T ss_pred cCC
Confidence 663
No 3
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.92 E-value=8.9e-24 Score=168.61 Aligned_cols=175 Identities=31% Similarity=0.514 Sum_probs=156.6
Q ss_pred CCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccC-CCc-hhHHHHHHHHhcCCCCCce
Q 025241 50 KLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTT-SGE-NLFLDRVFDLFDEKKNGVI 127 (255)
Q Consensus 50 ~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~-~~~-~~~~~~lf~~~d~~~~G~I 127 (255)
.+.++++.+.++...+++++.+++.|++-|..-+ .+|.++.++|+.+++.+. .+. ..+++.+|+.+|.|++|.|
T Consensus 6 ~~~~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~c----P~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i 81 (193)
T KOG0044|consen 6 NSKLQPESLEQLVQQTKFSKKEIQQWYRGFKNEC----PSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTI 81 (193)
T ss_pred cccCCcHHHHHHHHhcCCCHHHHHHHHHHhcccC----CCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCc
Confidence 4578888999999999999999999999999965 689999999999998864 343 4689999999999999999
Q ss_pred eHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhcCCC
Q 025241 128 EFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGM---HLSDESLKAIIDKTFADADADG 204 (255)
Q Consensus 128 ~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~---~~~~~~~~~~~~~~f~~~D~~~ 204 (255)
+|.||+..++... .+..++.+.++|++||.||+|+|+++|+..++.+++...+. +..+...++.++.+|+.+|.|+
T Consensus 82 ~F~Efi~als~~~-rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~ 160 (193)
T KOG0044|consen 82 DFLEFICALSLTS-RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNK 160 (193)
T ss_pred CHHHHHHHHHHHc-CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCC
Confidence 9999999999988 66888999999999999999999999999999998877774 2334457788999999999999
Q ss_pred CCCcCHHHHHHHHHhChhhhhccCC
Q 025241 205 DGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 205 dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
||.||++||...+...|.+++.+..
T Consensus 161 Dg~lT~eef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 161 DGKLTLEEFIEGCKADPSILRALEQ 185 (193)
T ss_pred CCcccHHHHHHHhhhCHHHHHHhhh
Confidence 9999999999999999999998864
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.88 E-value=4.8e-21 Score=149.73 Aligned_cols=143 Identities=28% Similarity=0.448 Sum_probs=126.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCCh
Q 025241 67 FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPL 145 (255)
Q Consensus 67 ~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~ 145 (255)
++..++..+..+|..+|.+ ++|+|+..++..+++.++..+ ...+..++..+|.+++|.|+++||+.++.........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 4567888899999999996 999999999999999988775 4689999999999999999999999999877643333
Q ss_pred ----HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 146 ----EDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 146 ----~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.++++.+|+.||+||+|+|+..||+.+ +..+|.+.+.+++++++ +..|.|+||.|+|+||+.++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~----l~~lg~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKV----LTSLGEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHH----HHHhCCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 459999999999999999999999999 56678899988888887 5899999999999999998864
No 5
>PTZ00183 centrin; Provisional
Probab=99.84 E-value=1.9e-19 Score=141.15 Aligned_cols=148 Identities=26% Similarity=0.409 Sum_probs=127.9
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCC
Q 025241 65 SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPST 143 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~ 143 (255)
..+++.+++.+...|..+|.+ ++|.|+..||..++..++... ...+..++..+|.+++|.|+|+||+..+.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 457788999999999999986 999999999999998776543 45789999999999999999999999887654445
Q ss_pred ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChh
Q 025241 144 PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPT 222 (255)
Q Consensus 144 ~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~ 222 (255)
...+.++.+|+.+|.+++|.|+.+||..++ ...|.++++.++..++ ..+|.+++|.|++++|..++...|.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l----~~~~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVA----KELGETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHH----HHhCCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 567889999999999999999999999984 4567888888776665 6899999999999999999988774
No 6
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=5.6e-19 Score=133.82 Aligned_cols=146 Identities=29% Similarity=0.450 Sum_probs=130.4
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCC
Q 025241 65 SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPST 143 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~ 143 (255)
..+++++-+.++..|..++.. ++|+|+.+||..+++.++... ..++.++...+|.++.|.|+|++|+..+.......
T Consensus 25 ~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 25 SELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred ccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 445666777888889988874 999999999999999988765 56789999999999999999999999977766566
Q ss_pred ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 144 PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 144 ~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
.+.+++..+|+++|.|++|.|+..+|+.+ ..++|..+++++++++++ +.|.+++|.|.-+||.++++..
T Consensus 103 dt~eEi~~afrl~D~D~~Gkis~~~lkrv----akeLgenltD~El~eMIe----EAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 103 DTKEEIKKAFRLFDDDKTGKISQRNLKRV----AKELGENLTDEELMEMIE----EADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred CcHHHHHHHHHcccccCCCCcCHHHHHHH----HHHhCccccHHHHHHHHH----HhcccccccccHHHHHHHHhcC
Confidence 78999999999999999999999999998 678899999999999995 8999999999999999998753
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.82 E-value=1.3e-18 Score=134.78 Aligned_cols=143 Identities=28% Similarity=0.478 Sum_probs=123.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCC
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTP 144 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~ 144 (255)
.+++++++.+...|..+|.+ ++|.|+.++|..++..++... ...+..++..+|.+++|.|+|++|+..+........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 46788899999999999996 999999999999988766443 467899999999999999999999999887654455
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
..+.+..+|+.+|.+++|.|+.+||..++ ...|..++.++++.++ ..+|.+++|.|+++||+.++.
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l----~~~~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVM----TNLGEKLTDEEVDEMI----READVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHH----HHHCCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHh
Confidence 67889999999999999999999999985 4457778877666655 689999999999999998875
No 8
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=124.72 Aligned_cols=176 Identities=26% Similarity=0.443 Sum_probs=148.9
Q ss_pred CCCCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCC---------CCCcccHHHHHHHHhccC-CCchhHHHHHH
Q 025241 47 CPPKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLI---------DDGLIHKEELRLALLKTT-SGENLFLDRVF 116 (255)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d---------~~G~is~~e~~~~l~~~~-~~~~~~~~~lf 116 (255)
|+.....+.+++..++..+-++.++|-++++.|..+.++-. ..-.++.+.+. +++ +..++.-+++.
T Consensus 2 GNK~~vFT~eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~----kMPELkenpfk~ri~ 77 (189)
T KOG0038|consen 2 GNKQTVFTEEQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIE----KMPELKENPFKRRIC 77 (189)
T ss_pred CCccceeeHHHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHh----hChhhhcChHHHHHH
Confidence 34556788999999999999999999999999999876411 11233444333 233 55678889999
Q ss_pred HHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 025241 117 DLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKT 196 (255)
Q Consensus 117 ~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~ 196 (255)
+.+..+|.|.++|++|+..++.++...+.+-++..+|+.||-|+|+.|..+++...+.++ ....+++++++-+.+++
T Consensus 78 e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l---Tr~eLs~eEv~~i~ekv 154 (189)
T KOG0038|consen 78 EVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL---TRDELSDEEVELICEKV 154 (189)
T ss_pred HHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH---hhccCCHHHHHHHHHHH
Confidence 999999999999999999999998778888899999999999999999999999997654 34578999999999999
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhChhhhhccCC
Q 025241 197 FADADADGDGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 197 f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
..+.|.||||++++.||.+++.+.|+++..+..
T Consensus 155 ieEAD~DgDgkl~~~eFe~~i~raPDFlsTFHI 187 (189)
T KOG0038|consen 155 IEEADLDGDGKLSFAEFEHVILRAPDFLSTFHI 187 (189)
T ss_pred HHHhcCCCCCcccHHHHHHHHHhCcchHhhhee
Confidence 999999999999999999999999999887654
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.69 E-value=2.6e-15 Score=113.22 Aligned_cols=139 Identities=24% Similarity=0.361 Sum_probs=123.2
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCC
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTP 144 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~ 144 (255)
.|+..+|++++++|..+|+| +||.|+.++++..+..++... ..++..++.. ..|.|+|--|+..+........
T Consensus 25 mf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FLTmfGekL~gtd 98 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFLTMFGEKLNGTD 98 (171)
T ss_pred HhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHHHHHHHHhcCCC
Confidence 35788999999999999997 999999999999999988554 4567777776 5889999999999988776778
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
+++.+..+|+.||.+++|.|..+.|+.+ +...|.++++++++++. +.+-.+..|.|+|..|..++.
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~----Ltt~gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLREL----LTTMGDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHH----HHHhcccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHH
Confidence 8999999999999999999999999998 66689999999987777 578888899999999999886
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-15 Score=121.78 Aligned_cols=139 Identities=24% Similarity=0.372 Sum_probs=121.2
Q ss_pred HHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC--chhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHH
Q 025241 72 VEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG--ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKI 149 (255)
Q Consensus 72 i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~--~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~ 149 (255)
-..+...|...|++ +.|.|+.+|++.+|...... ....|+-++.++|.+.+|.|+|+||..+|..+ ..+
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHH
Confidence 34577889999985 99999999999998744332 24679999999999999999999999999877 499
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhcc
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNM 227 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~ 227 (255)
+.+|+.||.|++|.|+..||+.+ +..+|..++++..+-++ +.+|..++|.|.|++|+.++...+.+.+.+
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~A----l~~~Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQA----LTQLGYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHH----HHHcCcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 67789999998777777 589988899999999999998887776655
No 11
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.65 E-value=4.4e-15 Score=110.16 Aligned_cols=141 Identities=21% Similarity=0.325 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCC--CCCceeHHHHHHHHHhhCCC-
Q 025241 67 FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEK--KNGVIEFEEFVRALSIFHPS- 142 (255)
Q Consensus 67 ~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~--~~G~I~f~Ef~~~~~~~~~~- 142 (255)
+++++...++.+|..+|.. +||+|+..+...+|+.++..+ +..+.+....++.+ .-.+|+|++|+..+..+.++
T Consensus 5 ~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk 82 (152)
T KOG0030|consen 5 FTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK 82 (152)
T ss_pred cCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc
Confidence 4556677888888888887 999999999999999988766 56788888888776 34689999999999888744
Q ss_pred -CChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 143 -TPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 143 -~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
....++.-..++.||++|+|.|...||+++ +..+|.+++++++++++ .--.|.+|.|.|+.|++-+.
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhv----LttlGekl~eeEVe~Ll-----ag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHV----LTTLGEKLTEEEVEELL-----AGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHH----HHHHHhhccHHHHHHHH-----ccccccCCcCcHHHHHHHHh
Confidence 345688889999999999999999999999 55679999999999999 45667889999999998764
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.63 E-value=5.8e-15 Score=127.48 Aligned_cols=153 Identities=27% Similarity=0.414 Sum_probs=131.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC-c-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCCh
Q 025241 68 TINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG-E-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPL 145 (255)
Q Consensus 68 s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~-~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~ 145 (255)
.++.-.++..+|+.+|.+ ++|.++..++...+..+... . ....+.+|..+|.|.+|+++|+||...+.. .
T Consensus 9 ~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------~ 80 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------K 80 (463)
T ss_pred cHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------h
Confidence 344556788899999986 99999999999998887654 2 356889999999999999999999999874 3
Q ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhh
Q 025241 146 EDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLK 225 (255)
Q Consensus 146 ~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~ 225 (255)
+.++..+|+..|.++||.|...|+... +..+|..+++++++.++ +.+|+++++.|+++||...+..+|..--
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~----l~~~gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p~s~i 152 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRY----LKDLGIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYPESDL 152 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHH----HHHhCCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCChhHH
Confidence 468999999999999999999999999 67789999999888877 5899999999999999999999996555
Q ss_pred ccCCCcccccc
Q 025241 226 NMTLPFLKDMT 236 (255)
Q Consensus 226 ~~~~~~~~~~~ 236 (255)
.-.+.+|+|+.
T Consensus 153 ~di~~~W~h~~ 163 (463)
T KOG0036|consen 153 EDIYDFWRHVL 163 (463)
T ss_pred HHHHHhhhhhe
Confidence 55677888876
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=1.5e-12 Score=86.97 Aligned_cols=66 Identities=35% Similarity=0.648 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 025241 148 KIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFA 217 (255)
Q Consensus 148 ~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l 217 (255)
+++.+|+.+|.|++|.|+.+||..+ +...+....+..+++.+..+|+.+|.|+||.|+++||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~----~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRA----LKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHH----HHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHH----HHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4688999999999999999999999 55567777788999999999999999999999999999875
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.39 E-value=5.6e-12 Score=98.41 Aligned_cols=107 Identities=27% Similarity=0.347 Sum_probs=88.6
Q ss_pred hHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Q 025241 110 LFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESL 189 (255)
Q Consensus 110 ~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~ 189 (255)
..+..+|..+|.+++|.|+-.|+..++..+. ..++..+++.+++.+|.+|+|.|+.+||..++........... ..
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg-~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~---~~ 83 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLG-QNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE---AS 83 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc---cc
Confidence 4578999999999999999999999999987 5688999999999999999999999999999654322111110 12
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 190 KAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 190 ~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
.+-+..+|+.+|.|++|+|+.+|+.+++...
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 3356788899999999999999999998763
No 15
>PLN02964 phosphatidylserine decarboxylase
Probab=99.37 E-value=1.7e-11 Score=114.39 Aligned_cols=138 Identities=21% Similarity=0.313 Sum_probs=111.4
Q ss_pred CCCChhHHHHHHhc--CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCC-Cch----hHHHHHHHHhcCCC
Q 025241 51 LRYTFNDLVRLANN--SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTS-GEN----LFLDRVFDLFDEKK 123 (255)
Q Consensus 51 ~~l~~~~~~~l~~~--~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~-~~~----~~~~~lf~~~d~~~ 123 (255)
.+++++.+..+++. +.++.++++++++.|+.+|++ ++|.+ +..+++.++. .+. .+++++|..+|.++
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dg 192 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDE 192 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC
Confidence 47889999999988 899999999999999999996 99987 7777777662 332 24899999999999
Q ss_pred CCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHH---------HHhcCCCCCH-HHHHHHH
Q 025241 124 NGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVAT---------LQESGMHLSD-ESLKAII 193 (255)
Q Consensus 124 ~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~---------~~~~g~~~~~-~~~~~~~ 193 (255)
+|.|+++||+.++..+. ....+++++.+|+.||+|++|.|+.+||..++... ++..|..++. .+...++
T Consensus 193 dG~IdfdEFl~lL~~lg-~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~ii 271 (644)
T PLN02964 193 DGQLSFSEFSDLIKAFG-NLVAANKKEELFKAADLNGDGVVTIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMI 271 (644)
T ss_pred CCeEcHHHHHHHHHHhc-cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHH
Confidence 99999999999998765 45678899999999999999999999999997652 1223444554 4555566
Q ss_pred HH
Q 025241 194 DK 195 (255)
Q Consensus 194 ~~ 195 (255)
..
T Consensus 272 H~ 273 (644)
T PLN02964 272 HM 273 (644)
T ss_pred HH
Confidence 43
No 16
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=7.6e-12 Score=105.57 Aligned_cols=143 Identities=24% Similarity=0.347 Sum_probs=112.0
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC-chhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCC-------C
Q 025241 71 EVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG-ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHP-------S 142 (255)
Q Consensus 71 ~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~-~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~-------~ 142 (255)
.-.++..++.++|.+ ++|+|+..|++.++...... ......+-+..+|.|.+|.|+|+|++........ .
T Consensus 75 ~~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hHHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 455688888999864 99999999999987653222 2345778888999999999999999998764310 0
Q ss_pred CC------hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 025241 143 TP------LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSF 216 (255)
Q Consensus 143 ~~------~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~ 216 (255)
.. .-.+-+.-|+.-|.|++|.++++||..++ .++-..+|.+..+.+-+ ..+|+|+||+|+++||+.-
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL---HPEe~p~M~~iVi~Etl----~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL---HPEEHPHMKDIVIAETL----EDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc---ChhhcchHHHHHHHHHH----hhcccCCCCceeHHHHHhH
Confidence 00 11223567999999999999999999996 56667788888787777 4899999999999999998
Q ss_pred HHhChh
Q 025241 217 ALSHPT 222 (255)
Q Consensus 217 l~~~~~ 222 (255)
+...++
T Consensus 226 ~~~~~~ 231 (325)
T KOG4223|consen 226 LYSHEG 231 (325)
T ss_pred HhhccC
Confidence 877654
No 17
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.30 E-value=2.8e-11 Score=96.93 Aligned_cols=124 Identities=22% Similarity=0.362 Sum_probs=105.8
Q ss_pred HHHHHHHHhcCcccCCCCCCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCch-
Q 025241 31 FVEDLIFSLTGCFDHHCPPKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGEN- 109 (255)
Q Consensus 31 ~~~~~~~~~~~c~~~~~~~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~- 109 (255)
+..+.|+.|+..++....+ ++..+|+..|+ .-|+.|+..|+.+|++ ++|.|+..||+.+|..++...+
T Consensus 91 Fs~~TcrlmI~mfd~~~~G--~i~f~EF~~Lw-------~~i~~Wr~vF~~~D~D--~SG~I~~sEL~~Al~~~Gy~Lsp 159 (221)
T KOG0037|consen 91 FSIETCRLMISMFDRDNSG--TIGFKEFKALW-------KYINQWRNVFRTYDRD--RSGTIDSSELRQALTQLGYRLSP 159 (221)
T ss_pred CCHHHHHHHHHHhcCCCCC--ccCHHHHHHHH-------HHHHHHHHHHHhcccC--CCCcccHHHHHHHHHHcCcCCCH
Confidence 3456678888888877544 89999999999 7889999999999995 9999999999999999998765
Q ss_pred hHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCc--CHHHHHHH
Q 025241 110 LFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCI--EPEQVRQM 172 (255)
Q Consensus 110 ~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I--~~~Ef~~~ 172 (255)
...+-+++.+|..++|.|.|++|+.++..+. .+.++|+.+|.+.+|.| +.++|..+
T Consensus 160 q~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~-------~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 160 QFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQ-------RLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred HHHHHHHHHhccccCCceeHHHHHHHHHHHH-------HHHHHHHHhccccceeEEEeHHHHHHH
Confidence 4577788999988899999999999998874 88999999999999975 46666554
No 18
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.27 E-value=4.1e-11 Score=96.01 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=99.4
Q ss_pred CCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC-chhHHHHHHHHhcCCCCCcee
Q 025241 50 KLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG-ENLFLDRVFDLFDEKKNGVIE 128 (255)
Q Consensus 50 ~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~-~~~~~~~lf~~~d~~~~G~I~ 128 (255)
.+.++.++++++.+.+.-....-.....+|..+|.+ ++|.|+..||..++..+-.+ ....+...|+.+|.|++|.|+
T Consensus 41 ~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~--~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It 118 (193)
T KOG0044|consen 41 SGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN--KDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYIT 118 (193)
T ss_pred CCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc--CCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEc
Confidence 568999999998887665455667778889999996 99999999998888765433 345577789999999999999
Q ss_pred HHHHHHHHHhhCC----------CCChHHHHHHHHHHcCCCCCCCcCHHHHHHHH
Q 025241 129 FEEFVRALSIFHP----------STPLEDKIDFAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 129 f~Ef~~~~~~~~~----------~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
++|++.++..... ....++.+..+|+.+|.|+||.|+.+||....
T Consensus 119 ~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 119 KEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred HHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 9999998765421 12256788999999999999999999999874
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.26 E-value=7.5e-11 Score=91.47 Aligned_cols=100 Identities=23% Similarity=0.309 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLK 190 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~ 190 (255)
.+++.|..+|.+++|.|++.++..++..+. ..++...+..+|..+|. |+|.|++.+|..+|..... ..-++
T Consensus 21 ~lkeaF~l~D~d~~G~I~~~el~~ilr~lg-~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~---~~~~~---- 91 (160)
T COG5126 21 ELKEAFQLFDRDSDGLIDRNELGKILRSLG-FNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK---RGDKE---- 91 (160)
T ss_pred HHHHHHHHhCcCCCCCCcHHHHHHHHHHcC-CCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc---cCCcH----
Confidence 488999999999999999999999998554 78899999999999999 9999999999999644321 22223
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 191 AIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 191 ~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
+-+..+|+.+|.|++|+|+..|++.+++.
T Consensus 92 Eel~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 92 EELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred HHHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 33567889999999999999999999974
No 20
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.24 E-value=1.3e-10 Score=101.57 Aligned_cols=157 Identities=14% Similarity=0.147 Sum_probs=112.3
Q ss_pred CCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhcc-CCCchhHHHHHH-HHhcCCCCCceeH
Q 025241 52 RYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKT-TSGENLFLDRVF-DLFDEKKNGVIEF 129 (255)
Q Consensus 52 ~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~-~~~~~~~~~~lf-~~~d~~~~G~I~f 129 (255)
.+....++.+.+... ..-..+.+.|+.+|.. ++|+|+..++..++... +++.. +..+- +......+|.|.|
T Consensus 446 ~vEeSAlk~Lrerl~---s~~sdL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LP--Wr~L~~kla~~s~d~~v~Y 518 (631)
T KOG0377|consen 446 IVEESALKELRERLR---SHRSDLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLP--WRLLRPKLANGSDDGKVEY 518 (631)
T ss_pred HHHHHHHHHHHHHHH---hhhhHHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCc--HHHhhhhccCCCcCcceeh
Confidence 333444555554332 2334577889999986 99999999999988763 23322 11121 2334456789999
Q ss_pred HHHHHHHHhhCCC-----------CChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 025241 130 EEFVRALSIFHPS-----------TPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFA 198 (255)
Q Consensus 130 ~Ef~~~~~~~~~~-----------~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~ 198 (255)
.+.+..+..-... ......++.+|+.+|.|++|.|+.+||+.+++-+-.....++++.++.++.+
T Consensus 519 ~~~~~~l~~e~~~~ea~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~---- 594 (631)
T KOG0377|consen 519 KSTLDNLDTEVILEEAGSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELAR---- 594 (631)
T ss_pred HhHHHHhhhhhHHHHHHhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHH----
Confidence 8877765432100 0123456788999999999999999999998877777788899999888885
Q ss_pred HhcCCCCCCcCHHHHHHHHHh
Q 025241 199 DADADGDGKINREEWKSFALS 219 (255)
Q Consensus 199 ~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.+|.|+||.|++.||+.+.+-
T Consensus 595 ~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 595 SMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred hhccCCCCcccHHHHHHHHhh
Confidence 899999999999999998754
No 21
>PTZ00183 centrin; Provisional
Probab=99.21 E-value=5.9e-10 Score=87.07 Aligned_cols=119 Identities=17% Similarity=0.197 Sum_probs=95.1
Q ss_pred CCCCCChhHHHHHHhcCC--CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhcc--CCCchhHHHHHHHHhcCCCC
Q 025241 49 PKLRYTFNDLVRLANNSP--FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKT--TSGENLFLDRVFDLFDEKKN 124 (255)
Q Consensus 49 ~~~~l~~~~~~~l~~~~~--~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~--~~~~~~~~~~lf~~~d~~~~ 124 (255)
..+.++..++..+..... .+... +..+|..+|.+ ++|.|+..+|..++... .......++.+|..+|.+++
T Consensus 30 ~~G~i~~~e~~~~l~~~g~~~~~~~---~~~l~~~~d~~--~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~ 104 (158)
T PTZ00183 30 GSGTIDPKELKVAMRSLGFEPKKEE---IKQMIADVDKD--GSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKT 104 (158)
T ss_pred CCCcccHHHHHHHHHHhCCCCCHHH---HHHHHHHhCCC--CCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCC
Confidence 355999999998776433 34444 55666667765 99999999999887653 22234568999999999999
Q ss_pred CceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHH
Q 025241 125 GVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 125 G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
|.|+.+||..++..+. .....+++..+|..+|.+++|.|+++||..++
T Consensus 105 G~i~~~e~~~~l~~~~-~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 105 GKISLKNLKRVAKELG-ETITDEELQEMIDEADRNGDGEISEEEFYRIM 152 (158)
T ss_pred CcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 9999999999998664 34567889999999999999999999999885
No 22
>PTZ00184 calmodulin; Provisional
Probab=99.19 E-value=3.3e-10 Score=87.42 Aligned_cols=101 Identities=20% Similarity=0.303 Sum_probs=82.8
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLK 190 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~ 190 (255)
.+...|..+|.+++|.|+++||..++..+. .....+.+..+|+.+|.+++|.|+++||..++...+. ... ..
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~---~~~----~~ 83 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK---DTD----SE 83 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc---CCc----HH
Confidence 367899999999999999999999987664 3455778999999999999999999999998643211 111 22
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 191 AIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 191 ~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
+.+..+|+.+|.+++|.|+.+||..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 45678889999999999999999998864
No 23
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=2.4e-10 Score=96.56 Aligned_cols=159 Identities=18% Similarity=0.244 Sum_probs=112.2
Q ss_pred CCCCCCCCChhHHHHHHhcC-------------CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC--chh
Q 025241 46 HCPPKLRYTFNDLVRLANNS-------------PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG--ENL 110 (255)
Q Consensus 46 ~~~~~~~l~~~~~~~l~~~~-------------~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~--~~~ 110 (255)
..+..+.+++++.....-.. ..-...+.+-...|...|.+ ++|.++.+||...|.--... ..-
T Consensus 123 d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~i 200 (325)
T KOG4223|consen 123 DKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDI 200 (325)
T ss_pred ccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHH
Confidence 34466788888777543211 11234566777889999996 99999999999877521111 123
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChH----HHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLE----DKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSD 186 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~----~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~ 186 (255)
.++..+...|.|++|.|+++||+.-+..-..++... .+-++.+...|+|+||+++.+|++..+ .-.+.....
T Consensus 201 Vi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI----~P~~~d~A~ 276 (325)
T KOG4223|consen 201 VIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWI----LPSEQDHAK 276 (325)
T ss_pred HHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhccc----CCCCccHHH
Confidence 477888889999999999999999887665433222 233567788899999999999999763 223333344
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCHHHHH
Q 025241 187 ESLKAIIDKTFADADADGDGKINREEWK 214 (255)
Q Consensus 187 ~~~~~~~~~~f~~~D~~~dG~Is~~EF~ 214 (255)
.+..-++ -+.|.|+||++|++|.+
T Consensus 277 ~EA~hL~----~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 277 AEARHLL----HEADEDKDGKLSKEEIL 300 (325)
T ss_pred HHHHHHh----hhhccCccccccHHHHh
Confidence 4444444 68999999999999974
No 24
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.10 E-value=3.4e-10 Score=79.96 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCC-CCCCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 147 DKIDFAFRLYDL-RETGCIEPEQVRQMVVATLQESGMHLSD-ESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 147 ~~~~~~F~~~D~-d~dG~I~~~Ef~~~l~~~~~~~g~~~~~-~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
..+..+|+.||+ +++|+|+..||+.+++. ++|..+++ .++++++ +..|.|+||.|+|+||+.++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~---elg~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQ---QLPHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHH---HhhhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 568899999999 99999999999999644 25666776 6666665 68999999999999999988653
No 25
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=99.06 E-value=9.1e-10 Score=96.27 Aligned_cols=177 Identities=21% Similarity=0.355 Sum_probs=126.2
Q ss_pred ccCCCCCCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccC-CC--c-hhHHHHHHHH
Q 025241 43 FDHHCPPKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTT-SG--E-NLFLDRVFDL 118 (255)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~-~~--~-~~~~~~lf~~ 118 (255)
|+..++. +++.+++.++.+.. +.+.+.-.|..+|+. .+|.|+..+|..+|-... .. . ...++++-..
T Consensus 295 FG~rg~~--kLs~deF~~F~e~L-----q~Eil~lEF~~~~~~--~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~k 365 (489)
T KOG2643|consen 295 FGKRGNG--KLSIDEFLKFQENL-----QEEILELEFERFDKG--DSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEK 365 (489)
T ss_pred hccCCCc--cccHHHHHHHHHHH-----HHHHHHHHHHHhCcc--cccccCHHHHHHHHHHHcccchHhHHHHHHHHHHh
Confidence 3444544 99999999988554 344566779999985 569999999998775433 22 1 2357788888
Q ss_pred hcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 025241 119 FDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFA 198 (255)
Q Consensus 119 ~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~ 198 (255)
++.++. .|+++||..+...+. +-.++..+...| ..-.+.|+..+|+++.. ...|..+++. +++.+|.
T Consensus 366 f~~~~~-gISl~Ef~~Ff~Fl~----~l~dfd~Al~fy-~~Ag~~i~~~~f~raa~---~vtGveLSdh----VvdvvF~ 432 (489)
T KOG2643|consen 366 FKDDGK-GISLQEFKAFFRFLN----NLNDFDIALRFY-HMAGASIDEKTFQRAAK---VVTGVELSDH----VVDVVFT 432 (489)
T ss_pred ccCCCC-CcCHHHHHHHHHHHh----hhhHHHHHHHHH-HHcCCCCCHHHHHHHHH---HhcCcccccc----eeeeEEE
Confidence 877744 499999999987664 335666676666 34457899999999864 4577888876 5567778
Q ss_pred HhcCCCCCCcCHHHHHHHHHh--ChhhhhccCCCccccccccCCc
Q 025241 199 DADADGDGKINREEWKSFALS--HPTLLKNMTLPFLKDMTTVFPS 241 (255)
Q Consensus 199 ~~D~~~dG~Is~~EF~~~l~~--~~~~~~~~~~~~~~~~~~~~~~ 241 (255)
.||.|+||.+|.+||+.++++ ++++-..-..-+.+.|...|-|
T Consensus 433 IFD~N~Dg~LS~~EFl~Vmk~Rmhrgl~~p~~~gl~~~~~~v~kc 477 (489)
T KOG2643|consen 433 IFDENNDGTLSHKEFLAVMKRRMHRGLELPKDTGLLRYMKAVKKC 477 (489)
T ss_pred EEccCCCCcccHHHHHHHHHHHhhccccCCcccchHHHHHHHHHH
Confidence 999999999999999999875 4434433333344444444444
No 26
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.01 E-value=2e-09 Score=76.04 Aligned_cols=69 Identities=16% Similarity=0.291 Sum_probs=56.6
Q ss_pred HHHHHHHHHcC-CCCCC-CcCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 147 DKIDFAFRLYD-LRETG-CIEPEQVRQMVVATLQE-SGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 147 ~~~~~~F~~~D-~d~dG-~I~~~Ef~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
..+..+|+.|| +||+| .|+.+||+.+|+.-++. .|...++.++++++ +..|.|++|+|+|+||+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 57889999998 79999 59999999996542222 56777888888877 4889999999999999988754
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.99 E-value=3.2e-09 Score=75.83 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=54.6
Q ss_pred HHHHHHHHHcC-CCCCC-CcCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 147 DKIDFAFRLYD-LRETG-CIEPEQVRQMVVATLQ-ESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 147 ~~~~~~F~~~D-~d~dG-~I~~~Ef~~~l~~~~~-~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
..+..+|+.|| +||+| .|+..||+.++...+. ..+...++.++++++ +.+|.|+||.|+|+||+.++...
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHH
Confidence 46788899999 88998 5999999999765322 223344666666666 68999999999999999988664
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.94 E-value=7.5e-09 Score=73.81 Aligned_cols=72 Identities=11% Similarity=0.263 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcC-CCCCCC-cCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhCh
Q 025241 146 EDKIDFAFRLYD-LRETGC-IEPEQVRQMVVATLQ-ESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHP 221 (255)
Q Consensus 146 ~~~~~~~F~~~D-~d~dG~-I~~~Ef~~~l~~~~~-~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~ 221 (255)
.+.++.+|+.|| ++|+|. |+..||+.++++.+. ..+..++++++++++ +.+|.|++|.|+|+||+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 467899999997 999995 999999999764222 234456777666666 589999999999999999887543
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.94 E-value=6e-09 Score=74.63 Aligned_cols=71 Identities=20% Similarity=0.327 Sum_probs=57.5
Q ss_pred HHHHHHHHHHcCC-CC-CCCcCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 146 EDKIDFAFRLYDL-RE-TGCIEPEQVRQMVVATLQE-SGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 146 ~~~~~~~F~~~D~-d~-dG~I~~~Ef~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
...+..+|+.||. || +|.|+.+||+.++.+.+.. .|..++++++++++ +.+|.+++|.|+|+||+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHH
Confidence 4578899999997 97 6999999999997653322 56677777776666 58999999999999999888653
No 30
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.90 E-value=1.3e-08 Score=89.86 Aligned_cols=145 Identities=23% Similarity=0.352 Sum_probs=111.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHH----hcCCCCCceeHHHHHHHHHhhCCC
Q 025241 67 FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDL----FDEKKNGVIEFEEFVRALSIFHPS 142 (255)
Q Consensus 67 ~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~----~d~~~~G~I~f~Ef~~~~~~~~~~ 142 (255)
|+.+....++..|..+|++ +||.|+.+++...-.+.. ..-.++|+|.. .-...+|+++|++|+-++..+. .
T Consensus 272 FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~d~tl--t~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~ 346 (493)
T KOG2562|consen 272 FSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYGDHTL--TERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-D 346 (493)
T ss_pred eeHHHHHHHHHHHhhhccc--cccccCHHHHHHHhccch--hhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-c
Confidence 4666666777889999995 999999999987554322 24568999993 3445689999999999998876 5
Q ss_pred CChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 025241 143 TPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESG-MHLSDESLKAIIDKTFADADADGDGKINREEWKSF 216 (255)
Q Consensus 143 ~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g-~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~ 216 (255)
.....-++..|+.+|.+|+|.|+..|+.-+....++.+- ....+--++.++.+++..+-+...|+|+.++|++.
T Consensus 347 k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~s 421 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKGS 421 (493)
T ss_pred CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhhc
Confidence 566788999999999999999999999988776654432 12222234556666667888788999999999983
No 31
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=2.8e-08 Score=75.95 Aligned_cols=103 Identities=28% Similarity=0.352 Sum_probs=85.6
Q ss_pred hHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHH
Q 025241 110 LFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESL 189 (255)
Q Consensus 110 ~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~ 189 (255)
..++..|..+|.+++|.|+++|+...+..+. ..+..+++..+..-+|++|.|.|++++|++++...+.+. -+.++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralG-FE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~---dt~eE- 107 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALG-FEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER---DTKEE- 107 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcC-CCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc---CcHHH-
Confidence 3478899999999999999999987777765 567788999999999999999999999999976543332 24443
Q ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 190 KAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 190 ~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
+..+|+.+|.|++|+|++.+|..+....
T Consensus 108 ---i~~afrl~D~D~~Gkis~~~lkrvakeL 135 (172)
T KOG0028|consen 108 ---IKKAFRLFDDDKTGKISQRNLKRVAKEL 135 (172)
T ss_pred ---HHHHHHcccccCCCCcCHHHHHHHHHHh
Confidence 4567789999999999999999988763
No 32
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.88 E-value=5e-09 Score=69.77 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHhhCCCC---ChHHHHHHHHHHcCCCCCCCcCHHHHHHH
Q 025241 113 DRVFDLFDEKKNGVIEFEEFVRALSIFHPST---PLEDKIDFAFRLYDLRETGCIEPEQVRQM 172 (255)
Q Consensus 113 ~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~---~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~ 172 (255)
+++|+.+|.+++|.|+.+|+..++..+.... ...+.++.+|+.+|.|++|.|+++||..+
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 3444444444444444444444444433110 11223334455555555555555555443
No 33
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.87 E-value=1.7e-08 Score=71.32 Aligned_cols=69 Identities=16% Similarity=0.303 Sum_probs=56.7
Q ss_pred HHHHHHHHHcCC-CC-CCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 147 DKIDFAFRLYDL-RE-TGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 147 ~~~~~~F~~~D~-d~-dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
..+-.+|..||. +| +|+|+.+||+.++.. ....|.+++++++++++ +..|.|++|+|+|+||+.++...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~-~~~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQK-ELTIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHH-HHhcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHHH
Confidence 346678999997 77 899999999999643 12368889999888877 58899999999999999988653
No 34
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.86 E-value=8.1e-09 Score=87.21 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=122.0
Q ss_pred CCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHH
Q 025241 52 RYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEE 131 (255)
Q Consensus 52 ~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~E 131 (255)
..+.-++.++....++....+..=...+....+. -+.+.|.-.||..-++ ....+.+..+|..||.+++|.++|.|
T Consensus 205 ~a~l~eF~~~~r~lkL~~~gl~k~ld~y~~var~-~kg~~igi~efa~~l~---vpvsd~l~~~f~LFde~~tg~~D~re 280 (412)
T KOG4666|consen 205 SASLPEFVAKRRVLKLPLVGLIKKLDGYVYVARE-AKGPDIGIVEFAVNLR---VPVSDKLAPTFMLFDEGTTGNGDYRE 280 (412)
T ss_pred ccchHHHHHHHhccCCChHHHHHHHhhHHHHHHh-ccCCCcceeEeeeeee---cchhhhhhhhhheecCCCCCcccHHH
Confidence 3445666677767777666655433434333332 1677888888765444 22235578899999999999999999
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHH
Q 025241 132 FVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINRE 211 (255)
Q Consensus 132 f~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~ 211 (255)
.+..+..++......+.++.+|+.|+.+.||.+...+|.-+++..+...-.. +-.+|...++..+|+|++.
T Consensus 281 ~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~---------v~~lf~~i~q~d~~ki~~~ 351 (412)
T KOG4666|consen 281 TVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLR---------VPVLFPSIEQKDDPKIYAS 351 (412)
T ss_pred HhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceee---------ccccchhhhcccCcceeHH
Confidence 9999999987777889999999999999999999999988865543222121 3455678999999999999
Q ss_pred HHHHHHHhChhhhhcc
Q 025241 212 EWKSFALSHPTLLKNM 227 (255)
Q Consensus 212 EF~~~l~~~~~~~~~~ 227 (255)
+|.++...+|.+....
T Consensus 352 ~f~~fa~~~p~~a~~~ 367 (412)
T KOG4666|consen 352 NFRKFAATEPNLALSE 367 (412)
T ss_pred HHHHHHHhCchhhhhh
Confidence 9999999999988443
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.85 E-value=2.9e-08 Score=92.98 Aligned_cols=120 Identities=18% Similarity=0.208 Sum_probs=86.4
Q ss_pred CCcccHHHHHHHHhc----cCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHH---HHHHHHHcCCCCC
Q 025241 89 DGLIHKEELRLALLK----TTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDK---IDFAFRLYDLRET 161 (255)
Q Consensus 89 ~G~is~~e~~~~l~~----~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~---~~~~F~~~D~d~d 161 (255)
...++.+++...... +.......+.+.|..+|.|++|.+ +..++..+....+.+++ ++.+|+.+|.|++
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~Dgd 193 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDED 193 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCC
Confidence 345677777654322 112223568889999999999987 44444444312344444 7999999999999
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 162 GCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 162 G~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
|.|+++||..++.. .+...++++ +..+|+.+|.|++|.|+++||..++...
T Consensus 194 G~IdfdEFl~lL~~----lg~~~seEE----L~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 194 GQLSFSEFSDLIKA----FGNLVAANK----KEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CeEcHHHHHHHHHH----hccCCCHHH----HHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999999643 454455554 4566689999999999999999998774
No 36
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.83 E-value=2e-08 Score=70.86 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc-cCCC-ch-hHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 70 NEVEALYELFKELSSSLIDDGLIHKEELRLALLK-TTSG-EN-LFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~-~~~~-~~-~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
..+..+..+|+.+|.. +++|+|+..||+.++.. ++.. .. ..++.+++..|.|++|.|+|+||+..+..+
T Consensus 5 ~ai~~l~~~F~~fd~~-~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 5 KAIETLVSNFHKASVK-GGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHhCC-CCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4567788888888882 38999999999999987 6632 23 578899999999999999999998888765
No 37
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.80 E-value=1e-07 Score=76.45 Aligned_cols=119 Identities=19% Similarity=0.204 Sum_probs=89.0
Q ss_pred CCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCc-ccHHHHHHHHhccCCC-ch-hHHHHHHHHhcCCCCC
Q 025241 49 PKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGL-IHKEELRLALLKTTSG-EN-LFLDRVFDLFDEKKNG 125 (255)
Q Consensus 49 ~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~-is~~e~~~~l~~~~~~-~~-~~~~~lf~~~d~~~~G 125 (255)
..+.++.+++..+.... ...-..++...| +.+ ++|. |+.++|..++..+-.. .. ..++-+|+.+|.+++|
T Consensus 47 ~~g~lt~eef~~i~~~~--~Np~~~rI~~~f---~~~--~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G 119 (187)
T KOG0034|consen 47 GDGYLTKEEFLSIPELA--LNPLADRIIDRF---DTD--GNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDG 119 (187)
T ss_pred ccCccCHHHHHHHHHHh--cCcHHHHHHHHH---hcc--CCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCC
Confidence 45689999999876322 112334444444 443 6666 9999999988875433 22 3678899999999999
Q ss_pred ceeHHHHHHHHHhhCCCCCh------HHHHHHHHHHcCCCCCCCcCHHHHHHHHH
Q 025241 126 VIEFEEFVRALSIFHPSTPL------EDKIDFAFRLYDLRETGCIEPEQVRQMVV 174 (255)
Q Consensus 126 ~I~f~Ef~~~~~~~~~~~~~------~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~ 174 (255)
.|+.+|+...+..+...... .+.+...|..+|.|+||.|+++|+.+++.
T Consensus 120 ~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 120 FISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred cCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 99999999999887643333 34456789999999999999999999863
No 38
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.79 E-value=4.7e-08 Score=69.01 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCC--CCCCCcCHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 146 EDKIDFAFRLYDL--RETGCIEPEQVRQMVVATLQE-SGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 146 ~~~~~~~F~~~D~--d~dG~I~~~Ef~~~l~~~~~~-~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
.+.++.+|..||+ +++|.|+.+||..+++..+.. .+..++.+++++++ ..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~----~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM----KDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH----HHhccCCCCcCcHHHHHHHHHHH
Confidence 3568889999999 899999999999997542221 12334566666665 68999999999999999988754
No 39
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.78 E-value=2.9e-08 Score=66.00 Aligned_cols=62 Identities=32% Similarity=0.406 Sum_probs=50.0
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhCh
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHP 221 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~ 221 (255)
+.+|+.+|++++|.|+.+|+..++.. .| .+++++++++ +.+|.+++|.|+++||+.++...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~----~g--~~~~~~~~i~----~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK----SG--LPRSVLAQIW----DLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH----cC--CCHHHHHHHH----HHhcCCCCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999543 34 3555555554 689999999999999999886543
No 40
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.78 E-value=2.7e-07 Score=90.80 Aligned_cols=142 Identities=15% Similarity=0.270 Sum_probs=118.5
Q ss_pred hcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc--------hhHHHHHHHHhcCCCCCceeHHHHHH
Q 025241 63 NNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE--------NLFLDRVFDLFDEKKNGVIEFEEFVR 134 (255)
Q Consensus 63 ~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~--------~~~~~~lf~~~d~~~~G~I~f~Ef~~ 134 (255)
..+..|++.++.+.-+|+.||++ ++|.++..+|+.+|+.+|... .|..++++..+|++.+|+|+..+|..
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDke--k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKE--KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchh--hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 45778999999999999999997 999999999999999876432 45899999999999999999999999
Q ss_pred HHHhhC-CCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC----CCCCcC
Q 025241 135 ALSIFH-PSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADAD----GDGKIN 209 (255)
Q Consensus 135 ~~~~~~-~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~----~dG~Is 209 (255)
++..-. .+..+.++++.+|+.+|. |..+|+..++... +++++++-++..+-..+++. ..+.+.
T Consensus 2321 fmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~~~~-----------ltreqaefc~s~m~~~~e~~~~~s~q~~l~ 2388 (2399)
T KOG0040|consen 2321 FMISKETENILSSEEIEDAFRALDA-GKPYVTKEELYQN-----------LTREQAEFCMSKMKPYAETSSGRSDQVALD 2388 (2399)
T ss_pred HHHhcccccccchHHHHHHHHHhhc-CCccccHHHHHhc-----------CCHHHHHHHHHHhhhhcccccCCCcccccc
Confidence 987643 334567799999999999 7789999998764 67778877887777777764 335699
Q ss_pred HHHHHHHHH
Q 025241 210 REEWKSFAL 218 (255)
Q Consensus 210 ~~EF~~~l~ 218 (255)
|.+|++.+.
T Consensus 2389 y~dfv~sl~ 2397 (2399)
T KOG0040|consen 2389 YKDFVNSLF 2397 (2399)
T ss_pred HHHHHHHHh
Confidence 999988764
No 41
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.78 E-value=3.5e-08 Score=73.08 Aligned_cols=63 Identities=21% Similarity=0.358 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 146 EDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 146 ~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
...+..+|..+|.|+||.|+.+|+..+. . ... +..+..+|+.+|.|+||.||++||..++.+.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~------l--~~~----e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~~ 109 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR------L--DPN----EHCIKPFFESCDLDKDGSISLDEWCYCFIKE 109 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH------c--cch----HHHHHHHHHHHCCCCCCCCCHHHHHHHHhCh
Confidence 4689999999999999999999999872 1 122 3345666789999999999999999999543
No 42
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.77 E-value=4.6e-08 Score=70.27 Aligned_cols=84 Identities=23% Similarity=0.330 Sum_probs=61.3
Q ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhh
Q 025241 146 EDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLK 225 (255)
Q Consensus 146 ~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~ 225 (255)
...++.+|+.+|++++|.|+.+|++.+++. .| ++++++++++ ..+|.+++|.|+++||+.++....-...
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~----~~--~~~~ev~~i~----~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLK----SG--LPQTLLAKIW----NLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHH----cC--CCHHHHHHHH----HHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 356889999999999999999999999643 33 5666665555 6899999999999999998865433222
Q ss_pred ccCCCccccccccCCccccc
Q 025241 226 NMTLPFLKDMTTVFPSFIFN 245 (255)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~ 245 (255)
-..+..-+|.++.+
T Consensus 79 ------g~~~~~~~~~~~~~ 92 (96)
T smart00027 79 ------GYPIPASLPPSLIP 92 (96)
T ss_pred ------CCCCCccCCHhhcC
Confidence 22334445555544
No 43
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.76 E-value=5.8e-08 Score=68.65 Aligned_cols=70 Identities=10% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHHHH-cCCCCCC-CcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 147 DKIDFAFRL-YDLRETG-CIEPEQVRQMVVATLQES-GMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 147 ~~~~~~F~~-~D~d~dG-~I~~~Ef~~~l~~~~~~~-g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
..+..+|+. +|++|+| .|+.+||+.++...+... +...++.++++++ +.+|.|+||.|+|+||+.++...
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 567788998 7888986 999999999976644322 3345566666666 68999999999999999988653
No 44
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.75 E-value=7.7e-08 Score=69.11 Aligned_cols=70 Identities=20% Similarity=0.435 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 67 FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 67 ~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
++.+++..+...|..+|.+ ++|.|+.++++.+++..+. ....+.+++..+|.+++|.|+|+||+.++..+
T Consensus 4 ls~~~~~~l~~~F~~~D~d--~~G~Is~~el~~~l~~~~~-~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKN--QDGTVTGAQAKPILLKSGL-PQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCHHHHHHHHHHHHHhCCC--CCCeEeHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 4667777888888888875 7888888888887776543 23456777777777777777777777766543
No 45
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.73 E-value=8e-08 Score=68.60 Aligned_cols=70 Identities=23% Similarity=0.464 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCC-cccHHHHHHHHhc-cC-----CCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhC
Q 025241 70 NEVEALYELFKELSSSLIDDG-LIHKEELRLALLK-TT-----SGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFH 140 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~~G-~is~~e~~~~l~~-~~-----~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~ 140 (255)
..+..+..+|+.+|.. |++| +|+..||+.++.. ++ ......+..+++.+|.|++|.|+|+||+.++..+.
T Consensus 7 ~a~~~~~~~F~~~dd~-dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 7 GAMDTLIRIFHNYSGK-EGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 4567788888888832 4887 5999999999865 22 12345789999999999999999999999887653
No 46
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.70 E-value=1.1e-07 Score=67.02 Aligned_cols=68 Identities=22% Similarity=0.417 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhc-CCCCCCC-cccHHHHHHHHhc-----cCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 70 NEVEALYELFKELS-SSLIDDG-LIHKEELRLALLK-----TTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 70 ~~i~~l~~~F~~~d-~~~d~~G-~is~~e~~~~l~~-----~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
..+..+..+|+.+| .+ ++| .|+..||+.+|+. ++... ...+.++++..|.|++|.|+|+||+.++..+
T Consensus 5 ~~~~~l~~aF~~fD~~d--gdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 5 KAMVALIDVFHQYSGRE--GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHHhcccC--CCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45667788888887 54 888 5999999998887 55443 3558888888899888999999998877654
No 47
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.69 E-value=1.7e-07 Score=74.28 Aligned_cols=111 Identities=20% Similarity=0.264 Sum_probs=88.9
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 025241 60 RLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSI 138 (255)
Q Consensus 60 ~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~ 138 (255)
-+.+...|+.++|+.++..|..+|.. .||+|+..|++.+|.+++..+ +.-++.++..+|.|.+|+|+|.||+.++..
T Consensus 86 ~yteF~eFsrkqIk~~~~~Fk~yDe~--rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 86 VYTEFSEFSRKQIKDAESMFKQYDED--RDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhccc--ccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 34455577899999999999999985 999999999999999998765 456899999999999999999999999877
Q ss_pred hCCCCChHHHHHHH---HHHcCCCCCCCcCHHHHHHH
Q 025241 139 FHPSTPLEDKIDFA---FRLYDLRETGCIEPEQVRQM 172 (255)
Q Consensus 139 ~~~~~~~~~~~~~~---F~~~D~d~dG~I~~~Ef~~~ 172 (255)
........+..... ....|....|+.....|-.+
T Consensus 164 aaagEL~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 164 AAAGELQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred HhccccccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 65433333222222 23479999999998888776
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.65 E-value=8.6e-08 Score=61.14 Aligned_cols=52 Identities=31% Similarity=0.541 Sum_probs=44.2
Q ss_pred CCCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 160 ETGCIEPEQVRQMVVATLQESGMH-LSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 160 ~dG~I~~~Ef~~~l~~~~~~~g~~-~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.+|.|+.+||+.++ ...|.. +++++++.++ ..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l----~~~g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRAL----SKLGIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHH----HHTTSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHH----HHhCCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999994 455878 9998876666 5999999999999999998753
No 49
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.60 E-value=2.5e-07 Score=59.66 Aligned_cols=61 Identities=33% Similarity=0.593 Sum_probs=50.4
Q ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 025241 149 IDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFA 217 (255)
Q Consensus 149 ~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l 217 (255)
+..+|+.+|.+++|.|+.+|+..++ ...+...+.+.+.. +|+.+|.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l----~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAAL----KSLGEGLSEEEIDE----MIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHH----HHhCCCCCHHHHHH----HHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999995 44566777665544 5578999999999999998765
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.59 E-value=2.8e-07 Score=65.04 Aligned_cols=69 Identities=22% Similarity=0.420 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHhhcC--CCCCCCcccHHHHHHHHhc-cCCC-----chhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 69 INEVEALYELFKELSS--SLIDDGLIHKEELRLALLK-TTSG-----ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 69 ~~~i~~l~~~F~~~d~--~~d~~G~is~~e~~~~l~~-~~~~-----~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
+++++.+...|..+|+ + ++|.|+..++..+++. ++.. ....+..++..+|.+++|.|+|++|+.++...
T Consensus 4 ~~~~~~l~~~F~~~D~~~~--~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEG--DKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHHhhccC--CCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 3567778888888888 6 8899999999988864 3321 24568888889999888999999998877654
No 51
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.56 E-value=5.3e-07 Score=63.60 Aligned_cols=69 Identities=20% Similarity=0.374 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcCCCCC-CCcccHHHHHHHHhc---cCCC-chhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 70 NEVEALYELFKELSSSLID-DGLIHKEELRLALLK---TTSG-ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~-~G~is~~e~~~~l~~---~~~~-~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
+.+..+-..|++++.. ++ +|+|+..||+.++.. ++.. ....+.++++..|.|++|.|+|+||+..+..+
T Consensus 7 ~~~~~~i~~F~~y~~~-~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 7 QAIGLLVAIFHKYSGR-EGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHHHcc-CCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5667788888888873 24 789999999999963 3433 35678999999999999999999999888765
No 52
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.56 E-value=3.6e-07 Score=60.63 Aligned_cols=58 Identities=34% Similarity=0.546 Sum_probs=36.1
Q ss_pred HHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 025241 77 ELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALS 137 (255)
Q Consensus 77 ~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~ 137 (255)
..|..+|++ ++|.|+.+|++.++...+. ....+++++..+|.+++|.|+|+||+..+.
T Consensus 3 ~~F~~~D~~--~~G~i~~~el~~~l~~~g~-~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 3 QIFRSLDPD--GDGLISGDEARPFLGKSGL-PRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred HHHHHhCCC--CCCcCcHHHHHHHHHHcCC-CHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 455666654 6667777777666665543 334566666666666666666666666554
No 53
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.52 E-value=7.4e-07 Score=62.99 Aligned_cols=68 Identities=21% Similarity=0.377 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHh-hcCCCCCCC-cccHHHHHHHHhccC------CCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 70 NEVEALYELFKE-LSSSLIDDG-LIHKEELRLALLKTT------SGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 70 ~~i~~l~~~F~~-~d~~~d~~G-~is~~e~~~~l~~~~------~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
..+..+...|+. .+.+ ++| +|+..||+.++.... ......+..+++.+|.|++|.|+|+||+..+..+
T Consensus 6 ~~i~~l~~~F~~y~~~d--g~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 6 RCIESLIAVFQKYAGKD--GDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHHHhccC--CCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 567788899999 5453 655 999999999987631 1123578899999999999999999999887655
No 54
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.52 E-value=4.6e-07 Score=64.52 Aligned_cols=68 Identities=25% Similarity=0.440 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhc-CCCCCCC-cccHHHHHHHHhc-cCC----C-chhHHHHHHHHhcCCCCCceeHHHHHHHHHhhC
Q 025241 71 EVEALYELFKELS-SSLIDDG-LIHKEELRLALLK-TTS----G-ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFH 140 (255)
Q Consensus 71 ~i~~l~~~F~~~d-~~~d~~G-~is~~e~~~~l~~-~~~----~-~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~ 140 (255)
.+..+.+.|+.+| .+ ++| .|+..|++.+++. ++. . ....++++++.+|.+++|.|+|+||+.++..+.
T Consensus 7 ~~~~l~~~F~~fDd~d--g~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKE--GDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhccc--CCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3456777788886 64 888 4999999888864 321 1 345688888888888888888888888776543
No 55
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.50 E-value=4.7e-07 Score=57.67 Aligned_cols=49 Identities=39% Similarity=0.587 Sum_probs=29.9
Q ss_pred CCcccHHHHHHHHhccCCC-c-hhHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 025241 89 DGLIHKEELRLALLKTTSG-E-NLFLDRVFDLFDEKKNGVIEFEEFVRALS 137 (255)
Q Consensus 89 ~G~is~~e~~~~l~~~~~~-~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~ 137 (255)
+|.|+.++|+.++..++.. . ...+..+|..+|.+++|.|+|+||+.++.
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 5666666666666544443 2 34566666666666666666666666554
No 56
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.48 E-value=3.1e-06 Score=63.37 Aligned_cols=105 Identities=16% Similarity=0.147 Sum_probs=86.3
Q ss_pred hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCC--CCCCcCHHHHHHHHHHHHHhcCCCCCH
Q 025241 109 NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLR--ETGCIEPEQVRQMVVATLQESGMHLSD 186 (255)
Q Consensus 109 ~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d--~dG~I~~~Ef~~~l~~~~~~~g~~~~~ 186 (255)
...++.+|..||..+||+|++.+.-.++..+. ..|...++.+....++.+ +--.|++++|..++..+.. .....+-
T Consensus 10 ~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG-~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak-nk~q~t~ 87 (152)
T KOG0030|consen 10 MEEFKEAFLLFDRTGDGKISGSQVGDVLRALG-QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK-NKDQGTY 87 (152)
T ss_pred HHHHHHHHHHHhccCcccccHHHHHHHHHHhc-CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh-ccccCcH
Confidence 46789999999999999999999999999887 668889999999999887 5568999999999766433 3334444
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 187 ESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 187 ~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
++.-+-+ +.||++++|.|...|+.+++..
T Consensus 88 edfvegL----rvFDkeg~G~i~~aeLRhvLtt 116 (152)
T KOG0030|consen 88 EDFVEGL----RVFDKEGNGTIMGAELRHVLTT 116 (152)
T ss_pred HHHHHHH----HhhcccCCcceeHHHHHHHHHH
Confidence 4444444 5899999999999999999876
No 57
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.48 E-value=9.4e-07 Score=63.19 Aligned_cols=67 Identities=21% Similarity=0.448 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcC-CCCC-CCcccHHHHHHHHhc-c----CCC-chhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 71 EVEALYELFKELSS-SLID-DGLIHKEELRLALLK-T----TSG-ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 71 ~i~~l~~~F~~~d~-~~d~-~G~is~~e~~~~l~~-~----~~~-~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
.+..+...|..+|. + + +|+|+..|++.++.. + +.. ....++.+++.+|.+++|.|+|+||+.++...
T Consensus 6 ~~~~l~~~F~~~D~~d--g~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 6 AMESLILTFHRYAGKD--GDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHHhccC--CCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 34556677777765 4 5 588888888887764 2 222 23567778888888888888888887776543
No 58
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.47 E-value=5.8e-07 Score=73.45 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=96.4
Q ss_pred HHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccC-CC---chhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCCh--
Q 025241 72 VEALYELFKELSSSLIDDGLIHKEELRLALLKTT-SG---ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPL-- 145 (255)
Q Consensus 72 i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~-~~---~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~-- 145 (255)
.+.+..+|.+.|-| .||+|+..|+++.+..-. .. .....+..|+..|.|++|.|+|+||..-+.......-.
T Consensus 100 rrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghsekev 177 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKEV 177 (362)
T ss_pred HHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHHH
Confidence 45678899999987 899999999998875421 11 12345668899999999999999998877654321100
Q ss_pred -----------HHHHHHHHHHcCCCCCCCcCH---------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCC
Q 025241 146 -----------EDKIDFAFRLYDLRETGCIEP---------EQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGD 205 (255)
Q Consensus 146 -----------~~~~~~~F~~~D~d~dG~I~~---------~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~d 205 (255)
-++-.+.|..-+++..|.... .||..++ .+..+..-+..+++.+...+|+|+|
T Consensus 178 adairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL-------HPEhSrgmLrfmVkeivrdlDqdgD 250 (362)
T KOG4251|consen 178 ADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL-------HPEHSRGMLRFMVKEIVRDLDQDGD 250 (362)
T ss_pred HHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc-------ChHhhhhhHHHHHHHHHHHhccCCC
Confidence 112233455555666665554 7887774 3334555677788888889999999
Q ss_pred CCcCHHHHHHHH
Q 025241 206 GKINREEWKSFA 217 (255)
Q Consensus 206 G~Is~~EF~~~l 217 (255)
.++|..||+...
T Consensus 251 kqlSvpeFislp 262 (362)
T KOG4251|consen 251 KQLSVPEFISLP 262 (362)
T ss_pred eeecchhhhcCC
Confidence 999999998654
No 59
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.47 E-value=2.5e-06 Score=74.70 Aligned_cols=96 Identities=17% Similarity=0.336 Sum_probs=82.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLK 190 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~ 190 (255)
.++.+|..+|.+++|.|+..+....+..+....+..+-...+|+..|.|.||.++++||++.+.. -+
T Consensus 15 r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~-------------~E 81 (463)
T KOG0036|consen 15 RIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN-------------KE 81 (463)
T ss_pred HHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH-------------hH
Confidence 47899999999999999999999998888744467788999999999999999999999998522 12
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 191 AIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 191 ~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.-+..+|+.+|.+.||.|+.+|...+++.
T Consensus 82 ~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 82 LELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred HHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 23567889999999999999999888765
No 60
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.44 E-value=1.4e-06 Score=56.05 Aligned_cols=60 Identities=30% Similarity=0.408 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHH
Q 025241 112 LDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQM 172 (255)
Q Consensus 112 ~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~ 172 (255)
+..+|..+|.+++|.|++++|..++..+. .....+.+..+|+.+|.+++|.|+++||..+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~ 61 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG-EGLSEEEIDEMIREVDKDGDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC-CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHH
Confidence 34566666666666666666666665553 3344556666666666666666776666554
No 61
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.39 E-value=1.5e-06 Score=61.34 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCC--CCCCcCHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 147 DKIDFAFRLYDLR--ETGCIEPEQVRQMVVATLQESGMHLS----DESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 147 ~~~~~~F~~~D~d--~dG~I~~~Ef~~~l~~~~~~~g~~~~----~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
..+...|+.|+.. ++|.|+.+||+.++.. ..+..++ +.++++++ +.+|.|++|.|+|+||+.++...
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~---~~g~~~t~~~~~~~v~~i~----~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEK---ELPNFLKKEKNQKAIDKIF----EDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHH---HhhHhhccCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 4567789999855 4899999999999753 3333344 55555555 68999999999999999988653
No 62
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.36 E-value=5.6e-06 Score=73.93 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc-cCCC-chhHHHHHHHH-hcCCCCCceeHHHHHHHHHhhCCCCC
Q 025241 68 TINEVEALYELFKELSSSLIDDGLIHKEELRLALLK-TTSG-ENLFLDRVFDL-FDEKKNGVIEFEEFVRALSIFHPSTP 144 (255)
Q Consensus 68 s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~-~~~~-~~~~~~~lf~~-~d~~~~G~I~f~Ef~~~~~~~~~~~~ 144 (255)
.++++..++..|...+.+ +..+++.++|....-. .+.. .++.+.++... .|..+||-|+|+||..+-..+| .
T Consensus 31 ~~~eLr~if~~~as~e~~--ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC---~ 105 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKN--GESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC---A 105 (694)
T ss_pred ChHHHHHHHHHHhHHhhc--cccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc---C
Confidence 346677777777777765 7889999999765433 3332 34555555554 5677899999999999988877 4
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCC-------------------CCHHH--------HHHHHHHHH
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMH-------------------LSDES--------LKAIIDKTF 197 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~-------------------~~~~~--------~~~~~~~~f 197 (255)
++.....+|+.||+.++|.++.+++..++.........+ ++-.+ ..|-.+++|
T Consensus 106 pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qaf 185 (694)
T KOG0751|consen 106 PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQLEHAEQAF 185 (694)
T ss_pred chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999865431111111 11111 334567788
Q ss_pred HHhcCCCCCCcCHHHHHHHHHh
Q 025241 198 ADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 198 ~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
++-|..++|.||--+|..++..
T Consensus 186 r~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 186 REKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHhcccCCCeeeeechHhhhhh
Confidence 8899999999999999887765
No 63
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.35 E-value=4e-07 Score=50.18 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=18.3
Q ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHH
Q 025241 148 KIDFAFRLYDLRETGCIEPEQVRQMVV 174 (255)
Q Consensus 148 ~~~~~F~~~D~d~dG~I~~~Ef~~~l~ 174 (255)
+++.+|+.||+||||.|+++||..+++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 356677777777777777777777643
No 64
>PF14658 EF-hand_9: EF-hand domain
Probab=98.33 E-value=2.2e-06 Score=56.33 Aligned_cols=61 Identities=20% Similarity=0.349 Sum_probs=52.5
Q ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhcCCCC-CCcCHHHHHHHHHh
Q 025241 151 FAFRLYDLRETGCIEPEQVRQMVVATLQESGM-HLSDESLKAIIDKTFADADADGD-GKINREEWKSFALS 219 (255)
Q Consensus 151 ~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D~~~d-G~Is~~EF~~~l~~ 219 (255)
.+|.+||.++.|.|...++...|++ .+. .+++.+++++. +++|+++. |.|+++.|..+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra----~~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRA----VTGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHH----HcCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999644 344 78888888888 48999988 99999999999864
No 65
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.33 E-value=6.9e-06 Score=72.40 Aligned_cols=130 Identities=20% Similarity=0.382 Sum_probs=90.5
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHhc------cCC--------Cc--hhHHHH--HHHHhcCCCCCceeHHHHHHHHH
Q 025241 76 YELFKELSSSLIDDGLIHKEELRLALLK------TTS--------GE--NLFLDR--VFDLFDEKKNGVIEFEEFVRALS 137 (255)
Q Consensus 76 ~~~F~~~d~~~d~~G~is~~e~~~~l~~------~~~--------~~--~~~~~~--lf~~~d~~~~G~I~f~Ef~~~~~ 137 (255)
.-+|..+|.+ +||-|+.+||.....- ++. +. ...+.. ...-|..+++|.++++||+.++.
T Consensus 236 ~IAFKMFD~d--gnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e 313 (489)
T KOG2643|consen 236 RIAFKMFDLD--GNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQE 313 (489)
T ss_pred eeeeeeeecC--CCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHH
Confidence 3457777875 9999999999876421 111 10 111222 23346888999999999999998
Q ss_pred hhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 025241 138 IFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFA 217 (255)
Q Consensus 138 ~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l 217 (255)
.+. .+-++.-|..+|+..+|.|+..+|..++ +...+.+.... +.+++.+-+.++.++. .||++||..+.
T Consensus 314 ~Lq-----~Eil~lEF~~~~~~~~g~Ise~DFA~~l---L~~a~~n~~~k--~~~lkrvk~kf~~~~~-gISl~Ef~~Ff 382 (489)
T KOG2643|consen 314 NLQ-----EEILELEFERFDKGDSGAISEVDFAELL---LAYAGVNSKKK--HKYLKRVKEKFKDDGK-GISLQEFKAFF 382 (489)
T ss_pred HHH-----HHHHHHHHHHhCcccccccCHHHHHHHH---HHHcccchHhH--HHHHHHHHHhccCCCC-CcCHHHHHHHH
Confidence 774 4667778999999999999999999986 44444443332 3345555567776644 49999999875
Q ss_pred H
Q 025241 218 L 218 (255)
Q Consensus 218 ~ 218 (255)
.
T Consensus 383 ~ 383 (489)
T KOG2643|consen 383 R 383 (489)
T ss_pred H
Confidence 4
No 66
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.32 E-value=3.2e-06 Score=59.67 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc-cCCCc-----hhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 70 NEVEALYELFKELSSSLIDDGLIHKEELRLALLK-TTSGE-----NLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~-~~~~~-----~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
+.+..+...|+.++..-+++|.|+..||+.++.. ++... ...+..+|+.+|.+++|.|+|+||+.++..+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4677788889998864124689999999998863 33211 4568888888888888999999988877654
No 67
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.30 E-value=4e-06 Score=62.12 Aligned_cols=57 Identities=21% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHH
Q 025241 112 LDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 112 ~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
+...|..+|.|++|.|+.+|+..+. + ...+..+...|+.+|.|+||.||++||...+
T Consensus 50 l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 50 VGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4555555555555555555555443 1 1233444555555555555555555555544
No 68
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.24 E-value=1.3e-06 Score=48.08 Aligned_cols=27 Identities=41% Similarity=0.717 Sum_probs=23.9
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 193 IDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 193 ~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
++.+|+.+|.|+||+|+++||..++.+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 356788999999999999999999865
No 69
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.23 E-value=1.2e-05 Score=56.65 Aligned_cols=68 Identities=13% Similarity=0.410 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc-cC-----CCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhC
Q 025241 70 NEVEALYELFKELSSSLIDDGLIHKEELRLALLK-TT-----SGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFH 140 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~-~~-----~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~ 140 (255)
..+..+...|+++.. +.+.++..||+.++.. ++ ......+.+++...|.|+||.|+|+||+.++..+.
T Consensus 5 ~ai~~lI~~FhkYaG---~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 5 HSMEKMMLTFHKFAG---EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHHHHHHcC---CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 456778889999985 5779999999999865 32 12345799999999999999999999999988764
No 70
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.23 E-value=9.4e-06 Score=72.47 Aligned_cols=103 Identities=22% Similarity=0.274 Sum_probs=67.3
Q ss_pred ccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHH-HHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHH
Q 025241 92 IHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRA-LSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVR 170 (255)
Q Consensus 92 is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~-~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~ 170 (255)
++..+|+..++. +......+.+-.+.|..+ ....++++.- +..+.........++.+|+.+|.||||.|+.+||.
T Consensus 282 ~~e~~f~~~~~~-~~ma~ekl~egi~~F~~d---~~~L~~~i~~~~~~~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~ 357 (391)
T PRK12309 282 MDRATFDKMHAE-DRMASEKLDEGIKGFSKA---LETLEKLLAHRLARLEGGEAFTHAAQEIFRLYDLDGDGFITREEWL 357 (391)
T ss_pred CCHHHHHHHhcc-CchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccChhhHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 455666655542 111122333344444332 2334444442 22244455667889999999999999999999994
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 171 QMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 171 ~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
. .+.+|..+|.|+||.|+++||...+..
T Consensus 358 ~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 358 G---------------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred H---------------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 2 256678999999999999999998753
No 71
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.21 E-value=1.3e-05 Score=61.21 Aligned_cols=97 Identities=20% Similarity=0.343 Sum_probs=78.3
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLK 190 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~ 190 (255)
+.++.|..+|.|+||.|+.+++...+..+.+. .+++++..+++ ...|.|++--|..++ .+.-...++ +
T Consensus 33 EfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~----Ea~gPINft~FLTmf----GekL~gtdp---e 100 (171)
T KOG0031|consen 33 EFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMK----EAPGPINFTVFLTMF----GEKLNGTDP---E 100 (171)
T ss_pred HHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHH----hCCCCeeHHHHHHHH----HHHhcCCCH---H
Confidence 47889999999999999999999999998754 67788887776 456899999888874 222122233 4
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 191 AIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 191 ~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
+.+-.+|+.||.++.|.|.-+.+..+|..
T Consensus 101 ~~I~~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 101 EVILNAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHHHHHHhcCccCCCccCHHHHHHHHHH
Confidence 56778999999999999999999999976
No 72
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.17 E-value=8.7e-06 Score=64.68 Aligned_cols=65 Identities=25% Similarity=0.399 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 147 DKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 147 ~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
..+..+|+.||.+.||+|++.|++.+| ..+|.+-+.--+..++ ++.|.|.||+|||-||+-+...
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mm----EKLgapQTHL~lK~mi----keVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMM----EKLGAPQTHLGLKNMI----KEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHH----HHhCCchhhHHHHHHH----HHhhcccccchhHHHHHHHHHH
Confidence 467788999999999999999999884 4456555544455555 5889999999999999877654
No 73
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.17 E-value=7.8e-06 Score=66.96 Aligned_cols=166 Identities=15% Similarity=0.156 Sum_probs=105.1
Q ss_pred CCCCCChhHHHH-HHhcCCCCHHHHH----HHHHHHHhhcCCCCCCCcccHHHHHHHHhcc-CCCch-------------
Q 025241 49 PKLRYTFNDLVR-LANNSPFTINEVE----ALYELFKELSSSLIDDGLIHKEELRLALLKT-TSGEN------------- 109 (255)
Q Consensus 49 ~~~~l~~~~~~~-l~~~~~~s~~~i~----~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~-~~~~~------------- 109 (255)
...+++..++++ +.+.+. +..+ .-...|+..|++ +||.|+++|++--+... +....
T Consensus 114 tDrkisAkEmqrwImekta---EHfqeameeSkthFraVDpd--gDGhvsWdEykvkFlaskghsekevadairlneelk 188 (362)
T KOG4251|consen 114 TDRKISAKEMQRWIMEKTA---EHFQEAMEESKTHFRAVDPD--GDGHVSWDEYKVKFLASKGHSEKEVADAIRLNEELK 188 (362)
T ss_pred ccccccHHHHHHHHHHHHH---HHHHHHHhhhhhheeeeCCC--CCCceehhhhhhHHHhhcCcchHHHHHHhhccCccc
Confidence 345777777664 332221 2222 233457778875 99999999997543221 11100
Q ss_pred -hHHHHHHHHhcCCCCCcee---------HHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHh
Q 025241 110 -LFLDRVFDLFDEKKNGVIE---------FEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQE 179 (255)
Q Consensus 110 -~~~~~lf~~~d~~~~G~I~---------f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~ 179 (255)
..-.+.+..-+.++.|+.+ -+||+.++..-...+....-+..+.+.+|+|||..++..||.........+
T Consensus 189 VDeEtqevlenlkdRwyqaDsppadlllteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVen 268 (362)
T KOG4251|consen 189 VDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVEN 268 (362)
T ss_pred ccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhh
Confidence 1123344444444455444 499999886655444555677888999999999999999998864332222
Q ss_pred -cCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 180 -SGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 180 -~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.|.++.+-.++...+..=..+|.|.||.++++|+..++..
T Consensus 269 qqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~dP 309 (362)
T KOG4251|consen 269 QQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYVDP 309 (362)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhcCc
Confidence 3456666666655555556789999999999999988643
No 74
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.11 E-value=1e-05 Score=58.71 Aligned_cols=70 Identities=24% Similarity=0.457 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
+++++|...+...|...+. ++|.|+..+.+.++.+.++. ...+..+|...|.+++|+++++||+.++...
T Consensus 3 ~ls~~e~~~y~~~F~~l~~---~~g~isg~~a~~~f~~S~L~-~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP---QDGKISGDQAREFFMKSGLP-RDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS---STTEEEHHHHHHHHHHTTSS-HHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC---CCCeEeHHHHHHHHHHcCCC-HHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4566788899999999886 78999999999988876554 3568999999999999999999999988543
No 75
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.07 E-value=2.9e-05 Score=54.60 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=49.8
Q ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 147 DKIDFAFRLYDLRETGCIEPEQVRQMVVATLQES-GMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 147 ~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~-g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
..+...|..|. .+.+.++..||+.++.+-++.. +..-++..+ +.+++..|.|+||.|+|.||+.++..
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~v----d~im~~LD~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAV----DKIMKDLDDCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHH----HHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35567788887 4456999999999987654432 233344444 44557999999999999999988754
No 76
>PF14658 EF-hand_9: EF-hand domain
Probab=98.06 E-value=1.6e-05 Score=52.25 Aligned_cols=60 Identities=18% Similarity=0.338 Sum_probs=36.2
Q ss_pred HHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCC-CCcCHHHHHHHHH
Q 025241 115 VFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRET-GCIEPEQVRQMVV 174 (255)
Q Consensus 115 lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~d-G~I~~~Ef~~~l~ 174 (255)
.|..||.++.|.|.-.+++.++.......+.+.+++.+.+.+|++|. |.|+++.|..+|+
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 45566666666666666666666555335555666666666666655 6666666666543
No 77
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.03 E-value=3e-05 Score=58.63 Aligned_cols=119 Identities=13% Similarity=0.230 Sum_probs=88.3
Q ss_pred CCCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc--hhHHHHHHHHhcCCCCC
Q 025241 48 PPKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE--NLFLDRVFDLFDEKKNG 125 (255)
Q Consensus 48 ~~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~--~~~~~~lf~~~d~~~~G 125 (255)
++...++.+.+.++-+... ..-.+++-.+|.. ||.|.++..+|..++.-+.... ...+...|+.+|-|+++
T Consensus 51 ~~~v~vp~e~i~kMPELke--npfk~ri~e~FSe-----DG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~ 123 (189)
T KOG0038|consen 51 PPIVKVPFELIEKMPELKE--NPFKRRICEVFSE-----DGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDE 123 (189)
T ss_pred CCceeecHHHHhhChhhhc--ChHHHHHHHHhcc-----CCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCC
Confidence 4455777777666543221 1233456666655 3899999999998875443221 23467788999999999
Q ss_pred ceeHHHHHHHHHhhCCCCChHHHHH----HHHHHcCCCCCCCcCHHHHHHHH
Q 025241 126 VIEFEEFVRALSIFHPSTPLEDKID----FAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 126 ~I~f~Ef~~~~~~~~~~~~~~~~~~----~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
.|.-.++...+..+.+.+.+.+++. .+....|.||||.++..||.+++
T Consensus 124 ~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 124 FIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred cccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 9999999999999988887777765 45667799999999999999985
No 78
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.82 E-value=1.7e-05 Score=44.31 Aligned_cols=27 Identities=26% Similarity=0.561 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHH
Q 025241 148 KIDFAFRLYDLRETGCIEPEQVRQMVV 174 (255)
Q Consensus 148 ~~~~~F~~~D~d~dG~I~~~Ef~~~l~ 174 (255)
+++.+|+.+|+|++|.|+.+||.++++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467889999999999999999988864
No 79
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.80 E-value=2.5e-05 Score=41.36 Aligned_cols=24 Identities=42% Similarity=0.750 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHH
Q 025241 194 DKTFADADADGDGKINREEWKSFA 217 (255)
Q Consensus 194 ~~~f~~~D~~~dG~Is~~EF~~~l 217 (255)
+++|+.+|.|+||.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 567889999999999999998854
No 80
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.00015 Score=52.65 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=54.4
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHHH--hcC----CCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATLQ--ESG----MHLSDESLKAIIDKTFADADADGDGKINREEWKSF 216 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~--~~g----~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~ 216 (255)
-.-|++.|-|++|.|.--|+..++.-... ..| +-+++.+++.+++.+.+.-|.|+||.|+|.||++.
T Consensus 70 fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 70 FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34588899999999999999888765443 222 33577799999999999999999999999999864
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.73 E-value=3.2e-05 Score=40.98 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=15.5
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHH
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQM 172 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~ 172 (255)
+.+|+.+|.|+||.|+.+||.++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 45667777777777777777664
No 82
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.71 E-value=0.00064 Score=60.85 Aligned_cols=54 Identities=31% Similarity=0.483 Sum_probs=47.6
Q ss_pred hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHH
Q 025241 109 NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVAT 176 (255)
Q Consensus 109 ~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~ 176 (255)
...+..+|+.+|.+++|.|+.+||+. +..+|+.+|.|+||.|+.+||.+++...
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 45689999999999999999999952 4678999999999999999999987554
No 83
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.69 E-value=0.00043 Score=62.25 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=70.6
Q ss_pred CCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-------hhHHHHHHHHhcC
Q 025241 49 PKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-------NLFLDRVFDLFDE 121 (255)
Q Consensus 49 ~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-------~~~~~~lf~~~d~ 121 (255)
.++-++++|++.+....... +. ....+|+.+|+. ++|.++.+++..++.+..... .+.++. .+..
T Consensus 87 KDglisf~eF~afe~~lC~p-Da--l~~~aFqlFDr~--~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~---~Fg~ 158 (694)
T KOG0751|consen 87 KDGLISFQEFRAFESVLCAP-DA--LFEVAFQLFDRL--GNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKL---HFGD 158 (694)
T ss_pred ccccccHHHHHHHHhhccCc-hH--HHHHHHHHhccc--CCCceehHHHHHHHhccccccCCCccCCcchHHH---Hhhh
Confidence 34467777777665433322 21 123445555554 677777777777766643221 123333 2333
Q ss_pred CCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Q 025241 122 KKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVA 175 (255)
Q Consensus 122 ~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~ 175 (255)
+....++|.+|.+++..+. .|..+++|+..|+.++|.|+.-+|...+..
T Consensus 159 ~~~r~~ny~~f~Q~lh~~~-----~E~~~qafr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 159 IRKRHLNYAEFTQFLHEFQ-----LEHAEQAFREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred HHHHhccHHHHHHHHHHHH-----HHHHHHHHHHhcccCCCeeeeechHhhhhh
Confidence 3444577777777765543 467889999999999999999999887544
No 84
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.62 E-value=0.0016 Score=61.58 Aligned_cols=162 Identities=14% Similarity=0.195 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChH
Q 025241 68 TINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLE 146 (255)
Q Consensus 68 s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~ 146 (255)
..+...-+...|+..|.+ ++|.++..+...+++.++... ...+.++|+..+..+++++.+++|..+...+.. ..
T Consensus 131 ~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~---rp 205 (746)
T KOG0169|consen 131 RSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK---RP 205 (746)
T ss_pred cchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc---Cc
Confidence 334445677889999997 999999999999998877654 457888999998889999999999999887752 22
Q ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChh-hhh
Q 025241 147 DKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPT-LLK 225 (255)
Q Consensus 147 ~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~-~~~ 225 (255)
++...|..+-.+ .+.++.+++..++... .-..+.+...++++++..=..-.....+.++.+.|.++|..... .+.
T Consensus 206 -ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~--q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~~~~fd 281 (746)
T KOG0169|consen 206 -EVYFLFVQYSHG-KEYLSTDDLLRFLEEE--QGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPDCNPFD 281 (746)
T ss_pred -hHHHHHHHHhCC-CCccCHHHHHHHHHHh--cccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCccCCCCC
Confidence 888888888444 8899999999996442 11245667777788864322223345677999999999875332 334
Q ss_pred ccCCCcccccccc
Q 025241 226 NMTLPFLKDMTTV 238 (255)
Q Consensus 226 ~~~~~~~~~~~~~ 238 (255)
.....-.+||..=
T Consensus 282 p~~~~V~qDM~qP 294 (746)
T KOG0169|consen 282 PIHRKVHQDMDQP 294 (746)
T ss_pred cccchhhhcccCc
Confidence 4455555666543
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.47 E-value=0.00044 Score=42.91 Aligned_cols=48 Identities=19% Similarity=0.250 Sum_probs=36.1
Q ss_pred ccHHHHHHHHhccCCCc-hhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 92 IHKEELRLALLKTTSGE-NLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 92 is~~e~~~~l~~~~~~~-~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
++..|++.+|+.++... ..++..+|+.+|.+++|+++.+||..+...+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 67888888888887664 4678889999999889999988888877643
No 86
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.45 E-value=0.001 Score=66.67 Aligned_cols=100 Identities=23% Similarity=0.352 Sum_probs=77.3
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhhCCC------CChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCC
Q 025241 112 LDRVFDLFDEKKNGVIEFEEFVRALSIFHPS------TPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLS 185 (255)
Q Consensus 112 ~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~------~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~ 185 (255)
..-+|..||.+.+|.+++++|..|+..+.-. +.++.+++.+..+.|++.+|+|+..|..++|.+ .+...-.+
T Consensus 2255 Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~--~ETeNI~s 2332 (2399)
T KOG0040|consen 2255 FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS--KETENILS 2332 (2399)
T ss_pred HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh--cccccccc
Confidence 5679999999999999999999999887522 223458999999999999999999999998743 23333344
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 186 DESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 186 ~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
.+ -++.+|+.+|. +..+|+.++....|.
T Consensus 2333 ~~----eIE~AfraL~a-~~~yvtke~~~~~lt 2360 (2399)
T KOG0040|consen 2333 SE----EIEDAFRALDA-GKPYVTKEELYQNLT 2360 (2399)
T ss_pred hH----HHHHHHHHhhc-CCccccHHHHHhcCC
Confidence 44 34667789998 777899888755443
No 87
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.42 E-value=0.00056 Score=61.88 Aligned_cols=74 Identities=26% Similarity=0.327 Sum_probs=63.9
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc----hhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 64 NSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE----NLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 64 ~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~----~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
.+.+|.+|+..+...|.+.| + ++|+++..++..++.+..... ...++.+....+.|.+|+|+|++|+..+..+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~--~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-D--QKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-C--CCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 46678999999999999999 4 899999999999998865433 5679999999999999999999999976555
Q ss_pred C
Q 025241 140 H 140 (255)
Q Consensus 140 ~ 140 (255)
.
T Consensus 87 ~ 87 (627)
T KOG0046|consen 87 K 87 (627)
T ss_pred h
Confidence 3
No 88
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.40 E-value=0.00019 Score=39.98 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 193 IDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 193 ~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
++.+|+.+|.|++|.|+.+||..++.+
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 357789999999999999999999874
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.38 E-value=8.3e-05 Score=54.92 Aligned_cols=62 Identities=18% Similarity=0.388 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHH
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSF 216 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~ 216 (255)
....+...|..+|.|+||.|+..|+..+. ..+ ...+. .++..|+..|.|+||.||..||..+
T Consensus 52 ~~~~~~W~F~~LD~n~d~~L~~~El~~l~----~~l--~~~e~----C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKDGVLDRSELKPLR----RPL--MPPEH----CARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GHHHHHHHHHHH--T-SSEE-TTTTGGGG----STT--STTGG----GHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhHhhhcCCCCCccCHHHHHHHH----HHH--hhhHH----HHHHHHHHcCCCCCCCCCHHHHccC
Confidence 45678899999999999999999999862 211 22222 3455667999999999999999763
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.38 E-value=0.0015 Score=58.35 Aligned_cols=160 Identities=14% Similarity=0.250 Sum_probs=101.1
Q ss_pred CCCCCCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhcc-CCCc------hh---------
Q 025241 47 CPPKLRYTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKT-TSGE------NL--------- 110 (255)
Q Consensus 47 ~~~~~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~-~~~~------~~--------- 110 (255)
+...+.++...+-+++..... -....+.+.+...+.. +.|++...+|+..|..+ +... .+
T Consensus 150 ~d~~g~it~~~Fi~~~~~~~~--l~~t~~~~~v~~l~~~--~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~Y~~t 225 (493)
T KOG2562|consen 150 GDDTGHITRDKFINYWMRGLM--LTHTRLEQFVNLLIQA--GCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQERYAET 225 (493)
T ss_pred cCcCCceeHHHHHHHHHhhhh--HHHHHHHHHHHHHhcc--CccceeccccHHHHHHHHhcCCchhhccChhHHHHHHHH
Confidence 345567777777777755442 1222334445555553 88899988888777663 1111 11
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHH-----HhhCCCCC--------hHHHHHHH---HHHcCCCCCCCcCHHHHHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRAL-----SIFHPSTP--------LEDKIDFA---FRLYDLRETGCIEPEQVRQMVV 174 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~-----~~~~~~~~--------~~~~~~~~---F~~~D~d~dG~I~~~Ef~~~l~ 174 (255)
-++++|-.+++.+.|+|+..+.+... ..+..... ..+....+ |-.+|+|+||.|+.+++...
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry-- 303 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRY-- 303 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHH--
Confidence 26777778899999999998866542 22221110 12333444 67789999999999999886
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHH----HhcCCCCCCcCHHHHHHHHHhCh
Q 025241 175 ATLQESGMHLSDESLKAIIDKTFA----DADADGDGKINREEWKSFALSHP 221 (255)
Q Consensus 175 ~~~~~~g~~~~~~~~~~~~~~~f~----~~D~~~dG~Is~~EF~~~l~~~~ 221 (255)
.. ..++ ..+++.+|. ..-...+|+++|++|+.++....
T Consensus 304 --~d---~tlt----~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e 345 (493)
T KOG2562|consen 304 --GD---HTLT----ERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE 345 (493)
T ss_pred --hc---cchh----hHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc
Confidence 11 1223 246677776 33445789999999999887644
No 91
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.26 E-value=0.0012 Score=47.84 Aligned_cols=64 Identities=31% Similarity=0.371 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.......+|+..|. ++|.|+.++.+.++ ... .+..+.+..|+ ...|.|++|+++++||.-++.-
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f----~~S--~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFF----MKS--GLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHH----HHT--TSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHH----HHc--CCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHH
Confidence 44677888999885 68999999999984 333 45556555555 6899999999999999987754
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.12 E-value=0.0075 Score=57.14 Aligned_cols=138 Identities=24% Similarity=0.330 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCC--CC-
Q 025241 67 FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHP--ST- 143 (255)
Q Consensus 67 ~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~--~~- 143 (255)
.|.++...-...|..+-. +.|+|+-.+-+.++-+.++. .+-+..||...|.|.||+++-.||...+..+.. .+
T Consensus 10 vT~~Er~K~~~qF~~Lkp---~~gfitg~qArnfflqS~LP-~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~lkLqG~ 85 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP---GQGFITGDQARNFFLQSGLP-TPVLAQIWALSDLDKDGRMDIREFSIAMKLIKLKLQGI 85 (1118)
T ss_pred cchHHHHHHHHHHhccCC---CCCccchHhhhhhHHhcCCC-hHHHHHHHHhhhcCccccchHHHHHHHHHHHHHHhcCC
Confidence 456677777788888876 78999999998887654443 345788999999999999999999877633200 00
Q ss_pred --------------------------------------------------------------------------------
Q 025241 144 -------------------------------------------------------------------------------- 143 (255)
Q Consensus 144 -------------------------------------------------------------------------------- 143 (255)
T Consensus 86 ~lP~~LPPsll~~~~~~~p~~~p~fg~Gsls~~qpL~~a~p~~m~~s~v~~~Pv~vatvpS~~~~sl~nGplp~~~~spl 165 (1118)
T KOG1029|consen 86 QLPPVLPPSLLKQPPRNAPSTWPGFGMGSLSYSQPLPPAAPRRMSSSPVVGPPVSVATVPSSRHNSLPNGPLPPTSNSPL 165 (1118)
T ss_pred cCCCCCChHHhccCCcCCCCCCCccCCCCcCcCCCCCcccccccCCCccCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Confidence
Q ss_pred --------------------------ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 025241 144 --------------------------PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTF 197 (255)
Q Consensus 144 --------------------------~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f 197 (255)
...-+.+..|+.+|+...|+++-..-+.+| ... .+....+..|+
T Consensus 166 ~~~ss~se~~~~~~s~~q~~eWAVp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL----~qS--~Lpq~~LA~IW---- 235 (1118)
T KOG1029|consen 166 PHDSSVSEGRPSIESVNQLEEWAVPQHNKLKYRQLFNALDKTRSGYLSGQQARSAL----GQS--GLPQNQLAHIW---- 235 (1118)
T ss_pred CCCcchhhcCccchhhhhhhhccccchhhhHHHHHhhhcccccccccccHHHHHHH----Hhc--CCchhhHhhhe----
Confidence 012345788999999999999999888884 222 34444444444
Q ss_pred HHhcCCCCCCcCHHHHHHHHH
Q 025241 198 ADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 198 ~~~D~~~dG~Is~~EF~~~l~ 218 (255)
..-|.|+||+++-+||+-.+.
T Consensus 236 ~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 236 TLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred eeeccCCCCcccHHHHHHHHH
Confidence 578999999999999997664
No 93
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.97 E-value=0.0034 Score=39.02 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=37.6
Q ss_pred ceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH
Q 025241 126 VIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVA 175 (255)
Q Consensus 126 ~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~ 175 (255)
+++|.|...++..+- -..++.-+..+|+..|++++|.+..+||..+++.
T Consensus 1 kmsf~Evk~lLk~~N-I~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMN-IEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-cCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 468889888887653 4556778899999999999999999999999654
No 94
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.89 E-value=0.0011 Score=48.98 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=20.2
Q ss_pred HHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHH
Q 025241 77 ELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFV 133 (255)
Q Consensus 77 ~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~ 133 (255)
=.|..+|.| +||.|+..|++.+...+ .....=+...++.+|.|+||.|+..|+.
T Consensus 58 W~F~~LD~n--~d~~L~~~El~~l~~~l-~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 58 WKFCQLDRN--KDGVLDRSELKPLRRPL-MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHH--T---SSEE-TTTTGGGGSTT-STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhHhhhcCC--CCCccCHHHHHHHHHHH-hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 334455544 55555555554432211 1111123444455555555555555543
No 95
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.87 E-value=0.0043 Score=55.30 Aligned_cols=64 Identities=23% Similarity=0.380 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCC---CChHHHHHHHHHHcCCCCCCCcCHHHHHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPS---TPLEDKIDFAFRLYDLRETGCIEPEQVRQMVV 174 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~---~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~ 174 (255)
.++.+|+..|.|++|.|+.+||...+..+... ....+.+-..-+..|-|+||.|+.+||..++.
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHh
Confidence 47889999999999999999999998776533 34567788888999999999999999998853
No 96
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.69 E-value=0.0057 Score=55.62 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 147 DKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 147 ~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
..+...|...| |++|+|+..|+..++.. .+... -..+++.++.+....+.|.+|.|+|+||+.++..
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k----~~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~ 85 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKK----AKLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLN 85 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHH----hcccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHh
Confidence 35677899999 99999999999999654 33332 2223344455557999999999999999996543
No 97
>PLN02952 phosphoinositide phospholipase C
Probab=96.68 E-value=0.024 Score=53.36 Aligned_cols=118 Identities=15% Similarity=0.245 Sum_probs=77.9
Q ss_pred CCCceeHHHHHHHHHhhC-CCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHh
Q 025241 123 KNGVIEFEEFVRALSIFH-PSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGM-HLSDESLKAIIDKTFADA 200 (255)
Q Consensus 123 ~~G~I~f~Ef~~~~~~~~-~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~ 200 (255)
+.|.++|++|..+...+. +......++..+|..+-. +.+.++.++|..+|.. +.+. ..+.+.++.++++++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~---~Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVL---HQDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHH---hCCCcCCCHHHHHHHHHHHHhhc
Confidence 468999999988877664 223356899999999954 4468999999999643 3342 356667777776544332
Q ss_pred c---CCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccCCccccc
Q 025241 201 D---ADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVFPSFIFN 245 (255)
Q Consensus 201 D---~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (255)
. ..+.+.+++++|..++... ++.......-++||..-.-.|--+
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s~-~~~~p~~~~v~qdm~~Pls~YfI~ 135 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLYD-DLNGPITPQVHHDMTAPLSHYFIY 135 (599)
T ss_pred cccccccccCcCHHHHHHHHcCc-cccccccccccccCCCchhhheee
Confidence 2 1233469999999999743 343333334567777654454433
No 98
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.49 E-value=0.0051 Score=32.25 Aligned_cols=26 Identities=42% Similarity=0.639 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 194 DKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 194 ~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
+.+|+.+|.+++|.|++.||..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45678999999999999999998864
No 99
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.48 E-value=0.013 Score=40.46 Aligned_cols=69 Identities=28% Similarity=0.479 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhC
Q 025241 148 KIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGM-HLSDESLKAIIDKTFADADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 148 ~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
+++.+|+.+-. +.+.|+.++|..+|. .+-+. ..+..++..++.+.-..-.....+.+++++|.++|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~---~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLR---EEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHH---HTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHH---HHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 46788999955 788999999999963 34454 46788888888642212222356899999999999754
No 100
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.31 E-value=0.0044 Score=32.53 Aligned_cols=25 Identities=32% Similarity=0.593 Sum_probs=16.3
Q ss_pred HHHHHHHcCCCCCCCcCHHHHHHHH
Q 025241 149 IDFAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 149 ~~~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
++.+|+.+|.+++|.|+..||..++
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~ 26 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLL 26 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHH
Confidence 3456666677767777777766653
No 101
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.20 E-value=0.031 Score=39.28 Aligned_cols=79 Identities=19% Similarity=0.357 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH---HhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChh
Q 025241 146 EDKIDFAFRLYDLRETGCIEPEQVRQMVVATL---QESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPT 222 (255)
Q Consensus 146 ~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~---~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~ 222 (255)
.++.+.+|+.+ .|++|.++...|..+++.++ ...|...+-.-++.-++.+|+.. ...-.|+.++|+.|+...|.
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 47899999999 88899999999999887654 22333322222566777777775 24557999999999999886
Q ss_pred hhhcc
Q 025241 223 LLKNM 227 (255)
Q Consensus 223 ~~~~~ 227 (255)
.+-++
T Consensus 79 ~lVWL 83 (90)
T PF09069_consen 79 SLVWL 83 (90)
T ss_dssp TTTHH
T ss_pred eeeHH
Confidence 55443
No 102
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=95.80 E-value=0.006 Score=52.32 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=53.7
Q ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChh
Q 025241 148 KIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPT 222 (255)
Q Consensus 148 ~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~ 222 (255)
.+++-|..+|+|+++.|...|++.+ +.++.. ....+...+.+|+..|.|+|-+||++||+.++...+.
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpF-K~~l~k------~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPF-KRVLLK------KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchH-HHHHHh------hccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 4677899999999999999998775 222222 2345567888889999999999999999999876543
No 103
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.69 E-value=0.049 Score=50.97 Aligned_cols=113 Identities=25% Similarity=0.414 Sum_probs=81.8
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHhhcC-CCC--CCC---------cccHHHHHHHHhccC-C-CchhHHHHHHHHhc
Q 025241 55 FNDLVRLANNSPFTINEVEALYELFKELSS-SLI--DDG---------LIHKEELRLALLKTT-S-GENLFLDRVFDLFD 120 (255)
Q Consensus 55 ~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~-~~d--~~G---------~is~~e~~~~l~~~~-~-~~~~~~~~lf~~~d 120 (255)
...++.+...+.++..++..++.+|+.--. +.- +.. +|+...+..+++.+. . .....+.++|+..|
T Consensus 486 rt~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D 565 (671)
T KOG4347|consen 486 RTILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLD 565 (671)
T ss_pred HHHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhcc
Confidence 345566667788899999999999976321 000 111 233344444444321 1 12356899999999
Q ss_pred CCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHH
Q 025241 121 EKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQV 169 (255)
Q Consensus 121 ~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef 169 (255)
.+.+|.|+|.+++.++..++ .+...+.+..+|+++|.+++ ....+|.
T Consensus 566 ~s~~g~Ltf~~lv~gL~~l~-~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 566 DSMTGLLTFKDLVSGLSILK-AGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred cCCcceeEHHHHHHHHHHHH-hhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999999987 66777899999999999999 8888887
No 104
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=95.66 E-value=0.1 Score=45.28 Aligned_cols=103 Identities=17% Similarity=0.094 Sum_probs=69.7
Q ss_pred CChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhcc----CCCchhHHHHHHHHhcCCCCCcee
Q 025241 53 YTFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKT----TSGENLFLDRVFDLFDEKKNGVIE 128 (255)
Q Consensus 53 l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~----~~~~~~~~~~lf~~~d~~~~G~I~ 128 (255)
-+.++++.+. ..+..|++....- .++......+..+-..+ +......+..+|...|.|.||.++
T Consensus 201 Ct~qeL~~lg-------~RL~dWF~~lhe~-----s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld 268 (434)
T KOG3555|consen 201 CTDQELRRLG-------NRLRDWFKALHED-----SSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLD 268 (434)
T ss_pred CCHHHHHHHH-------HHHHHHHHHHHhh-----hhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccC
Confidence 4455555554 3344444444433 34444444444332222 223456789999999999999999
Q ss_pred HHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHH
Q 025241 129 FEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQM 172 (255)
Q Consensus 129 f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~ 172 (255)
-.|...+.. ...+.-++-.|+..|...||.|+..|.-..
T Consensus 269 ~sEl~~I~l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~C 307 (434)
T KOG3555|consen 269 QSELRAIEL-----DKNEACIKPFFNSCDTYKDGSISTNEWCYC 307 (434)
T ss_pred HHHhhhhhc-----cCchhHHHHHHhhhcccccCccccchhhhh
Confidence 999877653 345678899999999999999999999876
No 105
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.11 Score=37.92 Aligned_cols=65 Identities=23% Similarity=0.364 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccC-----------CCchhH----HHHHHHHhcCCCCCceeHH
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTT-----------SGENLF----LDRVFDLFDEKKNGVIEFE 130 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~-----------~~~~~~----~~~lf~~~d~~~~G~I~f~ 130 (255)
++|+++++ +..|...|-+ ++|+|+--|+..++...- .....+ +..+++.-|.|+||.|+|-
T Consensus 62 ~mtpeqlq--fHYF~MHDld--knn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYg 137 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLD--KNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYG 137 (144)
T ss_pred hCCHHHHh--hhhhhhhccC--cCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHH
Confidence 45566554 3345555553 777888777777765421 111112 3333334455666666666
Q ss_pred HHHH
Q 025241 131 EFVR 134 (255)
Q Consensus 131 Ef~~ 134 (255)
||+.
T Consensus 138 EflK 141 (144)
T KOG4065|consen 138 EFLK 141 (144)
T ss_pred HHHh
Confidence 6654
No 106
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.78 E-value=0.08 Score=45.64 Aligned_cols=97 Identities=12% Similarity=0.111 Sum_probs=73.5
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHhccC--CCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHH
Q 025241 73 EALYELFKELSSSLIDDGLIHKEELRLALLKTT--SGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKID 150 (255)
Q Consensus 73 ~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~--~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~ 150 (255)
..+...|..+|.+ ++|.++..|--..+.-+- ......++-.|..++.+.||.+.-.+|..++.... +-..-++-
T Consensus 259 d~l~~~f~LFde~--~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l--gv~~l~v~ 334 (412)
T KOG4666|consen 259 DKLAPTFMLFDEG--TTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL--GVEVLRVP 334 (412)
T ss_pred hhhhhhhheecCC--CCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhc--Ccceeecc
Confidence 4566777777776 899999888766554332 22235689999999999999999988887776543 22334566
Q ss_pred HHHHHcCCCCCCCcCHHHHHHHH
Q 025241 151 FAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 151 ~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
..|...++..+|.|+.++|+++.
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa 357 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFA 357 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHH
Confidence 78999999999999999999974
No 107
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.53 E-value=0.12 Score=35.64 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=37.2
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhhCCC-CChHHHHHHHHHHcCCC----CCCCcCHHHHHHHH
Q 025241 112 LDRVFDLFDEKKNGVIEFEEFVRALSIFHPS-TPLEDKIDFAFRLYDLR----ETGCIEPEQVRQMV 173 (255)
Q Consensus 112 ~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~-~~~~~~~~~~F~~~D~d----~dG~I~~~Ef~~~l 173 (255)
+..+|..+.. +.+.++.++|..++....+. ....+.+..+++.|.++ ..+.++.++|...|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 4566666644 55667777777776655432 23456666666666443 35777777777774
No 108
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.36 E-value=0.26 Score=48.18 Aligned_cols=104 Identities=17% Similarity=0.112 Sum_probs=82.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCch------hHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 025241 65 SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGEN------LFLDRVFDLFDEKKNGVIEFEEFVRALSI 138 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~------~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~ 138 (255)
...+......+...|..+++. ..|.++.+++..++..++.... .++.++....|.+..|.+++.+|...+..
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~--d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKI--DGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHh--hcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 445667777888888888885 7788999999999988775532 24666777778888899999999999988
Q ss_pred hCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHH
Q 025241 139 FHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQ 171 (255)
Q Consensus 139 ~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~ 171 (255)
-........++-.+|+.+-++.. +|..+|+.+
T Consensus 817 ~~e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 817 EYEDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 76566677788888998877665 788888877
No 109
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.11 E-value=0.16 Score=43.52 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=50.9
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCC-HH-------HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLS-DE-------SLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~-~~-------~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
...|.+.|.|+||.++-.|+.+++..-+...-.+.. +. +.-.+.+.+.+..|.|.|..||.+||++.--+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 456889999999999999999987664443332222 22 22234556667899999999999999987644
No 110
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.48 E-value=0.22 Score=45.34 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 65 SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
.++++++.+++...|+.... |.+|+|+-.--+.++.+..+ ...++..||...|.+.||.++..||...+..+
T Consensus 223 w~IT~EQReYYvnQFrtvQp--Dp~gfisGsaAknFFtKSkl-pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 223 WQITPEQREYYVNQFRTVQP--DPHGFISGSAAKNFFTKSKL-PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred cccCHHHHHHHHhhhhcccC--CcccccccHHHHhhhhhccC-chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 46788999999999999987 48999999888888775332 23568899999999999999999999987554
No 111
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.42 E-value=0.14 Score=44.47 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 146 EDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 146 ~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
...+-++|+.+|.|.||.++..|+..+. + .-.+ ..++..|...|..+||.|+-.||-.+..+
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~------l--dknE----~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIE------L--DKNE----ACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhh------c--cCch----hHHHHHHhhhcccccCccccchhhhhhcc
Confidence 5788999999999999999999999872 1 1222 34555567999999999999999988765
No 112
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.38 E-value=0.24 Score=47.68 Aligned_cols=95 Identities=25% Similarity=0.451 Sum_probs=76.5
Q ss_pred CCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC
Q 025241 124 NGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADAD 203 (255)
Q Consensus 124 ~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~ 203 (255)
+| |+++||. ....+.+.+++..|...|. ++|.++.+|+..++.................+....++++.|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8999998 2255778999999999998 99999999999998876655554455566777888888999999
Q ss_pred CCCCcCHHHHHHHHHhChhhhhc
Q 025241 204 GDGKINREEWKSFALSHPTLLKN 226 (255)
Q Consensus 204 ~dG~Is~~EF~~~l~~~~~~~~~ 226 (255)
..|.+.++++...+...|.....
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~ 96 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFA 96 (646)
T ss_pred ccceeeecchhHHHHhchHHHHH
Confidence 99999999998888877754433
No 113
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=93.36 E-value=1 Score=43.15 Aligned_cols=162 Identities=12% Similarity=0.206 Sum_probs=104.9
Q ss_pred hhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc--------cCC-Cc-----hhHHHHHHHHhc
Q 025241 55 FNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLK--------TTS-GE-----NLFLDRVFDLFD 120 (255)
Q Consensus 55 ~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~--------~~~-~~-----~~~~~~lf~~~d 120 (255)
.-+++.++....+..-.+.-+.++|+..+-+ .++..++..+...+|.. .+. .. .--+.-+++.||
T Consensus 402 AmKlr~LQK~l~ldlv~ltl~l~if~~h~l~-~~~e~m~~~~~i~~L~~~y~~l~e~~g~~v~v~l~vD~~lN~llNvyD 480 (966)
T KOG4286|consen 402 AMKLRRLQKALCLDLLSLSLALDALDQHNLK-QNDQPMDILQIINCLTTIYDRLEQEHGNLVNVPLCVDMCLNWLLNVYD 480 (966)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHhccc-ccCcCCCHHHHHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHhcc
Confidence 3455555555555555666667778777653 24556666666555422 111 11 112567889999
Q ss_pred CCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH---Hh------cC-CCCCHHHHH
Q 025241 121 EKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATL---QE------SG-MHLSDESLK 190 (255)
Q Consensus 121 ~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~---~~------~g-~~~~~~~~~ 190 (255)
..++|.|..-+|...+..++ +...+++++.+|...-.++.-.+ ...|..++..+. +. .| -++.+
T Consensus 481 ~~R~g~irvls~ki~~i~lc-k~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNvep---- 554 (966)
T KOG4286|consen 481 TGRTGRIRVLSFKIGIISLC-KAHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNIEP---- 554 (966)
T ss_pred cCCCcceEEeeehhhHHHHh-cchhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCCCh----
Confidence 99999999999999998888 56778999999999977776554 455554443321 11 22 33333
Q ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhc
Q 025241 191 AIIDKTFADADADGDGKINREEWKSFALSHPTLLKN 226 (255)
Q Consensus 191 ~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~ 226 (255)
-++.+|+ ..++.-.|++..|..|+...|-.+-+
T Consensus 555 -svrsCF~--~v~~~pei~~~~f~dw~~~epqsmVw 587 (966)
T KOG4286|consen 555 -SVRSCFQ--FVNNKPEIEAALFLDWMRLEPQSMVW 587 (966)
T ss_pred -HHHHHHH--hcCCCCcchHHHHHHHhccCcchhhH
Confidence 3666776 33556689999999999988865543
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=93.15 E-value=1.5 Score=34.65 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=73.5
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchh-HHHHHHHHhc---CCCCCceeHHHHHHHHHhhC----------
Q 025241 75 LYELFKELSSSLIDDGLIHKEELRLALLKTTSGENL-FLDRVFDLFD---EKKNGVIEFEEFVRALSIFH---------- 140 (255)
Q Consensus 75 l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~-~~~~lf~~~d---~~~~G~I~f~Ef~~~~~~~~---------- 140 (255)
|.+-..=+|++ +||.|.+-|-...++.++.+.-. .+..++-... ....+.+.---|-..+..+.
T Consensus 9 LQqHvaFFDrd--~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 9 LQQHVAFFDRD--KDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HhhhhceeCCC--CCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 33434446664 99999999999999988876521 1111111110 00111110000100011100
Q ss_pred ---CCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH
Q 025241 141 ---PSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFA 217 (255)
Q Consensus 141 ---~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l 217 (255)
...-..++.+.+|..+++.+.+.++..|+.+++++- +......-.- ...+-..+.-.+-.+.+|.+..+....+.
T Consensus 87 YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n-r~~~D~~GW~-a~~~EW~~~y~L~~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN-RNANDPFGWF-AAFFEWGALYILAKDKDGFLSKEDIRGVY 164 (174)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc-cccCCcchhh-hhhhHHHHHHHHHcCcCCcEeHHHHhhhc
Confidence 011236889999999999999999999999997552 1111111111 00111111123445778999998877654
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.60 E-value=0.43 Score=37.63 Aligned_cols=41 Identities=7% Similarity=0.083 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCC
Q 025241 189 LKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 189 ~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
+.+-++.+|...+..+.+.+|+.|..+++..+-.....+++
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW 134 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGW 134 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchh
Confidence 34456777789998888899999999999988776666553
No 116
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=92.56 E-value=0.81 Score=43.91 Aligned_cols=105 Identities=20% Similarity=0.278 Sum_probs=74.2
Q ss_pred hHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHH------------
Q 025241 110 LFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATL------------ 177 (255)
Q Consensus 110 ~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~------------ 177 (255)
..+..+|...|.+++|.+++.+-+.++..+. .......++..|+..|..++|.+...++..+.....
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n-~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~ 214 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLN-VQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQY 214 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHH-HhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHH
Confidence 3588999999999999999999998887664 344567788889999999999999999988744321
Q ss_pred HhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhCh
Q 025241 178 QESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHP 221 (255)
Q Consensus 178 ~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~ 221 (255)
..-+..++..++.+++.. . .+.+.++.+++..++.+..
T Consensus 215 s~~~~~ls~~~L~~Fl~~----~--q~e~~~~~~~ae~ii~~~e 252 (746)
T KOG0169|consen 215 SHGKEYLSTDDLLRFLEE----E--QGEDGATLDEAEEIIERYE 252 (746)
T ss_pred hCCCCccCHHHHHHHHHH----h--cccccccHHHHHHHHHHhh
Confidence 111344555556555531 1 3445567776666665543
No 117
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=90.80 E-value=3.6 Score=38.65 Aligned_cols=150 Identities=18% Similarity=0.172 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHh-ccCCCch----hHHHHHHHHhcCCC--CCceeHHHHHHHHH
Q 025241 65 SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALL-KTTSGEN----LFLDRVFDLFDEKK--NGVIEFEEFVRALS 137 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~-~~~~~~~----~~~~~lf~~~d~~~--~G~I~f~Ef~~~~~ 137 (255)
..+.+.-++.|..+|...|.+ .||.++-.|+-..=+ .++.... ..++.+.+..-.++ ++.++..-|+-...
T Consensus 187 qelkp~~v~al~RIFki~D~d--~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~ 264 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSD--NDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNT 264 (625)
T ss_pred ccccHHHHHHHHHHHhhhccc--cccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHH
Confidence 345677889999999999996 999999999866422 2333322 23444444444432 34566667777666
Q ss_pred hhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH--HHHhcC--CCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHH
Q 025241 138 IFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVA--TLQESG--MHLSDESLKAIIDKTFADADADGDGKINREEW 213 (255)
Q Consensus 138 ~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~--~~~~~g--~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF 213 (255)
.....+..+ ..--+.+.| |+=+--|+..-+.. +....+ ..+++ ..-+++..+|..+|.|+||.++-+|+
T Consensus 265 lfiergr~E-ttW~iLR~f-----gY~DsleL~~~~l~p~~~~~p~~s~ELs~-~~~~Fl~~~f~~~D~d~Dg~L~p~El 337 (625)
T KOG1707|consen 265 LFIERGRHE-TTWTILRKF-----GYTDSLELTDEYLPPRLKVPPDQSVELSP-KGYRFLVDVFEKFDRDNDGALSPEEL 337 (625)
T ss_pred HHHHhcccc-chhhhhhhc-----CCcchhhhhhhhcCccccCCCCcceeccH-HHHHHHHHHHHhccCCCCCCcCHHHH
Confidence 554333322 222344555 22222233322100 000001 11222 34567889999999999999999999
Q ss_pred HHHHHhChhh
Q 025241 214 KSFALSHPTL 223 (255)
Q Consensus 214 ~~~l~~~~~~ 223 (255)
..+...-|..
T Consensus 338 ~~LF~~~P~~ 347 (625)
T KOG1707|consen 338 KDLFSTAPGS 347 (625)
T ss_pred HHHhhhCCCC
Confidence 8888776643
No 118
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.68 E-value=0.42 Score=47.33 Aligned_cols=140 Identities=22% Similarity=0.355 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhC---C-
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFH---P- 141 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~---~- 141 (255)
.++..+.......|....+ ++|.++....+-++..-.+. ...+.+++...|.+.+|.+++.||...+.... .
T Consensus 122 ~~~~qe~aky~q~f~s~~p---~~g~~sg~~~~pil~~s~Lp-~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~ 197 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSP---SNGLLSGDKAKPILLNSKLP-SDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNG 197 (847)
T ss_pred CCCHHHHHHHHHHHhccCC---CCCccccchhhhhhhcCCCC-hhhhccccccccccccCCCChhhhhhhhhHHHHHhhc
Confidence 3566777778888999987 69999999988877653332 33467899999999999999999998764321 0
Q ss_pred ------------------------------------------------------------------------------CC
Q 025241 142 ------------------------------------------------------------------------------ST 143 (255)
Q Consensus 142 ------------------------------------------------------------------------------~~ 143 (255)
..
T Consensus 198 ~~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~v 277 (847)
T KOG0998|consen 198 NSEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKV 277 (847)
T ss_pred ccCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCccc
Confidence 00
Q ss_pred --ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 144 --PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 144 --~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
........+|...|.+.+|.|+..+....+ ... .+....+. .++...|.++.|.+++++|.-.+..
T Consensus 278 sp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f----~~~--gl~~~~l~----~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDNDGSISSNEARNIF----LPF--GLSKPRLA----HVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred ChHHHHHHHHHHHhccccCCCccccccccccc----ccC--CCChhhhh----hhhhhcchhccCcccccccchhhhh
Confidence 012335567899999999999999999874 223 34444343 4446889999999999988766543
No 119
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.60 E-value=0.5 Score=45.39 Aligned_cols=66 Identities=21% Similarity=0.348 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHh
Q 025241 70 NEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSI 138 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~ 138 (255)
........+|...|+. .+|+++-.+-+.+|...++.. ..+..||..-|.|+||+++-+||+..+..
T Consensus 192 ~~klKY~QlFNa~Dkt--rsG~Lsg~qaR~aL~qS~Lpq-~~LA~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKT--RSGYLSGQQARSALGQSGLPQ-NQLAHIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred hhhhHHHHHhhhcccc--cccccccHHHHHHHHhcCCch-hhHhhheeeeccCCCCcccHHHHHHHHHH
Confidence 4445677889999987 999999999999988755543 35788999999999999999999987744
No 120
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.36 E-value=0.28 Score=42.42 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHH
Q 025241 112 LDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMV 173 (255)
Q Consensus 112 ~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l 173 (255)
+..-|..+|.|.++.|+..|+..+-..+.+......-.+.+|+..|.|+|-.|+++|++..|
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 45578899999999999888777666555444556778889999999999999999999875
No 121
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=89.03 E-value=12 Score=36.97 Aligned_cols=133 Identities=13% Similarity=0.221 Sum_probs=85.0
Q ss_pred HHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcC--CCC-----CceeHHHHHHHHHhhCCCCChHHHH
Q 025241 77 ELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDE--KKN-----GVIEFEEFVRALSIFHPSTPLEDKI 149 (255)
Q Consensus 77 ~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~--~~~-----G~I~f~Ef~~~~~~~~~~~~~~~~~ 149 (255)
+..-....+++..|+|..+.+...+.. ...+..++.....+.. +++ ...+++-|..++..++. ..++
T Consensus 150 K~~tklkmqvn~~grip~knI~k~F~~--~k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp----R~ei 223 (1189)
T KOG1265|consen 150 KAHTKLKMQVNFEGRIPVKNIIKTFSA--DKKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP----RPEI 223 (1189)
T ss_pred HHHHhhhhcccccccccHHHHHHHhhc--CCchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC----chhH
Confidence 333333333346777777776655442 1111223333333322 111 23567888888888873 3689
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHH------HhcCCCCCHHHHHHHHHHHHHHhcCC----CCCCcCHHHHHHHHHh
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATL------QESGMHLSDESLKAIIDKTFADADAD----GDGKINREEWKSFALS 219 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~------~~~g~~~~~~~~~~~~~~~f~~~D~~----~dG~Is~~EF~~~l~~ 219 (255)
..+|..+-.++.-+++.++|..++..-- .-+-+...+..++.+++ .+..| .+|+++-+.|++++..
T Consensus 224 e~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~lie----kyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 224 EEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIE----KYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHH----HcCCchhhhhccccchhhhHHHhhC
Confidence 9999999988889999999999975421 22335567777777775 55555 5689999999999987
No 122
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.70 E-value=2.7 Score=32.73 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=45.9
Q ss_pred HHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc----hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhC
Q 025241 73 EALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE----NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFH 140 (255)
Q Consensus 73 ~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~----~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~ 140 (255)
+.++..|-.+... +...++...|..+++..++-. ...+.-+|..+-..+...|+|++|+.++..+.
T Consensus 2 ~~~F~~f~~fG~~--~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 2 EAVFKAFASFGKK--NGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp HHHHHHHHCSSTS--TSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--ccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 4455666555543 667899999999998755321 34678899998766667899999999887653
No 123
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=88.63 E-value=1.1 Score=42.19 Aligned_cols=78 Identities=18% Similarity=0.211 Sum_probs=53.6
Q ss_pred eeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 025241 127 IEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDG 206 (255)
Q Consensus 127 I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG 206 (255)
|+|..|...+..+..-.....-++++|+.+|.+++|.|++.+|...+..++. .++.+-++-+|+.+|.+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-
Confidence 4555555555544433334456788999999999999999999998655422 1233345677888898888
Q ss_pred CcCHHHH
Q 025241 207 KINREEW 213 (255)
Q Consensus 207 ~Is~~EF 213 (255)
....+|-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 7776665
No 124
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=88.17 E-value=1.3 Score=41.40 Aligned_cols=78 Identities=18% Similarity=0.194 Sum_probs=65.3
Q ss_pred hcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC-chhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCC
Q 025241 63 NNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG-ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHP 141 (255)
Q Consensus 63 ~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~-~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~ 141 (255)
....+++++++.....|..+|.+ +.|+++..+...+++..+.+ ....++++.+..|.+-+|.+...||.+.+..+..
T Consensus 583 ~~i~~~~~~~~~~~~rf~~lD~~--k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~ 660 (680)
T KOG0042|consen 583 IPIKLTPEDFLRRKTRFAFLDAD--KKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKN 660 (680)
T ss_pred cccccCHHHHHHHHHHHHhhcch--HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhc
Confidence 34567889999999999999985 88999999999999887633 3567889999999999999999999999887763
Q ss_pred C
Q 025241 142 S 142 (255)
Q Consensus 142 ~ 142 (255)
.
T Consensus 661 g 661 (680)
T KOG0042|consen 661 G 661 (680)
T ss_pred C
Confidence 3
No 125
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=86.40 E-value=2.4 Score=31.90 Aligned_cols=101 Identities=15% Similarity=0.253 Sum_probs=53.9
Q ss_pred ChhHHHHHHhcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHH--H
Q 025241 54 TFNDLVRLANNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFE--E 131 (255)
Q Consensus 54 ~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~--E 131 (255)
+.-+++.++....+..-++..+...|+...-+...+..++..++..++.. +|........+..+.. .
T Consensus 22 tA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~-----------iy~~l~~~~p~~~~i~~~~ 90 (127)
T PF09068_consen 22 TAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSS-----------IYEFLNKRLPTLHQIPSRP 90 (127)
T ss_dssp HHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHH-----------HHHHHHHHSTTS--HH---
T ss_pred HHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHH-----------HHHHHHHHCCCCCCCCchh
Confidence 34567777777777777888888888888765323667888888876643 3322222122222111 0
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHH
Q 025241 132 FVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVV 174 (255)
Q Consensus 132 f~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~ 174 (255)
.-.+ .+--+.++.+.||.+++|.|+.-.|+.++.
T Consensus 91 v~~a---------~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 91 VDLA---------VDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp --HH---------HHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHH---------HHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 0011 112455677788888888888877777654
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=85.09 E-value=0.2 Score=33.35 Aligned_cols=60 Identities=17% Similarity=0.237 Sum_probs=37.7
Q ss_pred ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCC---CCCCcCHHHHHH
Q 025241 144 PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADAD---GDGKINREEWKS 215 (255)
Q Consensus 144 ~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~---~dG~Is~~EF~~ 215 (255)
.+.+.+..+|+.+ .++.++|+.+||++.+ ++++++-++..+=...+.+ ..|.++|..|++
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l-----------~pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL-----------TPEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS------------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc-----------CcHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3568899999999 7788999999999973 3333344443211122222 225688888764
No 127
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=82.82 E-value=3.8 Score=40.47 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred HHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhCh
Q 025241 146 EDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSD-ESLKAIIDKTFADADADGDGKINREEWKSFALSHP 221 (255)
Q Consensus 146 ~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~-~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~ 221 (255)
..+++..|+-+|+...|.++.+++...+ -..|....+ ++...-+..+....|+++.|++++.+|...+.+..
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~L----mslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCL----MSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHH----HhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhh
Confidence 3678888999999999999999999984 445666654 34444444555677888889999999999887633
No 128
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=82.77 E-value=2.2 Score=32.60 Aligned_cols=36 Identities=17% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCC
Q 025241 124 NGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLR 159 (255)
Q Consensus 124 ~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d 159 (255)
.+.|+|+-|..++........+++-++.+|..|-+.
T Consensus 46 ~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 46 EEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp TTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 347888888888888776666777788888888443
No 129
>PLN02230 phosphoinositide phospholipase C 4
Probab=81.64 E-value=10 Score=36.15 Aligned_cols=96 Identities=15% Similarity=0.246 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHhc---CCCCCCcCHHHHHHHHHh
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGM--HLSDESLKAIIDKTFADAD---ADGDGKINREEWKSFALS 219 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~--~~~~~~~~~~~~~~f~~~D---~~~dG~Is~~EF~~~l~~ 219 (255)
...++..+|..|-.++ +.++.++|..+|.. +.+. ..+.+.++.+++.+..... .-+.+.++.+.|..++..
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~---~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAE---EGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHH---hCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 4578999999995444 79999999999633 2322 3456666777765443322 223457999999999976
Q ss_pred ChhhhhccCCCccccccccCCccccc
Q 025241 220 HPTLLKNMTLPFLKDMTTVFPSFIFN 245 (255)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (255)
. ++.....-..++||+.=.-.|--|
T Consensus 103 ~-~~~~~~~~~v~qDM~~PLshYfI~ 127 (598)
T PLN02230 103 T-DLNPPIADQVHQNMDAPLSHYFIF 127 (598)
T ss_pred c-ccCCcccccccccCCCchhhheee
Confidence 3 222222223467787654444433
No 130
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=79.78 E-value=12 Score=32.44 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=10.3
Q ss_pred HHHHhcCCCCCceeHHHHHHHH
Q 025241 115 VFDLFDEKKNGVIEFEEFVRAL 136 (255)
Q Consensus 115 lf~~~d~~~~G~I~f~Ef~~~~ 136 (255)
++..+|.|++..|+.+||+...
T Consensus 301 VMk~vDtNqDRlvtleEFL~~t 322 (442)
T KOG3866|consen 301 VMKQVDTNQDRLVTLEEFLNDT 322 (442)
T ss_pred HHHhcccchhhhhhHHHHHhhh
Confidence 3444455554445555554443
No 131
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=79.56 E-value=3.4 Score=38.71 Aligned_cols=63 Identities=13% Similarity=0.232 Sum_probs=51.3
Q ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHh
Q 025241 149 IDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALS 219 (255)
Q Consensus 149 ~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~ 219 (255)
.+.-|..+|.|+.|+++..+..++| ...+...++..+++++ ++.|.+.+|.+...||.+++..
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vl----k~~~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVL----KSENVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHH----HHhcCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 3456899999999999999999995 4445677877777777 4788888999999999887753
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=79.53 E-value=18 Score=34.49 Aligned_cols=85 Identities=12% Similarity=0.027 Sum_probs=58.8
Q ss_pred CCCcccHHHHHHHHhccCC---CchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCC-ChHHHHHHHHHHc-------
Q 025241 88 DDGLIHKEELRLALLKTTS---GENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPST-PLEDKIDFAFRLY------- 156 (255)
Q Consensus 88 ~~G~is~~e~~~~l~~~~~---~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~-~~~~~~~~~F~~~------- 156 (255)
+.|.++.++|....+.+.. ...+++..+|..+..++ +.++.++|..++....+.. ...+.++.+++.+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 5689999999877665532 24578999999996644 6799999999998775432 3345555555433
Q ss_pred CCCCCCCcCHHHHHHHH
Q 025241 157 DLRETGCIEPEQVRQMV 173 (255)
Q Consensus 157 D~d~dG~I~~~Ef~~~l 173 (255)
...+.+.++.+.|...|
T Consensus 92 ~~~~~~~l~~~~F~~~l 108 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFL 108 (599)
T ss_pred ccccccCcCHHHHHHHH
Confidence 11233568999999886
No 133
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=77.95 E-value=4.4 Score=41.92 Aligned_cols=59 Identities=17% Similarity=0.283 Sum_probs=43.0
Q ss_pred HHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 151 FAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 151 ~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
..|+.||+||.|.|+..+|..+|. ...+.+..+++-++. -...|.+...+|++|+.-..
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame-----~~k~ytqse~dflls----cae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAME-----GHKHYTQSEIDFLLS----CAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHh-----ccccchhHHHHHHHH----hhccCccccccHHHHHHHhc
Confidence 348889999999999999999863 234556666655553 34555667899999987653
No 134
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=77.84 E-value=4.2 Score=31.04 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=45.8
Q ss_pred CCCChhHHHHHHhcCCCCHHHHHHHHHHHHhhcC--CCCCCCcccHHHHHHHHhc-cCCC-chhHHHHHHHHhcCCC
Q 025241 51 LRYTFNDLVRLANNSPFTINEVEALYELFKELSS--SLIDDGLIHKEELRLALLK-TTSG-ENLFLDRVFDLFDEKK 123 (255)
Q Consensus 51 ~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~~d~--~~d~~G~is~~e~~~~l~~-~~~~-~~~~~~~lf~~~d~~~ 123 (255)
..+++.++.++++....+...++.+.+.|+.-.. .++..+.|+.+.|+..|+. +... +.+.++++|..|-...
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~~ 82 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKKP 82 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS----
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence 5789999999998888888899999999964221 1125679999999999887 3332 4567999999986543
No 135
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=77.34 E-value=12 Score=26.44 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=25.3
Q ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHH
Q 025241 147 DKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREE 212 (255)
Q Consensus 147 ~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~E 212 (255)
++...++..+........+..++...+.. ..+++....+++.+++.... ||.++..|
T Consensus 37 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~~~l~~L~~vA~A--DG~~~~~E 93 (104)
T cd07313 37 EEAAELLAEAEALEEEAPDLYEFTSLIKE-------HFDYEERLELVEALWEVAYA--DGELDEYE 93 (104)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHh--cCCCCHHH
Confidence 33344444443333334455555554321 12344444555555555554 34455443
No 136
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=75.16 E-value=6.5 Score=28.04 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCC---CCCceeHHHHHHHHHhhC
Q 025241 71 EVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEK---KNGVIEFEEFVRALSIFH 140 (255)
Q Consensus 71 ~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~---~~G~I~f~Ef~~~~~~~~ 140 (255)
.-..+...|+++. .||+|....|..++..- ....++.++|..+-.. ....|+.+|+..+|..+.
T Consensus 28 ~W~~VE~RFd~La----~dG~L~rs~Fg~CIGM~--dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 28 GWKEVEKRFDKLA----KDGLLPRSDFGECIGMK--DSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -HHHHHHHHHHH-----BTTBEEGGGHHHHHT----S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhC----cCCcccHHHHHHhcCCc--ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 3456777888886 48999999998888632 3456677777765322 235688888888887653
No 137
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.71 E-value=8.8 Score=35.40 Aligned_cols=60 Identities=23% Similarity=0.238 Sum_probs=45.3
Q ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 149 IDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 149 ~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
...-|+.+-.|-+|.|+-.--+.++.+ . ++.-.++.-|+ +..|.+.||.++..||..++.
T Consensus 233 YvnQFrtvQpDp~gfisGsaAknFFtK----S--klpi~ELshIW----eLsD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 233 YVNQFRTVQPDPHGFISGSAAKNFFTK----S--KLPIEELSHIW----ELSDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHhhhhcccCCcccccccHHHHhhhhh----c--cCchHHHHHHH----hhcccCccccccHHHHHhhHh
Confidence 455688888999999998888887432 2 34444554454 689999999999999998764
No 138
>PLN02228 Phosphoinositide phospholipase C
Probab=74.16 E-value=18 Score=34.25 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhcCC----CCCCcCHHHHHHHHH
Q 025241 144 PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMH-LSDESLKAIIDKTFADADAD----GDGKINREEWKSFAL 218 (255)
Q Consensus 144 ~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~-~~~~~~~~~~~~~f~~~D~~----~dG~Is~~EF~~~l~ 218 (255)
...+++..+|..+-.+ +.++.++|..+|.. ..+.. .+.+.+.++++ .+... ..|.++.+.|..++.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~---~Q~~~~~~~~~~~~i~~----~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSE---VQGERHAGLDYVQDIFH----SVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHH---hcCCccCCHHHHHHHHH----HhccchhhcccCccCHHHHHHHhc
Confidence 3568888999888543 57999999998643 23322 33444555553 44322 346799999999997
Q ss_pred hChhhhhccCCCccccccccCCccccc
Q 025241 219 SHPTLLKNMTLPFLKDMTTVFPSFIFN 245 (255)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (255)
......-...-.-++||..-.-.|--|
T Consensus 92 s~~n~~~~~~~~v~qdm~~PLs~YfI~ 118 (567)
T PLN02228 92 SDTNSPLPMSGQVHHDMKAPLSHYFVY 118 (567)
T ss_pred CcccCCCCccccccccCCCchhhheee
Confidence 632111111112357777654444433
No 139
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=71.91 E-value=11 Score=35.47 Aligned_cols=90 Identities=14% Similarity=0.257 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCc---hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCC
Q 025241 65 SPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGE---NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHP 141 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~---~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~ 141 (255)
+.++..-++.+...|..+|.+ +||.++..|+..+....+... .++.... -.+..|.+++.-|+..|.....
T Consensus 307 ~ELs~~~~~Fl~~~f~~~D~d--~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~WsL~Tl 380 (625)
T KOG1707|consen 307 VELSPKGYRFLVDVFEKFDRD--NDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWSLMTL 380 (625)
T ss_pred eeccHHHHHHHHHHHHhccCC--CCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHHHHhh
Confidence 456788899999999999995 999999999999988765332 1111111 1226799999999999976542
Q ss_pred CCChHHHHHHHHHHcCCCC
Q 025241 142 STPLEDKIDFAFRLYDLRE 160 (255)
Q Consensus 142 ~~~~~~~~~~~F~~~D~d~ 160 (255)
.....---..+|.-|..++
T Consensus 381 ld~~~t~~~L~Ylgf~~~~ 399 (625)
T KOG1707|consen 381 LDPRRTLEYLAYLGFPTDA 399 (625)
T ss_pred ccHHHHHHHHHhcCCcccc
Confidence 2222223334455565554
No 140
>PLN02223 phosphoinositide phospholipase C
Probab=71.32 E-value=35 Score=32.15 Aligned_cols=100 Identities=13% Similarity=0.022 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhc----CCCCCCcCHHHHHHHHHh
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESG-MHLSDESLKAIIDKTFADAD----ADGDGKINREEWKSFALS 219 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g-~~~~~~~~~~~~~~~f~~~D----~~~dG~Is~~EF~~~l~~ 219 (255)
..++++.+|..+ .+++|.++.+.+.+++.-+....| ...+.++.+.+++.++.... ..+.+.++.+.|.+++..
T Consensus 14 ~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 568899999999 477789999999998644333444 35667788888887665432 122367999999999976
Q ss_pred ChhhhhccCCCc-cccccccCCcccccc
Q 025241 220 HPTLLKNMTLPF-LKDMTTVFPSFIFNT 246 (255)
Q Consensus 220 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 246 (255)
.. +........ .+||+.=...|--|.
T Consensus 93 ~~-~n~~~~~~v~~~DM~~PLshYfI~S 119 (537)
T PLN02223 93 TE-LNPPIGDQVRHHDMHAPLSHYFIHT 119 (537)
T ss_pred cc-cCCccccccCcccCCCchhhheeec
Confidence 32 111111122 567766545554443
No 141
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=70.96 E-value=16 Score=32.16 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHhhcCC-CCCCCcccHHHHHHHHhc----cCCC----c--------hhHHHHHHHHhcCCCCCce
Q 025241 65 SPFTINEVEALYELFKELSSS-LIDDGLIHKEELRLALLK----TTSG----E--------NLFLDRVFDLFDEKKNGVI 127 (255)
Q Consensus 65 ~~~s~~~i~~l~~~F~~~d~~-~d~~G~is~~e~~~~l~~----~~~~----~--------~~~~~~lf~~~d~~~~G~I 127 (255)
.++-.-+|..+.++|+...-| .+.+-.|...-+...+.. ++.. . ...+.-++..+|..+.|++
T Consensus 48 ~~~hlvdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~~g~~ 127 (434)
T KOG4301|consen 48 CNLHLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQ 127 (434)
T ss_pred CCchhHHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccCCCCc
Confidence 333344666666777766543 245555665555544322 1111 0 0124456778899999998
Q ss_pred eHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHhcCCC
Q 025241 128 EFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESG---MHLSDESLKAIIDKTFADADADG 204 (255)
Q Consensus 128 ~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g---~~~~~~~~~~~~~~~f~~~D~~~ 204 (255)
+---....+..++ ++...++++.+|.+. .|.+|.+..-.+.++++..+.... ...+..-.+..++..|-.
T Consensus 128 ~vfavkialatlc-~gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf~q----- 200 (434)
T KOG4301|consen 128 QVFAVKIALATLC-GGKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCFLQ----- 200 (434)
T ss_pred eeecchhhhhhhc-cchHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHHHH-----
Confidence 8777777777777 566789999999998 566788777777777655442211 111110112233333322
Q ss_pred CCCcCHHHHHHHHHhChhh
Q 025241 205 DGKINREEWKSFALSHPTL 223 (255)
Q Consensus 205 dG~Is~~EF~~~l~~~~~~ 223 (255)
+.+++.+.|+..+...|.-
T Consensus 201 qrKv~Ln~fldtl~sdp~p 219 (434)
T KOG4301|consen 201 QRKVELNQFLDTLMSDPPP 219 (434)
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 3467888888877776653
No 142
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=67.09 E-value=51 Score=24.68 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=43.7
Q ss_pred HHHHHHHHcCCC--CCCCcCHHHHHHHHHHHHHhc----CCCCC------HHHHHHHHHHHHHHhcCCCCCCcCHHHHHH
Q 025241 148 KIDFAFRLYDLR--ETGCIEPEQVRQMVVATLQES----GMHLS------DESLKAIIDKTFADADADGDGKINREEWKS 215 (255)
Q Consensus 148 ~~~~~F~~~D~d--~dG~I~~~Ef~~~l~~~~~~~----g~~~~------~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~ 215 (255)
.+..+|+...-+ .+..++..|+..++..++... +.-.. +..++-.++.++..+|.++.|.|+.-.|..
T Consensus 42 ~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 42 NVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHHH
Confidence 344455554432 245699999999888877322 21111 245667888999999999999999998877
Q ss_pred HHH
Q 025241 216 FAL 218 (255)
Q Consensus 216 ~l~ 218 (255)
.+.
T Consensus 122 aL~ 124 (127)
T PF09068_consen 122 ALI 124 (127)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 143
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=66.80 E-value=58 Score=25.21 Aligned_cols=70 Identities=16% Similarity=0.222 Sum_probs=46.2
Q ss_pred HHHHHHh---cCCCCCceeHHHHHHHHHhhC--CCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC
Q 025241 113 DRVFDLF---DEKKNGVIEFEEFVRALSIFH--PSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGM 182 (255)
Q Consensus 113 ~~lf~~~---d~~~~G~I~f~Ef~~~~~~~~--~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~ 182 (255)
+.+|..| .......++=..|..++.... ........+..+|..+-..+...|++++|..+|..+....+.
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 3444444 333445688888888886632 233567889999999866666779999999998766555444
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=64.59 E-value=23 Score=26.70 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=40.4
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccC
Q 025241 162 GCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVF 239 (255)
Q Consensus 162 G~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~ 239 (255)
..++.+|+..++.. .|.. .+.+-.--...|+..+.+. ..++-+|.+.++..+|.+++...+-.-....-+|
T Consensus 35 ~~~s~~eL~~~l~~----~~~~--~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~LikRPIv~~~~~~~iG~ 105 (132)
T PRK13344 35 EPLTKEEILAILTK----TENG--IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILKSPILIDDKRLQVGY 105 (132)
T ss_pred CCCCHHHHHHHHHH----hCCC--HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCccceeCcEEEeCCEEEeCC
Confidence 35778888887433 2221 1111111223344555333 4689999999999999998776554333333333
No 145
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=63.15 E-value=22 Score=21.28 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc
Q 025241 70 NEVEALYELFKELSSSLIDDGLIHKEELRLALLK 103 (255)
Q Consensus 70 ~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~ 103 (255)
..+..+...|+++...-....+++..||+.++..
T Consensus 3 ~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 3 KAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3466677888888753124568999999998864
No 146
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=63.05 E-value=13 Score=38.84 Aligned_cols=83 Identities=17% Similarity=0.293 Sum_probs=58.0
Q ss_pred CCCChhHHHHHHhcCCCCHHHHHHHHHHH------------HhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHH
Q 025241 51 LRYTFNDLVRLANNSPFTINEVEALYELF------------KELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDL 118 (255)
Q Consensus 51 ~~l~~~~~~~l~~~~~~s~~~i~~l~~~F------------~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~ 118 (255)
+.+..+-...+.+.+. ..+.|-.+++.| +.+|+ ||.|.|+..+|..++..-..-...++.-++..
T Consensus 4024 gtigkqmvd~lvess~-nvemilkffdmflklkdltssdtfkeydp--dgkgiiskkdf~kame~~k~ytqse~dfllsc 4100 (5019)
T KOG2243|consen 4024 GTIGKQMVDMLVESSN-NVEMILKFFDMFLKLKDLTSSDTFKEYDP--DGKGIISKKDFHKAMEGHKHYTQSEIDFLLSC 4100 (5019)
T ss_pred chhHHHHHHHHHHcCc-cHHHHHHHHHHHHHHhhccccccchhcCC--CCCccccHHHHHHHHhccccchhHHHHHHHHh
Confidence 3666666666665443 445565655554 45565 59999999999999985433234556777788
Q ss_pred hcCCCCCceeHHHHHHHH
Q 025241 119 FDEKKNGVIEFEEFVRAL 136 (255)
Q Consensus 119 ~d~~~~G~I~f~Ef~~~~ 136 (255)
...|.+...+|++|+..+
T Consensus 4101 ae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4101 AEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred hccCccccccHHHHHHHh
Confidence 888888899999998765
No 147
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=61.63 E-value=3.6 Score=33.22 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=40.2
Q ss_pred HHHHHcCC-CCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 151 FAFRLYDL-RETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 151 ~~F~~~D~-d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
+-|-.+|+ -.||+++-.|+.-+ ...-.+ ++-.+...|...|.|+||+|+.+||..++-
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl-----~ap~ip-----me~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPL-----RAPLIP-----MEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeeccccCCCccccccccccccc-----cCCccc-----HHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 34666775 47999999998764 111111 122455666799999999999999988763
No 148
>PLN02222 phosphoinositide phospholipase C 2
Probab=57.90 E-value=51 Score=31.48 Aligned_cols=91 Identities=11% Similarity=0.218 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhCh-h
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGM-HLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHP-T 222 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~-~ 222 (255)
...++..+|..+-. ++.++.++|..+|.. +.+. ..+.+.+++++++. ... ...+.++++.|..++.... .
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~---~Q~~~~~~~~~~~~ii~~~-~~~--~~~~~~~~~gF~~yL~s~~n~ 94 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLID---VQKQDKATREDAQSIINSA-SSL--LHRNGLHLDAFFKYLFGDNNP 94 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHH---hcCCccCCHHHHHHHHHhh-hhh--hhccCcCHHHHHHHhcCCCCC
Confidence 34689999999854 479999999999643 3343 34666777777642 111 2356799999999997631 1
Q ss_pred hhhccCCCccccccccCCccccc
Q 025241 223 LLKNMTLPFLKDMTTVFPSFIFN 245 (255)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~ 245 (255)
.+.. ..-++||..=.-.|--|
T Consensus 95 ~~~~--~~v~qDm~~Pls~YfI~ 115 (581)
T PLN02222 95 PLAL--HEVHHDMDAPISHYFIF 115 (581)
T ss_pred CCcc--ccccccCCCchhhheee
Confidence 1211 23467777654444433
No 149
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=57.78 E-value=5.4 Score=32.25 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=24.8
Q ss_pred CCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHH
Q 025241 124 NGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQ 171 (255)
Q Consensus 124 ~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~ 171 (255)
||+++-.|+..+...+. +.+.-....|...|.|+||+|+.+|...
T Consensus 202 d~~~sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~ 246 (259)
T KOG4004|consen 202 DGYLSHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAG 246 (259)
T ss_pred cccccccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhc
Confidence 55666666555444333 3444455556666666666666666544
No 150
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=57.39 E-value=13 Score=18.48 Aligned_cols=16 Identities=13% Similarity=0.308 Sum_probs=10.8
Q ss_pred CCCCCCCcCHHHHHHH
Q 025241 157 DLRETGCIEPEQVRQM 172 (255)
Q Consensus 157 D~d~dG~I~~~Ef~~~ 172 (255)
|.|+||.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 5678888887776553
No 151
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=54.91 E-value=25 Score=25.03 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccC
Q 025241 195 KTFADADADGDGKINREEWKSFALSHPTLLKNMT 228 (255)
Q Consensus 195 ~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~ 228 (255)
..|+..+.+....++-+|+++++.++|.+++...
T Consensus 61 ~~~~~l~~~~~~~ls~~e~~~~l~~~p~LikRPi 94 (105)
T cd02977 61 TPYRKLGLADKDELSDEEALELMAEHPKLIKRPI 94 (105)
T ss_pred chHHHcCCccccCCCHHHHHHHHHhCcCeeeCCE
Confidence 3445555543457899999999999999886554
No 152
>PRK12559 transcriptional regulator Spx; Provisional
Probab=54.88 E-value=46 Score=25.01 Aligned_cols=72 Identities=14% Similarity=0.250 Sum_probs=42.5
Q ss_pred CCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccCC
Q 025241 162 GCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVFP 240 (255)
Q Consensus 162 G~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
..++.+|+..++. ..+.. ...+-.--...|+..+.+. -.++-+|.+.++..+|.+++...+-.-....-+||
T Consensus 35 ~~~s~~el~~~l~----~~~~g--~~~lin~~~~~~k~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~iGf~ 106 (131)
T PRK12559 35 NSMTVDELKSILR----LTEEG--ATEIISTRSKTFQDLNINI-EELSLNEFYKLIIEHPLMLRRPIMLDEKRLQIGFN 106 (131)
T ss_pred CcCCHHHHHHHHH----HcCCC--HHHHHhcCcHHHHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEeCCEEEEcCC
Confidence 3567777777743 22222 1122122234455665544 35789999999999999998776544444444444
No 153
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=53.47 E-value=54 Score=25.27 Aligned_cols=45 Identities=18% Similarity=0.415 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCc
Q 025241 184 LSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTLPF 231 (255)
Q Consensus 184 ~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~ 231 (255)
|+.++++.+++.+.+.+-.++ ++=+++....++-|.+...+..++
T Consensus 128 MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~nil~~~ 172 (175)
T PF04876_consen 128 MSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSNILQPY 172 (175)
T ss_pred hhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHHHHHHH
Confidence 444444444554444554432 456777777777777766654433
No 154
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.46 E-value=80 Score=22.59 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcC---CCCCCCcCHHHHHHHH
Q 025241 111 FLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYD---LRETGCIEPEQVRQMV 173 (255)
Q Consensus 111 ~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D---~d~dG~I~~~Ef~~~l 173 (255)
.+++-|..+-. +|.+....|-.|+... .+.+-...+|..+- .-....|+.+|++.++
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CIGM~----dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW 90 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECIGMK----DSKEFAGELFDALARRRGIKGDSITKDELKEFW 90 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHHT------S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhcCCc----ccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHH
Confidence 35555555555 6788888888887643 23455555565542 1123567777777764
No 155
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.93 E-value=8.7 Score=34.09 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHH
Q 025241 145 LEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWK 214 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~ 214 (255)
..+.++++|+.+|+.++|+|+-.-+..+++. .....++...-.+.+ +..|+.+-|.|-.++|.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~----~N~~vse~a~v~l~~---~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTA----LNRLVSEPAYVMLMR---QPLDPESLGIILLEDFL 369 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHH----hcccccCHHHHHHhc---CccChhhcceEEecccc
Confidence 4688999999999999999999999998654 333444443322222 34555555555544443
No 156
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=51.24 E-value=83 Score=22.03 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHhcCCCCCCcCHHH
Q 025241 185 SDESLKAIIDKTFADADADGDGKINREE 212 (255)
Q Consensus 185 ~~~~~~~~~~~~f~~~D~~~dG~Is~~E 212 (255)
+++....++..++..... ||.++..|
T Consensus 69 ~~~~r~~~l~~l~~vA~A--DG~~~~~E 94 (106)
T cd07316 69 RPELLLQLLEFLFQIAYA--DGELSEAE 94 (106)
T ss_pred CHHHHHHHHHHHHHHHHH--cCCCCHHH
Confidence 334444444444444444 34555544
No 157
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=51.00 E-value=38 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.312 Sum_probs=23.8
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhChhhhhccCC
Q 025241 197 FADADADGDGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 197 f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
|+....+. ..++-+|++.++..+|.+++...+
T Consensus 63 y~~l~~~~-~~ls~~e~i~ll~~~P~LikRPIi 94 (112)
T cd03034 63 YKELGLAD-PELSDEELIDAMAAHPILIERPIV 94 (112)
T ss_pred HHHcCCCc-cCCCHHHHHHHHHhCcCcccCCEE
Confidence 34444433 468999999999999999977654
No 158
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.97 E-value=1.1e+02 Score=30.59 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=78.5
Q ss_pred CCHHHHHH-HHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCch--hHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCC
Q 025241 67 FTINEVEA-LYELFKELSSSLIDDGLIHKEELRLALLKTTSGEN--LFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPST 143 (255)
Q Consensus 67 ~s~~~i~~-l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~--~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~ 143 (255)
.++.+|.. +++.+...|++ ....|+..+++..+.+....-. ....+-|.. |..+.+.++|++|..+...++-..
T Consensus 137 ~~p~qI~~wlrk~~ysvd~~--~~~~isard~k~~l~qvn~k~~~~kfl~e~~te-d~~~k~dlsf~~f~~ly~~lmfs~ 213 (1267)
T KOG1264|consen 137 PTPLQIERWLRKQIYSVDQT--RENSISARDLKTILPQVNFKVSSAKFLKEKFTE-DGARKDDLSFEQFHLLYKKLMFSQ 213 (1267)
T ss_pred CChHHHHHHHHhhheeccch--hhhheeHHhhhcccccceEEechHHHHHHHHhH-hhhccccccHHHHHHHHHHHhhcc
Confidence 35556665 45567777764 5667999999988876654422 222223332 233567899999999987765211
Q ss_pred ChHHHH--HHHH--HHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHh-cCCCCCCcCHHHHHHH
Q 025241 144 PLEDKI--DFAF--RLYDLRETGCIEPEQVRQMVVATLQESGMHLSD--ESLKAIIDKTFADA-DADGDGKINREEWKSF 216 (255)
Q Consensus 144 ~~~~~~--~~~F--~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~--~~~~~~~~~~f~~~-D~~~dG~Is~~EF~~~ 216 (255)
.....+ ...| ..=+...--.+...||.++|.. +.+....- -.+++++....+.. -....-.+++.||+.+
T Consensus 214 ~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~---~Q~e~~Asdr~av~~~~r~F~~D~~re~~EPyl~v~EFv~f 290 (1267)
T KOG1264|consen 214 QKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIH---EQQEHWASDRNAVREFMRKFIDDTMRETAEPYLFVDEFVTF 290 (1267)
T ss_pred chhhhhcccchhhhcCCCCccceEeeHHHHHHHHHh---hhHHHhhhHHHHHHHHHHHHHhhhhhhccCcceeHHHHHHH
Confidence 111111 1111 1112222257999999998632 22222111 13344443221111 1123457999999998
Q ss_pred HHh
Q 025241 217 ALS 219 (255)
Q Consensus 217 l~~ 219 (255)
+-.
T Consensus 291 LFS 293 (1267)
T KOG1264|consen 291 LFS 293 (1267)
T ss_pred Hhh
Confidence 743
No 159
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.87 E-value=11 Score=37.75 Aligned_cols=72 Identities=21% Similarity=0.347 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhC
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFH 140 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~ 140 (255)
..+..+...+.++|...|++ .+|.|+..+.+..+...++. ...+..+|...|....|.+++.+|...+..+.
T Consensus 276 ~vsp~d~~~~~~if~q~d~~--~dG~I~s~~~~~~f~~~gl~-~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKD--NDGSISSNEARNIFLPFGLS-KPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred ccChHHHHHHHHHHHhcccc--CCCcccccccccccccCCCC-hhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 56788888899999999996 99999999998877653332 35588999999999999999999988776543
No 160
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=50.75 E-value=67 Score=23.20 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=39.9
Q ss_pred HHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Q 025241 153 FRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADA 202 (255)
Q Consensus 153 F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~ 202 (255)
-+.....++|.--+.+-...+...+...|.++++++++..++++...+..
T Consensus 57 eq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m~~ 106 (108)
T PF09682_consen 57 EQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEMND 106 (108)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhh
Confidence 34444445888888888888888889999999999999999988877653
No 161
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=50.40 E-value=24 Score=25.33 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=24.1
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCC
Q 025241 196 TFADADADGDGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 196 ~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
.|+..+.+....++-+|++.+|..+|.+++...+
T Consensus 60 ~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi 93 (105)
T cd03035 60 TWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVL 93 (105)
T ss_pred HHHhCChhhhccCCHHHHHHHHHhCcCeeecceE
Confidence 3444444322358899999999999999877644
No 162
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=49.42 E-value=56 Score=23.69 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=24.0
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCC
Q 025241 197 FADADADGDGKINREEWKSFALSHPTLLKNMTLP 230 (255)
Q Consensus 197 f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~ 230 (255)
|+....+. ..++-+|++.++..+|.+++...+.
T Consensus 64 ~k~l~~~~-~~ls~~e~i~~l~~~p~LikRPii~ 96 (115)
T cd03032 64 FKNLNIDI-DELSLSELIRLISEHPSLLRRPIII 96 (115)
T ss_pred HHHcCCCc-ccCCHHHHHHHHHhChhheeCCEEE
Confidence 34544333 4589999999999999998766543
No 163
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=49.07 E-value=14 Score=27.21 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH
Q 025241 184 LSDESLKAIIDKTFADADADGDGKINREEWKSFAL 218 (255)
Q Consensus 184 ~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~ 218 (255)
+++++++.+++ ++-.|..|.+.|.||+.-+.
T Consensus 4 LtDeQFdrLW~----e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWN----EMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHT----TS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhh----hCcCCccCCEeHHHHHHHcc
Confidence 67777777774 89999999999999987664
No 164
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=47.41 E-value=55 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.1
Q ss_pred CCCcCHHHHHHHHHhChhhhhcc
Q 025241 205 DGKINREEWKSFALSHPTLLKNM 227 (255)
Q Consensus 205 dG~Is~~EF~~~l~~~~~~~~~~ 227 (255)
+|.|+..||++.+.+++-+.+.+
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f 64 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRF 64 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHH
T ss_pred cCCCcHHHHHHHHHcCHHHHHHH
Confidence 68899999999999988877665
No 165
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=45.31 E-value=53 Score=23.86 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=23.4
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhChhhhhccCC
Q 025241 197 FADADADGDGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 197 f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
|+..+.+. ..++-+|++.++..+|.+++...+
T Consensus 64 ~~~l~~~~-~~ls~~e~i~~l~~~P~LikRPIi 95 (114)
T TIGR00014 64 YKELGLSD-PNLSDQELLDAMVAHPILLERPIV 95 (114)
T ss_pred HHHcCCCc-cCCCHHHHHHHHHHCcCcccCCeE
Confidence 34444332 358899999999999999977644
No 166
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=44.74 E-value=83 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhc
Q 025241 66 PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLK 103 (255)
Q Consensus 66 ~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~ 103 (255)
.+++.....+...|+.+ +.+.|+.+||...++.
T Consensus 21 ~l~~~~~~~l~~~Y~~~-----k~~kIsR~~fvr~lR~ 53 (70)
T PF12174_consen 21 HLPPSKMDLLQKHYEEF-----KKKKISREEFVRKLRQ 53 (70)
T ss_pred HCCHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHH
Confidence 34666777777778777 6788888888777765
No 167
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=44.51 E-value=27 Score=19.37 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=17.1
Q ss_pred CCCcCHHHHHHHHHhChhhhhcc
Q 025241 205 DGKINREEWKSFALSHPTLLKNM 227 (255)
Q Consensus 205 dG~Is~~EF~~~l~~~~~~~~~~ 227 (255)
.|.|+++|++.+..+--.+.+.-
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~n 24 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESN 24 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHc
Confidence 57899999998887765555544
No 168
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=43.42 E-value=1.1e+02 Score=21.39 Aligned_cols=59 Identities=20% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCCCCCcccHHHHHHHHhcc-------CCC-----chhHHHHHHHHhcCCCCCceeHHHHHHHHH
Q 025241 74 ALYELFKELSSSLIDDGLIHKEELRLALLKT-------TSG-----ENLFLDRVFDLFDEKKNGVIEFEEFVRALS 137 (255)
Q Consensus 74 ~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~-------~~~-----~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~ 137 (255)
+++-.|.... |++|.++...|...|... +.. ..+.++..|... .....|+-++|+..+.
T Consensus 4 KyRylFslis---d~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~ 74 (90)
T PF09069_consen 4 KYRYLFSLIS---DSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLM 74 (90)
T ss_dssp HHHHHHHHHS----TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHH
Confidence 4555677764 389999999998887542 111 133456666664 1344577777777664
No 169
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=43.36 E-value=60 Score=24.30 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=25.6
Q ss_pred HHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCc
Q 025241 195 KTFADADADGDGKINREEWKSFALSHPTLLKNMTLPF 231 (255)
Q Consensus 195 ~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~ 231 (255)
..|+....+. ..++-+|++.++..+|.+++...+-.
T Consensus 62 ~~~k~l~~~~-~~ls~~e~i~ll~~~p~LikRPIi~~ 97 (131)
T PRK01655 62 KVFQKLNVDV-ESLSLQDLIKLISDNPGLLRRPIIID 97 (131)
T ss_pred HHHHhCCCCc-ccCCHHHHHHHHHhCcceEeCCEEEE
Confidence 3345555443 35889999999999999987665443
No 170
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=43.31 E-value=1.8e+02 Score=24.82 Aligned_cols=108 Identities=12% Similarity=0.190 Sum_probs=57.4
Q ss_pred HHHHHHhhcCCCCCCCcccHHHHHHH---HhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHH--
Q 025241 75 LYELFKELSSSLIDDGLIHKEELRLA---LLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKI-- 149 (255)
Q Consensus 75 l~~~F~~~d~~~d~~G~is~~e~~~~---l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~-- 149 (255)
+..+.-...+ -||.++..|+..+ +..++... ...+.+.+.+..-.....++++|+.-+...+.. ..+.+
T Consensus 58 ~~aLl~~vAk---ADG~Vse~Ei~~~~~l~~~~~l~~-~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~~--r~~l~~~ 131 (267)
T PRK09430 58 TFAVMGHLAK---AKGRVTEADIRIASQLMDRMNLHG-EARRAAQQAFREGKEPDFPLREKLRQFRSVCGG--RFDLLRM 131 (267)
T ss_pred HHHHHHHHHh---cCCCcCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcc--cHHHHHH
Confidence 4444445555 5999999999732 22234332 222233444444344558899999888766522 22222
Q ss_pred --HHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 025241 150 --DFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAII 193 (255)
Q Consensus 150 --~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~ 193 (255)
+.+|++-=.| |.++..|-.- +..+.. ...+++.+...+.
T Consensus 132 lL~~l~~vA~AD--G~l~~~E~~~-L~~Ia~--~Lgis~~df~~~~ 172 (267)
T PRK09430 132 FLEIQIQAAFAD--GSLHPNERQV-LYVIAE--ELGFSRFQFDQLL 172 (267)
T ss_pred HHHHHHHHHHhc--CCCCHHHHHH-HHHHHH--HcCCCHHHHHHHH
Confidence 4445554444 5677777443 222222 2356665555555
No 171
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=42.81 E-value=73 Score=22.33 Aligned_cols=26 Identities=8% Similarity=0.121 Sum_probs=12.5
Q ss_pred HHHHHHhcCCCCCceeHHHHHHHHHh
Q 025241 113 DRVFDLFDEKKNGVIEFEEFVRALSI 138 (255)
Q Consensus 113 ~~lf~~~d~~~~G~I~f~Ef~~~~~~ 138 (255)
.+++..+........++.+|...+..
T Consensus 40 ~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 40 AELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34444443333334556666665544
No 172
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=42.54 E-value=55 Score=30.32 Aligned_cols=133 Identities=20% Similarity=0.274 Sum_probs=83.7
Q ss_pred cccHHHHHHHHhc--cCCC--chhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCH
Q 025241 91 LIHKEELRLALLK--TTSG--ENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEP 166 (255)
Q Consensus 91 ~is~~e~~~~l~~--~~~~--~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~ 166 (255)
+.+..||.-.|-. +++. +..-+.-+|+..|.++=--|+..++...+..+. +.....-..| |.|+.
T Consensus 105 RaTvsemGPlLLsrlL~LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~------e~~~e~~~~y-----G~is~ 173 (502)
T PF05872_consen 105 RATVSEMGPLLLSRLLELNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVS------ENAKELSAEY-----GNISS 173 (502)
T ss_pred EeeHHhhchHHHHHHhccchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHH------hhHHHHHHHc-----CCccH
Confidence 5677888765533 2333 334578899999998877899999999988774 2333344455 77888
Q ss_pred HHHHHHHHHHH--HhcCC----CCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccCC
Q 025241 167 EQVRQMVVATL--QESGM----HLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVFP 240 (255)
Q Consensus 167 ~Ef~~~l~~~~--~~~g~----~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
.-.-.++++++ ...|- .-..-++++++ ..|.+|.|.|+.-+--..+ ..|.++..+-+-.+..+....|
T Consensus 174 aS~gaI~R~ll~LE~qG~d~FFGEPaldi~Dl~-----r~~~~GrG~IniL~a~~l~-~~P~LysTFLLwLLsELfe~LP 247 (502)
T PF05872_consen 174 ASIGAIQRALLVLEQQGGDQFFGEPALDIEDLM-----RTDADGRGVINILAADKLM-NSPKLYSTFLLWLLSELFEQLP 247 (502)
T ss_pred HHHHHHHHHHHHHHHcchHhhCCCccCCHHHHh-----ccCCCCCEEEEEEEhHhhh-hCcHHHHHHHHHHHHHHHHhCc
Confidence 88877777654 21221 11111345556 4688999999876665555 3666666665555555554444
No 173
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=40.74 E-value=1.1e+02 Score=22.90 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccCC
Q 025241 196 TFADADADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVFP 240 (255)
Q Consensus 196 ~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
.++..+.+. ..++-+|.+.+|..+|.+++...+-.=....-+||
T Consensus 62 ~~r~l~~~~-~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~ 105 (126)
T TIGR01616 62 RVKSGEVNP-DSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFD 105 (126)
T ss_pred HhhhCCCCc-ccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCC
Confidence 334555333 45889999999999999998775543222333444
No 174
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=40.60 E-value=94 Score=22.87 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=40.9
Q ss_pred CcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccCC
Q 025241 163 CIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVFP 240 (255)
Q Consensus 163 ~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
.++.+||.++ +...|.. .+++-.--...|++.+.+ ...++-++.+..+..+|.+++...+---..++-+||
T Consensus 37 ~~s~~eL~~~----l~~~g~~--~~~li~t~~~~~r~L~~~-~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG~~ 107 (117)
T COG1393 37 PPSREELKKI----LSKLGDG--VEELINTRGTTYRELNLD-KEDLSDEELIEALLENPSLIKRPIVVDNKKLRVGFN 107 (117)
T ss_pred CCCHHHHHHH----HHHcCcc--HHHHHHhccchHHHcCCc-ccccChHHHHHHHHhChhhccCCeEEeCCceEecCC
Confidence 4677777777 3334433 122212223445666733 346888899999999998777665443333444444
No 175
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=40.48 E-value=38 Score=21.52 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=19.5
Q ss_pred CCCCChhHHHHHHhcCCCCHHHHHHHHHH
Q 025241 50 KLRYTFNDLVRLANNSPFTINEVEALYEL 78 (255)
Q Consensus 50 ~~~l~~~~~~~l~~~~~~s~~~i~~l~~~ 78 (255)
+..+...++..++..++++.++++.|+..
T Consensus 20 h~~L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 20 HKQLQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp T----TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred cCCccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 45778889999999999999998887654
No 176
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=40.44 E-value=62 Score=23.58 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=27.8
Q ss_pred HHHhcCCCCCCcCHHHHHHHHHhChhhhhccCCCccccccccCC
Q 025241 197 FADADADGDGKINREEWKSFALSHPTLLKNMTLPFLKDMTTVFP 240 (255)
Q Consensus 197 f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 240 (255)
++....+. ..++-+|.+.+|..+|.+++...+-.-....-+||
T Consensus 62 ~r~~~~~~-~~ls~~e~~~ll~~~P~LikRPIv~~~~~~~vG~~ 104 (113)
T cd03033 62 VKSGEVVP-EALDEEEALALMIADPLLIRRPLMQVGDRRMVGFD 104 (113)
T ss_pred HHhcCCCc-cCCCHHHHHHHHHhCcceeeCCeEEECCEEEecCC
Confidence 34433332 35799999999999999998776543333333443
No 177
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=40.12 E-value=47 Score=24.04 Aligned_cols=65 Identities=23% Similarity=0.332 Sum_probs=37.1
Q ss_pred HHcCCCCCCCcCHHHHHHHHHHHH------HhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChh
Q 025241 154 RLYDLRETGCIEPEQVRQMVVATL------QESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPT 222 (255)
Q Consensus 154 ~~~D~d~dG~I~~~Ef~~~l~~~~------~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~ 222 (255)
++||...+-+|+.+++++++..-- ...|.+++...+-.|+ -+-...+...++.+=+..+++-+.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII----~E~E~~g~~~lp~~~L~qlIr~yg~ 80 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQII----AEEESGGEPVLSTDFLTQIIRFYGG 80 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHH----HHHHhCCCCCCCHHHHHHHHHHhCh
Confidence 467888888999999988763310 1234555555444444 3444455555665544445544433
No 178
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=40.09 E-value=13 Score=26.76 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=20.7
Q ss_pred CCcCHHHHHHHHHhChhhhhccCCCcc
Q 025241 206 GKINREEWKSFALSHPTLLKNMTLPFL 232 (255)
Q Consensus 206 G~Is~~EF~~~l~~~~~~~~~~~~~~~ 232 (255)
..++-+|++.++..+|.+++...+-.-
T Consensus 69 ~~~s~~e~i~~l~~~p~LikRPIi~~~ 95 (110)
T PF03960_consen 69 DDLSDEELIELLLENPKLIKRPIIVDG 95 (110)
T ss_dssp TTSBHHHHHHHHHHSGGGB-SSEEEET
T ss_pred hhhhhHHHHHHHHhChhheeCCEEEEC
Confidence 468999999999999999866544333
No 179
>PLN02228 Phosphoinositide phospholipase C
Probab=38.90 E-value=1.5e+02 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=21.3
Q ss_pred CcccHHHHHHHHhccCCC---chhHHHHHHHHhcCC----CCCceeHHHHHHHH
Q 025241 90 GLIHKEELRLALLKTTSG---ENLFLDRVFDLFDEK----KNGVIEFEEFVRAL 136 (255)
Q Consensus 90 G~is~~e~~~~l~~~~~~---~~~~~~~lf~~~d~~----~~G~I~f~Ef~~~~ 136 (255)
+.++.++|...|...... ....+..++..+... ..|.++.+.|..++
T Consensus 37 ~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 37 GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 456666666655543211 123345555554322 12345555554443
No 180
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=37.80 E-value=1.4e+02 Score=23.14 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=50.1
Q ss_pred hhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcC-CCCCHH
Q 025241 109 NLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESG-MHLSDE 187 (255)
Q Consensus 109 ~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g-~~~~~~ 187 (255)
..+++.+...-+.+.+|.|++..|...+...+. +.+..-|-. +...++.++++.++..+..... .....+
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lG-----dWIT~~~Lk----h~n~MSk~Qik~L~~~Ii~~akae~~dtE 152 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLG-----DWITKNFLK----HPNRMSKDQIKTLCEQIIEMAKAESSDTE 152 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHHhh-----hHHHHHHHh----ccchhhHHHHHHHHHHHHHHHhccCCchH
Confidence 344566666555566888999999999876541 344433332 3457899999888777654443 445556
Q ss_pred HHHHHHHHH
Q 025241 188 SLKAIIDKT 196 (255)
Q Consensus 188 ~~~~~~~~~ 196 (255)
..+.++.++
T Consensus 153 ~Ye~vwkKm 161 (175)
T PF04876_consen 153 HYEKVWKKM 161 (175)
T ss_pred HHHHHHHHh
Confidence 666666543
No 181
>PRK10026 arsenate reductase; Provisional
Probab=34.91 E-value=81 Score=24.10 Aligned_cols=60 Identities=17% Similarity=0.315 Sum_probs=35.4
Q ss_pred CcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChhhhhccCC
Q 025241 163 CIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFALSHPTLLKNMTL 229 (255)
Q Consensus 163 ~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~~~~~~~~ 229 (255)
.++.+|+..++ ...|. ....+-.--...|+....+.+ .++.++.+.+|..+|.+++...+
T Consensus 38 ppt~~eL~~~l----~~~g~--~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIKRPIi 97 (141)
T PRK10026 38 PPTRDELVKLI----ADMGI--SVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILINRPIV 97 (141)
T ss_pred CcCHHHHHHHH----HhCCC--CHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCccceeCcEE
Confidence 46666666663 32332 112121122234455554443 47999999999999999877654
No 182
>TIGR01673 holin_LLH phage holin, LL-H family. This model represents a putative phage holin from a number of phage and prophage regions of Gram-positive bacteria. Like other holins, it is small (about 100 amino acids) with stretches of hydrophobic sequence and is encoded adjacent to lytic enzymes.
Probab=34.31 E-value=1.8e+02 Score=21.10 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=41.1
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhc
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATLQESGM-HLSDESLKAIIDKTFADAD 201 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~-~~~~~~~~~~~~~~f~~~D 201 (255)
....+..+..++|-.-.++-...+...+...|. ++++.+++-.++.....+-
T Consensus 53 ~aVeq~~~~~~~G~~K~~~A~~~v~~~L~~~~i~~~t~~~i~~~IE~aV~~M~ 105 (108)
T TIGR01673 53 SAVQQNFNESGGGAEKLEQAFNYITEELKKAHIPKPSDAQIEGAIEAAVAEMK 105 (108)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHh
Confidence 344556666667888888888888888899997 9999999999988777654
No 183
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=31.39 E-value=1.1e+02 Score=20.24 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=28.3
Q ss_pred ceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHH
Q 025241 126 VIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVAT 176 (255)
Q Consensus 126 ~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~ 176 (255)
.+.|.-....+.... +..++..+...|+.=..+.|+.+||.+.++.+
T Consensus 8 ~~~F~~L~~~l~~~l----~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSKHL----PPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666666655443 23445555555544466788888888876554
No 184
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.39 E-value=91 Score=28.21 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=38.4
Q ss_pred HHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHH
Q 025241 76 YELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRAL 136 (255)
Q Consensus 76 ~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~ 136 (255)
-..|..+.+ -+|+|+-..-+..+.+..+ ++.-+-++|...|.|.||.++-+||...-
T Consensus 447 de~fy~l~p---~~gk~sg~~ak~~mv~skl-pnsvlgkiwklad~d~dg~ld~eefala~ 503 (532)
T KOG1954|consen 447 DEIFYTLSP---VNGKLSGRNAKKEMVKSKL-PNSVLGKIWKLADIDKDGMLDDEEFALAN 503 (532)
T ss_pred Hhhhhcccc---cCceeccchhHHHHHhccC-chhHHHhhhhhhcCCcccCcCHHHHHHHH
Confidence 345777766 5788887776655543211 23456788888888888888888886643
No 185
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=30.60 E-value=55 Score=23.81 Aligned_cols=25 Identities=16% Similarity=0.208 Sum_probs=20.4
Q ss_pred CCcCHHHHHHHHHhChhhhhccCCC
Q 025241 206 GKINREEWKSFALSHPTLLKNMTLP 230 (255)
Q Consensus 206 G~Is~~EF~~~l~~~~~~~~~~~~~ 230 (255)
..++-+|++.++..+|.+++...+-
T Consensus 73 ~~ls~~e~~~~i~~~p~LikRPIi~ 97 (117)
T TIGR01617 73 LDLSDKEALELLAEDPALLRRPLIV 97 (117)
T ss_pred ccCCHHHHHHHHHhCcceEecCEEE
Confidence 4589999999999999998666543
No 186
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=30.44 E-value=1.4e+02 Score=22.87 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=6.3
Q ss_pred CCceeHHHHHHHHH
Q 025241 124 NGVIEFEEFVRALS 137 (255)
Q Consensus 124 ~G~I~f~Ef~~~~~ 137 (255)
+|.++-+|-...+.
T Consensus 38 dg~~~~~e~~~~~~ 51 (144)
T COG3793 38 DGEVDSEEKQKMVQ 51 (144)
T ss_pred ccccChHHHHHHHH
Confidence 44444444444443
No 187
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=29.48 E-value=94 Score=27.82 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=41.4
Q ss_pred CceeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHH
Q 025241 125 GVIEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQ 178 (255)
Q Consensus 125 G~I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~ 178 (255)
-.++++.++....... .+...+..+.++...|.+++|.....++.+.+..++.
T Consensus 73 ~~~~l~k~~~~~~~~~-~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 73 DKMTLEKLVIAKATYE-KGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLK 125 (427)
T ss_pred ccchHHHHhhHHhhhc-cCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhh
Confidence 3578888777665554 4566788888899999999999999999988766543
No 188
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.92 E-value=1.2e+02 Score=18.22 Aligned_cols=31 Identities=23% Similarity=0.482 Sum_probs=21.9
Q ss_pred CCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 025241 161 TGCIEPEQVRQMVVATLQESGMHLSDESLKAIID 194 (255)
Q Consensus 161 dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~ 194 (255)
.|.|+ +.+.++.++ ...|..+++..++++++
T Consensus 15 ~GlI~--~~~~~l~~l-~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 15 RGLIS--EVKPLLDRL-QQAGFRISPKLIEEILR 45 (48)
T ss_pred cCChh--hHHHHHHHH-HHcCcccCHHHHHHHHH
Confidence 46776 677776664 77788888887776664
No 189
>PF13608 Potyvirid-P3: Protein P3 of Potyviral polyprotein
Probab=28.69 E-value=64 Score=29.74 Aligned_cols=51 Identities=12% Similarity=0.130 Sum_probs=28.9
Q ss_pred CCCcccHHHHHHHHhccCCCchhHHHHHHHHhc----CCCCCceeHHHHHHHHHh
Q 025241 88 DDGLIHKEELRLALLKTTSGENLFLDRVFDLFD----EKKNGVIEFEEFVRALSI 138 (255)
Q Consensus 88 ~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d----~~~~G~I~f~Ef~~~~~~ 138 (255)
.++.-+.+||...++.........++.++..-. ....+.+.+|..++++..
T Consensus 301 ~~~~pt~eEF~e~v~~~~p~L~~~~~~~~~~~~V~hQaK~~~e~~lEkIiAf~aL 355 (445)
T PF13608_consen 301 HGKLPTEEEFLEYVEEVNPELLEFAEEMIEEEEVEHQAKTASEKNLEKIIAFVAL 355 (445)
T ss_pred hCCCCCHHHHHHHHHhcCchHHHHHHHHhCCCcEEecCCChHHHHHHHHHHHHHH
Confidence 567889999999998654443334444431111 112345666666665544
No 190
>PLN02222 phosphoinositide phospholipase C 2
Probab=28.40 E-value=2.4e+02 Score=27.10 Aligned_cols=64 Identities=11% Similarity=0.243 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCC---chhHHHHHHHHhcC-CCCCceeHHHHHHHHH
Q 025241 67 FTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSG---ENLFLDRVFDLFDE-KKNGVIEFEEFVRALS 137 (255)
Q Consensus 67 ~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~---~~~~~~~lf~~~d~-~~~G~I~f~Ef~~~~~ 137 (255)
..++++..++ ..+. +++.++.++|...|...... ....++.+++.+.. .+.+.++++.|..++.
T Consensus 22 ~~~~ei~~if---~~~~----~~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 22 EAPREIKTIF---EKYS----ENGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred CCcHHHHHHH---HHhc----CCCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 3666655544 4443 24689999988888764322 23456777777532 2355688888888774
No 191
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=28.01 E-value=1.2e+02 Score=18.47 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHhChh
Q 025241 167 EQVRQMVVATLQESGMHLSDE---SLKAIIDKTFADADADGDGKINREEWKSFALSHPT 222 (255)
Q Consensus 167 ~Ef~~~l~~~~~~~g~~~~~~---~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~~~~~ 222 (255)
.+|..+..-+....|.+++.. .++.-+...... -|.=+|.+|...+...|+
T Consensus 3 ~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~-----~~~~~~~~y~~~L~~d~~ 56 (57)
T PF03705_consen 3 AEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRA-----LGLPSFAEYYELLRSDPD 56 (57)
T ss_dssp HHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHH-----HT---HHHHHHHHHH-T-
T ss_pred HHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHH-----cCCCCHHHHHHHHHhCCC
Confidence 455555555566777776654 344444332223 345689999999987764
No 192
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=27.76 E-value=86 Score=26.57 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=36.5
Q ss_pred CcCHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHH
Q 025241 163 CIEPEQVRQMVVA-TLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKS 215 (255)
Q Consensus 163 ~I~~~Ef~~~l~~-~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~ 215 (255)
.+++.++..+|.. .....|..++++++.-+.+++|..-....++.||+..|.+
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 5678889888764 3466789999999999999877665555678999999943
No 193
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=27.68 E-value=1.3e+02 Score=20.79 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHcCCCCCCCc
Q 025241 145 LEDKIDFAFRLYDLRETGCI 164 (255)
Q Consensus 145 ~~~~~~~~F~~~D~d~dG~I 164 (255)
+.+++..+|+++..|++..+
T Consensus 57 S~~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 57 SQMELEEAFRLYELNKDSEL 76 (83)
T ss_pred CHHHHHHHHHHHHhcCcccE
Confidence 46788888888888776544
No 194
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=27.60 E-value=1.7e+02 Score=18.64 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=28.2
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCCc----ccHHHHHHHHhccCCC
Q 025241 64 NSPFTINEVEALYELFKELSSSLIDDGL----IHKEELRLALLKTTSG 107 (255)
Q Consensus 64 ~~~~s~~~i~~l~~~F~~~d~~~d~~G~----is~~e~~~~l~~~~~~ 107 (255)
.+.||.++++.+...|... |+ .+..+...+...+++.
T Consensus 5 RT~Ft~~Q~~~Le~~fe~~-------~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEKL-------GWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCCCCHHHHHHHHHHHHHc-------CCCCCCCCHHHHHHHHHHhCCC
Confidence 5788999999999999764 55 7777777766666553
No 195
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=26.53 E-value=7.1e+02 Score=25.47 Aligned_cols=78 Identities=15% Similarity=0.160 Sum_probs=57.5
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCCC---------ChHHHHHHHHHHcCCCC----
Q 025241 94 KEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPST---------PLEDKIDFAFRLYDLRE---- 160 (255)
Q Consensus 94 ~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~~---------~~~~~~~~~F~~~D~d~---- 160 (255)
.+.|+.++.+ +...+.++++|..+..++..+++.+++..++..-.+.. .....+..+.+.|..|+
T Consensus 207 ~e~f~~~l~k--lcpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 207 LEKFYRLLNK--LCPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHHHHh--cCCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhh
Confidence 4445555553 33356799999999999888999999999997654221 23577888888887765
Q ss_pred CCCcCHHHHHHHH
Q 025241 161 TGCIEPEQVRQMV 173 (255)
Q Consensus 161 dG~I~~~Ef~~~l 173 (255)
.|.++.+-|...+
T Consensus 285 ~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYL 297 (1189)
T ss_pred ccccchhhhHHHh
Confidence 6889998888874
No 196
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.01 E-value=1.1e+02 Score=27.94 Aligned_cols=88 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCCCceeHHHHHHHHHhhCCCC---ChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 025241 122 KKNGVIEFEEFVRALSIFHPST---PLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFA 198 (255)
Q Consensus 122 ~~~G~I~f~Ef~~~~~~~~~~~---~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~ 198 (255)
.++...+-.||+......+..+ ...+.++.+-+.+|.|.+|.|..+|=-.++ ...+..+-....-.+-+
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFl---rEdmky~~~~~kr~~~f----- 111 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFL---REDMKYRDSTRKRSEKF----- 111 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHH---HHHhhcccchhhhhhhc-----
Q ss_pred HhcCCCCCCcCHHHHHHHHHhC
Q 025241 199 DADADGDGKINREEWKSFALSH 220 (255)
Q Consensus 199 ~~D~~~dG~Is~~EF~~~l~~~ 220 (255)
..| |..|+.+++-......
T Consensus 112 H~d---D~~ItVedLWeaW~~S 130 (575)
T KOG4403|consen 112 HGD---DKHITVEDLWEAWKES 130 (575)
T ss_pred cCC---ccceeHHHHHHHHHhh
No 197
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=25.16 E-value=4.3e+02 Score=22.46 Aligned_cols=75 Identities=16% Similarity=0.049 Sum_probs=46.0
Q ss_pred CCCCChhHHHHHH---hcCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhH----HHHHHHHhcCC
Q 025241 50 KLRYTFNDLVRLA---NNSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLF----LDRVFDLFDEK 122 (255)
Q Consensus 50 ~~~l~~~~~~~l~---~~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~----~~~lf~~~d~~ 122 (255)
++.++..|++... ....++.++.+.+..+|+.- +....+..++...++..-...... +.-+|...-.|
T Consensus 69 DG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~~lf~~~-----k~~~~~l~~~~~~~~~~~~~r~~l~~~lL~~l~~vA~AD 143 (267)
T PRK09430 69 KGRVTEADIRIASQLMDRMNLHGEARRAAQQAFREG-----KEPDFPLREKLRQFRSVCGGRFDLLRMFLEIQIQAAFAD 143 (267)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----cccCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 5688888887433 34677888888888999886 334477777776665432111122 34555665554
Q ss_pred CCCceeHHH
Q 025241 123 KNGVIEFEE 131 (255)
Q Consensus 123 ~~G~I~f~E 131 (255)
|.++-.|
T Consensus 144 --G~l~~~E 150 (267)
T PRK09430 144 --GSLHPNE 150 (267)
T ss_pred --CCCCHHH
Confidence 5566544
No 198
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=25.14 E-value=1.6e+02 Score=20.58 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=7.3
Q ss_pred CCCcccHHHHHHH
Q 025241 88 DDGLIHKEELRLA 100 (255)
Q Consensus 88 ~~G~is~~e~~~~ 100 (255)
-||.++.+|...+
T Consensus 15 aDG~v~~~E~~~i 27 (111)
T cd07176 15 ADGDIDDAELQAI 27 (111)
T ss_pred hccCCCHHHHHHH
Confidence 3566666665543
No 199
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=25.01 E-value=1.2e+02 Score=18.39 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=25.1
Q ss_pred CCCChhHHHHHHhcCCCCHHHHHHHHHHHHh
Q 025241 51 LRYTFNDLVRLANNSPFTINEVEALYELFKE 81 (255)
Q Consensus 51 ~~l~~~~~~~l~~~~~~s~~~i~~l~~~F~~ 81 (255)
...+.+++..+...+.++..+|..++..=..
T Consensus 23 ~~P~~~~~~~la~~~~l~~~qV~~WF~nrR~ 53 (59)
T cd00086 23 PYPSREEREELAKELGLTERQVKIWFQNRRA 53 (59)
T ss_pred CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3678899999999999999999988765433
No 200
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=24.85 E-value=1.9e+02 Score=21.35 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCCcccHHHHHHHHhcc--CCC-chhHHHHHHHHhcCCCCCceeHHHHHHHH
Q 025241 88 DDGLIHKEELRLALLKT--TSG-ENLFLDRVFDLFDEKKNGVIEFEEFVRAL 136 (255)
Q Consensus 88 ~~G~is~~e~~~~l~~~--~~~-~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~ 136 (255)
-||.++.+|...+..-+ ..+ .......+...++.-....+++.+++..+
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 87 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLREL 87 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 47777777766543322 111 12234455555544333445555555444
No 201
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=24.54 E-value=2.7e+02 Score=26.00 Aligned_cols=68 Identities=22% Similarity=0.328 Sum_probs=49.1
Q ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC-----CCCCCcCHHHHHHHHHhChh
Q 025241 150 DFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADA-----DGDGKINREEWKSFALSHPT 222 (255)
Q Consensus 150 ~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~-----~~dG~Is~~EF~~~l~~~~~ 222 (255)
..+|.+|-..+++.|..--|..+ +...|...++.-+.++++.+ +.+|+ ...+.++.+-|.+++..+-.
T Consensus 89 DLLFyLiaegq~ekipihKFiTA----LkstGLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI~sSI~ 161 (622)
T KOG0506|consen 89 DLLFYLIAEGQSEKIPIHKFITA----LKSTGLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCIFSSIV 161 (622)
T ss_pred hhhhHHhhcCCcCcccHHHHHHH----HHHcCCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhhccchh
Confidence 45677775555699999999888 66779888888888777654 33442 23457999999998765433
No 202
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=23.94 E-value=2.1e+02 Score=18.43 Aligned_cols=19 Identities=21% Similarity=0.060 Sum_probs=12.1
Q ss_pred HHhcCCCCCCcCHHHHHHH
Q 025241 198 ADADADGDGKINREEWKSF 216 (255)
Q Consensus 198 ~~~D~~~dG~Is~~EF~~~ 216 (255)
..+|...=|.-++.+|+..
T Consensus 38 ~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 38 PDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TT--TCCTTSSSHHHHHHT
T ss_pred CCCCccccCCCcHHHHHHh
Confidence 4677777788888887653
No 203
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=23.77 E-value=1.7e+02 Score=20.93 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=24.3
Q ss_pred HHHHhcCCCC-CCcCHHHHHHHHHhChhhhhccCCC
Q 025241 196 TFADADADGD-GKINREEWKSFALSHPTLLKNMTLP 230 (255)
Q Consensus 196 ~f~~~D~~~d-G~Is~~EF~~~l~~~~~~~~~~~~~ 230 (255)
.|+....+.. ..++-++.+.++..+|.+++...+-
T Consensus 62 ~~~~l~~~~~~~~~s~~e~~~~l~~~p~LikRPIi~ 97 (111)
T cd03036 62 SYRELGLKDKLPSLSEEEALELLSSDGMLIKRPFVV 97 (111)
T ss_pred hHHhCCcccccccCCHHHHHHHHHhCcCeeeCCEEE
Confidence 3445544322 2368899999999999999776554
No 204
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=23.55 E-value=1.4e+02 Score=17.29 Aligned_cols=29 Identities=7% Similarity=0.023 Sum_probs=21.0
Q ss_pred CCCChhHHHHHHhcCCCCHHHHHHHHHHH
Q 025241 51 LRYTFNDLVRLANNSPFTINEVEALYELF 79 (255)
Q Consensus 51 ~~l~~~~~~~l~~~~~~s~~~i~~l~~~F 79 (255)
+..+.++...+...+.++..++..++.--
T Consensus 9 PYPs~~ek~~L~~~tgls~~Qi~~WF~Na 37 (40)
T PF05920_consen 9 PYPSKEEKEELAKQTGLSRKQISNWFINA 37 (40)
T ss_dssp GS--HHHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 36778888899999999999988876543
No 205
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=23.17 E-value=2.5e+02 Score=19.12 Aligned_cols=51 Identities=18% Similarity=0.189 Sum_probs=30.9
Q ss_pred cCCCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHhccCCCchhHHHHHHHHhc
Q 025241 64 NSPFTINEVEALYELFKELSSSLIDDGLIHKEELRLALLKTTSGENLFLDRVFDLFD 120 (255)
Q Consensus 64 ~~~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d 120 (255)
...++.+++..+.++|+.+=. +..+.++-...+... ....+.++.+..-+.
T Consensus 25 R~Gfs~~~i~~l~~ayr~l~~-----~~~~~~~a~~~l~~~-~~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 25 RRGFSKEEISALRRAYRILFR-----SGLTLEEALEELEEE-YPDSPEVREIVDFIR 75 (83)
T ss_dssp HTTS-HHHHHHHHHHHHHHHT-----SSS-HHHHHHHHHHH-TTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence 456899999999999999853 225666665555541 122455566555443
No 206
>PLN02230 phosphoinositide phospholipase C 4
Probab=22.94 E-value=4.5e+02 Score=25.35 Aligned_cols=14 Identities=14% Similarity=0.254 Sum_probs=7.4
Q ss_pred CcccHHHHHHHHhc
Q 025241 90 GLIHKEELRLALLK 103 (255)
Q Consensus 90 G~is~~e~~~~l~~ 103 (255)
+.++.++|...|..
T Consensus 43 ~~mt~~~l~~FL~~ 56 (598)
T PLN02230 43 AHMSPEQLQKLMAE 56 (598)
T ss_pred CccCHHHHHHHHHH
Confidence 45555555555543
No 207
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=22.88 E-value=2.7e+02 Score=19.33 Aligned_cols=51 Identities=24% Similarity=0.139 Sum_probs=27.4
Q ss_pred CCcccHHHHHHHHhcc-CCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhh
Q 025241 89 DGLIHKEELRLALLKT-TSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIF 139 (255)
Q Consensus 89 ~G~is~~e~~~~l~~~-~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~ 139 (255)
.-.+...+|+.+|.+. +.....+...+=..+|-..++.|+-=||-.+....
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlF 71 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLF 71 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHH
Confidence 3456677776666552 33333445555556666666677666665555433
No 208
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=22.60 E-value=4.8e+02 Score=24.53 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=47.7
Q ss_pred HHHHHhcCcccCCC--CCCCCCChhHHHHHHhcC-CCCHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHh
Q 025241 34 DLIFSLTGCFDHHC--PPKLRYTFNDLVRLANNS-PFTINEVEALYELFKELSSSLIDDGLIHKEELRLALL 102 (255)
Q Consensus 34 ~~~~~~~~c~~~~~--~~~~~l~~~~~~~l~~~~-~~s~~~i~~l~~~F~~~d~~~d~~G~is~~e~~~~l~ 102 (255)
+..+.+-.|+.-.+ .|+.-++.+.++++.+.- .++.++.+.+++.++.+ +.|.|+-.++..-+.
T Consensus 86 ea~avldrcfyl~glprp~vgis~~~~~~i~~~g~~~~~~~~e~lr~~lh~y-----kkg~idgddl~~eia 152 (533)
T TIGR00470 86 EAMAVLDRCFYLAGLPRPDVGLGNEKIEIIENLGIDIDDEKKERLREVFHLY-----KKGAIDGDDLVFEIA 152 (533)
T ss_pred HHHHHHHHhhhhcCCCCCCcCcCHHHHHHHHHhCCCCChhHHHHHHHHHHHh-----hcCCCccchhHHHHH
Confidence 34455566876653 455678888888888743 57889999999999999 889999888865443
No 209
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=22.04 E-value=1.8e+02 Score=18.91 Aligned_cols=37 Identities=22% Similarity=0.356 Sum_probs=27.4
Q ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCC
Q 025241 160 ETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADG 204 (255)
Q Consensus 160 ~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~ 204 (255)
.++.++..++... +...|..++++.+...++ .++.+|
T Consensus 10 ~~~P~g~~~l~~~----L~~~g~~~se~avRrrLr----~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEE----LKLRGEELSEEAVRRRLR----AMERDG 46 (66)
T ss_pred cCCCCCHHHHHHH----HHhcChhhhHHHHHHHHH----HHHHCC
Confidence 4578999999888 555688888888877775 666643
No 210
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=20.85 E-value=3.2e+02 Score=19.43 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=42.5
Q ss_pred eeHHHHHHHHHhhCCCCChHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 025241 127 IEFEEFVRALSIFHPSTPLEDKIDFAFRLYDLRETGCIEPEQVRQMVVATLQESGMHLSDESLKAIID 194 (255)
Q Consensus 127 I~f~Ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~ 194 (255)
|.-.+|...+..+.+. .+++++..+-..+-.++...++..++..++.. ..+...++++++....
T Consensus 20 vP~~Dy~PLlALL~r~-Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~---vt~~~P~~~di~RV~~ 83 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRR-LTDDEVAEVAAELAARGDPPVDRIDIGVAITR---VTDELPTPEDIERVRA 83 (96)
T ss_dssp B-HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHH---HCSS-S-HHHHHHHHH
T ss_pred CCCCccHHHHHHhccc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH---HHcCCcCHHHHHHHHH
Confidence 6667777777777643 67788888877776677666788888888644 4566678887776664
No 211
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=20.70 E-value=2.4e+02 Score=19.15 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=35.8
Q ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHH-hChhhhhc
Q 025241 160 ETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGKINREEWKSFAL-SHPTLLKN 226 (255)
Q Consensus 160 ~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~Is~~EF~~~l~-~~~~~~~~ 226 (255)
+.|.|+.++...+. .........+++++ ... ..|..-+.-|..++. .+|.+.+-
T Consensus 26 ~~~Vit~e~~~~I~-------a~~T~~~kar~Lld----~l~--~kG~~A~~~F~~~L~e~~p~L~~~ 80 (82)
T cd08330 26 GKKVITQEQYSEVR-------AEKTNQEKMRKLFS----FVR--SWGASCKDIFYQILREEEPYLVED 80 (82)
T ss_pred HCCCCCHHHHHHHH-------cCCCcHHHHHHHHH----HHH--ccCHHHHHHHHHHHHHhChHHHhH
Confidence 45789998888762 22344555666663 333 367889999999997 56666543
No 212
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=20.64 E-value=1.8e+02 Score=28.20 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=55.8
Q ss_pred CCcccHHHHHHHHhccCCCchhHHHHHHHHhcCCCCCceeHHHHHHHHHhhCCC-------CChHHHHHHHHHHcCCCCC
Q 025241 89 DGLIHKEELRLALLKTTSGENLFLDRVFDLFDEKKNGVIEFEEFVRALSIFHPS-------TPLEDKIDFAFRLYDLRET 161 (255)
Q Consensus 89 ~G~is~~e~~~~l~~~~~~~~~~~~~lf~~~d~~~~G~I~f~Ef~~~~~~~~~~-------~~~~~~~~~~F~~~D~d~d 161 (255)
+| ++.+|+. -......+.++-+|.++|. ++|.++-+++...+...... ....+....++...|.++.
T Consensus 2 ~~-~~~~~~~----~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (646)
T KOG0039|consen 2 EG-ISFQELK----ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHK 75 (646)
T ss_pred CC-cchhhhc----ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccccc
Confidence 45 7888887 1223345668888888888 78889888888776553311 1223445567888899999
Q ss_pred CCcCHHHHHHHHH
Q 025241 162 GCIEPEQVRQMVV 174 (255)
Q Consensus 162 G~I~~~Ef~~~l~ 174 (255)
|++..+++..++.
T Consensus 76 ~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 76 GYITNEDLEILLL 88 (646)
T ss_pred ceeeecchhHHHH
Confidence 9999888888753
No 213
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.32 E-value=2.7e+02 Score=20.85 Aligned_cols=43 Identities=19% Similarity=0.304 Sum_probs=32.8
Q ss_pred CCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcCCCCCC
Q 025241 160 ETGCIEPEQVRQMVVATLQESGMHLSDESLKAIIDKTFADADADGDGK 207 (255)
Q Consensus 160 ~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~~~dG~ 207 (255)
..|.|+.+|-.++| ....+++.++++.-.+.+|+.=|+.+.|.
T Consensus 52 ~~~~iTlqEa~qIL-----nV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 52 SNGKITLQEAQQIL-----NVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred ccccccHHHHhhHh-----CCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 34669999888874 33457888889888899998888876663
No 214
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=20.06 E-value=1.6e+02 Score=21.72 Aligned_cols=33 Identities=21% Similarity=0.179 Sum_probs=17.4
Q ss_pred CCCCChhHHHHHHhcC----CCCHHHHHHHHHHHHhh
Q 025241 50 KLRYTFNDLVRLANNS----PFTINEVEALYELFKEL 82 (255)
Q Consensus 50 ~~~l~~~~~~~l~~~~----~~s~~~i~~l~~~F~~~ 82 (255)
++.++..|...+.... .++..+...+...+...
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~ 73 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADEL 73 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHH
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 7777777777666544 34455555554444444
Done!