BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 025242
         (255 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9US51|MTF1_SCHPO Mitochondrial transcription factor 1 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=mtf1 PE=3 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 67/171 (39%), Gaps = 22/171 (12%)

Query: 37  QSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQ----YQTYEDAFFSKVKDELVSAREH 92
           Q K   +  +R         L TL D  +  V Q    +QTYED + SKV D  +   E 
Sbjct: 83  QPKSHVVLESREVFSKPLQKLCTLSDGRIKWVHQDGYYWQTYEDVYVSKVLDPRIQTEEE 142

Query: 93  PAAATGVALT---------AGLLFMRGPRRFL----FRHTFGRLRSEEAMFVRAEKNVNE 139
              +    L          AGLLF+     FL    +   FGR+R    +++     V  
Sbjct: 143 QKLSPHRELLFFAHLPHGYAGLLFVSQILDFLSARDWLGIFGRVRV--LLWLPCSPTVTL 200

Query: 140 LNLSGELMKKESKKLLERAALAEKEMIRG-ETELKNAGNQVQRLAKQVYKV 189
           L   G    K SK  + R A  +  ++   E+ L+       + AK+ Y++
Sbjct: 201 LGSRG--FSKRSKTSVFREAFTDSRVLAASESTLQKLCMGYSKEAKENYQI 249


>sp|O50156|ATPD_STREI ATP synthase subunit delta OS=Streptococcus equinus GN=atpH PE=3
           SV=1
          Length = 178

 Score = 31.2 bits (69), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 12/79 (15%)

Query: 30  DLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKV-----KD 84
           D   S++ S+D  ++  R  Q +SS Y+    + +L      Q   +AF   +     KD
Sbjct: 47  DFLSSLVVSRDEKVKLVRLLQESSSVYMNNFLEVIL------QNEREAFLKAILEGVQKD 100

Query: 85  ELVSAREHP-AAATGVALT 102
            +++  +H     T VALT
Sbjct: 101 FVIATNQHDIVVTTAVALT 119


>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508
           / S288c) GN=TOP1 PE=1 SV=2
          Length = 769

 Score = 31.2 bits (69), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 147 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190
           +K+  +K+ E+    EKE+  GE ELK++ N V+++  QV K+E
Sbjct: 656 LKEWLEKVDEKKQEFEKELKTGEVELKSSWNSVEKIKAQVEKLE 699


>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
           GN=RAD54B PE=1 SV=1
          Length = 910

 Score = 30.8 bits (68), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 210 GKTVVGNLSDMVDNFNMQDKIFLTILICDRKGS---SLFHGSHLIL 252
           G+T +     +VD FN Q   F   L+  + G    +L  GSHLIL
Sbjct: 692 GQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLIL 737


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.131    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,598,024
Number of Sequences: 539616
Number of extensions: 2914124
Number of successful extensions: 10743
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 10707
Number of HSP's gapped (non-prelim): 63
length of query: 255
length of database: 191,569,459
effective HSP length: 115
effective length of query: 140
effective length of database: 129,513,619
effective search space: 18131906660
effective search space used: 18131906660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)