Query 025242
Match_columns 255
No_of_seqs 32 out of 34
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:55:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025242.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025242hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05957 DUF883: Bacterial pro 97.3 0.0021 4.6E-08 49.2 8.9 72 29-107 12-87 (94)
2 PRK10404 hypothetical protein; 96.5 0.019 4.2E-07 46.0 8.3 77 24-107 14-94 (101)
3 PRK10132 hypothetical protein; 95.4 0.11 2.4E-06 42.3 8.2 75 25-107 22-100 (108)
4 COG4575 ElaB Uncharacterized c 95.3 0.043 9.3E-07 45.1 5.6 77 24-107 17-97 (104)
5 PF04156 IncA: IncA protein; 91.8 3.7 7.9E-05 34.4 11.2 105 93-197 38-150 (191)
6 PRK11637 AmiB activator; Provi 91.3 3.3 7.2E-05 39.3 11.6 11 91-101 20-30 (428)
7 PRK09039 hypothetical protein; 88.3 5.4 0.00012 37.7 10.4 76 121-196 123-199 (343)
8 PF06008 Laminin_I: Laminin Do 84.5 15 0.00033 32.8 10.7 93 106-198 14-115 (264)
9 COG1579 Zn-ribbon protein, pos 82.9 11 0.00025 34.7 9.4 83 116-201 29-113 (239)
10 PF05957 DUF883: Bacterial pro 82.2 15 0.00033 28.1 8.5 49 59-110 46-94 (94)
11 PF10805 DUF2730: Protein of u 81.6 19 0.00041 28.8 9.2 90 88-180 4-96 (106)
12 PF00261 Tropomyosin: Tropomyo 80.8 17 0.00036 32.3 9.5 60 128-187 106-165 (237)
13 PRK08475 F0F1 ATP synthase sub 79.5 38 0.00081 28.8 13.0 120 81-202 6-140 (167)
14 PRK11637 AmiB activator; Provi 79.4 15 0.00032 35.1 9.2 59 130-188 77-135 (428)
15 PRK04654 sec-independent trans 78.0 19 0.00042 33.1 9.1 86 105-194 16-106 (214)
16 PRK14160 heat shock protein Gr 77.2 4.3 9.3E-05 36.7 4.7 100 125-235 51-152 (211)
17 COG4942 Membrane-bound metallo 72.1 41 0.0009 33.6 10.4 77 122-199 33-109 (420)
18 PF04156 IncA: IncA protein; 71.1 61 0.0013 27.1 11.1 94 97-190 49-150 (191)
19 PF11559 ADIP: Afadin- and alp 69.7 61 0.0013 26.6 10.6 41 140-180 64-104 (151)
20 PF12777 MT: Microtubule-bindi 67.8 66 0.0014 30.1 10.3 74 93-166 186-259 (344)
21 PF05700 BCAS2: Breast carcino 67.8 71 0.0015 28.3 10.1 72 126-197 141-216 (221)
22 PF09769 ApoO: Apolipoprotein 67.5 20 0.00043 29.9 6.3 69 49-121 50-127 (158)
23 PF06103 DUF948: Bacterial pro 65.3 57 0.0012 24.6 10.5 61 128-188 26-86 (90)
24 TIGR02977 phageshock_pspA phag 64.7 56 0.0012 28.7 8.8 71 130-203 47-125 (219)
25 PRK14161 heat shock protein Gr 60.1 87 0.0019 27.6 9.1 43 124-166 8-50 (178)
26 PRK14148 heat shock protein Gr 59.8 10 0.00022 33.9 3.3 91 144-235 42-134 (195)
27 COG1579 Zn-ribbon protein, pos 58.8 81 0.0018 29.3 9.0 70 130-200 47-119 (239)
28 PRK14154 heat shock protein Gr 58.7 9.1 0.0002 34.6 2.9 27 132-158 63-89 (208)
29 TIGR03185 DNA_S_dndD DNA sulfu 57.2 1.9E+02 0.0041 29.4 12.0 84 93-178 169-259 (650)
30 KOG2629 Peroxisomal membrane a 55.9 1.8E+02 0.004 28.2 11.0 102 103-207 96-198 (300)
31 PF10146 zf-C4H2: Zinc finger- 55.8 1.4E+02 0.0031 27.2 10.0 75 114-188 11-88 (230)
32 PF02388 FemAB: FemAB family; 55.2 83 0.0018 30.2 8.8 86 134-223 241-327 (406)
33 PF12718 Tropomyosin_1: Tropom 55.1 1.3E+02 0.0028 25.4 9.4 71 127-197 48-121 (143)
34 PRK00888 ftsB cell division pr 55.0 53 0.0012 26.4 6.4 23 188-210 66-88 (105)
35 KOG3564 GTPase-activating prot 54.5 91 0.002 32.5 9.3 91 107-201 11-108 (604)
36 KOG0994 Extracellular matrix g 54.0 4.2E+02 0.009 30.9 17.9 173 24-200 1554-1747(1758)
37 KOG1962 B-cell receptor-associ 52.8 92 0.002 28.7 8.3 69 120-189 120-191 (216)
38 PF10337 DUF2422: Protein of u 52.0 2E+02 0.0042 27.9 10.8 100 94-193 199-316 (459)
39 PF08898 DUF1843: Domain of un 51.7 22 0.00048 26.5 3.4 31 127-157 20-53 (53)
40 PF06005 DUF904: Protein of un 51.2 1.1E+02 0.0024 23.4 9.0 66 128-200 4-69 (72)
41 PHA02562 46 endonuclease subun 51.2 2.3E+02 0.0051 27.2 13.7 112 49-189 294-405 (562)
42 PF14235 DUF4337: Domain of un 51.1 39 0.00085 29.1 5.4 60 130-189 68-132 (157)
43 PF12329 TMF_DNA_bd: TATA elem 51.0 1.1E+02 0.0023 23.3 8.4 70 133-202 3-72 (74)
44 PRK14471 F0F1 ATP synthase sub 50.4 1.5E+02 0.0032 24.7 11.5 54 101-154 15-68 (164)
45 PRK15422 septal ring assembly 50.3 1.3E+02 0.0028 24.1 7.7 56 128-183 4-62 (79)
46 PF14635 HHH_7: Helix-hairpin- 49.7 5.7 0.00012 32.4 0.1 55 54-113 5-62 (104)
47 PRK06568 F0F1 ATP synthase sub 49.6 1.7E+02 0.0037 25.2 11.1 46 111-156 21-66 (154)
48 CHL00118 atpG ATP synthase CF0 49.4 1.5E+02 0.0033 24.6 11.4 60 96-155 24-83 (156)
49 PRK11677 hypothetical protein; 47.9 53 0.0011 28.0 5.6 61 95-160 8-68 (134)
50 PRK00708 sec-independent trans 47.6 1.9E+02 0.004 26.6 9.3 36 104-145 15-51 (209)
51 PF13815 Dzip-like_N: Iguana/D 47.1 1.5E+02 0.0033 23.8 7.9 54 129-182 60-113 (118)
52 PF03961 DUF342: Protein of un 47.0 1.9E+02 0.0041 28.0 9.8 87 128-217 334-424 (451)
53 PF07464 ApoLp-III: Apolipopho 45.6 1.7E+02 0.0037 25.4 8.4 117 29-189 6-136 (155)
54 TIGR02168 SMC_prok_B chromosom 45.0 2E+02 0.0043 29.6 10.1 14 187-200 925-938 (1179)
55 PF11382 DUF3186: Protein of u 44.7 81 0.0018 29.5 6.8 80 94-209 11-90 (308)
56 TIGR02449 conserved hypothetic 43.8 1.5E+02 0.0031 22.7 8.4 61 131-191 3-63 (65)
57 PRK14475 F0F1 ATP synthase sub 43.2 2E+02 0.0044 24.2 11.6 62 112-173 28-101 (167)
58 PF12889 DUF3829: Protein of u 43.0 2.2E+02 0.0049 24.7 11.1 103 108-225 152-266 (276)
59 PF15456 Uds1: Up-regulated Du 42.6 83 0.0018 26.3 5.9 39 143-182 23-61 (124)
60 PRK14150 heat shock protein Gr 42.4 26 0.00056 31.0 3.0 72 163-234 59-132 (193)
61 PF05384 DegS: Sensor protein 42.4 2.3E+02 0.0049 24.8 8.7 63 125-187 14-83 (159)
62 cd01127 TrwB Bacterial conjuga 42.2 4.3 9.3E-05 38.5 -1.9 74 163-243 1-82 (410)
63 PRK14143 heat shock protein Gr 41.7 33 0.00071 31.6 3.7 22 137-158 69-90 (238)
64 PF04100 Vps53_N: Vps53-like, 41.7 1.2E+02 0.0026 29.2 7.7 71 121-195 12-82 (383)
65 PRK14139 heat shock protein Gr 41.4 27 0.00059 31.0 3.1 24 135-158 32-55 (185)
66 PF09730 BicD: Microtubule-ass 40.8 1.6E+02 0.0034 31.5 8.8 73 127-202 358-430 (717)
67 PF10168 Nup88: Nuclear pore c 40.3 67 0.0014 33.8 6.1 63 130-192 641-714 (717)
68 PF14817 HAUS5: HAUS augmin-li 39.6 2.2E+02 0.0048 29.8 9.6 82 132-213 83-178 (632)
69 TIGR01069 mutS2 MutS2 family p 39.4 2E+02 0.0042 30.5 9.3 25 141-165 531-555 (771)
70 PRK10698 phage shock protein P 39.3 2.5E+02 0.0054 25.2 8.8 42 129-173 46-87 (222)
71 PRK00888 ftsB cell division pr 39.2 95 0.0021 24.9 5.6 29 128-156 34-62 (105)
72 cd07676 F-BAR_FBP17 The F-BAR 39.1 3.1E+02 0.0066 25.1 10.9 149 25-176 18-190 (253)
73 PRK08476 F0F1 ATP synthase sub 39.0 2.2E+02 0.0048 23.5 10.9 100 102-201 15-124 (141)
74 cd07678 F-BAR_FCHSD1 The F-BAR 38.8 3.3E+02 0.0072 25.5 13.1 140 25-165 18-160 (263)
75 TIGR00998 8a0101 efflux pump m 38.7 2.1E+02 0.0045 25.6 8.2 26 143-168 109-134 (334)
76 PRK14151 heat shock protein Gr 38.6 30 0.00065 30.3 2.8 10 233-242 150-159 (176)
77 PRK13454 F0F1 ATP synthase sub 38.5 2.6E+02 0.0056 24.1 10.6 50 104-153 41-90 (181)
78 PRK13460 F0F1 ATP synthase sub 38.5 2.4E+02 0.0053 23.8 11.5 57 99-155 21-77 (173)
79 PRK14158 heat shock protein Gr 38.4 36 0.00077 30.5 3.3 88 146-235 44-133 (194)
80 PRK14153 heat shock protein Gr 38.2 33 0.00072 30.7 3.1 91 135-233 33-125 (194)
81 PF12072 DUF3552: Domain of un 38.2 2.7E+02 0.0059 24.3 11.7 46 95-144 8-54 (201)
82 COG3883 Uncharacterized protei 37.9 3.6E+02 0.0078 25.6 10.0 91 110-203 19-110 (265)
83 PF11727 ISG65-75: Invariant s 37.4 3.1E+02 0.0068 25.2 9.3 89 114-202 59-161 (286)
84 PF12718 Tropomyosin_1: Tropom 37.3 2.5E+02 0.0054 23.6 9.3 75 130-204 30-107 (143)
85 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.9 2.3E+02 0.005 23.1 10.2 67 130-196 12-78 (132)
86 PRK07353 F0F1 ATP synthase sub 36.8 2.2E+02 0.0047 22.7 11.4 58 98-155 9-66 (140)
87 PF02646 RmuC: RmuC family; I 36.4 2.1E+02 0.0046 26.5 8.1 86 140-228 4-89 (304)
88 PRK13453 F0F1 ATP synthase sub 36.1 2.7E+02 0.0058 23.6 12.3 59 94-152 18-76 (173)
89 CHL00019 atpF ATP synthase CF0 36.0 2.7E+02 0.006 23.7 10.6 51 102-152 32-82 (184)
90 PRK15178 Vi polysaccharide exp 35.6 1.6E+02 0.0034 29.6 7.6 76 127-202 222-304 (434)
91 PF07246 Phlebovirus_NSM: Phle 35.2 1.3E+02 0.0027 28.7 6.5 55 117-175 188-242 (264)
92 PRK05759 F0F1 ATP synthase sub 35.1 2.4E+02 0.0053 22.8 11.6 100 101-203 11-123 (156)
93 KOG0250 DNA repair protein RAD 34.9 2.4E+02 0.0053 31.6 9.3 59 143-201 366-425 (1074)
94 PF00430 ATP-synt_B: ATP synth 34.8 2.1E+02 0.0046 22.1 10.5 94 111-207 16-122 (132)
95 PF15136 UPF0449: Uncharacteri 34.4 68 0.0015 26.3 4.1 31 155-185 66-96 (97)
96 PRK14156 heat shock protein Gr 34.3 35 0.00076 30.1 2.6 82 150-235 35-118 (177)
97 PHA02562 46 endonuclease subun 34.1 3.7E+02 0.0079 26.0 9.6 14 178-191 387-400 (562)
98 PRK14474 F0F1 ATP synthase sub 34.0 3.7E+02 0.0079 24.5 11.6 60 96-155 7-77 (250)
99 TIGR02169 SMC_prok_A chromosom 33.3 4.1E+02 0.0088 27.7 10.2 18 163-180 469-486 (1164)
100 TIGR03545 conserved hypothetic 33.3 2.6E+02 0.0057 28.7 8.8 36 106-145 146-181 (555)
101 PF05335 DUF745: Protein of un 33.2 3.6E+02 0.0077 24.1 12.6 37 122-158 138-174 (188)
102 PF11932 DUF3450: Protein of u 33.1 3.5E+02 0.0076 24.0 11.3 22 143-164 43-64 (251)
103 TIGR00984 3a0801s03tim44 mitoc 32.6 1.9E+02 0.0042 28.5 7.5 56 135-190 8-76 (378)
104 PRK14140 heat shock protein Gr 32.1 47 0.001 29.7 3.0 14 187-200 84-97 (191)
105 PRK11578 macrolide transporter 32.0 2.8E+02 0.006 25.7 8.1 21 130-150 108-128 (370)
106 PRK14162 heat shock protein Gr 32.0 46 0.00099 29.8 3.0 15 187-201 86-100 (194)
107 PF08717 nsp8: nsp8 replicase; 31.5 1.6E+02 0.0034 27.2 6.2 16 135-150 33-48 (199)
108 PRK14472 F0F1 ATP synthase sub 31.3 3.2E+02 0.0069 23.0 11.8 47 104-150 28-74 (175)
109 KOG0243 Kinesin-like protein [ 31.0 3.7E+02 0.008 30.2 9.9 144 20-203 373-544 (1041)
110 PF04977 DivIC: Septum formati 30.9 1.1E+02 0.0024 21.7 4.3 26 129-154 25-50 (80)
111 PRK14145 heat shock protein Gr 30.8 51 0.0011 29.7 3.0 88 144-235 47-136 (196)
112 CHL00088 apcB allophycocyanin 30.7 2E+02 0.0042 25.0 6.5 116 36-157 2-136 (161)
113 smart00435 TOPEUc DNA Topoisom 30.7 2.6E+02 0.0057 27.9 8.1 84 118-202 267-367 (391)
114 PF10046 BLOC1_2: Biogenesis o 30.3 2.7E+02 0.0059 21.9 9.5 70 127-200 27-96 (99)
115 PF10186 Atg14: UV radiation r 30.2 3.7E+02 0.008 23.4 10.1 75 127-201 69-143 (302)
116 PF11559 ADIP: Afadin- and alp 29.7 3.1E+02 0.0068 22.4 9.4 53 133-185 71-123 (151)
117 PRK08655 prephenate dehydrogen 29.5 5.4E+02 0.012 25.1 11.3 105 120-224 214-325 (437)
118 PRK14473 F0F1 ATP synthase sub 29.1 3.3E+02 0.0072 22.5 11.6 54 102-155 16-69 (164)
119 PRK03918 chromosome segregatio 28.6 5.6E+02 0.012 26.3 10.3 17 140-156 205-221 (880)
120 PF06120 Phage_HK97_TLTM: Tail 28.4 5.4E+02 0.012 24.7 17.6 41 24-65 33-80 (301)
121 PF08285 DPM3: Dolichol-phosph 28.3 38 0.00082 27.0 1.6 26 128-153 61-86 (91)
122 PF12777 MT: Microtubule-bindi 27.9 3E+02 0.0066 25.8 7.7 78 110-187 217-294 (344)
123 PF12732 YtxH: YtxH-like prote 27.7 2.5E+02 0.0054 20.6 8.5 17 97-113 9-25 (74)
124 cd00890 Prefoldin Prefoldin is 27.7 2.7E+02 0.0058 21.5 6.3 42 125-166 84-125 (129)
125 COG1196 Smc Chromosome segrega 27.7 4.8E+02 0.01 28.6 10.1 74 127-200 841-914 (1163)
126 PF11157 DUF2937: Protein of u 27.6 1.6E+02 0.0034 25.5 5.4 54 25-81 22-75 (167)
127 KOG4673 Transcription factor T 27.5 8.8E+02 0.019 26.9 15.5 170 28-201 614-792 (961)
128 PF02185 HR1: Hr1 repeat; Int 27.4 1.7E+02 0.0038 21.2 4.9 30 129-158 34-63 (70)
129 PF10498 IFT57: Intra-flagella 27.2 2.2E+02 0.0047 27.7 6.8 44 123-166 275-318 (359)
130 PF08657 DASH_Spc34: DASH comp 26.9 1.5E+02 0.0033 27.5 5.5 62 132-193 177-255 (259)
131 PF10211 Ax_dynein_light: Axon 26.9 4.2E+02 0.0092 23.2 8.0 34 132-165 124-157 (189)
132 KOG0976 Rho/Rac1-interacting s 26.8 4.6E+02 0.0099 29.5 9.6 127 60-203 46-174 (1265)
133 PF05278 PEARLI-4: Arabidopsis 26.7 5.3E+02 0.011 24.6 9.0 59 133-191 191-249 (269)
134 KOG4154 Arginine-rich protein 26.5 54 0.0012 29.2 2.4 30 94-123 7-42 (178)
135 KOG1174 Anaphase-promoting com 26.3 71 0.0015 33.0 3.5 134 55-196 355-511 (564)
136 PF05667 DUF812: Protein of un 26.2 5.5E+02 0.012 26.7 9.8 48 143-190 329-376 (594)
137 PF03904 DUF334: Domain of unk 26.2 5.3E+02 0.011 24.3 8.8 71 125-201 33-103 (230)
138 PRK02224 chromosome segregatio 26.2 6.1E+02 0.013 26.3 10.1 35 167-201 269-303 (880)
139 PF13600 DUF4140: N-terminal d 26.0 1.6E+02 0.0035 22.5 4.7 32 134-165 69-100 (104)
140 TIGR01144 ATP_synt_b ATP synth 25.9 3.5E+02 0.0076 21.7 10.6 45 111-155 12-56 (147)
141 PRK13729 conjugal transfer pil 25.9 1.7E+02 0.0036 30.0 6.0 27 128-154 69-95 (475)
142 PF06009 Laminin_II: Laminin D 25.8 23 0.00049 29.2 0.0 73 131-203 6-78 (138)
143 KOG3501 Molecular chaperone Pr 25.5 3.6E+02 0.0077 23.0 6.9 42 124-165 63-104 (114)
144 PF06698 DUF1192: Protein of u 25.2 1.1E+02 0.0023 23.0 3.5 21 136-156 22-42 (59)
145 PF04588 HIG_1_N: Hypoxia indu 25.2 43 0.00093 23.9 1.3 19 89-107 1-19 (54)
146 PF02646 RmuC: RmuC family; I 25.0 5E+02 0.011 24.1 8.5 65 140-204 231-295 (304)
147 PF04420 CHD5: CHD5-like prote 25.0 3.7E+02 0.0081 22.8 7.1 81 131-218 36-128 (161)
148 PRK10132 hypothetical protein; 24.8 3.9E+02 0.0084 21.9 7.8 37 67-110 71-107 (108)
149 PRK09343 prefoldin subunit bet 24.7 2.8E+02 0.0062 22.6 6.2 34 156-189 85-118 (121)
150 PF06717 DUF1202: Protein of u 24.6 1.4E+02 0.0031 28.9 5.0 45 127-171 137-181 (308)
151 COG2433 Uncharacterized conser 24.6 5E+02 0.011 27.8 9.2 37 129-165 430-466 (652)
152 KOG3875 Peroxisomal biogenesis 24.5 3.3E+02 0.0071 27.1 7.4 27 100-126 165-191 (362)
153 cd00089 HR1 Protein kinase C-r 24.4 1.2E+02 0.0025 22.3 3.6 28 129-156 43-70 (72)
154 PRK00409 recombination and DNA 24.2 8E+02 0.017 26.1 10.7 18 171-188 578-595 (782)
155 KOG1003 Actin filament-coating 24.0 5.9E+02 0.013 23.6 8.7 61 129-189 75-135 (205)
156 PF13805 Pil1: Eisosome compon 23.9 4.3E+02 0.0094 25.1 8.0 65 115-186 125-195 (271)
157 PF12709 Kinetocho_Slk19: Cent 23.8 2.4E+02 0.0052 22.8 5.4 34 132-165 46-79 (87)
158 PF02996 Prefoldin: Prefoldin 23.8 2.9E+02 0.0062 21.3 5.8 42 125-166 74-115 (120)
159 PF06109 HlyE: Haemolysin E (H 23.5 4.5E+02 0.0097 24.9 7.9 67 36-102 14-89 (299)
160 TIGR01843 type_I_hlyD type I s 23.5 5.7E+02 0.012 23.3 10.1 8 172-179 212-219 (423)
161 PF09442 DUF2018: Domain of un 23.4 1.1E+02 0.0023 24.3 3.3 25 142-166 16-40 (81)
162 PRK12472 hypothetical protein; 23.4 5E+02 0.011 27.0 8.7 52 131-182 200-251 (508)
163 PF07888 CALCOCO1: Calcium bin 23.2 4E+02 0.0087 27.8 8.1 56 142-197 283-338 (546)
164 PRK06285 chorismate mutase; Pr 22.9 1.9E+02 0.004 22.5 4.6 32 132-163 4-36 (96)
165 PF13094 CENP-Q: CENP-Q, a CEN 22.9 4.4E+02 0.0096 21.8 7.3 51 134-184 33-83 (160)
166 PLN02829 Probable galacturonos 22.9 2.2E+02 0.0049 30.2 6.4 92 75-167 181-279 (639)
167 cd00584 Prefoldin_alpha Prefol 22.8 2.3E+02 0.005 22.4 5.2 37 130-166 89-125 (129)
168 PRK04863 mukB cell division pr 22.8 6.6E+02 0.014 29.1 10.3 67 95-161 263-340 (1486)
169 KOG1709 Guanidinoacetate methy 22.6 78 0.0017 30.1 2.8 70 31-103 27-99 (271)
170 TIGR00606 rad50 rad50. This fa 22.6 7.1E+02 0.015 27.7 10.3 77 124-200 870-946 (1311)
171 TIGR02894 DNA_bind_RsfA transc 22.5 2.3E+02 0.005 25.2 5.5 35 132-166 108-142 (161)
172 PF01765 RRF: Ribosome recycli 22.4 4.8E+02 0.01 22.0 8.8 61 127-187 93-157 (165)
173 TIGR03752 conj_TIGR03752 integ 22.1 5E+02 0.011 26.7 8.4 93 93-185 7-134 (472)
174 CHL00089 apcF allophycocyanin 22.0 3.3E+02 0.0072 23.9 6.4 117 36-158 2-138 (169)
175 PF10112 Halogen_Hydrol: 5-bro 22.0 4E+02 0.0087 22.8 6.9 91 85-200 25-117 (199)
176 PF01873 eIF-5_eIF-2B: Domain 21.9 22 0.00048 29.6 -0.8 45 206-250 24-78 (125)
177 PF04632 FUSC: Fusaric acid re 21.9 2.9E+02 0.0062 27.2 6.6 72 96-167 138-210 (650)
178 PF11853 DUF3373: Protein of u 21.7 88 0.0019 31.9 3.2 44 130-195 20-63 (489)
179 PF07989 Microtub_assoc: Micro 21.6 3.1E+02 0.0067 21.0 5.5 35 131-165 39-73 (75)
180 KOG0977 Nuclear envelope prote 21.6 8.2E+02 0.018 25.6 9.9 37 167-203 180-216 (546)
181 PRK10325 heat shock protein Gr 21.5 75 0.0016 28.2 2.4 42 162-203 59-102 (197)
182 PF04791 LMBR1: LMBR1-like mem 21.5 3.2E+02 0.0069 26.0 6.7 15 99-115 175-189 (471)
183 PRK14146 heat shock protein Gr 21.4 4.7E+02 0.01 23.8 7.4 39 162-200 74-114 (215)
184 PF01872 RibD_C: RibD C-termin 21.3 92 0.002 26.0 2.8 54 192-251 126-182 (200)
185 smart00283 MA Methyl-accepting 21.3 4.8E+02 0.01 21.6 10.0 67 128-194 32-98 (262)
186 PRK03918 chromosome segregatio 21.2 8E+02 0.017 25.2 9.8 12 115-126 589-600 (880)
187 PF13997 YqjK: YqjK-like prote 21.1 1.3E+02 0.0028 22.9 3.3 32 81-115 28-59 (73)
188 PRK05431 seryl-tRNA synthetase 21.0 5.5E+02 0.012 25.1 8.3 72 129-201 29-104 (425)
189 PF06810 Phage_GP20: Phage min 21.0 3.2E+02 0.0069 23.3 6.0 41 127-167 33-76 (155)
190 TIGR01242 26Sp45 26S proteasom 21.0 2.5E+02 0.0054 26.0 5.7 78 145-226 2-81 (364)
191 PRK10869 recombination and rep 20.9 7.8E+02 0.017 24.9 9.6 85 111-202 303-388 (553)
192 PF08385 DHC_N1: Dynein heavy 20.8 7.6E+02 0.016 23.8 10.8 115 25-148 263-377 (579)
193 PF05701 WEMBL: Weak chloropla 20.8 4.8E+02 0.01 26.1 8.0 38 144-181 318-355 (522)
194 PRK01770 sec-independent trans 20.7 6.1E+02 0.013 22.6 8.5 19 105-123 16-35 (171)
195 PRK07352 F0F1 ATP synthase sub 20.6 5.2E+02 0.011 21.7 10.7 95 106-202 31-137 (174)
196 PF14257 DUF4349: Domain of un 20.6 3.7E+02 0.008 23.9 6.5 82 121-209 118-201 (262)
197 PF06305 DUF1049: Protein of u 20.3 1.1E+02 0.0023 21.7 2.5 11 97-107 28-38 (68)
198 PF12017 Tnp_P_element: Transp 20.3 4.3E+02 0.0094 24.3 7.1 36 124-159 6-42 (236)
199 COG0013 AlaS Alanyl-tRNA synth 20.2 1.3E+02 0.0028 32.9 4.2 56 31-92 573-633 (879)
200 PF02994 Transposase_22: L1 tr 20.1 4.3E+02 0.0093 25.4 7.3 54 148-208 143-196 (370)
201 COG4345 Uncharacterized protei 20.0 4.1E+02 0.0088 24.2 6.6 54 119-186 113-169 (181)
No 1
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=97.32 E-value=0.0021 Score=49.23 Aligned_cols=72 Identities=21% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHH----HHHhhCchhhHHHHHHHh
Q 025242 29 EDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDEL----VSAREHPAAATGVALTAG 104 (255)
Q Consensus 29 e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv----~vA~ehP~ia~g~a~~ag 104 (255)
++++..+.++.|.+-+.+..+++.-...+.++++.+.+ +-+.+-.+.++++ ..+++||+-+.|+|+++|
T Consensus 12 ~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~~V~e~P~~svgiAagvG 84 (94)
T PF05957_consen 12 ADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED-------AADQAREQAREAAEQTEDYVRENPWQSVGIAAGVG 84 (94)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 33444444444444444444554444444444444444 3333444444333 378999999999999999
Q ss_pred Hhh
Q 025242 105 LLF 107 (255)
Q Consensus 105 lLl 107 (255)
||+
T Consensus 85 ~ll 87 (94)
T PF05957_consen 85 FLL 87 (94)
T ss_pred HHH
Confidence 986
No 2
>PRK10404 hypothetical protein; Provisional
Probab=96.49 E-value=0.019 Score=46.04 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=53.2
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHH----HHHHhhCchhhHHH
Q 025242 24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDE----LVSAREHPAAATGV 99 (255)
Q Consensus 24 ~~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKeg----v~vA~ehP~ia~g~ 99 (255)
...-+++++.-+.++.+.+-+.+.++++.-...+..+++.+.+.. +.+..+.|++ -..+++||+-+.|+
T Consensus 14 l~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~-------~~~~~~~k~aa~~td~yV~e~Pw~avGi 86 (101)
T PRK10404 14 LTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQAS-------DSYYYRAKQAVYRADDYVHEKPWQGIGV 86 (101)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 445566677777777777777777777766666666665555444 4444444444 45889999999999
Q ss_pred HHHHhHhh
Q 025242 100 ALTAGLLF 107 (255)
Q Consensus 100 a~~aglLl 107 (255)
++++||++
T Consensus 87 aagvGlll 94 (101)
T PRK10404 87 GAAVGLVL 94 (101)
T ss_pred HHHHHHHH
Confidence 99999875
No 3
>PRK10132 hypothetical protein; Provisional
Probab=95.41 E-value=0.11 Score=42.33 Aligned_cols=75 Identities=15% Similarity=0.241 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH----HHhhCchhhHHHH
Q 025242 25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGVA 100 (255)
Q Consensus 25 ~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~----vA~ehP~ia~g~a 100 (255)
+.-+++++..+.++.+.+-+-+..+++.=...+...+ ..+...++. ..+.|+++. .+++||+-++|+|
T Consensus 22 ~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar-------~~l~~~~~~-~~~~~~a~~~~~~~V~~~Pw~svgia 93 (108)
T PRK10132 22 NQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETR-------ARMHGRTRV-QQAARDAVGCADTFVRERPWCSVGTA 93 (108)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-------HHHhhhHHH-HHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3445555555555555555555555544333444444 344434442 233444443 6778999999999
Q ss_pred HHHhHhh
Q 025242 101 LTAGLLF 107 (255)
Q Consensus 101 ~~aglLl 107 (255)
+++||++
T Consensus 94 agvG~ll 100 (108)
T PRK10132 94 AAVGIFI 100 (108)
T ss_pred HHHHHHH
Confidence 9988875
No 4
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.043 Score=45.14 Aligned_cols=77 Identities=25% Similarity=0.291 Sum_probs=51.0
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHH----HHhhCchhhHHH
Q 025242 24 AKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELV----SAREHPAAATGV 99 (255)
Q Consensus 24 ~~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~----vA~ehP~ia~g~ 99 (255)
...-++++..-+.++-+-|-+-+.+|+..--+-+.++++-+.+.. +......|+++. .+.+||+=++|+
T Consensus 17 l~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~-------d~v~~~sk~a~~~tD~yV~e~PWq~VGv 89 (104)
T COG4575 17 LQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTG-------DAVVQRSKAAADATDDYVRENPWQGVGV 89 (104)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 334455555555566555666666677655555555555555444 566666666664 789999999999
Q ss_pred HHHHhHhh
Q 025242 100 ALTAGLLF 107 (255)
Q Consensus 100 a~~aglLl 107 (255)
++++|||+
T Consensus 90 aAaVGlll 97 (104)
T COG4575 90 AAAVGLLL 97 (104)
T ss_pred HHHHHHHH
Confidence 99999875
No 5
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.83 E-value=3.7 Score=34.42 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=50.7
Q ss_pred chhhHHHHHHHhHhhcccchhHHHHHhhhc-ccch-------HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025242 93 PAAATGVALTAGLLFMRGPRRFLFRHTFGR-LRSE-------EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (255)
Q Consensus 93 P~ia~g~a~~aglLlLrgPRRfLyr~TlGR-FqSE-------EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeE 164 (255)
+.+.+++..++|++++..--.++....... .+.+ +.-+...++...++...++.+.+....+......-+++
T Consensus 38 s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~ 117 (191)
T PF04156_consen 38 SFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKED 117 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666655544444333221 1111 11333444444444444444444444444444444444
Q ss_pred HhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 025242 165 MIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197 (255)
Q Consensus 165 m~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~ 197 (255)
+...+..++.....++.+-.+...+++....|.
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555666666666555555555554
No 6
>PRK11637 AmiB activator; Provisional
Probab=91.28 E-value=3.3 Score=39.35 Aligned_cols=11 Identities=18% Similarity=0.075 Sum_probs=7.4
Q ss_pred hCchhhHHHHH
Q 025242 91 EHPAAATGVAL 101 (255)
Q Consensus 91 ehP~ia~g~a~ 101 (255)
-+|.+++.+.+
T Consensus 20 ~~~~~~~~ll~ 30 (428)
T PRK11637 20 IRPILYASVLS 30 (428)
T ss_pred hhhHHHHHHHH
Confidence 35888886644
No 7
>PRK09039 hypothetical protein; Validated
Probab=88.28 E-value=5.4 Score=37.69 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=66.3
Q ss_pred hcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH-HHHHHHhhhhh
Q 025242 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ-VYKVETQAAGI 196 (255)
Q Consensus 121 GRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s-vYKiE~~AagL 196 (255)
..+..+++..+.+...|.-|++-|+.+++.+..|+.....+|.+-.-=+.++..-+..|+..+-. +-.+++-...+
T Consensus 123 ~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 123 QELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 67888999999999999999999999999999999999999999988889999999999988744 55555554444
No 8
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.47 E-value=15 Score=32.77 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=63.5
Q ss_pred hhcccchhHHH---------HHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhH
Q 025242 106 LFMRGPRRFLF---------RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG 176 (255)
Q Consensus 106 LlLrgPRRfLy---------r~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG 176 (255)
..+|.|.+++| +.-.+.+..-...+...+.++..|.+.++.+.....+....+.....+-.+-...-..-.
T Consensus 14 ~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~ 93 (264)
T PF06008_consen 14 GAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLE 93 (264)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999998 333444455556788888888888888888888888887777776666666555555556
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q 025242 177 NQVQRLAKQVYKVETQAAGIVG 198 (255)
Q Consensus 177 ~QIq~L~~svYKiE~~AagL~D 198 (255)
..|+.+...|-.+-.++.+|=.
T Consensus 94 ~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 94 QFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHhCc
Confidence 6666666666655555555433
No 9
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.87 E-value=11 Score=34.74 Aligned_cols=83 Identities=12% Similarity=0.194 Sum_probs=49.3
Q ss_pred HHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHh--HHHHHHHHHHHHHHHHhh
Q 025242 116 FRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA--GNQVQRLAKQVYKVETQA 193 (255)
Q Consensus 116 yr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~a--G~QIq~L~~svYKiE~~A 193 (255)
++..+-..+ +.+.++-+.+..+...++.++++...++....-+++.+.+++.+|.+. -+++..|-..++..+.+.
T Consensus 29 ~~~~l~k~~---~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~ 105 (239)
T COG1579 29 IRKALKKAK---AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI 105 (239)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 344444443 445666666666677777777666666666666666666666666332 345555666666666666
Q ss_pred hhhhhhhc
Q 025242 194 AGIVGCIF 201 (255)
Q Consensus 194 agL~D~LR 201 (255)
..|.|.|.
T Consensus 106 ~~le~el~ 113 (239)
T COG1579 106 NSLEDELA 113 (239)
T ss_pred HHHHHHHH
Confidence 55555543
No 10
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=82.20 E-value=15 Score=28.08 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHhHhhccc
Q 025242 59 TLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRG 110 (255)
Q Consensus 59 ~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~aglLlLrg 110 (255)
++.+..+.+..+++......=..|++==..+ =++++|+++.+|+|+=||
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~s---vgiAagvG~llG~Ll~RR 94 (94)
T PF05957_consen 46 RAEDAADQAREQAREAAEQTEDYVRENPWQS---VGIAAGVGFLLGLLLRRR 94 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHChHHH---HHHHHHHHHHHHHHHhCC
Confidence 3444555555555555555555554432222 257889999999998654
No 11
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=81.65 E-value=19 Score=28.80 Aligned_cols=90 Identities=11% Similarity=0.157 Sum_probs=46.8
Q ss_pred HHhhC-chhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhh--HHHHHHHHHHHHHHHHH
Q 025242 88 SAREH-PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELM--KKESKKLLERAALAEKE 164 (255)
Q Consensus 88 vA~eh-P~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdll--k~Es~KL~eRaalAEeE 164 (255)
+-+.| |++.++++++.+++.+.=.|+|- +--++..=++-+..-+.++..+.+.++.+ +.+..+|.-+.+--+.+
T Consensus 4 ~~~~~w~ii~a~~~~~~~~~~~~l~~~~a---~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~ 80 (106)
T PF10805_consen 4 FIKKNWGIIWAVFGIAGGIFWLWLRRTYA---KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGE 80 (106)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhH
Confidence 34456 78888877777766655444432 22233222333444456666666666666 66666665555444444
Q ss_pred HhccHHHHHHhHHHHH
Q 025242 165 MIRGETELKNAGNQVQ 180 (255)
Q Consensus 165 m~RGrtkLr~aG~QIq 180 (255)
++.=...|+.-.++..
T Consensus 81 ~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 81 LKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4433333433333333
No 12
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.84 E-value=17 Score=32.29 Aligned_cols=60 Identities=27% Similarity=0.306 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY 187 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svY 187 (255)
.....++.++.+....+..+..++.+..+|+..+|.....=...|+..+..|+++--+.-
T Consensus 106 ~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 106 RRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 445666677777777777777777777777777777777777777777777776655443
No 13
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=79.53 E-value=38 Score=28.78 Aligned_cols=120 Identities=13% Similarity=-0.028 Sum_probs=64.9
Q ss_pred hHHHHHHHHhhCchhh---HHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH-
Q 025242 81 KVKDELVSAREHPAAA---TGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE- 156 (255)
Q Consensus 81 kIKegv~vA~ehP~ia---~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~e- 156 (255)
-+-.++..|.+||++- .-..+...++++--=..|||.-..+-+..=+..+..--.+.++.+..++.+..|.++.+.
T Consensus 6 ~~~~~~a~~~~~~~~~~~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~ 85 (167)
T PRK08475 6 LLLGFYAFAASLGATEQYDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEE 85 (167)
T ss_pred HHHHHHHHHcccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888887744 222233444444455669998888877766666655555555555555555555544432
Q ss_pred -----------HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025242 157 -----------RAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFF 202 (255)
Q Consensus 157 -----------RaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~ 202 (255)
.-..||.+..+-..+-+....++..-+.+.=..|+ ...+..++.
T Consensus 86 Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek--~~a~~elk~ 140 (167)
T PRK08475 86 AKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEV--RKMEREVVE 140 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 22344555444444445555555544444433343 334444443
No 14
>PRK11637 AmiB activator; Provisional
Probab=79.35 E-value=15 Score=35.08 Aligned_cols=59 Identities=5% Similarity=0.070 Sum_probs=28.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYK 188 (255)
++..+++++.+...++....+++++.+.....++++..=+.+|...-.++...++.+|+
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444555555555555555555555555555555
No 15
>PRK04654 sec-independent translocase; Provisional
Probab=77.96 E-value=19 Score=33.11 Aligned_cols=86 Identities=16% Similarity=0.248 Sum_probs=47.6
Q ss_pred HhhcccchhHH-HHHhhh----cccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHH
Q 025242 105 LLFMRGPRRFL-FRHTFG----RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQV 179 (255)
Q Consensus 105 lLlLrgPRRfL-yr~TlG----RFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QI 179 (255)
.|++-||-|+= +-+++| +|++ +++.....+++= ..++.++++.+++.+....++.+++.....|++++..+
T Consensus 16 ALlV~GPerLPe~aRtlGk~irk~R~---~~~~vk~El~~E-l~~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~ 91 (214)
T PRK04654 16 ALVVLGPERLPKAARFAGLWVRRARM---QWDSVKQELERE-LEAEELKRSLQDVQASLREAEDQLRNTQQQVEQGARAL 91 (214)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455777662 333444 4442 344444444322 12355666677777777777777777777777777776
Q ss_pred HHHHHHHHHHHHhhh
Q 025242 180 QRLAKQVYKVETQAA 194 (255)
Q Consensus 180 q~L~~svYKiE~~Aa 194 (255)
++..+.-+.+...+.
T Consensus 92 ~~~~~~~~~~~~~~~ 106 (214)
T PRK04654 92 HDDVSRDIDIRTSAT 106 (214)
T ss_pred hhhhhcccccccccc
Confidence 655544444433333
No 16
>PRK14160 heat shock protein GrpE; Provisional
Probab=77.17 E-value=4.3 Score=36.72 Aligned_cols=100 Identities=18% Similarity=0.159 Sum_probs=56.4
Q ss_pred chHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhcc
Q 025242 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFF 202 (255)
Q Consensus 125 SEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~ 202 (255)
|+|+.+...+..++.|++.++.+++|.+.+.++...+-.|| -+..+-.++-... -|.+++-+..|+..+-.
T Consensus 51 ~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aef-------eN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDn 123 (211)
T PRK14160 51 SNEVKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEY-------DNYRKRTAKEKEGIYSDACEDVLKELLPVLDN 123 (211)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 55666777777777777777777777777666654444444 3333333333222 35567777777665544
Q ss_pred ceeEEEecceecccchhhhhccCcccceeeeee
Q 025242 203 SSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTIL 235 (255)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (255)
..-.+-. .+...+++..+.|--+.|+.+|
T Consensus 124 LerAl~~----~~~~~~l~~Gv~mi~kql~~vL 152 (211)
T PRK14160 124 LERAAAV----EGSVEDLKKGIEMTVKQFKTSL 152 (211)
T ss_pred HHHHHhc----ccchhHHHHHHHHHHHHHHHHH
Confidence 3322211 2334566677777666666554
No 17
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=72.07 E-value=41 Score=33.63 Aligned_cols=77 Identities=14% Similarity=0.185 Sum_probs=60.7
Q ss_pred cccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Q 025242 122 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGC 199 (255)
Q Consensus 122 RFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~ 199 (255)
...++ ..++..+++.++++.++...+.+.+||++-..-.|+|+.+=...|++++..+..+-+.+-.++..=..|-+-
T Consensus 33 ~~a~~-~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 33 AAADD-KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444 668899999999999999999999999998888888888888888888877777777777666655554443
No 18
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=71.11 E-value=61 Score=27.14 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=64.1
Q ss_pred HHHHHHHhHhhc-ccchhHHHHHh-------hhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhcc
Q 025242 97 TGVALTAGLLFM-RGPRRFLFRHT-------FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRG 168 (255)
Q Consensus 97 ~g~a~~aglLlL-rgPRRfLyr~T-------lGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RG 168 (255)
+++..++|+..+ .+++.-.++.- -+.....+..++..+++..++...+..+.++..++.+--...+++++.-
T Consensus 49 g~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 128 (191)
T PF04156_consen 49 GVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSV 128 (191)
T ss_pred HHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555555433 33333333332 3588888999999999999999999888888888876666666666666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q 025242 169 ETELKNAGNQVQRLAKQVYKVE 190 (255)
Q Consensus 169 rtkLr~aG~QIq~L~~svYKiE 190 (255)
..++......+..+.+..-+..
T Consensus 129 ~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 129 EERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6776666666666666655555
No 19
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=69.70 E-value=61 Score=26.56 Aligned_cols=41 Identities=20% Similarity=0.280 Sum_probs=15.6
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHH
Q 025242 140 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQ 180 (255)
Q Consensus 140 Lr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq 180 (255)
+...++.+.+..++|.++.+.+|.++.--..+.++.-++++
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334433333333333333333333333333
No 20
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.80 E-value=66 Score=30.12 Aligned_cols=74 Identities=18% Similarity=0.110 Sum_probs=38.8
Q ss_pred chhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 93 PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 93 P~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
|-....+-.++|-|...--=-+-|+.+...-.--..-+..++++.++.+..++..+.+.+++.++...-+.++.
T Consensus 186 ~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~ 259 (344)
T PF12777_consen 186 PEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE 259 (344)
T ss_dssp HHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444556666665555455555555555555555555555555555544444444443
No 21
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=67.78 E-value=71 Score=28.31 Aligned_cols=72 Identities=22% Similarity=0.228 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH----HHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 025242 126 EEAMFVRAEKNVNELNLSGELMKKESKKLLERAA----LAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197 (255)
Q Consensus 126 EEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaa----lAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~ 197 (255)
=|+++...++..+.++..|+.+..+.+.-+..+. .-|.+.+.|-++--+....+..|-..+....++++-+.
T Consensus 141 Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 141 LEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999888775543 33455555555555555555555555555555555443
No 22
>PF09769 ApoO: Apolipoprotein O; InterPro: IPR019166 Apolipoproteins are proteins that binds to lipids. Members of this family promote cholesterol efflux from macrophage cells. They are present in various lipoprotein complexes, including HDL, LDL and VLDL. Apolipoprotein O is a 198 amino acids protein that contains a 23 amino acids long signal peptide. The apoprotein is secreted by a microsomal triglyceride transfer protein (MTTP)-dependent mechanism, probably as a VLDL-associated protein that is subsequently transferred to HDL. Apolipoprotein O is the first chondroitine sulphate chain containing apolipoprotein [].
Probab=67.49 E-value=20 Score=29.88 Aligned_cols=69 Identities=28% Similarity=0.317 Sum_probs=46.3
Q ss_pred hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCc------hhhHHHHHHHhHhhccc---chhHHHHHh
Q 025242 49 FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHP------AAATGVALTAGLLFMRG---PRRFLFRHT 119 (255)
Q Consensus 49 i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP------~ia~g~a~~aglLlLrg---PRRfLyr~T 119 (255)
+|..=..++..+++.++...+.|...|+.+=+.++. -+..| .+.+++++.+|+++-|+ ++||+|=-.
T Consensus 50 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~~~~~llP~~~~I~vaglaGsIlar~r~~~~R~~~P~~ 125 (158)
T PF09769_consen 50 AREFLQPYYSWAQDELNTVKSKYYNAERSVTSTIAS----LHPPPEELLPGLGYIGVAGLAGSILARRRGIFKRFLYPLA 125 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCCCcccCcceeeeehhhhheeeeeccCcchhhhHHHHH
Confidence 444455677888888999999998888765555444 33333 34567788888888773 556666555
Q ss_pred hh
Q 025242 120 FG 121 (255)
Q Consensus 120 lG 121 (255)
+|
T Consensus 126 ~g 127 (158)
T PF09769_consen 126 FG 127 (158)
T ss_pred HH
Confidence 44
No 23
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=65.28 E-value=57 Score=24.58 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=43.8
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYK 188 (255)
..++..++-++.++..++.+.+|...+.+.+-.--++....--++...-..+..+-.++..
T Consensus 26 ~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 26 KTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4588888899999999999999999998887777777666555555555555544444433
No 24
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=64.72 E-value=56 Score=28.74 Aligned_cols=71 Identities=21% Similarity=0.225 Sum_probs=39.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhH--------HHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAG--------NQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG--------~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
+.++-..-+.+...++.+..+.+++.++|..| ++.|+-.|--.+ .++.++-.++=..+.+...|...|+
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~A---l~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELA---LSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444566666777777777777776554 566666665444 4444444444445555555544444
Q ss_pred cc
Q 025242 202 FS 203 (255)
Q Consensus 202 ~~ 203 (255)
.+
T Consensus 124 ~L 125 (219)
T TIGR02977 124 KL 125 (219)
T ss_pred HH
Confidence 43
No 25
>PRK14161 heat shock protein GrpE; Provisional
Probab=60.08 E-value=87 Score=27.56 Aligned_cols=43 Identities=21% Similarity=0.156 Sum_probs=32.7
Q ss_pred cchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 124 qSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
.+||.+..-+++-|..++..++.++.|.+.+.++..-+--||.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~Aefe 50 (178)
T PRK14161 8 NNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEID 50 (178)
T ss_pred ccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888887777655554444
No 26
>PRK14148 heat shock protein GrpE; Provisional
Probab=59.76 E-value=10 Score=33.95 Aligned_cols=91 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccceeEEEecceecccchhhh
Q 025242 144 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMV 221 (255)
Q Consensus 144 vdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~~~~~~~~~~~~~~~~~~~ 221 (255)
++.+..+.++|++.+......++|-.++.-+..+-.++-... -|.+++-+..|++.+-..--.+-..+. -.+..+++
T Consensus 42 ~~~l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV~DnlerAl~~~~~-~~~~~~l~ 120 (195)
T PRK14148 42 LERAKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPVIDSIEQALKHEVK-LEEAIAMK 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc-chhHHHHH
Confidence 344444444444444444455555555555555555544443 356677777776655443322211111 12234455
Q ss_pred hccCcccceeeeee
Q 025242 222 DNFNMQDKIFLTIL 235 (255)
Q Consensus 222 ~~~~~~~~~~~~~~ 235 (255)
+-+.|-.+.|..+|
T Consensus 121 ~Gv~mi~k~l~~vL 134 (195)
T PRK14148 121 EGIELTAKMLVDIL 134 (195)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666555555443
No 27
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.80 E-value=81 Score=29.25 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHH---HHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE---LKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtk---Lr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
+...+.++++|+..+-.+..|++++.+|..-+|+.| -+-++ +++-.++++-+-+..-.+|...+.|++.+
T Consensus 47 ~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 47 LEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-SAVKDERELRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777777777777777 33333 33444555555555555555555555543
No 28
>PRK14154 heat shock protein GrpE; Provisional
Probab=58.72 E-value=9.1 Score=34.65 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRa 158 (255)
..++++.+|+...-.+.+|.+...+|+
T Consensus 63 ~le~e~~elkd~~lRl~ADfeNyRKR~ 89 (208)
T PRK14154 63 RMERKVDEYKTQYLRAQAEMDNLRKRI 89 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 29
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=57.24 E-value=1.9e+02 Score=29.37 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=37.2
Q ss_pred chhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH-------HHHHHHHHHH
Q 025242 93 PAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL-------ERAALAEKEM 165 (255)
Q Consensus 93 P~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~-------eRaalAEeEm 165 (255)
..+..++...+|+=++-+-+.-|=.. ..|..++. ..+.+.+++++|...++.+..+.+.+. .....++.+.
T Consensus 169 ~~l~~Ai~~LlGl~~~~~L~~dl~~~-~~~~~~~~-~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l 246 (650)
T TIGR03185 169 SLLKEAIEVLLGLDLIDRLAGDLTNV-LRRRKKSE-LPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSL 246 (650)
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHH-HHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566666666666544444332221 22233332 234444455555555444444444443 3444444444
Q ss_pred hccHHHHHHhHHH
Q 025242 166 IRGETELKNAGNQ 178 (255)
Q Consensus 166 ~RGrtkLr~aG~Q 178 (255)
..=+.++++.|..
T Consensus 247 ~~l~~~~~~~GG~ 259 (650)
T TIGR03185 247 ESLEKKFRSEGGD 259 (650)
T ss_pred HHHHHHHHHhcch
Confidence 4333334444433
No 30
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.90 E-value=1.8e+02 Score=28.19 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=77.3
Q ss_pred HhHhhcccchhHHHHHhhhcccc-hHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Q 025242 103 AGLLFMRGPRRFLFRHTFGRLRS-EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQR 181 (255)
Q Consensus 103 aglLlLrgPRRfLyr~TlGRFqS-EEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~ 181 (255)
..+=+-+.-|+|+..+-||-=++ -|+.-+.-+..+....++++.+-.|..++.++...--.|+-+--+.|.++-. .
T Consensus 96 i~y~~y~~~K~YV~P~~l~~~~~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~---~ 172 (300)
T KOG2629|consen 96 IAYAAYRFVKSYVLPRFLGESKDKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLV---Q 172 (300)
T ss_pred HHHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 34445677788999888888777 4555566666777788888888888888888888888888888888888755 4
Q ss_pred HHHHHHHHHHhhhhhhhhhccceeEE
Q 025242 182 LAKQVYKVETQAAGIVGCIFFSSIMI 207 (255)
Q Consensus 182 L~~svYKiE~~AagL~D~LR~~~~~~ 207 (255)
+-+.+-|+|+.-..++-.|-.|+-.+
T Consensus 173 ~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 173 LSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred hhhhHHHHHHHHHHHHHHHhcccccC
Confidence 45567788888888887777776554
No 31
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=55.84 E-value=1.4e+02 Score=27.22 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=49.8
Q ss_pred HHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHH---HHHHhHHHHHHHHHHHHH
Q 025242 114 FLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET---ELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 114 fLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrt---kLr~aG~QIq~L~~svYK 188 (255)
..|..+..++..|...+..-++-+++++..++.|..|-....|.+..-..+.-.=-+ .+++...+++.-|...|.
T Consensus 11 ~~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 11 LELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777788888888888888888899988888888888887777665554433222 233333344444444443
No 32
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=55.24 E-value=83 Score=30.17 Aligned_cols=86 Identities=19% Similarity=0.177 Sum_probs=53.6
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh-hccceeEEEecce
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGC-IFFSSIMIVVGKT 212 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~-LR~~~~~~~~~~~ 212 (255)
.+-.+.+.+.++.+.++.++|.++..... +=..++++.-.||.++.+.+-.++.--+.=-|. .-...+.|.-|.+
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~~~~~~~la~~l~~~~g~~ 316 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAEYGDEIPLAGALFIYYGDE 316 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SEEEEEEEEEEEETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceEEEEEEEEECCE
Confidence 34456667777777777777777655444 556788888888988888888777643333333 3334455666777
Q ss_pred ecccchhhhhc
Q 025242 213 VVGNLSDMVDN 223 (255)
Q Consensus 213 ~~~~~~~~~~~ 223 (255)
++--.+-+.+.
T Consensus 317 ~~yly~gs~~~ 327 (406)
T PF02388_consen 317 AYYLYGGSDEE 327 (406)
T ss_dssp EEEEEEEE-CG
T ss_pred EEEEECccchh
Confidence 76444444433
No 33
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=55.08 E-value=1.3e+02 Score=25.36 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=45.2
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHH---HHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 025242 127 EAMFVRAEKNVNELNLSGELMKK---ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~---Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~ 197 (255)
|.-+..++..+.+.+..++...+ ...-|..|..+-|+|+-+-..+|+.+...++..-..+-.+|++...|=
T Consensus 48 E~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le 121 (143)
T PF12718_consen 48 EEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALE 121 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555555555544443332 233466777777777777778888888888777777777777776653
No 34
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=55.03 E-value=53 Score=26.36 Aligned_cols=23 Identities=13% Similarity=0.138 Sum_probs=14.1
Q ss_pred HHHHhhhhhhhhhccceeEEEec
Q 025242 188 KVETQAAGIVGCIFFSSIMIVVG 210 (255)
Q Consensus 188 KiE~~AagL~D~LR~~~~~~~~~ 210 (255)
=+|..|..=+.-.+.--|++.+.
T Consensus 66 yiEe~AR~~Lg~vk~gEivy~~~ 88 (105)
T PRK00888 66 AIEERARNELGMVKPGETFYRIV 88 (105)
T ss_pred HHHHHHHHHcCCCCCCCEEEEeC
Confidence 35666666666666666666544
No 35
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=54.48 E-value=91 Score=32.51 Aligned_cols=91 Identities=25% Similarity=0.204 Sum_probs=71.1
Q ss_pred hcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Q 025242 107 FMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (255)
Q Consensus 107 lLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~sv 186 (255)
++-.|+|-. ..+|.|. |.-|-+--+--+....+-..+..|..|.++-.+-||.++--=-.||+.|.+||..+++.-
T Consensus 11 ~f~~l~r~~--~~l~~g~--e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~r 86 (604)
T KOG3564|consen 11 LFEQLVRDI--EILGEGN--EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRR 86 (604)
T ss_pred hHHHHHHHH--HHhcCcc--HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHH
Confidence 344444443 3567777 566777778888889999999999999999999999999888899999999999888764
Q ss_pred -------HHHHHhhhhhhhhhc
Q 025242 187 -------YKVETQAAGIVGCIF 201 (255)
Q Consensus 187 -------YKiE~~AagL~D~LR 201 (255)
-++|+|-.-++|-|+
T Consensus 87 r~ae~d~~~~E~~i~~i~d~l~ 108 (604)
T KOG3564|consen 87 RRAEADCEKLETQIQLIKDMLK 108 (604)
T ss_pred HHHhhhHHHHHHHHHHHHHHHh
Confidence 356677766666665
No 36
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.03 E-value=4.2e+02 Score=30.94 Aligned_cols=173 Identities=17% Similarity=0.159 Sum_probs=85.7
Q ss_pred cchHHHHHHHHHhHhh---HH---HHHhhhh-hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhH---------HHHHH
Q 025242 24 AKEWVEDLQRSVIQSK---DS---AIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKV---------KDELV 87 (255)
Q Consensus 24 ~~~w~e~~qkt~~es~---Ds---aI~sa~s-i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kI---------Kegv~ 87 (255)
+.+|.|+.+.++++-+ .. |--.|.. |+..+ ...+.+++-|..+.++-.+.|..++..- -++|.
T Consensus 1554 a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~-~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1554 ARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGAD-RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6689998887754433 22 2222333 55554 4578889999999999999999888652 23333
Q ss_pred -HHhhCchhhHHHHHHHhHhhcccchhHHHHHhhhcccc----hHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH
Q 025242 88 -SAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRS----EEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE 162 (255)
Q Consensus 88 -vA~ehP~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqS----EEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAE 162 (255)
-+..|-..+--+..++|-......+. +.++.-+|+ -+.|+.+--..+..-|+.++.|+.|.+||+-.+..-=
T Consensus 1633 ~~~~qns~~A~~a~~~a~sa~~~A~~a---~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl 1709 (1758)
T KOG0994|consen 1633 HKAAQNSAEAKQAEKTAGSAKEQALSA---EQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKL 1709 (1758)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333444333322221 111222221 1223322222233345566667777777754333333
Q ss_pred HHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 163 KEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 163 eEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
.+|+.=..+.-+.-.+|.+.+-.+-++|+....+++++
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I 1747 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHI 1747 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333333333333444444444444555555555543
No 37
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=52.80 E-value=92 Score=28.67 Aligned_cols=69 Identities=25% Similarity=0.216 Sum_probs=33.5
Q ss_pred hhcccchHHHHHHHHHhHHHHHHhHHhhH---HHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Q 025242 120 FGRLRSEEAMFVRAEKNVNELNLSGELMK---KESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 120 lGRFqSEEaLl~~Ae~~V~eLr~svdllk---~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
+++...+++. ..|.++-..++...+..+ .|..++.+.....|+|.+.+.++|.-+-++--.|.++.=+.
T Consensus 120 l~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~ 191 (216)
T KOG1962|consen 120 LRELATLRAN-EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGL 191 (216)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444443 445555555555554433 34444455555555555555555555555444444444333
No 38
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=52.00 E-value=2e+02 Score=27.86 Aligned_cols=100 Identities=13% Similarity=0.141 Sum_probs=70.7
Q ss_pred hhhHHHHHHHhHhhcccchhHHHHHhhhcccch-HHHHHHH--------------HHhHHHHHHhHHhhHHHHHHHHHHH
Q 025242 94 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSE-EAMFVRA--------------EKNVNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 94 ~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSE-EaLl~~A--------------e~~V~eLr~svdllk~Es~KL~eRa 158 (255)
++..|++++..++++|-+=+..+.+.+.-+..+ ...+... -.+.+.|+..+..+.+...+++-..
T Consensus 199 ~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l 278 (459)
T PF10337_consen 199 LIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAAL 278 (459)
T ss_pred HHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999998887766655433322 1112211 1355788888888889999999999
Q ss_pred HHHHHHHhccH---HHHHHhHHHHHHHHHHHHHHHHhh
Q 025242 159 ALAEKEMIRGE---TELKNAGNQVQRLAKQVYKVETQA 193 (255)
Q Consensus 159 alAEeEm~RGr---tkLr~aG~QIq~L~~svYKiE~~A 193 (255)
..+--|+-+|+ .+|+.--+-+|++...+..+..-.
T Consensus 279 ~~~~~Eis~grl~~~Dl~~i~~~lr~l~~~~~gL~~~~ 316 (459)
T PF10337_consen 279 RFLKLEISYGRLSPDDLKPIFSLLRSLMIPLSGLSSFC 316 (459)
T ss_pred HHHhhhHeeecCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 566766677777777666665533
No 39
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=51.70 E-value=22 Score=26.45 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHH---HHHHhHHhhHHHHHHHHHH
Q 025242 127 EAMFVRAEKNVN---ELNLSGELMKKESKKLLER 157 (255)
Q Consensus 127 EaLl~~Ae~~V~---eLr~svdllk~Es~KL~eR 157 (255)
.++...|++..+ +++..++.++.|+.||+.|
T Consensus 20 K~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 20 KALAAQAEQQLAEAGDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHHHHHhcC
Confidence 567788887765 6788999999999998754
No 40
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=51.25 E-value=1.1e+02 Score=23.43 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
.+|..=|.+|..+=.+|.+++.|.+.|.+.-.... ..+.+|+..-.+++.-- -....+-.+|+..|
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~----~e~~~L~~en~~L~~e~---~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELK----EENEELKEENEQLKQER---NAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 36778889999999999999999999988654443 44566666666665322 22333444444444
No 41
>PHA02562 46 endonuclease subunit; Provisional
Probab=51.18 E-value=2.3e+02 Score=27.25 Aligned_cols=112 Identities=12% Similarity=0.104 Sum_probs=72.4
Q ss_pred hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHhHhhcccchhHHHHHhhhcccchHH
Q 025242 49 FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEA 128 (255)
Q Consensus 49 i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEa 128 (255)
+.+. +..+..+.+-+.++.++++.+++..=+- ++-.. -|..-..++..-+.
T Consensus 294 ~~~~-~~~~~~l~d~i~~l~~~l~~l~~~i~~~-~~~~~---------------------------~~~~~~~~i~el~~ 344 (562)
T PHA02562 294 ISEG-PDRITKIKDKLKELQHSLEKLDTAIDEL-EEIMD---------------------------EFNEQSKKLLELKN 344 (562)
T ss_pred CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH---------------------------HHHHHHHHHHHHHH
Confidence 4444 7888888888888888888887765421 11110 13333444455556
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
.+......+.++......+++|.++|.++..-.|+++.+=..+|.+...++..+.+..+..
T Consensus 345 ~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 345 KISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666677777777777888888877777777777776667766666666665555443
No 42
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=51.11 E-value=39 Score=29.06 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=43.3
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH-----hccHHHHHHhHHHHHHHHHHHHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM-----IRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm-----~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
-...++++++++...+..+.|.++|++++..+|++- +.-+-.+-.+-=||-=++.|+.=+
T Consensus 68 ~~~~~~~i~~Y~~~~~~~~~e~~~l~~~A~~~e~~~d~~~~~~~~f~~a~~~lQIaI~Lasit~L 132 (157)
T PF14235_consen 68 RAAYQKKIARYKKEKARYKSEAEELEAKAKEAEAESDHALHHHHRFDLAVALLQIAIVLASITAL 132 (157)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999999999999999988887653 334455666666666666665433
No 43
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.00 E-value=1.1e+02 Score=23.28 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=55.5
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025242 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFF 202 (255)
Q Consensus 133 Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~ 202 (255)
.++.+.|=-..|..+..|.++|-..-..-..-.+.=|.+....-++|..+-+.+-+.|.....|.+.|+.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566677777888888888888877777777777778888888888888888888888888888777653
No 44
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=50.35 E-value=1.5e+02 Score=24.65 Aligned_cols=54 Identities=13% Similarity=0.212 Sum_probs=37.4
Q ss_pred HHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025242 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKL 154 (255)
Q Consensus 101 ~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL 154 (255)
++..++++--=.+|||.-..+-+..=+..+...-...++.+..++.+..|.++.
T Consensus 15 ~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~ 68 (164)
T PRK14471 15 TILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERL 68 (164)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444578999999999888777777777667777766666666666554
No 45
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=50.32 E-value=1.3e+02 Score=24.06 Aligned_cols=56 Identities=20% Similarity=0.248 Sum_probs=44.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH---HhccHHHHHHhHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE---MIRGETELKNAGNQVQRLA 183 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeE---m~RGrtkLr~aG~QIq~L~ 183 (255)
.+|..-|.||+..=.+|.+++-|++.|.+.-.....| ...||..|.+.-.|++.--
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3678889999999999999999999998765555554 5568888988888887543
No 46
>PF14635 HHH_7: Helix-hairpin-helix motif ; PDB: 3PSI_A 3PSF_A.
Probab=49.71 E-value=5.7 Score=32.44 Aligned_cols=55 Identities=33% Similarity=0.449 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHhH-HHHHH--HHhhCchhhHHHHHHHhHhhcccchh
Q 025242 54 STYLQTLQDFVLHGVSQYQTYEDAFFSKV-KDELV--SAREHPAAATGVALTAGLLFMRGPRR 113 (255)
Q Consensus 54 s~h~~~~qd~l~~~~sqY~ayEd~fF~kI-Kegv~--vA~ehP~ia~g~a~~aglLlLrgPRR 113 (255)
+..|+.+|+++|. ..-+.++|..|...+ .-||+ .|..||+.+..+=-+.|| |||.
T Consensus 5 sl~lHplQ~~l~~-d~L~~~le~~~vd~vN~vGVDIN~a~~~~~~~~~LqfV~GL----GPRK 62 (104)
T PF14635_consen 5 SLKLHPLQDLLPK-DKLLEALERAFVDVVNQVGVDINRAVSHPHLANLLQFVCGL----GPRK 62 (104)
T ss_dssp TS---TTGGGS-H-HHHHHHHHHHHHHHHHHH-EEHHHHCT-HHHHGGGGGSTT------HHH
T ss_pred eeecCcchhhCCH-HHHHHHHHHHHHHHHHhhCccHHHHhcChHHHhhHhHhcCC----ChHH
Confidence 4567788888884 345678999999998 66655 899999998877777776 7874
No 47
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=49.61 E-value=1.7e+02 Score=25.23 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=40.6
Q ss_pred chhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025242 111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 111 PRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~e 156 (255)
-+.|+|.-..+.+..=+..+...-.+.+.+|+.++.+++|.++.+.
T Consensus 21 l~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~ 66 (154)
T PRK06568 21 IYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIK 66 (154)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999998888889999999998888887763
No 48
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.44 E-value=1.5e+02 Score=24.60 Aligned_cols=60 Identities=13% Similarity=0.114 Sum_probs=39.8
Q ss_pred hHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025242 96 ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 155 (255)
Q Consensus 96 a~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~ 155 (255)
+...-++..++++---++|||.-..+-+..=+..+...-.+.++.+..++.+..|.++.+
T Consensus 24 t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L 83 (156)
T CHL00118 24 TLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQEL 83 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555589999998888777777777766666666666666666665554
No 49
>PRK11677 hypothetical protein; Provisional
Probab=47.90 E-value=53 Score=27.97 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=36.7
Q ss_pred hhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHH
Q 025242 95 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL 160 (255)
Q Consensus 95 ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaal 160 (255)
++-.+++++|+++.|-.-+ +. ..=++=|.-+..++.+.+++|+.+...=.++.+|++.++-
T Consensus 8 i~livG~iiG~~~~R~~~~----~~-~~q~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~ 68 (134)
T PRK11677 8 IGLVVGIIIGAVAMRFGNR----KL-RQQQALQYELEKNKAELEEYRQELVSHFARSAELLDTMAK 68 (134)
T ss_pred HHHHHHHHHHHHHHhhccc----hh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666543211 11 1223335667778888888888888888888888776553
No 50
>PRK00708 sec-independent translocase; Provisional
Probab=47.56 E-value=1.9e+02 Score=26.59 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=18.7
Q ss_pred hHhhcccchhHH-HHHhhhcccchHHHHHHHHHhHHHHHHhHH
Q 025242 104 GLLFMRGPRRFL-FRHTFGRLRSEEAMFVRAEKNVNELNLSGE 145 (255)
Q Consensus 104 glLlLrgPRRfL-yr~TlGRFqSEEaLl~~Ae~~V~eLr~svd 145 (255)
-.|++-||.++= .-+++|++ +.++.+-+++++..++
T Consensus 15 VaLvV~GPkrLP~~~R~lGk~------v~k~R~~a~e~r~~~~ 51 (209)
T PRK00708 15 VLIVVVGPKDLPPMLRAFGKM------TARMRKMAGEFRRQFD 51 (209)
T ss_pred HHHhhcCchHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 344566788763 44566665 3333344444444443
No 51
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=47.07 E-value=1.5e+02 Score=23.82 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=42.3
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L 182 (255)
||.=|+--++=|=.+-+-+......|.++...+..+..+-+.+++....+|+.|
T Consensus 60 lfrLaQl~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~l 113 (118)
T PF13815_consen 60 LFRLAQLSIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKL 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777888888888888888888888877777777777665
No 52
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=47.02 E-value=1.9e+02 Score=28.03 Aligned_cols=87 Identities=21% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH--HHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccc--
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALA--EKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFS-- 203 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalA--EeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~-- 203 (255)
..+...++++++++..++.+++..+++.+..... ..+...=..+|++. ...+...+-+++.+-..|.+.|..+
T Consensus 334 ~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~---~~~l~~~~~~l~~~~~~l~~~l~~~~~ 410 (451)
T PF03961_consen 334 EKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEK---KKELKEELKELKEELKELKEELERSYK 410 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445556666666666666666666665422100 00111111122222 2222333333444444555555554
Q ss_pred eeEEEecceecccc
Q 025242 204 SIMIVVGKTVVGNL 217 (255)
Q Consensus 204 ~~~~~~~~~~~~~~ 217 (255)
...|.|.+++..+.
T Consensus 411 ~~~I~v~~~vypgv 424 (451)
T PF03961_consen 411 EARIKVRKRVYPGV 424 (451)
T ss_pred ceEEEECCEEECCE
Confidence 55888888876654
No 53
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=45.58 E-value=1.7e+02 Score=25.39 Aligned_cols=117 Identities=15% Similarity=0.231 Sum_probs=68.7
Q ss_pred HHHHHHHhHhhHHHH------HhhhhhcccChHHHHHHHHHHHHHHHHHHh---HHHHHH----HhHHHHHH-HHhhCch
Q 025242 29 EDLQRSVIQSKDSAI------RSARSFQHNSSTYLQTLQDFVLHGVSQYQT---YEDAFF----SKVKDELV-SAREHPA 94 (255)
Q Consensus 29 e~~qkt~~es~DsaI------~sa~si~~tSs~h~~~~qd~l~~~~sqY~a---yEd~fF----~kIKegv~-vA~ehP~ 94 (255)
...++++++.+++.. +.-++|...|.....+++++.+-+.++.+. .=+.++ .+|.+.+. +-..||.
T Consensus 6 ~e~~~~~~~~~~~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~~~L~k~~Pe 85 (155)
T PF07464_consen 6 QEFQKEFQEQVNKLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETAEKLRKANPE 85 (155)
T ss_dssp HHHHHHHHHHHHHHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHHHGGGG-SHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHhcChH
Confidence 345555555555554 334458889999999999998888888876 222233 33333333 2235664
Q ss_pred hhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 025242 95 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN 174 (255)
Q Consensus 95 ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~ 174 (255)
+. ..|..=-..|...++.+-.|++|+-+.+.- ++..
T Consensus 86 v~----------------------------------~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~----------~~~~ 121 (155)
T PF07464_consen 86 VE----------------------------------KQANELQEKLQSAVQSLVQESQKLAKEVSE----------NSEG 121 (155)
T ss_dssp HH----------------------------------HT-SSSHHHHHHHHHHHHHHHHHHHHHHHS-------------S
T ss_pred HH----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHh
Confidence 43 333444455666777788888888766542 3445
Q ss_pred hHHHHHHHHHHHHHH
Q 025242 175 AGNQVQRLAKQVYKV 189 (255)
Q Consensus 175 aG~QIq~L~~svYKi 189 (255)
+...|+..++.+|..
T Consensus 122 ~~e~l~~~~K~~~D~ 136 (155)
T PF07464_consen 122 ANEKLQPAIKQAYDD 136 (155)
T ss_dssp S-GGGHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 566777777777765
No 54
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=45.02 E-value=2e+02 Score=29.57 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=5.1
Q ss_pred HHHHHhhhhhhhhh
Q 025242 187 YKVETQAAGIVGCI 200 (255)
Q Consensus 187 YKiE~~AagL~D~L 200 (255)
-+++.+...+...|
T Consensus 925 ~~~~~~~~~l~~~l 938 (1179)
T TIGR02168 925 AQLELRLEGLEVRI 938 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 55
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=44.74 E-value=81 Score=29.45 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=54.2
Q ss_pred hhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHH
Q 025242 94 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (255)
Q Consensus 94 ~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr 173 (255)
.++..+|.+.|+++=-+| =.+.+.+.-+.++.+||+..+.++.|.+.+..+...++. |
T Consensus 11 l~aVFlALavGI~lG~~~-------------l~~~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~-f-------- 68 (308)
T PF11382_consen 11 LAAVFLALAVGIVLGSGP-------------LQPNLIDSLEDQFDSLREENDELRAELDALQAQLNAADQ-F-------- 68 (308)
T ss_pred HHHHHHHHHHHHHhcchh-------------hchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--------
Confidence 355666777777665555 356788888899999999888888888888766554432 1
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhhccceeEEEe
Q 025242 174 NAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVV 209 (255)
Q Consensus 174 ~aG~QIq~L~~svYKiE~~AagL~D~LR~~~~~~~~ 209 (255)
+.. -...=+.+.|...++.||.
T Consensus 69 -----~~~---------~~~~lv~g~L~g~~V~vV~ 90 (308)
T PF11382_consen 69 -----IAA---------VAPRLVAGRLTGRSVAVVT 90 (308)
T ss_pred -----HHH---------HHHHHhcCccCCCEEEEEE
Confidence 111 1223356778888888887
No 56
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=43.79 E-value=1.5e+02 Score=22.72 Aligned_cols=61 Identities=16% Similarity=0.098 Sum_probs=49.6
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
..-+.+|..|=.-.+.++.|=..|.+..+..+.|=-.=..|.-.|...|..+|.....+|.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4456788888888888888888888888887777777777888899999999998887774
No 57
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=43.20 E-value=2e+02 Score=24.17 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=30.7
Q ss_pred hhHHHHHhhhcccchHH-----------HHHHHHHhHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHhccHHHHH
Q 025242 112 RRFLFRHTFGRLRSEEA-----------MFVRAEKNVNELNLSGELMKKESKKLLERA-ALAEKEMIRGETELK 173 (255)
Q Consensus 112 RRfLyr~TlGRFqSEEa-----------Ll~~Ae~~V~eLr~svdllk~Es~KL~eRa-alAEeEm~RGrtkLr 173 (255)
.+|||.-..+.+..=.. .-..|+...++++..+...+.|.+.+.+.+ ..|+.+...-..+.+
T Consensus 28 ~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~ 101 (167)
T PRK14475 28 LKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLE 101 (167)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37888766655543333 334444445555555555555555554332 334444444444333
No 58
>PF12889 DUF3829: Protein of unknown function (DUF3829); InterPro: IPR024291 This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins (PF06386 from PFAM).; PDB: 3RH3_B 3IEE_A.
Probab=43.04 E-value=2.2e+02 Score=24.69 Aligned_cols=103 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred cccchhHHHHHhhhcccchHHHHHHHHHhHHHH------HHhHHhhH---HHHHHHHHHHHHHHHHHhccHHHHHHhHHH
Q 025242 108 MRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNEL------NLSGELMK---KESKKLLERAALAEKEMIRGETELKNAGNQ 178 (255)
Q Consensus 108 LrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eL------r~svdllk---~Es~KL~eRaalAEeEm~RGrtkLr~aG~Q 178 (255)
|+.|.+-..++++-.. ..|++=++.| ...++.++ +|.+++.+....+..+...-. .
T Consensus 152 lk~~g~~~~y~~~~~~-------~~a~~i~~~l~~~~~~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~ 216 (276)
T PF12889_consen 152 LKKEGKMIIYYMLKLM-------IDAEQIIDELQSDDNQKFDMAALDAALAELEKLLKDLKKLTKENYDDE--------M 216 (276)
T ss_dssp TTTTTHHHHHHHHHHH-------HHHHHHHHHHT-TTS--HHHHHHH--HHHHHHHHHHHHTS---TT-H----------
T ss_pred HhhHHHHHHHHHHHHH-------HHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHhhcccccch--------h
Confidence 7778888888888655 4444444444 13333444 333344333333333322111 2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcc---ceeEEEecceecccchhhhhccC
Q 025242 179 VQRLAKQVYKVETQAAGIVGCIFF---SSIMIVVGKTVVGNLSDMVDNFN 225 (255)
Q Consensus 179 Iq~L~~svYKiE~~AagL~D~LR~---~~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
+....+++-..-..+..++.++|+ .---..+|+++.|...+|+.+||
T Consensus 217 ~~~~~~~~~~~~~~~~~~i~~vr~~~~~~~~~~~~~~~~~~~~~l~~~yn 266 (276)
T PF12889_consen 217 LSSFMSSADSFKSSAKSFIRRVRDLQQSESNWMSGEPTEGSPEKLLKSYN 266 (276)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHH-------------HCTTSS--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCCCCHHHHHHHHH
Confidence 222233333333344444444444 22234567778888888888776
No 59
>PF15456 Uds1: Up-regulated During Septation
Probab=42.64 E-value=83 Score=26.29 Aligned_cols=39 Identities=26% Similarity=0.382 Sum_probs=27.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Q 025242 143 SGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (255)
Q Consensus 143 svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L 182 (255)
.||.+|+|.+.|..|.-..-.-+. =.+|+|+|+..|.++
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 477788888888877776666665 567777777666665
No 60
>PRK14150 heat shock protein GrpE; Provisional
Probab=42.41 E-value=26 Score=31.05 Aligned_cols=72 Identities=13% Similarity=0.197 Sum_probs=31.2
Q ss_pred HHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccceeEEEecceecccchhhhhccCcccceeeee
Q 025242 163 KEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTI 234 (255)
Q Consensus 163 eEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (255)
..++|=.++.-|..+..++-... .|.+++-+..|++.+-...-.+-..+.--..+..++..+.|-.+.|+.+
T Consensus 59 d~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~ 132 (193)
T PRK14150 59 DSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLKSLLDT 132 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443332 3556666666665544332222111211122344444455544444443
No 61
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=42.40 E-value=2.3e+02 Score=24.75 Aligned_cols=63 Identities=22% Similarity=0.303 Sum_probs=42.7
Q ss_pred chHHHHH---HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHH----HHHHHHHH
Q 025242 125 SEEAMFV---RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQV----QRLAKQVY 187 (255)
Q Consensus 125 SEEaLl~---~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QI----q~L~~svY 187 (255)
|.+.+|. .|.++++.++..++.++.+....-+..-.-|...++-|.+|+..-+.+ ..-++.+|
T Consensus 14 sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AY 83 (159)
T PF05384_consen 14 SKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAY 83 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHH
Confidence 4444544 455677778888888888887777777777777777777777766666 34455555
No 62
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=42.21 E-value=4.3 Score=38.47 Aligned_cols=74 Identities=19% Similarity=0.255 Sum_probs=41.9
Q ss_pred HHHhccHHHHHHhHHHHHHHHHHHHH----HHHhhhhhhhhhccceeEEE----ecceecccchhhhhccCcccceeeee
Q 025242 163 KEMIRGETELKNAGNQVQRLAKQVYK----VETQAAGIVGCIFFSSIMIV----VGKTVVGNLSDMVDNFNMQDKIFLTI 234 (255)
Q Consensus 163 eEm~RGrtkLr~aG~QIq~L~~svYK----iE~~AagL~D~LR~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (255)
+|.+||. +|++ +.|++..++.-++ +--.-..|...+....++|+ -|||++ +..++.+..... -.+
T Consensus 1 ~~~~rg~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~g~tGsGKt~~--i~~l~~~~~~~~---~~~ 73 (410)
T cd01127 1 KEHLRGS-RLVD-VRKLARKLRKKDGKASPITIAGLPFPKDAEEAHTMIIGTTGTGKTTQ--IRELLASIRARG---DRA 73 (410)
T ss_pred CcccCcc-eecC-HHHHHHHHHHhcCCCCCeeECCEeCCcchhhccEEEEcCCCCCHHHH--HHHHHHHHHhcC---CCE
Confidence 3678887 7877 5666666664222 11111234556666777665 356654 444554422111 257
Q ss_pred eeecCCCCc
Q 025242 235 LICDRKGSS 243 (255)
Q Consensus 235 ~~~~~~~~~ 243 (255)
+|.|.||.-
T Consensus 74 vi~D~kg~~ 82 (410)
T cd01127 74 IIYDPNGGF 82 (410)
T ss_pred EEEeCCcch
Confidence 899999973
No 63
>PRK14143 heat shock protein GrpE; Provisional
Probab=41.73 E-value=33 Score=31.58 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=10.4
Q ss_pred HHHHHHhHHhhHHHHHHHHHHH
Q 025242 137 VNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 137 V~eLr~svdllk~Es~KL~eRa 158 (255)
+.+|+..++.+++|.+.|.++.
T Consensus 69 ~~~l~~el~~l~~e~~elkd~~ 90 (238)
T PRK14143 69 LAQLEQELESLKQELEELNSQY 90 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555444443
No 64
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=41.73 E-value=1.2e+02 Score=29.22 Aligned_cols=71 Identities=15% Similarity=0.271 Sum_probs=49.8
Q ss_pred hcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 025242 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAG 195 (255)
Q Consensus 121 GRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~Aag 195 (255)
..|.+|+.| +..+.-+..++..+..+.+|+..+.+.-+.+- .+|+..|.++-..|+.|...+-.|-.+|..
T Consensus 12 ~lfp~e~SL-~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~---~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~ 82 (383)
T PF04100_consen 12 ELFPDEQSL-SNLDELIAKLRKEIRELDEEIKELVREQSSSG---QDAEEDLEEAQEAIQELFEKISEIKSKAEE 82 (383)
T ss_pred HhCCChHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888775 66777788888777777777776654433221 457777888888888888888777666653
No 65
>PRK14139 heat shock protein GrpE; Provisional
Probab=41.42 E-value=27 Score=30.98 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=10.3
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHH
Q 025242 135 KNVNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 135 ~~V~eLr~svdllk~Es~KL~eRa 158 (255)
..+..|...++.+++|...|.++.
T Consensus 32 ~e~~~l~~~l~~le~e~~elkd~~ 55 (185)
T PRK14139 32 DAAPALEAELAEAEAKAAELQDSF 55 (185)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 66
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.76 E-value=1.6e+02 Score=31.47 Aligned_cols=73 Identities=21% Similarity=0.182 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFF 202 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~ 202 (255)
|.-+..|..+|..|+..++.++.+...+.++ ++.+..+-++.+-+-..++.++.++.-.-..+...|..+|+.
T Consensus 358 e~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~---~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~ 430 (717)
T PF09730_consen 358 ECKYKVAVSEVIQLKAELKALKSKYNELEER---YKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRA 430 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4555666666666666666666555555552 223333334444444444444444333223333344444433
No 67
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=40.27 E-value=67 Score=33.76 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=45.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHH-----------HHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHh
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERA-----------ALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 192 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRa-----------alAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~ 192 (255)
+.+...+++.|+.+++.+|+-.++....+ .+.+.++.+=+.-|++-|.+|..+++.+=.|.++
T Consensus 641 L~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667788888888888777754332 3344556666778999999999999998887765
No 68
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=39.57 E-value=2.2e+02 Score=29.85 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=56.1
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHH--------------HHHHHHHHHHHHHhhhhhh
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQ--------------VQRLAKQVYKVETQAAGIV 197 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~Q--------------Iq~L~~svYKiE~~AagL~ 197 (255)
.++++|++||..|..+.++++.++.-.+..|.+++|=+.+++++.+. -+.+...+-++..+-..+-
T Consensus 83 ~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q 162 (632)
T PF14817_consen 83 ELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQ 162 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888777777665432 2233333445666666666
Q ss_pred hhhccceeEEEeccee
Q 025242 198 GCIFFSSIMIVVGKTV 213 (255)
Q Consensus 198 D~LR~~~~~~~~~~~~ 213 (255)
|.-|...+-++.|.+.
T Consensus 163 ~~~R~a~~~v~~~~~~ 178 (632)
T PF14817_consen 163 DIQRKAKVEVEFGPST 178 (632)
T ss_pred HHHhhccCceeecCCc
Confidence 6666655556666655
No 69
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=39.36 E-value=2e+02 Score=30.50 Aligned_cols=25 Identities=28% Similarity=0.219 Sum_probs=10.2
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 141 NLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 141 r~svdllk~Es~KL~eRaalAEeEm 165 (255)
+..++.++.|.+++.++....++++
T Consensus 531 ~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333333
No 70
>PRK10698 phage shock protein PspA; Provisional
Probab=39.31 E-value=2.5e+02 Score=25.17 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr 173 (255)
-+.++-+.-+.+...++.+..+..++.++|.+| +..|+-.|-
T Consensus 46 alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~A---l~~G~EdLA 87 (222)
T PRK10698 46 TSARALAEKKQLTRRIEQAEAQQVEWQEKAELA---LRKEKEDLA 87 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHH
Confidence 344555556667777777777777777776655 445555443
No 71
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=39.16 E-value=95 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~e 156 (255)
.-+...+++..++++.-+.++.|.++|.+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444445555555555555555555543
No 72
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=39.05 E-value=3.1e+02 Score=25.08 Aligned_cols=149 Identities=13% Similarity=0.140 Sum_probs=80.5
Q ss_pred chHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHh
Q 025242 25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAG 104 (255)
Q Consensus 25 ~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~ag 104 (255)
-.|.++|++-+.|=..-=.+-|+.|+.-+.-++-.... -+.-.++| +.|.+|..-+.+...+|..|-.++-.+..-+.
T Consensus 18 i~~~~~i~~f~kERa~IEkeYakkL~~L~kKy~~kk~~-~~~~~~~~-t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~ 95 (253)
T cd07676 18 IEVLEKYIKFVKERTEIELSYAKQLRNLSKKYQPKKNS-KEEEEYKY-TSCRAFLMTLNEMNDYAGQHEVISENLASQII 95 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777765443344455577666555444310 01123467 77888888888888899999887765543222
Q ss_pred H-----h-hcccchhHHHHHhhhcccch-HH---HHHHHHHh-------HHHHHHh-------HHhhHHHHHHHHHHHHH
Q 025242 105 L-----L-FMRGPRRFLFRHTFGRLRSE-EA---MFVRAEKN-------VNELNLS-------GELMKKESKKLLERAAL 160 (255)
Q Consensus 105 l-----L-lLrgPRRfLyr~TlGRFqSE-Ea---Ll~~Ae~~-------V~eLr~s-------vdllk~Es~KL~eRaal 160 (255)
- + -++.-|.-+|..- ...+.+ +. -+..|-++ ++..++. .+.-+.+.+|+..++..
T Consensus 96 ~~l~~~~~~~k~~rK~~~~~~-~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~ 174 (253)
T cd07676 96 VELTRYVQELKQERKSHFHDG-RKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQI 174 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH
Confidence 2 1 2577777777653 222111 11 11112222 2222221 12244566677777777
Q ss_pred HHHHHhccHHHHHHhH
Q 025242 161 AEKEMIRGETELKNAG 176 (255)
Q Consensus 161 AEeEm~RGrtkLr~aG 176 (255)
.+.++.....+-...=
T Consensus 175 ~~~~~e~aKn~Y~~~l 190 (253)
T cd07676 175 RHQMAEDSKAEYSSYL 190 (253)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777776665544433
No 73
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=39.01 E-value=2.2e+02 Score=23.48 Aligned_cols=100 Identities=12% Similarity=0.137 Sum_probs=58.9
Q ss_pred HHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHH-HHHHHhcc--------HHHH
Q 025242 102 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAAL-AEKEMIRG--------ETEL 172 (255)
Q Consensus 102 ~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaal-AEeEm~RG--------rtkL 172 (255)
+..++++---++|||.-..+-+..=+..+...-...++++..++.+++|.+..+..+.. |+...... ...+
T Consensus 15 i~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~ 94 (141)
T PRK08476 15 VVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKI 94 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445567899999988888777778777777777887777777777766533321 22211111 1223
Q ss_pred HHhHHHHHHHHHHH-HHHHHhhhhhhhhhc
Q 025242 173 KNAGNQVQRLAKQV-YKVETQAAGIVGCIF 201 (255)
Q Consensus 173 r~aG~QIq~L~~sv-YKiE~~AagL~D~LR 201 (255)
.+|..++.+....+ -.++.+...++..|+
T Consensus 95 ~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~ 124 (141)
T PRK08476 95 EAKKAELESKYEAFAKQLANQKQELKEQLL 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443333 346666666666665
No 74
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.84 E-value=3.3e+02 Score=25.48 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=72.8
Q ss_pred chHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHh
Q 025242 25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAG 104 (255)
Q Consensus 25 ~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~ag 104 (255)
-.|++++++-+.+=...=-+-|+.++.-+..++-+-..--+.-...|. +-..|+.-+.+....|..|-.++.-+.....
T Consensus 18 ~~~le~~~~f~k~R~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~-~~~s~~~~~~e~~~~a~Q~~~~~~~~~~~~~ 96 (263)
T cd07678 18 AELLEDIRSYSKQRAAIEREYGQALQRLASQFLKRDWHRGGNETEMDR-SVRTVWGAWREGTAATGQGRVTRLEAYRRLR 96 (263)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCchhhhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 468888887777765555566666666665555444110000011222 4456677778888888888666654432222
Q ss_pred Hhhc---ccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 105 LLFM---RGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 105 lLlL---rgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
-.+. |--+..+.+..+.-.+-=..=+..+-+++...+.+-..+..|+..-.+.+.-||..+
T Consensus 97 ~e~~~~~r~~ke~~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~k~ 160 (263)
T cd07678 97 DEAGKTGRSAKEQVLKKSTEQLQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARL 160 (263)
T ss_pred hhHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2111 111112444433222222222333445556666666666667766677776666544
No 75
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=38.67 E-value=2.1e+02 Score=25.58 Aligned_cols=26 Identities=23% Similarity=0.176 Sum_probs=12.1
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHhcc
Q 025242 143 SGELMKKESKKLLERAALAEKEMIRG 168 (255)
Q Consensus 143 svdllk~Es~KL~eRaalAEeEm~RG 168 (255)
.++..+++.+....+...|+.++.|=
T Consensus 109 ~i~~~~~~~~~a~~~l~~a~~~~~r~ 134 (334)
T TIGR00998 109 KVESLKIKLEQAREKLLQAELDLRRR 134 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33334444444444445555555553
No 76
>PRK14151 heat shock protein GrpE; Provisional
Probab=38.56 E-value=30 Score=30.31 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=4.4
Q ss_pred eeeeecCCCC
Q 025242 233 TILICDRKGS 242 (255)
Q Consensus 233 ~~~~~~~~~~ 242 (255)
||+-+=++|-
T Consensus 150 tI~~v~qkGY 159 (176)
T PRK14151 150 SVLKVFQKGY 159 (176)
T ss_pred eEEEEeeCCc
Confidence 4444444443
No 77
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=38.50 E-value=2.6e+02 Score=24.07 Aligned_cols=50 Identities=12% Similarity=-0.007 Sum_probs=29.3
Q ss_pred hHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHH
Q 025242 104 GLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKK 153 (255)
Q Consensus 104 glLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~K 153 (255)
.++|+--..+|+|....+-+..=+..+..--.+.++++..++.+..|.++
T Consensus 41 F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~ 90 (181)
T PRK13454 41 LVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNK 90 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445889999888877666666555555555554444444444433
No 78
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=38.48 E-value=2.4e+02 Score=23.76 Aligned_cols=57 Identities=18% Similarity=0.189 Sum_probs=38.0
Q ss_pred HHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025242 99 VALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 155 (255)
Q Consensus 99 ~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~ 155 (255)
..+...++++--=++|+|.-..+-+..=+..+...-.+.++.+..++.+..|.++.+
T Consensus 21 ~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l 77 (173)
T PRK13460 21 WTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARL 77 (173)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666788999888887777777777666666666666666655555543
No 79
>PRK14158 heat shock protein GrpE; Provisional
Probab=38.37 E-value=36 Score=30.48 Aligned_cols=88 Identities=16% Similarity=0.182 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccceeEEEecceecccchhhhhc
Q 025242 146 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDN 223 (255)
Q Consensus 146 llk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~~~~~~~~~~~~~~~~~~~~~ 223 (255)
.++.+..+|++.+...++.++|=.++.-|..+-.++-... -|.+++-+..|++.+-...-.+-... -.++.++++-
T Consensus 44 ~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~--~~~~~~i~~G 121 (194)
T PRK14158 44 ELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMERALDHAD--EESMSAIIEG 121 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhccC--cchHHHHHHH
Confidence 3333444444444444444455555555554444444333 35566667666655433322111111 1234556666
Q ss_pred cCcccceeeeee
Q 025242 224 FNMQDKIFLTIL 235 (255)
Q Consensus 224 ~~~~~~~~~~~~ 235 (255)
+.|-.+.|+.+|
T Consensus 122 v~mi~k~l~~vL 133 (194)
T PRK14158 122 IRMTLSMLLSTL 133 (194)
T ss_pred HHHHHHHHHHHH
Confidence 666665555443
No 80
>PRK14153 heat shock protein GrpE; Provisional
Probab=38.19 E-value=33 Score=30.70 Aligned_cols=91 Identities=14% Similarity=0.221 Sum_probs=41.1
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccceeEEEecce
Q 025242 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFSSIMIVVGKT 212 (255)
Q Consensus 135 ~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~~~~~~~~~~ 212 (255)
.+++.+...++.++.|...| ++.++|-.++..+..+..++-... -|.+++-+..|++.+-...-.+-..+.
T Consensus 33 ~~~~~~~~ei~~l~~e~~el-------kd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnLerAl~~~~~ 105 (194)
T PRK14153 33 PEDSTADSETEKCREEIESL-------KEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLEVTDNFERALESART 105 (194)
T ss_pred hhcccchHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc
Confidence 33444444444444444444 444455555544444444433332 355666666666655444333322221
Q ss_pred ecccchhhhhccCcccceeee
Q 025242 213 VVGNLSDMVDNFNMQDKIFLT 233 (255)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~ 233 (255)
-.++..++..|.|-.+-|+.
T Consensus 106 -~~~~~~l~~Gvemi~k~~~~ 125 (194)
T PRK14153 106 -AEDMNSIVEGIEMVSKQFFS 125 (194)
T ss_pred -cchHHHHHHHHHHHHHHHHH
Confidence 12234444555554444443
No 81
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=38.19 E-value=2.7e+02 Score=24.26 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=26.5
Q ss_pred hhHHHHHHHhHhhcccchhHHHHHhhhcccch-HHHHHHHHHhHHHHHHhH
Q 025242 95 AATGVALTAGLLFMRGPRRFLFRHTFGRLRSE-EAMFVRAEKNVNELNLSG 144 (255)
Q Consensus 95 ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSE-EaLl~~Ae~~V~eLr~sv 144 (255)
+++.+++++|+++ +++.++..+..-..+ +.++..|+++.+.++...
T Consensus 8 ~~~~vG~~~G~~~----~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~ 54 (201)
T PF12072_consen 8 VALIVGIGIGYLV----RKKINRKKLEQAEKEAEQILEEAEREAEAIKKEA 54 (201)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666 667777776654333 455666666655544433
No 82
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.90 E-value=3.6e+02 Score=25.60 Aligned_cols=91 Identities=9% Similarity=0.138 Sum_probs=73.0
Q ss_pred cchhHHHHHhhhc-ccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Q 025242 110 GPRRFLFRHTFGR-LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 110 gPRRfLyr~TlGR-FqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYK 188 (255)
.|+.-+|-.++.- .+.-+.-++..+.++..+...++.+-+...++.....-..+++-+=..+++..-++|.-+-..|
T Consensus 19 ~~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I-- 96 (265)
T COG3883 19 AFLTTVFAALLSDKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI-- 96 (265)
T ss_pred hhcchhhhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5777788888887 8888888888888888888888888888888888888888888888888888888887766554
Q ss_pred HHHhhhhhhhhhccc
Q 025242 189 VETQAAGIVGCIFFS 203 (255)
Q Consensus 189 iE~~AagL~D~LR~~ 203 (255)
..+=.-|.+++|.|
T Consensus 97 -~~r~~~l~~raRAm 110 (265)
T COG3883 97 -VERQELLKKRARAM 110 (265)
T ss_pred -HHHHHHHHHHHHHH
Confidence 33445677777765
No 83
>PF11727 ISG65-75: Invariant surface glycoprotein; InterPro: IPR021057 This family is found in Trypanosome species, and appears to be one of two invariant surface glycoproteins, ISG65 and ISG75, that are found in the mammalian stage of the parasitic protozoan. The sequence suggests the two families are polypeptides with N-terminal signal sequences, hydrophilic extracellular domains, single trans-membrane alpha-helices and short cytoplasmic domains. They are both expressed in the bloodstream form but not in the midgut stage. Both polypeptides are distributed over the entire surface of the parasite [, ].
Probab=37.42 E-value=3.1e+02 Score=25.19 Aligned_cols=89 Identities=20% Similarity=0.236 Sum_probs=52.4
Q ss_pred HHHHHhhhcccchHHHHHHHHHhHHHHH--HhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 114 FLFRHTFGRLRSEEAMFVRAEKNVNELN--LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 114 fLyr~TlGRFqSEEaLl~~Ae~~V~eLr--~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
+|.+.|-+-+..=+..+...+..++.|+ ....+-..+.+|+.+...-|+........+.+.++..++.....+-+.=+
T Consensus 59 ~l~~~~~~~~~~i~~~~~~v~~~~~~l~~~~~~~l~~~~~~kl~~~~~~a~~~~~~~~~~a~~~~~~~~~~~~~ak~aa~ 138 (286)
T PF11727_consen 59 YLVKETEDFLGDIKLHKEQVDHRVERLRSLEKGKLTDSDVKKLKEICEEAKKKNTEQLEEAKKAMEEAEETHEEAKEAAA 138 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555544333344444444444333 12223336677777888888888888888877777777776666655544
Q ss_pred hh------------hhhhhhhcc
Q 025242 192 QA------------AGIVGCIFF 202 (255)
Q Consensus 192 ~A------------agL~D~LR~ 202 (255)
.| +||.+.|.-
T Consensus 139 ~A~g~~~~~~~~~s~gL~~VL~~ 161 (286)
T PF11727_consen 139 KALGEALEGDCSNSTGLSQVLQW 161 (286)
T ss_pred HhhcccccCCCcchHHHHHHHHH
Confidence 44 566666654
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=37.34 E-value=2.5e+02 Score=23.61 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHH---HHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccce
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGET---ELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSS 204 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrt---kLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~~ 204 (255)
....+..+..|...+..+-.|..++.+++..+...+--+.. ..-+..+-|+-|-..+=..|.........||..+
T Consensus 30 ~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d 107 (143)
T PF12718_consen 30 NEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREAD 107 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555566666666666665555555544444432 2223455556666666666666666666666543
No 85
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.94 E-value=2.3e+02 Score=23.07 Aligned_cols=67 Identities=9% Similarity=0.138 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGI 196 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL 196 (255)
+.+.......+...+..++.++++..+.+..|+..|-|--.+=..+.+.|+.+=...-........|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 12 LQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINEL 78 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888889999999999999999887766554444444444444444444333333
No 86
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=36.79 E-value=2.2e+02 Score=22.75 Aligned_cols=58 Identities=9% Similarity=0.039 Sum_probs=35.7
Q ss_pred HHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025242 98 GVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 155 (255)
Q Consensus 98 g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~ 155 (255)
+.-++..++++--=++|||.-..+-+..=+..+...-.+.++++..++.+..|.++.+
T Consensus 9 ~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L 66 (140)
T PRK07353 9 PLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQL 66 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555578888887777766666666666666666666665555555443
No 87
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=36.44 E-value=2.1e+02 Score=26.50 Aligned_cols=86 Identities=13% Similarity=0.122 Sum_probs=57.1
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccceeEEEecceecccchh
Q 025242 140 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSD 219 (255)
Q Consensus 140 Lr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~~~~~~~~~~~~~~~~~ 219 (255)
|.+-.+-++..++++.++....+++......+|++.=++|+..-..+-.+-..+..|-+.|+....-=-.|-.. |.+
T Consensus 4 l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~---Le~ 80 (304)
T PF02646_consen 4 LEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQ---LER 80 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHH---HHH
Confidence 33344455566677778888888888888888888777777777777888888999999998665433333332 233
Q ss_pred hhhccCccc
Q 025242 220 MVDNFNMQD 228 (255)
Q Consensus 220 ~~~~~~~~~ 228 (255)
++.+..|+.
T Consensus 81 iLe~~gl~~ 89 (304)
T PF02646_consen 81 ILEDSGLPE 89 (304)
T ss_pred HHHHcCCCc
Confidence 344444443
No 88
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=36.15 E-value=2.7e+02 Score=23.60 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=36.4
Q ss_pred hhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 025242 94 AAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 152 (255)
Q Consensus 94 ~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~ 152 (255)
..+....+...++++--=++|+|+-..+-+..=+..+...-.+.++.+..++.+..|.+
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e 76 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENK 76 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666667789999888887776666665555555554444444444443
No 89
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=36.02 E-value=2.7e+02 Score=23.66 Aligned_cols=51 Identities=8% Similarity=-0.087 Sum_probs=26.5
Q ss_pred HHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHH
Q 025242 102 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESK 152 (255)
Q Consensus 102 ~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~ 152 (255)
...++++--=++|||.-..+.+..=+.-+...-...++.+..++.+..|.+
T Consensus 32 Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e 82 (184)
T CHL00019 32 INLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKAR 82 (184)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555578888877766655444444444444444444443333333
No 90
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=35.65 E-value=1.6e+02 Score=29.59 Aligned_cols=76 Identities=16% Similarity=0.107 Sum_probs=49.1
Q ss_pred HHHHHHHHHhHHHHHHh-----HHhhHHHHHHHHHHHHHHHHHHhcc--HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Q 025242 127 EAMFVRAEKNVNELNLS-----GELMKKESKKLLERAALAEKEMIRG--ETELKNAGNQVQRLAKQVYKVETQAAGIVGC 199 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~s-----vdllk~Es~KL~eRaalAEeEm~RG--rtkLr~aG~QIq~L~~svYKiE~~AagL~D~ 199 (255)
++|+..+|+-||+|.+. +.-...|.++.++|+..|-..|..= +..+-.-.++......-+.++|.+-+.+.-.
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999764 4455666666666666666655422 2223344566667777777777776666555
Q ss_pred hcc
Q 025242 200 IFF 202 (255)
Q Consensus 200 LR~ 202 (255)
|..
T Consensus 302 L~~ 304 (434)
T PRK15178 302 YAQ 304 (434)
T ss_pred HHH
Confidence 543
No 91
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=35.21 E-value=1.3e+02 Score=28.68 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=39.0
Q ss_pred HHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHh
Q 025242 117 RHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNA 175 (255)
Q Consensus 117 r~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~a 175 (255)
++.+-+||+.+++.. ..+|+..-.+.+++|+++|.+.+.-|.+++++=+.+....
T Consensus 188 ~~~~~~~~~~~~~~~----~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 188 RNDIDKFQEREDEKI----LHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred hchhhhhhhhhhHHH----HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 334567877766643 3444555566688999999999999999998877665543
No 92
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=35.15 E-value=2.4e+02 Score=22.82 Aligned_cols=100 Identities=14% Similarity=0.141 Sum_probs=47.4
Q ss_pred HHHhHhhcccchhHHHHHhhhcccchHHHHHH-----------HHHhHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHhcc
Q 025242 101 LTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVR-----------AEKNVNELNLSGELMKKESKKLLERA-ALAEKEMIRG 168 (255)
Q Consensus 101 ~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~-----------Ae~~V~eLr~svdllk~Es~KL~eRa-alAEeEm~RG 168 (255)
++..++++--=.+|+|.-...-+..=+..+.. |+...++++..++..+.|.+.+.+.+ ..|+.+...-
T Consensus 11 ~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~ 90 (156)
T PRK05759 11 LIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAAQIIEEA 90 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444446778887777666554444444 44444444555555555555443332 2344444443
Q ss_pred HHHHHHhHHHHHHHHHHHH-HHHHhhhhhhhhhccc
Q 025242 169 ETELKNAGNQVQRLAKQVY-KVETQAAGIVGCIFFS 203 (255)
Q Consensus 169 rtkLr~aG~QIq~L~~svY-KiE~~AagL~D~LR~~ 203 (255)
..+.+. ++++++..+. .++.+-...++.|+..
T Consensus 91 ~~~a~~---ea~~~~~~a~~~i~~e~~~a~~~l~~~ 123 (156)
T PRK05759 91 KAEAEA---EAARIKAQAQAEIEQERKRAREELRKQ 123 (156)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3333333332 2444444445555543
No 93
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=34.90 E-value=2.4e+02 Score=31.63 Aligned_cols=59 Identities=29% Similarity=0.273 Sum_probs=38.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHH-hccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 143 SGELMKKESKKLLERAALAEKEM-IRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 143 svdllk~Es~KL~eRaalAEeEm-~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
+++..|.+...+.+..+.++++. +.+-.++-+....+..|.+.+=|+|.+-..|.+.+.
T Consensus 366 ~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~ 425 (1074)
T KOG0250|consen 366 SIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELN 425 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555566665 777777777777888888888888877777665544
No 94
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=34.82 E-value=2.1e+02 Score=22.07 Aligned_cols=94 Identities=19% Similarity=0.183 Sum_probs=52.0
Q ss_pred chhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHH------------HHHHHHHhccHHHHHHhHHH
Q 025242 111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERA------------ALAEKEMIRGETELKNAGNQ 178 (255)
Q Consensus 111 PRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRa------------alAEeEm~RGrtkLr~aG~Q 178 (255)
=-+|+|....+-|..=++.+.+...++++++..++.+..|.++.+..+ ..||++... .+.++-++
T Consensus 16 l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~---~~~ea~~~ 92 (132)
T PF00430_consen 16 LNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEE---ILAEAEKE 92 (132)
T ss_dssp HHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 356788877777777677777776666666666666666655543222 233444333 33444444
Q ss_pred HHHHHH-HHHHHHHhhhhhhhhhccceeEE
Q 025242 179 VQRLAK-QVYKVETQAAGIVGCIFFSSIMI 207 (255)
Q Consensus 179 Iq~L~~-svYKiE~~AagL~D~LR~~~~~~ 207 (255)
+.+... ...+++.+...++..|+....-+
T Consensus 93 ~~~~~~~a~~~i~~e~~~a~~~l~~~~~~l 122 (132)
T PF00430_consen 93 AERIIEQAEAEIEQEKEKAKKELRQEIVDL 122 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443 34678888888888888775443
No 95
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=34.42 E-value=68 Score=26.31 Aligned_cols=31 Identities=29% Similarity=0.393 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Q 025242 155 LERAALAEKEMIRGETELKNAGNQVQRLAKQ 185 (255)
Q Consensus 155 ~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s 185 (255)
-+|...|...+++-.-.|+.+|.+|++.|..
T Consensus 66 NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 66 NERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677778888888888999999999988764
No 96
>PRK14156 heat shock protein GrpE; Provisional
Probab=34.31 E-value=35 Score=30.13 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccceeEEEecceecccchhhhhccCcc
Q 025242 150 ESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQ 227 (255)
Q Consensus 150 Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (255)
++++|++.+..-...+.|=.++.-|..+-.++-... -|..++-+..|++.+-...-.+-.+ +...++++.+.|-
T Consensus 35 ~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~----~~~~~l~~Gv~mi 110 (177)
T PRK14156 35 ELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAILPSLDNLERALAVE----GLTDDVKKGLEMV 110 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhCc----ccchhHHHHHHHH
Confidence 334444444444455555555555555555554444 5667777777766554433222111 2223456666666
Q ss_pred cceeeeee
Q 025242 228 DKIFLTIL 235 (255)
Q Consensus 228 ~~~~~~~~ 235 (255)
.+-|+.+|
T Consensus 111 ~k~l~~~L 118 (177)
T PRK14156 111 QESLIQAL 118 (177)
T ss_pred HHHHHHHH
Confidence 66666555
No 97
>PHA02562 46 endonuclease subunit; Provisional
Probab=34.07 E-value=3.7e+02 Score=25.96 Aligned_cols=14 Identities=7% Similarity=0.259 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 025242 178 QVQRLAKQVYKVET 191 (255)
Q Consensus 178 QIq~L~~svYKiE~ 191 (255)
+|..+-...-.+++
T Consensus 387 ~l~~~~~~~~~~~k 400 (562)
T PHA02562 387 ELDKIVKTKSELVK 400 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 98
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=33.98 E-value=3.7e+02 Score=24.49 Aligned_cols=60 Identities=10% Similarity=0.235 Sum_probs=33.0
Q ss_pred hHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHH-----------HHHHhHHHHHHhHHhhHHHHHHHH
Q 025242 96 ATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFV-----------RAEKNVNELNLSGELMKKESKKLL 155 (255)
Q Consensus 96 a~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~-----------~Ae~~V~eLr~svdllk~Es~KL~ 155 (255)
+...-+...++++--=++|||+-...-+.-=+.-+. .|++..+++++.+...+.|.+.+.
T Consensus 7 t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii 77 (250)
T PRK14474 7 TVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFM 77 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555666689999987776654433333 333344445555555555555544
No 99
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=33.34 E-value=4.1e+02 Score=27.66 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=6.6
Q ss_pred HHHhccHHHHHHhHHHHH
Q 025242 163 KEMIRGETELKNAGNQVQ 180 (255)
Q Consensus 163 eEm~RGrtkLr~aG~QIq 180 (255)
.++..=+.+|.+...++.
T Consensus 469 ~~l~~~~~~l~~l~~~l~ 486 (1164)
T TIGR02169 469 QELYDLKEEYDRVEKELS 486 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 100
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=33.30 E-value=2.6e+02 Score=28.65 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=23.3
Q ss_pred hhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHH
Q 025242 106 LFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGE 145 (255)
Q Consensus 106 LlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svd 145 (255)
..||.||-.|=+.+ +++. .....+++.+++.++..+
T Consensus 146 ~~lp~~~eil~~~~---L~T~-~~~~~~~~~~k~~~~~w~ 181 (555)
T TIGR03545 146 SQLPDPRALLKGED---LKTV-ETAEEIEKSLKAMQQKWK 181 (555)
T ss_pred ccCCCHHHHhccCC---CCcH-HHHHHHHHHHHHHHHHHH
Confidence 57889999988776 6666 445555555555544444
No 101
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=33.16 E-value=3.6e+02 Score=24.13 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=24.1
Q ss_pred cccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025242 122 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 122 RFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRa 158 (255)
-+...-.|+..|.++|++|...+...+.+.++..+.+
T Consensus 138 el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~aA 174 (188)
T PF05335_consen 138 ELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKAA 174 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777776665443
No 102
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=33.09 E-value=3.5e+02 Score=24.04 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=8.9
Q ss_pred hHHhhHHHHHHHHHHHHHHHHH
Q 025242 143 SGELMKKESKKLLERAALAEKE 164 (255)
Q Consensus 143 svdllk~Es~KL~eRaalAEeE 164 (255)
.++....|.+.|+++....+.|
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e 64 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLERE 64 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 103
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=32.61 E-value=1.9e+02 Score=28.53 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=37.8
Q ss_pred HhHHHHHHhHHhhHHHHHHHH-----HHHHHHHHHHhcc--------HHHHHHhHHHHHHHHHHHHHHH
Q 025242 135 KNVNELNLSGELMKKESKKLL-----ERAALAEKEMIRG--------ETELKNAGNQVQRLAKQVYKVE 190 (255)
Q Consensus 135 ~~V~eLr~svdllk~Es~KL~-----eRaalAEeEm~RG--------rtkLr~aG~QIq~L~~svYKiE 190 (255)
++-+||+.++-.+..|+.||. ++|..|=+-.+.| ...|+.+|..+...+..+.+.|
T Consensus 8 ~kskE~~enik~l~~~~~~~~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~~s~ 76 (378)
T TIGR00984 8 QKSQELQESIKQLQDRSGKLNESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAWESE 76 (378)
T ss_pred HhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcH
Confidence 578999999999999999996 3444444444445 3456666666666666555444
No 104
>PRK14140 heat shock protein GrpE; Provisional
Probab=32.08 E-value=47 Score=29.69 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=6.9
Q ss_pred HHHHHhhhhhhhhh
Q 025242 187 YKVETQAAGIVGCI 200 (255)
Q Consensus 187 YKiE~~AagL~D~L 200 (255)
|.+++-+..|++.+
T Consensus 84 ~a~~~~~~~LLpvl 97 (191)
T PRK14140 84 YRAQSLASDLLPAL 97 (191)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554444
No 105
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=32.05 E-value=2.8e+02 Score=25.65 Aligned_cols=21 Identities=5% Similarity=0.060 Sum_probs=8.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKE 150 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~E 150 (255)
+..++.++...+...++.+.+
T Consensus 108 l~~~~~~l~~a~~~l~~a~~~ 128 (370)
T PRK11578 108 LMELRAQRQQAEAELKLARVT 128 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 106
>PRK14162 heat shock protein GrpE; Provisional
Probab=31.99 E-value=46 Score=29.81 Aligned_cols=15 Identities=13% Similarity=0.301 Sum_probs=7.9
Q ss_pred HHHHHhhhhhhhhhc
Q 025242 187 YKVETQAAGIVGCIF 201 (255)
Q Consensus 187 YKiE~~AagL~D~LR 201 (255)
|.+++-+..|++.+-
T Consensus 86 ~a~~~~~~~LLpV~D 100 (194)
T PRK14162 86 YESQSLAKDVLPAMD 100 (194)
T ss_pred HHHHHHHHHHhhHHh
Confidence 445555555554443
No 107
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=31.48 E-value=1.6e+02 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=8.6
Q ss_pred HhHHHHHHhHHhhHHH
Q 025242 135 KNVNELNLSGELMKKE 150 (255)
Q Consensus 135 ~~V~eLr~svdllk~E 150 (255)
+.+|.|+..++-.|.|
T Consensus 33 q~~Kql~KA~NIAKse 48 (199)
T PF08717_consen 33 QELKQLKKAMNIAKSE 48 (199)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHH
Confidence 4455555555555555
No 108
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=31.33 E-value=3.2e+02 Score=23.02 Aligned_cols=47 Identities=6% Similarity=0.065 Sum_probs=25.7
Q ss_pred hHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHH
Q 025242 104 GLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKE 150 (255)
Q Consensus 104 glLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~E 150 (255)
.++++--=++|+|....+-+..=+..+...-.+.++.+..++.+..|
T Consensus 28 Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e 74 (175)
T PRK14472 28 FVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRK 74 (175)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444446788888887777655555544444444444444433333
No 109
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.99 E-value=3.7e+02 Score=30.21 Aligned_cols=144 Identities=19% Similarity=0.192 Sum_probs=81.3
Q ss_pred cccccchHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHH
Q 025242 20 RTKDAKEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGV 99 (255)
Q Consensus 20 ~~~~~~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~ 99 (255)
-+|++-+=+||.+| |++|+-.+-..=.=.++- -++.-|.+. +++|.-|..|++--++-+
T Consensus 373 ~lEETlSTLEYA~R------------AKnIkNKPevNQkl~K~~--llKd~~~EI-----erLK~dl~AaReKnGvyi-- 431 (1041)
T KOG0243|consen 373 NLEETLSTLEYAHR------------AKNIKNKPEVNQKLMKKT--LLKDLYEEI-----ERLKRDLAAAREKNGVYI-- 431 (1041)
T ss_pred cHHHHHHHHHHHHH------------hhhccCCCccchHHHHHH--HHHHHHHHH-----HHHHHHHHHhHhhCceEe--
Confidence 37888888888888 788877665441111111 123333333 467888877776543311
Q ss_pred HHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHH---------------------HHHHHHH
Q 025242 100 ALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKES---------------------KKLLERA 158 (255)
Q Consensus 100 a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es---------------------~KL~eRa 158 (255)
+- -||..||.-++.....+++|...++.+..+. ++|.+..
T Consensus 432 ---------se----------e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L 492 (1041)
T KOG0243|consen 432 ---------SE----------ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKL 492 (1041)
T ss_pred ---------ch----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11 1222444446666666666666665554444 4444555
Q ss_pred HHHHHHHhccHHHHHHhHHH-------HHHHHHHHHHHHHhhhhhhhhhccc
Q 025242 159 ALAEKEMIRGETELKNAGNQ-------VQRLAKQVYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 159 alAEeEm~RGrtkLr~aG~Q-------Iq~L~~svYKiE~~AagL~D~LR~~ 203 (255)
.--..||..=..++.++-.+ |+..-++--++..+|..|--.++.|
T Consensus 493 ~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s 544 (1041)
T KOG0243|consen 493 QNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEES 544 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666666666666666 5555566666666777766666554
No 110
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.89 E-value=1.1e+02 Score=21.75 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=11.4
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKL 154 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL 154 (255)
-+...+++.++++...+.++.|.++|
T Consensus 25 ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 25 EIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444
No 111
>PRK14145 heat shock protein GrpE; Provisional
Probab=30.79 E-value=51 Score=29.66 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=43.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccceeEEEecceecccchhhh
Q 025242 144 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFSSIMIVVGKTVVGNLSDMV 221 (255)
Q Consensus 144 vdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~~~~~~~~~~~~~~~~~~~ 221 (255)
++.++.+.+++.+.+.-....++|-.++.-+..+-.++-... -|.+++-+..|++.+-...-.+-. .+....++
T Consensus 47 ~~~l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~DnLerAl~~----~~~~~~l~ 122 (196)
T PRK14145 47 IEELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDNFERALAS----SGDYNSLK 122 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHhc----cccHHHHH
Confidence 344444555555555555555556566555555555544443 355666677766554333211111 12233455
Q ss_pred hccCcccceeeeee
Q 025242 222 DNFNMQDKIFLTIL 235 (255)
Q Consensus 222 ~~~~~~~~~~~~~~ 235 (255)
+.++|--+.|+.+|
T Consensus 123 ~Gv~mi~k~l~~vL 136 (196)
T PRK14145 123 EGIELIYRQFKKIL 136 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 112
>CHL00088 apcB allophycocyanin beta subunit
Probab=30.75 E-value=2e+02 Score=24.98 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=67.5
Q ss_pred hHhhHHHHHhhhh-hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHh---HHHHHHHHhhCchhhHHHHHHHhHhhcccc
Q 025242 36 IQSKDSAIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK---VKDELVSAREHPAAATGVALTAGLLFMRGP 111 (255)
Q Consensus 36 ~es~DsaI~sa~s-i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~k---IKegv~vA~ehP~ia~g~a~~aglLlLrgP 111 (255)
.+++-++|.+|-+ -|=-|+..+.++++|+..+.....++|-.-=+. |+++..-...+|.+..+..- ..+|
T Consensus 2 ~~~it~~i~~AD~~gRyls~~eL~~l~~~~~~~~~Rl~aa~~L~~na~~Iv~~A~~~~~~~p~~~~~Gg~------~y~~ 75 (161)
T CHL00088 2 QDAITSVINAADVQGKYLDDNSVEKLRSYFQTGELRVRAAATIAANAATIIKEAVAKSLLYSDITRPGGN------MYTT 75 (161)
T ss_pred CcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhCCCCcCCCCC------ccCh
Confidence 4566677777776 777889999999999999999998888432221 45555544458875443322 3456
Q ss_pred hhH----------HHHHhhhccc-----chHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025242 112 RRF----------LFRHTFGRLR-----SEEAMFVRAEKNVNELNLSGELMKKESKKLLER 157 (255)
Q Consensus 112 RRf----------Lyr~TlGRFq-----SEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eR 157 (255)
||. |=+-|-+..- -+|-.+++-..=++.|...+..+-.=++.+.+.
T Consensus 76 ~r~~~C~RD~~~~LR~itYaivaGd~~~L~e~~L~GlrE~y~~Lgvp~~~~i~al~~mk~~ 136 (161)
T CHL00088 76 RRYAACIRDLDYYLRYATYGMLAGDPSILDERVLNGLKETYNSLGVPIGATIQAIQAMKEV 136 (161)
T ss_pred HHHHHHHHHHhhhccceeeeeecCCchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 552 1111222221 144555555555555555555554444444433
No 113
>smart00435 TOPEUc DNA Topoisomerase I (eukaryota). DNA Topoisomerase I (eukaryota), DNA topoisomerase V, Vaccina virus topoisomerase, Variola virus topoisomerase, Shope fibroma virus topoisomeras
Probab=30.70 E-value=2.6e+02 Score=27.90 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=46.6
Q ss_pred HhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHH---HHHHHHHHH--------------hccHHHHHHhHHHHH
Q 025242 118 HTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLE---RAALAEKEM--------------IRGETELKNAGNQVQ 180 (255)
Q Consensus 118 ~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~e---RaalAEeEm--------------~RGrtkLr~aG~QIq 180 (255)
||..-=.+=++.+.+.+.+.++++..+..++.+..++.. --...+.-+ ...-...-...+||+
T Consensus 267 ntraV~k~~~~~m~k~~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 346 (391)
T smart00435 267 HQRTVSKTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIE 346 (391)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 333334455566666666666666666555555543331 001111112 122223334567999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcc
Q 025242 181 RLAKQVYKVETQAAGIVGCIFF 202 (255)
Q Consensus 181 ~L~~svYKiE~~AagL~D~LR~ 202 (255)
++-..+-|+|.|+.+ +|+.++
T Consensus 347 ~~~~~i~k~~~q~~~-ke~nk~ 367 (391)
T smart00435 347 RLEERIEKLEVQATD-KEENKT 367 (391)
T ss_pred HHHHHHHHHHHHHHh-hhcCee
Confidence 999999999999876 566554
No 114
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.29 E-value=2.7e+02 Score=21.85 Aligned_cols=70 Identities=14% Similarity=0.178 Sum_probs=50.0
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
|.+=..+..++.+|+..+..++..++.|.++- ++++.=-.+|-+--.|+..|...+|.++.-...|=..+
T Consensus 27 e~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~ 96 (99)
T PF10046_consen 27 ENMNKATSLKYKKMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESKF 96 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999998888765 34444445666666677777777777776666554443
No 115
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=30.15 E-value=3.7e+02 Score=23.36 Aligned_cols=75 Identities=9% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
+.-+......++.++..++..+++..++.+....-...+.+.........+++..+...+-+.+..-..+...+.
T Consensus 69 ~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~ 143 (302)
T PF10186_consen 69 RERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLA 143 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 116
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=29.73 E-value=3.1e+02 Score=22.40 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=31.4
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Q 025242 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQ 185 (255)
Q Consensus 133 Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~s 185 (255)
-+..++.|+..++.+..|..-++.+...++.++..=..+++..-.+++++-..
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566666556666666666666666666666666665543
No 117
>PRK08655 prephenate dehydrogenase; Provisional
Probab=29.47 E-value=5.4e+02 Score=25.05 Aligned_cols=105 Identities=17% Similarity=0.175 Sum_probs=65.4
Q ss_pred hhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH-----HHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 025242 120 FGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAA-----LAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAA 194 (255)
Q Consensus 120 lGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaa-----lAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~Aa 194 (255)
-|..-+--.|.......=..+.+.++.+..+.+++.+... .-++.|++++..+..+-..+.+-=+-++.+-..-.
T Consensus 214 tRIa~~~p~lw~dI~~~N~~~~~~l~~~~~~l~~l~~~l~~~D~~~l~~~~~~a~~~~~~~~~~~~~s~~~i~~~~~~~~ 293 (437)
T PRK08655 214 GRILGQNPYLYASIQMNNPQIPEIHETFIKECEELSELVKNGDREEFVERMKEAAKHFGDTERALGRSDKAIYALNQEFE 293 (437)
T ss_pred HHHhcCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHHH
Confidence 3444555566776654444688888888888888876553 33445777777766555555555555666666666
Q ss_pred hhhhhhccce--eEEEecceecccchhhhhcc
Q 025242 195 GIVGCIFFSS--IMIVVGKTVVGNLSDMVDNF 224 (255)
Q Consensus 195 gL~D~LR~~~--~~~~~~~~~~~~~~~~~~~~ 224 (255)
.|++-.+.-- --|.-||+.||-+....+++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (437)
T PRK08655 294 KLLKSIGKEIGLKHIYSGKIHVGILKKVTPDY 325 (437)
T ss_pred HHHHhhcceeeeEeecCCcEEEEEEEEecCCe
Confidence 6666443322 23446788888776665544
No 118
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=29.14 E-value=3.3e+02 Score=22.54 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=33.4
Q ss_pred HHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025242 102 TAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 155 (255)
Q Consensus 102 ~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~ 155 (255)
...++++--=++|||.-..+-+..=+..+...-...+..+..++.+..|.++.+
T Consensus 16 inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l 69 (164)
T PRK14473 16 INFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAEL 69 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555578999988888776666666555555555555555555554443
No 119
>PRK03918 chromosome segregation protein; Provisional
Probab=28.57 E-value=5.6e+02 Score=26.34 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=6.2
Q ss_pred HHHhHHhhHHHHHHHHH
Q 025242 140 LNLSGELMKKESKKLLE 156 (255)
Q Consensus 140 Lr~svdllk~Es~KL~e 156 (255)
+...++.+..+.+.+.+
T Consensus 205 l~~ei~~l~~e~~~l~~ 221 (880)
T PRK03918 205 VLREINEISSELPELRE 221 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 120
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.41 E-value=5.4e+02 Score=24.73 Aligned_cols=41 Identities=29% Similarity=0.208 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHhHhhHHHHHhhhh-------hcccChHHHHHHHHHHH
Q 025242 24 AKEWVEDLQRSVIQSKDSAIRSARS-------FQHNSSTYLQTLQDFVL 65 (255)
Q Consensus 24 ~~~w~e~~qkt~~es~DsaI~sa~s-------i~~tSs~h~~~~qd~l~ 65 (255)
+.-|...||+ ..++.++||+-|.+ +..-|...++..++=+.
T Consensus 33 AgA~Y~~yQ~-~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~ 80 (301)
T PF06120_consen 33 AGAWYYFYQN-AEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAE 80 (301)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4578888988 78899999999997 77888888887654433
No 121
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.34 E-value=38 Score=27.00 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKK 153 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~K 153 (255)
.-||.|+...+||.+.|+..|++.++
T Consensus 61 ~tFnDcpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 61 ATFNDCPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999875
No 122
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.91 E-value=3e+02 Score=25.80 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=49.5
Q ss_pred cchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Q 025242 110 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY 187 (255)
Q Consensus 110 gPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svY 187 (255)
.|.|--....-..+.--+..+..++.++.+++..+..+.++.+........-|.++..-..+|..|.+=|.+|.+..-
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 455544444444555556666677777777777777777776666666666666666666777777666666655433
No 123
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=27.71 E-value=2.5e+02 Score=20.62 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=8.9
Q ss_pred HHHHHHHhHhhcccchh
Q 025242 97 TGVALTAGLLFMRGPRR 113 (255)
Q Consensus 97 ~g~a~~aglLlLrgPRR 113 (255)
+++++++|+|+=|.+.+
T Consensus 9 a~~Ga~~glL~aP~sG~ 25 (74)
T PF12732_consen 9 AAAGAAAGLLFAPKSGK 25 (74)
T ss_pred HHHHHHHHHHhCCCCcH
Confidence 34445556666565543
No 124
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=27.68 E-value=2.7e+02 Score=21.51 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=28.2
Q ss_pred chHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 125 SEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
|-+.-..-.+++.+.++..++-+.++..++.+....-+..|+
T Consensus 84 ~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 84 SLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677777777777777777777777776666555544
No 125
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=27.67 E-value=4.8e+02 Score=28.60 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
+.-+...+.+++++....+.++.+..++.+...-.+.++..=+.+..+..++|+.+.....+++.+-..+...+
T Consensus 841 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 126
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=27.59 E-value=1.6e+02 Score=25.54 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=32.3
Q ss_pred chHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 025242 25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK 81 (255)
Q Consensus 25 ~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~k 81 (255)
..|++.|++-+.=.+|++=+.-..++.+-..||. ..++.+..+|++-+|.+|.+
T Consensus 22 P~F~~qY~QrL~g~~~e~~~~v~~F~~~A~~~f~---~~~~~li~~~~~s~dp~~~~ 75 (167)
T PF11157_consen 22 PEFAQQYQQRLGGHLDELRRQVAGFQATAARYFG---GDREALIAHYRQSSDPVFRA 75 (167)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHhCCCHHHHh
Confidence 3567778777777777665554444444444322 23566667777777766665
No 127
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=27.53 E-value=8.8e+02 Score=26.88 Aligned_cols=170 Identities=16% Similarity=0.154 Sum_probs=102.2
Q ss_pred HHHHHHHHhHhhHHHHHhhhhhcccChHHHHHH---HHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHH-----H
Q 025242 28 VEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTL---QDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATG-----V 99 (255)
Q Consensus 28 ~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~---qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g-----~ 99 (255)
|++||+-...+-.-+=+...++-.|...-+||+ |.-++...+-+..-|.-+-.++.|--..-+.+....-| +
T Consensus 614 i~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL 693 (961)
T KOG4673|consen 614 IEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELL 693 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHH
Confidence 556777776666555555555666666666664 55566666667777888888887654433333222111 0
Q ss_pred HHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHH
Q 025242 100 ALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQV 179 (255)
Q Consensus 100 a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QI 179 (255)
+.-.++.-.|- ---|.|.--|+|+ .-+..+-.+..++++...+++-|.+.|++|++.-|.|..+-+.++.+--...
T Consensus 694 ~~~~~l~s~~~-q~sllraE~~~l~---~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~~ 769 (961)
T KOG4673|consen 694 SLNFSLPSSPI-QLSLLRAEQGQLS---KSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKRKHKQELQEV 769 (961)
T ss_pred HHhcCCCcchh-HHHHHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 11111111111 1224455555554 3344556677888999999999999999999999999999999988754332
Q ss_pred HHHHHHH-HHHHHhhhhhhhhhc
Q 025242 180 QRLAKQV-YKVETQAAGIVGCIF 201 (255)
Q Consensus 180 q~L~~sv-YKiE~~AagL~D~LR 201 (255)
.=-+..+ -+.|.+-+..||.=|
T Consensus 770 ll~ve~~~k~~e~~~~~~~~ler 792 (961)
T KOG4673|consen 770 LLHVELIQKDLEREKASRLDLER 792 (961)
T ss_pred HHHHHHHHHHhhhCHHHHhhccc
Confidence 2112222 345666666666555
No 128
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=27.42 E-value=1.7e+02 Score=21.23 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=24.5
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRa 158 (255)
....|+.+..+-+..|+.++.+++++..+.
T Consensus 34 ~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 34 VLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 488889999999999999999988886543
No 129
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=27.17 E-value=2.2e+02 Score=27.66 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=26.3
Q ss_pred ccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 123 LRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 123 FqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
|++--+-++.++.++++....|..+.+|+.++-+..-.--.+|.
T Consensus 275 Yr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 275 YRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666666655555544444
No 130
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=26.91 E-value=1.5e+02 Score=27.53 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=46.1
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhcc---HHHHH--------------HhHHHHHHHHHHHHHHHHhh
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRG---ETELK--------------NAGNQVQRLAKQVYKVETQA 193 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RG---rtkLr--------------~aG~QIq~L~~svYKiE~~A 193 (255)
+|..++..|++.-..+++++++|+.+++.-+.++.+= +..-. -+...|++....|-.+|++=
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~ 255 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKK 255 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999888877642 22221 34556666666666666653
No 131
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=26.88 E-value=4.2e+02 Score=23.17 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
.-+.+.++|+...+.++.+...|..+....|+..
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555544443
No 132
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=26.84 E-value=4.6e+02 Score=29.51 Aligned_cols=127 Identities=13% Similarity=0.183 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhH--HHHHHHHhhCchhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhH
Q 025242 60 LQDFVLHGVSQYQTYEDAFFSKV--KDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNV 137 (255)
Q Consensus 60 ~qd~l~~~~sqY~ayEd~fF~kI--Kegv~vA~ehP~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V 137 (255)
.+.|+.+..++-.+.-+..++|- ++.|..-.+.-+.+ --+|+ ||...-.+ |.-+..-+...
T Consensus 46 aeniiqdlrserdalhe~lvdkaglneSviie~sk~vst------------qetri--yRrdv~ll---Eddlk~~~sQi 108 (1265)
T KOG0976|consen 46 AENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVST------------QETRI--YRRDVNLL---EDDLKHHESQI 108 (1265)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhH------------HHHHH--HHHHHHHh---HHHHHHHHHHH
Confidence 36677777777666666666662 44444444443322 12222 34333332 44556667788
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025242 138 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 138 ~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~ 203 (255)
-+|..+...+..|.++|++..+.+|++.+...++|-++...+.-++....-=-..--..-|+|++.
T Consensus 109 riLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk 174 (1265)
T KOG0976|consen 109 RILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDK 174 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 899999999999999999999999999888888888877777666654432222222334555543
No 133
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.67 E-value=5.3e+02 Score=24.63 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 133 Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
++.+.+.....++..+.|++.+++-...+|++++-=+.++......+-++--.--++++
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k 249 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSK 249 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344446666777778888888888888887776666666665555554443333333
No 134
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=26.48 E-value=54 Score=29.16 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=26.0
Q ss_pred hhhHHHHHHHhHhhcccchhH------HHHHhhhcc
Q 025242 94 AAATGVALTAGLLFMRGPRRF------LFRHTFGRL 123 (255)
Q Consensus 94 ~ia~g~a~~aglLlLrgPRRf------Lyr~TlGRF 123 (255)
+++.|.++.+++-.|||.|.+ .--.|+|||
T Consensus 7 ~~~~g~~~~la~s~lpgsralk~~dcevci~~l~rf 42 (178)
T KOG4154|consen 7 VATIGFAARLALSSLPGSRALKEEDCEVCIKTLGRF 42 (178)
T ss_pred HHHHHHHHHHHHHhCCccccCCcccchHHHHHHHHH
Confidence 578899999999999999986 456788998
No 135
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.25 E-value=71 Score=32.97 Aligned_cols=134 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH-----HHHhHHHHHHHHhhC----chhhHHHHHHHhHhhcccchhH-----HHHHhh
Q 025242 55 TYLQTLQDFVLHGVSQYQTYEDA-----FFSKVKDELVSAREH----PAAATGVALTAGLLFMRGPRRF-----LFRHTF 120 (255)
Q Consensus 55 ~h~~~~qd~l~~~~sqY~ayEd~-----fF~kIKegv~vA~eh----P~ia~g~a~~aglLlLrgPRRf-----Lyr~Tl 120 (255)
-|||..|.--| +..+.||.. .|+++||++.+|..- |..+=.+...+..+.++.||-= +|-..+
T Consensus 355 IaFR~Aq~Lap---~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L 431 (564)
T KOG1174|consen 355 IAFRTAQMLAP---YRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL 431 (564)
T ss_pred HHHHHHHhcch---hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh
Confidence 46777776554 455566665 588999999999875 5555555444458889998731 222222
Q ss_pred hcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH---------HHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE---------KEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 121 GRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAE---------eEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
.. +-.+-.|.-...|| .++|+-.+..-+|+|+...-- -++.+-.+.+..+-.+.+--.+.=.+-|+
T Consensus 432 ~~----~P~Y~~AV~~~AEL-~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 432 KI----NPIYTPAVNLIAEL-CQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred cc----CCccHHHHHHHHHH-HHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 11 12234444444555 346666667777777764321 12333334444444444444444444444
Q ss_pred hhhhh
Q 025242 192 QAAGI 196 (255)
Q Consensus 192 ~AagL 196 (255)
.-.||
T Consensus 507 sl~Gl 511 (564)
T KOG1174|consen 507 TLRGL 511 (564)
T ss_pred HHHHH
Confidence 44443
No 136
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.21 E-value=5.5e+02 Score=26.74 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=26.4
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Q 025242 143 SGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVE 190 (255)
Q Consensus 143 svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE 190 (255)
.++.++.+++.|.......+.++++..+++++.-.++...-...-..|
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le 376 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELE 376 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555666666666666666665555544443333
No 137
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=26.21 E-value=5.3e+02 Score=24.26 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=56.1
Q ss_pred chHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 125 SEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
|...+-+-+-++.++|+.-.+++-++..-+.++--.=|++.+.=.++|.+|.+.++ ++.++...+..+.|.
T Consensus 33 s~~~q~~l~nee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~------~~~~k~~~dF~~~Lq 103 (230)
T PF03904_consen 33 SQKTQMSLENEEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFI------DKTEKVHNDFQDILQ 103 (230)
T ss_pred cHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Confidence 55555555666889999999999999999999999999999999999999988775 345555555555543
No 138
>PRK02224 chromosome segregation protein; Provisional
Probab=26.18 E-value=6.1e+02 Score=26.26 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=18.4
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 167 RGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 167 RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
.-..++.+...+|+.+-..+..++.....|...+.
T Consensus 269 ~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~ 303 (880)
T PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEAG 303 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333444455555555566666655555555444
No 139
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.01 E-value=1.6e+02 Score=22.53 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=25.2
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
..++++|+..++.++.+.+++.++...++.++
T Consensus 69 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 100 (104)
T PF13600_consen 69 SPELKELEEELEALEDELAALQDEIQALEAQI 100 (104)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888888888877777654
No 140
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=25.91 E-value=3.5e+02 Score=21.74 Aligned_cols=45 Identities=7% Similarity=0.162 Sum_probs=26.3
Q ss_pred chhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH
Q 025242 111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL 155 (255)
Q Consensus 111 PRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~ 155 (255)
=.+|||....+-+..=+..+...-.+.++.+..++.+..|.++.+
T Consensus 12 l~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l 56 (147)
T TIGR01144 12 CMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVIL 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776666555555555555555555555555544443
No 141
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.90 E-value=1.7e+02 Score=29.95 Aligned_cols=27 Identities=11% Similarity=0.108 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKL 154 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL 154 (255)
+-+...+.+.+||.+.++.+++|.+.+
T Consensus 69 SALteqQ~kasELEKqLaaLrqElq~~ 95 (475)
T PRK13729 69 HATTEMQVTAAQMQKQYEEIRRELDVL 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666665533
No 142
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=25.80 E-value=23 Score=29.19 Aligned_cols=73 Identities=8% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~ 203 (255)
..|...+.+--..++.++....++.+.+..-..+...-...+.++.++|...-+++.+++..+-.|+|.|+..
T Consensus 6 ~~A~~~a~~v~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l 78 (138)
T PF06009_consen 6 DEANETAANVLDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPL 78 (138)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566666666666666655556555556677888888888899999999999999988764
No 143
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.54 E-value=3.6e+02 Score=22.97 Aligned_cols=42 Identities=17% Similarity=0.160 Sum_probs=37.3
Q ss_pred cchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 124 qSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
.+.+++-+.-+++.+..+..|+.+.+--.+|+.-++-||.-+
T Consensus 63 ~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~eaE~nL 104 (114)
T KOG3501|consen 63 SDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVSEAEQNL 104 (114)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999888643
No 144
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=25.25 E-value=1.1e+02 Score=23.01 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=17.7
Q ss_pred hHHHHHHhHHhhHHHHHHHHH
Q 025242 136 NVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 136 ~V~eLr~svdllk~Es~KL~e 156 (255)
+|.||..-|.+|+.|+.+++.
T Consensus 22 Sv~EL~~RIa~L~aEI~R~~~ 42 (59)
T PF06698_consen 22 SVEELEERIALLEAEIARLEA 42 (59)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999888864
No 145
>PF04588 HIG_1_N: Hypoxia induced protein conserved region; InterPro: IPR007667 The hypoxia induced gene 1 (HIG1) or hypoglycemia/hypoxia inducible mitochondrial protein (HIMP1) is up-regulated by stresses of the microenvironment such as low oxygen or low glucose conditions. HIG1 is a mitochondrial inner membrane protein, which is ubiquitously expressed. It is predicted to be an integral membrane protein consisting of two hydrophobic helices, 21-23 residues in length that might tend to form a hairpin-like loop across the bilayer. HIG1 could be implied in apoptotic or cytoprotective signals. HIG1 is a member of a well conserved eukaryote protein family. The predicted transmembrane helice (TMH) and loop regions represent the most highly conserved regions in these proteins [, ]. The profile we developed covers the predicted TMH and loop regions. This domain is found in proteins thought to be involved in the response to hypoxia []. It is also found in altered inheritance of mitochondria proteins.; PDB: 2LOM_A 2LON_A.
Probab=25.19 E-value=43 Score=23.89 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=12.9
Q ss_pred HhhCchhhHHHHHHHhHhh
Q 025242 89 AREHPAAATGVALTAGLLF 107 (255)
Q Consensus 89 A~ehP~ia~g~a~~aglLl 107 (255)
.++||.+..|++.+++.+.
T Consensus 1 ~ke~plv~ig~~~~~~~l~ 19 (54)
T PF04588_consen 1 FKENPLVPIGMLATVGALA 19 (54)
T ss_dssp S-S--CHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 3689999999888887764
No 146
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=25.04 E-value=5e+02 Score=24.11 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=47.1
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccce
Q 025242 140 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSS 204 (255)
Q Consensus 140 Lr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~~ 204 (255)
+.+.++....+..+|.++...=.+.|-.-...|.++.+.+..+..+..+.-....+-++.|+..+
T Consensus 231 ~~~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 295 (304)
T PF02646_consen 231 QNKNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRVGNIARRIEKLKELG 295 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcc
Confidence 33445555566666666666666667777778888888888888888888887777777777653
No 147
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.96 E-value=3.7e+02 Score=22.82 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHhHHHHHHhHHhhHHHHH------------HHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q 025242 131 VRAEKNVNELNLSGELMKKESK------------KLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVG 198 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~------------KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D 198 (255)
++--.+..+|+..+..++.|.. ||.++...+|+|++.=...+...-..+...++.+.. +.-
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 108 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLW-------VLT 108 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------------
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 4555667777777777777764 567778888888776555555555555554444433 233
Q ss_pred hhccceeEEEecceecccch
Q 025242 199 CIFFSSIMIVVGKTVVGNLS 218 (255)
Q Consensus 199 ~LR~~~~~~~~~~~~~~~~~ 218 (255)
.+-..-+++.-+||.|--|.
T Consensus 109 ~~~~~~l~~~~rk~pV~~lp 128 (161)
T PF04420_consen 109 TLPFFVLRFWYRKTPVFYLP 128 (161)
T ss_dssp --------------------
T ss_pred HHHHhhhheeecCceEEEEC
Confidence 33334455566787776654
No 148
>PRK10132 hypothetical protein; Provisional
Probab=24.82 E-value=3.9e+02 Score=21.88 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHhHhhccc
Q 025242 67 GVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRG 110 (255)
Q Consensus 67 ~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~aglLlLrg 110 (255)
........++.+=+++=.+|- |++|+++.+|+|+-||
T Consensus 71 ~~~a~~~~~~~V~~~Pw~svg-------iaagvG~llG~Ll~RR 107 (108)
T PRK10132 71 ARDAVGCADTFVRERPWCSVG-------TAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHhCcHHHHH-------HHHHHHHHHHHHHhcc
Confidence 344444555555566655553 6889999999997764
No 149
>PRK09343 prefoldin subunit beta; Provisional
Probab=24.69 E-value=2.8e+02 Score=22.55 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Q 025242 156 ERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 156 eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
.+...-|+...+=+.++.+.-.+|+.++.+.|+-
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~ 118 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQ 118 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444444455555566677777777777777653
No 150
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=24.59 E-value=1.4e+02 Score=28.95 Aligned_cols=45 Identities=16% Similarity=0.031 Sum_probs=41.3
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHH
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETE 171 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtk 171 (255)
.+.|+..+....+.+-+|+.++++..+|..-.+.++++..+=|++
T Consensus 137 ~~rf~~Ied~~~~kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgk 181 (308)
T PF06717_consen 137 NYRFNQIEDEYNRKKNKIPGLNKQISALDKQIVAINKKIDRYWGK 181 (308)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 467899999999999999999999999999999999999887765
No 151
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=24.57 E-value=5e+02 Score=27.77 Aligned_cols=37 Identities=27% Similarity=0.250 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
.+.+-+.+..+|+--++.++.|..+|..+..-+-.++
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666777777777766665554444
No 152
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.45 E-value=3.3e+02 Score=27.09 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=18.1
Q ss_pred HHHHhHhhcccchhHHHHHhhhcccch
Q 025242 100 ALTAGLLFMRGPRRFLFRHTFGRLRSE 126 (255)
Q Consensus 100 a~~aglLlLrgPRRfLyr~TlGRFqSE 126 (255)
+...|++++-+.=++|||.++++|.=.
T Consensus 165 ~s~f~~fAl~r~lk~lyR~~l~~L~l~ 191 (362)
T KOG3875|consen 165 GSFFGIFALFRRLKILYRLLLKMLKLS 191 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344555555455559999999999633
No 153
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=24.41 E-value=1.2e+02 Score=22.25 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=21.5
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~e 156 (255)
..+.|+.+..+-.+.+++++.+++++..
T Consensus 43 ~~~~~~~~l~es~~ki~~Lr~~L~k~~~ 70 (72)
T cd00089 43 LLAEAEQMLRESKQKLELLKMQLEKLKQ 70 (72)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888877753
No 154
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=24.18 E-value=8e+02 Score=26.13 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHH
Q 025242 171 ELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 171 kLr~aG~QIq~L~~svYK 188 (255)
-|+++-++++.+++.+-+
T Consensus 578 ~l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 578 AIKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 155
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=23.97 E-value=5.9e+02 Score=23.64 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=48.4
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
+.-.|++++++--.+.-...++++...+|+-+||.....=--.||.-+..+.+|-.+-=+.
T Consensus 75 iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~ 135 (205)
T KOG1003|consen 75 IAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKL 135 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 4556788888888888888999999999999999888877777777777777776655443
No 156
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=23.92 E-value=4.3e+02 Score=25.14 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=45.1
Q ss_pred HHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHH------HHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Q 025242 115 LFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLL------ERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (255)
Q Consensus 115 Lyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~------eRaalAEeEm~RGrtkLr~aG~QIq~L~~sv 186 (255)
-||.+|--. ...|..|...|.--+.+..|++||. .|+...|.|+.|-..+...+..||-++=+..
T Consensus 125 ~yR~~LK~I-------R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 125 QYRIHLKSI-------RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 366666544 4455566666666666667777775 4778888899998888888888887664443
No 157
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=23.82 E-value=2.4e+02 Score=22.77 Aligned_cols=34 Identities=29% Similarity=0.424 Sum_probs=21.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
+-+++|.+|...++.++.|...|......+.+|.
T Consensus 46 rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek 79 (87)
T PF12709_consen 46 RWEKKVDELENENKALKRENEQLKKKLDTEREEK 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666667777777766666655555544
No 158
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=23.79 E-value=2.9e+02 Score=21.28 Aligned_cols=42 Identities=24% Similarity=0.195 Sum_probs=32.6
Q ss_pred chHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 125 SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 125 SEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
|=+.-..-.+++.+.|+..++.+.++.+++.++....+..+.
T Consensus 74 s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 74 SLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445677888889999999999999888888877776654
No 159
>PF06109 HlyE: Haemolysin E (HlyE); InterPro: IPR010356 This family consists of several enterobacterial haemolysin (HlyE) proteins. Haemolysin E (HlyE) is a novel pore-forming toxin of Escherichia coli, Salmonella typhi, and Shigella flexneri. HlyE is unrelated to the well characterised pore-forming E. coli haemolysins of the RTX family, haemolysin A (HlyA), and the enterohaemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, it is evident that expression of HlyE in the absence of the RTX toxins is sufficient to give a haemolytic phenotype in E. coli. HlyE is a protein of 34 kDa that is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR, such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonisation of the host [].; PDB: 2WCD_P 1QOY_A.
Probab=23.47 E-value=4.5e+02 Score=24.92 Aligned_cols=67 Identities=12% Similarity=0.124 Sum_probs=45.6
Q ss_pred hHhhHHHHHhhhh-hcccChHH-HHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHh-------hCchhhHHHHHH
Q 025242 36 IQSKDSAIRSARS-FQHNSSTY-LQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAR-------EHPAAATGVALT 102 (255)
Q Consensus 36 ~es~DsaI~sa~s-i~~tSs~h-~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~-------ehP~ia~g~a~~ 102 (255)
.|+.|-|.+.-.. +.+-=||+ |..+..-+.+++.+|...-..+++.||--++-.. .--|.-||+++-
T Consensus 14 i~tad~aldlynk~ldqvipw~tf~~tikelsrfk~eysq~as~lvg~ik~llm~sqd~yfeatq~vyewcgv~tq 89 (299)
T PF06109_consen 14 IDTADKALDLYNKYLDQVIPWQTFNDTIKELSRFKQEYSQSASTLVGDIKSLLMNSQDRYFEATQTVYEWCGVTTQ 89 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccchHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcchHhHHHHHHHHHHHHhHHHH
Confidence 3334444433322 55555664 7888889999999999999999999998776433 335667787753
No 160
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.47 E-value=5.7e+02 Score=23.28 Aligned_cols=8 Identities=13% Similarity=0.185 Sum_probs=2.9
Q ss_pred HHHhHHHH
Q 025242 172 LKNAGNQV 179 (255)
Q Consensus 172 Lr~aG~QI 179 (255)
+.++..+|
T Consensus 212 l~~~~~~l 219 (423)
T TIGR01843 212 LGRLEAEL 219 (423)
T ss_pred HHHHHHHH
Confidence 33333333
No 161
>PF09442 DUF2018: Domain of unknown function (DUF2018); InterPro: IPR018563 This entry represents proteins of unknown function. The crystal structure of HP0242, a hypothetical protein from Helicobacter pylori (Campylobacter pylori) has been determined. It reveals an acid-adaptive protein possibly of physiological significance when H. pylori colonises the human stomach. The protein adopts a unique four alpha-helical triangular conformations. The biologically active form is thought to be a tetramer. The gene exist in an operon along with 6 other genes where the gene products appear to be related to iron storage and haem biosynthesis []. ; PDB: 3MLG_B 3MLI_C 2OUF_A 2BO3_A.
Probab=23.45 E-value=1.1e+02 Score=24.30 Aligned_cols=25 Identities=36% Similarity=0.412 Sum_probs=20.3
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 142 LSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 142 ~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
.+-+++++|++|+.+|.++.|.=+.
T Consensus 16 An~~lv~~ELe~~ler~aamE~llE 40 (81)
T PF09442_consen 16 ANRNLVENELEKLLERLAAMEELLE 40 (81)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999987543
No 162
>PRK12472 hypothetical protein; Provisional
Probab=23.42 E-value=5e+02 Score=27.02 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L 182 (255)
..|.+.-+|.++.+..-..|.+.|...+..+|....|--.+|.++-++|...
T Consensus 200 ~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a 251 (508)
T PRK12472 200 EDAARAADEAKTAAAAAAREAAPLKASLRKLERAKARADAELKRADKALAAA 251 (508)
T ss_pred HHHHHhHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3466667788888888888888888888888888888888888888877654
No 163
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=23.21 E-value=4e+02 Score=27.77 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=24.8
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 025242 142 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197 (255)
Q Consensus 142 ~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~ 197 (255)
...+.++.+++.+++++.+.+.+-.-=+.+|++++..=-+.+...|..=-+++.|.
T Consensus 283 ~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~ 338 (546)
T PF07888_consen 283 QENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLK 338 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 33344444444444444444444333344444444443444444444444444443
No 164
>PRK06285 chorismate mutase; Provisional
Probab=22.94 E-value=1.9e+02 Score=22.53 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=26.4
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHH-HHHHHHHH
Q 025242 132 RAEKNVNELNLSGELMKKESKKLL-ERAALAEK 163 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~-eRaalAEe 163 (255)
.+..+.+++|..||.+-.++-+|+ +|+.++++
T Consensus 4 ~~~~~L~elR~~ID~ID~~iv~Ll~~R~~l~~~ 36 (96)
T PRK06285 4 SAEKRLNEIRKRIDEIDEQIIDLIAERTSLAKE 36 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999985 67777665
No 165
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=22.94 E-value=4.4e+02 Score=21.84 Aligned_cols=51 Identities=16% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK 184 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~ 184 (255)
|+.+.....++++++.|..+.+.....-++.++.=..+.+...++++...+
T Consensus 33 E~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~ 83 (160)
T PF13094_consen 33 ERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEK 83 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 166
>PLN02829 Probable galacturonosyltransferase
Probab=22.94 E-value=2.2e+02 Score=30.16 Aligned_cols=92 Identities=16% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHhHHHHHHHHhhCchhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHH----
Q 025242 75 EDAFFSKVKDELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKE---- 150 (255)
Q Consensus 75 Ed~fF~kIKegv~vA~ehP~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~E---- 150 (255)
=|.....+||-+.+|+..|.|+-.-+-.--.--|+.-.|=+ .+.+|---+-..|=..+..+++.|.+.+...|.-
T Consensus 181 ~d~~v~~lkDql~~AkaY~~iak~~~~~~l~~el~~~i~e~-~r~l~~a~~d~~lp~~~~~~~~~m~~~i~~ak~~~~d~ 259 (639)
T PLN02829 181 PDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEV-QRVLGDASKDSDLPKNANEKLKAMEQTLAKGKQMQDDC 259 (639)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHH-HHHHhhccCCCCCChhHHHHHHHHHHHHHHHHhcccCH
Confidence 47888999999999999987665443333222232222211 4445544444555566888999998888766644
Q ss_pred ---HHHHHHHHHHHHHHHhc
Q 025242 151 ---SKKLLERAALAEKEMIR 167 (255)
Q Consensus 151 ---s~KL~eRaalAEeEm~R 167 (255)
.+||..-....|+++..
T Consensus 260 ~~~~~KLr~~l~~~Ee~~~~ 279 (639)
T PLN02829 260 SIVVKKLRAMLHSAEEQLRV 279 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888753
No 167
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=22.84 E-value=2.3e+02 Score=22.43 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
..-++++.+.|+..++.+.+++.++.+....-+..+.
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~ 125 (129)
T cd00584 89 IEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778889999999999999999999888777666554
No 168
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.82 E-value=6.6e+02 Score=29.09 Aligned_cols=67 Identities=15% Similarity=0.227 Sum_probs=34.6
Q ss_pred hhHHHHH-HHhHhhcccchhHHHHHhh----------hcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHH
Q 025242 95 AATGVAL-TAGLLFMRGPRRFLFRHTF----------GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALA 161 (255)
Q Consensus 95 ia~g~a~-~aglLlLrgPRRfLyr~Tl----------GRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalA 161 (255)
|+.+... ++-++.=+.-||-++--.. ..+...|.-+.+.+..++++...++-++.+.++..+...+.
T Consensus 263 I~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 263 ITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred hhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 3344444555777765443 33444445555555555566666666666665555444433
No 169
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=22.60 E-value=78 Score=30.14 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=40.5
Q ss_pred HHHHHhHhhHHHHHhhhh---hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHH
Q 025242 31 LQRSVIQSKDSAIRSARS---FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTA 103 (255)
Q Consensus 31 ~qkt~~es~DsaI~sa~s---i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~a 103 (255)
.+|+..--++-.+.|+.= ++.+-|..-...+-++.+.+| .+||......+.||+++=|-|++-+.+++..
T Consensus 27 ~~rly~~lv~~gv~Selll~~l~rn~s~n~~~~a~~~qd~ls---~~~D~ll~~~~k~VMm~WEtpiMha~A~ai~ 99 (271)
T KOG1709|consen 27 QSRLYRRLVEAGVPSELLLFALGRNESPNADGNAPYLQDYLS---TAEDTLLDSLGKGVMMRWETPIMHALAEAIS 99 (271)
T ss_pred HHHHHHHHHHcCCchhhhhhccccccCccccccchHHHHHHh---hhhhHHHhhccchhhhhhhhHHHHHHHHHHh
Confidence 455555555555555442 333322212222222222222 3999999999999999999999876655443
No 170
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.59 E-value=7.1e+02 Score=27.73 Aligned_cols=77 Identities=16% Similarity=0.074 Sum_probs=39.8
Q ss_pred cchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 124 RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 124 qSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
..+..-+....+....|...++.++.|...+.+...-+++++.....++..+-.+..++....-..+.++.+-++.+
T Consensus 870 ~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1311)
T TIGR00606 870 KSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444555555555555555555555555555555555555555555555554444444444444443
No 171
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=22.47 E-value=2.3e+02 Score=25.19 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=26.7
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHh
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMI 166 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~ 166 (255)
+-+.+.++|++.++.|.+|.++|.++...-|++|.
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~ 142 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888888887777774
No 172
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=22.43 E-value=4.8e+02 Score=22.04 Aligned_cols=61 Identities=15% Similarity=0.279 Sum_probs=43.1
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHH----HHHHHHhccHHHHHHhHHHHHHHHHHHH
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAA----LAEKEMIRGETELKNAGNQVQRLAKQVY 187 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaa----lAEeEm~RGrtkLr~aG~QIq~L~~svY 187 (255)
+.+.+.|.+-.++.+.++-..+.+..+..+... ..|.+..+...++-+.-..--..+..++
T Consensus 93 ~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 93 KELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999888888776 6777777766555554444433333333
No 173
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.12 E-value=5e+02 Score=26.71 Aligned_cols=93 Identities=20% Similarity=0.163 Sum_probs=44.7
Q ss_pred chhhHHHHHHHhHhhcccch--h---HHHHHhhhcccchHHHH------------HHHHHhHHHHHHhHHhh-------H
Q 025242 93 PAAATGVALTAGLLFMRGPR--R---FLFRHTFGRLRSEEAMF------------VRAEKNVNELNLSGELM-------K 148 (255)
Q Consensus 93 P~ia~g~a~~aglLlLrgPR--R---fLyr~TlGRFqSEEaLl------------~~Ae~~V~eLr~svdll-------k 148 (255)
++++..++++++++.++.-. . =-=....--+..||.-. .--..+++++|..++.+ +
T Consensus 7 k~L~~~v~~~~~~i~ik~~~~~~~~~~~~~~~~~~ltpee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~ 86 (472)
T TIGR03752 7 KVLVIPVILVVVLIGIKSFSGSGSPEPTSDTALAELSPEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALK 86 (472)
T ss_pred eehHHHHHHHHHHhheeecCCCCCCCCCcccccccCCcchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766320 0 00000011244444222 22334555555555444 4
Q ss_pred HHHHHHHH-----------HHHHHHHHHhccHHHHHHhHHHHHHHHHH
Q 025242 149 KESKKLLE-----------RAALAEKEMIRGETELKNAGNQVQRLAKQ 185 (255)
Q Consensus 149 ~Es~KL~e-----------RaalAEeEm~RGrtkLr~aG~QIq~L~~s 185 (255)
+|-++|.+ +...++.|+..-+..|++.-.+++.++.+
T Consensus 87 ~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 87 AENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555543 33344556666666666555555555544
No 174
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=22.02 E-value=3.3e+02 Score=23.93 Aligned_cols=117 Identities=12% Similarity=0.055 Sum_probs=72.7
Q ss_pred hHhhHHHHHhhhh-hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHh---HHHHHH-HHhhCchhhHHHHHHHhHhhccc
Q 025242 36 IQSKDSAIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK---VKDELV-SAREHPAAATGVALTAGLLFMRG 110 (255)
Q Consensus 36 ~es~DsaI~sa~s-i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~k---IKegv~-vA~ehP~ia~g~a~~aglLlLrg 110 (255)
++.+-.+|.+|-+ -|=-|+..+.++++|+..+.....++|-.-=+. |+++.. +-..||.++...+- .-+
T Consensus 2 ~~~it~~i~~AD~~gRYls~~eL~~l~~~~~~~~~Rl~aa~~L~~na~~IV~~A~~~l~~~~P~l~~~GG~------~y~ 75 (169)
T CHL00089 2 QDAITAIINRYDLTGKYLDKNAITQLNSYFSSASDRIKIVEIINAQASNIIKEASAQLFEEQPELLRPGGN------AYT 75 (169)
T ss_pred CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCccCCCCC------Ccc
Confidence 4566677888876 778899999999999999999998888432221 455555 44578987664332 235
Q ss_pred chh----------HHHHHhhhcc-----cchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHH
Q 025242 111 PRR----------FLFRHTFGRL-----RSEEAMFVRAEKNVNELNLSGELMKKESKKLLERA 158 (255)
Q Consensus 111 PRR----------fLyr~TlGRF-----qSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRa 158 (255)
||| ||=+-|-+.. .-+|-.+++-..=++.|...+..+-.=++.+.+.+
T Consensus 76 ~~r~~aC~RD~~~~LR~itYalvaGd~~~L~e~~L~GlrE~Y~~LgvP~~~~i~al~~mk~~~ 138 (169)
T CHL00089 76 TRRYAACLRDIEYYLRYASYAIVAGDTNILDERVLDGLKDTYNSLGVPIAPTVRSIELLKEII 138 (169)
T ss_pred hHHHHHHHHHHHhhhhheeeeeecCCchHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 554 1111122211 12566677776667776666666655555554443
No 175
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=22.02 E-value=4e+02 Score=22.77 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHhhCchhhHHHHHHHhHhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025242 85 ELVSAREHPAAATGVALTAGLLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (255)
Q Consensus 85 gv~vA~ehP~ia~g~a~~aglLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeE 164 (255)
.......+-.+++.++++++++.....++..-+. .-....+-..|.+...+....|++.
T Consensus 25 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~k---------------------~~~~~gls~~e~~~~~~~l~ea~~~ 83 (199)
T PF10112_consen 25 SFFGFDHSFLLSLLIGAVAFAVVYLFGKRRQRRK---------------------FLKEAGLSDREYEYIREILEEAKEK 83 (199)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhcccccchh---------------------HhhhcCCChhHHHHHHHHHHHHHHH
Q ss_pred HhccHHHHHHhHHHHHHHH--HHHHHHHHhhhhhhhhh
Q 025242 165 MIRGETELKNAGNQVQRLA--KQVYKVETQAAGIVGCI 200 (255)
Q Consensus 165 m~RGrtkLr~aG~QIq~L~--~svYKiE~~AagL~D~L 200 (255)
+.+ |+++-.+|+++- ..++++++.|..+.+.+
T Consensus 84 i~~----i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v 117 (199)
T PF10112_consen 84 IRR----IEKAIKRIRDLEMIEKVSRIEKIARRIFKYV 117 (199)
T ss_pred HHH----HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
No 176
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []. Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....
Probab=21.90 E-value=22 Score=29.56 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=33.3
Q ss_pred EEEec--ceecccchhhhhccCcccceeeeeee--------ecCCCCcccccccc
Q 025242 206 MIVVG--KTVVGNLSDMVDNFNMQDKIFLTILI--------CDRKGSSLFHGSHL 250 (255)
Q Consensus 206 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~ 250 (255)
..+.| |||+-|+.|..+..|-....++..+. .|.+|.-+++|+|-
T Consensus 24 v~~eG~~KTvi~Nf~dI~~~L~R~p~~~~ky~~~ELgt~~~id~~~~lii~G~~~ 78 (125)
T PF01873_consen 24 VKIEGKKKTVIVNFVDICKALNRDPEHVLKYFGKELGTQGSIDGKGRLIINGRFS 78 (125)
T ss_dssp EEEETSTEEEETTHHHHHHHHTSSHHHHHHHHHHHSSSEEEEETTTEEEEESSSS
T ss_pred EEEEccceeeeecHHHHHHHHCCCHHHHHHHHHHHHCCceEECCCCEEEEEEecC
Confidence 45667 99999999999998887766554443 35667777888773
No 177
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.85 E-value=2.9e+02 Score=27.16 Aligned_cols=72 Identities=18% Similarity=0.097 Sum_probs=36.6
Q ss_pred hHHHHHHHhHhhcc-cchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhc
Q 025242 96 ATGVALTAGLLFMR-GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIR 167 (255)
Q Consensus 96 a~g~a~~aglLlLr-gPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~R 167 (255)
.+.|++.+..+++| +++.-|-+..-.++..-...+...-..-..-......+-++...++.....+.-|-.+
T Consensus 138 Gi~~a~~v~~l~~P~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~ 210 (650)
T PF04632_consen 138 GILCATLVSMLFFPQRARRQLRRRLAQRLADLARWLAALLDGDPDPAAERRRLARDIAALESLLSHARYESPR 210 (650)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHhhccccCch
Confidence 34455667778888 6777777666666655444444332221111112333444444455444444444433
No 178
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.74 E-value=88 Score=31.94 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAG 195 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~Aag 195 (255)
.......+..++ .||.|++|+++|++... .+-+.+-|+|+++++
T Consensus 20 ~~a~~~~~~~~q-kie~L~kql~~Lk~q~~---------------------~l~~~v~k~e~~s~~ 63 (489)
T PF11853_consen 20 AAAMADDIDLLQ-KIEALKKQLEELKAQQD---------------------DLNDRVDKVEKHSAG 63 (489)
T ss_pred hhhhhhhhHHHH-HHHHHHHHHHHHHHhhc---------------------ccccccchhhHhhhc
No 179
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.65 E-value=3.1e+02 Score=21.02 Aligned_cols=35 Identities=26% Similarity=0.166 Sum_probs=27.5
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
..+-+...+|+..++-++.|.+.+.+...-|+..+
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555699999999999999988888888765
No 180
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.57 E-value=8.2e+02 Score=25.58 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=19.5
Q ss_pred ccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025242 167 RGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 167 RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~ 203 (255)
|=+..|..+.+|+....----+.+++...|+..|..+
T Consensus 180 rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~ 216 (546)
T KOG0977|consen 180 RLREELARARKQLDDETLLRVDLQNRVQTLLEELAFL 216 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3334444444455544444455566666666666554
No 181
>PRK10325 heat shock protein GrpE; Provisional
Probab=21.52 E-value=75 Score=28.23 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=22.6
Q ss_pred HHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhhccc
Q 025242 162 EKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 162 EeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~LR~~ 203 (255)
...++|=.++.-|-.+..++-... .|.+++-+..|++.+-..
T Consensus 59 ~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lLpv~Dnl 102 (197)
T PRK10325 59 RDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL 102 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 345556556655555555554443 355666666666554433
No 182
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=21.48 E-value=3.2e+02 Score=26.04 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=7.2
Q ss_pred HHHHHhHhhcccchhHH
Q 025242 99 VALTAGLLFMRGPRRFL 115 (255)
Q Consensus 99 ~a~~aglLlLrgPRRfL 115 (255)
...+.|++.+ ||++.
T Consensus 175 ~~~g~Glv~i--P~~l~ 189 (471)
T PF04791_consen 175 ILLGYGLVAI--PRDLW 189 (471)
T ss_pred HHHhccHHHH--HHHHH
Confidence 3344455555 55543
No 183
>PRK14146 heat shock protein GrpE; Provisional
Probab=21.45 E-value=4.7e+02 Score=23.80 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=16.1
Q ss_pred HHHHhccHHHHHHhHHHHHHHHHH--HHHHHHhhhhhhhhh
Q 025242 162 EKEMIRGETELKNAGNQVQRLAKQ--VYKVETQAAGIVGCI 200 (255)
Q Consensus 162 EeEm~RGrtkLr~aG~QIq~L~~s--vYKiE~~AagL~D~L 200 (255)
...++|-.+++-|..+..++-... -|.+|+-+.+|+..+
T Consensus 74 ~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLpv~ 114 (215)
T PRK14146 74 KDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLNPI 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333344444444443333333322 244555555554433
No 184
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=21.29 E-value=92 Score=25.95 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=35.4
Q ss_pred hhhhhhhhhccceeEEEecceecccchhhhhccCcccceeeee---eeecCCCCccccccccc
Q 025242 192 QAAGIVGCIFFSSIMIVVGKTVVGNLSDMVDNFNMQDKIFLTI---LICDRKGSSLFHGSHLI 251 (255)
Q Consensus 192 ~AagL~D~LR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 251 (255)
.-..|+.. +...|++.=|.++.+.+-+- ++-|.++|+| ++.. .|..+|.|.+.-
T Consensus 126 ~l~~L~~~-g~~~i~v~GG~~l~~~~l~~----gLvDEl~l~i~Pv~lG~-~~~~lf~~~~~~ 182 (200)
T PF01872_consen 126 ALRRLKER-GGKDILVEGGGSLNGSFLRA----GLVDELSLTIAPVLLGG-GGPPLFDGGSPR 182 (200)
T ss_dssp HHHHHHHT-TTSEEEEEEHHHHHHHHHHT----T--SEEEEEEESEE-SS-TSEESSTSSTSS
T ss_pred HHHHHHhc-CCCEEEEechHHHHHHHHhC----CCCCEEEEEEeeEEeCC-CCCCCCCCCCCc
Confidence 33444445 67788888889888876532 5556677765 4455 789999998764
No 185
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=21.26 E-value=4.8e+02 Score=21.58 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhh
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAA 194 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~Aa 194 (255)
..+......+.++...++....-.+...+.+..+...+..|...+.+..+.+..+...+-.+...+.
T Consensus 32 ~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~i~~~~~ 98 (262)
T smart00283 32 ASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELEESSDEIGEIVS 98 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555667777777777777777777777777778888887777777777666665554444433
No 186
>PRK03918 chromosome segregation protein; Provisional
Probab=21.23 E-value=8e+02 Score=25.23 Aligned_cols=12 Identities=8% Similarity=0.058 Sum_probs=6.7
Q ss_pred HHHHhhhcccch
Q 025242 115 LFRHTFGRLRSE 126 (255)
Q Consensus 115 Lyr~TlGRFqSE 126 (255)
-+++.+.++++.
T Consensus 589 ~~~~~~~~l~~~ 600 (880)
T PRK03918 589 ELEERLKELEPF 600 (880)
T ss_pred HHHHHHHHhhhh
Confidence 455566666554
No 187
>PF13997 YqjK: YqjK-like protein
Probab=21.10 E-value=1.3e+02 Score=22.91 Aligned_cols=32 Identities=38% Similarity=0.547 Sum_probs=22.0
Q ss_pred hHHHHHHHHhhCchhhHHHHHHHhHhhcccchhHH
Q 025242 81 KVKDELVSAREHPAAATGVALTAGLLFMRGPRRFL 115 (255)
Q Consensus 81 kIKegv~vA~ehP~ia~g~a~~aglLlLrgPRRfL 115 (255)
+-=+.|...+.||...+|+.+ ++.+++|||++
T Consensus 28 r~w~~l~~lr~~~~l~~g~~a---~~~ir~P~r~~ 59 (73)
T PF13997_consen 28 RGWQTLRSLRRHPILGSGVLA---LYGIRHPRRLI 59 (73)
T ss_pred hHHHHHHHHHHhHHHHHHHHH---HHHHhChHHHH
Confidence 334556678899987666554 55678899854
No 188
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=21.01 E-value=5.5e+02 Score=25.08 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=42.0
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHH----hHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN----AGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~----aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
-+....++..++...+|.+++|..++-+....+-+. .....+|++ -..+|+.+....+.+|.+-..++-.|-
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~-~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRK-GEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344566777777777888877777776666431110 001233444 445666666777777777666655443
No 189
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=20.99 E-value=3.2e+02 Score=23.34 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=30.7
Q ss_pred HHHHHHHHHhHHHHHH---hHHhhHHHHHHHHHHHHHHHHHHhc
Q 025242 127 EAMFVRAEKNVNELNL---SGELMKKESKKLLERAALAEKEMIR 167 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~---svdllk~Es~KL~eRaalAEeEm~R 167 (255)
+..+..+...++.|+. .++.++++++.|......++++++-
T Consensus 33 k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~ 76 (155)
T PF06810_consen 33 KTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEA 76 (155)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777 6778888888888888877777754
No 190
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=20.97 E-value=2.5e+02 Score=26.02 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=42.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccceeEEEe--cceecccchhhhh
Q 025242 145 ELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIVV--GKTVVGNLSDMVD 222 (255)
Q Consensus 145 dllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~~~~~~~--~~~~~~~~~~~~~ 222 (255)
+.++.+.++|.+.......|... +...-.+++..++..-......+.+.+.|.+..+++.. |.+++-|..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKIR----LERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFID 77 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCC
Confidence 34445566666555555555543 33333345555555555555556666666666555443 5566666677766
Q ss_pred ccCc
Q 025242 223 NFNM 226 (255)
Q Consensus 223 ~~~~ 226 (255)
....
T Consensus 78 ~~~l 81 (364)
T TIGR01242 78 RKSL 81 (364)
T ss_pred HhHC
Confidence 6433
No 191
>PRK10869 recombination and repair protein; Provisional
Probab=20.87 E-value=7.8e+02 Score=24.89 Aligned_cols=85 Identities=7% Similarity=-0.004 Sum_probs=54.8
Q ss_pred chhHHHHHhhhccc-chHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Q 025242 111 PRRFLFRHTFGRLR-SEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 111 PRRfLyr~TlGRFq-SEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
-|-+++++--++|- |.|.++...++--++|. .++......++|++....+++++..=..+|.+..++ .+-+.
T Consensus 303 ~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~-~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~------aA~~l 375 (553)
T PRK10869 303 QRLSKQISLARKHHVSPEELPQHHQQLLEEQQ-QLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQR------YAKEL 375 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Confidence 47778888888887 78888777666555553 456666677788888888888777766666654443 12334
Q ss_pred HHhhhhhhhhhcc
Q 025242 190 ETQAAGIVGCIFF 202 (255)
Q Consensus 190 E~~AagL~D~LR~ 202 (255)
++....-+.+|.-
T Consensus 376 ~~~v~~~L~~L~m 388 (553)
T PRK10869 376 AQLITESMHELSM 388 (553)
T ss_pred HHHHHHHHHHcCC
Confidence 4444445555543
No 192
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=20.84 E-value=7.6e+02 Score=23.76 Aligned_cols=115 Identities=10% Similarity=0.122 Sum_probs=70.1
Q ss_pred chHHHHHHHHHhHhhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhCchhhHHHHHHHh
Q 025242 25 KEWVEDLQRSVIQSKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREHPAAATGVALTAG 104 (255)
Q Consensus 25 ~~w~e~~qkt~~es~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~ehP~ia~g~a~~ag 104 (255)
..-++++++.+.++.+.-...-..+-+.|.. .+..+-...+...+...|+.+-..++..+.-+ .+|-.+.-+..-.+
T Consensus 263 ~~~~~~i~~~~~~~~~~~~~~~yd~ld~~~~--~~w~~~~~~f~~~i~~lE~~l~~~l~~~f~~~-~s~~~~~~ll~~f~ 339 (579)
T PF08385_consen 263 SEGIDEIEEEFNEAYEPFKSLDYDILDVSNE--EEWERDFSEFRERIEDLERRLANILRQAFDDC-SSPEEAFRLLQKFK 339 (579)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCCCcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHH
Confidence 4455555555554443322222225566666 66677778888899999999999999998655 55655555555555
Q ss_pred HhhcccchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhH
Q 025242 105 LLFMRGPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMK 148 (255)
Q Consensus 105 lLlLrgPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk 148 (255)
-|+ .||+ .+..+...+ +.+++....+++.++...+..+
T Consensus 340 ~L~-~Rp~---I~~~l~~~~--~~ll~~~~~ei~~~~~~f~~~~ 377 (579)
T PF08385_consen 340 SLL-NRPR---IRKALQEKY--EQLLQQFKEEIDQLKKIFDNQK 377 (579)
T ss_pred hHh-cchH---HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 544 6665 333333221 3566777777777766666555
No 193
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=20.75 E-value=4.8e+02 Score=26.14 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=19.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHH
Q 025242 144 GELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQR 181 (255)
Q Consensus 144 vdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~ 181 (255)
++..|.|...|.++...++.....-.++|..+..+|..
T Consensus 318 Le~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea 355 (522)
T PF05701_consen 318 LEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEA 355 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Confidence 33333344444555555555555555555555555544
No 194
>PRK01770 sec-independent translocase; Provisional
Probab=20.65 E-value=6.1e+02 Score=22.61 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=10.6
Q ss_pred HhhcccchhHH-HHHhhhcc
Q 025242 105 LLFMRGPRRFL-FRHTFGRL 123 (255)
Q Consensus 105 lLlLrgPRRfL-yr~TlGRF 123 (255)
.|++-||.|+= +-+|+|++
T Consensus 16 aLlV~GPerLP~~~r~lg~~ 35 (171)
T PRK01770 16 GLVVLGPQRLPVAVKTVAGW 35 (171)
T ss_pred HHHhcCchHHHHHHHHHHHH
Confidence 34555787763 34455554
No 195
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=20.65 E-value=5.2e+02 Score=21.75 Aligned_cols=95 Identities=12% Similarity=0.033 Sum_probs=42.1
Q ss_pred hhcccchhHHHHHhhhcccchHHHHHH-----------HHHhHHHHHHhHHhhHHHHHHHHHHH-HHHHHHHhccHHHHH
Q 025242 106 LFMRGPRRFLFRHTFGRLRSEEAMFVR-----------AEKNVNELNLSGELMKKESKKLLERA-ALAEKEMIRGETELK 173 (255)
Q Consensus 106 LlLrgPRRfLyr~TlGRFqSEEaLl~~-----------Ae~~V~eLr~svdllk~Es~KL~eRa-alAEeEm~RGrtkLr 173 (255)
+++--=.+|||+....-+..=+.-+.. |+....+++..+...+.|.+.+.+.+ ..||.+...-..+.+
T Consensus 31 Il~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~ 110 (174)
T PRK07352 31 IVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAI 110 (174)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334568887766555444333333 33344444444444444444443322 334444444444444
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025242 174 NAGNQVQRLAKQVYKVETQAAGIVGCIFF 202 (255)
Q Consensus 174 ~aG~QIq~L~~svYKiE~~AagL~D~LR~ 202 (255)
....++..-+... +|..-...++.|+.
T Consensus 111 ~e~~~~~~~a~~~--i~~e~~~a~~~l~~ 137 (174)
T PRK07352 111 EDMARLKQTAAAD--LSAEQERVIAQLRR 137 (174)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4444443333332 34333444444443
No 196
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.58 E-value=3.7e+02 Score=23.90 Aligned_cols=82 Identities=20% Similarity=0.278 Sum_probs=41.1
Q ss_pred hcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH--HHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q 025242 121 GRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAE--KEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVG 198 (255)
Q Consensus 121 GRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAE--eEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D 198 (255)
|...|+.---......+..+..-+..++.+.++|++-+.-|+ +|+..-..+|.+.-.||.++-.+. ..|-+
T Consensus 118 g~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~-------~~l~~ 190 (262)
T PF14257_consen 118 GKVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQL-------KYLDD 190 (262)
T ss_pred CceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence 444444333444445555555555555566655554443332 345555555555555555544433 34444
Q ss_pred hhccceeEEEe
Q 025242 199 CIFFSSIMIVV 209 (255)
Q Consensus 199 ~LR~~~~~~~~ 209 (255)
...-+.|-|-+
T Consensus 191 ~v~~sti~i~l 201 (262)
T PF14257_consen 191 RVDYSTITISL 201 (262)
T ss_pred hhceEEEEEEE
Confidence 45555555543
No 197
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.33 E-value=1.1e+02 Score=21.65 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=4.5
Q ss_pred HHHHHHHhHhh
Q 025242 97 TGVALTAGLLF 107 (255)
Q Consensus 97 ~g~a~~aglLl 107 (255)
.++++.+|.++
T Consensus 28 f~~G~llg~l~ 38 (68)
T PF06305_consen 28 FLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 198
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.32 E-value=4.3e+02 Score=24.28 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=27.5
Q ss_pred cchHHHHHH-HHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025242 124 RSEEAMFVR-AEKNVNELNLSGELMKKESKKLLERAA 159 (255)
Q Consensus 124 qSEEaLl~~-Ae~~V~eLr~svdllk~Es~KL~eRaa 159 (255)
|+|+..++. ...+-+.|+..+..+.++.++|.+...
T Consensus 6 ~~~~~~ln~~~~~e~~~Lk~kir~le~~l~~Lk~~l~ 42 (236)
T PF12017_consen 6 QTEECILNRTLKIENKKLKKKIRRLEKELKKLKQKLE 42 (236)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678887777 455667788888888888888877663
No 199
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.20 E-value=1.3e+02 Score=32.90 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=29.6
Q ss_pred HHHHHhHhhHHHHHhhhhhcccCh-----HHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHhhC
Q 025242 31 LQRSVIQSKDSAIRSARSFQHNSS-----TYLQTLQDFVLHGVSQYQTYEDAFFSKVKDELVSAREH 92 (255)
Q Consensus 31 ~qkt~~es~DsaI~sa~si~~tSs-----~h~~~~qd~l~~~~sqY~ayEd~fF~kIKegv~vA~eh 92 (255)
||.++.+.+..-|.-|.|+-+..- +|++++ =..|.+..|+..-+.|.+...+-..+
T Consensus 573 Lh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH~~~i------t~Eel~~IE~~vNe~I~~n~~V~~~~ 633 (879)
T COG0013 573 LHAALRKVLGDHVWQAGSLVDPEKLRFDFSHYKAL------TAEELKEIERLVNEIIRENLPVKTEE 633 (879)
T ss_pred HHHHHHHHhCccceecCcccCCCeeEEeecCCCCC------CHHHHHHHHHHHHHHHHcCCceeEEE
Confidence 555555666665655555322221 122221 13566777777777777666554444
No 200
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=20.06 E-value=4.3e+02 Score=25.44 Aligned_cols=54 Identities=20% Similarity=0.225 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccceeEEE
Q 025242 148 KKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSIMIV 208 (255)
Q Consensus 148 k~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~~~~~~ 208 (255)
.+....+++|.+..|+++..=-. .++.+.+.+-+.+....+|-|..|-..|-|+
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~-------~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIi 196 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQ-------AIKELEKRIKKLEDKLDDLENRSRRNNIRII 196 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HHHHHHHHhHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHHHHHHhhccCCceeEE
Confidence 34455556666666665543333 3444444555555566666666677777663
No 201
>COG4345 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.01 E-value=4.1e+02 Score=24.22 Aligned_cols=54 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred hhhcccchHHH---HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Q 025242 119 TFGRLRSEEAM---FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (255)
Q Consensus 119 TlGRFqSEEaL---l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~sv 186 (255)
|+|+++-++-+ +.+|+.+|++++..++.+.+|+.-+.. +||.+-.-|-++.+.+
T Consensus 113 ~i~~~V~~~el~eK~~~~~~Everi~~~ieE~v~eLe~~a~--------------~lke~~~~i~~l~~~i 169 (181)
T COG4345 113 TIGIEVYPKELEEKLADAMEEVERIEKTIEELVSELESLAN--------------KLKEVTDVINSLVERI 169 (181)
T ss_pred eeeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
Confidence 67777766554 567889999999988888877665532 5666666666655543
Done!