Query 025242
Match_columns 255
No_of_seqs 32 out of 34
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 06:29:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2efr_A General control protein 81.6 15 0.00051 30.7 10.4 83 112-197 71-153 (155)
2 2b9c_A Striated-muscle alpha t 80.1 9.1 0.00031 31.4 8.5 61 128-188 66-126 (147)
3 1ic2_A Tropomyosin alpha chain 76.0 14 0.00047 27.1 7.6 54 140-193 4-57 (81)
4 3u1c_A Tropomyosin alpha-1 cha 74.4 24 0.00082 26.9 8.9 65 132-196 27-91 (101)
5 2xzr_A Immunoglobulin-binding 74.1 33 0.0011 27.6 10.6 49 152-200 58-106 (114)
6 1c1g_A Tropomyosin; contractIl 73.6 29 0.001 26.8 10.3 29 172-200 253-281 (284)
7 2efr_A General control protein 71.3 33 0.0011 28.6 9.7 55 130-188 13-67 (155)
8 3u59_A Tropomyosin beta chain; 70.7 32 0.0011 26.0 8.9 54 139-192 6-59 (101)
9 2b5u_A Colicin E3; high resolu 57.8 47 0.0016 33.0 9.3 70 131-200 317-386 (551)
10 3na7_A HP0958; flagellar bioge 56.7 73 0.0025 27.2 9.4 14 234-247 222-235 (256)
11 2dfs_A Myosin-5A; myosin-V, in 54.8 17 0.00057 37.9 5.9 49 111-159 897-952 (1080)
12 3u1c_A Tropomyosin alpha-1 cha 51.8 76 0.0026 24.1 10.3 56 138-193 5-60 (101)
13 1lrz_A FEMA, factor essential 50.9 81 0.0028 28.4 9.2 89 134-225 246-337 (426)
14 3hnw_A Uncharacterized protein 46.0 1.2E+02 0.004 24.5 9.4 21 52-72 25-45 (138)
15 4dk0_A Putative MACA; alpha-ha 45.3 66 0.0023 27.5 7.4 35 169-203 121-155 (369)
16 1i84_S Smooth muscle myosin he 44.6 1.3E+02 0.0044 31.2 10.5 68 133-200 869-936 (1184)
17 3bbp_D GRIP and coiled-coil do 43.0 35 0.0012 25.7 4.6 29 128-156 36-64 (71)
18 2z5i_A TM, general control pro 41.3 60 0.002 22.4 5.3 27 131-157 8-34 (52)
19 3oja_B Anopheles plasmodium-re 41.0 1.8E+02 0.006 26.6 9.9 22 146-167 506-527 (597)
20 2v66_B Nuclear distribution pr 40.5 1.1E+02 0.0038 24.3 7.4 48 133-180 1-55 (111)
21 2b9b_A Fusion glycoprotein F0; 38.3 85 0.0029 30.8 7.7 57 146-202 427-483 (497)
22 3fpp_A Macrolide-specific effl 37.9 1.8E+02 0.0063 24.5 10.1 43 163-205 114-156 (341)
23 4emc_A Monopolin complex subun 37.7 1.1E+02 0.0037 26.6 7.5 53 122-174 14-66 (190)
24 3zx6_A HAMP, methyl-accepting 37.5 2.1E+02 0.0072 25.1 10.0 64 128-191 87-150 (341)
25 1cii_A Colicin IA; bacteriocin 35.6 2.7E+02 0.0092 27.8 10.6 71 127-197 341-411 (602)
26 4etp_A Kinesin-like protein KA 35.0 1E+02 0.0035 28.4 7.4 36 138-173 6-41 (403)
27 3azd_A Short alpha-tropomyosin 33.8 12 0.00042 24.4 0.7 31 135-165 4-34 (37)
28 3oja_A Leucine-rich immune mol 33.7 2E+02 0.007 25.8 9.0 6 91-96 337-342 (487)
29 3oja_A Leucine-rich immune mol 33.7 1.8E+02 0.006 26.2 8.6 23 162-184 462-484 (487)
30 3oja_B Anopheles plasmodium-re 32.1 2.9E+02 0.01 25.2 9.8 7 24-30 397-403 (597)
31 3na7_A HP0958; flagellar bioge 31.4 2.4E+02 0.0083 23.9 10.3 143 38-187 15-163 (256)
32 3plt_A Sphingolipid long chain 31.0 2.2E+02 0.0074 25.3 8.5 55 131-185 100-160 (234)
33 1kd8_B GABH BLL, GCN4 acid bas 30.8 80 0.0027 21.1 4.3 28 130-157 3-30 (36)
34 1qu7_A Methyl-accepting chemot 30.7 2.1E+02 0.0071 24.1 8.1 63 129-191 8-70 (227)
35 1ic2_A Tropomyosin alpha chain 29.9 1.6E+02 0.0054 21.3 9.7 68 134-201 5-72 (81)
36 4etp_A Kinesin-like protein KA 29.3 1.3E+02 0.0044 27.7 7.0 49 134-182 9-57 (403)
37 1i84_S Smooth muscle myosin he 28.0 2E+02 0.0069 29.8 8.8 25 130-154 873-897 (1184)
38 1go4_E MAD1 (mitotic arrest de 27.3 90 0.0031 24.5 4.8 70 135-204 12-95 (100)
39 3cvf_A Homer-3, homer protein 27.1 1.4E+02 0.0047 22.6 5.6 48 137-184 8-55 (79)
40 3m48_A General control protein 26.8 68 0.0023 21.1 3.3 26 131-156 3-28 (33)
41 2jee_A YIIU; FTSZ, septum, coi 26.7 2.1E+02 0.0072 21.7 10.4 56 128-183 6-64 (81)
42 3u06_A Protein claret segregat 26.3 1.7E+02 0.006 27.1 7.4 21 137-157 12-32 (412)
43 3vkg_A Dynein heavy chain, cyt 26.2 8.9E+02 0.03 28.8 17.4 89 110-198 2010-2098(3245)
44 3l0f_B C-phycocyanin beta chai 25.7 1.8E+02 0.006 24.2 6.6 62 36-97 2-68 (172)
45 3u06_A Protein claret segregat 24.1 2.1E+02 0.0071 26.6 7.5 55 147-201 8-62 (412)
46 3cve_A Homer protein homolog 1 24.1 2.2E+02 0.0076 21.1 6.6 46 139-184 4-49 (72)
47 2v71_A Nuclear distribution pr 24.0 3.4E+02 0.012 23.2 10.3 38 127-164 48-85 (189)
48 3tnu_A Keratin, type I cytoske 23.4 2.6E+02 0.009 21.7 7.1 53 131-186 34-93 (131)
49 2ke4_A CDC42-interacting prote 23.2 1.2E+02 0.0041 23.3 4.8 31 134-164 61-91 (98)
50 2wq1_A General control protein 23.0 1.4E+02 0.0048 19.6 4.3 27 130-156 2-28 (33)
51 2js5_A Uncharacterized protein 22.7 1.8E+02 0.0063 21.6 5.5 36 143-179 4-47 (71)
52 2lom_A HIG1 domain family memb 27.9 19 0.00063 27.9 0.0 30 75-107 13-42 (93)
53 4etp_B Spindle POLE BODY-assoc 22.2 1.9E+02 0.0063 27.2 6.6 55 142-203 10-64 (333)
54 2ouf_A Hypothetical protein; s 21.6 71 0.0024 24.9 3.2 25 141-165 24-48 (94)
55 3u59_A Tropomyosin beta chain; 21.6 2.6E+02 0.0088 20.9 10.3 61 136-196 31-91 (101)
56 2ocy_A RAB guanine nucleotide 21.4 2.9E+02 0.0099 23.0 7.1 45 148-192 107-151 (154)
57 3hnw_A Uncharacterized protein 20.5 3.3E+02 0.011 21.8 8.7 59 133-191 73-131 (138)
58 4ani_A Protein GRPE; chaperone 20.3 3.2E+02 0.011 23.6 7.4 18 139-156 63-80 (213)
59 1chu_A Protein (L-aspartate ox 20.1 2.2E+02 0.0076 26.4 6.8 32 111-144 443-474 (540)
No 1
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=81.56 E-value=15 Score=30.70 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=70.5
Q ss_pred hhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 112 RRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 112 RRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
|-=-|-..+.-+. ..+..|+.+.+.---+|.-+.+++.+|++++..+.+.++.=.-.|.++-.+|.++....|-.++
T Consensus 71 rEd~yEeqIk~L~---~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~ 147 (155)
T 2efr_A 71 KEDKYEEEIKVLS---DKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLEN 147 (155)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHH
Confidence 4444555555442 5788888888888889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhh
Q 025242 192 QAAGIV 197 (255)
Q Consensus 192 ~AagL~ 197 (255)
..+.|+
T Consensus 148 ~~~~~~ 153 (155)
T 2efr_A 148 EVARLK 153 (155)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 988876
No 2
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=80.13 E-value=9.1 Score=31.41 Aligned_cols=61 Identities=23% Similarity=0.288 Sum_probs=54.3
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYK 188 (255)
.+...|++++.+....+..+-.++.+..+|+..||.....=...|+..|..|++|--+--|
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eek 126 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEE 126 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence 4556889999999999999999999999999999999999999999999999998765433
No 3
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=76.00 E-value=14 Score=27.06 Aligned_cols=54 Identities=20% Similarity=0.283 Sum_probs=31.5
Q ss_pred HHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025242 140 LNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQA 193 (255)
Q Consensus 140 Lr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~A 193 (255)
++..|..++.|.....+|+..+|.++..-.-...++..+|.+|-+.+--+|...
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666665555555555555555555555555443
No 4
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.35 E-value=24 Score=26.92 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=37.3
Q ss_pred HHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 025242 132 RAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGI 196 (255)
Q Consensus 132 ~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL 196 (255)
.|+.+++.+.+..+..-.|..-|..|...-|.|+-+=...|..+-..+..--+..-+.|...+.|
T Consensus 27 ~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L 91 (101)
T 3u1c_A 27 QAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555666666666666555556555555555555555555555554
No 5
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=74.06 E-value=33 Score=27.63 Aligned_cols=49 Identities=16% Similarity=0.358 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 152 KKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 152 ~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
|+-..|.---.....-.+-++|++..|+..|++.+|-+|+..+.|+.-+
T Consensus 58 Qqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 58 QQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444455566777899999999999999999999999987643
No 6
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=73.58 E-value=29 Score=26.84 Aligned_cols=29 Identities=0% Similarity=0.041 Sum_probs=11.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 172 LKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 172 Lr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
+.....++..+-...-+++.+...+.+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 253 IDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333444444443
No 7
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=71.32 E-value=33 Score=28.59 Aligned_cols=55 Identities=31% Similarity=0.298 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYK 188 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYK 188 (255)
...|++++.+... +-.++.+-++|+..||.....=-..|+.+|+.|++|--+--|
T Consensus 13 ae~ad~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seek 67 (155)
T 2efr_A 13 LSKNYHLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEK 67 (155)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhH
Confidence 3455566665444 667777777777777777666667777777777776554433
No 8
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=70.69 E-value=32 Score=25.99 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=25.9
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHh
Q 025242 139 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 192 (255)
Q Consensus 139 eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~ 192 (255)
..+..|..|+-|.....+|+-.+|.+++-=.-...+...+|.+|=+.+-.+|..
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~e 59 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDE 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555444444444444444444444444333
No 9
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=57.81 E-value=47 Score=32.99 Aligned_cols=70 Identities=16% Similarity=0.089 Sum_probs=57.8
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
..||++++..|..++...+-.....||...++.=+.--|+.|-++-+++-..+..+-..+++|-++|..=
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~G 386 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGG 386 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhcc
Confidence 3567777777777777777778888888888888888899999999999999999999998888777543
No 10
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.68 E-value=73 Score=27.17 Aligned_cols=14 Identities=21% Similarity=0.548 Sum_probs=6.6
Q ss_pred eeeecCCCCccccc
Q 025242 234 ILICDRKGSSLFHG 247 (255)
Q Consensus 234 ~~~~~~~~~~~~~~ 247 (255)
|+.|.--|.-||+.
T Consensus 222 Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 222 MITCPYCGRILYAE 235 (256)
T ss_dssp CEECTTTCCEEECS
T ss_pred EEECCCCCeeEEeC
Confidence 34455555444443
No 11
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=54.77 E-value=17 Score=37.94 Aligned_cols=49 Identities=24% Similarity=0.339 Sum_probs=10.2
Q ss_pred chhHHHHHhhhcccchHHH-------HHHHHHhHHHHHHhHHhhHHHHHHHHHHHH
Q 025242 111 PRRFLFRHTFGRLRSEEAM-------FVRAEKNVNELNLSGELMKKESKKLLERAA 159 (255)
Q Consensus 111 PRRfLyr~TlGRFqSEEaL-------l~~Ae~~V~eLr~svdllk~Es~KL~eRaa 159 (255)
-|+++=|.-+.+++.|... -..-|.++++|+..++...+|.+.|.++..
T Consensus 897 ~R~~laRr~~~~Lk~ear~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~ 952 (1080)
T 2dfs_A 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMN 952 (1080)
T ss_dssp HHHHHHHHHTTTC-----------------------------------------CH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777666432 234566777777777776666555555443
No 12
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.81 E-value=76 Score=24.08 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=33.6
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhh
Q 025242 138 NELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQA 193 (255)
Q Consensus 138 ~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~A 193 (255)
.-.+..|..++.|.....+|+-.+|.+++.=.-...+...+|.+|-+.+-.+|...
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~el 60 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSR 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666666666666666555555443
No 13
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=50.95 E-value=81 Score=28.38 Aligned_cols=89 Identities=13% Similarity=0.156 Sum_probs=57.7
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh---hhccceeEEEec
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVG---CIFFSSIMIVVG 210 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D---~LR~~~~~~~~~ 210 (255)
..-.++|++.++.+.+|..|+.++.. ...+-++=..++++.-+||.+.-+.++.++.--+ .+ ..-..++.+.-|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~lAgal~~~~~ 322 (426)
T 1lrz_A 246 DEYIKELNEERDILNKDLNKALKDIE-KRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQE--EHGNELPISAGFFFINP 322 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcceeEEEEEEEEC
Confidence 45566777777777777777776662 1112233367899999999999888887643110 12 244667777788
Q ss_pred ceecccchhhhhccC
Q 025242 211 KTVVGNLSDMVDNFN 225 (255)
Q Consensus 211 ~~~~~~~~~~~~~~~ 225 (255)
.++.+-.+-+.+.|+
T Consensus 323 ~~~~y~y~gs~~~~~ 337 (426)
T 1lrz_A 323 FEVVYYAGGTSNAFR 337 (426)
T ss_dssp SCEEEEEEEECGGGG
T ss_pred CEEEEEecCchhhHh
Confidence 888877766655544
No 14
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.01 E-value=1.2e+02 Score=24.50 Aligned_cols=21 Identities=19% Similarity=0.588 Sum_probs=15.2
Q ss_pred cChHHHHHHHHHHHHHHHHHH
Q 025242 52 NSSTYLQTLQDFVLHGVSQYQ 72 (255)
Q Consensus 52 tSs~h~~~~qd~l~~~~sqY~ 72 (255)
-|..|++++-.+++.=..+.+
T Consensus 25 e~ee~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 25 ESEEYLQRVASYINNKITEFN 45 (138)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHHH
Confidence 467888888888887666554
No 15
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=45.33 E-value=66 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025242 169 ETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 169 rtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~ 203 (255)
+..+.++-.+++.+-..+-..+.+...+...|...
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~ 155 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYT 155 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555555555555444444444444444444433
No 16
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=44.57 E-value=1.3e+02 Score=31.24 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=35.0
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 133 Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
.+.++..+...++.+..+.++|.+....++.++..=+..+..+..++..+....-+++.+-..+.+.|
T Consensus 869 l~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~el 936 (1184)
T 1i84_S 869 TKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARI 936 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455555555555555555555555555556666555555555554444433
No 17
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=43.01 E-value=35 Score=25.69 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~e 156 (255)
.||+-+|+..-.|-+-++++|.|+++|+.
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlER 64 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLER 64 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHh
Confidence 68889999999999999999999999863
No 18
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=41.26 E-value=60 Score=22.44 Aligned_cols=27 Identities=15% Similarity=0.037 Sum_probs=19.7
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLER 157 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~eR 157 (255)
.-||+.|..|..+||.+..|+..-.++
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek 34 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLK 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 357899999999988887766544333
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.96 E-value=1.8e+02 Score=26.64 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhc
Q 025242 146 LMKKESKKLLERAALAEKEMIR 167 (255)
Q Consensus 146 llk~Es~KL~eRaalAEeEm~R 167 (255)
.++++.+++.++.+..|.+.++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~ 527 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQA 527 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHH
Confidence 4444444444444444444444
No 20
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=40.49 E-value=1.1e+02 Score=24.33 Aligned_cols=48 Identities=17% Similarity=0.206 Sum_probs=37.1
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH-------HhccHHHHHHhHHHHH
Q 025242 133 AEKNVNELNLSGELMKKESKKLLERAALAEKE-------MIRGETELKNAGNQVQ 180 (255)
Q Consensus 133 Ae~~V~eLr~svdllk~Es~KL~eRaalAEeE-------m~RGrtkLr~aG~QIq 180 (255)
||++..+|+...+.+..|...+.++...+..| +++--++||..-.+++
T Consensus 1 ~Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~ 55 (111)
T 2v66_B 1 AEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 55 (111)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999888888777666 6666677776655544
No 21
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=38.30 E-value=85 Score=30.75 Aligned_cols=57 Identities=14% Similarity=0.187 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhcc
Q 025242 146 LMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFF 202 (255)
Q Consensus 146 llk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~ 202 (255)
+.+.|+.+.......|++-+.+-...|.+....+.++.+..|.+|+..+.++.-.++
T Consensus 427 DISseL~~vn~sl~~a~~~I~~Sn~~L~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQSDTYLSAIEDKIEEILSKIYHIENEIARIKKLIGE 483 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhHHHHhhhhhhhHHHHHHHHHhcc
Confidence 356788888888889999999999999999999999999999999999999876554
No 22
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=37.88 E-value=1.8e+02 Score=24.52 Aligned_cols=43 Identities=12% Similarity=0.178 Sum_probs=23.0
Q ss_pred HHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhcccee
Q 025242 163 KEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFSSI 205 (255)
Q Consensus 163 eEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~~~ 205 (255)
.++..=++++..+-.+++.+-..+-..+.+-..+...|....|
T Consensus 114 ~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i 156 (341)
T 3fpp_A 114 QDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRI 156 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEE
Confidence 3334444555555666666655555555555555555554443
No 23
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=37.75 E-value=1.1e+02 Score=26.64 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=38.1
Q ss_pred cccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHH
Q 025242 122 RLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKN 174 (255)
Q Consensus 122 RFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~ 174 (255)
|+.+-+-|+..-+.+..-|++.++....|++.|+++.+.++.+...-...+.+
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 44455667777888888888899999999999999999998888665555543
No 24
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=37.47 E-value=2.1e+02 Score=25.08 Aligned_cols=64 Identities=13% Similarity=0.162 Sum_probs=48.5
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
.-+......+++|..+++......+.+.+.+..+.+.+..|...+.+....++.|..+.-+|..
T Consensus 87 ~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~ 150 (341)
T 3zx6_A 87 ASLEETAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 150 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677788888888888888888888888888888888888888777777766655544
No 25
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=35.57 E-value=2.7e+02 Score=27.82 Aligned_cols=71 Identities=14% Similarity=0.136 Sum_probs=50.4
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIV 197 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~ 197 (255)
..+++.-.++...|||-++..++|.-+++-.....--..-++.....+|-.++..+.+.--.+|+++.++.
T Consensus 341 Kki~naevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~ 411 (602)
T 1cii_A 341 KKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGIN 411 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45677777777888888888888888877777766667777777777777777766666666666555543
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=34.95 E-value=1e+02 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.043 Sum_probs=16.2
Q ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHH
Q 025242 138 NELNLSGELMKKESKKLLERAALAEKEMIRGETELK 173 (255)
Q Consensus 138 ~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr 173 (255)
..|++.++.++.|.++|++....+|.++..=..+|+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 41 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILI 41 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443333333
No 27
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.79 E-value=12 Score=24.41 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=22.7
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 135 KNVNELNLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 135 ~~V~eLr~svdllk~Es~KL~eRaalAEeEm 165 (255)
..++.++..|..+..|...+++|+..++.++
T Consensus 4 ~~i~avKkKiq~lq~q~d~aee~~~~~~~~l 34 (37)
T 3azd_A 4 SSLEAVRRKIRSLQEQNYHLENEVARLKKLV 34 (37)
T ss_dssp --CHHHHHHHHHHHHHTTTTHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777788888888888888888877665
No 28
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.75 E-value=2e+02 Score=25.80 Aligned_cols=6 Identities=0% Similarity=-0.020 Sum_probs=2.8
Q ss_pred hCchhh
Q 025242 91 EHPAAA 96 (255)
Q Consensus 91 ehP~ia 96 (255)
.||.+.
T Consensus 337 ~HrNLV 342 (487)
T 3oja_A 337 RQREID 342 (487)
T ss_dssp HHHHHH
T ss_pred cccchh
Confidence 455444
No 29
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.65 E-value=1.8e+02 Score=26.21 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=9.6
Q ss_pred HHHHhccHHHHHHhHHHHHHHHH
Q 025242 162 EKEMIRGETELKNAGNQVQRLAK 184 (255)
Q Consensus 162 EeEm~RGrtkLr~aG~QIq~L~~ 184 (255)
.++...-+.+|.++-.+=+.|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~ 484 (487)
T 3oja_A 462 DLALASANATLQELVVREQNLAS 484 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhcccHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 30
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=32.05 E-value=2.9e+02 Score=25.16 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=3.7
Q ss_pred cchHHHH
Q 025242 24 AKEWVED 30 (255)
Q Consensus 24 ~~~w~e~ 30 (255)
..|+++.
T Consensus 397 ~~~~~~~ 403 (597)
T 3oja_B 397 DKPYLDR 403 (597)
T ss_dssp SSHHHHH
T ss_pred CccchhH
Confidence 4566554
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.35 E-value=2.4e+02 Score=23.90 Aligned_cols=143 Identities=11% Similarity=0.069 Sum_probs=86.8
Q ss_pred hhHHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHhHHHHHHHh------HHHHHHHHhhCchhhHHHHHHHhHhhcccc
Q 025242 38 SKDSAIRSARSFQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK------VKDELVSAREHPAAATGVALTAGLLFMRGP 111 (255)
Q Consensus 38 s~DsaI~sa~si~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~k------IKegv~vA~ehP~ia~g~a~~aglLlLrgP 111 (255)
.+|+-|+.-+..+.+=|..+..+.+-+..+..++...+..+-.. ....+.-+...=.-. -.-+--.+.|
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~-----~~~l~~v~~~ 89 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASI-----QKKMSEIKSE 89 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHccCCH
Confidence 46777766665444446666666666555555555544433221 111111111110000 0001112356
Q ss_pred hhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH
Q 025242 112 RRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVY 187 (255)
Q Consensus 112 RRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svY 187 (255)
|- |..--....+-+.-...++.++.++...++.++.+...+.++....+.++..-+..+.+.-.+|+.-+..+.
T Consensus 90 kE--~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~ 163 (256)
T 3na7_A 90 RE--LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIF 163 (256)
T ss_dssp SH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 455556666677778888889999999999999999999999888888888888888888777766665544
No 32
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.96 E-value=2.2e+02 Score=25.31 Aligned_cols=55 Identities=22% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHH------HHHHHHHHHHhccHHHHHHhHHHHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLL------ERAALAEKEMIRGETELKNAGNQVQRLAKQ 185 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~------eRaalAEeEm~RGrtkLr~aG~QIq~L~~s 185 (255)
...|.+|...|.--+-+..++.||. .+....|.|+.|.......+-.||-++=+.
T Consensus 100 R~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 100 RNIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 4456666666666667777777776 678889999999999998888888654433
No 33
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.79 E-value=80 Score=21.07 Aligned_cols=28 Identities=18% Similarity=0.187 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLER 157 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~eR 157 (255)
.+.-|.+|++|-..-..+.+|..+|.+-
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4567888888888888888888888653
No 34
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=30.71 E-value=2.1e+02 Score=24.10 Aligned_cols=63 Identities=11% Similarity=0.158 Sum_probs=49.6
Q ss_pred HHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 129 MFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 129 Ll~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
-+......+++|..+++......+...+.+..+.+....|...+.+....++.|..+.-+|..
T Consensus 8 ~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~~I~~ 70 (227)
T 1qu7_A 8 SLEQTAASMEQLTATVKQNAENARQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIAD 70 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566678888888888888888888888888889999999998888888887766655543
No 35
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=29.93 E-value=1.6e+02 Score=21.29 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=41.2
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
.+++.-|+...|........+......+|+....+-..+.+--+-|+.+-...=+.|.+.......|.
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666555555443
No 36
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=29.30 E-value=1.3e+02 Score=27.74 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=24.6
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRL 182 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L 182 (255)
+.++++|++..+.+..+.++++.+....++++......-|.--++|+.+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555555555555555555555444444455443
No 37
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=27.95 E-value=2e+02 Score=29.76 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=10.3
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKL 154 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL 154 (255)
+...+..+++++..++.+..|.+++
T Consensus 873 L~~le~~l~ele~~l~~Le~e~~~l 897 (1184)
T 1i84_S 873 QQKAEAELKELEQKHTQLCEEKNLL 897 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333
No 38
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=27.26 E-value=90 Score=24.50 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=48.2
Q ss_pred HhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhc----cHHHH----------HHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q 025242 135 KNVNELNLSGELMKKESKKLLERAALAEKEMIR----GETEL----------KNAGNQVQRLAKQVYKVETQAAGIVGCI 200 (255)
Q Consensus 135 ~~V~eLr~svdllk~Es~KL~eRaalAEeEm~R----GrtkL----------r~aG~QIq~L~~svYKiE~~AagL~D~L 200 (255)
..|..|+..|+-+..|..+|.++...-|-++-+ |--+- -=|.-..++.-..+-+......+|+..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999998888866 53211 0112222333456666666677777777
Q ss_pred ccce
Q 025242 201 FFSS 204 (255)
Q Consensus 201 R~~~ 204 (255)
+.+.
T Consensus 92 ~~lE 95 (100)
T 1go4_E 92 RAME 95 (100)
T ss_dssp TTCC
T ss_pred HHHh
Confidence 7653
No 39
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.14 E-value=1.4e+02 Score=22.55 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=31.8
Q ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Q 025242 137 VNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK 184 (255)
Q Consensus 137 V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~ 184 (255)
.+++-+.+..+..+.+-|++++...|.++...+.+=...-.+|++++.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e 55 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQ 55 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666677778888888888888777666666666665554
No 40
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=26.76 E-value=68 Score=21.05 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.6
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL~e 156 (255)
+.-|.+|++|-..-..+.+|..+|.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45678999999999999999888864
No 41
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=26.66 E-value=2.1e+02 Score=21.70 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=41.4
Q ss_pred HHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHH---HHHhccHHHHHHhHHHHHHHH
Q 025242 128 AMFVRAEKNVNELNLSGELMKKESKKLLERAALAE---KEMIRGETELKNAGNQVQRLA 183 (255)
Q Consensus 128 aLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAE---eEm~RGrtkLr~aG~QIq~L~ 183 (255)
.+|..-|.||..+=.+|.++.-|.+-|.+.-.... .+...||-.|+..-.|++.-.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~ 64 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 57888999999999999999999999976654433 345566666776666665443
No 42
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.26 E-value=1.7e+02 Score=27.12 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=8.3
Q ss_pred HHHHHHhHHhhHHHHHHHHHH
Q 025242 137 VNELNLSGELMKKESKKLLER 157 (255)
Q Consensus 137 V~eLr~svdllk~Es~KL~eR 157 (255)
+.+|++..+.+..+.+++.+.
T Consensus 12 l~~~~~~~~~l~~~~~~~~~~ 32 (412)
T 3u06_A 12 VVHLRQRTEELLRCNEQQAAE 32 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=26.21 E-value=8.9e+02 Score=28.83 Aligned_cols=89 Identities=13% Similarity=0.067 Sum_probs=57.9
Q ss_pred cchhHHHHHhhhcccchHHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHH
Q 025242 110 GPRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKV 189 (255)
Q Consensus 110 gPRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKi 189 (255)
.|-|==...--..+..-++-++.++++++++..+++.++.|-+++......-|.|+..-..||..|.+=|.+|.+.--.=
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 66554444444444445566677777777777777777777777766666677777777778877877777776655444
Q ss_pred HHhhhhhhh
Q 025242 190 ETQAAGIVG 198 (255)
Q Consensus 190 E~~AagL~D 198 (255)
+.++..|.+
T Consensus 2090 ~~~~~~l~~ 2098 (3245)
T 3vkg_A 2090 EQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 44
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=25.72 E-value=1.8e+02 Score=24.20 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=45.9
Q ss_pred hHhhHHHHHhhhh-hcccChHHHHHHHHHHHHHHHHHHhHHHHHHHh---HHHHHH-HHhhCchhhH
Q 025242 36 IQSKDSAIRSARS-FQHNSSTYLQTLQDFVLHGVSQYQTYEDAFFSK---VKDELV-SAREHPAAAT 97 (255)
Q Consensus 36 ~es~DsaI~sa~s-i~~tSs~h~~~~qd~l~~~~sqY~ayEd~fF~k---IKegv~-vA~ehP~ia~ 97 (255)
.+++-++|.+|-+ -|=-|+..+.++++|+..+.....++|-.-=+. |++++. +-..+|+.+.
T Consensus 2 ~d~~t~~I~~AD~~gRyls~~EL~~l~~~~~~~~~Rl~aa~~l~~na~~IV~~A~~~~~~~~P~l~~ 68 (172)
T 3l0f_B 2 LDAFAKVVAQADARGEFLTNAQFDALSNLVKEGNKRLDAVNRITSNASTIVANAARALFAEQPQLIQ 68 (172)
T ss_dssp CCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCGGGTS
T ss_pred CcHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHCcCCCC
Confidence 4667788888887 788899999999999999999888886542221 355554 4456898765
No 45
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.12 E-value=2.1e+02 Score=26.59 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 025242 147 MKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIF 201 (255)
Q Consensus 147 lk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR 201 (255)
|+.|.+.|.++...-+.+.++=..++.....||...-...-+..++-..|++.+|
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEE
Confidence 3334444444433333333333333333333443333333444444455555443
No 46
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.12 E-value=2.2e+02 Score=21.08 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=29.2
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHH
Q 025242 139 ELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAK 184 (255)
Q Consensus 139 eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~ 184 (255)
++-+.+..+..+-+-|++++...|.++...+.+=...-.+|+++..
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666667777777777777776655555555555544
No 47
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.03 E-value=3.4e+02 Score=23.22 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=28.4
Q ss_pred HHHHHHHHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025242 127 EAMFVRAEKNVNELNLSGELMKKESKKLLERAALAEKE 164 (255)
Q Consensus 127 EaLl~~Ae~~V~eLr~svdllk~Es~KL~eRaalAEeE 164 (255)
|+=+..++++..+|+..+..++.|...+.++....-.|
T Consensus 48 E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 48 EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888888888877666655444
No 48
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.40 E-value=2.6e+02 Score=21.68 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHHhHHhhHHHHHHH-------HHHHHHHHHHHhccHHHHHHhHHHHHHHHHHH
Q 025242 131 VRAEKNVNELNLSGELMKKESKKL-------LERAALAEKEMIRGETELKNAGNQVQRLAKQV 186 (255)
Q Consensus 131 ~~Ae~~V~eLr~svdllk~Es~KL-------~eRaalAEeEm~RGrtkLr~aG~QIq~L~~sv 186 (255)
..+..++.+||..+..+..|++.+ +...+-+|. ||...|.+....|..|-...
T Consensus 34 ~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL 93 (131)
T 3tnu_A 34 QSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQL 93 (131)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666665554 333333333 45555555555555544433
No 49
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.18 E-value=1.2e+02 Score=23.30 Aligned_cols=31 Identities=29% Similarity=0.144 Sum_probs=24.4
Q ss_pred HHhHHHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 025242 134 EKNVNELNLSGELMKKESKKLLERAALAEKE 164 (255)
Q Consensus 134 e~~V~eLr~svdllk~Es~KL~eRaalAEeE 164 (255)
+.+..|+...+|.++.|+.|+..-++.+|..
T Consensus 61 ~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6677888888888888888888877766644
No 50
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=23.00 E-value=1.4e+02 Score=19.57 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=22.0
Q ss_pred HHHHHHhHHHHHHhHHhhHHHHHHHHH
Q 025242 130 FVRAEKNVNELNLSGELMKKESKKLLE 156 (255)
Q Consensus 130 l~~Ae~~V~eLr~svdllk~Es~KL~e 156 (255)
.+.-|.+|++|-.....+.+|..+|.+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356788999999888888888888764
No 51
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=22.73 E-value=1.8e+02 Score=21.64 Aligned_cols=36 Identities=25% Similarity=0.299 Sum_probs=25.4
Q ss_pred hHHhhHHHHHHHHHHHHH--------HHHHHhccHHHHHHhHHHH
Q 025242 143 SGELMKKESKKLLERAAL--------AEKEMIRGETELKNAGNQV 179 (255)
Q Consensus 143 svdllk~Es~KL~eRaal--------AEeEm~RGrtkLr~aG~QI 179 (255)
.++.+|+|.+||..+|.. +|. +=-||.+|-.-+.+.
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd-LP~~w~~i~~vA~~t 47 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED-LPTGWNRIMEVAEKT 47 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTTSGGGHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc-chhhHHHHHHHHHHH
Confidence 567889999999888864 554 667777666544443
No 52
>2lom_A HIG1 domain family member 1A; membrane protein, helical bundle; NMR {Homo sapiens}
Probab=27.91 E-value=19 Score=27.90 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHhHHHHHHHHhhCchhhHHHHHHHhHhh
Q 025242 75 EDAFFSKVKDELVSAREHPAAATGVALTAGLLF 107 (255)
Q Consensus 75 Ed~fF~kIKegv~vA~ehP~ia~g~a~~aglLl 107 (255)
|..+.+|+. .-+++||++-+|++++++.++
T Consensus 13 ~e~~~~K~~---rk~ke~PlvpIg~~~~~~vl~ 42 (93)
T 2lom_A 13 EEDQGSKLI---RKAKEAPFVPVGIAGFAAIVA 42 (93)
Confidence 444455553 346789999999877776655
No 53
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.23 E-value=1.9e+02 Score=27.16 Aligned_cols=55 Identities=13% Similarity=-0.007 Sum_probs=41.3
Q ss_pred HhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhccc
Q 025242 142 LSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGIVGCIFFS 203 (255)
Q Consensus 142 ~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL~D~LR~~ 203 (255)
...+.++.|.+++++.|..+|+.|..---|+.+.--+=| ++|+.--.++...|.-
T Consensus 10 ~e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRR-------kLENSIdElKG~IRcF 64 (333)
T 4etp_B 10 KEIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSR-------RLENSIIEQKGTMRVY 64 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhHHHhcCcEEEE
Confidence 345889999999999999999999998888877655444 4555555666666653
No 54
>2ouf_A Hypothetical protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Helicobacter pylori} SCOP: a.292.1.1 PDB: 2bo3_A 3mli_A
Probab=21.63 E-value=71 Score=24.90 Aligned_cols=25 Identities=44% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHHHHHH
Q 025242 141 NLSGELMKKESKKLLERAALAEKEM 165 (255)
Q Consensus 141 r~svdllk~Es~KL~eRaalAEeEm 165 (255)
..+-+++++|+.|+++|.++.|.=+
T Consensus 24 ~An~~lv~~ELe~llerlaamE~ll 48 (94)
T 2ouf_A 24 HASKKLSKKELERLLELLALLETFI 48 (94)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999998755
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.56 E-value=2.6e+02 Score=20.89 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=23.2
Q ss_pred hHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q 025242 136 NVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQAAGI 196 (255)
Q Consensus 136 ~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~AagL 196 (255)
+++.+.+..+..-.|..-|..+...-|.++-+=...|..+-..+..--+..-..|...+.|
T Consensus 31 ~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 31 DKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333334444444443
No 56
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.41 E-value=2.9e+02 Score=23.01 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHh
Q 025242 148 KKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVETQ 192 (255)
Q Consensus 148 k~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~~ 192 (255)
+.|..+++.|...-++++.--.+.|..--.|++.|-..++++|..
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~~e 151 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445556677777777778777888888888888888877777653
No 57
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.54 E-value=3.3e+02 Score=21.78 Aligned_cols=59 Identities=25% Similarity=0.277 Sum_probs=25.6
Q ss_pred HHHhHHHHHHhHHhhHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHH
Q 025242 133 AEKNVNELNLSGELMKKESKKLLERAALAEKEMIRGETELKNAGNQVQRLAKQVYKVET 191 (255)
Q Consensus 133 Ae~~V~eLr~svdllk~Es~KL~eRaalAEeEm~RGrtkLr~aG~QIq~L~~svYKiE~ 191 (255)
+..++..|...++.+.+|...|......+..++--=.-++...-+++..|-+.+-+.|.
T Consensus 73 ~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 73 AKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555554444444444433333333333333333444444444444444443
No 58
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=20.32 E-value=3.2e+02 Score=23.60 Aligned_cols=18 Identities=0% Similarity=-0.077 Sum_probs=7.3
Q ss_pred HHHHhHHhhHHHHHHHHH
Q 025242 139 ELNLSGELMKKESKKLLE 156 (255)
Q Consensus 139 eLr~svdllk~Es~KL~e 156 (255)
.|...++.+++|...+.+
T Consensus 63 ~l~~~l~~l~~e~~el~d 80 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEH 80 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444433
No 59
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=20.13 E-value=2.2e+02 Score=26.40 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=21.9
Q ss_pred chhHHHHHhhhcccchHHHHHHHHHhHHHHHHhH
Q 025242 111 PRRFLFRHTFGRLRSEEAMFVRAEKNVNELNLSG 144 (255)
Q Consensus 111 PRRfLyr~TlGRFqSEEaLl~~Ae~~V~eLr~sv 144 (255)
=|+..|.+ .|.|++++ .|.+|-+++++|+..+
T Consensus 443 l~~~m~~~-~gi~R~~~-~L~~a~~~l~~l~~~~ 474 (540)
T 1chu_A 443 LRLFMWDY-VGIVRTTK-RLERALRRITMLQQEI 474 (540)
T ss_dssp HHHHHHHH-SSSSBCHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hCcccCHH-HHHHHHHHHHHHHHHH
Confidence 46667766 67888877 5666777777776544
Done!